Citrus Sinensis ID: 023470
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 282 | 2.2.26 [Sep-21-2011] | |||||||
| Q6UX53 | 244 | Methyltransferase-like pr | yes | no | 0.234 | 0.270 | 0.325 | 0.0001 | |
| O14321 | 378 | Sterol 24-C-methyltransfe | yes | no | 0.361 | 0.269 | 0.290 | 0.0001 | |
| C5BMZ8 | 570 | Biotin biosynthesis bifun | yes | no | 0.226 | 0.112 | 0.359 | 0.0002 | |
| Q562C4 | 244 | Methyltransferase-like pr | yes | no | 0.202 | 0.233 | 0.338 | 0.0003 | |
| Q9DD20 | 244 | Methyltransferase-like pr | yes | no | 0.241 | 0.278 | 0.292 | 0.0008 |
| >sp|Q6UX53|MET7B_HUMAN Methyltransferase-like protein 7B OS=Homo sapiens GN=METTL7B PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 125 GLNAQELAKNPRLEYFIVKDLNQDQKLEFDH--------------CSFDAVVCAVSVQYL 170
G L NP E F+ K + +++ L+++ S D VVC + + +
Sbjct: 91 GCRVTCLDPNPHFEKFLTKSMAENRHLQYERFVVAPGEDMRQLADGSMDVVVCTLVLCSV 150
Query: 171 QQPEKVFAEVFRVLKPGGVF 190
Q P KV EV RVL+PGGV
Sbjct: 151 QSPRKVLQEVRRVLRPGGVL 170
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Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|O14321|ERG6_SCHPO Sterol 24-C-methyltransferase erg6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 91 YRQMLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQ- 149
YR ++PGS VLD+ + + GLN + + Y + ++L++ Q
Sbjct: 118 YRMGIKPGSRVLDVGCGVGGPAREITEFTGCNLVGLNNNDYQISRCNNYAVKRNLDKKQV 177
Query: 150 -------KLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIV 192
+ F+ +FD V + + E V+ E+FRVLKPGGVF V
Sbjct: 178 FVKGDFMHMPFEDNTFDYVYAIEATVHAPSLEGVYGEIFRVLKPGGVFGV 227
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol. Involved in the biosynthesis or ergosterol which is important for plasma membrane structure and function and for localization of plasma membrane proteins. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|C5BMZ8|BIOHC_TERTT Biotin biosynthesis bifunctional protein BioHC OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=bioC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 145 LNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAI 204
L + L F SFD + +++VQ+ + P ++F+E++R LKPGG F +S +
Sbjct: 397 LGDMESLPFVDESFDGCISSLTVQWSENPLQLFSEMYRALKPGGWFALSTLGPETLFELR 456
Query: 205 SAWR 208
SAWR
Sbjct: 457 SAWR 460
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The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters. Teredinibacter turnerae (strain ATCC 39867 / T7901) (taxid: 377629) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 9 EC: 7 |
| >sp|Q562C4|MET7B_RAT Methyltransferase-like protein 7B OS=Rattus norvegicus GN=Mettl7b PE=1 SV=1 | Back alignment and function description |
|---|
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Query: 134 NPRLEYFIVKDLNQDQKLEFDH--------------CSFDAVVCAVSVQYLQQPEKVFAE 179
NP E F+ K + +++ L+++ S D VVC + + +Q P KV E
Sbjct: 100 NPNFEKFLTKSMAENRHLQYERFIVAYGENMKQLADSSMDVVVCTLVLCSVQSPRKVLQE 159
Query: 180 VFRVLKPGGVF 190
V RVLKPGG+
Sbjct: 160 VQRVLKPGGLL 170
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Probable methyltransferase. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9DD20|MET7B_MOUSE Methyltransferase-like protein 7B OS=Mus musculus GN=Mettl7b PE=2 SV=2 | Back alignment and function description |
|---|
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 124 HGLNAQELAKNPRLEYFIVKDLNQDQKLEFDH--------------CSFDAVVCAVSVQY 169
G + NP E F+ K + +++ L+++ S D VVC + +
Sbjct: 90 QGCKVTCVDPNPNFEKFLTKSMAENRHLQYERFIVAYGENMKQLADSSMDVVVCTLVLCS 149
Query: 170 LQQPEKVFAEVFRVLKPGGVFI 191
+Q P KV EV RVL+PGG+
Sbjct: 150 VQSPRKVLQEVQRVLRPGGLLF 171
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Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 282 | ||||||
| 296087574 | 284 | unnamed protein product [Vitis vinifera] | 0.971 | 0.964 | 0.772 | 1e-124 | |
| 225452274 | 309 | PREDICTED: uncharacterized protein LOC10 | 0.971 | 0.886 | 0.772 | 1e-124 | |
| 224055615 | 293 | predicted protein [Populus trichocarpa] | 0.982 | 0.945 | 0.731 | 1e-122 | |
| 255572056 | 287 | methyltransferase, putative [Ricinus com | 0.975 | 0.958 | 0.745 | 1e-120 | |
| 147818091 | 255 | hypothetical protein VITISV_005967 [Viti | 0.893 | 0.988 | 0.814 | 1e-119 | |
| 388495664 | 272 | unknown [Lotus japonicus] | 0.893 | 0.926 | 0.786 | 1e-116 | |
| 357504049 | 271 | hypothetical protein MTR_7g032900 [Medic | 0.932 | 0.970 | 0.705 | 1e-109 | |
| 388505784 | 271 | unknown [Medicago truncatula] | 0.932 | 0.970 | 0.698 | 1e-108 | |
| 449455906 | 295 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 0.949 | 0.673 | 1e-103 | |
| 449492907 | 295 | PREDICTED: uncharacterized LOC101221941 | 0.992 | 0.949 | 0.673 | 1e-103 |
| >gi|296087574|emb|CBI34830.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/281 (77%), Positives = 241/281 (85%), Gaps = 7/281 (2%)
Query: 7 PNPKPWHSPFPTRT-----KTKTLQPKIVSTLNDSNNETKQSSAGKIKREVLTNEGRTKL 61
PNPKPWH PT K ++ +I +++N+ NE KQSSAGKIKR VLT EGRTK
Sbjct: 6 PNPKPWHPSTPTNFSSIPFKARSFPSRIANSINE-KNEPKQSSAGKIKRLVLTQEGRTKF 64
Query: 62 NTYSDRDFYAYPRFVTHVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSYKRV 121
N Y DR+FYAYPRFVTHVD GFISTLT+LYR+ L PGSE+LDLMSSWVSHLP+E+ YKRV
Sbjct: 65 NAYPDREFYAYPRFVTHVDSGFISTLTDLYRERLSPGSEILDLMSSWVSHLPKEIEYKRV 124
Query: 122 VGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVF 181
VGHGLNAQELAKNPRL+YF VKDLNQDQKLE D C+FDAV+C VSVQYLQ PEKVFAEVF
Sbjct: 125 VGHGLNAQELAKNPRLDYFFVKDLNQDQKLESDSCNFDAVLCTVSVQYLQYPEKVFAEVF 184
Query: 182 RVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPAD 241
RVL+PGGVFIVSFSNR+FYEKAISAWRDGTAY RVQLVVQYFQCVEG+T PE +RKLPA
Sbjct: 185 RVLRPGGVFIVSFSNRLFYEKAISAWRDGTAYSRVQLVVQYFQCVEGFTQPETIRKLPA- 243
Query: 242 SAAAQEDKSPISWLMRLLGFLSGSDPFYAVIAYKNFKPVYE 282
+ AQEDK P+SW+ RLLGFLSGSDPFYAVIAYKNFKP+YE
Sbjct: 244 TNGAQEDKGPLSWIARLLGFLSGSDPFYAVIAYKNFKPLYE 284
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225452274|ref|XP_002272025.1| PREDICTED: uncharacterized protein LOC100250829 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/281 (77%), Positives = 241/281 (85%), Gaps = 7/281 (2%)
Query: 7 PNPKPWHSPFPTRT-----KTKTLQPKIVSTLNDSNNETKQSSAGKIKREVLTNEGRTKL 61
PNPKPWH PT K ++ +I +++N+ NE KQSSAGKIKR VLT EGRTK
Sbjct: 31 PNPKPWHPSTPTNFSSIPFKARSFPSRIANSINE-KNEPKQSSAGKIKRLVLTQEGRTKF 89
Query: 62 NTYSDRDFYAYPRFVTHVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSYKRV 121
N Y DR+FYAYPRFVTHVD GFISTLT+LYR+ L PGSE+LDLMSSWVSHLP+E+ YKRV
Sbjct: 90 NAYPDREFYAYPRFVTHVDSGFISTLTDLYRERLSPGSEILDLMSSWVSHLPKEIEYKRV 149
Query: 122 VGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVF 181
VGHGLNAQELAKNPRL+YF VKDLNQDQKLE D C+FDAV+C VSVQYLQ PEKVFAEVF
Sbjct: 150 VGHGLNAQELAKNPRLDYFFVKDLNQDQKLESDSCNFDAVLCTVSVQYLQYPEKVFAEVF 209
Query: 182 RVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPAD 241
RVL+PGGVFIVSFSNR+FYEKAISAWRDGTAY RVQLVVQYFQCVEG+T PE +RKLPA
Sbjct: 210 RVLRPGGVFIVSFSNRLFYEKAISAWRDGTAYSRVQLVVQYFQCVEGFTQPETIRKLPA- 268
Query: 242 SAAAQEDKSPISWLMRLLGFLSGSDPFYAVIAYKNFKPVYE 282
+ AQEDK P+SW+ RLLGFLSGSDPFYAVIAYKNFKP+YE
Sbjct: 269 TNGAQEDKGPLSWIARLLGFLSGSDPFYAVIAYKNFKPLYE 309
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224055615|ref|XP_002298567.1| predicted protein [Populus trichocarpa] gi|222845825|gb|EEE83372.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 213/291 (73%), Positives = 243/291 (83%), Gaps = 14/291 (4%)
Query: 5 IPPNPKP----WHSPFPTRTKTKTLQP---------KIVSTLNDSNNETKQSSAGKIKRE 51
I P PKP WH P +T + P K STLN+SN ET++SSAGKIKR
Sbjct: 4 IHPKPKPRLRSWHPPIVANLQTISSLPFKSRVFPATKTTSTLNESN-ETERSSAGKIKRL 62
Query: 52 VLTNEGRTKLNTYSDRDFYAYPRFVTHVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSH 111
VL+ EGRTKLN+Y DR+FY+YPRFVTHVD GFISTLTNLY++MLRP SE+LDLMSSWVSH
Sbjct: 63 VLSKEGRTKLNSYPDREFYSYPRFVTHVDDGFISTLTNLYQEMLRPDSEILDLMSSWVSH 122
Query: 112 LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ 171
LP++ YKR+VGHGLNAQELA+NPRL+YF VKDLNQDQKLE + SFDAV+C VSVQYLQ
Sbjct: 123 LPKQAVYKRIVGHGLNAQELARNPRLDYFFVKDLNQDQKLELESSSFDAVLCTVSVQYLQ 182
Query: 172 QPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTN 231
QPEKVFAEVFRVL+PGGVFIVSFSNR+FYEKAISAWRDGT Y R+QLVVQYFQCVEG+T
Sbjct: 183 QPEKVFAEVFRVLRPGGVFIVSFSNRLFYEKAISAWRDGTGYSRIQLVVQYFQCVEGFTQ 242
Query: 232 PEIVRKLPADSAAAQEDKSPISWLMRLLGFLSGSDPFYAVIAYKNFKPVYE 282
EI+RKLPA +A Q++KSP SW+MRLLG +SGSDPFYAV+AYKNFKPVYE
Sbjct: 243 AEIIRKLPAAAAGPQQEKSPFSWIMRLLGLVSGSDPFYAVVAYKNFKPVYE 293
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572056|ref|XP_002526969.1| methyltransferase, putative [Ricinus communis] gi|223533721|gb|EEF35456.1| methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 214/287 (74%), Positives = 239/287 (83%), Gaps = 12/287 (4%)
Query: 5 IPPNPKPWHSPFPTRTKT---------KTLQPKIVSTLNDSNNETKQSSAGKIKREVLTN 55
I PKPWH T +T K L +I STLN+ N+ ++SSAGKI+R LT
Sbjct: 4 IHTGPKPWHQHTATALQTSSSSLLCKRKILPLRIASTLNE--NKPQESSAGKIRRLALTQ 61
Query: 56 EGRTKLNTYSDRDFYAYPRFVTHVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQE 115
EGR KLNTY DR+FY+ PRFVTHVD GFISTLT+LY++ LRPGSE+LDLMSSWVSHLP++
Sbjct: 62 EGRIKLNTYPDREFYSVPRFVTHVDDGFISTLTDLYKERLRPGSEILDLMSSWVSHLPKD 121
Query: 116 VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEK 175
V Y RVVGHGLNAQELAKNPRL+YFIVKDLNQ QKLEF+ SFD+V+C VSVQYLQ PEK
Sbjct: 122 VKYTRVVGHGLNAQELAKNPRLDYFIVKDLNQSQKLEFETGSFDSVICTVSVQYLQHPEK 181
Query: 176 VFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIV 235
VFAEVFRVL+PGG+FIVSFSNRMFYEKAI AWRDGTAY RVQLVVQYFQC+EG+T PEIV
Sbjct: 182 VFAEVFRVLRPGGMFIVSFSNRMFYEKAIGAWRDGTAYSRVQLVVQYFQCIEGFTQPEIV 241
Query: 236 RKLPADSAAAQEDKSPISWLMRLLGFLSGSDPFYAVIAYKNFKPVYE 282
RKLPA S AQEDKS I+WLMRLLG LSGSDPFYAVIA+KNFKPVYE
Sbjct: 242 RKLPATS-GAQEDKSLINWLMRLLGLLSGSDPFYAVIAHKNFKPVYE 287
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147818091|emb|CAN73551.1| hypothetical protein VITISV_005967 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/254 (81%), Positives = 228/254 (89%), Gaps = 2/254 (0%)
Query: 29 IVSTLNDSNNETKQSSAGKIKREVLTNEGRTKLNTYSDRDFYAYPRFVTHVDGGFISTLT 88
I +++N+ NE KQSSAGKIKR VLT EGRTK N Y DR+FYAYPRFVTHVD GFISTLT
Sbjct: 4 IANSINE-KNEPKQSSAGKIKRLVLTQEGRTKFNAYPDREFYAYPRFVTHVDSGFISTLT 62
Query: 89 NLYRQMLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD 148
+LYR+ L PGSE+LDLMSSWVSHLP+E+ YKRVVGHGLNAQELAKNPRL+YF VKDLNQD
Sbjct: 63 DLYRERLSPGSEILDLMSSWVSHLPKEIEYKRVVGHGLNAQELAKNPRLDYFFVKDLNQD 122
Query: 149 QKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWR 208
QKLE D C+FDAV+C VSVQYLQ PEKVFAEVFRVL+PGGVFIVSFSNR+FYEKAISAWR
Sbjct: 123 QKLESDSCNFDAVLCTVSVQYLQYPEKVFAEVFRVLRPGGVFIVSFSNRLFYEKAISAWR 182
Query: 209 DGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPADSAAAQEDKSPISWLMRLLGFLSGSDPF 268
DGTAY RVQLVVQYFQCVEG+T PE +RKLPA + AQEDK P+SW+ RLLGFLSGSDPF
Sbjct: 183 DGTAYSRVQLVVQYFQCVEGFTQPETIRKLPA-TNGAQEDKGPLSWIARLLGFLSGSDPF 241
Query: 269 YAVIAYKNFKPVYE 282
YAVIAYKNFKP+YE
Sbjct: 242 YAVIAYKNFKPLYE 255
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388495664|gb|AFK35898.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/253 (78%), Positives = 222/253 (87%), Gaps = 1/253 (0%)
Query: 28 KIVSTLNDSNNETKQSSAGKIKREVLTNEGRTKLNTYSDRDFYAYPRFVTHVDGGFISTL 87
KIVSTLN++ QSS GKIKR VLT EGRTKLNTYSDRDFYAYPR VTHVD GFISTL
Sbjct: 18 KIVSTLNENYQTNPQSSVGKIKRLVLTQEGRTKLNTYSDRDFYAYPRLVTHVDDGFISTL 77
Query: 88 TNLYRQMLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ 147
TN+YR+ LRP +E+LD MSSW+SHLP +V YKRVVGHGLNAQELAKNPRL+YF +KDLN+
Sbjct: 78 TNVYRERLRPDTEILDFMSSWISHLPNDVKYKRVVGHGLNAQELAKNPRLDYFFIKDLNK 137
Query: 148 DQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAW 207
DQ+LE + CSFDAVVC VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAIS+W
Sbjct: 138 DQQLELESCSFDAVVCTVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISSW 197
Query: 208 RDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPADSAAAQEDKSPISWLMRLLGFLSGSDP 267
R+GTAY RVQLVVQYFQ VEG+T E+VRKLP + AQE+KSP+ W+M L G LSGSDP
Sbjct: 198 REGTAYSRVQLVVQYFQSVEGFTEAEVVRKLPT-TKGAQENKSPLGWIMGLFGLLSGSDP 256
Query: 268 FYAVIAYKNFKPV 280
FYAVIAY+NFKP+
Sbjct: 257 FYAVIAYRNFKPI 269
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357504049|ref|XP_003622313.1| hypothetical protein MTR_7g032900 [Medicago truncatula] gi|355497328|gb|AES78531.1| hypothetical protein MTR_7g032900 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/272 (70%), Positives = 226/272 (83%), Gaps = 9/272 (3%)
Query: 13 HSPFPTRTKTKTLQPKIVSTLNDSNNETKQSSA-GKIKREVLTNEGRTKLNTYSDRDFYA 71
H+ + KT T KIV TLN+++ +QSS+ GKIKR VLT EGRTKLN D++FYA
Sbjct: 6 HAIYTPHIKTPT---KIVCTLNENSQTNQQSSSVGKIKRFVLTQEGRTKLNLIQDKEFYA 62
Query: 72 YPRFVTHVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQEL 131
YPR VTHVD GFISTLTNLYR+ LRP E+LDLMSSWVSHLP +V YKRVVGHG+NAQEL
Sbjct: 63 YPRLVTHVDDGFISTLTNLYRERLRPDMEILDLMSSWVSHLPNDVKYKRVVGHGMNAQEL 122
Query: 132 AKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFI 191
AKNPRL+YF++KDLN+DQ+ EF+ C+FDAV+C VSVQYLQQPEKVFAEVFR+LKPGGVFI
Sbjct: 123 AKNPRLDYFVIKDLNKDQQFEFESCTFDAVLCTVSVQYLQQPEKVFAEVFRLLKPGGVFI 182
Query: 192 VSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPADSAAAQEDKS- 250
VSFSNRMFYEKAISAWR+GT Y RV+LVVQYFQ VEG+T E+VRKLP +DKS
Sbjct: 183 VSFSNRMFYEKAISAWREGTTYSRVRLVVQYFQSVEGFTEAEVVRKLP----TTIDDKSQ 238
Query: 251 PISWLMRLLGFLSGSDPFYAVIAYKNFKPVYE 282
P+SW+M+L G S SDPFYAVIAY+NFKP+++
Sbjct: 239 PLSWVMKLFGLFSASDPFYAVIAYRNFKPIHD 270
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388505784|gb|AFK40958.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/272 (69%), Positives = 225/272 (82%), Gaps = 9/272 (3%)
Query: 13 HSPFPTRTKTKTLQPKIVSTLNDSNNETKQSSA-GKIKREVLTNEGRTKLNTYSDRDFYA 71
H+ + KT T KIV TLN+++ +QSS+ GKIKR VLT EGRTKLN D++FYA
Sbjct: 6 HAIYTPHIKTPT---KIVCTLNENSQTNQQSSSVGKIKRFVLTQEGRTKLNLIQDKEFYA 62
Query: 72 YPRFVTHVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQEL 131
YPR VTHVD GFISTLTNLYR+ LRP E+LDL+SSWVSHLP +V YKRVVGHG+NAQEL
Sbjct: 63 YPRLVTHVDDGFISTLTNLYRERLRPDMEILDLLSSWVSHLPNDVKYKRVVGHGMNAQEL 122
Query: 132 AKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFI 191
AKNPRL+YF++KDLN+DQ+ EF+ C+FDAV+C VSVQYLQQPEKVFAEVFR+LKPGGVFI
Sbjct: 123 AKNPRLDYFVIKDLNKDQQFEFESCTFDAVLCTVSVQYLQQPEKVFAEVFRLLKPGGVFI 182
Query: 192 VSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPADSAAAQEDKS- 250
VSFSNRMFYEKAISAWR+GT Y RV+LVVQYFQ VE +T E+VRKLP +DKS
Sbjct: 183 VSFSNRMFYEKAISAWREGTTYSRVRLVVQYFQSVESFTEAEVVRKLP----TTIDDKSQ 238
Query: 251 PISWLMRLLGFLSGSDPFYAVIAYKNFKPVYE 282
P+SW+M+L G S SDPFYAVIAY+NFKP+++
Sbjct: 239 PLSWVMKLFGLFSASDPFYAVIAYRNFKPIHD 270
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455906|ref|XP_004145691.1| PREDICTED: uncharacterized protein LOC101221941 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 196/291 (67%), Positives = 225/291 (77%), Gaps = 11/291 (3%)
Query: 1 MVTIIPPNPKPWHSPFPTRTKTKTLQP--------KIVSTL--NDSNNETKQSSAGKIKR 50
M+ I PW P + K P K ++ L N N ++AG I+R
Sbjct: 1 MLAIDTSTTHPWLLPSLCSSAGKANLPRRRLLYASKTIANLKENGQTNHESTTAAGNIRR 60
Query: 51 EVLTNEGRTKLNTYSDRDFYAYPRFVTHVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVS 110
+VLT + R KLN Y DR+FY +PRFVTHVD GFISTLTNLYR+ L+PG EV DLMSSWVS
Sbjct: 61 QVLTPQERIKLNAYPDREFYTFPRFVTHVDDGFISTLTNLYRERLQPGIEVFDLMSSWVS 120
Query: 111 HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170
HLP+EV YKRVVGHGLNAQELAKN +L+YF VKDLN+DQKLE CS DAVVC VSVQYL
Sbjct: 121 HLPKEVKYKRVVGHGLNAQELAKNSQLDYFFVKDLNEDQKLELKSCSIDAVVCTVSVQYL 180
Query: 171 QQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYT 230
QQPEKVFAEVFRVLKPGGVFI+SFSNRMFYEKA+SAWRDG+AY R+QLVVQYFQCVEG+T
Sbjct: 181 QQPEKVFAEVFRVLKPGGVFIISFSNRMFYEKAVSAWRDGSAYSRLQLVVQYFQCVEGFT 240
Query: 231 NPEIVRKLPADSAAAQEDKSPISWLMRLLGFLSGSDPFYAVIAYKNFKPVY 281
PEI+RK+PA S A E SP +W++RLLG LSGSDPFYAV+A+KNFKPVY
Sbjct: 241 EPEIIRKMPASSGNA-ERNSPFNWVLRLLGLLSGSDPFYAVLAHKNFKPVY 290
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449492907|ref|XP_004159137.1| PREDICTED: uncharacterized LOC101221941 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 196/291 (67%), Positives = 225/291 (77%), Gaps = 11/291 (3%)
Query: 1 MVTIIPPNPKPWHSPFPTRTKTKTLQP--------KIVSTL--NDSNNETKQSSAGKIKR 50
M+ I PW P + K P K ++ L N N ++AG I+R
Sbjct: 1 MLAIDISTTHPWLLPSLCSSAGKANLPRRRLLYASKTIANLKENGQTNHESTTAAGNIRR 60
Query: 51 EVLTNEGRTKLNTYSDRDFYAYPRFVTHVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVS 110
+VLT + R KLN Y DR+FY +PRFVTHVD GFISTLTNLYR+ L+PG EV DLMSSWVS
Sbjct: 61 QVLTPQERIKLNAYPDREFYTFPRFVTHVDDGFISTLTNLYRERLQPGIEVFDLMSSWVS 120
Query: 111 HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170
HLP+EV YKRVVGHGLNAQELAKN +L+YF VKDLN+DQKLE CS DAVVC VSVQYL
Sbjct: 121 HLPKEVKYKRVVGHGLNAQELAKNSQLDYFFVKDLNEDQKLELKSCSIDAVVCTVSVQYL 180
Query: 171 QQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYT 230
QQPEKVFAEVFRVLKPGGVFI+SFSNRMFYEKA+SAWRDG+AY R+QLVVQYFQCVEG+T
Sbjct: 181 QQPEKVFAEVFRVLKPGGVFIISFSNRMFYEKAVSAWRDGSAYSRLQLVVQYFQCVEGFT 240
Query: 231 NPEIVRKLPADSAAAQEDKSPISWLMRLLGFLSGSDPFYAVIAYKNFKPVY 281
PEI+RK+PA S A E SP +W++RLLG LSGSDPFYAV+A+KNFKPVY
Sbjct: 241 EPEIIRKIPASSGNA-ERNSPFNWVLRLLGLLSGSDPFYAVLAHKNFKPVY 290
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 282 | ||||||
| TAIR|locus:2084238 | 273 | AT3G01660 "AT3G01660" [Arabido | 0.914 | 0.945 | 0.671 | 1.7e-91 | |
| TAIR|locus:2134333 | 317 | AT4G29590 [Arabidopsis thalian | 0.606 | 0.539 | 0.445 | 6.5e-35 | |
| UNIPROTKB|Q4KGS8 | 300 | PFL_1426 "Methyltransferase do | 0.560 | 0.526 | 0.270 | 0.00026 |
| TAIR|locus:2084238 AT3G01660 "AT3G01660" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
Identities = 184/274 (67%), Positives = 213/274 (77%)
Query: 14 SPFPTRTKTKTLQPKIVSTLN--DSNNETKQSSAGKIKREVLTNEGRTKLNTYSDRDFYA 71
SPF + K + L+P+I + N D + SSAG+I+R VL NEGRTKLN DR+FY+
Sbjct: 11 SPF--QLKPRILRPRITNISNRIDETDPRPSSSAGRIQRLVLNNEGRTKLNADPDREFYS 68
Query: 72 YPRFVTHVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQEL 131
YPRFV HVD FIS+LT LYR LRPGS VLDLMSSWVSHLP+EV Y++VVGHGLNAQEL
Sbjct: 69 YPRFVNHVDDSFISSLTELYRNRLRPGSTVLDLMSSWVSHLPEEVKYEKVVGHGLNAQEL 128
Query: 132 AKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFI 191
A+NPRL+YF VKDLN+DQK EF+ FDAV+C+V VQYLQQPEKVFAEV+RVLKPGGV I
Sbjct: 129 ARNPRLDYFFVKDLNEDQKFEFEDKYFDAVLCSVGVQYLQQPEKVFAEVYRVLKPGGVLI 188
Query: 192 VSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPADSAAAQEDKSP 251
VSFSNRMFYEKAI WRDGT Y R+QLVVQYFQ +EG+T PEI+R+ P AQ
Sbjct: 189 VSFSNRMFYEKAIRVWRDGTEYSRIQLVVQYFQSIEGFTQPEIIRQQPG----AQ----- 239
Query: 252 ISWLMRLLGFL---SGSDPFYAVIAYKNFKPVYE 282
IS L RL+GF+ S DPF AVIAYKNFKP+YE
Sbjct: 240 ISVLTRLMGFIGLASTPDPFNAVIAYKNFKPIYE 273
|
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| TAIR|locus:2134333 AT4G29590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 78/175 (44%), Positives = 105/175 (60%)
Query: 65 SDRDFYAYPRFVTHVDGGFISTLTNLYRQML----RPGSEVLDLMSSWVSHLPQEVSYKR 120
SD FY PRFVTH+D I+ LT Y ++L PG +LD+ SSWVSH P +R
Sbjct: 120 SDSTFYEAPRFVTHIDDPAIAALTKYYSKVLPQSDTPGVSILDMCSSWVSHYPPGYRQER 179
Query: 121 VVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEV 180
+VG G+N +EL +NP L +IV+DLN + L F+ SF + VSV YL +P +VF E+
Sbjct: 180 IVGMGMNEEELKRNPVLTEYIVQDLNLNSNLPFEDNSFQVITNVVSVDYLTKPLEVFKEM 239
Query: 181 FRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIV 235
R+LKPGG+ ++SFSNR F+ KAIS W +V YF G+ P+ V
Sbjct: 240 NRILKPGGLALMSFSNRCFFTKAISIWTSTGDADHALIVGSYFHYAGGFEAPQAV 294
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| UNIPROTKB|Q4KGS8 PFL_1426 "Methyltransferase domain protein" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Score = 115 (45.5 bits), Expect = 0.00026, P = 0.00026
Identities = 47/174 (27%), Positives = 75/174 (43%)
Query: 62 NTYSDRDFY-AYPRFVTHVDGGFISTLTNLYRQMLRP--GSEVLDLMSS--WVSHLPQEV 116
N Y D F+ AY + + G + + +L P G VLDL W S E
Sbjct: 62 NIYDDPIFFQAYSQMGRSLGGLDAAPEWPALQALLPPMNGLRVLDLGCGYGWFSRWASEH 121
Query: 117 SYKRVVGHGLNAQELA------KNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170
++VVG ++ + LA P ++Y +DL Q L CSFD ++++ Y+
Sbjct: 122 GARQVVGLDVSQKMLATARATTSAPNVQYQ-QEDLEQ---LRLPACSFDLAYSSLALHYI 177
Query: 171 QQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQ 224
+ +FA+V+ L PG + S + +F W+ A GR V +Q
Sbjct: 178 KDLPGLFAQVYAALVPGARLVFSIEHPIFMAPRNPGWQVD-AQGRQSWPVDSYQ 230
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 282 282 0.00083 115 3 11 22 0.36 34
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 3
No. of states in DFA: 612 (65 KB)
Total size of DFA: 215 KB (2119 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.26u 0.11s 24.37t Elapsed: 00:00:01
Total cpu time: 24.26u 0.11s 24.37t Elapsed: 00:00:01
Start: Fri May 10 04:07:23 2013 End: Fri May 10 04:07:24 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00020625001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (284 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 282 | |||
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-10 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 1e-09 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 1e-09 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-07 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 3e-07 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 4e-07 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 9e-07 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 7e-06 | |
| TIGR02081 | 194 | TIGR02081, metW, methionine biosynthesis protein M | 2e-05 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 2e-05 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 3e-05 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 4e-05 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 6e-05 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 5e-04 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 7e-04 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 7e-04 | |
| PLN02233 | 261 | PLN02233, PLN02233, ubiquinone biosynthesis methyl | 0.001 | |
| pfam07021 | 193 | pfam07021, MetW, Methionine biosynthesis protein M | 0.003 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 0.004 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-10
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 149 QKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIV 192
+ L F SFD VV ++ + +L PE+ E+ RVLKPGG ++
Sbjct: 49 EDLPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-09
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 26/144 (18%)
Query: 95 LRPGSEVLDLMS---SWVSHLPQEVSYK-RVVGHGLNAQ--ELAKN------PRLEYFIV 142
++PG VLD+ + L + V + RVVG + LAK P +E F+
Sbjct: 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVE-FVR 75
Query: 143 KDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGG----------VFIV 192
D L F SFDAV +Q+L+ P + AE+ RVL+PGG +
Sbjct: 76 GDA---DGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVW 132
Query: 193 SFSNRMFYEKAISAWRDGTAYGRV 216
+R K ++ W D A +
Sbjct: 133 HSGDRALMRKILNFWSDHFADPWL 156
|
Length = 241 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-09
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 133 KNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIV 192
K + F+V D L F SFDAV + ++ + +K E++RVLKPGG +V
Sbjct: 98 KGVQNVEFVVGDAEN---LPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLV 154
Query: 193 -SFSNRM 198
FS
Sbjct: 155 LEFSKPD 161
|
Length = 238 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-07
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 128 AQELAKN---PRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVL 184
A+E AK +E FI D+ + +L+ + SFD V+ + +L P+KV E+ RVL
Sbjct: 44 AKENAKKLGYENVE-FIQGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVL 102
Query: 185 KPGGVFIVS 193
KPGGV IVS
Sbjct: 103 KPGGVLIVS 111
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-07
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 119 KRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQ-PEKVF 177
+ A +E D + + SFD ++ + +L + +
Sbjct: 31 PVALELARKAAAALLADNVEVLKG-DAEELPPEADE--SFDVIISDPPLHHLVEDLARFL 87
Query: 178 AEVFRVLKPGGVFIVSF 194
E R+LKPGGV +++
Sbjct: 88 EEARRLLKPGGVLVLTL 104
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 4e-07
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 123 GHGLNAQELAKN--------PRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPE 174
G G+ + L + P ++ L +D + +++L P
Sbjct: 32 GTGILLRLLRERGFDVTGVDPSPAAVLIFSLFDAPDPAVLAGKYDLITAFEVLEHLPDPP 91
Query: 175 KVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWR 208
+ ++ +LKPGGV ++S + + W
Sbjct: 92 ALLQQLRELLKPGGVLLISTPLADDDARLFANWH 125
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This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 9e-07
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 128 AQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPG 187
A+ LA L+ V L+ ++ D SFD VV + + +L P V + R+LKPG
Sbjct: 37 AERLAALGLLDAVRV-RLDVLDAIDLDPGSFDVVVASNVLHHLADPRAVLRNLRRLLKPG 95
Query: 188 GVF 190
GV
Sbjct: 96 GVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 7e-06
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 157 SFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS-FSNRMFYE 201
SFD +V +++Q+ + +E+ RVLKPGG+ S F +E
Sbjct: 98 SFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHE 143
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|233713 TIGR02081, metW, methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 95 LRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPRLE------YFIVKDLNQD 148
+ PGS VLDL L K+V G+G+ E+ ++ L I DL++
Sbjct: 11 IPPGSRVLDLGCGDGELLALLRDEKQVRGYGI---EIDQDGVLACVARGVNVIQGDLDEG 67
Query: 149 QKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196
+ F SFD V+ + ++Q + PE++ E+ RV + IVSF N
Sbjct: 68 LEA-FPDKSFDYVILSQTLQATRNPEEILDEMLRVGRHA---IVSFPN 111
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized [Amino acid biosynthesis, Aspartate family]. Length = 194 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 19/112 (16%)
Query: 94 MLRPGSEVLDLMS-------SWVSHLPQEVSYKRVVGHGLN------AQELAKNPRLEYF 140
+ G +VLD+ P +V G + A++ ++ P F
Sbjct: 36 GVFKGQKVLDVACGTGDLAIELAKSAPDR---GKVTGVDFSSEMLEVAKKKSELPLNIEF 92
Query: 141 IVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIV 192
I D + L F+ SFDAV A ++ + +K E++RVLKPGG ++
Sbjct: 93 IQADA---EALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVI 141
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This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-05
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 128 AQELAKNPRLEY-FIVKDLNQDQKLEFDHCSFDAVVCA-VSVQYL--QQPEKVFAEVFRV 183
A+E ++ + F+V D L F+ SFD V+CA +S+ YL +Q + E R+
Sbjct: 36 AKERLRDKGPKVRFVVADARD---LPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARL 92
Query: 184 LKPGG 188
L+PGG
Sbjct: 93 LRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (100), Expect = 4e-05
Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 14/146 (9%)
Query: 64 YSDRDFYAYPRFVTHVDGGFISTLTNLYRQMLRPGSEVLDLM--SSWVSHLPQEVS-YKR 120
DR F+ + L ++L G VLD+ + ++ L +
Sbjct: 15 LYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLALLARLGGRGAY 74
Query: 121 VVGHGLNAQELAK---------NPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ 171
VVG L+ + LA +++ + L E D SFD V+ + + L
Sbjct: 75 VVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFE-DSASFDLVISLLVLHLLP 133
Query: 172 QPEKVFAEVFRVLKPGGVFIVSFSNR 197
P K E+ RVLKPGG ++S R
Sbjct: 134 -PAKALRELLRVLKPGGRLVLSDLLR 158
|
Length = 257 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 6e-05
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 174 EKVFAEVFRVLKPGGVFIVS 193
E+VF E FRVLKPGG F +S
Sbjct: 163 ERVFKEAFRVLKPGGRFAIS 182
|
Length = 272 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 149 QKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKA 203
+ L FD V C ++++ PE +++KPGG+ +S NR KA
Sbjct: 116 EDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINR--TLKA 168
|
Length = 243 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 7e-04
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 130 ELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGV 189
+LA PR+ F+ D L FDAV L ++ + +LKPGG
Sbjct: 46 KLALGPRIT-FVQGDAPDALDL---LEGFDAVFIGGGGGDLL---ELLDALASLLKPGGR 98
Query: 190 FIVS 193
+++
Sbjct: 99 LVLN 102
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 7e-04
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 18/65 (27%)
Query: 142 VKDLNQDQKLEFDHC----------SFDAVVCAVSVQY----LQQPEKVFAEVFRVLKPG 187
++DL +EF SFDAV ++ + + +K E++RVLKPG
Sbjct: 96 LRDLGLSGNVEFVQGDAEALPFPDNSFDAV----TIAFGLRNVPDIDKALREMYRVLKPG 151
Query: 188 GVFIV 192
G ++
Sbjct: 152 GRLVI 156
|
Length = 239 |
| >gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.001
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 150 KLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGG-VFIVSF--SNRMF 199
L FD C FDA+ ++ + K E++RVLKPG V I+ F S + F
Sbjct: 138 DLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPF 190
|
Length = 261 |
| >gnl|CDD|219269 pfam07021, MetW, Methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.003
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 93 QMLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQE---LAKNPRLEYFIVKDLNQDQ 149
+++ PGS VLDL S L K+V G G+ + I D ++
Sbjct: 9 RLIPPGSRVLDLGCGDGSLLYLLQEEKQVDGRGIELDAAGVAECVAKGLSVIQGDADKGL 68
Query: 150 KLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196
+ F SFD V+ + ++Q + P +V E+ R+ G IVSF N
Sbjct: 69 EH-FPDKSFDYVILSQTLQATRNPREVLDELLRI---GRRAIVSFPN 111
|
This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalyzed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalyzed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells. Length = 193 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.004
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 149 QKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIV 192
++L F+ SFD V + ++ KV E FRVLKPGG +
Sbjct: 108 EELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVVC 151
|
Length = 233 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 282 | |||
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.84 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.81 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.8 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.8 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.76 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.76 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.76 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.75 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.74 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.73 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.73 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.69 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.69 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.69 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.68 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.67 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.67 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.67 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.66 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.66 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.65 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.64 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.63 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.63 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.63 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.62 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.62 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.61 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.61 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.59 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.58 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.58 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.58 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.56 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.55 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.53 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.52 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.52 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.51 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.51 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.49 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.48 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.48 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.45 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.44 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.44 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.43 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.42 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.41 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.4 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.39 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.39 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.38 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.38 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.37 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.37 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.37 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.36 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.35 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.35 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.34 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.34 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.32 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.31 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.29 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.29 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.29 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.28 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.28 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.26 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.23 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.23 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.23 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.22 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.21 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.2 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.19 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.19 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.18 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.18 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.18 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.18 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.17 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.17 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.16 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.14 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.14 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.13 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.13 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.13 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.13 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.11 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.09 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.07 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.06 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.06 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.06 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.04 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.03 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.02 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.01 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.0 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.96 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.96 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.96 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.96 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.95 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.92 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.91 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.9 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.9 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.88 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.87 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.87 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.84 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.84 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.82 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.81 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.79 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.78 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.77 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.77 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.75 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.75 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.73 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.73 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.73 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.7 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.7 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.7 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.69 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.69 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.69 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.69 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.68 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.68 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.68 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.67 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.67 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.66 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.66 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.65 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.62 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.61 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.59 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.56 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.56 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.55 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.53 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.52 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.52 | |
| PLN02366 | 308 | spermidine synthase | 98.5 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.47 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.46 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.43 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.42 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.41 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.4 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.37 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.37 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.28 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.26 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.24 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.18 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.17 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.16 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 98.16 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.15 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.13 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.07 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.06 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.05 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.04 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.02 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.02 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.01 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.99 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.97 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.94 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.93 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.92 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.89 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.88 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.87 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.87 | |
| PLN02823 | 336 | spermine synthase | 97.85 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.82 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.8 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.79 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.78 | |
| PLN02476 | 278 | O-methyltransferase | 97.78 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.75 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.73 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.7 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.62 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.6 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.59 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.56 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.55 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.52 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.51 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.51 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.51 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.51 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.49 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 97.48 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.46 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.37 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.36 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.35 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.31 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.3 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.25 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.24 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.23 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.23 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.22 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.2 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.19 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.15 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.11 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.09 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 97.08 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.94 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.81 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.72 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 96.72 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.52 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.52 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 96.51 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.5 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.49 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.47 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.39 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.37 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.29 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.22 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.2 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 96.11 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.07 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.06 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.87 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.81 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 95.61 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.49 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 95.45 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 95.3 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 95.04 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 94.65 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 94.64 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 94.64 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 94.53 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 94.52 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 94.35 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 94.08 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 94.04 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 93.98 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 93.84 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 93.82 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 93.78 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 93.62 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.6 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 93.57 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 93.39 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 93.23 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 93.13 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 93.01 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 92.94 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 92.84 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 92.59 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 92.38 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 92.32 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 92.07 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 91.98 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 91.32 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 90.6 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 90.44 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 90.27 | |
| PHA01634 | 156 | hypothetical protein | 90.21 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 89.77 | |
| PRK13699 | 227 | putative methylase; Provisional | 89.47 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 89.36 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 88.79 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 88.71 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 88.51 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 87.7 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 87.65 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 86.26 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 85.63 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 84.92 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 84.84 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 84.78 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 84.26 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 83.72 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 83.65 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 83.29 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 83.23 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 83.04 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 82.32 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 82.21 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 81.61 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 81.33 | |
| PRK13699 | 227 | putative methylase; Provisional | 80.84 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 80.82 |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.1e-21 Score=160.66 Aligned_cols=94 Identities=32% Similarity=0.495 Sum_probs=81.9
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEecc
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
++.+|||+|||+|... +...+.++|+|+|+|+.||+.+++. .+|+++|. ++|||+|++||+|++++
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dA---e~LPf~D~sFD~vt~~f 127 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDA---ENLPFPDNSFDAVTISF 127 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEech---hhCCCCCCccCEEEeee
Confidence 7899999999998754 3334678999999999999776532 35788888 99999999999999999
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+|++++|.+++|+|++|||||||++++.
T Consensus 128 glrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 128 GLRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred hhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 9999999999999999999999998754
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-20 Score=156.02 Aligned_cols=150 Identities=24% Similarity=0.384 Sum_probs=71.9
Q ss_pred CCCCCeEEEeCCcccchhh---hhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHLP---QEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~---~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
..++.+|||+|||+|.... ... +..+|+|+|+|+.|++.+++ +..+.++|. +++|+++++||+|+
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da---~~lp~~d~sfD~v~ 121 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA---EDLPFPDNSFDAVT 121 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT---TB--S-TT-EEEEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH---HHhcCCCCceeEEE
Confidence 4478899999999986433 222 46799999999999976642 346778888 89999999999999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEE-E--cCchhHHHHHHhhhcCCCC------cchhhHHHHHH-hhCCCCc-
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS-F--SNRMFYEKAISAWRDGTAY------GRVQLVVQYFQ-CVEGYTN- 231 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~-~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~gF~~- 231 (282)
|++++++++|+..+++|++|+|||||++++. + |...........|...--+ ......-.|+. +...|..
T Consensus 122 ~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~ 201 (233)
T PF01209_consen 122 CSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSP 201 (233)
T ss_dssp EES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH---------------------------------
T ss_pred HHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999998754 3 2222223232223211100 00000012333 3455664
Q ss_pred hHHhhcCCCCcccccc
Q 023470 232 PEIVRKLPADSAAAQE 247 (282)
Q Consensus 232 ~ei~~~~~~~g~~~~~ 247 (282)
.++.+.+.++||....
T Consensus 202 ~~~~~~l~~~Gf~~v~ 217 (233)
T PF01209_consen 202 EELKELLEEAGFKNVE 217 (233)
T ss_dssp ----------------
T ss_pred cccccccccccccccc
Confidence 6678888888887544
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.2e-20 Score=152.17 Aligned_cols=169 Identities=18% Similarity=0.128 Sum_probs=114.5
Q ss_pred CCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCCCC-------ceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 97 PGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPRLE-------YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~~~-------~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
++.+|||+|||.|...... ..+.+|+|+|+|+++++.++... ++....+ +++....++||+|+|..||+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~---edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATV---EDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhH---HHHHhcCCCccEEEEhhHHH
Confidence 7899999999877543332 26799999999999998776332 2333333 55555458999999999999
Q ss_pred ccCCHHHHHHHHHHcccCCcEEEEEEcCchhHHHHHHhhh------cCCCCcchhhHHHHHHhhCCCCchHHhhcCCCCc
Q 023470 169 YLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWR------DGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPADS 242 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~gF~~~ei~~~~~~~g 242 (282)
|++|++.+++++.+.+||||.++++++|+.+-........ .....+ +... .-++..|+...+..++
T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gT--H~~~------k~irp~El~~~~~~~~ 207 (243)
T COG2227 136 HVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGT--HDYR------KFIKPAELIRWLLGAN 207 (243)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcc--hhHH------HhcCHHHHHHhcccCC
Confidence 9999999999999999999999999999866544332221 111111 1111 2356678888888877
Q ss_pred cccccccCchHHHHHHhccCC-CCCCeEEEEEeec
Q 023470 243 AAAQEDKSPISWLMRLLGFLS-GSDPFYAVIAYKN 276 (282)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~-~~~~~~~v~~~k~ 276 (282)
+...+............|+|+ ..+-+|.+.+.|.
T Consensus 208 ~~~~~~~g~~y~p~~~~~~l~~~~~vNy~~~~~~~ 242 (243)
T COG2227 208 LKIIDRKGLTYNPLTNSWKLSNDVSVNYMVHAQRP 242 (243)
T ss_pred ceEEeecceEeccccceEEecCCccceEEEEeecC
Confidence 766665543332223333222 3577888877663
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-19 Score=157.91 Aligned_cols=166 Identities=16% Similarity=0.084 Sum_probs=114.0
Q ss_pred CCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEecch
Q 023470 97 PGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
++.+|||||||+|...... ..+.+|+|+|+|++|++.++. ...+...++ +++++.+++||+|+|..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~da---e~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTA---EKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCH---HHhhhccCCCCEEEEhhH
Confidence 4568999999988754322 257899999999999976642 234555665 677777889999999999
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHHHHH--------HhhhcCCCCcchhhHHHHHHhhCCCCchHHhhcC
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAI--------SAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKL 238 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~gF~~~ei~~~~ 238 (282)
++|+.|+..+++++.++|||||.++++++++....... ..|... ..+. ....++..|+...+
T Consensus 208 LeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~--gth~--------~~~f~tp~eL~~lL 277 (322)
T PLN02396 208 IEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPK--GTHQ--------WSSFVTPEELSMIL 277 (322)
T ss_pred HHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCC--CCcC--------ccCCCCHHHHHHHH
Confidence 99999999999999999999999999998875432111 111100 0000 01246677788888
Q ss_pred CCCccccccccCch--HHHHHHhccCCCCCCeEEEEEeec
Q 023470 239 PADSAAAQEDKSPI--SWLMRLLGFLSGSDPFYAVIAYKN 276 (282)
Q Consensus 239 ~~~g~~~~~~~~~~--~~l~~~~~~~~~~~~~~~v~~~k~ 276 (282)
..+||......... ++..+|.+. ...+-+|++.+.|+
T Consensus 278 ~~aGf~i~~~~G~~~~p~~~~w~~~-~~~~~ny~~~~~k~ 316 (322)
T PLN02396 278 QRASVDVKEMAGFVYNPITGRWLLS-DDISVNYIAYGTKR 316 (322)
T ss_pred HHcCCeEEEEeeeEEcCcCCeEEec-CCCceeehhheecC
Confidence 88888655542211 133344442 34578888887764
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-18 Score=148.37 Aligned_cols=165 Identities=16% Similarity=0.133 Sum_probs=119.0
Q ss_pred ccccCCCCcCCccccccccccccCchhhcccCCCCCcccccccccccc-cchhHHHHHHHHHHhhCC-CCCeEEEeCCcc
Q 023470 31 STLNDSNNETKQSSAGKIKREVLTNEGRTKLNTYSDRDFYAYPRFVTH-VDGGFISTLTNLYRQMLR-PGSEVLDLMSSW 108 (282)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~ 108 (282)
.+|.|.++|.++.+..+|.+.+.......+..+++.+++-+++++... +-....+.+...+.+.++ +..+|||+|||+
T Consensus 17 ~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~d~~~~~~ar~~fl~~g~y~~l~~~i~~~l~~~l~~~~~~vLDiGcG~ 96 (272)
T PRK11088 17 NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPGDNKEMMQARRAFLDAGHYQPLRDAVANLLAERLDEKATALLDIGCGE 96 (272)
T ss_pred CEEEcCCCCCCccccCceEEeccccccCCCCCCcCHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcCCCCCeEEEECCcC
Confidence 569999999999999999999877666666667766666655555322 111233344444554444 447899999999
Q ss_pred cchhhhh---cC---CCeEEEEcCCHHHHHhCCC---CCceEEeecccccCCCCCCCceeEEEecchhhccCCHHHHHHH
Q 023470 109 VSHLPQE---VS---YKRVVGHGLNAQELAKNPR---LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAE 179 (282)
Q Consensus 109 ~~~~~~~---~~---~~~v~giD~s~~~l~~~~~---~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~l~~ 179 (282)
|.+.... .+ ...++|+|+|+.|++.+++ ...+.++|. .++|+++++||+|++.++- ..+++
T Consensus 97 G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~---~~lp~~~~sfD~I~~~~~~-------~~~~e 166 (272)
T PRK11088 97 GYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS---HRLPFADQSLDAIIRIYAP-------CKAEE 166 (272)
T ss_pred CHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec---ccCCCcCCceeEEEEecCC-------CCHHH
Confidence 8754432 22 3479999999999977653 345777887 7889999999999998752 34689
Q ss_pred HHHcccCCcEEEEEEcCchhHHHHHH
Q 023470 180 VFRVLKPGGVFIVSFSNRMFYEKAIS 205 (282)
Q Consensus 180 ~~r~LkpgG~li~~~~~~~~~~~~~~ 205 (282)
++|+|||||++++..+++....+.+.
T Consensus 167 ~~rvLkpgG~li~~~p~~~~l~el~~ 192 (272)
T PRK11088 167 LARVVKPGGIVITVTPGPRHLFELKG 192 (272)
T ss_pred HHhhccCCCEEEEEeCCCcchHHHHH
Confidence 99999999999999888755544443
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-18 Score=138.75 Aligned_cols=103 Identities=33% Similarity=0.440 Sum_probs=80.5
Q ss_pred HHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhc
Q 023470 91 YRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 91 ~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~ 169 (282)
+.....++.+|||+|||.|..+.... .+.+++|+|+|+.+++. ........+. ...+.++++||+|+|+.+|+|
T Consensus 16 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--~~~~~~~~~~---~~~~~~~~~fD~i~~~~~l~~ 90 (161)
T PF13489_consen 16 LLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--RNVVFDNFDA---QDPPFPDGSFDLIICNDVLEH 90 (161)
T ss_dssp HHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--TTSEEEEEEC---HTHHCHSSSEEEEEEESSGGG
T ss_pred HhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--hhhhhhhhhh---hhhhccccchhhHhhHHHHhh
Confidence 33335678999999999886544322 45699999999999988 2222223322 344456789999999999999
Q ss_pred cCCHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 170 LQQPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 170 ~~~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
++|+..++++++++|||||++++++++..
T Consensus 91 ~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 91 LPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred cccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 99999999999999999999999998764
|
... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-18 Score=146.91 Aligned_cols=149 Identities=24% Similarity=0.364 Sum_probs=101.0
Q ss_pred CCCCCeEEEeCCcccchhh---hhc-CCCeEEEEcCCHHHHHhCCC-----------CCceEEeecccccCCCCCCCcee
Q 023470 95 LRPGSEVLDLMSSWVSHLP---QEV-SYKRVVGHGLNAQELAKNPR-----------LEYFIVKDLNQDQKLEFDHCSFD 159 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~---~~~-~~~~v~giD~s~~~l~~~~~-----------~~~~~~~d~~~~~~l~~~~~s~D 159 (282)
+.++.+|||+|||+|.... ... +..+|+|+|+|++|++.++. ...+..+|. +++|+++++||
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~---~~lp~~~~sfD 147 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA---TDLPFDDCYFD 147 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc---ccCCCCCCCEe
Confidence 4578899999999986432 222 34699999999999976642 224566676 78899999999
Q ss_pred EEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCchh--HHHHHHhhhcCC-------CCcchhhHHHHHH-h-hCC
Q 023470 160 AVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMF--YEKAISAWRDGT-------AYGRVQLVVQYFQ-C-VEG 228 (282)
Q Consensus 160 ~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~--~~~~~~~~~~~~-------~~~~~~~~~~~~~-~-~~g 228 (282)
+|++++++||++++..++++++|+|||||++++....... .......|.... .+.... .-.|+. . ..-
T Consensus 148 ~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~l~~s~~~f 226 (261)
T PLN02233 148 AITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAK-EYEYLKSSINEY 226 (261)
T ss_pred EEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChH-HHHHHHHHHHhc
Confidence 9999999999999999999999999999999887543211 111111121100 000000 011222 2 235
Q ss_pred CCchHHhhcCCCCcccccc
Q 023470 229 YTNPEIVRKLPADSAAAQE 247 (282)
Q Consensus 229 F~~~ei~~~~~~~g~~~~~ 247 (282)
++..|+.+.+..+||....
T Consensus 227 ~s~~el~~ll~~aGF~~~~ 245 (261)
T PLN02233 227 LTGEELEKLALEAGFSSAK 245 (261)
T ss_pred CCHHHHHHHHHHCCCCEEE
Confidence 6778888888899986543
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.6e-18 Score=142.15 Aligned_cols=111 Identities=21% Similarity=0.153 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-C-CCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCce
Q 023470 81 GGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-S-YKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSF 158 (282)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~-~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~ 158 (282)
..|...+...+.....++.+|||+|||+|....... . +.+|+|+|+|++|++.++....+.+++. +.+|+++++|
T Consensus 35 ~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~---~~lp~~d~sf 111 (226)
T PRK05785 35 VRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSF---EALPFRDKSF 111 (226)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEech---hhCCCCCCCE
Confidence 345555666665555567899999999997543322 1 4799999999999998876666677777 7899999999
Q ss_pred eEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 159 DAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 159 D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|+|+++++++|++|++.+++|++|+|||. ..++++.
T Consensus 112 D~v~~~~~l~~~~d~~~~l~e~~RvLkp~-~~ile~~ 147 (226)
T PRK05785 112 DVVMSSFALHASDNIEKVIAEFTRVSRKQ-VGFIAMG 147 (226)
T ss_pred EEEEecChhhccCCHHHHHHHHHHHhcCc-eEEEEeC
Confidence 99999999999999999999999999994 3344443
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-18 Score=125.52 Aligned_cols=88 Identities=27% Similarity=0.421 Sum_probs=70.5
Q ss_pred EEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCCC-----CceEEeecccccCCCCCCCceeEEEecchhhccCCHH
Q 023470 102 LDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPRL-----EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPE 174 (282)
Q Consensus 102 LDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~-----~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~ 174 (282)
||+|||.|....... ++.+|+|+|+|+++++.+++. ..+...+. +++|+++++||+|++..+++|++++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~---~~l~~~~~sfD~v~~~~~~~~~~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDA---EDLPFPDNSFDVVFSNSVLHHLEDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBT---TSSSS-TT-EEEEEEESHGGGSSHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehH---HhCccccccccccccccceeeccCHH
Confidence 899999876443322 589999999999998765432 23677777 88999999999999999999999999
Q ss_pred HHHHHHHHcccCCcEEEE
Q 023470 175 KVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 175 ~~l~~~~r~LkpgG~li~ 192 (282)
.++++++|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-17 Score=136.88 Aligned_cols=156 Identities=22% Similarity=0.289 Sum_probs=105.9
Q ss_pred HHHHHhhCC--CCCeEEEeCCcccchhhhh---cC------CCeEEEEcCCHHHHHhCCCC-----------CceEEeec
Q 023470 88 TNLYRQMLR--PGSEVLDLMSSWVSHLPQE---VS------YKRVVGHGLNAQELAKNPRL-----------EYFIVKDL 145 (282)
Q Consensus 88 ~~~~~~~~~--~~~~vLDiGcG~~~~~~~~---~~------~~~v~giD~s~~~l~~~~~~-----------~~~~~~d~ 145 (282)
.+.+...+. +++++||++||+|...... .. ..+|+.+|+|+.||+.+++. ..|+.+|.
T Consensus 89 Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA 168 (296)
T KOG1540|consen 89 KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA 168 (296)
T ss_pred HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc
Confidence 344444444 4689999999988643322 22 38999999999999754422 24555566
Q ss_pred ccccCCCCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEE-EEEcCch--hHHHHHHhhhcC------CCCcch
Q 023470 146 NQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFI-VSFSNRM--FYEKAISAWRDG------TAYGRV 216 (282)
Q Consensus 146 ~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li-~~~~~~~--~~~~~~~~~~~~------~~~~~~ 216 (282)
++|||++++||..++.+.|..+++++++++|++|||||||++. +.+++-. ........|.-. ..+...
T Consensus 169 ---E~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd 245 (296)
T KOG1540|consen 169 ---EDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGD 245 (296)
T ss_pred ---ccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhh
Confidence 9999999999999999999999999999999999999999975 4555422 222222222111 111111
Q ss_pred hhHHHHH-HhhCCCCch-HHhhcCCCCccccc
Q 023470 217 QLVVQYF-QCVEGYTNP-EIVRKLPADSAAAQ 246 (282)
Q Consensus 217 ~~~~~~~-~~~~gF~~~-ei~~~~~~~g~~~~ 246 (282)
+..-.|+ .+..+|... ++...+..+||...
T Consensus 246 ~~sYqYLveSI~rfp~qe~f~~miedaGF~~~ 277 (296)
T KOG1540|consen 246 RKSYQYLVESIRRFPPQEEFASMIEDAGFSSV 277 (296)
T ss_pred HhhhhhHHhhhhcCCCHHHHHHHHHHcCCccc
Confidence 1122344 356889884 57788888888664
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.9e-17 Score=139.25 Aligned_cols=109 Identities=20% Similarity=0.257 Sum_probs=89.5
Q ss_pred CCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCCC---CceEEeecccccCCCCCCCceeEEEecchhhccCC
Q 023470 97 PGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPRL---EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQ 172 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~~---~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~ 172 (282)
+..+|||+|||+|...... ..+.+|+|+|+|+.|++.++.. ..+..+|+ +.+++++++||+|+++.+++|+++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~---~~~~~~~~~fD~V~s~~~l~~~~d 118 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDI---ESLPLATATFDLAWSNLAVQWCGN 118 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCc---ccCcCCCCcEEEEEECchhhhcCC
Confidence 4578999999998643322 2568999999999999876654 25677777 778888899999999999999999
Q ss_pred HHHHHHHHHHcccCCcEEEEEEcCchhHHHHHHhhh
Q 023470 173 PEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWR 208 (282)
Q Consensus 173 ~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~ 208 (282)
+..++.++.++|||||.++++.+......+....|.
T Consensus 119 ~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~ 154 (251)
T PRK10258 119 LSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQ 154 (251)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHH
Confidence 999999999999999999999877655555666664
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=141.47 Aligned_cols=171 Identities=19% Similarity=0.225 Sum_probs=109.6
Q ss_pred CCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCC---------CCCceEEeecccccCCCCCCCceeEEEecc
Q 023470 97 PGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNP---------RLEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~---------~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
++.+|||||||+|....... ....|+|+|+|+.|+.+++ ....+...++ +++++ +++||+|+|..
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~---e~lp~-~~~FD~V~s~~ 197 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI---EQLPA-LKAFDTVFSMG 197 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH---HHCCC-cCCcCEEEECC
Confidence 56899999999987654332 4457999999998875321 1234566666 67777 78899999999
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEEc---Cchh----HHHHHHhhhcCCCCcchhhHHHHHHhhCCCCchHHhhcC
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSFS---NRMF----YEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKL 238 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~ei~~~~ 238 (282)
+++|..++..++++++++|||||.++++.. .... .......+.+.............+ ..+||+..++....
T Consensus 198 vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L-~~aGF~~i~~~~~~ 276 (322)
T PRK15068 198 VLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWL-ERAGFKDVRIVDVS 276 (322)
T ss_pred hhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHH-HHcCCceEEEEeCC
Confidence 999999999999999999999999998742 1110 011111111000000111122222 34888888776554
Q ss_pred CCCccccccccCchHHHH--HHhccCCCCCCeEEEEEeec
Q 023470 239 PADSAAAQEDKSPISWLM--RLLGFLSGSDPFYAVIAYKN 276 (282)
Q Consensus 239 ~~~g~~~~~~~~~~~~l~--~~~~~~~~~~~~~~v~~~k~ 276 (282)
.. .....+...|+. .+...|...++..+|.+|-+
T Consensus 277 ~t----~~~eqr~t~w~~~~sl~~fld~~~~~~t~eg~pa 312 (322)
T PRK15068 277 VT----TTEEQRKTEWMTTESLADFLDPNDPSKTIEGYPA 312 (322)
T ss_pred CC----CccccccccCcccCcHhhcCCCCCCCCcccCCCC
Confidence 43 123334455764 66667777788877777644
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.4e-17 Score=144.81 Aligned_cols=96 Identities=22% Similarity=0.215 Sum_probs=79.3
Q ss_pred CCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++.+|||||||+|....... .+.+|+|+|+|+.|++.++. ...+.++|. .++++++++||+|++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~---~~~~~~~~~FD~V~s~ 193 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA---LNQPFEDGQFDLVWSM 193 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc---ccCCCCCCCccEEEEC
Confidence 456789999999886443222 36799999999999875432 235667776 7788889999999999
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
.+++|++|...++++++|+|||||++++..
T Consensus 194 ~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 194 ESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999999999999999999999999864
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-16 Score=139.72 Aligned_cols=172 Identities=16% Similarity=0.195 Sum_probs=105.6
Q ss_pred CCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCC---------CCCceEEeecccccCCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNP---------RLEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~---------~~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++.+|||||||+|....... ....|+|+|+|+.|+.++. ....+...++ ++++.. .+||+|+|+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~i---e~lp~~-~~FD~V~s~ 195 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGI---EQLHEL-YAFDTVFSM 195 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCH---HHCCCC-CCcCEEEEc
Confidence 357899999999987644322 3457999999999875321 1223444454 566653 589999999
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEEcC--chh-----HHHHHHhhhcCCCCcchhhHHHHHHhhCCCCchHHhhc
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN--RMF-----YEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRK 237 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~ei~~~ 237 (282)
.+++|++++..+|++++++|||||.|++++.. ... .........+.............+ ..+||+..++...
T Consensus 196 gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L-~~aGF~~V~i~~~ 274 (314)
T TIGR00452 196 GVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWL-EKVGFENFRILDV 274 (314)
T ss_pred chhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHH-HHCCCeEEEEEec
Confidence 99999999999999999999999999987431 100 000111111111111112222233 3377777766554
Q ss_pred CCCCccccccccCchHHHH--HHhccCCCCCCeEEEEEeec
Q 023470 238 LPADSAAAQEDKSPISWLM--RLLGFLSGSDPFYAVIAYKN 276 (282)
Q Consensus 238 ~~~~g~~~~~~~~~~~~l~--~~~~~~~~~~~~~~v~~~k~ 276 (282)
..-.. ...+..-||. .+...|...++..+|.+|-+
T Consensus 275 ~~tt~----~eqr~t~w~~~~sl~~~ldp~~~~~t~eg~~~ 311 (314)
T TIGR00452 275 LKTTP----EEQRKTDWILGESLEDFLDPTDPSKTLEGYDA 311 (314)
T ss_pred cCCCH----HHhhhhhhhhccchHhhcCCCCCCCcccCCCC
Confidence 44321 1222334654 55557777788888877643
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-16 Score=133.23 Aligned_cols=149 Identities=17% Similarity=0.214 Sum_probs=99.3
Q ss_pred CCCCCeEEEeCCcccchh---hhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
+.++.+|||+|||+|... +... +..+|+|+|+|+.|++.++. ...+..+|. ..+++++++||+|+
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~V~ 119 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA---MELPFDDNSFDYVT 119 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEech---hcCCCCCCCccEEE
Confidence 346789999999988643 3332 45799999999999865542 224555666 66777788999999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHHHHHHhhhc-------------CCCCcchhhHHHHHHhhCCC
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRD-------------GTAYGRVQLVVQYFQCVEGY 229 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~gF 229 (282)
+.++++|++++..+++++.++|||||.+++..............+.. ...+........ .....+
T Consensus 120 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~ 197 (231)
T TIGR02752 120 IGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQE--STRDFP 197 (231)
T ss_pred EecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHH--HHHHcC
Confidence 99999999999999999999999999998764432111111111100 000000000001 122467
Q ss_pred CchHHhhcCCCCccccccc
Q 023470 230 TNPEIVRKLPADSAAAQED 248 (282)
Q Consensus 230 ~~~ei~~~~~~~g~~~~~~ 248 (282)
+..++.+.+..+||.....
T Consensus 198 ~~~~l~~~l~~aGf~~~~~ 216 (231)
T TIGR02752 198 GMDELAEMFQEAGFKDVEV 216 (231)
T ss_pred CHHHHHHHHHHcCCCeeEE
Confidence 7788888999999976543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-16 Score=135.65 Aligned_cols=107 Identities=19% Similarity=0.260 Sum_probs=81.6
Q ss_pred HHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCC-CCCCCc
Q 023470 89 NLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKL-EFDHCS 157 (282)
Q Consensus 89 ~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l-~~~~~s 157 (282)
.++.....++.+|||+|||+|....... .+.+|+|+|+|++|++.++.. ..+..+++ .++ ++.+++
T Consensus 36 ~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~---~~l~~~~~~~ 112 (255)
T PRK11036 36 RLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAA---QDIAQHLETP 112 (255)
T ss_pred HHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCH---HHHhhhcCCC
Confidence 3333333456799999999986543322 568999999999999765432 23455555 344 355689
Q ss_pred eeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
||+|++..+++|+.++..+++++.++|||||.+++.+.+..
T Consensus 113 fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 113 VDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred CCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 99999999999999999999999999999999998876653
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-16 Score=136.64 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=80.1
Q ss_pred CCCCeEEEeCCcccchhh---hhcCCCeEEEEcCCHHHHHhCCCC-CceEEeecccccCCCCCCCceeEEEecchhhccC
Q 023470 96 RPGSEVLDLMSSWVSHLP---QEVSYKRVVGHGLNAQELAKNPRL-EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~---~~~~~~~v~giD~s~~~l~~~~~~-~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~ 171 (282)
.++.+|||||||+|.... ...++.+|+|+|+|+.|++.++.. ..+..+|+ ++++ ++++||+|+|+.++||++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~---~~~~-~~~~fD~v~~~~~l~~~~ 103 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDV---RDWK-PKPDTDVVVSNAALQWVP 103 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcCh---hhCC-CCCCceEEEEehhhhhCC
Confidence 367899999999886443 333578999999999999876543 46677776 5554 467999999999999999
Q ss_pred CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 172 QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 172 ~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++..++++++++|||||.+++.+++
T Consensus 104 d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 104 EHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 9999999999999999999998764
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.3e-16 Score=133.26 Aligned_cols=98 Identities=21% Similarity=0.278 Sum_probs=78.1
Q ss_pred CCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCCCCceeEEEecch
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
+.++.+|||||||+|...... ..+.+|+|+|+|+.|++.++. ...+...|+ ...++++++||+|++..+
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~---~~~~~~~~~FD~V~s~~~ 126 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDI---LKKDFPENTFDMIYSRDA 126 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCc---ccCCCCCCCeEEEEEhhh
Confidence 567889999999987633222 235799999999999876543 234555665 567888899999999999
Q ss_pred hhccC--CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 167 VQYLQ--QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 167 l~~~~--~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
++|++ ++..++++++++|||||.++++..
T Consensus 127 l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 127 ILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99986 788899999999999999998754
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.4e-16 Score=132.49 Aligned_cols=169 Identities=16% Similarity=0.256 Sum_probs=107.0
Q ss_pred ccccccchhHHHHHHHHHHhhCCCCCeEEEeCCcccchhh---hh--cCCCeEEEEcCCHHHHHhCCC---------CCc
Q 023470 74 RFVTHVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLP---QE--VSYKRVVGHGLNAQELAKNPR---------LEY 139 (282)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~---~~--~~~~~v~giD~s~~~l~~~~~---------~~~ 139 (282)
+.+..|+. +...+..++...++++.+|||+|||+|.... .. .++.+|+|+|+|+.|++.++. ...
T Consensus 34 ~~~p~y~~-~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~ 112 (247)
T PRK15451 34 RSVPGYSN-IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVD 112 (247)
T ss_pred hcCCChHH-HHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeE
Confidence 33444442 3444444555566788999999999887542 21 267899999999999977643 234
Q ss_pred eEEeecccccCCCCCCCceeEEEecchhhccCCH--HHHHHHHHHcccCCcEEEEEEc----CchhHHHHHHhh---hcC
Q 023470 140 FIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP--EKVFAEVFRVLKPGGVFIVSFS----NRMFYEKAISAW---RDG 210 (282)
Q Consensus 140 ~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~--~~~l~~~~r~LkpgG~li~~~~----~~~~~~~~~~~~---~~~ 210 (282)
+..+++ .+++++ .+|+|++++++||+++. ..++++++++|||||.++++.. +..........| ...
T Consensus 113 ~~~~d~---~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~ 187 (247)
T PRK15451 113 VIEGDI---RDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRA 187 (247)
T ss_pred EEeCCh---hhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHH
Confidence 555665 555553 58999999999999743 5699999999999999998632 111111112222 233
Q ss_pred CCCcchhhHH--HHHH-hhCCCCchHHhhcCCCCccccccc
Q 023470 211 TAYGRVQLVV--QYFQ-CVEGYTNPEIVRKLPADSAAAQED 248 (282)
Q Consensus 211 ~~~~~~~~~~--~~~~-~~~gF~~~ei~~~~~~~g~~~~~~ 248 (282)
.++....... .-+. ...-.+..+..+.+.++||...+.
T Consensus 188 ~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 188 NGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSEL 228 (247)
T ss_pred cCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchhHHH
Confidence 4444322211 1122 122356677888888899976554
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-16 Score=126.37 Aligned_cols=92 Identities=26% Similarity=0.374 Sum_probs=76.4
Q ss_pred CeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCC----C-----CCceEEeecccccCCC-CCCCceeEEEecch
Q 023470 99 SEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNP----R-----LEYFIVKDLNQDQKLE-FDHCSFDAVVCAVS 166 (282)
Q Consensus 99 ~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~----~-----~~~~~~~d~~~~~~l~-~~~~s~D~v~~~~~ 166 (282)
..||++|||+|.-+.-. .+..+|+++|+++.|-+.+. + ...|.+++. ++++ ++++|||+|++.++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~g---e~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADG---ENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeech---hcCcccccCCeeeEEEEEE
Confidence 45799999998754432 38899999999999875332 1 124667777 7887 88999999999999
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|+.+.|+.+.|+|+.|+|||||++++-
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 999999999999999999999999875
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=135.23 Aligned_cols=96 Identities=26% Similarity=0.238 Sum_probs=79.0
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC-----CceEEeecccccCCCCCCCceeEEEecchh
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL-----EYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~-----~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
.++.+|||||||+|... +...+..+|+|+|+|+.|++.++.. ..+..+|. +++++++++||+|+++.++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~---e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDA---EDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccH---HhCCCCCCceeEEEEcChh
Confidence 35789999999988643 2333567999999999999766532 34566666 6788888999999999999
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
+|+++++.++++++|+|||||.+++..
T Consensus 189 ~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 189 EYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred hhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999999999999999999998753
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=123.50 Aligned_cols=111 Identities=28% Similarity=0.366 Sum_probs=90.6
Q ss_pred HHHHhhCCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCCC-CceEEeecccccCCC-CCCCceeEEEec
Q 023470 89 NLYRQMLRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPRL-EYFIVKDLNQDQKLE-FDHCSFDAVVCA 164 (282)
Q Consensus 89 ~~~~~~~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~-~~~~~~d~~~~~~l~-~~~~s~D~v~~~ 164 (282)
+.+.+.++++.+|||+|||.|..+.... .+.+.+|+|++++.+..+-.+ ...+++|++ +.|. +++++||.|+++
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld--~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLD--EGLADFPDQSFDYVILS 82 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHH--HhHhhCCCCCccEEehH
Confidence 3456678899999999999887665443 688999999999988765443 357888886 4554 899999999999
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHHHHH
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAI 204 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~ 204 (282)
.+|+++.+++.+|+|+.|+ |...++++||..++....
T Consensus 83 qtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~ 119 (193)
T PF07021_consen 83 QTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRL 119 (193)
T ss_pred hHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHH
Confidence 9999999999999999988 778999999975554433
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-16 Score=130.19 Aligned_cols=104 Identities=19% Similarity=0.232 Sum_probs=77.1
Q ss_pred CCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCC----------ceEEeecccccCCCCCCCceeEEEecch
Q 023470 98 GSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLE----------YFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~----------~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
+.+|||+|||.|..-.... -+.+|+|+|++++|++.|+... .+.+.... .++.-..+.||+|+|+.+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~--~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYED--TDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhh--cchhhcccccceeeeHHH
Confidence 4789999999775433322 6799999999999998765331 11121111 122222355999999999
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHHHH
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKA 203 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~ 203 (282)
++|+.|++.+++.+.+.|||||++++++.++......
T Consensus 168 leHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~ 204 (282)
T KOG1270|consen 168 LEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFA 204 (282)
T ss_pred HHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhh
Confidence 9999999999999999999999999999887665543
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=6e-15 Score=128.65 Aligned_cols=97 Identities=33% Similarity=0.496 Sum_probs=78.8
Q ss_pred hCCCCCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEE
Q 023470 94 MLRPGSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
.+.++.+|||+|||.|.. ++... ...+|+|+|+|+.|++.+++ ...+...++ +.+++++++||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~---~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI---EALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch---hhCCCCCCceeEE
Confidence 356788999999998853 22222 34689999999999977653 224556666 6778888899999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+++.+++|.++...++++++|+|||||++++.
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 99999999999999999999999999999986
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-15 Score=126.08 Aligned_cols=119 Identities=24% Similarity=0.293 Sum_probs=89.1
Q ss_pred HHHHHHHhhC-CCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCC----CCceEEeecccccCCCCCCCc
Q 023470 86 TLTNLYRQML-RPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPR----LEYFIVKDLNQDQKLEFDHCS 157 (282)
Q Consensus 86 ~~~~~~~~~~-~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~----~~~~~~~d~~~~~~l~~~~~s 157 (282)
.+.+.+.... ..+.+|||+|||+|.. ++...+..+++|+|+|+.++..++. ...+...|+ ..+++++++
T Consensus 22 ~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~ 98 (240)
T TIGR02072 22 RLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDA---EKLPLEDSS 98 (240)
T ss_pred HHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecch---hhCCCCCCc
Confidence 3444444332 3457899999998864 3333456789999999999865543 235677777 667777889
Q ss_pred eeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHHHHHHhh
Q 023470 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAW 207 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~ 207 (282)
||+|++.++++|+.++..+++++.++|||||.++++.+...........+
T Consensus 99 fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~ 148 (240)
T TIGR02072 99 FDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSF 148 (240)
T ss_pred eeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHH
Confidence 99999999999999999999999999999999999877654444433333
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-15 Score=140.42 Aligned_cols=97 Identities=27% Similarity=0.376 Sum_probs=79.1
Q ss_pred CCCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
+.++.+|||||||+|.. ++.. .+.+|+|+|+|+.|++.++.+ ..+...|+ ..+++++++||+|+|.
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~I~s~ 339 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAEN-FDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADC---TKKTYPDNSFDVIYSR 339 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHh-cCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCc---ccCCCCCCCEEEEEEC
Confidence 34677999999998863 3332 367999999999999765422 24566666 5677778899999999
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.+++|+++++.++++++|+|||||.++++..
T Consensus 340 ~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 340 DTILHIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred CcccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999999999999999999999999998854
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-15 Score=127.14 Aligned_cols=160 Identities=14% Similarity=0.233 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhh---hh--cCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccc
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLP---QE--VSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQD 148 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~---~~--~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~ 148 (282)
+...+..+....++++.+|||+|||+|.... .. .++.+++|+|+|+.|++.++.. ..+..+|+
T Consensus 39 ~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~--- 115 (239)
T TIGR00740 39 IITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI--- 115 (239)
T ss_pred HHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECCh---
Confidence 3333444333445678899999999987543 22 2578999999999999765422 24566666
Q ss_pred cCCCCCCCceeEEEecchhhccCC--HHHHHHHHHHcccCCcEEEEEEcCc----hh---HHHHHHhhhcCCCCcchh--
Q 023470 149 QKLEFDHCSFDAVVCAVSVQYLQQ--PEKVFAEVFRVLKPGGVFIVSFSNR----MF---YEKAISAWRDGTAYGRVQ-- 217 (282)
Q Consensus 149 ~~l~~~~~s~D~v~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~~~~~----~~---~~~~~~~~~~~~~~~~~~-- 217 (282)
..++++ .+|+|++++++||+++ ...++++++|+|||||.++++.+-. .. .......|....++....
T Consensus 116 ~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 193 (239)
T TIGR00740 116 RHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEIS 193 (239)
T ss_pred hhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 556654 5899999999999963 4679999999999999999884321 11 112223333333333221
Q ss_pred hHHHHHH-hhCCCCchHHhhcCCCCcccccc
Q 023470 218 LVVQYFQ-CVEGYTNPEIVRKLPADSAAAQE 247 (282)
Q Consensus 218 ~~~~~~~-~~~gF~~~ei~~~~~~~g~~~~~ 247 (282)
...+.+. ...-++..++...+..+||....
T Consensus 194 ~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 194 QKRTALENVMRTDSIETHKARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHcCCchHH
Confidence 1112222 23457778888888888886533
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.2e-16 Score=114.46 Aligned_cols=89 Identities=25% Similarity=0.330 Sum_probs=54.2
Q ss_pred EEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCCC------ceEEeecccccCCC-CCCCceeEEEecchhhccC
Q 023470 102 LDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRLE------YFIVKDLNQDQKLE-FDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 102 LDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~~------~~~~~d~~~~~~l~-~~~~s~D~v~~~~~l~~~~ 171 (282)
||||||+|... ....+..+++|+|+|+.|++.+++.. .............. ...++||+|++++++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999987654 33447899999999999997776542 11222221101111 1225999999999999999
Q ss_pred CHHHHHHHHHHcccCCcEE
Q 023470 172 QPEKVFAEVFRVLKPGGVF 190 (282)
Q Consensus 172 ~~~~~l~~~~r~LkpgG~l 190 (282)
++..++++++++|||||.|
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-15 Score=121.65 Aligned_cols=96 Identities=26% Similarity=0.434 Sum_probs=78.7
Q ss_pred CCCeEEEeCCcccchhhh----hcCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCC--CCCCceeEEE
Q 023470 97 PGSEVLDLMSSWVSHLPQ----EVSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLE--FDHCSFDAVV 162 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~----~~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~--~~~~s~D~v~ 162 (282)
++.+|||+|||+|..... ..+..+++|+|+|++|++.++. +..+.+.|+ .+++ ++ +.||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~---~~l~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDI---EDLPQELE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBT---TCGCGCSS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeeh---hccccccC-CCeeEEE
Confidence 578999999998864332 2357899999999999976653 346778887 5565 55 7899999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+..+++|+.++..+++++.++||+||.+++....
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999999999999999999999999999988765
|
... |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.6e-15 Score=128.40 Aligned_cols=97 Identities=21% Similarity=0.296 Sum_probs=78.8
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC---CceEEeecccccCCCCCCCceeEEEecchhhc
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL---EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~---~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~ 169 (282)
.++.+|||||||+|... +...++.+|+|+|+|+.|++.++.. ..+...|+ ..+. ++++||+|+++.++||
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~---~~~~-~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADI---ASWQ-PPQALDLIFANASLQW 105 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECch---hccC-CCCCccEEEEccChhh
Confidence 46789999999988643 3334678999999999999876543 34566666 4443 3568999999999999
Q ss_pred cCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 170 LQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 170 ~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+++...++++++++|||||.+++.+++
T Consensus 106 ~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 106 LPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 999999999999999999999998764
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-14 Score=120.81 Aligned_cols=98 Identities=34% Similarity=0.436 Sum_probs=78.9
Q ss_pred CCCCCeEEEeCCcccchhh---hhc-CCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHLP---QEV-SYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~---~~~-~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
+.++.+|||+|||+|.... ... +..+++|+|+|+.+++.++.. ..+...|. ..+++++++||+|++
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~v~~ 93 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA---DGLPFPDGSFDAVRS 93 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc---ccCCCCCCCceEEEE
Confidence 4567899999999886433 222 467999999999988655432 34555565 566777889999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
..+++|+.++..++++++++|||||.+++..+
T Consensus 94 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 94 DRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred echhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 99999999999999999999999999998754
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-14 Score=122.04 Aligned_cols=109 Identities=23% Similarity=0.377 Sum_probs=78.7
Q ss_pred cchhHHHHHHHHHHh-hCCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCC------C---CceEEeecc
Q 023470 79 VDGGFISTLTNLYRQ-MLRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPR------L---EYFIVKDLN 146 (282)
Q Consensus 79 ~~~~~~~~~~~~~~~-~~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~------~---~~~~~~d~~ 146 (282)
+++.-...+...+.. .+.+|++|||||||||..+... .-+.+|+|+++|+++.+.+++ . ..+...|.
T Consensus 53 L~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~- 131 (283)
T COG2230 53 LEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY- 131 (283)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc-
Confidence 333444444444443 4779999999999998754332 236999999999998865442 1 23333443
Q ss_pred cccCCCCCCCceeEEEecchhhccCC--HHHHHHHHHHcccCCcEEEEE
Q 023470 147 QDQKLEFDHCSFDAVVCAVSVQYLQQ--PEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 147 ~~~~l~~~~~s~D~v~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~ 193 (282)
.++ .+.||-|+|..+++|+.. .+.+|+.++++|+|||++++.
T Consensus 132 --rd~---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 132 --RDF---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred --ccc---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEE
Confidence 333 345999999999999975 889999999999999998764
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=124.05 Aligned_cols=143 Identities=12% Similarity=0.041 Sum_probs=92.5
Q ss_pred CCCCeEEEeCCcccchhhhh-------cCCCeEEEEcCCHHHHHhCCCCC-----ceEEeecccccCCCCCCCceeEEEe
Q 023470 96 RPGSEVLDLMSSWVSHLPQE-------VSYKRVVGHGLNAQELAKNPRLE-----YFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~-------~~~~~v~giD~s~~~l~~~~~~~-----~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.++.+|||+|||+|...... .+..+|+|+|+|++|++.++... .+.+.+. ..++.++++||+|+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~---~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVS---DELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEec---ccccccCCCccEEEE
Confidence 35678999999988642221 12469999999999998765432 3444544 456666789999999
Q ss_pred cchhhccCCH--HHHHHHHHHcccCCcEEEEEEcCchhHHHHH---Hhh-hcCCCCcchhhHHHHHHhhCCCCchHHhhc
Q 023470 164 AVSVQYLQQP--EKVFAEVFRVLKPGGVFIVSFSNRMFYEKAI---SAW-RDGTAYGRVQLVVQYFQCVEGYTNPEIVRK 237 (282)
Q Consensus 164 ~~~l~~~~~~--~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~gF~~~ei~~~ 237 (282)
++++||+++. ..++++++|+++ |.+++....+....... ..+ .....+.+ .+......++|+..|+.+.
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~s~~~~~~~~el~~l 210 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVH---TDGLLSVRRSYTPAELAAL 210 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceee---ccchHHHHhhcCHHHHHHH
Confidence 9999999875 469999999998 45555544432111111 000 00000110 1112233478999999999
Q ss_pred CCCCcccccc
Q 023470 238 LPADSAAAQE 247 (282)
Q Consensus 238 ~~~~g~~~~~ 247 (282)
+.+ ||....
T Consensus 211 l~~-Gf~~~~ 219 (232)
T PRK06202 211 APQ-GWRVER 219 (232)
T ss_pred hhC-CCeEEe
Confidence 998 887643
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-14 Score=125.74 Aligned_cols=94 Identities=18% Similarity=0.299 Sum_probs=72.4
Q ss_pred CCCeEEEeCCcccch-------hhhhcC-----CCeEEEEcCCHHHHHhCCCC---------------------------
Q 023470 97 PGSEVLDLMSSWVSH-------LPQEVS-----YKRVVGHGLNAQELAKNPRL--------------------------- 137 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~-------~~~~~~-----~~~v~giD~s~~~l~~~~~~--------------------------- 137 (282)
++.+|||+|||+|.. +....+ ..+|+|+|+|+.|++.|+..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 457999999998852 222222 46899999999999876642
Q ss_pred --------CceEEeecccccCCCCCCCceeEEEecchhhccCCH--HHHHHHHHHcccCCcEEEEE
Q 023470 138 --------EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP--EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 138 --------~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~--~~~l~~~~r~LkpgG~li~~ 193 (282)
..|.+.|+ .+.+.++++||+|+|.++++|++++ ..++++++++|||||++++.
T Consensus 179 v~~~ir~~V~F~~~dl---~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 179 VKPELKERVRFAKHNL---LAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EChHHhCcCEEeeccC---CCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 23445555 4555567899999999999999644 46999999999999999986
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-14 Score=109.72 Aligned_cols=95 Identities=27% Similarity=0.456 Sum_probs=70.3
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEec
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
|+.+|||||||+|... ++..++.+|+|+|+|++|++.+++ +..+...|+ . ..... .+.||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~-~~~~~-~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-E-FDPDF-LEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-H-GGTTT-SSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-c-cCccc-CCCCCEEEEC
Confidence 5789999999988653 333488999999999999865432 234566665 1 22232 3569999999
Q ss_pred c-hhhcc---CCHHHHHHHHHHcccCCcEEEEEE
Q 023470 165 V-SVQYL---QQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 165 ~-~l~~~---~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
. +++++ .+..++++++.+.|+|||+++++.
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9 55544 345779999999999999999975
|
... |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-14 Score=121.93 Aligned_cols=92 Identities=18% Similarity=0.253 Sum_probs=72.9
Q ss_pred eEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEecchh
Q 023470 100 EVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 100 ~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
+|||||||+|.. ++...+..+|+|+|+|+++++.++. ...+...|+ ...+++ ++||+|++..++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~---~~~~~~-~~fD~I~~~~~l 77 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDS---AKDPFP-DTYDLVFGFEVI 77 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccc---ccCCCC-CCCCEeehHHHH
Confidence 699999998864 3333456899999999999865543 124556665 333443 589999999999
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+|+.++..++++++++|||||.+++...
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 9999999999999999999999998754
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.1e-14 Score=117.57 Aligned_cols=92 Identities=24% Similarity=0.280 Sum_probs=70.0
Q ss_pred CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEecchh
Q 023470 97 PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
++.+|||+|||+|....... .+.+|+|+|+|+.|++.++.. ..+.+.|+ ..++++ ++||+|+|+.++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~---~~~~~~-~~fD~I~~~~~~ 105 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDL---NNLTFD-GEYDFILSTVVL 105 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecCh---hhCCcC-CCcCEEEEecch
Confidence 56789999999887543322 567999999999998754421 23445555 455553 679999999999
Q ss_pred hccC--CHHHHHHHHHHcccCCcEEEE
Q 023470 168 QYLQ--QPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 168 ~~~~--~~~~~l~~~~r~LkpgG~li~ 192 (282)
||++ +...+++++.++|||||.+++
T Consensus 106 ~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 106 MFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 9886 467799999999999999654
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.8e-14 Score=115.60 Aligned_cols=106 Identities=28% Similarity=0.335 Sum_probs=79.8
Q ss_pred HHhhCCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCC-CCceEEeecccccCC-CCCCCceeEEEecch
Q 023470 91 YRQMLRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPR-LEYFIVKDLNQDQKL-EFDHCSFDAVVCAVS 166 (282)
Q Consensus 91 ~~~~~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~-~~~~~~~d~~~~~~l-~~~~~s~D~v~~~~~ 166 (282)
+.+.++++.+|||+|||+|...... .....++|+|+|++|++.++. ...+...++. ..+ ++++++||+|+++.+
T Consensus 7 i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~--~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 7 ILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLD--EGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred HHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhh--hcccccCCCCcCEEEEhhH
Confidence 3445667889999999998765433 245688999999999977643 3456677763 224 366789999999999
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHH
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYE 201 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~ 201 (282)
+||++++..+++++.|+++ .+++++|+.....
T Consensus 85 l~~~~d~~~~l~e~~r~~~---~~ii~~p~~~~~~ 116 (194)
T TIGR02081 85 LQATRNPEEILDEMLRVGR---HAIVSFPNFGYWR 116 (194)
T ss_pred hHcCcCHHHHHHHHHHhCC---eEEEEcCChhHHH
Confidence 9999999999999988755 5677777754443
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.51 E-value=4e-14 Score=122.90 Aligned_cols=93 Identities=25% Similarity=0.390 Sum_probs=63.7
Q ss_pred CCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCC------CC---CceEEeecccccCCCCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNP------RL---EYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~------~~---~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
++++.+|||||||||....... .+++|+|+.+|+++.+.++ +. ..+...|. .+++ .+||.|+|
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~---~~~~---~~fD~IvS 133 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDY---RDLP---GKFDRIVS 133 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-G---GG------S-SEEEE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeec---cccC---CCCCEEEE
Confidence 6689999999999987543322 3789999999998876432 22 23445554 4443 38999999
Q ss_pred cchhhcc--CCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYL--QQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~--~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
..+++|+ .+...+++++.++|||||++++.
T Consensus 134 i~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 134 IEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred EechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 9999999 46789999999999999999875
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.9e-14 Score=119.66 Aligned_cols=170 Identities=18% Similarity=0.190 Sum_probs=107.1
Q ss_pred CCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHh------CC-CCCceEEeecccccCCCCCCCceeEEEecchh
Q 023470 97 PGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAK------NP-RLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~------~~-~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
.+.+|||||||.|.+.-+.. +...|+|+|++..-..+ .- .........+.. ++++. .++||+|+|..||
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv-E~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV-EDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch-hhccc-cCCcCEEEEeeeh
Confidence 57899999999887764433 56689999999854322 11 111222221211 67776 6889999999999
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEEEc---Cc--------hhHHHHHHhhhcCCCCcchhhHHHHHHhhCCCCchHHhh
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVSFS---NR--------MFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVR 236 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~ei~~ 236 (282)
-|..+|-..|+++...|+|||.+++.+. +. ..+......|. ..........+ ..+||+..+++.
T Consensus 193 YHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~F----iPs~~~L~~wl-~r~gF~~v~~v~ 267 (315)
T PF08003_consen 193 YHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWF----IPSVAALKNWL-ERAGFKDVRCVD 267 (315)
T ss_pred hccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEE----eCCHHHHHHHH-HHcCCceEEEec
Confidence 9999999999999999999999998732 11 11111111221 01111122223 348999999988
Q ss_pred cCCCCccccccccCchH-HHHHHhccCCCCCCeEEEEEeec
Q 023470 237 KLPADSAAAQEDKSPIS-WLMRLLGFLSGSDPFYAVIAYKN 276 (282)
Q Consensus 237 ~~~~~g~~~~~~~~~~~-~l~~~~~~~~~~~~~~~v~~~k~ 276 (282)
..+-+ ..+.+++-| --..+-.+|...++..++.+|-+
T Consensus 268 ~~~Tt---~~EQR~T~Wm~~~SL~dFLDp~d~~~TiEGyPA 305 (315)
T PF08003_consen 268 VSPTT---IEEQRKTDWMDFQSLEDFLDPNDPSKTIEGYPA 305 (315)
T ss_pred CccCC---HHHhccCCCcCcccHHHhcCCCCCCCcccCCCC
Confidence 77652 222222222 23455566777788777776643
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.2e-14 Score=115.89 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=68.6
Q ss_pred CCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 97 PGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
++.+|||+|||+|...... ..+.+|+|+|+|+.|++.++.. ....+.|+ ...+++ ++||+|+++.+++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~---~~~~~~-~~fD~I~~~~~~~ 105 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDI---NAAALN-EDYDFIFSTVVFM 105 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccc---hhcccc-CCCCEEEEecccc
Confidence 4578999999998743322 2567999999999999754321 23344444 334443 5799999999999
Q ss_pred ccC--CHHHHHHHHHHcccCCcEEEEE
Q 023470 169 YLQ--QPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 169 ~~~--~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|++ +...++++++|+|||||++++.
T Consensus 106 ~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 106 FLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred cCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 985 4567999999999999996543
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-13 Score=113.08 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=72.9
Q ss_pred hCCCCCeEEEeCCcccchhhh---hcCCCeEEEEcCCHHHHHhCCCC---CceEEeecccccCCCCCCCceeEEEecchh
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQ---EVSYKRVVGHGLNAQELAKNPRL---EYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~---~~~~~~v~giD~s~~~l~~~~~~---~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
.++++.+|||+|||+|..+.. ..++.+++|+|+|++|++.++.. ..+..+++ .+ ++++++||+|+++.++
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~---~~-~~~~~sfD~V~~~~vL 115 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSL---FD-PFKDNFFDLVLTKGVL 115 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeec---cC-CCCCCCEEEEEECChh
Confidence 456778899999999875443 23578999999999999887653 34566665 44 7788999999999999
Q ss_pred hccC--CHHHHHHHHHHcccCCcEEEEE
Q 023470 168 QYLQ--QPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 168 ~~~~--~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+|++ +...++++++|++ ++.+++.
T Consensus 116 ~hl~p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 116 IHINPDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred hhCCHHHHHHHHHHHHhhc--CcEEEEE
Confidence 9995 3466999999997 4566554
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.3e-15 Score=108.50 Aligned_cols=85 Identities=28% Similarity=0.443 Sum_probs=63.7
Q ss_pred EEEeCCcccchhhhhc------CCCeEEEEcCCHHHHHhCCC-------CCceEEeecccccCCCCCCCceeEEEecc-h
Q 023470 101 VLDLMSSWVSHLPQEV------SYKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQDQKLEFDHCSFDAVVCAV-S 166 (282)
Q Consensus 101 vLDiGcG~~~~~~~~~------~~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~-~ 166 (282)
|||+|||+|..+.... +..+++|+|+|++|++.+++ ...+.+.|+ .+++..+++||+|+++. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~---~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA---RDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT---TCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH---hHCcccCCCeeEEEEcCCc
Confidence 7999999887544332 23799999999999975543 236788888 67887788999999964 5
Q ss_pred hhccC--CHHHHHHHHHHcccCCc
Q 023470 167 VQYLQ--QPEKVFAEVFRVLKPGG 188 (282)
Q Consensus 167 l~~~~--~~~~~l~~~~r~LkpgG 188 (282)
++|+. +...+++++.++|||||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 99986 34569999999999998
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-13 Score=114.17 Aligned_cols=95 Identities=33% Similarity=0.457 Sum_probs=74.9
Q ss_pred CCCeEEEeCCcccchhh---hhcC-CCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEe
Q 023470 97 PGSEVLDLMSSWVSHLP---QEVS-YKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~---~~~~-~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
++.+|||+|||.|.... ...+ ..+++|+|+++.+++.++.. ..+...|. ..+++++++||+|++
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~I~~ 127 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA---EALPFPDNSFDAVTI 127 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccc---ccCCCCCCCccEEEE
Confidence 56899999999886433 2223 58999999999988654432 24455555 555666789999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
.++++|+.++..+++++.++|+|||.+++..
T Consensus 128 ~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 128 AFGLRNVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ecccccCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 9999999999999999999999999988753
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-13 Score=128.04 Aligned_cols=95 Identities=24% Similarity=0.315 Sum_probs=75.0
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCC--CCCCceeEEEec
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLE--FDHCSFDAVVCA 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~--~~~~s~D~v~~~ 164 (282)
++.+|||+|||+|... +...++.+|+|+|+|+.|++.++.. ..+..+|. .+++ +++++||+|+++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa---~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDA---INLSSSFEKESVDTIVYS 494 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcch---HhCccccCCCCEEEEEEc
Confidence 6789999999988643 3335788999999999999765432 13345665 5565 778999999999
Q ss_pred chhhccC-------------CHHHHHHHHHHcccCCcEEEEEE
Q 023470 165 VSVQYLQ-------------QPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 165 ~~l~~~~-------------~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
.++||+. +...++++++++|||||.+++..
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 9998752 45679999999999999999874
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-13 Score=119.55 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=70.2
Q ss_pred CCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 97 PGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
++.+|||+|||+|...... ..+.+|+|+|+|+.|++.++.+ ..+...|+ ...++ +++||+|+++.+++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~---~~~~~-~~~fD~I~~~~vl~ 195 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDI---NSASI-QEEYDFILSTVVLM 195 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEech---hcccc-cCCccEEEEcchhh
Confidence 4458999999998744322 2568999999999998754321 23444555 33334 67899999999999
Q ss_pred ccC--CHHHHHHHHHHcccCCcEEEEEE
Q 023470 169 YLQ--QPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 169 ~~~--~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
|++ +...+++++.++|||||++++..
T Consensus 196 ~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 196 FLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 986 55679999999999999976643
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.1e-13 Score=108.51 Aligned_cols=96 Identities=19% Similarity=0.147 Sum_probs=73.3
Q ss_pred hhCCCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEE
Q 023470 93 QMLRPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
..++++.+|||+|||+|.. ++...+..+|+|+|+|++|++.++. ...+..++. .+++. +++||+|
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~---~~~~~-~~~fDlV 116 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRA---EEFGQ-EEKFDVV 116 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccH---hhCCC-CCCccEE
Confidence 4456688999999998853 3334578899999999999865542 134556665 45555 6789999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++.. +.+++.++++++++|||||++++....
T Consensus 117 ~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 117 TSRA----VASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred EEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 9974 457789999999999999999987543
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=109.16 Aligned_cols=95 Identities=28% Similarity=0.422 Sum_probs=75.7
Q ss_pred CCCeEEEeCCcccchhhh---hcCC-CeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCCCCceeEEEecch
Q 023470 97 PGSEVLDLMSSWVSHLPQ---EVSY-KRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~---~~~~-~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
++.+|||+|||.|..... ..+. .+++|+|+++.+++.++. ...+..+++ .++++++++||+|+++++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADA---EALPFEDNSFDAVTIAFG 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecch---hcCCCCCCcEEEEEEeee
Confidence 678999999998764332 2232 689999999998865432 235566666 556666788999999999
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
++|..++..+++++.++|+|||++++..
T Consensus 116 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 116 LRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999999999999999999999998753
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-12 Score=106.14 Aligned_cols=95 Identities=23% Similarity=0.355 Sum_probs=75.6
Q ss_pred CCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC--C-CceEEeecccccCCCCCCCceeEEEecchhhccC--
Q 023470 98 GSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR--L-EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ-- 171 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~--~-~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~-- 171 (282)
..-|||||||+|..-.... .+...+|+|||+.||+.+.. . ..++.+|+. +.+||..++||.||+..+++|+=
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG--~GlpfrpGtFDg~ISISAvQWLcnA 128 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMG--EGLPFRPGTFDGVISISAVQWLCNA 128 (270)
T ss_pred CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecC--CCCCCCCCccceEEEeeeeeeeccc
Confidence 5679999999764332221 67899999999999987653 2 367888887 78999999999999998888771
Q ss_pred -----CHH----HHHHHHHHcccCCcEEEEEE
Q 023470 172 -----QPE----KVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 172 -----~~~----~~l~~~~r~LkpgG~li~~~ 194 (282)
++. .++..++.+|++|++.++.+
T Consensus 129 ~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 129 DKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred CccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 333 27888999999999999875
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.9e-13 Score=119.99 Aligned_cols=95 Identities=25% Similarity=0.347 Sum_probs=72.7
Q ss_pred CCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCCC-----ceEEeecccccCCCCCCCceeEEEecchh
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRLE-----YFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~-----~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
+.++.+|||||||+|...... ..+.+|+|+|+|++|++.+++.. .+...|. ..+ +++||+|++..++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~---~~l---~~~fD~Ivs~~~~ 238 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDY---RDL---NGQFDRIVSVGMF 238 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECch---hhc---CCCCCEEEEeCch
Confidence 457889999999998754322 24679999999999997665432 2333333 333 4789999999999
Q ss_pred hccC--CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 168 QYLQ--QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 168 ~~~~--~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+|+. +.+.++++++++|||||.+++...
T Consensus 239 ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 239 EHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred hhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9995 457899999999999999998754
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=122.92 Aligned_cols=96 Identities=20% Similarity=0.261 Sum_probs=75.5
Q ss_pred CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCCCCceeEEEecchhhc
Q 023470 97 PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~ 169 (282)
++.+|||||||+|....... ...+|+|+|+|+.|++.++. ...+...|+.. ..+++++++||+|++.++++|
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~-~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTS-PDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccc-cccCCCCCCEEEEehhhhHHh
Confidence 46789999999886543322 45799999999999976532 23456666632 356778899999999999999
Q ss_pred cCC--HHHHHHHHHHcccCCcEEEEE
Q 023470 170 LQQ--PEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 170 ~~~--~~~~l~~~~r~LkpgG~li~~ 193 (282)
+++ ...++++++|+|||||++++.
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 986 467999999999999999886
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.1e-13 Score=105.83 Aligned_cols=123 Identities=22% Similarity=0.351 Sum_probs=81.8
Q ss_pred EEEcCCHHHHHhCCC-----------CCceEEeecccccCCCCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEE
Q 023470 122 VGHGLNAQELAKNPR-----------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVF 190 (282)
Q Consensus 122 ~giD~s~~~l~~~~~-----------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~l 190 (282)
+|+|+|++|++.+++ ...+.++|. +++|+++++||+|++.++++|++|+..++++++|+|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~---~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDA---IDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEech---hhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 489999999976531 236778887 789999999999999999999999999999999999999999
Q ss_pred EEEEcCc--hhHHHHHHhhhcCCCC---c---chhhHHHHH-HhhCCC-CchHHhhcCCCCcccccc
Q 023470 191 IVSFSNR--MFYEKAISAWRDGTAY---G---RVQLVVQYF-QCVEGY-TNPEIVRKLPADSAAAQE 247 (282)
Q Consensus 191 i~~~~~~--~~~~~~~~~~~~~~~~---~---~~~~~~~~~-~~~~gF-~~~ei~~~~~~~g~~~~~ 247 (282)
++..... .........|...... . .....-+|+ .+...| +..|+...+.++||....
T Consensus 78 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~ 144 (160)
T PLN02232 78 SILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSAC 144 (160)
T ss_pred EEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcce
Confidence 8764322 1111112222211000 0 000111233 233445 556778888889986643
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.4e-12 Score=108.94 Aligned_cols=99 Identities=21% Similarity=0.244 Sum_probs=74.7
Q ss_pred CCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCC-CCceeEEEecch
Q 023470 97 PGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFD-HCSFDAVVCAVS 166 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~-~~s~D~v~~~~~ 166 (282)
.+.+|||+|||+|...... ..+.+++|+|+|+.+++.++.. ..+...+. ..++.. .++||+|++..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSV---EDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCH---HHhhcCCCCCccEEEehhH
Confidence 4778999999987643322 1456799999999988654421 23334444 333332 378999999999
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
++|+.++..+++++.++|+|||.++++..+..
T Consensus 122 l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 153 (224)
T TIGR01983 122 LEHVPDPQAFIRACAQLLKPGGILFFSTINRT 153 (224)
T ss_pred HHhCCCHHHHHHHHHHhcCCCcEEEEEecCCC
Confidence 99999999999999999999999998876553
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.4e-13 Score=113.22 Aligned_cols=99 Identities=19% Similarity=0.211 Sum_probs=75.3
Q ss_pred CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCC-CCCCceeEEEecchh
Q 023470 97 PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLE-FDHCSFDAVVCAVSV 167 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~-~~~~s~D~v~~~~~l 167 (282)
++.+|||||||+|....... .+.+++|+|+++.+++.++.. ..+...+. ..++ ..+++||+|++..++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTA---EELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCH---HHhhhhcCCCccEEEEhhHh
Confidence 57889999999876433221 467899999999988655421 23333443 3332 245789999999999
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
+|++++..+++++.++|+|||.++++.++..
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~ 155 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTLNRN 155 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEecCCC
Confidence 9999999999999999999999999877543
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.8e-13 Score=107.42 Aligned_cols=97 Identities=21% Similarity=0.267 Sum_probs=82.9
Q ss_pred CCCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhCCCC---CceEEeecccccCCCCCCCceeEEEecchhhcc
Q 023470 97 PGSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKNPRL---EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 97 ~~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~~~~---~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~ 170 (282)
...+|.|+|||.|. .+.+..+...|+|+|-|++|+++++.. ..|..+|+ .++. ++...|+++++-+|+|+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl---~~w~-p~~~~dllfaNAvlqWl 105 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADL---RTWK-PEQPTDLLFANAVLQWL 105 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccH---hhcC-CCCccchhhhhhhhhhc
Confidence 45789999999774 456666999999999999999887643 46778887 5664 35789999999999999
Q ss_pred CCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 171 QQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 171 ~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+|..+.|..+...|.|||.|.+.+|+.
T Consensus 106 pdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 106 PDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred cccHHHHHHHHHhhCCCceEEEECCCc
Confidence 999999999999999999999998864
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.6e-12 Score=104.95 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=82.1
Q ss_pred chhHHHHHHHHHHhhCC-CCCeEEEeCCcccchhhhhc-----CCCeEEEEcCCHHHHHhCCCCC-------ceEEeecc
Q 023470 80 DGGFISTLTNLYRQMLR-PGSEVLDLMSSWVSHLPQEV-----SYKRVVGHGLNAQELAKNPRLE-------YFIVKDLN 146 (282)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~~~~~~~~~-----~~~~v~giD~s~~~l~~~~~~~-------~~~~~d~~ 146 (282)
++.|.......+..... ...+||+||||.|....... +...|+++|.|+.+++..+... ...+.|++
T Consensus 53 dR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt 132 (264)
T KOG2361|consen 53 DRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLT 132 (264)
T ss_pred hhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceecc
Confidence 34554444444332221 12379999999776543332 3489999999999987655432 44677776
Q ss_pred ccc-CCCCCCCceeEEEecchhhccC--CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 147 QDQ-KLEFDHCSFDAVVCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 147 ~~~-~l~~~~~s~D~v~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.+. .-+...+++|+|+++|+|..++ ....++++++++|||||.+++-.-+
T Consensus 133 ~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 133 SPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred chhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecc
Confidence 543 3456789999999999999995 4556999999999999999997433
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-12 Score=107.83 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=75.9
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCC--CCCCceeEEEe
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLE--FDHCSFDAVVC 163 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~--~~~~s~D~v~~ 163 (282)
++.+|||+|||+|... +...+..+|+|+|+|++|++.++. +..+..+|+. +.++ +++++||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~--~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAV--EVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHH--HHHHHHcCccccceEEE
Confidence 5678999999988653 333467899999999999865532 2345555541 2233 56789999999
Q ss_pred cchhhccC--------CHHHHHHHHHHcccCCcEEEEEEcCchhHHHHH
Q 023470 164 AVSVQYLQ--------QPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAI 204 (282)
Q Consensus 164 ~~~l~~~~--------~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~ 204 (282)
++...+.. ....++++++++|||||.+++..++.....+..
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~ 166 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYML 166 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHH
Confidence 87654322 146799999999999999999987765554433
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-12 Score=107.19 Aligned_cols=92 Identities=21% Similarity=0.131 Sum_probs=68.3
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEecc
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
.++.+|||+|||+|....... .+.+|+|+|+|++|++.+++ ...+.+.|+ ..++ ++||+|++..
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~---~~fD~ii~~~ 127 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDL---LSLC---GEFDIVVCMD 127 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh---hhCC---CCcCEEEEhh
Confidence 457899999999887543332 46799999999999976542 224555555 4443 7899999999
Q ss_pred hhhccC--CHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQ--QPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~--~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+++|++ +...+++++.+++++++.+.+.
T Consensus 128 ~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 128 VLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred HHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 999985 4567999999999876555543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=103.83 Aligned_cols=100 Identities=20% Similarity=0.261 Sum_probs=70.6
Q ss_pred CCCCCeEEEeCCcccchh---hhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC-----CCCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-----EFDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-----~~~~~s~D~v~~~~ 165 (282)
++++.+|||+|||+|... +... +...|+|+|+++ |... ....+..+|+.....+ ++.+++||+|+|..
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~~--~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~ 125 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDPI--VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDM 125 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccCC--CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCC
Confidence 567889999999988743 3332 347999999998 3221 2245677777321100 25578899999988
Q ss_pred hhhccCCH-----------HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 166 SVQYLQQP-----------EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 166 ~l~~~~~~-----------~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+.++..++ +.+++++.++|||||.+++.+...
T Consensus 126 ~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 126 APNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred CCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 77665432 458999999999999999976543
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.1e-12 Score=104.48 Aligned_cols=95 Identities=18% Similarity=0.129 Sum_probs=69.8
Q ss_pred CCCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCC--------------------CCCceEEeecccccCCCCC
Q 023470 96 RPGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNP--------------------RLEYFIVKDLNQDQKLEFD 154 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~--------------------~~~~~~~~d~~~~~~l~~~ 154 (282)
+++.+|||+|||.|.-..-. ..+.+|+|+|+|+.+++.+. ....+.++|+ .+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~---~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDF---FALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccC---CCCCcc
Confidence 46789999999988533222 27889999999999887531 1124566776 444422
Q ss_pred -CCceeEEEecchhhccC--CHHHHHHHHHHcccCCcEEEEE
Q 023470 155 -HCSFDAVVCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 155 -~~s~D~v~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.+.||.|+...+++|++ .....++.+.++|||||.+++.
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 35799999999999996 3345899999999999986554
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-12 Score=106.05 Aligned_cols=104 Identities=17% Similarity=0.192 Sum_probs=74.8
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCC---CCCCceeEEE
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLE---FDHCSFDAVV 162 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~---~~~~s~D~v~ 162 (282)
...+|||||||.|... +...+..+|+|+|++++|++.++. +..+..+|+ ..++ ++++++|.|+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~---~~~~~~~~~~~~~d~v~ 92 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDA---NELLDKFFPDGSLSKVF 92 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCH---HHHHHhhCCCCceeEEE
Confidence 4568999999988654 333477899999999999876532 234556665 3322 4567999999
Q ss_pred ecchhhccCC--------HHHHHHHHHHcccCCcEEEEEEcCchhHHHH
Q 023470 163 CAVSVQYLQQ--------PEKVFAEVFRVLKPGGVFIVSFSNRMFYEKA 203 (282)
Q Consensus 163 ~~~~l~~~~~--------~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~ 203 (282)
+++...|... .+.++++++++|||||.+++.+.+.......
T Consensus 93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~ 141 (194)
T TIGR00091 93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDM 141 (194)
T ss_pred EECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHH
Confidence 9876544322 1569999999999999999998766554443
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-12 Score=105.44 Aligned_cols=92 Identities=18% Similarity=0.264 Sum_probs=68.4
Q ss_pred eEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeeccc----ccCCCC--CCCceeEEEecchhhccCC
Q 023470 100 EVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ----DQKLEF--DHCSFDAVVCAVSVQYLQQ 172 (282)
Q Consensus 100 ~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~----~~~l~~--~~~s~D~v~~~~~l~~~~~ 172 (282)
.++|+|||+|....... ...+|+|+|+|++||..+++......++... ++..++ .++|+|+|+|..++||+ |
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF-d 114 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF-D 114 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh-c
Confidence 78999999884322222 4679999999999999887665333222211 122333 38999999999999999 8
Q ss_pred HHHHHHHHHHcccCCcEEEE
Q 023470 173 PEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 173 ~~~~l~~~~r~LkpgG~li~ 192 (282)
.+.++++++|+||+.|-++.
T Consensus 115 le~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 115 LERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred hHHHHHHHHHHcCCCCCEEE
Confidence 89999999999998875443
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-12 Score=104.57 Aligned_cols=91 Identities=23% Similarity=0.267 Sum_probs=66.4
Q ss_pred CCCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhCC------CC-CceEEeecccccCCCCCCCceeEEEecch
Q 023470 97 PGSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKNP------RL-EYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 97 ~~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~~------~~-~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
++.++||+|||.|+ +++. .+..|+++|+|+.++++.. +. ....+.|+ .+..++ +.||+|++..+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~--~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl---~~~~~~-~~yD~I~st~v 103 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLAS--QGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADL---NDFDFP-EEYDFIVSTVV 103 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHH--TT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BG---CCBS-T-TTEEEEEEESS
T ss_pred CCCcEEEcCCCCcHHHHHHHH--CCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecc---hhcccc-CCcCEEEEEEE
Confidence 56899999999886 4444 7889999999998775432 11 24566676 455554 67999999999
Q ss_pred hhccC--CHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQ--QPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~--~~~~~l~~~~r~LkpgG~li~~ 193 (282)
++|++ ..+.+++++...++|||++++.
T Consensus 104 ~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 104 FMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp GGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred eccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 99996 4456999999999999998874
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.7e-12 Score=101.78 Aligned_cols=91 Identities=16% Similarity=0.152 Sum_probs=66.6
Q ss_pred CCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCC------C--CCceEEeecccccCCCCCCCceeEEEecc
Q 023470 97 PGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNP------R--LEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~------~--~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
++.+|||+|||+|.. ++...+..+|+|+|+|++|++.++ + +..+..+|+ .+++ .+++||+|+|..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~---~~~~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRA---EDFQ-HEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecch---hhcc-ccCCccEEEehh
Confidence 478999999998853 333346689999999998875432 1 234555665 4443 357899999875
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+.+....++.++++|||||.+++...
T Consensus 118 ----~~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 118 ----LASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ----hhCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 34567889999999999999998743
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.6e-11 Score=101.01 Aligned_cols=96 Identities=19% Similarity=0.176 Sum_probs=64.9
Q ss_pred hCCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHH----hCCC--CCceEEeeccccc-CCCCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELA----KNPR--LEYFIVKDLNQDQ-KLEFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~----~~~~--~~~~~~~d~~~~~-~l~~~~~s~D~v~~ 163 (282)
.+.++.+|||+|||+|... +...+..+|+|+|+++.|++ .++. +...+.+|..... ..++. ++||+|++
T Consensus 69 ~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~ 147 (226)
T PRK04266 69 PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQ 147 (226)
T ss_pred CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEE
Confidence 3458889999999987643 33334469999999998875 3332 3345555653210 12233 56999986
Q ss_pred cchhhccCCH---HHHHHHHHHcccCCcEEEEEEc
Q 023470 164 AVSVQYLQQP---EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 164 ~~~l~~~~~~---~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.. .++ ..++++++|+|||||.++++++
T Consensus 148 d~-----~~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 148 DV-----AQPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred CC-----CChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 43 333 3468999999999999999865
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-11 Score=93.37 Aligned_cols=94 Identities=23% Similarity=0.240 Sum_probs=66.9
Q ss_pred CCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++.+|||+|||.|.. ++...+..+|+|+|+|+.+++.++.. ..+...+.. ..++....+||+|++.
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAP--EALEDSLPEPDRVFIG 95 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccc--ccChhhcCCCCEEEEC
Confidence 4567999999998864 33434568999999999988664321 233333331 1122234689999998
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
...++ ...++++++++|||||.+++++
T Consensus 96 ~~~~~---~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 96 GSGGL---LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred Ccchh---HHHHHHHHHHHcCCCCEEEEEe
Confidence 76544 3689999999999999999875
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.6e-13 Score=108.32 Aligned_cols=140 Identities=20% Similarity=0.162 Sum_probs=91.8
Q ss_pred CCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCCce---EEeecccccCCCCCCCceeEEEecchhhccCCH
Q 023470 98 GSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLEYF---IVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~---~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~ 173 (282)
-.++||+|||+|..-.... ...+++|+|||..|++++....-+ .+.+... ..-...++.||+|++..|+.++.++
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~-Fl~~~~~er~DLi~AaDVl~YlG~L 204 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVL-FLEDLTQERFDLIVAADVLPYLGAL 204 (287)
T ss_pred cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHHHHHHH-HhhhccCCcccchhhhhHHHhhcch
Confidence 4689999999875443332 356899999999999988766522 2333210 0111346789999999999999999
Q ss_pred HHHHHHHHHcccCCcEEEEEEcCchhHHHHHHhhhcCCCCcchhhHHHHHHhhCCCCchHHhhcCCC
Q 023470 174 EKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPA 240 (282)
Q Consensus 174 ~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~ei~~~~~~ 240 (282)
+.++.-+...|+|||.|.|++..-.-.... .......|.|......-.....||+.+++.+..-+
T Consensus 205 e~~~~~aa~~L~~gGlfaFSvE~l~~~~~f--~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR 269 (287)
T COG4976 205 EGLFAGAAGLLAPGGLFAFSVETLPDDGGF--VLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIR 269 (287)
T ss_pred hhHHHHHHHhcCCCceEEEEecccCCCCCe--ecchhhhhccchHHHHHHHHhcCceEEEeecccch
Confidence 999999999999999999997542111100 01112233333322222334478888877655443
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-11 Score=101.27 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=68.4
Q ss_pred ccccccccchhHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC
Q 023470 72 YPRFVTHVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL 151 (282)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l 151 (282)
+++.+..+...-.+.+.+.+.. .+++..|.|+|||.+...........|+..|+-+. +.....+|+ .++
T Consensus 48 fr~Qv~~WP~nPvd~iI~~l~~-~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~-------n~~Vtacdi---a~v 116 (219)
T PF05148_consen 48 FRQQVKKWPVNPVDVIIEWLKK-RPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP-------NPRVTACDI---ANV 116 (219)
T ss_dssp HHHHHCTSSS-HHHHHHHHHCT-S-TTS-EEEES-TT-HHHHH--S---EEEEESS-S-------STTEEES-T---TS-
T ss_pred HHHHHhcCCCCcHHHHHHHHHh-cCCCEEEEECCCchHHHHHhcccCceEEEeeccCC-------CCCEEEecC---ccC
Confidence 3334444444455555555553 24567899999998765544334568999998762 345788999 899
Q ss_pred CCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 152 EFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 152 ~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|++++++|++|++.+|... |...++.|++|+|||||.|.|.
T Consensus 117 PL~~~svDv~VfcLSLMGT-n~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 117 PLEDESVDVAVFCLSLMGT-NWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp S--TT-EEEEEEES---SS--HHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCCceeEEEEEhhhhCC-CcHHHHHHHHheeccCcEEEEE
Confidence 9999999999999998777 9999999999999999999886
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-11 Score=107.61 Aligned_cols=102 Identities=21% Similarity=0.173 Sum_probs=65.8
Q ss_pred HHHHHHHHhh-CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCC-------------ceEEeeccccc
Q 023470 85 STLTNLYRQM-LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLE-------------YFIVKDLNQDQ 149 (282)
Q Consensus 85 ~~~~~~~~~~-~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~-------------~~~~~d~~~~~ 149 (282)
+.+...+... ..++.+|||+|||+|....... .+.+|+|+|+|+.|++.++.+. .+...|+ +
T Consensus 131 ~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl---~ 207 (315)
T PLN02585 131 EKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL---E 207 (315)
T ss_pred HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch---h
Confidence 3344444332 1256799999999987543322 4679999999999997654321 2333333 2
Q ss_pred CCCCCCCceeEEEecchhhccCCHH--HHHHHHHHcccCCcEEEEEE
Q 023470 150 KLEFDHCSFDAVVCAVSVQYLQQPE--KVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 150 ~l~~~~~s~D~v~~~~~l~~~~~~~--~~l~~~~r~LkpgG~li~~~ 194 (282)
.+ +++||+|+|..+++|+++.. .+++.+.+ +.+||. ++++
T Consensus 208 ~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~ 249 (315)
T PLN02585 208 SL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISF 249 (315)
T ss_pred hc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEe
Confidence 22 57899999999999997643 46666665 455544 5554
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.4e-11 Score=101.36 Aligned_cols=95 Identities=18% Similarity=0.092 Sum_probs=69.1
Q ss_pred CCCCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCC--------------------CCCceEEeecccccCCCC
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNP--------------------RLEYFIVKDLNQDQKLEF 153 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~--------------------~~~~~~~~d~~~~~~l~~ 153 (282)
.+++.+|||+|||.|.-..-. ..+.+|+|+|+|+.+++++. ....+.++|+ .+++.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~---~~l~~ 111 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDF---FALTA 111 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcc---cCCCc
Confidence 346789999999988643322 27889999999999887531 1123455666 44432
Q ss_pred C-CCceeEEEecchhhccC--CHHHHHHHHHHcccCCcEEEE
Q 023470 154 D-HCSFDAVVCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 154 ~-~~s~D~v~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~ 192 (282)
. ...||.|+...+++|++ .....++.+.++|||||.+++
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 2 25799999999999996 345699999999999997544
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-10 Score=100.32 Aligned_cols=99 Identities=24% Similarity=0.219 Sum_probs=67.6
Q ss_pred CCCCCeEEEeCCcccc---hhhhhc-CCCeEEEEcCCHH----HHHhCC--CCCceEEeecccccCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVS---HLPQEV-SYKRVVGHGLNAQ----ELAKNP--RLEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~---~~~~~~-~~~~v~giD~s~~----~l~~~~--~~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
+.++.+|||+|||+|. +++... +...|+++|+|++ +++.++ .+...++.|...........++||+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5688999999998765 444443 3569999999986 445543 34456666653211222234589999998
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.. ...+...++.+++++|||||.|++.+.
T Consensus 210 va--~pdq~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 210 VA--QPDQARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred CC--CcchHHHHHHHHHHhccCCCEEEEEEe
Confidence 74 222334567799999999999999754
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.1e-11 Score=104.21 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=70.9
Q ss_pred HHHHHhhCCCCCeEEEeCCcccchhh--hhcCCCeEEEEcCCHHHHHhCCCCC-----ceEEeecccccCCCCCCCceeE
Q 023470 88 TNLYRQMLRPGSEVLDLMSSWVSHLP--QEVSYKRVVGHGLNAQELAKNPRLE-----YFIVKDLNQDQKLEFDHCSFDA 160 (282)
Q Consensus 88 ~~~~~~~~~~~~~vLDiGcG~~~~~~--~~~~~~~v~giD~s~~~l~~~~~~~-----~~~~~d~~~~~~l~~~~~s~D~ 160 (282)
...+.....++.+|||+|||+|.... ...+..+|+|+|+|+.|++.++.+. ...+..... ...+..+++||+
T Consensus 150 l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~-~~~~~~~~~fDl 228 (288)
T TIGR00406 150 LEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI-YLEQPIEGKADV 228 (288)
T ss_pred HHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec-ccccccCCCceE
Confidence 34445555678999999999885432 2235569999999999997665432 111111111 122334578999
Q ss_pred EEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 161 VVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 161 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|+++...+++ ..++.++.++|||||.++++-.
T Consensus 229 Vvan~~~~~l---~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 229 IVANILAEVI---KELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred EEEecCHHHH---HHHHHHHHHHcCCCcEEEEEeC
Confidence 9998765443 6789999999999999999854
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.2e-11 Score=100.11 Aligned_cols=92 Identities=17% Similarity=0.249 Sum_probs=66.5
Q ss_pred CCCCCeEEEeCCcccchh---hhhc-CCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEE
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEV-SYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~-~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
+.++.+|||+|||+|... +... ...+|+|+|+++++++.++++ ..+..+|. .......++||+|
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~---~~~~~~~~~fD~I 146 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG---KRGLEKHAPFDAI 146 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc---ccCCccCCCccEE
Confidence 346789999999988643 3322 256999999999998655421 23445555 3322235789999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
++..+++|++ .++.+.|||||++++.+.
T Consensus 147 i~~~~~~~~~------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 147 IVTAAASTIP------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred EEccCcchhh------HHHHHhcCcCcEEEEEEc
Confidence 9999988775 478899999999998754
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-10 Score=95.32 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=67.8
Q ss_pred hCCCCCeEEEeCCcccchhh---hhc-CCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeE
Q 023470 94 MLRPGSEVLDLMSSWVSHLP---QEV-SYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDA 160 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~---~~~-~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~ 160 (282)
.+.++.+|||+|||+|.... ... +..+|+++|++++|++.++++ ..+...|.. ..++...++||+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~--~~l~~~~~~~D~ 114 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP--EILFTINEKFDR 114 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh--hhHhhcCCCCCE
Confidence 35578899999999886433 222 457999999999998754321 223334431 112222467999
Q ss_pred EEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 161 VVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 161 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|++.. ...++..+++++.++|||||++++...
T Consensus 115 V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 115 IFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred EEECC---CcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 99864 334678899999999999999998754
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.2e-11 Score=103.16 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=68.1
Q ss_pred HHHHHHhhCCCCCeEEEeCCcccchhh--hhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEec
Q 023470 87 LTNLYRQMLRPGSEVLDLMSSWVSHLP--QEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 87 ~~~~~~~~~~~~~~vLDiGcG~~~~~~--~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
....+.....++.+|||+|||+|.... ...+..+|+|+|+|+.+++.++.+..... +.....++..+.+||+|+++
T Consensus 109 ~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~--~~~~~~~~~~~~~fD~Vvan 186 (250)
T PRK00517 109 CLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG--VELNVYLPQGDLKADVIVAN 186 (250)
T ss_pred HHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC--CCceEEEccCCCCcCEEEEc
Confidence 444455556688999999999875332 22244569999999999987654321100 00001122222379999998
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
...+. ...++.++.++|||||.++++.
T Consensus 187 i~~~~---~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 187 ILANP---LLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred CcHHH---HHHHHHHHHHhcCCCcEEEEEE
Confidence 65433 3568999999999999999984
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.5e-11 Score=103.42 Aligned_cols=95 Identities=14% Similarity=0.172 Sum_probs=72.5
Q ss_pred CCCeEEEeCCccc----chhh-hhcCCCeEEEEcCCHHHHHhCCC----------CCceEEeecccccCCCCCCCceeEE
Q 023470 97 PGSEVLDLMSSWV----SHLP-QEVSYKRVVGHGLNAQELAKNPR----------LEYFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 97 ~~~~vLDiGcG~~----~~~~-~~~~~~~v~giD~s~~~l~~~~~----------~~~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
++.+|+|||||-| ..++ ...+..+++|+|+++++++.|++ ...|.++|+ .+.....+.||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da---~~~~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADV---MDVTESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECch---hhcccccCCcCEE
Confidence 5688999999944 2223 23478899999999998865442 235666766 3333224679999
Q ss_pred Eecchhhcc--CCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 162 VCAVSVQYL--QQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 162 ~~~~~l~~~--~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
++. +++++ .++.++++++++.|+|||.+++-..
T Consensus 200 F~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 200 FLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred EEe-cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 999 98888 5889999999999999999998753
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.5e-11 Score=96.13 Aligned_cols=94 Identities=17% Similarity=0.129 Sum_probs=66.9
Q ss_pred CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 97 PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
++.+|||+|||+|....... .+.+|+|+|+|++|++.++.+ ..+...|. ... ..++||+|+++..++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~--~~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDL---FKG--VRGKFDVILFNPPYL 93 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccc---ccc--cCCcccEEEECCCCC
Confidence 55789999999886543332 334899999999998765432 22334443 222 245899999997776
Q ss_pred ccCC---------------------HHHHHHHHHHcccCCcEEEEEEc
Q 023470 169 YLQQ---------------------PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 169 ~~~~---------------------~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+.++ .+++++++.++|||||.+++..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 94 PLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred CCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 6643 34579999999999999988754
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=103.01 Aligned_cols=112 Identities=14% Similarity=0.169 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEeCCcccchhh---hhcC-CCeEEEEcCCHHHHHhCCCC---------CceEEeecccc
Q 023470 82 GFISTLTNLYRQMLRPGSEVLDLMSSWVSHLP---QEVS-YKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQD 148 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~---~~~~-~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~ 148 (282)
.+.+.....+.+.++++.+|||+|||+|.... .... ..+|+|+|+|++||+.+.+. ...+.+|+..
T Consensus 48 ~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~- 126 (301)
T TIGR03438 48 AILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ- 126 (301)
T ss_pred HHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc-
Confidence 35555555566666777899999999987433 2222 57999999999998655321 1335667632
Q ss_pred cCCCCCCC----ceeEEEecchhhccCC--HHHHHHHHHHcccCCcEEEEEEc
Q 023470 149 QKLEFDHC----SFDAVVCAVSVQYLQQ--PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 149 ~~l~~~~~----s~D~v~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.+++... ...++++..++++++. ...+|++++++|+|||.+++.+.
T Consensus 127 -~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 127 -PLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred -hhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 1333222 3445555567887753 44589999999999999998753
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-11 Score=107.37 Aligned_cols=105 Identities=27% Similarity=0.387 Sum_probs=67.7
Q ss_pred CCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCC------------------CceEEeecccc---cCCCC
Q 023470 97 PGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRL------------------EYFIVKDLNQD---QKLEF 153 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~------------------~~~~~~d~~~~---~~l~~ 153 (282)
++.+|||+|||-|.-+..- .+-..++|+|||...|+.|+.. ..++..|.... ..++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999966544432 2567999999999887544311 12333433221 12232
Q ss_pred CCCceeEEEecchhhccC----CHHHHHHHHHHcccCCcEEEEEEcCchhHH
Q 023470 154 DHCSFDAVVCAVSVQYLQ----QPEKVFAEVFRVLKPGGVFIVSFSNRMFYE 201 (282)
Q Consensus 154 ~~~s~D~v~~~~~l~~~~----~~~~~l~~~~r~LkpgG~li~~~~~~~~~~ 201 (282)
....||+|.|.++||+.= ....+|+++.+.|||||+++.++|+.....
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~ 193 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIV 193 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHH
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHH
Confidence 335899999999999983 233499999999999999999999875553
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-10 Score=103.38 Aligned_cols=93 Identities=13% Similarity=0.091 Sum_probs=68.5
Q ss_pred CCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
+.+..+|||||||+|... ++..+..+++++|. +.+++.++. ...+..+|+ .+.+++ .+|+|+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~---~~~~~~--~~D~v~ 220 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDI---YKESYP--EADAVL 220 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCc---cCCCCC--CCCEEE
Confidence 346679999999988643 34447789999997 677755432 224556665 334444 369999
Q ss_pred ecchhhccCCH--HHHHHHHHHcccCCcEEEEE
Q 023470 163 CAVSVQYLQQP--EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 163 ~~~~l~~~~~~--~~~l~~~~r~LkpgG~li~~ 193 (282)
++.++|+..+. ..++++++++|||||++++.
T Consensus 221 ~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 221 FCRILYSANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred eEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99999988654 46999999999999999876
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.5e-11 Score=97.02 Aligned_cols=115 Identities=17% Similarity=0.306 Sum_probs=74.5
Q ss_pred CeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCCCCceeEEEecchhhccC
Q 023470 99 SEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 99 ~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~ 171 (282)
.++||+|||.|....... ...+++++|+|+.+++.++. +..+.+.++. . ..++++||+|+++.++.++.
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp---~-~~P~~~FDLIV~SEVlYYL~ 120 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVP---E-FWPEGRFDLIVLSEVLYYLD 120 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TT---T----SS-EEEEEEES-GGGSS
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCC---C-CCCCCCeeEEEEehHhHcCC
Confidence 679999999887655443 46799999999999976642 2356677763 2 24678999999999999997
Q ss_pred CH---HHHHHHHHHcccCCcEEEEEEcCchhHHHHHHhhhcCCCCcchhhHHHHHH
Q 023470 172 QP---EKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQ 224 (282)
Q Consensus 172 ~~---~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (282)
+. ..+++.+...|+|||.+++..... ..-..|....+ ...+.+.+.
T Consensus 121 ~~~~L~~~l~~l~~~L~pgG~LV~g~~rd----~~c~~wgh~~g---a~tv~~~~~ 169 (201)
T PF05401_consen 121 DAEDLRAALDRLVAALAPGGHLVFGHARD----ANCRRWGHAAG---AETVLEMLQ 169 (201)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEEE-H----HHHHHTT-S-----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEEecC----CcccccCcccc---hHHHHHHHH
Confidence 64 458999999999999999875432 22344764442 234444444
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.6e-11 Score=97.95 Aligned_cols=86 Identities=21% Similarity=0.243 Sum_probs=71.0
Q ss_pred CCCCeEEEeCCcccchhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCHHH
Q 023470 96 RPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEK 175 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~ 175 (282)
+....|.|+|||.+..... ....|+.+|+-+ .+..++.+|+ .++|++|+|+|++|++.+|.-. |+..
T Consensus 179 ~~~~vIaD~GCGEakiA~~--~~~kV~SfDL~a-------~~~~V~~cDm---~~vPl~d~svDvaV~CLSLMgt-n~~d 245 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIASS--ERHKVHSFDLVA-------VNERVIACDM---RNVPLEDESVDVAVFCLSLMGT-NLAD 245 (325)
T ss_pred cCceEEEecccchhhhhhc--cccceeeeeeec-------CCCceeeccc---cCCcCccCcccEEEeeHhhhcc-cHHH
Confidence 3456789999997665543 446899999764 3446789999 7899999999999999888765 8999
Q ss_pred HHHHHHHcccCCcEEEEEE
Q 023470 176 VFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 176 ~l~~~~r~LkpgG~li~~~ 194 (282)
++.|++|+|||||.++|.-
T Consensus 246 f~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 246 FIKEANRILKPGGLLYIAE 264 (325)
T ss_pred HHHHHHHHhccCceEEEEe
Confidence 9999999999999999873
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.5e-10 Score=94.12 Aligned_cols=100 Identities=24% Similarity=0.314 Sum_probs=66.4
Q ss_pred hCCCCCeEEEeCCcccchh---hhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccccC---C--CCCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMSSWVSHL---PQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQK---L--EFDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~---~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~---l--~~~~~s~D~v~~~ 164 (282)
.++++.+|||+|||+|... +... +..+|+|+|+|+.+ . .....+...|+..... + .+++++||+|++.
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--~-~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--P-IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--c-CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 3467889999999988643 2222 45689999999965 1 1233455666632110 0 1346789999986
Q ss_pred chh--------hccC---CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 165 VSV--------QYLQ---QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 165 ~~l--------~~~~---~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.+. +|.. +.+.++++++++|+|||++++....
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 432 2221 2367999999999999999997543
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.8e-11 Score=96.88 Aligned_cols=106 Identities=15% Similarity=0.165 Sum_probs=84.3
Q ss_pred CCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCC--C----ceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 97 PGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRL--E----YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~--~----~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
....++|||||.|...... ..-.+++-+|.|..|++.+++. . .+.+.|- +.+++.++++|+|+++..+|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DE---E~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDE---EFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecch---hcccccccchhhhhhhhhhh
Confidence 3456899999866533222 2467899999999999877654 2 3445554 78899999999999999999
Q ss_pred ccCCHHHHHHHHHHcccCCcEEEEEEcCchhHHHHHH
Q 023470 169 YLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAIS 205 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~ 205 (282)
|+.|++..+..++..|||+|.++-+........+.+.
T Consensus 149 W~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~ 185 (325)
T KOG2940|consen 149 WTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRC 185 (325)
T ss_pred hhccCchHHHHHHHhcCCCccchhHHhccccHHHHHH
Confidence 9999999999999999999999988777666665553
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-10 Score=104.26 Aligned_cols=106 Identities=18% Similarity=0.266 Sum_probs=74.3
Q ss_pred CCeEEEeCCcccchhhh---hcCCCeEEEEcCCHHHHHhCC------C--CCceEEeecccccCCCCCCCceeEEEecch
Q 023470 98 GSEVLDLMSSWVSHLPQ---EVSYKRVVGHGLNAQELAKNP------R--LEYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~---~~~~~~v~giD~s~~~l~~~~------~--~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
+..+||||||.|..+.. ..+...++|+|+++.|++.+. + +..+..+|+.. ..-.++++++|.|++++.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~-ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARL-LLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHH-hhhhCCCCceeEEEEeCC
Confidence 45899999999875543 347889999999998875442 1 22344555421 011467899999998765
Q ss_pred hhccCCH------HHHHHHHHHcccCCcEEEEEEcCchhHHHHH
Q 023470 167 VQYLQQP------EKVFAEVFRVLKPGGVFIVSFSNRMFYEKAI 204 (282)
Q Consensus 167 l~~~~~~------~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~ 204 (282)
.-|.... ..++++++|+|||||.+.+.+.+..+.....
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~ 245 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSL 245 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHH
Confidence 4443222 5799999999999999999887765554443
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-10 Score=94.14 Aligned_cols=93 Identities=17% Similarity=0.139 Sum_probs=66.4
Q ss_pred CCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
+.++.+|||+|||+|... +...+..+|+++|+|+.+++.++++ ..+...+. ..++ .++||+|++
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~----~~~~-~~~~D~v~~ 103 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA----PIEL-PGKADAIFI 103 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc----hhhc-CcCCCEEEE
Confidence 346789999999988643 3334668999999999988665422 12223332 1233 357999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
....++ ...++++++++|||||++++...
T Consensus 104 ~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 104 GGSGGN---LTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred CCCccC---HHHHHHHHHHhcCCCeEEEEEEe
Confidence 876543 47789999999999999998753
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-10 Score=97.45 Aligned_cols=87 Identities=22% Similarity=0.165 Sum_probs=61.9
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEecc
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
.++.+|||+|||+|....... .+..|+|+|+|+.|++.++.. ..+...| ++..+++||+|++..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d------~~~~~~~fD~v~~~~ 135 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD------LESLLGRFDTVVCLD 135 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC------chhccCCcCEEEEcc
Confidence 467899999999886443322 456899999999998765432 2333333 333467899999999
Q ss_pred hhhccCC--HHHHHHHHHHcccCCc
Q 023470 166 SVQYLQQ--PEKVFAEVFRVLKPGG 188 (282)
Q Consensus 166 ~l~~~~~--~~~~l~~~~r~LkpgG 188 (282)
+++|+++ ...+++++.+.+++++
T Consensus 136 ~l~~~~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 136 VLIHYPQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred hhhcCCHHHHHHHHHHHHhhcCCeE
Confidence 9999764 4568888888775444
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-10 Score=96.84 Aligned_cols=92 Identities=18% Similarity=0.204 Sum_probs=66.1
Q ss_pred CCCCCeEEEeCCcccchhh---hhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHLP---QEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~---~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
+.++.+|||||||+|.... ... ...+|+++|+++++++.+++ +..+..+|. .....+.+.||+|+
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~---~~~~~~~~~fD~I~ 150 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG---TLGYEENAPYDRIY 150 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc---ccCCCcCCCcCEEE
Confidence 4578999999999886442 222 34799999999999876543 234555554 33334567899999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+..+.++++ ..+.+.|||||++++...
T Consensus 151 ~~~~~~~~~------~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 151 VTAAGPDIP------KPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred ECCCcccch------HHHHHhhCCCcEEEEEEc
Confidence 988765553 467789999999988753
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.7e-11 Score=101.12 Aligned_cols=113 Identities=26% Similarity=0.385 Sum_probs=81.4
Q ss_pred HHHhhCCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCC--------------CceEEeecccc---cC
Q 023470 90 LYRQMLRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRL--------------EYFIVKDLNQD---QK 150 (282)
Q Consensus 90 ~~~~~~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~--------------~~~~~~d~~~~---~~ 150 (282)
++....+++..++|+|||-|.-+..- .+-..++|+||+...+..|+.. ..|+.+|.... ..
T Consensus 110 LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~ 189 (389)
T KOG1975|consen 110 LINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL 189 (389)
T ss_pred HHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh
Confidence 34455667888999999965544332 2557899999998776554321 24566665432 33
Q ss_pred CCCCCCceeEEEecchhhccC----CHHHHHHHHHHcccCCcEEEEEEcCchhHHH
Q 023470 151 LEFDHCSFDAVVCAVSVQYLQ----QPEKVFAEVFRVLKPGGVFIVSFSNRMFYEK 202 (282)
Q Consensus 151 l~~~~~s~D~v~~~~~l~~~~----~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~ 202 (282)
+++++.+||+|-|-|++|+.= ....+|+++.+.|||||.+|-++|+......
T Consensus 190 ~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~ 245 (389)
T KOG1975|consen 190 LEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIK 245 (389)
T ss_pred ccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHH
Confidence 455666799999999999762 3344999999999999999999999765543
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.3e-10 Score=91.22 Aligned_cols=104 Identities=21% Similarity=0.248 Sum_probs=69.0
Q ss_pred HHHHHHhhCCCCCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCC
Q 023470 87 LTNLYRQMLRPGSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDH 155 (282)
Q Consensus 87 ~~~~~~~~~~~~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~ 155 (282)
+.+.+... +..+|||+|||+|. .++...+..+|+++|+|+.+++.++.+ ..+...|.. . ..++
T Consensus 23 L~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~--~--~~~~ 96 (170)
T PF05175_consen 23 LLDNLPKH--KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLF--E--ALPD 96 (170)
T ss_dssp HHHHHHHH--TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTT--T--TCCT
T ss_pred HHHHHhhc--cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccc--c--cccc
Confidence 34444444 67889999999875 334434666899999999998655421 223344432 2 2346
Q ss_pred CceeEEEecchhhccCC-----HHHHHHHHHHcccCCcEEEEEEcC
Q 023470 156 CSFDAVVCAVSVQYLQQ-----PEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 156 ~s~D~v~~~~~l~~~~~-----~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++||+|+|+-=++.-.+ ...+++++.+.|||||.+++....
T Consensus 97 ~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 97 GKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp TCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred cceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 89999999954433322 466899999999999999887654
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-10 Score=101.78 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=67.7
Q ss_pred CCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCceeEEEecchh
Q 023470 98 GSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 98 ~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
..+|||+|||+|.. ++...+..+|+++|+|+.|++.++.+ ..+...|. .. ..+++||+|+|+..+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~---~~--~~~~~fDlIvsNPPF 271 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNV---FS--DIKGRFDMIISNPPF 271 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccc---cc--ccCCCccEEEECCCc
Confidence 46899999998864 33334667999999999999765421 12333333 11 225789999999888
Q ss_pred hccC-----CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 168 QYLQ-----QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 168 ~~~~-----~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|+.. ..+.+++++.+.|||||.+++...
T Consensus 272 H~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 272 HDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred cCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 7632 346799999999999999998754
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-10 Score=103.05 Aligned_cols=93 Identities=18% Similarity=0.178 Sum_probs=65.7
Q ss_pred CCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC-----------CceEEeecccccCCCCCCCceeEEEe
Q 023470 98 GSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL-----------EYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 98 ~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~-----------~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
+.+|||+|||+|.. ++...+..+|+++|+|+.|++.++.+ ..+...|.. . .+++.+||+|+|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l--~--~~~~~~fDlIls 304 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL--S--GVEPFRFNAVLC 304 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccc--c--cCCCCCEEEEEE
Confidence 46899999998753 34444778999999999999766532 123333331 1 133468999999
Q ss_pred cchhhcc---C--CHHHHHHHHHHcccCCcEEEEEE
Q 023470 164 AVSVQYL---Q--QPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 164 ~~~l~~~---~--~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
+--+|.. . ....++++++++|||||.++++.
T Consensus 305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 8555433 2 22468999999999999999885
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.3e-10 Score=100.16 Aligned_cols=100 Identities=22% Similarity=0.242 Sum_probs=73.8
Q ss_pred CCCCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEec-
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVCA- 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~~- 164 (282)
++++.+|||+|||+|..+... ..+.+++|+|++++|+..++.+ ..+...|. .++++.+++||+|+++
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~---~~l~~~~~~~D~Iv~dP 256 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDA---TKLPLSSESVDAIATDP 256 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecch---hcCCcccCCCCEEEECC
Confidence 557889999999998754332 3578999999999998754422 23556666 6777778899999996
Q ss_pred -chhh-----c-c-CCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 165 -VSVQ-----Y-L-QQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 165 -~~l~-----~-~-~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+... + . .-...+++++.++|||||++++.++..
T Consensus 257 Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 257 PYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 2111 1 1 113679999999999999999988764
|
This family is found exclusively in the Archaea. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.5e-10 Score=94.05 Aligned_cols=92 Identities=20% Similarity=0.201 Sum_probs=64.8
Q ss_pred CCCCCeEEEeCCcccchhh---hhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHLP---QEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~---~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
+.++.+|||||||+|.... ... ...+|+++|+++++++.++.+ ..+..+|. .......++||+|+
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~---~~~~~~~~~fD~Ii 151 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDG---TQGWEPLAPYDRIY 151 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCc---ccCCcccCCCCEEE
Confidence 4578899999999887543 222 245799999999998765422 24455554 22222346899999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+.....+++ +.+.+.|||||++++.+.
T Consensus 152 ~~~~~~~~~------~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 152 VTAAGPKIP------EALIDQLKEGGILVMPVG 178 (215)
T ss_pred EcCCccccc------HHHHHhcCcCcEEEEEEc
Confidence 987765553 568899999999998754
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=89.86 Aligned_cols=96 Identities=18% Similarity=0.107 Sum_probs=64.3
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++.+|||+|||+|... +...+..+|+|+|+|++|++.++.+ ..+...|.. ..++.....+|.++..
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~--~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAP--ECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchH--HHHhhCCCCCCEEEEE
Confidence 46789999999988753 3333668999999999998765432 233444442 1122112235665442
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
. ..+...++++++++|||||++++..++.
T Consensus 117 ~----~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 117 G----GRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred C----CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 2 2356789999999999999999987654
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=92.59 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=65.3
Q ss_pred CCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
+.++.+|||+|||+|...... .+..+|+|+|+|+.+++.++.+ ..+...|+ .. .+++++||+|+++-
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~---~~-~~~~~~fD~Vi~np 109 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDW---AR-AVEFRPFDVVVSNP 109 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECch---hh-hccCCCeeEEEECC
Confidence 456789999999987643322 2345999999999998754432 12333343 22 24567899999983
Q ss_pred hhhccC---------------------CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 166 SVQYLQ---------------------QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 166 ~l~~~~---------------------~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
-..... ..+.+++++.++|||||++++....
T Consensus 110 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 110 PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 211110 1355888999999999999986443
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.9e-10 Score=98.66 Aligned_cols=105 Identities=22% Similarity=0.286 Sum_probs=71.3
Q ss_pred HHHHHHHhhCCCCCeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEee----cccccCCCCCC-Cce
Q 023470 86 TLTNLYRQMLRPGSEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKD----LNQDQKLEFDH-CSF 158 (282)
Q Consensus 86 ~~~~~~~~~~~~~~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d----~~~~~~l~~~~-~s~ 158 (282)
-..+.+.+.+.++.+|||+|||+|- ..+.+.+..+++|+|+++.+++.++.+....... ......+..+. +.|
T Consensus 151 lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~ 230 (300)
T COG2264 151 LCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPF 230 (300)
T ss_pred HHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcc
Confidence 3456667777799999999999874 3444557788999999999987766443111111 00001222233 589
Q ss_pred eEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 159 DAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 159 D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|+|+++-.-+= ...+...+.+.|||||+++++
T Consensus 231 DvIVANILA~v---l~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 231 DVIVANILAEV---LVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred cEEEehhhHHH---HHHHHHHHHHHcCCCceEEEE
Confidence 99999852211 146888999999999999998
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.3e-10 Score=80.06 Aligned_cols=91 Identities=23% Similarity=0.282 Sum_probs=68.4
Q ss_pred eEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCC--------CCCceEEeecccccCCC-CCCCceeEEEecchhh
Q 023470 100 EVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNP--------RLEYFIVKDLNQDQKLE-FDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 100 ~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~--------~~~~~~~~d~~~~~~l~-~~~~s~D~v~~~~~l~ 168 (282)
+|+|+|||.|...... ....+++++|+++.++..++ ....+...+. .+.. ...+++|+|++..+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDA---EELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcCh---hhhccccCCceEEEEEcccee
Confidence 4899999987644332 25789999999998775443 1224445555 2322 2457899999999999
Q ss_pred c-cCCHHHHHHHHHHcccCCcEEEEE
Q 023470 169 Y-LQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 169 ~-~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+ ..+...+++.+.+.|||||.++++
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9 778888999999999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=93.22 Aligned_cols=95 Identities=23% Similarity=0.311 Sum_probs=65.4
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEecc
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
.+.+|||+|||+|... +...+..+++|+|+|+.+++.++.+ ..+..+|. .. ++++++||+|+++-
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~---~~-~~~~~~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDW---FE-PLPGGKFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch---hc-cCcCCceeEEEECC
Confidence 4468999999987643 3333677999999999998765422 23445554 22 34568899999962
Q ss_pred h------hhccC--------------------CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 166 S------VQYLQ--------------------QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 166 ~------l~~~~--------------------~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
- ++++. ....+++++.++|+|||.+++...
T Consensus 163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 1 11111 123578999999999999998753
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.9e-10 Score=86.08 Aligned_cols=96 Identities=23% Similarity=0.289 Sum_probs=66.6
Q ss_pred CCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCC---------CCCceEEeecccccCC--CCCCCceeEEEec
Q 023470 98 GSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNP---------RLEYFIVKDLNQDQKL--EFDHCSFDAVVCA 164 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~---------~~~~~~~~d~~~~~~l--~~~~~s~D~v~~~ 164 (282)
|.+|||+|||.|....... ...+++|+|+++..++.++ ....+.+.|. .+. .+++++||+|+++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~---~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDA---RDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHH---HHHHHTCTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECch---hhchhhccCceeEEEEEC
Confidence 4589999999886543322 3589999999998875443 2235677776 333 3667999999999
Q ss_pred chhhcc--------CCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 165 VSVQYL--------QQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 165 ~~l~~~--------~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
--.... .....+++++.++|||||.+++.+++
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 433321 12346899999999999999988763
|
... |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-09 Score=87.99 Aligned_cols=96 Identities=24% Similarity=0.242 Sum_probs=66.2
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC----------CceEEeecccccCCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL----------EYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~----------~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++.+|||+|||.|....... .+.+++|+|+|+++++.++.+ ..+...|.. + ++.+++||+|+++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~---~-~~~~~~~d~vi~n 97 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLF---E-PFRGDKFDVILFN 97 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccc---c-cccccCceEEEEC
Confidence 467789999999876533221 368999999999998655211 334555542 2 2344589999987
Q ss_pred chhhcc---------------------CCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 165 VSVQYL---------------------QQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ~~l~~~---------------------~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
....+. .....+++++.++|||||.+++.++
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 543221 1135589999999999999988765
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.3e-10 Score=99.08 Aligned_cols=101 Identities=22% Similarity=0.300 Sum_probs=69.8
Q ss_pred HHHHHHHHhhCCCCCeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHHHhCCCCC-------ceEEeecccccCCCCCC
Q 023470 85 STLTNLYRQMLRPGSEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQELAKNPRLE-------YFIVKDLNQDQKLEFDH 155 (282)
Q Consensus 85 ~~~~~~~~~~~~~~~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l~~~~~~~-------~~~~~d~~~~~~l~~~~ 155 (282)
+-..+.+.....++.+|||+|||+|- ..+...+..+|+|+|+++.+++.++.+. .+.+.. ......
T Consensus 149 ~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~-----~~~~~~ 223 (295)
T PF06325_consen 149 RLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL-----SEDLVE 223 (295)
T ss_dssp HHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC-----TSCTCC
T ss_pred HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE-----eccccc
Confidence 33556667777888999999999874 3444557779999999999886655321 222221 122234
Q ss_pred CceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 156 CSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 156 ~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+.||+|+++-..+-+ ..++..+.++|||||.++++
T Consensus 224 ~~~dlvvANI~~~vL---~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 224 GKFDLVVANILADVL---LELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp S-EEEEEEES-HHHH---HHHHHHCHHHEEEEEEEEEE
T ss_pred ccCCEEEECCCHHHH---HHHHHHHHHhhCCCCEEEEc
Confidence 889999998654333 56788899999999999998
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-09 Score=90.24 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=63.7
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
+.++.+|||+|||+|....... ...+|+++|+++++++.++.+ ..+...|.. ..++ ..++||+|++..
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~--~~~~-~~~~fD~I~~~~ 152 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGW--KGWP-AYAPFDRILVTA 152 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcc--cCCC-cCCCcCEEEEcc
Confidence 3467899999999886432111 235899999999998655421 234444432 2222 247899999988
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.++++ .+.+.+.|+|||.+++.+.
T Consensus 153 ~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 153 AAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred Cchhh------hHHHHHhcCCCcEEEEEEc
Confidence 77665 3567899999999998865
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.96 E-value=3e-09 Score=93.27 Aligned_cols=96 Identities=20% Similarity=0.208 Sum_probs=66.0
Q ss_pred CCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEec
Q 023470 97 PGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
++.+|||+|||+|.. ++...+..+|+|+|+|+.+++.++.+ ..+..+|+. . ++++++||+|+++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~--~--~~~~~~fD~Iv~N 196 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLF--A--ALPGRKYDLIVSN 196 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchh--h--ccCCCCccEEEEC
Confidence 456899999998764 33334678999999999998765432 234555542 1 2345689999997
Q ss_pred ------chh-------hccC------------CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 165 ------VSV-------QYLQ------------QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 165 ------~~l-------~~~~------------~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
..+ +|-+ ....+++++.++|||||++++++.+
T Consensus 197 PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 197 PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 111 1111 1245789999999999999999764
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.5e-09 Score=90.29 Aligned_cols=96 Identities=22% Similarity=0.217 Sum_probs=69.0
Q ss_pred CCCeEEEeCCcccchhhhh---cCCCeEEEEcCCHHHHHhCCCC---CceEEeecccccCCCCCCCceeEEEecchhhcc
Q 023470 97 PGSEVLDLMSSWVSHLPQE---VSYKRVVGHGLNAQELAKNPRL---EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~---~~~~~v~giD~s~~~l~~~~~~---~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~ 170 (282)
...+|||+|||+|...... .+..+|+|+|+|+.|++.++.+ ..+...|+ ..+. .+.+||+|+++--+.|.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~---~e~~-~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDV---FEFE-SNEKFDVVISNPPFGKI 139 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECch---hhhc-ccCCCcEEEEcCCcccc
Confidence 4578999999988653322 2357999999999999876643 35666666 4443 24689999998666664
Q ss_pred CC--------------------HHHHHHHHHHcccCCcEEEEEEcC
Q 023470 171 QQ--------------------PEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 171 ~~--------------------~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+. ....++...++|+|+|.+++.+..
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss 185 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSG 185 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEec
Confidence 21 245677888999999988877554
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-09 Score=89.78 Aligned_cols=93 Identities=19% Similarity=0.294 Sum_probs=73.4
Q ss_pred CCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCHHHH
Q 023470 98 GSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKV 176 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~ 176 (282)
..++||||+|-|....... -..+|++.+.|+.|..+-++.. +.+.+. .++.-.+.+||+|.|.++|....+|..+
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg-~~vl~~---~~w~~~~~~fDvIscLNvLDRc~~P~~L 170 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKG-FTVLDI---DDWQQTDFKFDVISCLNVLDRCDRPLTL 170 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCC-CeEEeh---hhhhccCCceEEEeehhhhhccCCHHHH
Confidence 4679999999776544433 4578999999999986654433 455555 3444445689999999999999999999
Q ss_pred HHHHHHcccCCcEEEEEE
Q 023470 177 FAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 177 l~~~~r~LkpgG~li~~~ 194 (282)
|+.+++.|+|+|++++++
T Consensus 171 L~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 171 LRDIRRALKPNGRLILAV 188 (265)
T ss_pred HHHHHHHhCCCCEEEEEE
Confidence 999999999999999874
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.3e-09 Score=93.10 Aligned_cols=94 Identities=20% Similarity=0.245 Sum_probs=66.2
Q ss_pred CeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEec--
Q 023470 99 SEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVCA-- 164 (282)
Q Consensus 99 ~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~~-- 164 (282)
.+|||+|||+|.. ++...+..+|+|+|+|+++++.++.+ ..+..+|.. . ++++++||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~---~-~~~~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLF---E-PLAGQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchh---c-cCcCCCccEEEECCC
Confidence 6899999998864 33334668999999999998765432 234455542 1 2334589999997
Q ss_pred -----------chhhccC------------CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 165 -----------VSVQYLQ------------QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 165 -----------~~l~~~~------------~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.++.|-+ ....+++++.+.|+|||.+++++.+
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 1233332 2446899999999999999999764
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.5e-09 Score=88.45 Aligned_cols=94 Identities=14% Similarity=-0.016 Sum_probs=71.9
Q ss_pred CCCCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhCC--------------------CCCceEEeecccccCCC
Q 023470 96 RPGSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKNP--------------------RLEYFIVKDLNQDQKLE 152 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~~--------------------~~~~~~~~d~~~~~~l~ 152 (282)
.++.+||+.|||.|. .++. .+.+|+|+|+|+.+++.+. ....+.++|+ .+++
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~--~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~---f~l~ 116 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLS--KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADI---FNLP 116 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHh--CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccC---cCCC
Confidence 356899999999775 3343 6789999999999887631 1235677777 5664
Q ss_pred CC---CCceeEEEecchhhccC--CHHHHHHHHHHcccCCcEEEEEE
Q 023470 153 FD---HCSFDAVVCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 153 ~~---~~s~D~v~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
.. .+.||+|+-..++++++ ...+..+.+.++|+|||.+++.+
T Consensus 117 ~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 117 KIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred ccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 21 26799999999999996 34459999999999999987653
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.1e-09 Score=90.51 Aligned_cols=96 Identities=28% Similarity=0.319 Sum_probs=80.0
Q ss_pred hCCCCCeEEEeCCcccchhhhhcCCCeEEEEcCCHHHHHhCCCCC--ceEEeecccccCCCCCCCceeEEEecchhhccC
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPRLE--YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~~~~~~v~giD~s~~~l~~~~~~~--~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~ 171 (282)
..+.+..++|+|||.|.++... +.+-++|+|++...+..+++.. ...++|+ ..+|+.+.+||.+++..++||+.
T Consensus 42 ~~~~gsv~~d~gCGngky~~~~-p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~---l~~p~~~~s~d~~lsiavihhls 117 (293)
T KOG1331|consen 42 SQPTGSVGLDVGCGNGKYLGVN-PLCLIIGCDLCTGLLGGAKRSGGDNVCRADA---LKLPFREESFDAALSIAVIHHLS 117 (293)
T ss_pred ccCCcceeeecccCCcccCcCC-CcceeeecchhhhhccccccCCCceeehhhh---hcCCCCCCccccchhhhhhhhhh
Confidence 3445788999999999887664 6778999999999887776544 3667777 88999999999999999999996
Q ss_pred CH---HHHHHHHHHcccCCcEEEEE
Q 023470 172 QP---EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 172 ~~---~~~l~~~~r~LkpgG~li~~ 193 (282)
.. ..+++++.|+|+|||..++.
T Consensus 118 T~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 118 TRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hHHHHHHHHHHHHHHhcCCCceEEE
Confidence 43 44999999999999997765
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.8e-09 Score=86.68 Aligned_cols=146 Identities=15% Similarity=0.294 Sum_probs=88.0
Q ss_pred hCCCCCeEEEeCC--ccc-chhhhhcCCCeEEEEcCCHHHHHhCCCCCceE------Ee---------------------
Q 023470 94 MLRPGSEVLDLMS--SWV-SHLPQEVSYKRVVGHGLNAQELAKNPRLEYFI------VK--------------------- 143 (282)
Q Consensus 94 ~~~~~~~vLDiGc--G~~-~~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~------~~--------------------- 143 (282)
....+..+||||| |.. ..++..+....|.|+||.+..+..|++..++. +.
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 3335678999999 543 35566667788999999999887765432110 00
Q ss_pred -----ecccc-------------cCCCCCCCceeEEEecchhhcc--C----CHHHHHHHHHHcccCCcEEEEEEcCchh
Q 023470 144 -----DLNQD-------------QKLEFDHCSFDAVVCAVSVQYL--Q----QPEKVFAEVFRVLKPGGVFIVSFSNRMF 199 (282)
Q Consensus 144 -----d~~~~-------------~~l~~~~~s~D~v~~~~~l~~~--~----~~~~~l~~~~r~LkpgG~li~~~~~~~~ 199 (282)
+...+ +-+.+....||+|+|..+-.|+ . ....+|+.+++.|.|||+|+++-.....
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWks 214 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKS 214 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHH
Confidence 00000 1122345679999999765544 2 4456999999999999999999433444
Q ss_pred HHHHHHhhh-cCC----CCcchhhHHHHHHhh-CCCCchHHhhcCC
Q 023470 200 YEKAISAWR-DGT----AYGRVQLVVQYFQCV-EGYTNPEIVRKLP 239 (282)
Q Consensus 200 ~~~~~~~~~-~~~----~~~~~~~~~~~~~~~-~gF~~~ei~~~~~ 239 (282)
+.+....-. -.. ..-....+.+++.+. -||+..+......
T Consensus 215 Y~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~~~ 260 (288)
T KOG2899|consen 215 YKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLGLIV 260 (288)
T ss_pred HHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeeccccccc
Confidence 444332221 111 122234455666654 6887766555433
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.8e-09 Score=91.92 Aligned_cols=94 Identities=19% Similarity=0.196 Sum_probs=65.1
Q ss_pred CeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEecc-
Q 023470 99 SEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVCAV- 165 (282)
Q Consensus 99 ~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~~~- 165 (282)
.+|||+|||+|.. ++...+..+|+|+|+|+.+++.++.+ ..+..+|+. .. +++++||+|+++=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~--~~--l~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLF--AA--LPGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchh--hh--CCCCCccEEEECCC
Confidence 6899999998864 33334678999999999999765432 234455542 22 3356899999971
Q ss_pred -----h-------hhccCC------------HHHHHHHHHHcccCCcEEEEEEcC
Q 023470 166 -----S-------VQYLQQ------------PEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 166 -----~-------l~~~~~------------~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
. ++|-+. ...+++++.+.|||||.+++.+.+
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 1 112211 245789999999999999998764
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.5e-09 Score=93.36 Aligned_cols=109 Identities=13% Similarity=0.108 Sum_probs=70.6
Q ss_pred HHHHHHHHhhCCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCC
Q 023470 85 STLTNLYRQMLRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFD 154 (282)
Q Consensus 85 ~~~~~~~~~~~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~ 154 (282)
+.+.+.+...++++.+|||+|||+|... +...+..+|+|+|+|++|++.++.+ ..+..+|+.. ..++ .
T Consensus 239 E~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e-~~l~-~ 316 (423)
T PRK14966 239 EHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFD-TDMP-S 316 (423)
T ss_pred HHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhc-cccc-c
Confidence 3444444445556779999999988643 3334678999999999999765532 2355555521 1122 2
Q ss_pred CCceeEEEecc--h-------h----hcc--------CC----HHHHHHHHHHcccCCcEEEEEEc
Q 023470 155 HCSFDAVVCAV--S-------V----QYL--------QQ----PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 155 ~~s~D~v~~~~--~-------l----~~~--------~~----~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.++||+|+|+- . + .|- .| ...+++.+.+.|+|||.++++..
T Consensus 317 ~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 317 EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 35799999972 1 0 000 01 23467778899999999998864
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-08 Score=93.97 Aligned_cols=96 Identities=17% Similarity=0.226 Sum_probs=66.3
Q ss_pred CCCCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCC----CCCCcee
Q 023470 96 RPGSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLE----FDHCSFD 159 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~----~~~~s~D 159 (282)
.++.+|||+|||.|.. ++... ...+|+++|+++.+++.++.+ ..+...|. ..++ ...++||
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~---~~~~~~~~~~~~~fD 327 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADS---RNLLELKPQWRGYFD 327 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCCh---hhcccccccccccCC
Confidence 4678999999987753 34433 346999999999988654321 23344444 3333 3457899
Q ss_pred EEEec------chhhccCC----------------HHHHHHHHHHcccCCcEEEEEE
Q 023470 160 AVVCA------VSVQYLQQ----------------PEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 160 ~v~~~------~~l~~~~~----------------~~~~l~~~~r~LkpgG~li~~~ 194 (282)
.|++. .++++-++ ..+++.++.++|||||+++.++
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 99963 34444433 3468999999999999998775
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-08 Score=90.71 Aligned_cols=92 Identities=22% Similarity=0.207 Sum_probs=63.0
Q ss_pred CCCCCeEEEeCCcccchhh---hhcC-CCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHLP---QEVS-YKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~---~~~~-~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
++++.+|||+|||+|.... ...+ ...|+|+|+++++++.++. +..+..+|. .......++||+|+
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~---~~~~~~~~~fD~Ii 154 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDG---YYGVPEFAPYDVIF 154 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCh---hhcccccCCccEEE
Confidence 4577899999999886433 2222 3579999999999865542 123344443 33333346799999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+...+++++ ..+.+.|||||++++.+.
T Consensus 155 ~~~g~~~ip------~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 155 VTVGVDEVP------ETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred ECCchHHhH------HHHHHhcCCCCEEEEEeC
Confidence 987766553 457789999999988643
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-08 Score=89.14 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=67.6
Q ss_pred CCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCCC-------------CceEEeecccccCCCCCCCcee
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPRL-------------EYFIVKDLNQDQKLEFDHCSFD 159 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~~-------------~~~~~~d~~~~~~l~~~~~s~D 159 (282)
+...+||+||||.|....... +..+|+++|+++++++.+++. .++..+|.. .-+...+++||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~--~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGI--KFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchH--HHHhhCCCccc
Confidence 456789999999876544322 456999999999998766532 123444431 11222457899
Q ss_pred EEEecchhhccCC----HHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 160 AVVCAVSVQYLQQ----PEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 160 ~v~~~~~l~~~~~----~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+|++...-.+.+. ..++++.+.+.|+|||.+++...++
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~ 194 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSP 194 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 9999754333221 2568899999999999999865443
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.6e-09 Score=95.70 Aligned_cols=96 Identities=22% Similarity=0.250 Sum_probs=64.6
Q ss_pred CCCCeEEEeCCcccc---hhhhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEe
Q 023470 96 RPGSEVLDLMSSWVS---HLPQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~---~~~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.++.+|||+|||.|. .++... ...+|+|+|+|+.+++.++.+ ..+...|. ..++ ++++||+|++
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da---~~~~-~~~~fD~Vl~ 324 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDA---RSFS-PEEQPDAILL 324 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcc---cccc-cCCCCCEEEE
Confidence 467899999999885 334333 356999999999998655422 23344444 3443 4578999996
Q ss_pred c------chhh---------------ccC-CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 164 A------VSVQ---------------YLQ-QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 164 ~------~~l~---------------~~~-~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
- .++. ++. ....+|.++.++|||||++++++.
T Consensus 325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 2 1111 111 123489999999999999999864
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-08 Score=89.01 Aligned_cols=111 Identities=15% Similarity=0.121 Sum_probs=70.8
Q ss_pred HHHHHHHHhhCCCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCCC---------------CceEEeecc
Q 023470 85 STLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPRL---------------EYFIVKDLN 146 (282)
Q Consensus 85 ~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~~---------------~~~~~~d~~ 146 (282)
+.+........+...+||+||||.|..+.... +..+|+++|++++|++.|+.. ..+.++|..
T Consensus 138 E~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~ 217 (374)
T PRK01581 138 EALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAK 217 (374)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHH
Confidence 33434333334556799999999886544433 347999999999999877641 123344432
Q ss_pred cccCCCCCCCceeEEEecchhh---ccC--CHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 147 QDQKLEFDHCSFDAVVCAVSVQ---YLQ--QPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 147 ~~~~l~~~~~s~D~v~~~~~l~---~~~--~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.-+.-..++||+|++...-. ... --.++++.+++.|+|||.+++....+
T Consensus 218 --~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp 271 (374)
T PRK01581 218 --EFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP 271 (374)
T ss_pred --HHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence 11233356899999984210 011 11458999999999999998774433
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-08 Score=94.67 Aligned_cols=99 Identities=14% Similarity=0.214 Sum_probs=66.5
Q ss_pred CCCCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhCCCCC-----ceEE--eecccccCCCC--CCCceeEEEe
Q 023470 96 RPGSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKNPRLE-----YFIV--KDLNQDQKLEF--DHCSFDAVVC 163 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~-----~~~~--~d~~~~~~l~~--~~~s~D~v~~ 163 (282)
.++.+|||+|||.|. .++...+..+|+|+|+++++++.++.+. ...+ .+... ...+. ++++||.|++
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~-~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG-RGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc-ccccccccccccCEEEE
Confidence 467899999998774 3444445679999999999886543221 1111 22211 22222 4678999995
Q ss_pred c------chhhccCC----------------HHHHHHHHHHcccCCcEEEEEEc
Q 023470 164 A------VSVQYLQQ----------------PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 164 ~------~~l~~~~~----------------~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
. .++++.++ ..++|.+++++|||||.++.++.
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 2 34555544 24699999999999999998854
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.2e-08 Score=80.69 Aligned_cols=108 Identities=19% Similarity=0.267 Sum_probs=77.4
Q ss_pred HHHHHHHHhhCCCCCe-EEEeCCcccc---hhhhhcCCCeEEEEcCCHHHH---H----hCC--CCCceEEeecccccCC
Q 023470 85 STLTNLYRQMLRPGSE-VLDLMSSWVS---HLPQEVSYKRVVGHGLNAQEL---A----KNP--RLEYFIVKDLNQDQKL 151 (282)
Q Consensus 85 ~~~~~~~~~~~~~~~~-vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l---~----~~~--~~~~~~~~d~~~~~~l 151 (282)
+.+.+.+.+.+++... |||||||+|. ++++.++.....-.|+++..+ . .+. ....-...|+.. ...
T Consensus 12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~-~~w 90 (204)
T PF06080_consen 12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA-PPW 90 (204)
T ss_pred hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC-CCC
Confidence 3466677777777776 9999999986 456677888999999988653 1 111 122234555543 223
Q ss_pred CC------CCCceeEEEecchhhccC--CHHHHHHHHHHcccCCcEEEEE
Q 023470 152 EF------DHCSFDAVVCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 152 ~~------~~~s~D~v~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+. ..++||+|+|.+++|-++ ..+.+|+.+.++|+|||.|++-
T Consensus 91 ~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 91 PWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred ccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 32 356899999999998776 3455999999999999999876
|
The function of this family is unknown. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.3e-09 Score=81.94 Aligned_cols=94 Identities=20% Similarity=0.287 Sum_probs=67.7
Q ss_pred CeEEEeCCcccchhhhhc--C-CCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEecch
Q 023470 99 SEVLDLMSSWVSHLPQEV--S-YKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 99 ~~vLDiGcG~~~~~~~~~--~-~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
.+|||+|||.|..+.... . ....+|+|.|+++++.|+.. ..|.+.|+. .-.+..+.||+|+--.+
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~---~~~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDIT---DPDFLSGQFDLVLDKGT 145 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeecc---CCcccccceeEEeecCc
Confidence 389999999987765543 2 23599999999988655422 367788884 33555677888887766
Q ss_pred hhccC--------CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 167 VQYLQ--------QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 167 l~~~~--------~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+..+. .+...+..+.+.|+|||+++|+-.
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 55542 223478889999999999998844
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-08 Score=84.57 Aligned_cols=94 Identities=20% Similarity=0.285 Sum_probs=58.1
Q ss_pred CCCeEEEeCCcccc------hhhhh-----cC-CCeEEEEcCCHHHHHhCCCC---------------------------
Q 023470 97 PGSEVLDLMSSWVS------HLPQE-----VS-YKRVVGHGLNAQELAKNPRL--------------------------- 137 (282)
Q Consensus 97 ~~~~vLDiGcG~~~------~~~~~-----~~-~~~v~giD~s~~~l~~~~~~--------------------------- 137 (282)
+..+|+-+||++|. .+... .+ ..+|+|+|+|+.++++|+..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45789999997653 11111 11 46999999999999776411
Q ss_pred ---------CceEEeecccccCCCCCCCceeEEEecchhhccCCH--HHHHHHHHHcccCCcEEEEE
Q 023470 138 ---------EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP--EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 138 ---------~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~--~~~l~~~~r~LkpgG~li~~ 193 (282)
..|...++ .+.+...+.||+|+|-+||-++... ..+++.+++.|+|||+|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL---~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNL---LDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--T---T-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEeccc---CCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 13344444 2323345789999999999999644 45999999999999999986
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-08 Score=85.80 Aligned_cols=98 Identities=21% Similarity=0.293 Sum_probs=67.9
Q ss_pred CCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEec
Q 023470 97 PGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
...+|||+|||.|.. ++...+..+|+|+|+.++|.+.|+++ ..+...|+.. ..-...-.+||+|+|+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~-~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKE-FLKALVFASFDLIICN 122 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHH-hhhcccccccCEEEeC
Confidence 478899999997752 33333558999999999988766532 3455666632 1112333579999999
Q ss_pred ---c---hh----------hcc--CCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 165 ---V---SV----------QYL--QQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ---~---~l----------~~~--~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+ .- +|. -+.++.++.+.++|||||.+.+..+
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 1 11 122 2667899999999999999998865
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.1e-08 Score=85.81 Aligned_cols=99 Identities=15% Similarity=0.109 Sum_probs=66.6
Q ss_pred CCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEe
Q 023470 96 RPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
++..+|||||||.|.. +....+..+|+++|+++++++.+++. ..+.++|.. .-+.-..++||+|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~--~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGA--EYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHH--HHHHhCCCCCCEEEE
Confidence 4567899999997764 33445788999999999999765432 133445542 112222367999998
Q ss_pred cchh-hccC---CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 164 AVSV-QYLQ---QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 164 ~~~l-~~~~---~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
...- ...+ ...++++++.++|+|||.+++.+.+
T Consensus 143 D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 143 DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 5311 1111 1267999999999999999987543
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.1e-08 Score=91.80 Aligned_cols=98 Identities=21% Similarity=0.380 Sum_probs=65.6
Q ss_pred CCCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCC--CCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLE--FDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~--~~~~s~D~v~ 162 (282)
..++.+|||+|||.|.. ++...+..+|+|+|+|+.+++.++.+ ..+..+|. ..++ +.+++||.|+
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~---~~~~~~~~~~~fD~Vl 318 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDA---RDPAQWWDGQPFDRIL 318 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCc---ccchhhcccCCCCEEE
Confidence 34788999999998753 33333447999999999998655422 23445555 3332 3457899999
Q ss_pred ec----c--hhh------ccCC----------HHHHHHHHHHcccCCcEEEEEEc
Q 023470 163 CA----V--SVQ------YLQQ----------PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~----~--~l~------~~~~----------~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+. . ++. |... ...+++++.++|||||++++++.
T Consensus 319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 43 1 121 1111 13589999999999999998864
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.4e-08 Score=77.14 Aligned_cols=96 Identities=21% Similarity=0.201 Sum_probs=68.9
Q ss_pred hCCCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC------C--ceEEeecccccCCCCCCCceeEEE
Q 023470 94 MLRPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL------E--YFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~------~--~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
.+.++.+++|||||+|.. ++...+.++|+++|-++++++..+.+ . ....++.. +.|+-. .++|.|+
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap--~~L~~~-~~~daiF 107 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAP--EALPDL-PSPDAIF 107 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccch--HhhcCC-CCCCEEE
Confidence 355789999999998864 23334889999999999887543321 2 23333332 334322 2799999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.... .+.+.+++.+...|||||++++....
T Consensus 108 IGGg----~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 108 IGGG----GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred ECCC----CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 9887 35689999999999999999988653
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.3e-08 Score=86.18 Aligned_cols=96 Identities=22% Similarity=0.272 Sum_probs=64.9
Q ss_pred CCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++.+|||+|||.|.. ++...+..+++|+|+|+.+++.++.+ ..+...|+. . ++++++||+|+++
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~---~-~~~~~~fD~Iv~n 182 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWF---E-PLPGGRFDLIVSN 182 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEcccc---C-cCCCCceeEEEEC
Confidence 3567899999998764 33334678999999999988655432 234444441 1 2235789999996
Q ss_pred ch------hh--------cc------------CCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 165 VS------VQ--------YL------------QQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ~~------l~--------~~------------~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
-- ++ |- .....+++++.++|||||.+++.+.
T Consensus 183 pPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 183 PPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred CCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 21 11 11 1234588899999999999999763
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.1e-08 Score=82.42 Aligned_cols=97 Identities=16% Similarity=0.114 Sum_probs=64.9
Q ss_pred CCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC-----CceEEeecccccCCC-CCCCceeEEEecc--h
Q 023470 98 GSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL-----EYFIVKDLNQDQKLE-FDHCSFDAVVCAV--S 166 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~-----~~~~~~d~~~~~~l~-~~~~s~D~v~~~~--~ 166 (282)
..+|||+|||+|... +...++.+|+|+|+|+.+++.++.+ ..+..+|+.. .++ ...++||+|+++- .
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~--~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYD--ALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechh--hcchhcCCCEeEEEECCCCC
Confidence 458999999987543 3334667999999999998765532 2456666531 122 1135799999982 1
Q ss_pred ----hhccC----------------C----HHHHHHHHHHcccCCcEEEEEEcC
Q 023470 167 ----VQYLQ----------------Q----PEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 167 ----l~~~~----------------~----~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+..++ | ...+++.+.++|||||.+++....
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 11110 1 236788888999999999998653
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.9e-08 Score=82.04 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=63.2
Q ss_pred CCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEEecchh
Q 023470 98 GSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
..+.||.|||.|+...... -..+|.-+|+++..++.++. ..++....+ +++..+.++||+|.+-+++
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gL---Q~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGL---QDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-G---GG----TT-EEEEEEES-G
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCH---hhccCCCCcEeEEEehHhh
Confidence 4679999999987554332 46799999999998876651 123444444 5554445799999999999
Q ss_pred hccCCH--HHHHHHHHHcccCCcEEEEE
Q 023470 168 QYLQQP--EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 168 ~~~~~~--~~~l~~~~r~LkpgG~li~~ 193 (282)
.|++|. .++|+.+...|+|+|.+++-
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 999854 46999999999999999985
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-07 Score=81.98 Aligned_cols=93 Identities=19% Similarity=0.268 Sum_probs=67.0
Q ss_pred CCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhCCCCC------c--eEEeecccccCCCCCCCceeEEEecch
Q 023470 98 GSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKNPRLE------Y--FIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 98 ~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~------~--~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
+.+|||+|||+|. .++...+..+++-+|+|..+++.++.+. . +...+. -.+..+ +||+|+|+==
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~----~~~v~~-kfd~IisNPP 233 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNL----YEPVEG-KFDLIISNPP 233 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecc----cccccc-cccEEEeCCC
Confidence 4589999999764 5566668899999999999998776432 1 223332 233434 8999999954
Q ss_pred hhccCCH-----HHHHHHHHHcccCCcEEEEEEc
Q 023470 167 VQYLQQP-----EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 167 l~~~~~~-----~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+|--.+. ++++.++.+.|++||.|.+..-
T Consensus 234 fh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 234 FHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 4433211 3699999999999999998854
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.6e-08 Score=83.15 Aligned_cols=92 Identities=22% Similarity=0.348 Sum_probs=61.3
Q ss_pred CCCCCeEEEeCCcccchhhh---hc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHLPQ---EV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~---~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
++++.+|||||||+|...+- .. +...|+++|+.+..++.++.+ ..+..+|.. ..++ ....||.|+
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~--~g~~-~~apfD~I~ 146 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGS--EGWP-EEAPFDRII 146 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GG--GTTG-GG-SEEEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchh--hccc-cCCCcCEEE
Confidence 67899999999998764332 22 455899999999887665432 245566642 2333 346799999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+..+...++ ..+.+.||+||++++-+.
T Consensus 147 v~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 147 VTAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp ESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred EeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 998876554 457888999999998765
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-07 Score=80.26 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=60.9
Q ss_pred CCCeEEEeCCcccchhhhh---c---CCCeEEEEcCCHHHHHhCCCC---CceEEeecccccCCCCCCCceeEEEec--c
Q 023470 97 PGSEVLDLMSSWVSHLPQE---V---SYKRVVGHGLNAQELAKNPRL---EYFIVKDLNQDQKLEFDHCSFDAVVCA--V 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~---~---~~~~v~giD~s~~~l~~~~~~---~~~~~~d~~~~~~l~~~~~s~D~v~~~--~ 165 (282)
.+.+|||+|||+|...... . +..+|+|+|+++.+++.++.+ ..+...|+ ...++ +++||+|+++ +
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~---~~~~~-~~~FDlIIsNPPY 124 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADA---LTTEF-DTLFDMAISNPPF 124 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcch---hcccc-cCCccEEEECCCC
Confidence 4679999999987654321 1 356999999999999887754 35666666 34443 4689999999 2
Q ss_pred hhhccC----------CHHHHHHHHHHcccCCcE
Q 023470 166 SVQYLQ----------QPEKVFAEVFRVLKPGGV 189 (282)
Q Consensus 166 ~l~~~~----------~~~~~l~~~~r~LkpgG~ 189 (282)
.-.... -...+++.+.+++++|+.
T Consensus 125 ~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 125 GKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 211111 134588899997777764
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.2e-08 Score=81.88 Aligned_cols=106 Identities=17% Similarity=0.185 Sum_probs=67.1
Q ss_pred eEEEeCCcccchhhh---hcCCCeEEEEcCCHHHHHhCC--------CCCceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 100 EVLDLMSSWVSHLPQ---EVSYKRVVGHGLNAQELAKNP--------RLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 100 ~vLDiGcG~~~~~~~---~~~~~~v~giD~s~~~l~~~~--------~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
.+||||||.|.++.. ..+...++|+|++...++++. .+..+..+|.......-++++++|.|..+|-=-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 789999999876544 448999999999987664332 233444445421111124578999999976432
Q ss_pred ccC--------CHHHHHHHHHHcccCCcEEEEEEcCchhHHHHHH
Q 023470 169 YLQ--------QPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAIS 205 (282)
Q Consensus 169 ~~~--------~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~ 205 (282)
|.. --..++..++++|||||.+.+.+.+..+......
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~ 144 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLE 144 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHH
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Confidence 221 1145999999999999999999877666554433
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.3e-08 Score=91.57 Aligned_cols=99 Identities=14% Similarity=0.321 Sum_probs=66.7
Q ss_pred CCCCCeEEEeCCcccc---hhhhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCC-CCCCceeEE
Q 023470 95 LRPGSEVLDLMSSWVS---HLPQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLE-FDHCSFDAV 161 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~---~~~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~-~~~~s~D~v 161 (282)
..++.+|||+|||.|. +++... +..+|+++|+|+.+++.++.+ ..+...|. ..++ +.+++||.|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da---~~l~~~~~~~fD~V 311 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADA---ERLTEYVQDTFDRI 311 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch---hhhhhhhhccCCEE
Confidence 4577899999999875 344443 467999999999998655422 13444444 3443 335789999
Q ss_pred Eec------chhhccCC----------------HHHHHHHHHHcccCCcEEEEEEcC
Q 023470 162 VCA------VSVQYLQQ----------------PEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 162 ~~~------~~l~~~~~----------------~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++. .++..-++ ..++|.++.+.|||||.++.++..
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 963 22222111 144799999999999999988643
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.7e-08 Score=89.43 Aligned_cols=103 Identities=36% Similarity=0.462 Sum_probs=82.9
Q ss_pred HHHHHhhCCCCCeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHHHhCC---------CCCceEEeecccccCCCCCCC
Q 023470 88 TNLYRQMLRPGSEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQELAKNP---------RLEYFIVKDLNQDQKLEFDHC 156 (282)
Q Consensus 88 ~~~~~~~~~~~~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l~~~~---------~~~~~~~~d~~~~~~l~~~~~ 156 (282)
...++..+.++..++|+|||.+. .+-..+..+.++|+|.++..+.++. ....+.+.++ ...|++++
T Consensus 101 ~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~---~~~~fedn 177 (364)
T KOG1269|consen 101 IVALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADF---GKMPFEDN 177 (364)
T ss_pred hHHHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhh---hcCCCCcc
Confidence 34455666788899999998654 3444457889999999987665433 2235566677 77899999
Q ss_pred ceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 157 SFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 157 s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.||.+-+..+.+|.++...+++|++|++||||.++..
T Consensus 178 ~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 178 TFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred ccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 9999999999999999999999999999999999875
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.3e-08 Score=81.11 Aligned_cols=95 Identities=22% Similarity=0.223 Sum_probs=67.1
Q ss_pred CCCCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhC---CCC-----------------CceEEeecccccCCCC
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKN---PRL-----------------EYFIVKDLNQDQKLEF 153 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~---~~~-----------------~~~~~~d~~~~~~l~~ 153 (282)
.+++.+||..|||.|.-+.-. ..+.+|+|+|+|+.+++.+ ... ..+.++|+ .+++.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDf---F~l~~ 111 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDF---FELPP 111 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-T---TTGGG
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccc---ccCCh
Confidence 456779999999977533221 1678999999999998764 111 13445666 55543
Q ss_pred CC-CceeEEEecchhhccC--CHHHHHHHHHHcccCCcEEEE
Q 023470 154 DH-CSFDAVVCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 154 ~~-~s~D~v~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~ 192 (282)
.. ++||+|+=..+++.++ ...+..+.+.++|||||.+++
T Consensus 112 ~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 32 4799999999999886 556699999999999999443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-08 Score=92.94 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHhhCCCC--CeEEEeCCcccchhhhhc-CCCeEEEE---cCCHHHHHhC--CCCCceEEeecccccCCCC
Q 023470 82 GFISTLTNLYRQMLRPG--SEVLDLMSSWVSHLPQEV-SYKRVVGH---GLNAQELAKN--PRLEYFIVKDLNQDQKLEF 153 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~--~~vLDiGcG~~~~~~~~~-~~~~v~gi---D~s~~~l~~~--~~~~~~~~~d~~~~~~l~~ 153 (282)
.+++.+.+.+......+ ..+||+|||.|.+.+... .+..+..+ |..+.+++.+ ++... .++-+.. ..||+
T Consensus 100 ~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa-~~~~~~s-~rLPf 177 (506)
T PF03141_consen 100 HYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPA-MIGVLGS-QRLPF 177 (506)
T ss_pred HHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcch-hhhhhcc-ccccC
Confidence 45555555554322222 247999999877665544 23233232 2233344333 33322 2222211 78999
Q ss_pred CCCceeEEEecchhh-ccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 154 DHCSFDAVVCAVSVQ-YLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 154 ~~~s~D~v~~~~~l~-~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
++++||+|.|+.++. +..+....|-|+.|+|+|||+++++-|
T Consensus 178 p~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 178 PSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred CccchhhhhcccccccchhcccceeehhhhhhccCceEEecCC
Confidence 999999999998764 444445689999999999999999854
|
; GO: 0008168 methyltransferase activity |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-07 Score=83.15 Aligned_cols=93 Identities=19% Similarity=0.310 Sum_probs=64.6
Q ss_pred CCeEEEeCCcccc------h-hhhhc----CCCeEEEEcCCHHHHHhCCCCC----------------------------
Q 023470 98 GSEVLDLMSSWVS------H-LPQEV----SYKRVVGHGLNAQELAKNPRLE---------------------------- 138 (282)
Q Consensus 98 ~~~vLDiGcG~~~------~-~~~~~----~~~~v~giD~s~~~l~~~~~~~---------------------------- 138 (282)
..+|+..||++|. . +.... ...+|+|+|+|..+|++|+...
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999996653 1 11111 2468999999999997764221
Q ss_pred -----------ceEEeecccccCCCCC-CCceeEEEecchhhccCC--HHHHHHHHHHcccCCcEEEEE
Q 023470 139 -----------YFIVKDLNQDQKLEFD-HCSFDAVVCAVSVQYLQQ--PEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 139 -----------~~~~~d~~~~~~l~~~-~~s~D~v~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~ 193 (282)
.|...++ .+.+++ .+.||+|+|.+++.|+.. ...+++++++.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL---~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNL---LAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccC---CCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 1222222 121222 478999999999999954 556999999999999998876
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.8e-08 Score=92.20 Aligned_cols=94 Identities=15% Similarity=0.171 Sum_probs=63.2
Q ss_pred CCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEecc
Q 023470 98 GSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
..+|||+|||+|... +...+..+|+|+|+|+.+++.++.+ ..+..+|+. . .+++++||+|+|+-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~--~--~~~~~~fDlIvsNP 214 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWF--E--NIEKQKFDFIVSNP 214 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchh--h--hCcCCCccEEEECC
Confidence 468999999988643 3334778999999999998766532 123344431 1 23356899999961
Q ss_pred --------------hhhccC------------CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 166 --------------SVQYLQ------------QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 166 --------------~l~~~~------------~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
++.|-+ ....+++++.++|+|||.+++++.
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 111211 113367888999999999999864
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.67 E-value=9e-08 Score=83.41 Aligned_cols=99 Identities=11% Similarity=0.115 Sum_probs=64.5
Q ss_pred CCCeEEEeCCcccchhhhh---cCCCeEEEEcCCHHHHHhCCCCC------------ceEEeecccccCCCCCCCceeEE
Q 023470 97 PGSEVLDLMSSWVSHLPQE---VSYKRVVGHGLNAQELAKNPRLE------------YFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~---~~~~~v~giD~s~~~l~~~~~~~------------~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
.+.+||+||||.|...... .+..+++++|+++++++.+++.. .+...|.. .-+...+++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~--~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGF--KFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchH--HHHHhCCCCccEE
Confidence 4569999999987644332 23578999999999987655321 12222221 1111124689999
Q ss_pred EecchhhccC--C--HHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 162 VCAVSVQYLQ--Q--PEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 162 ~~~~~l~~~~--~--~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
++.......+ + ..++++.+.+.|+|||.+++...++
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~ 189 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESP 189 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence 9875422221 1 3578999999999999999875544
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.2e-08 Score=90.71 Aligned_cols=101 Identities=15% Similarity=0.051 Sum_probs=68.0
Q ss_pred CCCCCeEEEeCCcccchhhhh--cCC-CeEEEEcCCHHHHHhCCCCC---------------ceEEeecccccCCCCCCC
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE--VSY-KRVVGHGLNAQELAKNPRLE---------------YFIVKDLNQDQKLEFDHC 156 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~--~~~-~~v~giD~s~~~l~~~~~~~---------------~~~~~d~~~~~~l~~~~~ 156 (282)
.++..+|||||||.|...... .+. .+|+++|+++++++.++++. ++...|.. .-+...++
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~--~~l~~~~~ 372 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAF--NWLRKLAE 372 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHH--HHHHhCCC
Confidence 345678999999987644332 233 79999999999998776521 22333431 11222346
Q ss_pred ceeEEEecchhhccCCH-----HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 157 SFDAVVCAVSVQYLQQP-----EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 157 s~D~v~~~~~l~~~~~~-----~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+||+|++...-...+.. +++++.+.+.|||||.+++...++
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~ 418 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP 418 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc
Confidence 89999998653332221 358899999999999999875443
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-07 Score=79.67 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhh-CCCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCCC-------ceEEe--ecccc
Q 023470 82 GFISTLTNLYRQM-LRPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRLE-------YFIVK--DLNQD 148 (282)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~-------~~~~~--d~~~~ 148 (282)
.+...+.+.+.+. ..++..|||+|||.|.. ++...+.+.|+|+|.|+.++..+.++. .+.+. ++..+
T Consensus 132 E~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d 211 (328)
T KOG2904|consen 132 EWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESD 211 (328)
T ss_pred HHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccc
Confidence 4555555555432 22456799999998864 344457899999999999886554332 12222 22222
Q ss_pred --cCCCCCCCceeEEEec--chhh------------c------------cCCHHHHHHHHHHcccCCcEEEEEEcCchhH
Q 023470 149 --QKLEFDHCSFDAVVCA--VSVQ------------Y------------LQQPEKVFAEVFRVLKPGGVFIVSFSNRMFY 200 (282)
Q Consensus 149 --~~l~~~~~s~D~v~~~--~~l~------------~------------~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~ 200 (282)
...+..++.+|+++|+ ++.+ | ......++.-+.|.|+|||.+.+++..+.--
T Consensus 212 ~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~ 291 (328)
T KOG2904|consen 212 ASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEH 291 (328)
T ss_pred cccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccC
Confidence 3344567899999999 2110 0 0111235777899999999999997633222
Q ss_pred HHHHHhhhc
Q 023470 201 EKAISAWRD 209 (282)
Q Consensus 201 ~~~~~~~~~ 209 (282)
......|..
T Consensus 292 ~~lv~~~m~ 300 (328)
T KOG2904|consen 292 SYLVRIWMI 300 (328)
T ss_pred cHHHHHHHH
Confidence 233444543
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-07 Score=78.22 Aligned_cols=89 Identities=13% Similarity=0.279 Sum_probs=68.2
Q ss_pred CCeEEEeCCc-ccchhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCC---CCCceeEEEecchhhccCCH
Q 023470 98 GSEVLDLMSS-WVSHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEF---DHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 98 ~~~vLDiGcG-~~~~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~---~~~s~D~v~~~~~l~~~~~~ 173 (282)
..++|||||= +..... ..+...|+.||+++ ........|+ .+.|+ ++++||+|+++.||++++++
T Consensus 52 ~lrlLEVGals~~N~~s-~~~~fdvt~IDLns-------~~~~I~qqDF---m~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS-TSGWFDVTRIDLNS-------QHPGILQQDF---MERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc-ccCceeeEEeecCC-------CCCCceeecc---ccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 3689999993 222222 23456799999987 2334567777 45544 46789999999999999988
Q ss_pred HH---HHHHHHHcccCCcE-----EEEEEcCc
Q 023470 174 EK---VFAEVFRVLKPGGV-----FIVSFSNR 197 (282)
Q Consensus 174 ~~---~l~~~~r~LkpgG~-----li~~~~~~ 197 (282)
.. +++.+++.|+|+|. |++..|.+
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP 152 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence 76 99999999999999 99988865
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.4e-08 Score=83.65 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=63.9
Q ss_pred CCCCCeEEEeCCcccchh---hhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
..++.+|||+|||.|... +... ....|+++|+++.+++.++.+ ..+...|. ..++...++||+|+
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~---~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG---RVFGAAVPKFDAIL 145 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH---HHhhhhccCCCEEE
Confidence 357889999999877533 3333 346999999999988654322 12333333 33443446799999
Q ss_pred ec------chhhccC----------------CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 163 CA------VSVQYLQ----------------QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~------~~l~~~~----------------~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+. .++.+-+ ...++|+++.+.|||||+++.++.
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 63 1222111 113489999999999999998754
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-07 Score=76.29 Aligned_cols=134 Identities=17% Similarity=0.239 Sum_probs=78.5
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
.++.+|||+|||+|....... .+.+++|+|+++.+++.+++ +..+..+|+ ..+++++.+||.|+++.-.+
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~---~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDA---LKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECch---hcCCccccCCCEEEECCCcc
Confidence 456789999999886544332 36799999999998865442 234556666 66666666799999975433
Q ss_pred ccCCHHHHHHHHHHc--ccCCcEEEEEEcCchhHHHHHHhhhcCCCCcchhhHHHHHHhhCCCCchHHhhcCCCCcccc
Q 023470 169 YLQQPEKVFAEVFRV--LKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPADSAAA 245 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~--LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~ei~~~~~~~g~~~ 245 (282)
+. ...+..+... +.++|.+++... . .+..........|..+..+..+ |...++...++...|.+
T Consensus 89 -~~--~~~i~~~l~~~~~~~~~~l~~q~e---~-a~rl~~~~~~~~y~~lsv~~~~------~~~~~~~~~v~~~~F~P 154 (169)
T smart00650 89 -IS--TPILFKLLEEPPAFRDAVLMVQKE---V-ARRLAAKPGSKDYGRLSVLLQP------YFDVKILFKVPPEAFRP 154 (169)
T ss_pred -cH--HHHHHHHHhcCCCcceEEEEEEHH---H-hHHhcCCCCCCcccHHHHHHHH------HeeEEEEEEEChhhCCC
Confidence 21 3344444432 447777777632 1 1122223333455544443332 44455555555544543
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.8e-07 Score=77.72 Aligned_cols=134 Identities=22% Similarity=0.200 Sum_probs=90.2
Q ss_pred hhCCCCCeEEEeCCcccchhhhh---c-CCCeEEEEcCCHHHHHhCCCCC---------ceEEeecccccCCCCCCCcee
Q 023470 93 QMLRPGSEVLDLMSSWVSHLPQE---V-SYKRVVGHGLNAQELAKNPRLE---------YFIVKDLNQDQKLEFDHCSFD 159 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG~~~~~~~~---~-~~~~v~giD~s~~~l~~~~~~~---------~~~~~d~~~~~~l~~~~~s~D 159 (282)
..+.++.+|||.|.|.|...+.. . +..+|+..|+-++..+.|+++. .....|+ .+..++ +.||
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv---~~~~~~-~~vD 165 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDV---REGIDE-EDVD 165 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccc---cccccc-cccC
Confidence 35679999999999987643332 2 6689999999998887765432 2334444 333333 3899
Q ss_pred EEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHHHHHHhhhcCCCCcchhhHHHHHHhhCCCCchHHhhcCC
Q 023470 160 AVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLP 239 (282)
Q Consensus 160 ~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~ei~~~~~ 239 (282)
+|+. -+++|..++..++.+|||||.+++-.|.-.-..+... -+.. .||..+|..+.+.
T Consensus 166 av~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~----------------~l~~-~g~~~ie~~E~l~ 223 (256)
T COG2519 166 AVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVE----------------ALRE-RGFVDIEAVETLV 223 (256)
T ss_pred EEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH----------------HHHh-cCccchhhheeee
Confidence 9988 6789999999999999999999988775322222111 1222 4888888777776
Q ss_pred CCccccccccCch
Q 023470 240 ADSAAAQEDKSPI 252 (282)
Q Consensus 240 ~~g~~~~~~~~~~ 252 (282)
+..-......+|.
T Consensus 224 R~~~v~~~~~RP~ 236 (256)
T COG2519 224 RRWEVRKEATRPE 236 (256)
T ss_pred heeeecccccCcc
Confidence 6433344444443
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.5e-07 Score=81.26 Aligned_cols=118 Identities=18% Similarity=0.236 Sum_probs=79.8
Q ss_pred CCCCCeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHH-----HHhCCCCC---ceEEeecccccCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQE-----LAKNPRLE---YFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~-----l~~~~~~~---~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
+-++..|||+|||+|- .++.+.+..+|+|+|.|.-+ +....+.. .++.+.+ +++.+|.+++|+|+|-
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkv---Edi~LP~eKVDiIvSE 134 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKV---EDIELPVEKVDIIVSE 134 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecce---EEEecCccceeEEeeh
Confidence 4468899999998774 45566688999999999743 22222222 3445555 5555557899999998
Q ss_pred c---hhhccCCHHHHHHHHHHcccCCcEEEE--------EEcCchhHHHHHHhhhcCCCCcc
Q 023470 165 V---SVQYLQQPEKVFAEVFRVLKPGGVFIV--------SFSNRMFYEKAISAWRDGTAYGR 215 (282)
Q Consensus 165 ~---~l~~~~~~~~~l~~~~r~LkpgG~li~--------~~~~~~~~~~~~~~~~~~~~~~~ 215 (282)
+ +|-+-...+.++-.--+.|+|||.++= .+.++.........|.+..++..
T Consensus 135 WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d~~~~~~~i~fW~~Vygfdm 196 (346)
T KOG1499|consen 135 WMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIEDDSYKDDKIGFWDDVYGFDM 196 (346)
T ss_pred hhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEeccCchhhhhhcCccccccccch
Confidence 4 344445677788888899999999842 23444555555667877666543
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-07 Score=87.51 Aligned_cols=95 Identities=19% Similarity=0.267 Sum_probs=63.5
Q ss_pred CCCCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCC--CCCCceeEE
Q 023470 96 RPGSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLE--FDHCSFDAV 161 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~--~~~~s~D~v 161 (282)
.++.+|||+|||.|.. ++... +..+|+|+|+++.+++.++++ ..+...|. ..+. ++ ++||+|
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~---~~~~~~~~-~~fD~V 324 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDA---RKVHEKFA-EKFDKI 324 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCc---ccccchhc-ccCCEE
Confidence 4678999999998753 33333 467999999999988654321 23445554 3332 33 689999
Q ss_pred Eecc------hhhccCC----------------HHHHHHHHHHcccCCcEEEEEE
Q 023470 162 VCAV------SVQYLQQ----------------PEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 162 ~~~~------~l~~~~~----------------~~~~l~~~~r~LkpgG~li~~~ 194 (282)
++.- ++.+-++ ...+++++.++|||||.++.++
T Consensus 325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 9751 1221111 1347999999999999999764
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.9e-07 Score=78.03 Aligned_cols=94 Identities=17% Similarity=0.247 Sum_probs=65.3
Q ss_pred CCCeEEEeCCcccc-------hhhhhc-----CCCeEEEEcCCHHHHHhCCCCC--------------------------
Q 023470 97 PGSEVLDLMSSWVS-------HLPQEV-----SYKRVVGHGLNAQELAKNPRLE-------------------------- 138 (282)
Q Consensus 97 ~~~~vLDiGcG~~~-------~~~~~~-----~~~~v~giD~s~~~l~~~~~~~-------------------------- 138 (282)
...+|+-+||++|. .+.... ...+|+|+|+|..+|++|+...
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36789999997653 112222 2579999999999997765211
Q ss_pred -----------ceEEeecccccCCCCCCCceeEEEecchhhccCCH--HHHHHHHHHcccCCcEEEEE
Q 023470 139 -----------YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP--EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 139 -----------~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~--~~~l~~~~r~LkpgG~li~~ 193 (282)
.|...++. .+.+ ..+.||+|+|-+||-++..+ .++++.++..|+|||.|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl--~~~~-~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLL--DDSP-FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCC--CCcc-ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 11222221 1111 34669999999999999644 44999999999999999985
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.9e-07 Score=77.99 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=66.3
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhC--CCCCceEEeecccccCCCCCCCceeEEEecchhhcc
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKN--PRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~--~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~ 170 (282)
.+..+|+|||+|.|... ....|+.+++..|. +..++.+ .....+..+|+ . -+++. +|+++..++||+.
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~~~rv~~~~gd~---f-~~~P~--~D~~~l~~vLh~~ 171 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKEADRVEFVPGDF---F-DPLPV--ADVYLLRHVLHDW 171 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHHTTTEEEEES-T---T-TCCSS--ESEEEEESSGGGS
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-HhhhhccccccccccccccH---H-hhhcc--ccceeeehhhhhc
Confidence 34568999999987654 44458999999999 6666433 34456777777 3 34444 9999999999999
Q ss_pred CCHH--HHHHHHHHcccCC--cEEEEE
Q 023470 171 QQPE--KVFAEVFRVLKPG--GVFIVS 193 (282)
Q Consensus 171 ~~~~--~~l~~~~r~Lkpg--G~li~~ 193 (282)
++.+ .+|+++++.|+|| |+|+|.
T Consensus 172 ~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 172 SDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp -HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 7654 4999999999999 998875
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.3e-07 Score=75.57 Aligned_cols=92 Identities=17% Similarity=0.249 Sum_probs=66.2
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
+.++.+|||||||+|...+-.. -..+|+.+|..++..+.|+++ ..+.++|.. ..++ +...||.|+...
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~--~G~~-~~aPyD~I~Vta 146 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGS--KGWP-EEAPYDRIIVTA 146 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc--cCCC-CCCCcCEEEEee
Confidence 4588999999999886544322 234999999999877766532 233444432 3333 247899999999
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+...+| +.+..-|||||++++-+.
T Consensus 147 aa~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 147 AAPEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred ccCCCC------HHHHHhcccCCEEEEEEc
Confidence 877776 457888999999998765
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.5e-07 Score=79.93 Aligned_cols=91 Identities=24% Similarity=0.335 Sum_probs=60.6
Q ss_pred eEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCCC------c--eEEeecccccCCCCCCCceeEEEec--ch
Q 023470 100 EVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRLE------Y--FIVKDLNQDQKLEFDHCSFDAVVCA--VS 166 (282)
Q Consensus 100 ~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~------~--~~~~d~~~~~~l~~~~~s~D~v~~~--~~ 166 (282)
+|||+|||+|.. ++...+..+|+|+|+|+++++.|+.+. + ....|.. . ++ .++||+|+|+ +.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf--~--~~-~~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLF--E--PL-RGKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecc--c--cc-CCceeEEEeCCCCC
Confidence 799999998864 344446679999999999997665332 1 2222221 1 22 2489999999 21
Q ss_pred hh---ccC------C--------------HHHHHHHHHHcccCCcEEEEEEc
Q 023470 167 VQ---YLQ------Q--------------PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 167 l~---~~~------~--------------~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
-. +.. + ...++.++.+.|+|||.+++...
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 11 110 1 13378889999999999999865
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.7e-07 Score=79.07 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=65.1
Q ss_pred CCCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCCC------------CceEEeecccccCCC-CCCCce
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPRL------------EYFIVKDLNQDQKLE-FDHCSF 158 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~~------------~~~~~~d~~~~~~l~-~~~~s~ 158 (282)
.++..+||+||||.|....... +..+|+.+|+++++++.+++. .+++++|.. .-+. .++++|
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~--~~l~~~~~~~y 166 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGV--EFLKNAPEGTY 166 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHH--HHHhhccCCCC
Confidence 3567899999999776443322 346899999999988766542 233444431 0111 235689
Q ss_pred eEEEecchhhccCC----HHHHHHHHHHcccCCcEEEEEEc
Q 023470 159 DAVVCAVSVQYLQQ----PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 159 D~v~~~~~l~~~~~----~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|+|++...-.+.+. -.++++.+.+.|+|||.++....
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 99999654332221 24589999999999999987533
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.5e-07 Score=90.81 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=65.2
Q ss_pred CCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCC----------CceEEeecccccCCCCCCCceeEEEec
Q 023470 97 PGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRL----------EYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~----------~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
++.+|||+|||+|...... .+..+|+++|+|+.+++.++.+ ..++.+|+.. -+.-..++||+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~--~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLA--WLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHH--HHHHcCCCcCEEEEC
Confidence 5789999999987643322 2345799999999998765432 2345555421 111114689999996
Q ss_pred ---c--------hhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 165 ---V--------SVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ---~--------~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+ +.....+...++..+.++|+|||.++++..
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 1 122233456688999999999999988753
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.4e-07 Score=83.76 Aligned_cols=100 Identities=15% Similarity=0.142 Sum_probs=63.6
Q ss_pred CCCCCeEEEeCCcccchhhh-hc-CCCeEEEEcCCHHHHHhCCCC----------CceEEeecccc-cCCCCCCCceeEE
Q 023470 95 LRPGSEVLDLMSSWVSHLPQ-EV-SYKRVVGHGLNAQELAKNPRL----------EYFIVKDLNQD-QKLEFDHCSFDAV 161 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~-~~-~~~~v~giD~s~~~l~~~~~~----------~~~~~~d~~~~-~~l~~~~~s~D~v 161 (282)
+.++.+|||+|||+|..... .. +..+|+++|+|+.+++.++.+ ..+..+|+... ..+....++||+|
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 34678999999998874322 22 445999999999998655422 23455555210 0111134689999
Q ss_pred Eec---chh------hccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 162 VCA---VSV------QYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 162 ~~~---~~l------~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
++. +.- ....+...++..+.++|+|||.++...
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 998 111 111234456677899999999988653
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.43 E-value=9e-07 Score=78.18 Aligned_cols=102 Identities=20% Similarity=0.215 Sum_probs=75.5
Q ss_pred hCCCCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCCCC------ceEEeecccccCCCCCCCceeEEEec--
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPRLE------YFIVKDLNQDQKLEFDHCSFDAVVCA-- 164 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~~~------~~~~~d~~~~~~l~~~~~s~D~v~~~-- 164 (282)
.+.+|..|||-=||||..+-.. .-+.+++|+|++.+|++-++.+. .+.+....+...+|++++++|.|++-
T Consensus 194 ~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPP 273 (347)
T COG1041 194 RVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPP 273 (347)
T ss_pred ccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCC
Confidence 3567889999999999876543 46889999999999998777543 22222221228899998999999987
Q ss_pred chhhc---cCC----HHHHHHHHHHcccCCcEEEEEEc
Q 023470 165 VSVQY---LQQ----PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ~~l~~---~~~----~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+.... ... ..++|+.++++||+||++++..|
T Consensus 274 YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 274 YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 22111 112 34589999999999999999977
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.7e-06 Score=67.27 Aligned_cols=95 Identities=35% Similarity=0.396 Sum_probs=65.8
Q ss_pred EEEeCCcccc--hhhhhcCC-CeEEEEcCCHHHHHhCCCCC--------ceEEeecccccCCCCCC-CceeEEEecchhh
Q 023470 101 VLDLMSSWVS--HLPQEVSY-KRVVGHGLNAQELAKNPRLE--------YFIVKDLNQDQKLEFDH-CSFDAVVCAVSVQ 168 (282)
Q Consensus 101 vLDiGcG~~~--~~~~~~~~-~~v~giD~s~~~l~~~~~~~--------~~~~~d~~~~~~l~~~~-~s~D~v~~~~~l~ 168 (282)
++|+|||.|. .+...... ..++|+|+++.+++..+... .+...+... ..+++.+ ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALG-GVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecccc-CCCCCCCCCceeEE-eeeeeh
Confidence 9999999887 34443332 48999999998886533221 344444421 1267766 489999 555444
Q ss_pred ccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 169 YLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+..+....+.++.++|+|+|.+++.....
T Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 130 HLLPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 44348889999999999999999886653
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.5e-07 Score=77.30 Aligned_cols=94 Identities=12% Similarity=0.146 Sum_probs=62.5
Q ss_pred CCCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHhCCCC---------CceEEeecccc-cCC-C-CCCCceeE
Q 023470 97 PGSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQD-QKL-E-FDHCSFDA 160 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~-~~l-~-~~~~s~D~ 160 (282)
+..+|||+|||+|.. ++... +..+|+++|+++++++.++.+ ..+..+|.... ..+ + .++++||+
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 567899999987752 33333 467999999999988665422 23445554211 011 0 12468999
Q ss_pred EEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 161 VVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 161 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|++..- -+.....+..+.+.|||||.+++.
T Consensus 148 VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 148 AFVDAD---KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EEECCC---HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 988532 123456899999999999998876
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-06 Score=81.54 Aligned_cols=96 Identities=21% Similarity=0.251 Sum_probs=62.8
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccc-cCCCCCCCceeEEEecc
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQD-QKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~-~~l~~~~~s~D~v~~~~ 165 (282)
.++.+|||+|||+|....... ...+|+|+|+|+.|++.++. +..+..+|+... ..+++.+++||+|++.-
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP 375 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP 375 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence 367899999999886433322 45799999999999976542 235666665321 12334457899999852
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
- .. .....++.+.+ ++|++.+++++.
T Consensus 376 P--r~-g~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 376 P--RA-GAAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred C--Cc-ChHHHHHHHHh-cCCCeEEEEEeC
Confidence 1 00 12345555555 699999999974
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.3e-06 Score=73.73 Aligned_cols=104 Identities=18% Similarity=0.194 Sum_probs=70.2
Q ss_pred CeEEEeCCcccchhhh---hcCCCeEEEEcCCHHHHHhCC------C--CCceEEeecccccCCCCCCCceeEEEecchh
Q 023470 99 SEVLDLMSSWVSHLPQ---EVSYKRVVGHGLNAQELAKNP------R--LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 99 ~~vLDiGcG~~~~~~~---~~~~~~v~giD~s~~~l~~~~------~--~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
..+||||||.|.++.. ..|...++|+|+....+.++. + +......|...-.+.-+++++.|-|..+|-=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 4799999998876544 448899999999987654321 1 2233333332112222456799999998754
Q ss_pred hccCCH--------HHHHHHHHHcccCCcEEEEEEcCchhHHH
Q 023470 168 QYLQQP--------EKVFAEVFRVLKPGGVFIVSFSNRMFYEK 202 (282)
Q Consensus 168 ~~~~~~--------~~~l~~~~r~LkpgG~li~~~~~~~~~~~ 202 (282)
-|-... ..+++.+.++|||||.+.+.+.+..+...
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 333211 45999999999999999999877655443
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-06 Score=87.36 Aligned_cols=98 Identities=17% Similarity=0.159 Sum_probs=64.0
Q ss_pred CCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC------------------------CceEEeecccccC
Q 023470 98 GSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL------------------------EYFIVKDLNQDQK 150 (282)
Q Consensus 98 ~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~------------------------~~~~~~d~~~~~~ 150 (282)
+.+|||+|||+|.. ++...+..+|+|+|+|+++++.++.+ ..+...|+. ..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~--~~ 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLL--GY 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchh--hh
Confidence 45899999998753 34444667999999999998655321 234455542 11
Q ss_pred CCCCCCceeEEEec--c------------hhhccC--------------C----H------HHHHHHHHHcccCCcEEEE
Q 023470 151 LEFDHCSFDAVVCA--V------------SVQYLQ--------------Q----P------EKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 151 l~~~~~s~D~v~~~--~------------~l~~~~--------------~----~------~~~l~~~~r~LkpgG~li~ 192 (282)
+......||+|||+ + +.+|-+ . . ..++.++.++|||||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 21111369999999 1 221110 1 1 4578889999999999999
Q ss_pred EEcCc
Q 023470 193 SFSNR 197 (282)
Q Consensus 193 ~~~~~ 197 (282)
++...
T Consensus 277 EiG~~ 281 (1082)
T PLN02672 277 NMGGR 281 (1082)
T ss_pred EECcc
Confidence 97653
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.6e-06 Score=70.99 Aligned_cols=98 Identities=20% Similarity=0.273 Sum_probs=59.8
Q ss_pred CCCCeEEEeCCccc-chhhhh-cCCCeEEEEcCCHHHHH-------hCC---------------CC--------------
Q 023470 96 RPGSEVLDLMSSWV-SHLPQE-VSYKRVVGHGLNAQELA-------KNP---------------RL-------------- 137 (282)
Q Consensus 96 ~~~~~vLDiGcG~~-~~~~~~-~~~~~v~giD~s~~~l~-------~~~---------------~~-------------- 137 (282)
.++.++||||||-. ..+... ....+|+..|.++.-++ ... +.
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 35678999999943 222222 24568999999975431 000 00
Q ss_pred -CceEEeecccccCCCC---CCCceeEEEecchhhccC-CHHH---HHHHHHHcccCCcEEEEE
Q 023470 138 -EYFIVKDLNQDQKLEF---DHCSFDAVVCAVSVQYLQ-QPEK---VFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 138 -~~~~~~d~~~~~~l~~---~~~s~D~v~~~~~l~~~~-~~~~---~l~~~~r~LkpgG~li~~ 193 (282)
.....+|+.....++. -...||+|+++++++... |.+. +++++.++|||||.|++.
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 0344566653322221 013599999999999874 5554 899999999999999876
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.3e-06 Score=70.14 Aligned_cols=101 Identities=23% Similarity=0.279 Sum_probs=68.4
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCC-eEEEEcCCHHHHHhCCCCC----------ceEEeecccccCCCCCCCceeEEEe
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYK-RVVGHGLNAQELAKNPRLE----------YFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~-~v~giD~s~~~l~~~~~~~----------~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
+++.+|||.+.|.|....... .++ .|+-++-++..++.++-+. ..+.+|..+ .--.++|.|||+|+-
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e-~V~~~~D~sfDaIiH 211 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE-VVKDFDDESFDAIIH 211 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH-HHhcCCccccceEee
Confidence 358899999888886554432 444 9999999998877665332 344555421 112477999999986
Q ss_pred c---chhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 164 A---VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 164 ~---~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
- +++------+++.+|++|+|||||.++--+.++
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~P 248 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNP 248 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCC
Confidence 4 222111122568999999999999998776665
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.2e-06 Score=69.95 Aligned_cols=98 Identities=14% Similarity=0.163 Sum_probs=72.3
Q ss_pred CCCeEEEeCCcccchhhhhc---C--CCeEEEEcCCHHHHHhCC------CC---CceEEeecccccCCCCCCCceeEEE
Q 023470 97 PGSEVLDLMSSWVSHLPQEV---S--YKRVVGHGLNAQELAKNP------RL---EYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~---~--~~~v~giD~s~~~l~~~~------~~---~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
...+||||.||.|.++.... + ..+|.-.|.|+..+++.+ +. ..|...|.....++.--+-..++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 45789999999998775543 3 368999999997775433 22 2566777644333432234579999
Q ss_pred ecchhhccCCHH---HHHHHHHHcccCCcEEEEEE
Q 023470 163 CAVSVQYLQQPE---KVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 163 ~~~~l~~~~~~~---~~l~~~~r~LkpgG~li~~~ 194 (282)
.+..++.++|-+ ..++-+.++|.|||+++.+-
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 999999998744 47899999999999999884
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.8e-06 Score=73.68 Aligned_cols=93 Identities=14% Similarity=0.082 Sum_probs=58.5
Q ss_pred CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCC-CCCceeEEEecch
Q 023470 97 PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEF-DHCSFDAVVCAVS 166 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~-~~~s~D~v~~~~~ 166 (282)
++.+|||+|||+|....... .+.+|+|+|+|+.|++.++. +..+..+|+ .++.. .++.||+|++.=-
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~---~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDS---TQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCH---HHHHHhcCCCCeEEEECCC
Confidence 46889999999886543322 56799999999999976542 234666666 33221 2357999998621
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.- .....+.++...++|++.+++++.
T Consensus 250 --r~-G~~~~~~~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 250 --RR-GIGKELCDYLSQMAPRFILYSSCN 275 (315)
T ss_pred --CC-CccHHHHHHHHHcCCCeEEEEECC
Confidence 00 111223333444788888888854
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-05 Score=67.70 Aligned_cols=100 Identities=19% Similarity=0.169 Sum_probs=60.5
Q ss_pred HHHHHHHhhC--CCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHh-CCCCCc---eEEeecccc--cCCCCCC
Q 023470 86 TLTNLYRQML--RPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAK-NPRLEY---FIVKDLNQD--QKLEFDH 155 (282)
Q Consensus 86 ~~~~~~~~~~--~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~-~~~~~~---~~~~d~~~~--~~l~~~~ 155 (282)
.+...+...- .++.+|||+|||+|.+.... .+..+|+|+|+++.|+.. .+.... +...++... ++++.+-
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence 4444444432 25678999999988653332 245789999999988753 333222 122222100 1222222
Q ss_pred CceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 156 CSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 156 ~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
..+|+++++..+ ++..+.+.|+| |.+++-+
T Consensus 142 ~~~DvsfiS~~~--------~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 142 ATFDVSFISLIS--------ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred eeeeEEEeehHh--------HHHHHHHHhCc-CeEEEEc
Confidence 468888877653 47899999999 7766554
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.3e-06 Score=68.38 Aligned_cols=105 Identities=20% Similarity=0.221 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEeCCcccchhhh---hc--CCCeEEEEcCCHHHHHhCCCCC------------------
Q 023470 82 GFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQ---EV--SYKRVVGHGLNAQELAKNPRLE------------------ 138 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~---~~--~~~~v~giD~s~~~l~~~~~~~------------------ 138 (282)
..+..+.+.+...+.|+.++||+|+|+|..... .. ++...+|||.-++.++.++++.
T Consensus 67 ~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 67 HMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 466778888888899999999999998754322 11 4556699999888776544221
Q ss_pred ceEEeecccccCCCCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 139 YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 139 ~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.+.++|. ....-+...||.|.+-. ...+..+++...|||||++++-+.
T Consensus 147 ~ivvGDg---r~g~~e~a~YDaIhvGA------aa~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 147 SIVVGDG---RKGYAEQAPYDAIHVGA------AASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred EEEeCCc---cccCCccCCcceEEEcc------CccccHHHHHHhhccCCeEEEeec
Confidence 3445554 44444567899999874 335566888899999999998754
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1e-06 Score=68.48 Aligned_cols=54 Identities=22% Similarity=0.383 Sum_probs=46.4
Q ss_pred cCCCCCCCceeEEEecchhhccCC--HHHHHHHHHHcccCCcEEEEEEcCchhHHH
Q 023470 149 QKLEFDHCSFDAVVCAVSVQYLQQ--PEKVFAEVFRVLKPGGVFIVSFSNRMFYEK 202 (282)
Q Consensus 149 ~~l~~~~~s~D~v~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~~~~~~~~~~ 202 (282)
...+|.++|+|+|.+.++++|+.- -..++++++|+|||||+|-+++|+-.+...
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~ 94 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDW 94 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHH
Confidence 466789999999999999999963 345999999999999999999998766543
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.4e-06 Score=67.97 Aligned_cols=111 Identities=9% Similarity=-0.070 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEeCCcccchhhh--hcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCC
Q 023470 82 GFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQ--EVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKL 151 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~--~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l 151 (282)
...+.+...+... .++.+|||+|||+|..... .....+|+++|+++++++.++.+ ..+...|+. ..+
T Consensus 39 ~v~e~l~~~l~~~-~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~--~~l 115 (199)
T PRK10909 39 RVRETLFNWLAPV-IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNAL--SFL 115 (199)
T ss_pred HHHHHHHHHHhhh-cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHH--HHH
Confidence 3444455544332 3567999999998865432 22457999999999887644322 234445542 122
Q ss_pred CCCCCceeEEEecchhhccCCHHHHHHHHHH--cccCCcEEEEEEcC
Q 023470 152 EFDHCSFDAVVCAVSVQYLQQPEKVFAEVFR--VLKPGGVFIVSFSN 196 (282)
Q Consensus 152 ~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r--~LkpgG~li~~~~~ 196 (282)
+...++||+|++.==.. -.-.+.+++.+.. +|+|+|.++++...
T Consensus 116 ~~~~~~fDlV~~DPPy~-~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 116 AQPGTPHNVVFVDPPFR-KGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred hhcCCCceEEEECCCCC-CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 22245799999973211 1122345555544 47999999998654
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.9e-06 Score=66.37 Aligned_cols=102 Identities=21% Similarity=0.183 Sum_probs=60.0
Q ss_pred CCCCCeEEEeCCcccc--hhhhhc-CCCeEEEEcCCHHHHHhC-------C----CCCceEEeeccccc-CCCCCCCcee
Q 023470 95 LRPGSEVLDLMSSWVS--HLPQEV-SYKRVVGHGLNAQELAKN-------P----RLEYFIVKDLNQDQ-KLEFDHCSFD 159 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~--~~~~~~-~~~~v~giD~s~~~l~~~-------~----~~~~~~~~d~~~~~-~l~~~~~s~D 159 (282)
..++.+|||+|||+|. ..+... +..+|+..|..+ .+... . ....+...+-.... .-....++||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 3467899999998763 233333 678999999998 44321 1 11122233322110 0012346899
Q ss_pred EEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 160 AVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 160 ~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+|+++.++..-...+.+++-+.++|+|+|.+++..+.+
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 99999999988888889999999999999988887654
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.2e-05 Score=68.84 Aligned_cols=98 Identities=23% Similarity=0.230 Sum_probs=66.4
Q ss_pred hCCCCCeEEEeCCcccch---hhhh-cCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCC-CCCCcee
Q 023470 94 MLRPGSEVLDLMSSWVSH---LPQE-VSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLE-FDHCSFD 159 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~---~~~~-~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~-~~~~s~D 159 (282)
.+.||.+|||.|.|.|.. ++.. .+..+|+..|+.++..+.|++ +..+...|+.. ..++ ..+..+|
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~-~g~~~~~~~~~D 115 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE-EGFDEELESDFD 115 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC-G--STT-TTSEE
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec-ccccccccCccc
Confidence 567999999999998764 3322 277899999999987765542 23455666632 1121 1136799
Q ss_pred EEEecchhhccCCHHHHHHHHHHcc-cCCcEEEEEEcCc
Q 023470 160 AVVCAVSVQYLQQPEKVFAEVFRVL-KPGGVFIVSFSNR 197 (282)
Q Consensus 160 ~v~~~~~l~~~~~~~~~l~~~~r~L-kpgG~li~~~~~~ 197 (282)
.|+. -+++|..++..+.++| ||||++++-.|.-
T Consensus 116 avfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 116 AVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp EEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred EEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 9988 6789999999999999 9999998877763
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.8e-05 Score=68.24 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhhCC------CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhC-------CCCC----------
Q 023470 83 FISTLTNLYRQMLR------PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKN-------PRLE---------- 138 (282)
Q Consensus 83 ~~~~~~~~~~~~~~------~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~-------~~~~---------- 138 (282)
.+..+...+.+..+ .+.+||--|||.|+..-... .+..+.|.|.|--|+-.. .+..
T Consensus 36 ~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 36 CYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceec
Confidence 44555555555544 24689999999987654332 578999999998886221 1000
Q ss_pred ------------ceEEeecccc----------------cCCCCC---CCceeEEEecchhhccCCHHHHHHHHHHcccCC
Q 023470 139 ------------YFIVKDLNQD----------------QKLEFD---HCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPG 187 (282)
Q Consensus 139 ------------~~~~~d~~~~----------------~~l~~~---~~s~D~v~~~~~l~~~~~~~~~l~~~~r~Lkpg 187 (282)
.+.+-|+... .++..+ .++||+|+++|.|.-.++.-+.|+.|+++||||
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPG 195 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccC
Confidence 1111111000 111122 368999999999999899999999999999999
Q ss_pred cEEE
Q 023470 188 GVFI 191 (282)
Q Consensus 188 G~li 191 (282)
|..|
T Consensus 196 G~WI 199 (270)
T PF07942_consen 196 GYWI 199 (270)
T ss_pred CEEE
Confidence 9554
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.8e-05 Score=63.93 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=53.9
Q ss_pred CCCeEEEeCCcccchh--hhhcCCCeEEEEcCCHHHHHhCCCCC-------ceEEeecccccCCCCCCCceeEEEec--c
Q 023470 97 PGSEVLDLMSSWVSHL--PQEVSYKRVVGHGLNAQELAKNPRLE-------YFIVKDLNQDQKLEFDHCSFDAVVCA--V 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~--~~~~~~~~v~giD~s~~~l~~~~~~~-------~~~~~d~~~~~~l~~~~~s~D~v~~~--~ 165 (282)
.+..|+|+|||+|... +...+..+|+|+|+++++++.++.+. .+.+.|+ ... ...+|.++++ |
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv---~~~---~~~~dtvimNPPF 118 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADV---SDF---RGKFDTVIMNPPF 118 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcch---hhc---CCccceEEECCCC
Confidence 5678999999998643 33447789999999999998776543 4566665 344 3668899998 4
Q ss_pred hh--hccCCHHHHHHHHHHc
Q 023470 166 SV--QYLQQPEKVFAEVFRV 183 (282)
Q Consensus 166 ~l--~~~~~~~~~l~~~~r~ 183 (282)
.. .| .| ..++..+.+.
T Consensus 119 G~~~rh-aD-r~Fl~~Ale~ 136 (198)
T COG2263 119 GSQRRH-AD-RPFLLKALEI 136 (198)
T ss_pred cccccc-CC-HHHHHHHHHh
Confidence 43 34 23 3355555555
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.1e-06 Score=76.89 Aligned_cols=106 Identities=12% Similarity=0.180 Sum_probs=70.6
Q ss_pred CCeEEEeCCcccchhhh---hcCCCeEEEEcCCHHHHHhC------CCCCceEE--eecccccCCCCCCCceeEEEecch
Q 023470 98 GSEVLDLMSSWVSHLPQ---EVSYKRVVGHGLNAQELAKN------PRLEYFIV--KDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~---~~~~~~v~giD~s~~~l~~~------~~~~~~~~--~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
+..+||||||.|.++.. ..+...++|+|++...+.++ .+..+..+ .+... ..--++++++|.|+.+|-
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~-~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDL-ILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHH-HHHhcCcccccEEEEECC
Confidence 45689999998876544 34889999999998755432 12223222 22210 011267899999999875
Q ss_pred hhccCC--------HHHHHHHHHHcccCCcEEEEEEcCchhHHHHH
Q 023470 167 VQYLQQ--------PEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAI 204 (282)
Q Consensus 167 l~~~~~--------~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~ 204 (282)
=-|-.. -..+++.++++|||||.+.+.+.+..+.....
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~ 472 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAI 472 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence 433321 14589999999999999999987766555433
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.4e-05 Score=74.28 Aligned_cols=97 Identities=18% Similarity=0.145 Sum_probs=61.6
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccc-cCCCCCCCceeEEEecc
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQD-QKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~-~~l~~~~~s~D~v~~~~ 165 (282)
.++.+|||+|||+|....... ...+|+|+|+++.|++.++. +..+..+|.... ..+++.+++||+|++.-
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 356789999999886543332 45689999999999976543 234566665210 12233456799999742
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
- ...-...+++.+.+ ++|++.++++..
T Consensus 371 P--r~G~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 371 P--RKGCAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred C--CCCCCHHHHHHHHh-cCCCEEEEEcCC
Confidence 1 01112456666554 899998888753
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.6e-06 Score=62.47 Aligned_cols=90 Identities=14% Similarity=0.161 Sum_probs=56.6
Q ss_pred CCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCC-CceEEeecccccCCCCCCCceeEEEecchhhccCCH
Q 023470 97 PGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRL-EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~-~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~ 173 (282)
++.+|||||||.|..++.. ..+.+|+|+|+++..++.++.. ....+.|+.. .++.+ -..+|+|.+..-- ++.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~-p~~~~-y~~a~liysirpp---~el 90 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFN-PNLEI-YKNAKLIYSIRPP---RDL 90 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCC-CCHHH-HhcCCEEEEeCCC---HHH
Confidence 3578999999987533322 2578999999999998876654 3677777743 23333 2558999987531 122
Q ss_pred HHHHHHHHHcccCCcEEEEE
Q 023470 174 EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 174 ~~~l~~~~r~LkpgG~li~~ 193 (282)
...+.++.+-+ |.-+++.
T Consensus 91 ~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 91 QPFILELAKKI--NVPLIIK 108 (134)
T ss_pred HHHHHHHHHHc--CCCEEEE
Confidence 33333443332 4556665
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.2e-06 Score=70.88 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=46.2
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC-----CCceEEeecccccCCCCCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR-----LEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~-----~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
+.++.+|||+|||+|....... .+.+|+|+|++++|++.++. ...+..+|+ ..+++++-.+|.|+++-
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~---~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDA---LKVDLSELQPLKVVANL 113 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChh---hcCCHHHcCcceEEEeC
Confidence 3467899999999886543322 34599999999999976543 234566666 55555432257888873
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00011 Score=65.21 Aligned_cols=133 Identities=13% Similarity=0.203 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEeCCcccchh---hh----hcCCCeEEEEcCCHHHHHhCCC------CCce----EEee
Q 023470 82 GFISTLTNLYRQMLRPGSEVLDLMSSWVSHL---PQ----EVSYKRVVGHGLNAQELAKNPR------LEYF----IVKD 144 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~---~~----~~~~~~v~giD~s~~~l~~~~~------~~~~----~~~d 144 (282)
..++.-...+...++++..++|+|||.+... .. ......++++|+|.++|+.+.. .... +.+|
T Consensus 61 ~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gd 140 (319)
T TIGR03439 61 EILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGT 140 (319)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEec
Confidence 3444555556667778889999999976541 11 1135789999999998854321 1112 3444
Q ss_pred cccccC-CCC--CCCceeEEEec-chhhccCCHH--HHHHHHHH-cccCCcEEEEEEcCchhHHHHHHhhhcCCCCc
Q 023470 145 LNQDQK-LEF--DHCSFDAVVCA-VSVQYLQQPE--KVFAEVFR-VLKPGGVFIVSFSNRMFYEKAISAWRDGTAYG 214 (282)
Q Consensus 145 ~~~~~~-l~~--~~~s~D~v~~~-~~l~~~~~~~--~~l~~~~r-~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~ 214 (282)
+..... ++- ......+++.. .+|.+++..+ .+|+++++ .|+|||.|++.+....-.......+.+..+.+
T Consensus 141 y~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvT 217 (319)
T TIGR03439 141 YDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVT 217 (319)
T ss_pred HHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchh
Confidence 432111 221 11234555555 5788886554 48999999 99999999997654434444455555544444
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.1e-05 Score=73.32 Aligned_cols=106 Identities=23% Similarity=0.250 Sum_probs=69.6
Q ss_pred HHhhCCCCCeEEEeCC--cccchhhhhcCCCeEEEEcCCHHHHHhCCCC----------CceEEeecccc-cCCCCCCCc
Q 023470 91 YRQMLRPGSEVLDLMS--SWVSHLPQEVSYKRVVGHGLNAQELAKNPRL----------EYFIVKDLNQD-QKLEFDHCS 157 (282)
Q Consensus 91 ~~~~~~~~~~vLDiGc--G~~~~~~~~~~~~~v~giD~s~~~l~~~~~~----------~~~~~~d~~~~-~~l~~~~~s 157 (282)
+...+. +.+|||+-| |..+..+...+..+|+++|+|...++.++++ ..++++|+-.- ....-....
T Consensus 212 l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~ 290 (393)
T COG1092 212 LGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEK 290 (393)
T ss_pred Hhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCc
Confidence 344444 899999999 4333333333445999999999999776533 24666665211 112223458
Q ss_pred eeEEEec---------chhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 158 FDAVVCA---------VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 158 ~D~v~~~---------~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
||+|+.- ....-..+...++..+.++|+|||.++++....
T Consensus 291 fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 291 FDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred ccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 9999986 122223355668999999999999999886544
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.2e-05 Score=65.68 Aligned_cols=92 Identities=13% Similarity=0.178 Sum_probs=64.0
Q ss_pred CCCeEEEeCCcccc---hhhhhcC-CCeEEEEcCCHHHHHhCCCCC---------ceEE-eecccccCCC-CCCCceeEE
Q 023470 97 PGSEVLDLMSSWVS---HLPQEVS-YKRVVGHGLNAQELAKNPRLE---------YFIV-KDLNQDQKLE-FDHCSFDAV 161 (282)
Q Consensus 97 ~~~~vLDiGcG~~~---~~~~~~~-~~~v~giD~s~~~l~~~~~~~---------~~~~-~d~~~~~~l~-~~~~s~D~v 161 (282)
+..+|||||.+.|. .++...+ ..+++.+|+++++.+.|+++. .... +|.. +.+. ...++||+|
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal--~~l~~~~~~~fDli 136 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL--DVLSRLLDGSFDLV 136 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH--HHHHhccCCCccEE
Confidence 67789999996553 3455555 779999999999987765321 2233 1221 2222 456899999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+.-.. =.+-..++..+.+.|+|||.+++.
T Consensus 137 FIDad---K~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 137 FIDAD---KADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EEeCC---hhhCHHHHHHHHHHhCCCcEEEEe
Confidence 98542 123466999999999999999986
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.2e-05 Score=67.99 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCC
Q 023470 81 GGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEF 153 (282)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~ 153 (282)
....+.+.+.+ .+.++.+|||||||+|....... .+.+|+|+|+++.|++.++. +..+..+|+ ..+++
T Consensus 15 ~~~~~~iv~~~--~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~---~~~~~ 89 (258)
T PRK14896 15 DRVVDRIVEYA--EDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDA---LKVDL 89 (258)
T ss_pred HHHHHHHHHhc--CCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEecc---ccCCc
Confidence 34444444433 24467899999999886543322 35799999999999865442 234556666 55555
Q ss_pred CCCceeEEEecch
Q 023470 154 DHCSFDAVVCAVS 166 (282)
Q Consensus 154 ~~~s~D~v~~~~~ 166 (282)
+ .+|.|+++.-
T Consensus 90 ~--~~d~Vv~NlP 100 (258)
T PRK14896 90 P--EFNKVVSNLP 100 (258)
T ss_pred h--hceEEEEcCC
Confidence 3 4899999854
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.8e-05 Score=70.05 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhC--CCCCeEEEeCCcccchhhh-hcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCC
Q 023470 83 FISTLTNLYRQML--RPGSEVLDLMSSWVSHLPQ-EVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKL 151 (282)
Q Consensus 83 ~~~~~~~~~~~~~--~~~~~vLDiGcG~~~~~~~-~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l 151 (282)
..+.+...+...+ .++.+|||+|||+|..... ...+.+|+|+|+++.+++.++.+ ..+..+|+.. .+
T Consensus 217 ~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~--~~ 294 (374)
T TIGR02085 217 VAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAK--FA 294 (374)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHH--HH
Confidence 3334444443332 2467899999998864332 23567999999999998755422 2455555521 11
Q ss_pred CCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 152 EFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 152 ~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
....++||+|++.==-. .-...+++.+. .++|++.++++..
T Consensus 295 ~~~~~~~D~vi~DPPr~--G~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 295 TAQMSAPELVLVNPPRR--GIGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred HhcCCCCCEEEECCCCC--CCcHHHHHHHH-hcCCCeEEEEEeC
Confidence 11124599998862100 11134555554 4799999999863
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.5e-05 Score=64.45 Aligned_cols=66 Identities=18% Similarity=0.176 Sum_probs=43.7
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC------CceEEeecccccCCCCCCCcee---EEEecc
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL------EYFIVKDLNQDQKLEFDHCSFD---AVVCAV 165 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~------~~~~~~d~~~~~~l~~~~~s~D---~v~~~~ 165 (282)
.++.+|||+|||+|....... .+..|+++|+++.+++.++.. ..+..+|. ..++++ ++| +|+++.
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~---~~~~~~--~~d~~~~vvsNl 102 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDA---LKVDLP--DFPKQLKVVSNL 102 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECch---hcCChh--HcCCcceEEEcC
Confidence 467899999999987544432 346799999999998655422 23445555 455543 466 777764
Q ss_pred h
Q 023470 166 S 166 (282)
Q Consensus 166 ~ 166 (282)
-
T Consensus 103 P 103 (253)
T TIGR00755 103 P 103 (253)
T ss_pred C
Confidence 3
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.7e-05 Score=61.14 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=50.4
Q ss_pred CCCeEEEeCCcccchh-hh-hcCCCeEEEEcCCHHHHHhCCCCC-------ceEEeecccccCCCCCCCceeEEEecc
Q 023470 97 PGSEVLDLMSSWVSHL-PQ-EVSYKRVVGHGLNAQELAKNPRLE-------YFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~-~~-~~~~~~v~giD~s~~~l~~~~~~~-------~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
.+.+++|+|||.|... +. ......|.|+||.+++++.++.+. ++.++++ .++.+..+.||.++.+-
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdi---ldle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDI---LDLELKGGIFDTAVINP 122 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeec---cchhccCCeEeeEEecC
Confidence 6788999999987644 22 236789999999999998876553 5667777 56666668899999883
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.5e-05 Score=71.59 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=56.1
Q ss_pred CCeEEEeCCcccchhhhh--c-----CCCeEEEEcCCHHHHHh------CC---CCCceEEeecccccCCCCCCCceeEE
Q 023470 98 GSEVLDLMSSWVSHLPQE--V-----SYKRVVGHGLNAQELAK------NP---RLEYFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~--~-----~~~~v~giD~s~~~l~~------~~---~~~~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
+..|||||||.|-..... . ...+|++++-|+.++.. .. +...++.+|+ +++..+ ..+|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~---r~v~lp-ekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDM---REVELP-EKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-T---TTSCHS-S-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcc---cCCCCC-CceeEE
Confidence 467999999988643211 1 35799999999764421 11 3346677777 777665 489999
Q ss_pred Eecchhhcc--CCHHHHHHHHHHcccCCcEEE
Q 023470 162 VCAVSVQYL--QQPEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 162 ~~~~~l~~~--~~~~~~l~~~~r~LkpgG~li 191 (282)
||-..=... .-..+.|..+.|.|||||.++
T Consensus 263 VSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 263 VSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 997321111 234568999999999999874
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.7e-05 Score=63.65 Aligned_cols=99 Identities=25% Similarity=0.312 Sum_probs=62.4
Q ss_pred CCCCCeEEEeCCcccchhhhh---cCCCe---------EEEEcCCHHHHHhCCCC---------CceEEeecccccCCCC
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE---VSYKR---------VVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEF 153 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~---~~~~~---------v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~ 153 (282)
..++..|||--||+|..+... ..... ++|.|+++++++.++.+ ..+...|. ..+++
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~---~~l~~ 102 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA---RELPL 102 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G---GGGGG
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch---hhccc
Confidence 346788999999988765332 13333 89999999999765432 24555666 77887
Q ss_pred CCCceeEEEec--chhhccC--CH----HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 154 DHCSFDAVVCA--VSVQYLQ--QP----EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 154 ~~~s~D~v~~~--~~l~~~~--~~----~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.++++|+|+++ +....-. +. ..+++++.++|++ ..+++...+.
T Consensus 103 ~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~ 153 (179)
T PF01170_consen 103 PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNR 153 (179)
T ss_dssp TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCC
T ss_pred ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCH
Confidence 78899999999 3332221 11 2378999999999 4444444443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.85 E-value=8.4e-05 Score=66.56 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=62.6
Q ss_pred CCCCeEEEeCCcccchhhh---hcCCCeEEEEcCCHHHHHhCCCCC------------ceEEeecccccCCCCCCCceeE
Q 023470 96 RPGSEVLDLMSSWVSHLPQ---EVSYKRVVGHGLNAQELAKNPRLE------------YFIVKDLNQDQKLEFDHCSFDA 160 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~---~~~~~~v~giD~s~~~l~~~~~~~------------~~~~~d~~~~~~l~~~~~s~D~ 160 (282)
+...+||.||+|.|..... ..+..+|+.+|+++++++.+++.. ++.+.|.. .-+...+++||+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~--~~L~~~~~~yDv 179 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDAR--AELEKRDEKFDV 179 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhH--HHHhhCCCCccE
Confidence 3457899999997754432 224578999999999998765432 23333331 112333578999
Q ss_pred EEecchhhc--cC----CHHHHHH-HHHHcccCCcEEEEEE
Q 023470 161 VVCAVSVQY--LQ----QPEKVFA-EVFRVLKPGGVFIVSF 194 (282)
Q Consensus 161 v~~~~~l~~--~~----~~~~~l~-~~~r~LkpgG~li~~~ 194 (282)
|++-..=.. .+ --.++++ .+.+.|+|||.+++..
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 998732100 00 0235777 8999999999998764
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.3e-05 Score=65.71 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=63.2
Q ss_pred CeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHH-hCCCC---CceEEeecccccCCCCCCCceeEEEecchhhccCCH
Q 023470 99 SEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELA-KNPRL---EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 99 ~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~-~~~~~---~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~ 173 (282)
...+|+|.|.|..+.... .+.+|.++++....+. .+... ...+.+|.- .+.|- -|+|++-++|||.+|.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmf--q~~P~----~daI~mkWiLhdwtDe 252 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMF--QDTPK----GDAIWMKWILHDWTDE 252 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceeccccc--ccCCC----cCeEEEEeecccCChH
Confidence 567999999887654433 4556888988876553 33333 233444442 23442 3699999999999854
Q ss_pred --HHHHHHHHHcccCCcEEEEE
Q 023470 174 --EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 174 --~~~l~~~~r~LkpgG~li~~ 193 (282)
.++|++++..|+|||.+++.
T Consensus 253 dcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 253 DCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred HHHHHHHHHHHhCCCCCEEEEE
Confidence 56999999999999999876
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00017 Score=61.96 Aligned_cols=95 Identities=23% Similarity=0.311 Sum_probs=56.3
Q ss_pred CeEEEeCCcc---c--chhhh-hcCCCeEEEEcCCHHHHHhCC------CC--CceEEeecccc----------cCCCCC
Q 023470 99 SEVLDLMSSW---V--SHLPQ-EVSYKRVVGHGLNAQELAKNP------RL--EYFIVKDLNQD----------QKLEFD 154 (282)
Q Consensus 99 ~~vLDiGcG~---~--~~~~~-~~~~~~v~giD~s~~~l~~~~------~~--~~~~~~d~~~~----------~~l~~~ 154 (282)
...||||||. + ...++ ..+.++|+.+|+.+-.++.++ .. ..++.+|+... .-+.+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~- 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF- 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T-
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC-
Confidence 3599999993 1 12222 248999999999997776443 22 35777777442 12333
Q ss_pred CCceeEEEecchhhccC---CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 155 HCSFDAVVCAVSVQYLQ---QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 155 ~~s~D~v~~~~~l~~~~---~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+..+ .+++..+|||++ ++..+++.+...|.||.+|+++-.
T Consensus 149 ~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 149 DRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp TS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 2333 677788999996 567799999999999999999843
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.5e-05 Score=63.05 Aligned_cols=94 Identities=17% Similarity=0.194 Sum_probs=61.7
Q ss_pred CCCeEEEeCCcccc---hhhhhc-CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccc-cCCC--CCCCceeE
Q 023470 97 PGSEVLDLMSSWVS---HLPQEV-SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQD-QKLE--FDHCSFDA 160 (282)
Q Consensus 97 ~~~~vLDiGcG~~~---~~~~~~-~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~-~~l~--~~~~s~D~ 160 (282)
+..+||||||++|. .++... +.++|+.+|++++..+.++. ...+..++.... ..+. .+.+.||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 45689999997664 334333 46899999999987765532 224455554211 1111 11358999
Q ss_pred EEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 161 VVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 161 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|+.-..= .+-...+..+.+.|+|||.+++.
T Consensus 125 VFiDa~K---~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 125 VFIDADK---RNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEEESTG---GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcccc---cchhhHHHHHhhhccCCeEEEEc
Confidence 9987531 24456888899999999999987
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00011 Score=67.56 Aligned_cols=99 Identities=23% Similarity=0.328 Sum_probs=72.6
Q ss_pred HHhhCCCCC-eEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHh----C-CC--CCceEEeecccccCCCCCCCceeE
Q 023470 91 YRQMLRPGS-EVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAK----N-PR--LEYFIVKDLNQDQKLEFDHCSFDA 160 (282)
Q Consensus 91 ~~~~~~~~~-~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~----~-~~--~~~~~~~d~~~~~~l~~~~~s~D~ 160 (282)
+...+.+.. ++|-+|||........ .+...|+.+|+|+-.++. . +. ...+...|. ..+.|++++||+
T Consensus 41 i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~---~~l~fedESFdi 117 (482)
T KOG2352|consen 41 IMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDM---DQLVFEDESFDI 117 (482)
T ss_pred HHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecc---hhccCCCcceeE
Confidence 444555666 9999999976544333 277899999999865542 2 11 225666776 788999999999
Q ss_pred EEecchhhccC-C---------HHHHHHHHHHcccCCcEEEE
Q 023470 161 VVCAVSVQYLQ-Q---------PEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 161 v~~~~~l~~~~-~---------~~~~l~~~~r~LkpgG~li~ 192 (282)
|+--..++++- + ....+.+++|+|+|||+.+.
T Consensus 118 VIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 118 VIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred EEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 99999998883 1 12368999999999999764
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.78 E-value=5.2e-05 Score=65.87 Aligned_cols=92 Identities=11% Similarity=0.108 Sum_probs=61.6
Q ss_pred CCCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCC-----CCCCce
Q 023470 97 PGSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLE-----FDHCSF 158 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~-----~~~~s~ 158 (282)
+..+|||||||+|.. ++... +..+|+++|.+++..+.++. ...+..++.. +.|+ ..+++|
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~--e~L~~l~~~~~~~~F 195 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA--ESLKSMIQNGEGSSY 195 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH--HHHHHHHhcccCCCC
Confidence 467899999987653 33323 36689999999987765542 2244455442 2221 123689
Q ss_pred eEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 159 DAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 159 D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|+|+.-.- -.+....++.+.+.|+|||.+++.
T Consensus 196 D~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 196 DFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 99998642 123456889999999999999886
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=9.9e-06 Score=66.13 Aligned_cols=93 Identities=17% Similarity=0.259 Sum_probs=69.4
Q ss_pred CCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCHHHH
Q 023470 98 GSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKV 176 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~ 176 (282)
..++||+|+|-|....... -..+|++.+.|..|..+-++...-+...+ +..-.+-.||+|.|...|.-..++-+.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~----ew~~t~~k~dli~clNlLDRc~~p~kL 188 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEI----EWLQTDVKLDLILCLNLLDRCFDPFKL 188 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeeeh----hhhhcCceeehHHHHHHHHhhcChHHH
Confidence 4689999999776544433 34579999999999987655442222222 222234569999999999988899999
Q ss_pred HHHHHHcccC-CcEEEEEE
Q 023470 177 FAEVFRVLKP-GGVFIVSF 194 (282)
Q Consensus 177 l~~~~r~Lkp-gG~li~~~ 194 (282)
++.++.+|.| +|+++++.
T Consensus 189 L~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 189 LEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHHHHhccCCCcEEEEE
Confidence 9999999999 89988763
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00012 Score=60.41 Aligned_cols=101 Identities=20% Similarity=0.363 Sum_probs=66.0
Q ss_pred hCCCCCeEEEeCC---cccchhhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccccC---C--CCCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMS---SWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQK---L--EFDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGc---G~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~---l--~~~~~s~D~v~~~ 164 (282)
.+.++..|+|+|| ||...++... ....|+|+|+.+-..- ....++++|+..... + .+....+|+|+|-
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~---~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD 118 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI---PGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSD 118 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC---CCceEEeeeccCccHHHHHHHHcCCCCcceEEec
Confidence 4568899999999 5777666654 4556999999874321 114577788765411 1 2344558999976
Q ss_pred chh--------hccC--CH-HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 165 VSV--------QYLQ--QP-EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 165 ~~l--------~~~~--~~-~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.+- .|.. .. ..++.-+..+|+|||.+++.+-..
T Consensus 119 ~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 119 MAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 432 2221 11 236777788999999999886544
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.9e-05 Score=67.49 Aligned_cols=68 Identities=22% Similarity=0.231 Sum_probs=42.2
Q ss_pred CCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCCC--------ce--EE-eecccc-cCCCCCCCceeEE
Q 023470 97 PGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRLE--------YF--IV-KDLNQD-QKLEFDHCSFDAV 161 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~--------~~--~~-~d~~~~-~~l~~~~~s~D~v 161 (282)
++.+|||||||.|.. ++...++++++|+|+++.+++.|+.+. .. .. .+.... ..+..+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457899999997643 333346789999999999887654221 11 11 111000 1111246789999
Q ss_pred Eec
Q 023470 162 VCA 164 (282)
Q Consensus 162 ~~~ 164 (282)
+|+
T Consensus 194 vcN 196 (321)
T PRK11727 194 LCN 196 (321)
T ss_pred EeC
Confidence 999
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00026 Score=61.09 Aligned_cols=98 Identities=19% Similarity=0.155 Sum_probs=65.4
Q ss_pred CCCCCeEEEeCCcccchhhhhcCC-CeEEEEcCCHHHHHhCCCCCceEEeecccc-----cCC-CCCCCceeEEEecchh
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEVSY-KRVVGHGLNAQELAKNPRLEYFIVKDLNQD-----QKL-EFDHCSFDAVVCAVSV 167 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~~~-~~v~giD~s~~~l~~~~~~~~~~~~d~~~~-----~~l-~~~~~s~D~v~~~~~l 167 (282)
.+...+||=||.|-|..+....+. .+|+-+||++++++.+++......+.+.+. ..+ .-..++||+|++-..
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs~- 148 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQE- 148 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcCC-
Confidence 345689999999987766655432 499999999999987775211000101000 001 112368999998743
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
......+.++|.|+|||.++.....+
T Consensus 149 ----~~~~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 149 ----PDIHKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred ----CChHHHHHHHHhcCCCcEEEECCCCc
Confidence 44778899999999999999864443
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00051 Score=55.20 Aligned_cols=100 Identities=16% Similarity=0.153 Sum_probs=63.1
Q ss_pred CCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHh-------CCCCCceEEeecccccCCCCCCCceeEEEec--
Q 023470 98 GSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAK-------NPRLEYFIVKDLNQDQKLEFDHCSFDAVVCA-- 164 (282)
Q Consensus 98 ~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~-------~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~-- 164 (282)
...+||||||.|.. ++... ++.-..++|+++.+++. .+.....+..|+.. . +..+++|+++.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~--~--l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS--G--LRNESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh--h--hccCCccEEEECCC
Confidence 45689999998753 33322 67788999999998754 22333556666532 2 334889999888
Q ss_pred chh--------hcc-------CCH----HHHHHHHHHcccCCcEEEEEEcCchhHH
Q 023470 165 VSV--------QYL-------QQP----EKVFAEVFRVLKPGGVFIVSFSNRMFYE 201 (282)
Q Consensus 165 ~~l--------~~~-------~~~----~~~l~~~~r~LkpgG~li~~~~~~~~~~ 201 (282)
++. +.+ .+- +.++..+-.+|.|.|.+++.........
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ 175 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPK 175 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHH
Confidence 221 111 121 2356666677889999998865544333
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00042 Score=60.47 Aligned_cols=95 Identities=20% Similarity=0.139 Sum_probs=57.4
Q ss_pred CCCeEEEeCCcccchhhh--h-c-CCCeEEEEcCCHHHHHhCCCCCc----e----EEeecccccCCCCCCCceeEEEec
Q 023470 97 PGSEVLDLMSSWVSHLPQ--E-V-SYKRVVGHGLNAQELAKNPRLEY----F----IVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~--~-~-~~~~v~giD~s~~~l~~~~~~~~----~----~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
...+|||+|||.|..+-. . . ...+++++|.|+.|++.++.... . ....... ...++. ..|+|+++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~--~~DLvi~s 109 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYR-DFLPFP--PDDLVIAS 109 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhc-ccccCC--CCcEEEEe
Confidence 356899999986543211 1 1 35689999999999875543210 0 0011100 122332 23999999
Q ss_pred chhhccCC--HHHHHHHHHHcccCCcEEEEEEcC
Q 023470 165 VSVQYLQQ--PEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 165 ~~l~~~~~--~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++|..+++ ...+++.+++.+.+ .|++.-|+
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 99999987 22377777777665 66655444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00015 Score=63.83 Aligned_cols=66 Identities=23% Similarity=0.255 Sum_probs=45.1
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
+.++.+|||||||+|....... .+.+|+|+|+++.|++.++. ...+..+|+ ...++ ..||+|+++
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da---l~~~~--~~~d~VvaN 108 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA---LKTEF--PYFDVCVAN 108 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH---hhhcc--cccCEEEec
Confidence 4577899999999887543332 45789999999999865432 234555555 33333 468999887
Q ss_pred c
Q 023470 165 V 165 (282)
Q Consensus 165 ~ 165 (282)
.
T Consensus 109 l 109 (294)
T PTZ00338 109 V 109 (294)
T ss_pred C
Confidence 3
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00039 Score=57.63 Aligned_cols=96 Identities=21% Similarity=0.274 Sum_probs=55.9
Q ss_pred HHHHHhhCCCCCeEEEeCCcccchhhhh---cCCCeEEEEcCCHHHHHh-------CC--CCCceEEeecccccCCCCCC
Q 023470 88 TNLYRQMLRPGSEVLDLMSSWVSHLPQE---VSYKRVVGHGLNAQELAK-------NP--RLEYFIVKDLNQDQKLEFDH 155 (282)
Q Consensus 88 ~~~~~~~~~~~~~vLDiGcG~~~~~~~~---~~~~~v~giD~s~~~l~~-------~~--~~~~~~~~d~~~~~~l~~~~ 155 (282)
...+.+.+.++..|+|+.||.|.+.... .+...|+++|+++.+++. .+ .......+|. ..+.. .
T Consensus 92 r~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~---~~~~~-~ 167 (200)
T PF02475_consen 92 RRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDA---REFLP-E 167 (200)
T ss_dssp HHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-G---GG----T
T ss_pred HHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCH---HHhcC-c
Confidence 3445566778999999999988654332 267889999999976632 21 1123344554 44433 6
Q ss_pred CceeEEEecchhhccCCHHHHHHHHHHcccCCcEEE
Q 023470 156 CSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 156 ~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 191 (282)
+.+|.|++..- ..-..++..+.+++|+||.+.
T Consensus 168 ~~~drvim~lp----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 168 GKFDRVIMNLP----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp T-EEEEEE--T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred cccCEEEECCh----HHHHHHHHHHHHHhcCCcEEE
Confidence 88999999642 122357788999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00019 Score=63.71 Aligned_cols=99 Identities=19% Similarity=0.288 Sum_probs=60.8
Q ss_pred CCCeEEEeCCcccchhhhhc----------CCCeEEEEcCCHHHHHhCC------C--CC--ceEEeecccccCCCC-CC
Q 023470 97 PGSEVLDLMSSWVSHLPQEV----------SYKRVVGHGLNAQELAKNP------R--LE--YFIVKDLNQDQKLEF-DH 155 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~----------~~~~v~giD~s~~~l~~~~------~--~~--~~~~~d~~~~~~l~~-~~ 155 (282)
++.+|+|.+||+|.++.... ...+++|+|+++.++..++ . .. .....|.-. .... ..
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~--~~~~~~~ 123 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLE--NDKFIKN 123 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTT--SHSCTST
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccc--ccccccc
Confidence 55689999999988764432 5679999999998765432 1 11 233444311 1111 24
Q ss_pred CceeEEEec--chhh-c----cC-C------------H-HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 156 CSFDAVVCA--VSVQ-Y----LQ-Q------------P-EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 156 ~s~D~v~~~--~~l~-~----~~-~------------~-~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
..||+|+++ +... + .. + . -.++..+.+.||+||++.+.+|+.
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 789999999 3332 1 00 1 1 137899999999999999888864
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00045 Score=56.91 Aligned_cols=110 Identities=8% Similarity=-0.022 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCCC---------CceEEeecccc-cC
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQD-QK 150 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~-~~ 150 (282)
..+.+...+...+ ++.+|||++||+|....... ....|+++|.++.+++.++.+ ..+...|+... ..
T Consensus 36 vrea~f~~l~~~~-~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~ 114 (189)
T TIGR00095 36 VRELFFNILRPEI-QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKF 114 (189)
T ss_pred HHHHHHHHHHHhc-CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHH
Confidence 3444444444332 57899999999886543332 345899999999877543321 23444454210 01
Q ss_pred CCCCCCceeEEEec--chhhccCCHHHHHHHHH--HcccCCcEEEEEEcC
Q 023470 151 LEFDHCSFDAVVCA--VSVQYLQQPEKVFAEVF--RVLKPGGVFIVSFSN 196 (282)
Q Consensus 151 l~~~~~s~D~v~~~--~~l~~~~~~~~~l~~~~--r~LkpgG~li~~~~~ 196 (282)
+.-....+|+|+.- +.- ...+.++..+. .+|+++|.++++...
T Consensus 115 ~~~~~~~~dvv~~DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 115 LAKKPTFDNVIYLDPPFFN---GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred hhccCCCceEEEECcCCCC---CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 11112247777775 322 12344444443 468999999988553
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0004 Score=63.44 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=60.7
Q ss_pred CCeEEEeCCcccchhhh---hcCCCeEEEEcCCHHHHHhCCCCC--------ceEEeecccccCCCCCCCceeEEEecch
Q 023470 98 GSEVLDLMSSWVSHLPQ---EVSYKRVVGHGLNAQELAKNPRLE--------YFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~---~~~~~~v~giD~s~~~l~~~~~~~--------~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
+.+|||++||+|..... ..+..+|+++|+++.+++.++.+. .+...|. ..+....+.||+|++.=-
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da---~~~l~~~~~fD~V~lDP~ 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDA---NALLHEERKFDVVDIDPF 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhH---HHHHhhcCCCCEEEECCC
Confidence 46899999998764433 234458999999999886544321 2344444 221111456999998521
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
..+..++..+.+.+++||.++++.
T Consensus 135 ----Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 ----GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred ----CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 345678888888899999999984
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00013 Score=59.63 Aligned_cols=96 Identities=25% Similarity=0.270 Sum_probs=51.0
Q ss_pred CCeEEEeCCcccc---hhhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccc-------cCCCCCCCceeEEEecch
Q 023470 98 GSEVLDLMSSWVS---HLPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD-------QKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 98 ~~~vLDiGcG~~~---~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~-------~~l~~~~~s~D~v~~~~~ 166 (282)
+.+|||+||+.|. .+.... +..+|+|+|+.+..-- .......+|+... ..++-..+.+|+|+|-.+
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~---~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~ 100 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL---QNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMA 100 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE---
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEeccccccc---cceeeeecccchhhHHHhhhhhccccccCcceeccccc
Confidence 4889999995443 444432 3589999999975110 1111222222111 111212368999999874
Q ss_pred hhccCC----H-------HHHHHHHHHcccCCcEEEEEEcC
Q 023470 167 VQYLQQ----P-------EKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 167 l~~~~~----~-------~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.....+ . ...+.-+...|||||.+++.+-.
T Consensus 101 ~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 101 PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp ----SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 333321 1 22556667789999999887644
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0005 Score=56.27 Aligned_cols=91 Identities=21% Similarity=0.096 Sum_probs=61.6
Q ss_pred CCCCC-eEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHh--------CCCCCceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGS-EVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAK--------NPRLEYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~-~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~--------~~~~~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
++... +++|||+|-|. .++-..+..+++.+|.+.+-++. .-.+.......+ ++ +....+||+|+
T Consensus 45 ~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~---E~-~~~~~~fd~v~ 120 (184)
T PF02527_consen 45 LPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRA---EE-PEYRESFDVVT 120 (184)
T ss_dssp S-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-H---HH-TTTTT-EEEEE
T ss_pred hccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeee---cc-cccCCCccEEE
Confidence 44444 89999998654 45555689999999999864421 112233344444 44 44568899999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+--+ .....++.-+...|++||.+++-
T Consensus 121 aRAv----~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 121 ARAV----APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp EESS----SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred eehh----cCHHHHHHHHHHhcCCCCEEEEE
Confidence 9754 47788999999999999998876
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00045 Score=64.62 Aligned_cols=100 Identities=18% Similarity=0.281 Sum_probs=60.7
Q ss_pred CCCCCeEEEeCCcccc---hhhhhc-CCCeEEEEcCCHHHHHhCC------CCCceEEeecccccCCC-CCCCceeEEE-
Q 023470 95 LRPGSEVLDLMSSWVS---HLPQEV-SYKRVVGHGLNAQELAKNP------RLEYFIVKDLNQDQKLE-FDHCSFDAVV- 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~---~~~~~~-~~~~v~giD~s~~~l~~~~------~~~~~~~~d~~~~~~l~-~~~~s~D~v~- 162 (282)
..++.+|||++||-|. +++... ....|++.|+++.-+...+ +..+..+...+. ..+. ...+.||.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~-~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDG-RVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCch-hhhhhhchhhcCeEEE
Confidence 3578999999996543 444444 3469999999987553322 122222222211 2221 2235799999
Q ss_pred ---ec--chhhccCCH----------------HHHHHHHHHcccCCcEEEEEEc
Q 023470 163 ---CA--VSVQYLQQP----------------EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ---~~--~~l~~~~~~----------------~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|+ .++..-++. .++|.++.+.|||||+|+-++-
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 55 222222111 3489999999999999988753
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=97.48 E-value=4.3e-05 Score=66.71 Aligned_cols=100 Identities=22% Similarity=0.315 Sum_probs=58.5
Q ss_pred CCCCeEEEeCC--cccchhhhhcCCCeEEEEcCCHHHHHhCCCC----------CceEEeecccc-cCCCCCCCceeEEE
Q 023470 96 RPGSEVLDLMS--SWVSHLPQEVSYKRVVGHGLNAQELAKNPRL----------EYFIVKDLNQD-QKLEFDHCSFDAVV 162 (282)
Q Consensus 96 ~~~~~vLDiGc--G~~~~~~~~~~~~~v~giD~s~~~l~~~~~~----------~~~~~~d~~~~-~~l~~~~~s~D~v~ 162 (282)
.++.+|||+-| |.....+...+..+|+++|.|+.+++.++.+ ..++..|+..- ..+. ..++||+||
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~-~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK-KGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH-HTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh-cCCCCCEEE
Confidence 36789999999 3222223333556899999999998765422 24555555211 1111 246899999
Q ss_pred ec---ch---hhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 163 CA---VS---VQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 163 ~~---~~---l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+- ++ ..-..+..+++..+.++|+|||.+++..-.
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 86 11 111124556899999999999998876443
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00042 Score=59.50 Aligned_cols=102 Identities=12% Similarity=0.122 Sum_probs=63.5
Q ss_pred hCCCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCC------------CCceEEeecccccCCCCCCC-c
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPR------------LEYFIVKDLNQDQKLEFDHC-S 157 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~------------~~~~~~~d~~~~~~l~~~~~-s 157 (282)
..+...+||=||-|.|....... +..+|+.+|+++..++.+++ +.+....|.. .-+.-..+ +
T Consensus 73 ~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~--~~l~~~~~~~ 150 (246)
T PF01564_consen 73 LHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGR--KFLKETQEEK 150 (246)
T ss_dssp HSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHH--HHHHTSSST-
T ss_pred cCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhH--HHHHhccCCc
Confidence 34467899999998775544433 35799999999998876542 1233444431 11111223 8
Q ss_pred eeEEEecchhhccCC----HHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 158 FDAVVCAVSVQYLQQ----PEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~----~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
||+|+.-..-...+. -.++++.+.+.|+|||.+++...++
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 151 YDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred ccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCc
Confidence 999998643211111 2579999999999999999886544
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00093 Score=58.35 Aligned_cols=94 Identities=17% Similarity=0.221 Sum_probs=64.7
Q ss_pred CeEEEeCCcccchhhhh---cCCCeEEEEcCCHHHHHhCCCCC------------ceEEeecccccCCCCCCCceeEEEe
Q 023470 99 SEVLDLMSSWVSHLPQE---VSYKRVVGHGLNAQELAKNPRLE------------YFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 99 ~~vLDiGcG~~~~~~~~---~~~~~v~giD~s~~~l~~~~~~~------------~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.+||-||-|.|..+... .+-.+++.+||+++.++.+++.. +..+.|.- .-+.-..++||+|++
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~--~~v~~~~~~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGV--EFLRDCEEKFDVIIV 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHH--HHHHhCCCcCCEEEE
Confidence 58999999877655443 35689999999999998776432 22333321 112222347999999
Q ss_pred cchhhccCCH------HHHHHHHHHcccCCcEEEEEEcC
Q 023470 164 AVSVQYLQQP------EKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 164 ~~~l~~~~~~------~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
-..=. . .+ ..+++.++|.|+++|.++....+
T Consensus 156 D~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 156 DSTDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred cCCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 76532 1 22 66999999999999999988444
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00056 Score=60.03 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=59.0
Q ss_pred CCCeEEEeCCccc--chhhhhcCCCeEEEEcCCHHHHHhCC------CCC---ceEEeecccccCCCCCCCceeEEEec-
Q 023470 97 PGSEVLDLMSSWV--SHLPQEVSYKRVVGHGLNAQELAKNP------RLE---YFIVKDLNQDQKLEFDHCSFDAVVCA- 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~--~~~~~~~~~~~v~giD~s~~~l~~~~------~~~---~~~~~d~~~~~~l~~~~~s~D~v~~~- 164 (282)
.+..|||+|||.| ..++...+..+|++++.|. |.+.++ ... ..+-+.+ +++.+| +..|+|++-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKi---EdieLP-Ek~DviISEP 251 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKI---EDIELP-EKVDVIISEP 251 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCcc---ccccCc-hhccEEEecc
Confidence 4567999999765 5677777889999999986 332222 211 2334444 666665 569999986
Q ss_pred --chhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 165 --VSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 165 --~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
..|-.-..++..+ .+.|.|||.|.++=++
T Consensus 252 MG~mL~NERMLEsYl-~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 252 MGYMLVNERMLESYL-HARKWLKPNGKMFPTV 282 (517)
T ss_pred chhhhhhHHHHHHHH-HHHhhcCCCCcccCcc
Confidence 2222222333333 3459999999987543
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00074 Score=57.90 Aligned_cols=92 Identities=11% Similarity=0.087 Sum_probs=59.9
Q ss_pred CCCeEEEeCCcccc---hhhhhc-CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCC-C-----CCCc
Q 023470 97 PGSEVLDLMSSWVS---HLPQEV-SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLE-F-----DHCS 157 (282)
Q Consensus 97 ~~~~vLDiGcG~~~---~~~~~~-~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~-~-----~~~s 157 (282)
+..+|||||+++|. .++... +..+|+.+|++++..+.|+. ...+..++.. +.++ + ..++
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~--e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL--PVLDQMIEDGKYHGT 156 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH--HHHHHHHhccccCCc
Confidence 45689999996554 233333 46799999999987655432 2244455442 2222 1 1368
Q ss_pred eeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
||+|+.-.- =......+..+.+.|+|||.+++.
T Consensus 157 fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 157 FDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred ccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 999998643 112345788889999999998875
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0012 Score=55.00 Aligned_cols=100 Identities=24% Similarity=0.240 Sum_probs=61.6
Q ss_pred hCCCCCeEEEeCCccc---chhhhhc-CCCeEEEEcCCHHH----HHhC--CCCCceEEeecccccCCCCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSWV---SHLPQEV-SYKRVVGHGLNAQE----LAKN--PRLEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~---~~~~~~~-~~~~v~giD~s~~~----l~~~--~~~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.+.++.+||-+|...| ++++... +...|+|++.|+.. +..+ +.+.--+..|.........--+.+|+|++
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEe
Confidence 3558899999999433 4555554 47899999999954 3333 44443456665432222212347999998
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
--+ +-.+.+-++.++...||+||.+++.+.
T Consensus 150 DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 150 DVA--QPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp E-S--STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCC--ChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 643 222334488889999999999999864
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=6.6e-05 Score=59.05 Aligned_cols=100 Identities=14% Similarity=0.168 Sum_probs=68.0
Q ss_pred CCCeEEEeCCcc----cchhhhhcCCCeEEEEcCCHHHHHhCCC----C-----CceEEe--ecccccCCCCCCCceeEE
Q 023470 97 PGSEVLDLMSSW----VSHLPQEVSYKRVVGHGLNAQELAKNPR----L-----EYFIVK--DLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 97 ~~~~vLDiGcG~----~~~~~~~~~~~~v~giD~s~~~l~~~~~----~-----~~~~~~--d~~~~~~l~~~~~s~D~v 161 (282)
.+.+||++|.|. |..++...+...|.-.|-+++.++..++ + ....+. +... .......+.||+|
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~-aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG-AQSQQEQHTFDII 107 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh-hHHHHhhCcccEE
Confidence 356799999983 3345555588899999999987743221 1 111011 1110 1112235689999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+|..++..-...+..++.|++.|+|.|..++.-|.+
T Consensus 108 laADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 108 LAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred EeccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 999988777677889999999999999988776765
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0014 Score=62.55 Aligned_cols=39 Identities=5% Similarity=0.002 Sum_probs=28.5
Q ss_pred CCCeEEEeCCcccchhhhhc---C--------CCeEEEEcCCHHHHHhCC
Q 023470 97 PGSEVLDLMSSWVSHLPQEV---S--------YKRVVGHGLNAQELAKNP 135 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~---~--------~~~v~giD~s~~~l~~~~ 135 (282)
...+|||.|||+|..+.... . ..+++|+|+++..+..++
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~ 80 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAK 80 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHH
Confidence 34689999999887664332 1 257899999998876543
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0031 Score=50.15 Aligned_cols=105 Identities=13% Similarity=0.104 Sum_probs=70.1
Q ss_pred HHHHHhhCC--CCCeEEEeCCcccchhhhhc----CCCeEEEEcCCHHHHHhC---CCCCceEEeeccccc-CC-CCCCC
Q 023470 88 TNLYRQMLR--PGSEVLDLMSSWVSHLPQEV----SYKRVVGHGLNAQELAKN---PRLEYFIVKDLNQDQ-KL-EFDHC 156 (282)
Q Consensus 88 ~~~~~~~~~--~~~~vLDiGcG~~~~~~~~~----~~~~v~giD~s~~~l~~~---~~~~~~~~~d~~~~~-~l-~~~~~ 156 (282)
.+.+.+.+. .+.-|||+|.|+|....+.. +...+++++.|++-+..- ....+++.+|..... .+ ..++.
T Consensus 37 A~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq 116 (194)
T COG3963 37 ARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQ 116 (194)
T ss_pred HHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCC
Confidence 334444443 35689999999986544332 567999999999866432 222345555542211 12 24567
Q ss_pred ceeEEEecchhhccCCH--HHHHHHHHHcccCCcEEEE
Q 023470 157 SFDAVVCAVSVQYLQQP--EKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 157 s~D~v~~~~~l~~~~~~--~~~l~~~~r~LkpgG~li~ 192 (282)
-||.|+|..=+-.++-. -+.++.+...|.+||.++-
T Consensus 117 ~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 117 FFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred eeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 79999999776666533 3489999999999999874
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0014 Score=54.06 Aligned_cols=97 Identities=20% Similarity=0.198 Sum_probs=64.0
Q ss_pred CCCCeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHHHhCCC-----CCceEEeecccccCC-CCCCCceeEEEecchh
Q 023470 96 RPGSEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQELAKNPR-----LEYFIVKDLNQDQKL-EFDHCSFDAVVCAVSV 167 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l~~~~~-----~~~~~~~d~~~~~~l-~~~~~s~D~v~~~~~l 167 (282)
.++.+||.||-|.|- ...+..+-.+=+-|+..++.+++-+. ..+.++....=...+ .++|++||.|+---.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 478999999998653 33344444455667888876655432 222322221000111 2568899999987666
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEE
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
++-.|...+.+.+.|+|||+|.+-+
T Consensus 180 e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 180 ELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred hHHHHHHHHHHHHhhhcCCCceEEE
Confidence 7888888999999999999998743
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00021 Score=59.56 Aligned_cols=96 Identities=22% Similarity=0.153 Sum_probs=46.8
Q ss_pred CCCCCeEEEeCCcccchhhhh---cCCCeEEEEcCCHHHHHhCC---------------CCC--ceEEeecccccCCCCC
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE---VSYKRVVGHGLNAQELAKNP---------------RLE--YFIVKDLNQDQKLEFD 154 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~---~~~~~v~giD~s~~~l~~~~---------------~~~--~~~~~d~~~~~~l~~~ 154 (282)
+.++..++|||||.|...... .+..+.+||++.+...+.+. ... .+..+|+.........
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 557889999999998754332 25667999999985432221 111 2233333110000000
Q ss_pred CCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEE
Q 023470 155 HCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 155 ~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 191 (282)
-...|+|+++.... -++....|.++..-||+|-+++
T Consensus 120 ~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 120 WSDADVVFVNNTCF-DPDLNLALAELLLELKPGARII 155 (205)
T ss_dssp GHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEE
T ss_pred hcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEE
Confidence 03468999987642 2345567788888999987765
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00047 Score=62.44 Aligned_cols=51 Identities=8% Similarity=0.143 Sum_probs=33.6
Q ss_pred HHHHHHHHhhCC-CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCC
Q 023470 85 STLTNLYRQMLR-PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNP 135 (282)
Q Consensus 85 ~~~~~~~~~~~~-~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~ 135 (282)
..+...+.+.+. .+.+|||+|||+|....... ...+|+|+|++++|++.++
T Consensus 184 ~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~ 236 (353)
T TIGR02143 184 IKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ 236 (353)
T ss_pred HHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH
Confidence 344444444443 23479999999885433222 4468999999999997655
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00059 Score=62.01 Aligned_cols=108 Identities=9% Similarity=0.090 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhCCC-CCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccc-cCC
Q 023470 83 FISTLTNLYRQMLRP-GSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQD-QKL 151 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~-~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~-~~l 151 (282)
..+.+.+.+.+.+.. +.+|||++||+|....... ...+|+|+|+|+.+++.++.+ ..+...|+... ..+
T Consensus 191 ~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~ 270 (362)
T PRK05031 191 VNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAM 270 (362)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH
Confidence 344455555554432 3579999999885433222 456899999999999765432 23555555211 011
Q ss_pred CC------------CCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 152 EF------------DHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 152 ~~------------~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.- ....||+|+.-== . ..-.+.+++.+. +|++.++++..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~D~v~lDPP-R-~G~~~~~l~~l~---~~~~ivyvSC~ 321 (362)
T PRK05031 271 NGVREFNRLKGIDLKSYNFSTIFVDPP-R-AGLDDETLKLVQ---AYERILYISCN 321 (362)
T ss_pred hhcccccccccccccCCCCCEEEECCC-C-CCCcHHHHHHHH---ccCCEEEEEeC
Confidence 00 0125899888310 0 001123444443 47888888864
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00014 Score=59.51 Aligned_cols=114 Identities=19% Similarity=0.145 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCCC---------CceEEeecccc-c
Q 023470 82 GFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQD-Q 149 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~-~ 149 (282)
...+.+.+++....-++.+|||+-||+|..-.... +..+|+.+|.+++.+...+++ ......|.... .
T Consensus 27 rvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~ 106 (183)
T PF03602_consen 27 RVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLL 106 (183)
T ss_dssp HHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHH
T ss_pred HHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHH
Confidence 45566666666542368899999999987544332 667999999999876543321 12333342110 1
Q ss_pred CCCCCCCceeEEEec--chhhccCCHHHHHHHHH--HcccCCcEEEEEEcCc
Q 023470 150 KLEFDHCSFDAVVCA--VSVQYLQQPEKVFAEVF--RVLKPGGVFIVSFSNR 197 (282)
Q Consensus 150 ~l~~~~~s~D~v~~~--~~l~~~~~~~~~l~~~~--r~LkpgG~li~~~~~~ 197 (282)
.+.....+||+|++- +..... ...++..+. .+|+++|.++++....
T Consensus 107 ~~~~~~~~fDiIflDPPY~~~~~--~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 107 KLAKKGEKFDIIFLDPPYAKGLY--YEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHCTS-EEEEEE--STTSCHH--HHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred hhcccCCCceEEEECCCcccchH--HHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 121246789999986 221110 256777776 7899999999997654
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0029 Score=51.81 Aligned_cols=98 Identities=20% Similarity=0.222 Sum_probs=64.2
Q ss_pred CCCCCeEEEeCC--cc-cchhhhhcCCCeEEEEcCCHHHH----HhCC--CCCceEEeecccccCCCCCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMS--SW-VSHLPQEVSYKRVVGHGLNAQEL----AKNP--RLEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGc--G~-~~~~~~~~~~~~v~giD~s~~~l----~~~~--~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
+.++.+||=+|+ || .++.+...+...++|++.|+.+. ..+. .+.--+..|....+....--+.+|+|+.--
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV 153 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDV 153 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEec
Confidence 457899999999 64 35777766778999999998754 3333 333335566533222111124588888743
Q ss_pred hhhccCCH-HHHHHHHHHcccCCcEEEEEEc
Q 023470 166 SVQYLQQP-EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 166 ~l~~~~~~-~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+ -++. +-+..++...||+||.+++++-
T Consensus 154 A---Qp~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 154 A---QPNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred C---CchHHHHHHHHHHHhcccCCeEEEEEE
Confidence 2 1222 2378899999999999888754
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0071 Score=54.82 Aligned_cols=100 Identities=24% Similarity=0.367 Sum_probs=58.9
Q ss_pred CCCCeEEEeCCcc---cchhhhhcC--CCeEEEEcCCHHHHHhCC------CCC--ceEEeecccccCCCCCCCceeEEE
Q 023470 96 RPGSEVLDLMSSW---VSHLPQEVS--YKRVVGHGLNAQELAKNP------RLE--YFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 96 ~~~~~vLDiGcG~---~~~~~~~~~--~~~v~giD~s~~~l~~~~------~~~--~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
.++.+|||++++- ..++++.+. +..|+++|+|+.-+..-+ +.. .....|...........+.||.|+
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iL 234 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRIL 234 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEE
Confidence 4789999998843 345555553 466799999986443211 111 223333211011222223599998
Q ss_pred ec------chhhccCC----------------HHHHHHHHHHcccCCcEEEEEEc
Q 023470 163 CA------VSVQYLQQ----------------PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~------~~l~~~~~----------------~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.- .+++--++ ..++|..+.++|||||.|+.++-
T Consensus 235 lDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 235 LDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred ECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 75 33321111 12389999999999999998854
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0016 Score=55.36 Aligned_cols=109 Identities=14% Similarity=0.092 Sum_probs=59.9
Q ss_pred HHHHHHHHhhCCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhC-------CCCCceEEeecccccCCCCC
Q 023470 85 STLTNLYRQMLRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKN-------PRLEYFIVKDLNQDQKLEFD 154 (282)
Q Consensus 85 ~~~~~~~~~~~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~-------~~~~~~~~~d~~~~~~l~~~ 154 (282)
+.+.+.+...+++..+|+|||||.--.. ....+...++|+||+..+++.- .-.....+.|+. . ..+
T Consensus 93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~---~-~~~ 168 (251)
T PF07091_consen 93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLL---S-DPP 168 (251)
T ss_dssp HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TT---T-SHT
T ss_pred HHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeee---c-cCC
Confidence 3344444455667889999999953222 2223567999999999887532 223355666653 1 224
Q ss_pred CCceeEEEecchhhccCCHHH--HHHHHHHcccCCcEEEEEEcCchh
Q 023470 155 HCSFDAVVCAVSVQYLQQPEK--VFAEVFRVLKPGGVFIVSFSNRMF 199 (282)
Q Consensus 155 ~~s~D~v~~~~~l~~~~~~~~--~l~~~~r~LkpgG~li~~~~~~~~ 199 (282)
....|+.+..=+++.+..... .++-+-.+ . .=.+++++|-+..
T Consensus 169 ~~~~DlaLllK~lp~le~q~~g~g~~ll~~~-~-~~~~vVSfPtrSL 213 (251)
T PF07091_consen 169 KEPADLALLLKTLPCLERQRRGAGLELLDAL-R-SPHVVVSFPTRSL 213 (251)
T ss_dssp TSEESEEEEET-HHHHHHHSTTHHHHHHHHS-C-ESEEEEEEES---
T ss_pred CCCcchhhHHHHHHHHHHHhcchHHHHHHHh-C-CCeEEEecccccc
Confidence 578999999988887743322 23223332 2 3367888886544
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00029 Score=55.48 Aligned_cols=97 Identities=22% Similarity=0.321 Sum_probs=60.4
Q ss_pred CCeEEEeCCc--ccchhhhhcCCCeEEEEcCCHHHHHh-CCC-CCceEEeecccccCCCCCCCceeEEEecchhhccC--
Q 023470 98 GSEVLDLMSS--WVSHLPQEVSYKRVVGHGLNAQELAK-NPR-LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ-- 171 (282)
Q Consensus 98 ~~~vLDiGcG--~~~~~~~~~~~~~v~giD~s~~~l~~-~~~-~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~-- 171 (282)
+.+++=+|+. |....+-..+..+|.-++.++--+.. .+. ...+...++. .++.-..++||.+.|..+++|+.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi~p~df~--~~~~~y~~~fD~~as~~siEh~GLG 79 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSILPVDFA--KNWQKYAGSFDFAASFSSIEHFGLG 79 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccccccHHHHH--HHHHHhhccchhhheechhcccccc
Confidence 4567777875 44444444466778888876522211 111 1111112221 12222347899999999999983
Q ss_pred ---CH------HHHHHHHHHcccCCcEEEEEEcC
Q 023470 172 ---QP------EKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 172 ---~~------~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
|| ...+.++.++|||||.|++.+|-
T Consensus 80 RYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPv 113 (177)
T PF03269_consen 80 RYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPV 113 (177)
T ss_pred ccCCCCCccccHHHHHHHHHhhccCCeEEEEeec
Confidence 22 34889999999999999999884
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0057 Score=51.16 Aligned_cols=94 Identities=18% Similarity=0.253 Sum_probs=59.3
Q ss_pred CCCeEEEeCC--cccchh-hhhc-CCCeEEEEcCCHHHHHhCC---------CCCceEEeecccc-cC-C-CCCCCceeE
Q 023470 97 PGSEVLDLMS--SWVSHL-PQEV-SYKRVVGHGLNAQELAKNP---------RLEYFIVKDLNQD-QK-L-EFDHCSFDA 160 (282)
Q Consensus 97 ~~~~vLDiGc--G~~~~~-~~~~-~~~~v~giD~s~~~l~~~~---------~~~~~~~~d~~~~-~~-l-~~~~~s~D~ 160 (282)
...++||||. |.+... +... ...+|+++|+++...+... ....++++..... .+ + ..+.++||.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 5678999998 643322 2222 5789999999987654432 2234555544321 11 1 135688999
Q ss_pred EEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 161 VVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 161 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
++.-. +=.+-.....++.++||+||.+++.
T Consensus 153 aFvDa---dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 153 AFVDA---DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEcc---chHHHHHHHHHHHhhcccccEEEEe
Confidence 98742 1112235788999999999999986
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.004 Score=54.34 Aligned_cols=112 Identities=15% Similarity=0.142 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHhhCCC------CCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHH-------hCCCCC-----ceE-
Q 023470 82 GFISTLTNLYRQMLRP------GSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELA-------KNPRLE-----YFI- 141 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~------~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~-------~~~~~~-----~~~- 141 (282)
..+..+.+.+....++ ..+||--|||.|+...... .+..+.|=+.|--|+- .++... .|+
T Consensus 129 ~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh 208 (369)
T KOG2798|consen 129 QLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIH 208 (369)
T ss_pred hhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeee
Confidence 3455566666666554 5679999999987654433 5567777788876651 111100 000
Q ss_pred -----------------------------------EeecccccCCCCCCCceeEEEecchhhccCCHHHHHHHHHHcccC
Q 023470 142 -----------------------------------VKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKP 186 (282)
Q Consensus 142 -----------------------------------~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~Lkp 186 (282)
.+|+..-...+-..++||+|+.++.|....+.-+.++.|..+|||
T Consensus 209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~ 288 (369)
T KOG2798|consen 209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKP 288 (369)
T ss_pred ccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccC
Confidence 011100000111124799999999998888999999999999999
Q ss_pred CcEEEEE
Q 023470 187 GGVFIVS 193 (282)
Q Consensus 187 gG~li~~ 193 (282)
||..+-.
T Consensus 289 GGvWiNl 295 (369)
T KOG2798|consen 289 GGVWINL 295 (369)
T ss_pred CcEEEec
Confidence 9998744
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0035 Score=54.41 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=52.3
Q ss_pred CeEEEeCCcc----cchhhhh-cCCCeEEEEcCCHHHHHhCCC----------CCceEEeecccccCCCCCCCceeEEEe
Q 023470 99 SEVLDLMSSW----VSHLPQE-VSYKRVVGHGLNAQELAKNPR----------LEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 99 ~~vLDiGcG~----~~~~~~~-~~~~~v~giD~s~~~l~~~~~----------~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.+|+=||||- .-.++.. ..+..|+++|+++++++.+++ ...+...|. .+.+..-..||+|+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~---~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADV---LDVTYDLKEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-G---GGG-GG----SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecch---hccccccccCCEEEE
Confidence 5899999992 3334432 256789999999988765532 224555565 334433467998887
Q ss_pred cchhh-ccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 164 AVSVQ-YLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 164 ~~~l~-~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
..... --.+..+++.++.+.++||+.+++-..
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 75433 223778899999999999999887644
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0026 Score=55.97 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=45.4
Q ss_pred CCCCeEEEeCCcccchhh---hhc-CCCeEEEEcCCHHHHHhCCCC------CceEEeeccccc-CCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSHLP---QEV-SYKRVVGHGLNAQELAKNPRL------EYFIVKDLNQDQ-KLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~---~~~-~~~~v~giD~s~~~l~~~~~~------~~~~~~d~~~~~-~l~~~~~s~D~v~~~ 164 (282)
.++..+||.+||.|.+.. ... +..+|+|+|.++.|++.++.. ..++..++.... .++-.-.++|+|++.
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGILLD 97 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEEEC
Confidence 467899999999876543 333 258999999999999766532 234444442110 111111279999998
Q ss_pred chh
Q 023470 165 VSV 167 (282)
Q Consensus 165 ~~l 167 (282)
..+
T Consensus 98 LGv 100 (296)
T PRK00050 98 LGV 100 (296)
T ss_pred CCc
Confidence 654
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0058 Score=60.40 Aligned_cols=78 Identities=12% Similarity=0.084 Sum_probs=48.1
Q ss_pred eEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCC--CCCceeEEEec--chhhcc--CCHHHHHHH---HH
Q 023470 120 RVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEF--DHCSFDAVVCA--VSVQYL--QQPEKVFAE---VF 181 (282)
Q Consensus 120 ~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~--~~~s~D~v~~~--~~l~~~--~~~~~~l~~---~~ 181 (282)
+++|+|+++++++.++.+ ..+..+|+ .+++. ..+++|+|+++ +.-..- .+...+.++ ..
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~---~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~l 334 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDV---ADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRL 334 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCCh---hhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHH
Confidence 699999999999766532 23556666 44443 33579999999 332222 123334333 44
Q ss_pred HcccCCcEEEEEEcCchhH
Q 023470 182 RVLKPGGVFIVSFSNRMFY 200 (282)
Q Consensus 182 r~LkpgG~li~~~~~~~~~ 200 (282)
+...+|+.+++.+++..+.
T Consensus 335 k~~~~g~~~~llt~~~~l~ 353 (702)
T PRK11783 335 KQQFGGWNAALFSSSPELL 353 (702)
T ss_pred HHhCCCCeEEEEeCCHHHH
Confidence 4445999998877765443
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0055 Score=55.81 Aligned_cols=90 Identities=11% Similarity=0.141 Sum_probs=60.1
Q ss_pred CeEEEeCCcccchhhhhc----CCCeEEEEcCCHHHHHhCCCCC--------ceEEeecccccCCCCCCCceeEEEecch
Q 023470 99 SEVLDLMSSWVSHLPQEV----SYKRVVGHGLNAQELAKNPRLE--------YFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 99 ~~vLDiGcG~~~~~~~~~----~~~~v~giD~s~~~l~~~~~~~--------~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
.+|||+.||+|..-.+.. +..+|+++|+++++++..+.+. .+...|.. .-+......||+|..-=
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~--~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAA--NVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHH--HHHHHhCCCCCEEEeCC-
Confidence 689999999876543322 3468999999998875443221 23333331 11221235699998753
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
. ..+..++..+.+.+++||.++++.
T Consensus 123 f---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 F---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 1 355679999999999999999983
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0014 Score=48.46 Aligned_cols=39 Identities=21% Similarity=0.728 Sum_probs=30.0
Q ss_pred ceeEEEecchhhccC------CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 157 SFDAVVCAVSVQYLQ------QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 157 s~D~v~~~~~l~~~~------~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.||+|+|..+.-|+. ....+++.+++.|+|||.|+++..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 489999998877663 334599999999999999999943
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0053 Score=56.96 Aligned_cols=91 Identities=14% Similarity=0.143 Sum_probs=61.6
Q ss_pred eEEEeCCcccchhhhhcCCCeEEEEcCCHH----H--HHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccC--
Q 023470 100 EVLDLMSSWVSHLPQEVSYKRVVGHGLNAQ----E--LAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ-- 171 (282)
Q Consensus 100 ~vLDiGcG~~~~~~~~~~~~~v~giD~s~~----~--l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~-- 171 (282)
.|+|+..|.|.+.++.... .|.....-+. - +-..++.......-. +.++.-+.+||+|.+..++.+..
T Consensus 368 NVMDMnAg~GGFAAAL~~~-~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWC---E~fsTYPRTYDLlHA~~lfs~~~~r 443 (506)
T PF03141_consen 368 NVMDMNAGYGGFAAALIDD-PVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWC---EAFSTYPRTYDLLHADGLFSLYKDR 443 (506)
T ss_pred eeeeecccccHHHHHhccC-CceEEEecccCCCCcchhhhhcccchhccchh---hccCCCCcchhheehhhhhhhhccc
Confidence 5999999998877776522 2333333322 1 112233332222223 66776679999999998887765
Q ss_pred -CHHHHHHHHHHcccCCcEEEEEE
Q 023470 172 -QPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 172 -~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
+.+.++-|+-|+|+|||.++|-.
T Consensus 444 C~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 444 CEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred ccHHHHHHHhHhhcCCCceEEEec
Confidence 56779999999999999999874
|
; GO: 0008168 methyltransferase activity |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.034 Score=50.68 Aligned_cols=47 Identities=23% Similarity=0.293 Sum_probs=36.2
Q ss_pred CCCCCCceeEEEecchhhccCCH--------------------------------------HHHHHHHHHcccCCcEEEE
Q 023470 151 LEFDHCSFDAVVCAVSVQYLQQP--------------------------------------EKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 151 l~~~~~s~D~v~~~~~l~~~~~~--------------------------------------~~~l~~~~r~LkpgG~li~ 192 (282)
--||.+|.++++|++++||+... ..+|+.-++-|.|||++++
T Consensus 156 RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl 235 (386)
T PLN02668 156 RLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFL 235 (386)
T ss_pred cccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEE
Confidence 34788999999999999999521 1244555667899999999
Q ss_pred EEcCc
Q 023470 193 SFSNR 197 (282)
Q Consensus 193 ~~~~~ 197 (282)
++.++
T Consensus 236 ~~~Gr 240 (386)
T PLN02668 236 VCLGR 240 (386)
T ss_pred EEecC
Confidence 98765
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.015 Score=48.74 Aligned_cols=88 Identities=16% Similarity=0.129 Sum_probs=58.0
Q ss_pred CCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHH---hC-----CCCCceEEeecccccCCCCCCCceeEEEecch
Q 023470 98 GSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELA---KN-----PRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 98 ~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~---~~-----~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
+.+++|||+|-|. .++-..+..+|+-+|...+-+. .. -.+..+....+ +++.-....||+|+|-.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~Ra---E~~~~~~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRA---EEFGQEKKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhH---hhcccccccCcEEEeehc
Confidence 5799999998653 4444458888999999875332 11 12233444444 444321111999999643
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
.+...++.-+...+|+||.+++
T Consensus 145 ----a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 145 ----ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ----cchHHHHHHHHHhcccCCcchh
Confidence 4667788889999999998764
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0066 Score=52.16 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=46.2
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCCCC-ceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFDHC-SFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~~~-s~D~v~~~ 164 (282)
+.++..|||||+|.|....... .+.+|+++++++.+++.-++ +...+.+|+ ...+++.- .++.|+++
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~Da---Lk~d~~~l~~~~~vVaN 102 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDA---LKFDFPSLAQPYKVVAN 102 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCch---hcCcchhhcCCCEEEEc
Confidence 3457899999999987655443 67789999999998864332 234566676 55555432 46778877
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.021 Score=50.88 Aligned_cols=88 Identities=17% Similarity=0.088 Sum_probs=54.5
Q ss_pred CCCCeEEEeCCcc---cchhhhhcCCCeEEEEcCCHHHHHhCCC--CCceEEeecccccCCCCCCCceeEEEecchhhcc
Q 023470 96 RPGSEVLDLMSSW---VSHLPQEVSYKRVVGHGLNAQELAKNPR--LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 96 ~~~~~vLDiGcG~---~~~~~~~~~~~~v~giD~s~~~l~~~~~--~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~ 170 (282)
.++.++|||||+. ...+.. .+.+|+|||.++ |-..-.. .......+.. ...| +.+.+|+++|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~--rG~~V~AVD~g~-l~~~L~~~~~V~h~~~d~f--r~~p-~~~~vDwvVcDmv---- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVR--RGMFVTAVDNGP-MAQSLMDTGQVEHLRADGF--KFRP-PRKNVDWLVCDMV---- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHH--cCCEEEEEechh-cCHhhhCCCCEEEEeccCc--ccCC-CCCCCCEEEEecc----
Confidence 5788999999944 444444 567999999665 2221122 2222222221 2222 1567999999765
Q ss_pred CCHHHHHHHHHHcccCC--cEEEEE
Q 023470 171 QQPEKVFAEVFRVLKPG--GVFIVS 193 (282)
Q Consensus 171 ~~~~~~l~~~~r~Lkpg--G~li~~ 193 (282)
..|..+.+-+.++|..| ...|++
T Consensus 280 e~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 280 EKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred cCHHHHHHHHHHHHhcCcccEEEEE
Confidence 36778888888888776 345655
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0055 Score=52.50 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=47.0
Q ss_pred hCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhC----CC-----CCceEEeecccccCCCCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKN----PR-----LEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~----~~-----~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.+++...|||+|.|+|....... .+.+|+++++++.|++.- ++ .-....+|. ...++ -.||++|+
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~---lK~d~--P~fd~cVs 129 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDF---LKTDL--PRFDGCVS 129 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccc---ccCCC--cccceeec
Confidence 46788999999999997654433 678999999999998532 11 124566776 33333 36899998
Q ss_pred c
Q 023470 164 A 164 (282)
Q Consensus 164 ~ 164 (282)
+
T Consensus 130 N 130 (315)
T KOG0820|consen 130 N 130 (315)
T ss_pred c
Confidence 5
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.015 Score=52.00 Aligned_cols=98 Identities=13% Similarity=0.178 Sum_probs=66.6
Q ss_pred HHHHhhCCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCc
Q 023470 89 NLYRQMLRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCS 157 (282)
Q Consensus 89 ~~~~~~~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s 157 (282)
..+.+...+|.+|||+=||.|.+.... .+...|+++|+++.+++..++ ....+.+|. ......-+.
T Consensus 180 ~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~---rev~~~~~~ 256 (341)
T COG2520 180 ARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA---REVAPELGV 256 (341)
T ss_pred HHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccH---HHhhhcccc
Confidence 345556667999999999988654332 234459999999987643221 123455565 444433378
Q ss_pred eeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+|-|++... .+-..++..+.+.+|+||.+-+-
T Consensus 257 aDrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 257 ADRIIMGLP----KSAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred CCEEEeCCC----CcchhhHHHHHHHhhcCcEEEEE
Confidence 999999754 24456888899999999998765
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.03 Score=45.43 Aligned_cols=96 Identities=22% Similarity=0.320 Sum_probs=55.7
Q ss_pred hCCCCCeEEEeCC--c-ccchhhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEe-ecccc-------cCCCCCCCceeEE
Q 023470 94 MLRPGSEVLDLMS--S-WVSHLPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVK-DLNQD-------QKLEFDHCSFDAV 161 (282)
Q Consensus 94 ~~~~~~~vLDiGc--G-~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~-d~~~~-------~~l~~~~~s~D~v 161 (282)
.+.|+.+|||+|| | |.....+.. +...|.|+|+-.-.- -.+ ...+.+ |+.+. +. +++..+|+|
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p--~~G-a~~i~~~dvtdp~~~~ki~e~--lp~r~VdvV 140 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP--PEG-ATIIQGNDVTDPETYRKIFEA--LPNRPVDVV 140 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC--CCC-cccccccccCCHHHHHHHHHh--CCCCcccEE
Confidence 4678999999999 4 333333322 788999999864110 001 112222 33322 22 357889999
Q ss_pred Eecchhhcc----CCHHH-------HHHHHHHcccCCcEEEEEE
Q 023470 162 VCAVSVQYL----QQPEK-------VFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 162 ~~~~~l~~~----~~~~~-------~l~~~~r~LkpgG~li~~~ 194 (282)
+|-..-... .|... ++.-....++|+|.++..+
T Consensus 141 lSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 141 LSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred EeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 998643222 12222 3444456678999999875
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.016 Score=47.24 Aligned_cols=112 Identities=20% Similarity=0.148 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCC
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKL 151 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l 151 (282)
..+.+.+++...--.+.++||+-+|+|..-.... +..+++.+|.+.+.+...++ .......|.. .-+
T Consensus 29 VREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~--~~L 106 (187)
T COG0742 29 VREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL--RAL 106 (187)
T ss_pred HHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH--HHH
Confidence 4444555544421267899999999876544433 67899999999987643322 2233344432 111
Q ss_pred C-CC-CCceeEEEec--chhhccCCHHHHHHH--HHHcccCCcEEEEEEcCc
Q 023470 152 E-FD-HCSFDAVVCA--VSVQYLQQPEKVFAE--VFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 152 ~-~~-~~s~D~v~~~--~~l~~~~~~~~~l~~--~~r~LkpgG~li~~~~~~ 197 (282)
. .. .+.||+|+.- +.- -+-+....+.. -..+|+|+|.++++....
T Consensus 107 ~~~~~~~~FDlVflDPPy~~-~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 107 KQLGTREPFDLVFLDPPYAK-GLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HhcCCCCcccEEEeCCCCcc-chhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 1 11 2259999986 321 11122333333 567899999999996644
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.01 Score=48.41 Aligned_cols=102 Identities=14% Similarity=0.051 Sum_probs=61.6
Q ss_pred CCCeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHHHhCCCCC---ceEEeecccccCCCCCCCceeEEEecchhhccC
Q 023470 97 PGSEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQELAKNPRLE---YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 97 ~~~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l~~~~~~~---~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~ 171 (282)
.+.+|||+|+|.|. ..+...+...|++.|+.+..+...+-+. .+.+.... .++-.++..||+++...++..-+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~--~d~~g~~~~~Dl~LagDlfy~~~ 156 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTH--ADLIGSPPAFDLLLAGDLFYNHT 156 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEee--ccccCCCcceeEEEeeceecCch
Confidence 57899999998764 2333347789999999987654332221 11111111 22223677899999998765544
Q ss_pred CHHHHHHHHHHcccCCcE-EEEEEcCchhHH
Q 023470 172 QPEKVFAEVFRVLKPGGV-FIVSFSNRMFYE 201 (282)
Q Consensus 172 ~~~~~l~~~~r~LkpgG~-li~~~~~~~~~~ 201 (282)
--.+++. +.+.|+..|. +++-.|++....
T Consensus 157 ~a~~l~~-~~~~l~~~g~~vlvgdp~R~~lp 186 (218)
T COG3897 157 EADRLIP-WKDRLAEAGAAVLVGDPGRAYLP 186 (218)
T ss_pred HHHHHHH-HHHHHHhCCCEEEEeCCCCCCCc
Confidence 5555777 5555555554 555567664433
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.035 Score=51.54 Aligned_cols=112 Identities=21% Similarity=0.255 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhhCC--CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCC
Q 023470 83 FISTLTNLYRQMLR--PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKL 151 (282)
Q Consensus 83 ~~~~~~~~~~~~~~--~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l 151 (282)
..+.+.....+.+. ++.++||+=||.|.+-.... ...+|+|+|+++++++.++.+ ..+..++. +.+
T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~a---e~~ 353 (432)
T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDA---EEF 353 (432)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCH---HHH
Confidence 34444444444444 56789999999776544433 788999999999999765432 24444444 333
Q ss_pred CC---CCCceeEEEecchhhccCCHH------HHHHHHHHcccCCcEEEEEEcCchhHHHHHHhh
Q 023470 152 EF---DHCSFDAVVCAVSVQYLQQPE------KVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAW 207 (282)
Q Consensus 152 ~~---~~~s~D~v~~~~~l~~~~~~~------~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~ 207 (282)
.. ....+|+|+. ||+ .+++.+.+ ++|-.++++++ |+.........+
T Consensus 354 ~~~~~~~~~~d~Vvv--------DPPR~G~~~~~lk~l~~-~~p~~IvYVSC-NP~TlaRDl~~L 408 (432)
T COG2265 354 TPAWWEGYKPDVVVV--------DPPRAGADREVLKQLAK-LKPKRIVYVSC-NPATLARDLAIL 408 (432)
T ss_pred hhhccccCCCCEEEE--------CCCCCCCCHHHHHHHHh-cCCCcEEEEeC-CHHHHHHHHHHH
Confidence 21 2346899988 443 34554444 57788889985 454444443333
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.047 Score=45.29 Aligned_cols=133 Identities=10% Similarity=0.073 Sum_probs=58.8
Q ss_pred CCCeEEEeCC--c-ccchhh---hhc-CCCeEEEEcCCHHHH-----Hh--CCCCCceEEeeccccc---CCC-CC-CCc
Q 023470 97 PGSEVLDLMS--S-WVSHLP---QEV-SYKRVVGHGLNAQEL-----AK--NPRLEYFIVKDLNQDQ---KLE-FD-HCS 157 (282)
Q Consensus 97 ~~~~vLDiGc--G-~~~~~~---~~~-~~~~v~giD~s~~~l-----~~--~~~~~~~~~~d~~~~~---~l~-~~-~~s 157 (282)
+...|+|+|. | .....+ ... +.++|+|+|+..... +. ......+++++....+ .+. .. ...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 5678999999 3 222222 223 678999999954322 22 1144567777775431 111 11 112
Q ss_pred eeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHHHH---HHhhhcCCCCcchhhHHHHHHhhCCCCch
Q 023470 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKA---ISAWRDGTAYGRVQLVVQYFQCVEGYTNP 232 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~gF~~~ 232 (282)
- ++++-.+-|.-.+....|+....++++|+++++........... -..|.. +......+.+|+.....|...
T Consensus 112 ~-vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~--g~~p~~av~~fL~~~~~f~iD 186 (206)
T PF04989_consen 112 P-VLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGP--GNNPKTAVKEFLAEHPDFEID 186 (206)
T ss_dssp S-EEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS---------------HHHHHHHHHTTTTEEEE
T ss_pred c-eEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhh--hhHHHHHHHHHHHHCCCcEec
Confidence 2 34444554444577888999999999999999875432221111 123432 222335566777765556543
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.028 Score=50.19 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=61.3
Q ss_pred hhCCCCCeEEEeCCc-ccch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 93 QMLRPGSEVLDLMSS-WVSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG-~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
..+.|+.+|+=+|+| .|.. ++.. -+.+|+++|.|++-++.+++...-.+.+........--.+.+|+|+..-.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka-~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-- 238 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKA-MGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-- 238 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHH-cCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC--
Confidence 346688999999997 3322 2332 34999999999998887776642222222111122111123999988654
Q ss_pred ccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 169 YLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
...+....+.||+||.+++.
T Consensus 239 -----~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 239 -----PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred -----hhhHHHHHHHHhcCCEEEEE
Confidence 56788999999999999876
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.012 Score=51.72 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=32.5
Q ss_pred CCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhCCC-------CC-ceEEeecccc----cCCCCCCCceeEEE
Q 023470 98 GSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKNPR-------LE-YFIVKDLNQD----QKLEFDHCSFDAVV 162 (282)
Q Consensus 98 ~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~~~-------~~-~~~~~d~~~~----~~l~~~~~s~D~v~ 162 (282)
..++||||||... .+.....+++++|+|+++..++.|+. .. ...+...... ..+..+++.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 4679999999533 23333358999999999988765432 22 1222222111 12223446899999
Q ss_pred ecch
Q 023470 163 CAVS 166 (282)
Q Consensus 163 ~~~~ 166 (282)
|+==
T Consensus 183 CNPP 186 (299)
T PF05971_consen 183 CNPP 186 (299)
T ss_dssp E---
T ss_pred cCCc
Confidence 9843
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.044 Score=46.21 Aligned_cols=105 Identities=21% Similarity=0.188 Sum_probs=64.4
Q ss_pred HHHHHHHhh--CCCCCeEEEeCCcccchhh--hhcCCCeEEEEcCCHHHHHhC-CCCCceEEeecccccCC---CCCCCc
Q 023470 86 TLTNLYRQM--LRPGSEVLDLMSSWVSHLP--QEVSYKRVVGHGLNAQELAKN-PRLEYFIVKDLNQDQKL---EFDHCS 157 (282)
Q Consensus 86 ~~~~~~~~~--~~~~~~vLDiGcG~~~~~~--~~~~~~~v~giD~s~~~l~~~-~~~~~~~~~d~~~~~~l---~~~~~s 157 (282)
.+...+..+ ..++..+||+|+-+|.+.. .+.+...|+|+|..-.++... +.....++..-++...+ .+. +.
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~ 144 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EK 144 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cC
Confidence 344444443 3467889999996655433 333678999999998776432 22222222221111222 122 35
Q ss_pred eeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
.|+++|--++. ....+|-.+..+|+|+|.++.-+
T Consensus 145 ~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 145 PDLIVIDVSFI---SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred CCeEEEEeehh---hHHHHHHHHHHhcCCCceEEEEe
Confidence 78888876543 44789999999999999987654
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.059 Score=48.44 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=31.1
Q ss_pred CCCCCCCceeEEEecchhhccCCH------------------------H---------------HHHHHHHHcccCCcEE
Q 023470 150 KLEFDHCSFDAVVCAVSVQYLQQP------------------------E---------------KVFAEVFRVLKPGGVF 190 (282)
Q Consensus 150 ~l~~~~~s~D~v~~~~~l~~~~~~------------------------~---------------~~l~~~~r~LkpgG~l 190 (282)
.--+|++|.|+++|++++||+... + .+|+.-++=|+|||++
T Consensus 100 ~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~m 179 (334)
T PF03492_consen 100 GRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPGGRM 179 (334)
T ss_dssp S--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred hccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccCcEE
Confidence 334789999999999999999421 1 1455556678999999
Q ss_pred EEEEcCc
Q 023470 191 IVSFSNR 197 (282)
Q Consensus 191 i~~~~~~ 197 (282)
++.+.++
T Consensus 180 vl~~~gr 186 (334)
T PF03492_consen 180 VLTFLGR 186 (334)
T ss_dssp EEEEEE-
T ss_pred EEEEeec
Confidence 9987654
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.046 Score=44.98 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=25.0
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHH
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQ 129 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~ 129 (282)
+...+.|||||.|..+ +.+++..-+.|++|-.+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~K 95 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDK 95 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHH
Confidence 4567999999987654 44558889999998753
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.029 Score=43.57 Aligned_cols=70 Identities=23% Similarity=0.508 Sum_probs=41.4
Q ss_pred eEEEEcCCHHHHHhCCCC------C-c-eEEeecccccCCC--CCCCceeEEEecchhhccC--------CHH---HHHH
Q 023470 120 RVVGHGLNAQELAKNPRL------E-Y-FIVKDLNQDQKLE--FDHCSFDAVVCAVSVQYLQ--------QPE---KVFA 178 (282)
Q Consensus 120 ~v~giD~s~~~l~~~~~~------~-~-~~~~d~~~~~~l~--~~~~s~D~v~~~~~l~~~~--------~~~---~~l~ 178 (282)
+|+|+||-+++++..+.. . . ..+.+.- +.+. .+.+++|+++.+.. ++| .++ .+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sH--e~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSH--ENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-G--GGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCH--HHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHH
Confidence 589999999988654321 1 1 1122221 3332 23358999998865 443 223 3899
Q ss_pred HHHHcccCCcEEEEE
Q 023470 179 EVFRVLKPGGVFIVS 193 (282)
Q Consensus 179 ~~~r~LkpgG~li~~ 193 (282)
.+.+.|+|||.+.+.
T Consensus 77 ~al~lL~~gG~i~iv 91 (140)
T PF06962_consen 77 AALELLKPGGIITIV 91 (140)
T ss_dssp HHHHHEEEEEEEEEE
T ss_pred HHHHhhccCCEEEEE
Confidence 999999999999876
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.17 Score=42.81 Aligned_cols=100 Identities=22% Similarity=0.262 Sum_probs=59.5
Q ss_pred hCCCCCeEEEeCCccc---chhhhhc-CCCeEEEEcCCHH----HHHhCCCCCc--eEEeecccccCCCCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSWV---SHLPQEV-SYKRVVGHGLNAQ----ELAKNPRLEY--FIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~---~~~~~~~-~~~~v~giD~s~~----~l~~~~~~~~--~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
+++++.+||-+|++.| ++..... +..-|++++.|.. .+..+++..+ -++.|..-....-..-.-+|+|++
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec
Confidence 4578999999999544 3444433 6678999999863 3344444332 345554211111111235677776
Q ss_pred cchhhccCCHHH-HHHHHHHcccCCcEEEEEEcC
Q 023470 164 AVSVQYLQQPEK-VFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 164 ~~~l~~~~~~~~-~l~~~~r~LkpgG~li~~~~~ 196 (282)
--. -+|... +.-++...||+||.+++++-.
T Consensus 233 Dva---qpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 233 DVA---QPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred cCC---CchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 432 122222 556788899999999998643
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.18 Score=43.46 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=63.7
Q ss_pred CCCCCeEEEeCCcccch---hhhh-cCCCeEEEEcCCHHHHHhCC---------CCCceEEeecccccCCCCCCCceeEE
Q 023470 95 LRPGSEVLDLMSSWVSH---LPQE-VSYKRVVGHGLNAQELAKNP---------RLEYFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~---~~~~-~~~~~v~giD~s~~~l~~~~---------~~~~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
+.|+.+|||-|.|.|.. +++. .+..+++-.|+-..-.+++. .+..+...|+.. ......+..+|.|
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~-~GF~~ks~~aDaV 181 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCG-SGFLIKSLKADAV 181 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeeccc-CCccccccccceE
Confidence 56999999999987653 3332 37789999999765443332 233556666643 2334445678888
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+. -++.|..++-.++.+||.+|.-+++
T Consensus 182 FL-----DlPaPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 182 FL-----DLPAPWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred EE-----cCCChhhhhhhhHHHhhhcCceEEe
Confidence 77 5678888999999999998854444
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.11 Score=42.22 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=58.2
Q ss_pred CeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHHHhCCCCC--------ceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 99 SEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQELAKNPRLE--------YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 99 ~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l~~~~~~~--------~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
..+.|+|+|+|- ..+.. ...+|++++.++.-.+.+.++. +.+.+|. .+..| ...|+|+|-..=-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~-~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA---~~y~f--e~ADvvicEmlDT 107 (252)
T COG4076 34 DTFADLGAGSGILSVVAAH-AAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDA---RDYDF--ENADVVICEMLDT 107 (252)
T ss_pred hceeeccCCcchHHHHHHh-hhceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccc---ccccc--cccceeHHHHhhH
Confidence 678999998763 44443 3679999999998766655442 3345554 55555 4579998864311
Q ss_pred cc--CCHHHHHHHHHHcccCCcEEE
Q 023470 169 YL--QQPEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 169 ~~--~~~~~~l~~~~r~LkpgG~li 191 (282)
.+ .....+++.+...||.+|.++
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCccc
Confidence 11 233448888888999999876
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.16 Score=46.07 Aligned_cols=54 Identities=17% Similarity=0.109 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHhhCCC-CCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCC
Q 023470 82 GFISTLTNLYRQMLRP-GSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNP 135 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~ 135 (282)
...+.+.+.+.+.+.. +..|||+-||.|....... ...+|+|+|+++.+++.|+
T Consensus 180 ~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~ 235 (352)
T PF05958_consen 180 EQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR 235 (352)
T ss_dssp HHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH
Confidence 3444555555666553 3479999999876443332 5689999999999997654
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.15 Score=45.72 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=63.0
Q ss_pred CCCCCeEEEeCCcccchhhhhc--C-CCeEEEEcCCHHHHHhCCCCC---------------ceEEeecccccC-CCCCC
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV--S-YKRVVGHGLNAQELAKNPRLE---------------YFIVKDLNQDQK-LEFDH 155 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~--~-~~~v~giD~s~~~l~~~~~~~---------------~~~~~d~~~~~~-l~~~~ 155 (282)
++.-.+||-+|.|-|..+.+.. | ..+|+-+|.+|+|++.++... ..+..|. .+ +.-..
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDA---f~wlr~a~ 363 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDA---FQWLRTAA 363 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccH---HHHHHhhc
Confidence 3445679999998776555443 4 679999999999998776321 1112221 11 12233
Q ss_pred CceeEEEecchhhccCCH----------HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 156 CSFDAVVCAVSVQYLQQP----------EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 156 ~s~D~v~~~~~l~~~~~~----------~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+.||+||.-. +|| .++..-+.|.|+++|.+++.-..+
T Consensus 364 ~~fD~vIVDl-----~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 364 DMFDVVIVDL-----PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred ccccEEEEeC-----CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 5799988753 233 346778889999999999875544
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.016 Score=46.40 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=33.8
Q ss_pred eEEEeCCcccc-hhhhhcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccc-cCCCCCCCceeEEEec
Q 023470 100 EVLDLMSSWVS-HLPQEVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQD-QKLEFDHCSFDAVVCA 164 (282)
Q Consensus 100 ~vLDiGcG~~~-~~~~~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~-~~l~~~~~s~D~v~~~ 164 (282)
.|+|+.||.|. .+.-.....+|+++|+++..++.++.+ ..++.+|.... ..+.... .+|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~-~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNK-IFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccc-cccEEEEC
Confidence 58999998654 333333577999999999887655432 35666665321 1122111 17888876
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.066 Score=46.32 Aligned_cols=97 Identities=18% Similarity=0.132 Sum_probs=57.8
Q ss_pred CCCCeEEEeCCcccch--hhhhcCCCeEEEEcCCHHHHHhCC-CC--CceE----------Eeeccccc---CCCC-CCC
Q 023470 96 RPGSEVLDLMSSWVSH--LPQEVSYKRVVGHGLNAQELAKNP-RL--EYFI----------VKDLNQDQ---KLEF-DHC 156 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~--~~~~~~~~~v~giD~s~~~l~~~~-~~--~~~~----------~~d~~~~~---~l~~-~~~ 156 (282)
-.+.+|||+|||.+.. .+.......++..|.|.+.++... .+ ..+. +..+.. . ++.+ ..+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~-s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILN-SLLSDGVFNHTE 193 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccc-cccccchhhhcc
Confidence 3678999999986532 222224478999999987763211 00 0000 000000 1 1110 012
Q ss_pred --ceeEEEecchhhccCCHHHH-HHHHHHcccCCcEEEEE
Q 023470 157 --SFDAVVCAVSVQYLQQPEKV-FAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 157 --s~D~v~~~~~l~~~~~~~~~-l~~~~r~LkpgG~li~~ 193 (282)
.||+|.++.++-........ .......++++|.+++.
T Consensus 194 ~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 68999999888777766665 67777888999988765
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.14 Score=44.98 Aligned_cols=98 Identities=23% Similarity=0.380 Sum_probs=60.3
Q ss_pred CCCCCeEEEeCCccc---chhhhhcC-CCeEEEEcCCHHHHHhCC------CCCceEE--eecccccCC-C-CCCCceeE
Q 023470 95 LRPGSEVLDLMSSWV---SHLPQEVS-YKRVVGHGLNAQELAKNP------RLEYFIV--KDLNQDQKL-E-FDHCSFDA 160 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~---~~~~~~~~-~~~v~giD~s~~~l~~~~------~~~~~~~--~d~~~~~~l-~-~~~~s~D~ 160 (282)
..++..|||+++|-| .+++..+. ...|++.|++..-+..-+ +.....+ .|. ... + .....||.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~---~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADA---RKLDPKKPESKFDR 159 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHH---HHHHHHHHTTTEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecc---ccccccccccccch
Confidence 347889999999644 34555543 689999999987553211 1222222 233 222 1 22346999
Q ss_pred EEec------chhhccCCH----------------HHHHHHHHHcc----cCCcEEEEEEc
Q 023470 161 VVCA------VSVQYLQQP----------------EKVFAEVFRVL----KPGGVFIVSFS 195 (282)
Q Consensus 161 v~~~------~~l~~~~~~----------------~~~l~~~~r~L----kpgG~li~~~~ 195 (282)
|+.- .++..-++. .++|+++.+.+ ||||+++.++-
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 9974 233332221 23799999999 99999998864
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.045 Score=42.39 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=25.5
Q ss_pred eEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhC
Q 023470 100 EVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKN 134 (282)
Q Consensus 100 ~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~ 134 (282)
.+||+|||.|... +...+..+|+++|+++.+.+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l 38 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEIL 38 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHH
Confidence 3899999877542 3333556899999999887543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.069 Score=44.53 Aligned_cols=87 Identities=15% Similarity=0.070 Sum_probs=44.9
Q ss_pred EEEeCC--cc-cchhhhhcCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCc-eeEEEecchh
Q 023470 101 VLDLMS--SW-VSHLPQEVSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCS-FDAVVCAVSV 167 (282)
Q Consensus 101 vLDiGc--G~-~~~~~~~~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s-~D~v~~~~~l 167 (282)
|.|||| |. +.++.......+++++|+++.-++.++. ......+|.. ..+ +.+. .|+|+...+=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL--~~l--~~~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGL--EVL--KPGEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGG--GG----GGG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcc--ccc--CCCCCCCEEEEecCC
Confidence 689999 53 2344444455689999999987765542 1234444431 223 3333 7887777431
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
- .-..+.|.+....++....|++.
T Consensus 77 G--~lI~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 77 G--ELIIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp H--HHHHHHHHHTGGGGTT--EEEEE
T ss_pred H--HHHHHHHHhhHHHhccCCeEEEe
Confidence 0 01244666666666665566665
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.25 Score=40.52 Aligned_cols=24 Identities=50% Similarity=0.800 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHcccCCcEEEEEE
Q 023470 171 QQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 171 ~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
....++.+++++.|||||.+++..
T Consensus 143 ~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 143 ATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred chHHHHHHHHHHhcCCCcEEEEEe
Confidence 355679999999999999998874
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.15 Score=46.12 Aligned_cols=73 Identities=11% Similarity=0.080 Sum_probs=47.7
Q ss_pred eEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEec--chhhcc--CCHH----HHHHHHHH
Q 023470 120 RVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVCA--VSVQYL--QQPE----KVFAEVFR 182 (282)
Q Consensus 120 ~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~~--~~l~~~--~~~~----~~l~~~~r 182 (282)
.++|+|+++.+++.|+.+ ..|.+.|+ ..+.-+-+.+|+|||+ +...-- .... .+.+.+.+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~---~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~ 332 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADA---TDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKR 332 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcch---hhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHH
Confidence 377999999999766533 36677777 5555333789999999 332211 1122 24556667
Q ss_pred cccCCcEEEEEEc
Q 023470 183 VLKPGGVFIVSFS 195 (282)
Q Consensus 183 ~LkpgG~li~~~~ 195 (282)
.++--++++++..
T Consensus 333 ~~~~ws~~v~tt~ 345 (381)
T COG0116 333 LLAGWSRYVFTTS 345 (381)
T ss_pred HhcCCceEEEEcc
Confidence 7777778887743
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.16 Score=46.34 Aligned_cols=98 Identities=20% Similarity=0.385 Sum_probs=60.9
Q ss_pred CCCCeEEEeCC---cccchhhhhc-CCCeEEEEcCCHHHHHhCC------CCCceEEeecccccCCC---CCCCceeEEE
Q 023470 96 RPGSEVLDLMS---SWVSHLPQEV-SYKRVVGHGLNAQELAKNP------RLEYFIVKDLNQDQKLE---FDHCSFDAVV 162 (282)
Q Consensus 96 ~~~~~vLDiGc---G~~~~~~~~~-~~~~v~giD~s~~~l~~~~------~~~~~~~~d~~~~~~l~---~~~~s~D~v~ 162 (282)
+++.+|||+++ |-..+++..+ ....|++.|.+..-+..-. +..+.++..... ..+| ++. +||-|+
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~-~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDG-REFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCc-ccccccccCc-ccceee
Confidence 36889999988 4456777765 5679999999876553221 223444554432 2222 333 788887
Q ss_pred ec----c--hhh----------------ccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 163 CA----V--SVQ----------------YLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~----~--~l~----------------~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.- . ++. +..-..++|..+...+|+||+|+-++-
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 43 2 111 111113478889999999999998753
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.35 Score=45.91 Aligned_cols=97 Identities=15% Similarity=0.190 Sum_probs=60.5
Q ss_pred CCCeEEEeCCcc-cchh--hhhcCCCeEEEEcCCHHHHHhCCCCC-ceEEeeccccc--------CCC----------CC
Q 023470 97 PGSEVLDLMSSW-VSHL--PQEVSYKRVVGHGLNAQELAKNPRLE-YFIVKDLNQDQ--------KLE----------FD 154 (282)
Q Consensus 97 ~~~~vLDiGcG~-~~~~--~~~~~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~~~~--------~l~----------~~ 154 (282)
++.+|+=+|||. |... ....-+.+|+++|.+++-++.++... .+...+..... .+. +.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~ 243 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFA 243 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHH
Confidence 578999999984 2211 12224568999999998887766543 22222221100 000 01
Q ss_pred C--CceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 155 H--CSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 155 ~--~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+ +.+|+|+.+-....-+.+..+.+++.+.+||||.++..
T Consensus 244 ~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 244 EQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred hccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEE
Confidence 1 35899999876544444544569999999999998743
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.39 Score=43.92 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=60.6
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc----cCC-CC-CCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD----QKL-EF-DHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~----~~l-~~-~~~s~D~v~~ 163 (282)
.+.++.+||.+|||. |.. ++...+..+++++|.++++++.++......+.+.... ..+ .+ ....+|+|+.
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld 260 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCID 260 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEE
Confidence 345778999999974 333 2333343469999999988876654411112221110 001 11 2236898888
Q ss_pred cchh-----------hcc----CCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSV-----------QYL----QQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l-----------~~~----~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+-.- .|+ .+....+.++.+.|+|+|.++..
T Consensus 261 ~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 261 AVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 6321 121 35567899999999999999865
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.21 Score=38.85 Aligned_cols=39 Identities=23% Similarity=0.162 Sum_probs=28.1
Q ss_pred CCCCeEEEeCCcccc---hhhh----hcCCCeEEEEcCCHHHHHhC
Q 023470 96 RPGSEVLDLMSSWVS---HLPQ----EVSYKRVVGHGLNAQELAKN 134 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~---~~~~----~~~~~~v~giD~s~~~l~~~ 134 (282)
.+...|+|+|||.|. .++. ..+..+|+|+|.++..++.+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a 69 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESA 69 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHH
Confidence 356789999998653 2232 13678999999998876544
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.026 Score=41.52 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=36.3
Q ss_pred EEeCC--ccc-chhhhhc-CC--CeEEEEcCCHH---HHHhCC-----CCCceEEeecccccCCC-CCCCceeEEEecch
Q 023470 102 LDLMS--SWV-SHLPQEV-SY--KRVVGHGLNAQ---ELAKNP-----RLEYFIVKDLNQDQKLE-FDHCSFDAVVCAVS 166 (282)
Q Consensus 102 LDiGc--G~~-~~~~~~~-~~--~~v~giD~s~~---~l~~~~-----~~~~~~~~d~~~~~~l~-~~~~s~D~v~~~~~ 166 (282)
||+|+ |.. ..++... +. .+++++|..+. .-+..+ ....+..++.. +.++ ++.+++|+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSP--DFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-TH--HHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcH--HHHHHcCCCCEEEEEECCC
Confidence 68996 532 2333322 22 38999999983 222222 12234444432 1121 22578999988653
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|.-+.....+..+...|+|||.+++.
T Consensus 79 -H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 -HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 11223455888999999999999875
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=93.13 E-value=1 Score=38.93 Aligned_cols=98 Identities=12% Similarity=0.099 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhC------CCCCceEEeecccccCCCC
Q 023470 81 GGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKN------PRLEYFIVKDLNQDQKLEF 153 (282)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~------~~~~~~~~~d~~~~~~l~~ 153 (282)
....+.+.+.+. +.++..|||+|+|.|....... .+.+++++|+++.+.+.- ..+..++.+|. ..+..
T Consensus 16 ~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~---l~~~~ 90 (262)
T PF00398_consen 16 PNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDF---LKWDL 90 (262)
T ss_dssp HHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-T---TTSCG
T ss_pred HHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecch---hcccc
Confidence 345555555442 2378899999999886544332 348999999999876432 22335566666 45554
Q ss_pred CC---CceeEEEecchhhccCCHHHHHHHHHHcccC
Q 023470 154 DH---CSFDAVVCAVSVQYLQQPEKVFAEVFRVLKP 186 (282)
Q Consensus 154 ~~---~s~D~v~~~~~l~~~~~~~~~l~~~~r~Lkp 186 (282)
.+ +....|+++.-. ++ -..++..+...-+.
T Consensus 91 ~~~~~~~~~~vv~NlPy-~i--s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 91 YDLLKNQPLLVVGNLPY-NI--SSPILRKLLELYRF 123 (262)
T ss_dssp GGHCSSSEEEEEEEETG-TG--HHHHHHHHHHHGGG
T ss_pred HHhhcCCceEEEEEecc-cc--hHHHHHHHhhcccc
Confidence 33 345677776432 22 23466666663344
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.75 Score=39.38 Aligned_cols=101 Identities=21% Similarity=0.121 Sum_probs=64.2
Q ss_pred CCeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHH--HhCC--------CCC-ceEEeec--ccccCCCCCCCc-eeEE
Q 023470 98 GSEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQEL--AKNP--------RLE-YFIVKDL--NQDQKLEFDHCS-FDAV 161 (282)
Q Consensus 98 ~~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l--~~~~--------~~~-~~~~~d~--~~~~~l~~~~~s-~D~v 161 (282)
..+||++|+|+|. .++......+|+-.|+..... .... ... ...+..+ ..+....+.... +|+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 4579999998763 334444778999999886432 1111 111 2222221 111111111223 9999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
+++.++-+....+.++.-+...|-.+|.+++.++-+.
T Consensus 167 lasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 167 LASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999888889999999999999998777776543
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.56 Score=41.53 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=63.0
Q ss_pred hCCCCCeEEEeCCcc-c---chhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeeccccc---------CCCCCCCceeE
Q 023470 94 MLRPGSEVLDLMSSW-V---SHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQ---------KLEFDHCSFDA 160 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~---~~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~---------~l~~~~~s~D~ 160 (282)
.++.+.+||=+|+|. | ...++.++..+|+.+|+++.-++.|++..--.+....... .-.+.+..+|+
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDV 245 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCe
Confidence 456789999999982 2 2345556889999999999999988875411111110000 00122344888
Q ss_pred EEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 161 VVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 161 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
.+.+..+ +..++.....+|+||.+++.-
T Consensus 246 ~~dCsG~------~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 246 TFDCSGA------EVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred EEEccCc------hHHHHHHHHHhccCCEEEEec
Confidence 8877653 556788899999999977763
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.67 Score=41.53 Aligned_cols=92 Identities=11% Similarity=0.106 Sum_probs=55.9
Q ss_pred CCCCeEEEeCCc-ccch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc--cCCCCCCCceeEEEecchhhc
Q 023470 96 RPGSEVLDLMSS-WVSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD--QKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 96 ~~~~~vLDiGcG-~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~--~~l~~~~~s~D~v~~~~~l~~ 169 (282)
.++.+||=.||| .|.. ++...+..+|+++|.+++.++.+++...-.+.+.... ..+....+.+|+|+-+-.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC---
Confidence 367889989997 3332 2333344479999999988877665432222222110 111111234888877643
Q ss_pred cCCHHHHHHHHHHcccCCcEEEEE
Q 023470 170 LQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 170 ~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ...+..+.+.|++||++++.
T Consensus 245 --~-~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 245 --H-PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred --C-HHHHHHHHHHhhcCCEEEEE
Confidence 2 34678889999999998864
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.92 Score=43.05 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=66.8
Q ss_pred HHHHHHhhCC--CCCeEEEeCCcccchhhhhc-----C--CCeEEEEcCCHHHHHhCCCC------C---ceEEeecccc
Q 023470 87 LTNLYRQMLR--PGSEVLDLMSSWVSHLPQEV-----S--YKRVVGHGLNAQELAKNPRL------E---YFIVKDLNQD 148 (282)
Q Consensus 87 ~~~~~~~~~~--~~~~vLDiGcG~~~~~~~~~-----~--~~~v~giD~s~~~l~~~~~~------~---~~~~~d~~~~ 148 (282)
+.+++...+. +..+|+|-.||+|..+.... . ...++|.++++.....++-+ . ....++...
T Consensus 174 v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~- 252 (489)
T COG0286 174 VSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLS- 252 (489)
T ss_pred HHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccccc-
Confidence 4444444444 56689999999887654432 1 36799999998776555411 1 112222211
Q ss_pred cCC---CCCCCceeEEEec--ch-hhccC----------------------CHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 149 QKL---EFDHCSFDAVVCA--VS-VQYLQ----------------------QPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 149 ~~l---~~~~~s~D~v~~~--~~-l~~~~----------------------~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
... ....+.||.|+++ ++ -.|.. .....++.+...|+|||+..+.+|+.
T Consensus 253 ~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 253 NPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred CCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 111 1234679999998 22 11111 11458999999999999888887765
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.21 Score=41.67 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=44.3
Q ss_pred CCCeEEEeCCcc-cchhhhhcCCCeEEEEcCCHHHHHhCCCCC---------ceEEeecccc-cCCCCCCCceeEEEec
Q 023470 97 PGSEVLDLMSSW-VSHLPQEVSYKRVVGHGLNAQELAKNPRLE---------YFIVKDLNQD-QKLEFDHCSFDAVVCA 164 (282)
Q Consensus 97 ~~~~vLDiGcG~-~~~~~~~~~~~~v~giD~s~~~l~~~~~~~---------~~~~~d~~~~-~~l~~~~~s~D~v~~~ 164 (282)
....|+|.-||. |..+.....+..|+++|+++.-++.++.+. .|+++|.... ..+.+....+|+|+.+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 445689998863 445555558899999999998887776543 4556665221 2344444457777766
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.4 Score=44.42 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=58.9
Q ss_pred CCeEEEeCCcccc--hhhhhc---CCCeEEEEcCCHHHHHhCC----C---CCceEEee-cccccCCCCCCC-ceeEEEe
Q 023470 98 GSEVLDLMSSWVS--HLPQEV---SYKRVVGHGLNAQELAKNP----R---LEYFIVKD-LNQDQKLEFDHC-SFDAVVC 163 (282)
Q Consensus 98 ~~~vLDiGcG~~~--~~~~~~---~~~~v~giD~s~~~l~~~~----~---~~~~~~~d-~~~~~~l~~~~~-s~D~v~~ 163 (282)
...++|+|.|.|. ..+... ....++.||.|..|+.... . .....+.. ..-..-+|.... -||+|++
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 3457889887443 222222 2457889999999885432 1 11112222 111134554444 4999999
Q ss_pred cchhhccCCHHH---HHHH-HHHcccCCcEEEEEEcC
Q 023470 164 AVSVQYLQQPEK---VFAE-VFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 164 ~~~l~~~~~~~~---~l~~-~~r~LkpgG~li~~~~~ 196 (282)
.+.++++.+... ..++ +.+..++||.+++.-.+
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 999999975543 3444 45567889888876443
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.62 Score=42.13 Aligned_cols=91 Identities=21% Similarity=0.259 Sum_probs=58.8
Q ss_pred CCCeEEEeCCcc-cc---hhhhhcCCCeEEEEcCCHHHHHhCCCCC-ceEEeeccc-c---cCCCCCC-CceeEEEecch
Q 023470 97 PGSEVLDLMSSW-VS---HLPQEVSYKRVVGHGLNAQELAKNPRLE-YFIVKDLNQ-D---QKLEFDH-CSFDAVVCAVS 166 (282)
Q Consensus 97 ~~~~vLDiGcG~-~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~~-~---~~l~~~~-~s~D~v~~~~~ 166 (282)
++.+|+=+|||. |. .+++..+..+|+.+|.+++-++.+++.. .-.+.+... + ....... .-+|+++-+-.
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 445899999983 22 2344457799999999999888876632 111111110 0 0011112 25899887765
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
...++..+.++++|||.+++.
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEE
Confidence 245889999999999998764
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.3 Score=43.68 Aligned_cols=99 Identities=12% Similarity=0.059 Sum_probs=54.2
Q ss_pred CCeEEEeCCcccchhhhh---cC-CCeEEEEcCCHHHHHh----CC----CCCceEEeecccc-cCCCCCCCceeEEEec
Q 023470 98 GSEVLDLMSSWVSHLPQE---VS-YKRVVGHGLNAQELAK----NP----RLEYFIVKDLNQD-QKLEFDHCSFDAVVCA 164 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~---~~-~~~v~giD~s~~~l~~----~~----~~~~~~~~d~~~~-~~l~~~~~s~D~v~~~ 164 (282)
..+|||+|.|-|.-+-+. .| -.+++-++.|+..-+. +. ....+...++..+ ..+|. ...|++|+..
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl~i~~ 192 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTLAIVL 192 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc-cceeehhhhh
Confidence 356999999744322211 12 2345556666642211 11 1112333333321 23332 3457777777
Q ss_pred chhhccCC---HHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 165 VSVQYLQQ---PEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 165 ~~l~~~~~---~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.-|-+... ....++.++.++.|||.++|.-++.
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 66555543 2348899999999999999875553
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=91.32 E-value=2.7 Score=33.62 Aligned_cols=114 Identities=16% Similarity=0.123 Sum_probs=70.8
Q ss_pred cchhHHHHHHHHHHhhCCCCCeEEEeCCcccc-hhhh-hcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCC--CC
Q 023470 79 VDGGFISTLTNLYRQMLRPGSEVLDLMSSWVS-HLPQ-EVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLE--FD 154 (282)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~~~-~~~~-~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~--~~ 154 (282)
+++.....+.+.+.+......+|+-|||=+.. .+.. ..+..+++-+|++.+--....+ .|..-|.+....++ +
T Consensus 7 Ys~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~~--~F~fyD~~~p~~~~~~l- 83 (162)
T PF10237_consen 7 YSDETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGGD--EFVFYDYNEPEELPEEL- 83 (162)
T ss_pred cCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCCc--ceEECCCCChhhhhhhc-
Confidence 55566777777777766677899999995433 2222 2367789999999875543322 46666665444444 3
Q ss_pred CCceeEEEecchhhccCCH-HHHHHHHHHcccCCcEEEEEEcC
Q 023470 155 HCSFDAVVCAVSVQYLQQP-EKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 155 ~~s~D~v~~~~~l~~~~~~-~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.++||+|++-==+ -..+. .+....+.-++|+++.+++.++.
T Consensus 84 ~~~~d~vv~DPPF-l~~ec~~k~a~ti~~L~k~~~kii~~Tg~ 125 (162)
T PF10237_consen 84 KGKFDVVVIDPPF-LSEECLTKTAETIRLLLKPGGKIILCTGE 125 (162)
T ss_pred CCCceEEEECCCC-CCHHHHHHHHHHHHHHhCccceEEEecHH
Confidence 5789999995111 00011 12334555556888999888653
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.60 E-value=0.84 Score=38.54 Aligned_cols=87 Identities=20% Similarity=0.222 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHhhC----CCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCC-------CCceEEeeccc
Q 023470 82 GFISTLTNLYRQML----RPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQ 147 (282)
Q Consensus 82 ~~~~~~~~~~~~~~----~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~ 147 (282)
.++..+.+++.+-. .++.++||||.|--.. +.....+++.+|.|+++..++.|+. ...-+......
T Consensus 59 dYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk 138 (292)
T COG3129 59 DYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQK 138 (292)
T ss_pred HHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEecc
Confidence 35556666665432 2567899999984322 2222357899999999877754431 11111111111
Q ss_pred c-----cCCCCCCCceeEEEecchhh
Q 023470 148 D-----QKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 148 ~-----~~l~~~~~s~D~v~~~~~l~ 168 (282)
+ ..+--.++.||+++|+=-+|
T Consensus 139 ~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 139 DSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred CccccccccccccceeeeEecCCCcc
Confidence 1 12222367899999996554
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.33 Score=45.44 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=35.8
Q ss_pred HHHHHHHhh--CCCCCeEEEeCCcccch-hhhhcCCCeEEEEcCCHHHHHhCCC
Q 023470 86 TLTNLYRQM--LRPGSEVLDLMSSWVSH-LPQEVSYKRVVGHGLNAQELAKNPR 136 (282)
Q Consensus 86 ~~~~~~~~~--~~~~~~vLDiGcG~~~~-~~~~~~~~~v~giD~s~~~l~~~~~ 136 (282)
.+-..+.+. ++.+..+||+.||+|.. ++...+..+|+|+++++++++-|+.
T Consensus 370 vLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~ 423 (534)
T KOG2187|consen 370 VLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEK 423 (534)
T ss_pred HHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhh
Confidence 344444443 45677899999998754 3333478899999999999876553
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=90.27 E-value=1.3 Score=39.08 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=55.9
Q ss_pred CCCCCeEEEeCCcc-cchhhhh--cCCCeEEEEcCCHHHHHhCCCCC-ceEEeecccc--cCC-CCCCCceeEEEecchh
Q 023470 95 LRPGSEVLDLMSSW-VSHLPQE--VSYKRVVGHGLNAQELAKNPRLE-YFIVKDLNQD--QKL-EFDHCSFDAVVCAVSV 167 (282)
Q Consensus 95 ~~~~~~vLDiGcG~-~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~~~--~~l-~~~~~s~D~v~~~~~l 167 (282)
+.++.+||..|||. |...... ..+.+|++++.+++..+..+... .......... ..+ ....+.+|+|+.+..
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g- 241 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG- 241 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCC-
Confidence 55678888889863 3332221 24678999999998776543322 1111111000 000 123456999886532
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
....++++.+.|+++|.++..
T Consensus 242 -----~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 242 -----TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred -----CHHHHHHHHHHhhcCCEEEEE
Confidence 145788999999999998864
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.69 Score=35.30 Aligned_cols=68 Identities=13% Similarity=-0.097 Sum_probs=42.1
Q ss_pred CCCeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHHHhCCCCC-ceEEeecccc-cCCCCCCCceeEEEec
Q 023470 97 PGSEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQELAKNPRLE-YFIVKDLNQD-QKLEFDHCSFDAVVCA 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~~~-~~l~~~~~s~D~v~~~ 164 (282)
.+.+|+|||.+.|. ......+...|+++++++......+.+. .+.+.|-... .+++-.-+.||+.++-
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~iD 99 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVMD 99 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEEE
Confidence 67889999996553 3333447789999999998776554432 2344443221 3444344567776653
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=89.77 E-value=1.5 Score=32.72 Aligned_cols=86 Identities=14% Similarity=0.270 Sum_probs=51.0
Q ss_pred CCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCHH
Q 023470 97 PGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPE 174 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~ 174 (282)
..++|.++|-|.-...+... .+..++++|+.+. .++.-.++.+.|+.+ .++.+- ...|+|.|.- -+.
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~~g~~~v~DDitn-P~~~iY-~~A~lIYSiR------ppp 81 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAPEGLRFVVDDITN-PNISIY-EGADLIYSIR------PPP 81 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCcccceEEEccCCC-ccHHHh-hCccceeecC------CCH
Confidence 34589999999543333222 6699999999998 445555678888854 344432 2357777643 233
Q ss_pred HHHHHHHHcccC-CcEEEEE
Q 023470 175 KVFAEVFRVLKP-GGVFIVS 193 (282)
Q Consensus 175 ~~l~~~~r~Lkp-gG~li~~ 193 (282)
++...+.++-+. |..+++.
T Consensus 82 El~~~ildva~aVga~l~I~ 101 (129)
T COG1255 82 ELQSAILDVAKAVGAPLYIK 101 (129)
T ss_pred HHHHHHHHHHHhhCCCEEEE
Confidence 444444444332 4445555
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=89.47 E-value=0.38 Score=40.79 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=28.3
Q ss_pred CCCCCceeEEEec--chh--hcc-----------CCHHHHHHHHHHcccCCcEEEEEE
Q 023470 152 EFDHCSFDAVVCA--VSV--QYL-----------QQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 152 ~~~~~s~D~v~~~--~~l--~~~-----------~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
.++++|+|+|+.. +.+ ..- .-....+.+++|+|||||.+++-.
T Consensus 15 ~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 15 RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 3567778887777 221 100 012468999999999999987643
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.36 E-value=0.36 Score=42.35 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=29.7
Q ss_pred CCCCceeEEEec--chh--h------------ccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 153 FDHCSFDAVVCA--VSV--Q------------YLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 153 ~~~~s~D~v~~~--~~l--~------------~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+++++||+|++. +.+ . +..-....+.++.|+|||||.+++...
T Consensus 23 l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 23 IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 456788888885 321 0 111125689999999999999998644
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=88.79 E-value=3.5 Score=36.72 Aligned_cols=89 Identities=16% Similarity=0.024 Sum_probs=54.6
Q ss_pred hCCCCCeEEEeCCcc-cchhhh--hcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhcc
Q 023470 94 MLRPGSEVLDLMSSW-VSHLPQ--EVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~~~~--~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~ 170 (282)
.++++.+||=.|+|. |....+ ...+.+|++++.+++-++.+++..--.+.+. .+. ..+.+|+++-...
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~---~~~--~~~~~d~~i~~~~---- 232 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGA---YDT--PPEPLDAAILFAP---- 232 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccc---ccc--CcccceEEEECCC----
Confidence 456788999999963 322211 1245689999999887766665432222222 111 1234787654332
Q ss_pred CCHHHHHHHHHHcccCCcEEEEE
Q 023470 171 QQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 171 ~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ...+....++|++||++++.
T Consensus 233 -~-~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 233 -A-GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred -c-HHHHHHHHHhhCCCcEEEEE
Confidence 1 24788899999999998764
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.71 E-value=3.1 Score=37.23 Aligned_cols=90 Identities=9% Similarity=0.075 Sum_probs=54.9
Q ss_pred CCCCCeEEEeCCc-ccch---hhhh-cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhc
Q 023470 95 LRPGSEVLDLMSS-WVSH---LPQE-VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 95 ~~~~~~vLDiGcG-~~~~---~~~~-~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~ 169 (282)
..++.+||=+||| .|.. +++. .+..+|+++|.+++-++.++...... .. ..+. .+..+|+|+-.-.-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~--~~---~~~~-~~~g~d~viD~~G~-- 232 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY--LI---DDIP-EDLAVDHAFECVGG-- 232 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee--eh---hhhh-hccCCcEEEECCCC--
Confidence 4568899999997 3432 2332 34678999999987776655422111 11 1111 11237888764430
Q ss_pred cCCHHHHHHHHHHcccCCcEEEEE
Q 023470 170 LQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 170 ~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
......+.+..++|++||++++.
T Consensus 233 -~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 233 -RGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred -CccHHHHHHHHHhCcCCcEEEEE
Confidence 01245788999999999998753
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.51 E-value=2.5 Score=35.47 Aligned_cols=98 Identities=18% Similarity=0.115 Sum_probs=53.7
Q ss_pred hhCCCCCeEEEeCCc--c-cchhhhhcCCCeEEEEcCCHHHHHhCC------CCCceEEeecccc-cCCCCCCCceeEEE
Q 023470 93 QMLRPGSEVLDLMSS--W-VSHLPQEVSYKRVVGHGLNAQELAKNP------RLEYFIVKDLNQD-QKLEFDHCSFDAVV 162 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG--~-~~~~~~~~~~~~v~giD~s~~~l~~~~------~~~~~~~~d~~~~-~~l~~~~~s~D~v~ 162 (282)
..++.+.++.||||- . ..++....+...+++.|+++.-++.+. .....+..+..+. ..+. .+..+|+|+
T Consensus 12 ~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~-~~d~~d~iv 90 (226)
T COG2384 12 NLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE-LEDEIDVIV 90 (226)
T ss_pred HHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC-ccCCcCEEE
Confidence 344466679999994 2 334555557789999999987654432 2233444444321 1222 233588887
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
...+ --.-....+++-...|+.=-++++.
T Consensus 91 IAGM--GG~lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 91 IAGM--GGTLIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred EeCC--cHHHHHHHHHHhhhhhcCcceEEEC
Confidence 7643 1112234555555555533345544
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=87.70 E-value=1 Score=37.35 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=33.0
Q ss_pred HHHHHHHHhhCCCCCeEEEeCCcccchhhh-hcCCCeEEEEcCCHHHHHhC
Q 023470 85 STLTNLYRQMLRPGSEVLDLMSSWVSHLPQ-EVSYKRVVGHGLNAQELAKN 134 (282)
Q Consensus 85 ~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~-~~~~~~v~giD~s~~~l~~~ 134 (282)
+.+..++...-.++..|||.=||.|..+.. ..-+.+.+|+|++++..+.+
T Consensus 179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIA 229 (231)
T ss_dssp HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHH
T ss_pred HHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHh
Confidence 334445555667899999999988765433 34678999999999877654
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=87.65 E-value=1.7 Score=40.28 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=52.4
Q ss_pred CCCCeEEEeCCcc-cchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCC
Q 023470 96 RPGSEVLDLMSSW-VSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQ 172 (282)
Q Consensus 96 ~~~~~vLDiGcG~-~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~ 172 (282)
.++.+|+=+|||. |...+.. ..+.+|+.+|.++.-++.+..... ...+.. +.+ ...|+|+..-. .
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~-~~~~~~--e~v----~~aDVVI~atG-----~ 267 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGY-EVMTME--EAV----KEGDIFVTTTG-----N 267 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCC-EEccHH--HHH----cCCCEEEECCC-----C
Confidence 4688999999984 4333222 245689999999876655554331 222221 111 24699987532 3
Q ss_pred HHHHHHH-HHHcccCCcEEEEE
Q 023470 173 PEKVFAE-VFRVLKPGGVFIVS 193 (282)
Q Consensus 173 ~~~~l~~-~~r~LkpgG~li~~ 193 (282)
..++.. ..+.+|+||+++..
T Consensus 268 -~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 268 -KDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred -HHHHHHHHHhcCCCCcEEEEe
Confidence 334554 58999999998754
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=86.26 E-value=4.3 Score=35.76 Aligned_cols=84 Identities=14% Similarity=0.085 Sum_probs=52.6
Q ss_pred CCCCeEEEeCCc-ccch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccC
Q 023470 96 RPGSEVLDLMSS-WVSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 96 ~~~~~vLDiGcG-~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~ 171 (282)
.++.+||=+||| .|.. +++..+...|+++|.+++.++.+.... +.+.. .. ....+|+|+-+-.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~---~i~~~--~~---~~~g~Dvvid~~G----- 209 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE---VLDPE--KD---PRRDYRAIYDASG----- 209 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc---ccChh--hc---cCCCCCEEEECCC-----
Confidence 356678888997 3332 333334455778899988776655421 11211 11 1245888887644
Q ss_pred CHHHHHHHHHHcccCCcEEEEE
Q 023470 172 QPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 172 ~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ...++.+.+.|++||++++.
T Consensus 210 ~-~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 210 D-PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred C-HHHHHHHHHhhhcCcEEEEE
Confidence 2 34678889999999998854
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=85.63 E-value=4.5 Score=36.43 Aligned_cols=94 Identities=10% Similarity=0.127 Sum_probs=54.6
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-CC-CCCceeEEEec
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-EF-DHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~~-~~~s~D~v~~~ 164 (282)
.+.++.+||=.|||. |.. +++..+..+|+++|.+++.++.++....-.+.+.... ..+ .. ....+|+|+-+
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 356788999899963 332 2333333469999999877665543321112222110 000 01 12358888765
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-. . ...+....+.|++||++++.
T Consensus 253 ~g-----~-~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 253 VG-----R-PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CC-----C-HHHHHHHHHHhccCCEEEEE
Confidence 43 2 34677888999999998864
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=84.92 E-value=1.6 Score=41.51 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=59.3
Q ss_pred CCCeEEEeCCcc-cchhhh--hcCCCeEEEEcCCHHHHHhCCCCC-ceEEeecccc--------cC------------CC
Q 023470 97 PGSEVLDLMSSW-VSHLPQ--EVSYKRVVGHGLNAQELAKNPRLE-YFIVKDLNQD--------QK------------LE 152 (282)
Q Consensus 97 ~~~~vLDiGcG~-~~~~~~--~~~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~~~--------~~------------l~ 152 (282)
++.+||=+|||. |..... ..-+..|+++|.+++.++.++... .+...+...+ .. ++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~ 242 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA 242 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence 457899999984 222221 124578999999998776665432 2222221100 00 11
Q ss_pred CCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEE
Q 023470 153 FDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 153 ~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 191 (282)
-.-..+|+|+.+-.+..-+.|.-+.+++.+.+|||+.++
T Consensus 243 e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 112459999888766555566568899999999999876
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=84.84 E-value=11 Score=32.49 Aligned_cols=99 Identities=21% Similarity=0.195 Sum_probs=59.5
Q ss_pred CeEEEeCCcccchhhhhc--CCCeEEEEcCCHH------HHHhC----CCCCceEEeecccc--cCC---CCCCCceeEE
Q 023470 99 SEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQ------ELAKN----PRLEYFIVKDLNQD--QKL---EFDHCSFDAV 161 (282)
Q Consensus 99 ~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~------~l~~~----~~~~~~~~~d~~~~--~~l---~~~~~s~D~v 161 (282)
..|+.+|||.-....+.. .+..++-+|.-.- .+... .....++..|+..+ ..+ .+..+.--++
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~ 162 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTAW 162 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCeee
Confidence 469999999643322221 2466777776642 22221 12234555555411 111 2323344577
Q ss_pred EecchhhccCC--HHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 162 VCAVSVQYLQQ--PEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 162 ~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
++-.++.+++. ...+|+.+.+...||+.+++...++
T Consensus 163 i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 163 LWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred eecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 77888889963 4458999998888999999987654
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=84.78 E-value=3.7 Score=34.61 Aligned_cols=91 Identities=26% Similarity=0.280 Sum_probs=54.2
Q ss_pred CCCCeEEEeCCcc-cchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC-----CCCCCceeEEEecchh
Q 023470 96 RPGSEVLDLMSSW-VSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-----EFDHCSFDAVVCAVSV 167 (282)
Q Consensus 96 ~~~~~vLDiGcG~-~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-----~~~~~s~D~v~~~~~l 167 (282)
.++.+||-.|+|. |..+... ..+.+|++++.+++..+..+....-.+.+... ... ....+.+|+++.+..-
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~d~vi~~~~~ 211 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKE-EDLEEELRLTGGGGADVVIDAVGG 211 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCc-CCHHHHHHHhcCCCCCEEEECCCC
Confidence 5788999999974 3332221 24589999999987655443221111111110 000 1123569999875431
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
...+..+.+.|+++|.++..
T Consensus 212 ------~~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 212 ------PETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred ------HHHHHHHHHhcccCCEEEEE
Confidence 14677888999999998864
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.26 E-value=2.2 Score=37.35 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=36.9
Q ss_pred HHHHHHHhhCCCCCeEEEeCCcccchhh-hhcCCCeEEEEcCCHHHHHhCCC
Q 023470 86 TLTNLYRQMLRPGSEVLDLMSSWVSHLP-QEVSYKRVVGHGLNAQELAKNPR 136 (282)
Q Consensus 86 ~~~~~~~~~~~~~~~vLDiGcG~~~~~~-~~~~~~~v~giD~s~~~l~~~~~ 136 (282)
.+..++...-.++..|||--||.|..+. +..-+.+.+|+|++++..+.+..
T Consensus 197 L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~ 248 (284)
T PRK11524 197 LLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLR 248 (284)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHH
Confidence 3444455555689999999998876543 34467899999999987765543
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=83.72 E-value=4.7 Score=36.49 Aligned_cols=94 Identities=16% Similarity=0.166 Sum_probs=54.3
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-CCCCCceeEEEecc
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-EFDHCSFDAVVCAV 165 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~~~~~s~D~v~~~~ 165 (282)
.+.++.+||=.|+|. |.. +++..+..+|+++|.+++.++.++...--.+.+.... +.+ ....+.+|+|+-+-
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~ 267 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMA 267 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECC
Confidence 355778888899973 332 2332333379999999887766544321112221110 000 01122588888653
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. . ...+..+.+.|++||++++.
T Consensus 268 G-----~-~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 268 G-----S-VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred C-----C-hHHHHHHHHHHhcCCEEEEE
Confidence 2 1 35678888999999998754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=83.65 E-value=1.6 Score=40.04 Aligned_cols=41 Identities=20% Similarity=0.367 Sum_probs=35.6
Q ss_pred CCCCceeEEEecchhhccCC--HHHHHHHHHHcccCCcEEEEE
Q 023470 153 FDHCSFDAVVCAVSVQYLQQ--PEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 153 ~~~~s~D~v~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~ 193 (282)
.+++++|.++.+..+.++++ ..+.++++.+.++|||++++=
T Consensus 291 ~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 291 LPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred CCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 45799999999999999964 445899999999999999874
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=83.29 E-value=1.6 Score=32.27 Aligned_cols=31 Identities=10% Similarity=-0.203 Sum_probs=20.9
Q ss_pred CCCeEEEeCCcccch--hhhhcCCCeEEEEcCCH
Q 023470 97 PGSEVLDLMSSWVSH--LPQEVSYKRVVGHGLNA 128 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~--~~~~~~~~~v~giD~s~ 128 (282)
+....+|||||.|.. +.. ..+..-.|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~-~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILN-SEGYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHH-hCCCCcccccccc
Confidence 355699999997753 332 2566778888654
|
; GO: 0008168 methyltransferase activity |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=83.23 E-value=9.1 Score=33.68 Aligned_cols=93 Identities=15% Similarity=0.054 Sum_probs=54.1
Q ss_pred hCCCCCeEEEeCCc-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCC-ceEEeecccccCCCCCCCceeEEEecchhhc
Q 023470 94 MLRPGSEVLDLMSS-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLE-YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~ 169 (282)
.+.++.+||-.||| .|..+... ..+.+|++++.+++..+..+... ...+..... ....-..+.+|+++.+..
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~d~vi~~~~--- 234 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAE-LDEQAAAGGADVILVTVV--- 234 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCc-chHHhccCCCCEEEECCC---
Confidence 35577889989996 44333222 24678999999988765543221 111111100 000001245898887532
Q ss_pred cCCHHHHHHHHHHcccCCcEEEEE
Q 023470 170 LQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 170 ~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ...+.++.+.|+++|.++..
T Consensus 235 --~-~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 235 --S-GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred --c-HHHHHHHHHhcccCCEEEEE
Confidence 1 34678889999999998764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=83.04 E-value=2.4 Score=32.33 Aligned_cols=89 Identities=15% Similarity=0.202 Sum_probs=42.2
Q ss_pred CCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhccCCHH
Q 023470 97 PGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPE 174 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~ 174 (282)
+..+|+|+|-|.-...+... .+..|+++|+.+. .++....+...|+.. .++.+- ...|+|.|.-- -++..
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~~g~~~v~DDif~-P~l~iY-~~a~lIYSiRP---P~El~ 84 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAPEGVNFVVDDIFN-PNLEIY-EGADLIYSIRP---PPELQ 84 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S-------STTEE---SSS---HHHH-TTEEEEEEES-----TTSH
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccccCcceeeecccC-CCHHHh-cCCcEEEEeCC---ChHHh
Confidence 44599999999533333222 4589999999997 333445677888743 233322 35788888653 22334
Q ss_pred HHHHHHHHcccCCcEEEEEEc
Q 023470 175 KVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 175 ~~l~~~~r~LkpgG~li~~~~ 195 (282)
..+-++.+.+ |.-+++...
T Consensus 85 ~~il~lA~~v--~adlii~pL 103 (127)
T PF03686_consen 85 PPILELAKKV--GADLIIRPL 103 (127)
T ss_dssp HHHHHHHHHH--T-EEEEE-B
T ss_pred HHHHHHHHHh--CCCEEEECC
Confidence 4444444432 566777643
|
; PDB: 2K4M_A. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=82.32 E-value=2.9 Score=31.36 Aligned_cols=70 Identities=23% Similarity=0.358 Sum_probs=47.2
Q ss_pred CCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-C-CCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEE
Q 023470 118 YKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-E-FDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 118 ~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~-~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
+.+|+++|.+++-++.+++...-.+.+.... +.+ . .+...+|+|+-+-. -...++....+|+|||.+++
T Consensus 14 G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~ 87 (130)
T PF00107_consen 14 GAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------SGDTLQEAIKLLRPGGRIVV 87 (130)
T ss_dssp TSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------SHHHHHHHHHHEEEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC------cHHHHHHHHHHhccCCEEEE
Confidence 4899999999987776665542233333211 011 1 22357999987754 25688999999999999987
Q ss_pred E
Q 023470 193 S 193 (282)
Q Consensus 193 ~ 193 (282)
.
T Consensus 88 v 88 (130)
T PF00107_consen 88 V 88 (130)
T ss_dssp E
T ss_pred E
Confidence 6
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.21 E-value=7.1 Score=35.33 Aligned_cols=104 Identities=20% Similarity=0.297 Sum_probs=55.0
Q ss_pred HhhCCCCCeEEEeCC--c--ccchhhhhc-C--CCeEEEEcCCHH---HHHh-CCCC--CceEEeeccc--ccCC-----
Q 023470 92 RQMLRPGSEVLDLMS--S--WVSHLPQEV-S--YKRVVGHGLNAQ---ELAK-NPRL--EYFIVKDLNQ--DQKL----- 151 (282)
Q Consensus 92 ~~~~~~~~~vLDiGc--G--~~~~~~~~~-~--~~~v~giD~s~~---~l~~-~~~~--~~~~~~d~~~--~~~l----- 151 (282)
.-.+.|+.+|||+++ | +...+.... . ...|++=|.+.. ||.. .+.. ....+..... -...
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccC
Confidence 334568999999987 4 112222221 1 347999999875 3321 1111 1111111100 0111
Q ss_pred -CCCCCceeEEEec------chhhccCCH-----------------HHHHHHHHHcccCCcEEEEEEc
Q 023470 152 -EFDHCSFDAVVCA------VSVQYLQQP-----------------EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 152 -~~~~~s~D~v~~~------~~l~~~~~~-----------------~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+.....||-|+|- .++.+.++. -.++.+..+.||+||.++-++-
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC 297 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC 297 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 1223457877764 233333221 1278899999999999998854
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=81.61 E-value=8.8 Score=33.85 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=54.2
Q ss_pred hCCCCCeEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC-----CCCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-----EFDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-----~~~~~s~D~v~~~ 164 (282)
.+.++.+||=.|. | .|....+. ..+.+|++++.+++..+.++...--.+.+......+ ....+.+|+|+-+
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~ 214 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDN 214 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEEC
Confidence 3567889988885 4 44333222 246689999999876665543321111111100000 1112458998865
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.. ...+..+.++|++||+++..
T Consensus 215 ~G-------~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 215 VG-------GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CC-------HHHHHHHHHHhCcCcEEEEe
Confidence 43 23468889999999999853
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=81.33 E-value=13 Score=32.95 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=53.1
Q ss_pred CCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc--cCC-CC-CCCceeEEEecch
Q 023470 95 LRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD--QKL-EF-DHCSFDAVVCAVS 166 (282)
Q Consensus 95 ~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~--~~l-~~-~~~s~D~v~~~~~ 166 (282)
+.++.+||=+|+|. |.. +++..+..+|+++|.+++.++.+++..--.+.+.... ..+ .. ....+|+|+-+..
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g 240 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG 240 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC
Confidence 45688888889973 322 2333333349999999877665543321112221110 011 11 2236899886532
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-...+....+.|+++|++++.
T Consensus 241 ------~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 241 ------NTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEE
Confidence 134567788999999998753
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=80.84 E-value=3.8 Score=34.64 Aligned_cols=49 Identities=24% Similarity=0.167 Sum_probs=35.3
Q ss_pred HHHHHHhhCCCCCeEEEeCCcccchhhh-hcCCCeEEEEcCCHHHHHhCC
Q 023470 87 LTNLYRQMLRPGSEVLDLMSSWVSHLPQ-EVSYKRVVGHGLNAQELAKNP 135 (282)
Q Consensus 87 ~~~~~~~~~~~~~~vLDiGcG~~~~~~~-~~~~~~v~giD~s~~~l~~~~ 135 (282)
+..++.....++..|||-=||.|..+.. ..-+.+++|+|++++..+.+.
T Consensus 153 ~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~ 202 (227)
T PRK13699 153 LQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQ 202 (227)
T ss_pred HHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHH
Confidence 3444445556889999999998865443 346789999999998765543
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.82 E-value=6.2 Score=34.15 Aligned_cols=91 Identities=12% Similarity=0.075 Sum_probs=52.9
Q ss_pred CCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc----cCCCCCCCceeEEEecchh
Q 023470 96 RPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD----QKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 96 ~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~----~~l~~~~~s~D~v~~~~~l 167 (282)
.++.+||=+|+|. |.. +++..+..+|+++|.+++-++.+++...-.+.+.... ..+. ....+|+|+-.-.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~-~~~g~d~vid~~G- 196 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQ-NGRGVDVALEFSG- 196 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHh-CCCCCCEEEECCC-
Confidence 3677899899973 322 2333344459999999876665544321111111100 0111 1235888876542
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-...++.+.+.|+|+|++++.
T Consensus 197 -----~~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 197 -----ATAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred -----ChHHHHHHHHHhcCCCEEEEe
Confidence 145678889999999998754
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 282 | ||||
| 2gs9_A | 211 | Crystal Structure Of Tt1324 From Thermus Thermophil | 4e-04 | ||
| 1ve3_A | 227 | Crystal Structure Of Ph0226 Protein From Pyrococcus | 5e-04 |
| >pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8 Length = 211 | Back alignment and structure |
|
| >pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus Horikoshii Ot3 Length = 227 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 2e-17
Identities = 37/174 (21%), Positives = 71/174 (40%), Gaps = 16/174 (9%)
Query: 62 NTYSDRDFY-AYPRFVTHVDGGFISTLTNLYRQML--RPGSEVLDLM--SSWVSHLPQEV 116
N Y D+ F+ Y + +G + + ++ML VLDL W E
Sbjct: 6 NKYDDKHFFEQYSQMPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEH 65
Query: 117 SYKRVVG----HGL--NAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170
K+V+G + A+ +P + Y K + + + + +++ V+ ++++ Y+
Sbjct: 66 GAKKVLGIDLSERMLTEAKRKTTSPVVCY-EQKAI---EDIAIEPDAYNVVLSSLALHYI 121
Query: 171 QQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAW-RDGTAYGRVQLVVQYF 223
+ + +V+ LK G FI S + +F W D T V +YF
Sbjct: 122 ASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYF 175
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 4e-16
Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 22/156 (14%)
Query: 66 DRDFYAYPRFVTHV-DGGFISTLTNLYRQMLRPGSEVLDL------MSSWVSHLPQEVSY 118
D + + + D G ST+ + Q ++ +EVLD+ + +S
Sbjct: 21 DSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT-----G 75
Query: 119 KRVVGHGLN------AQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQ 172
+ VG ++ +E + P L FI DL L F++ F+A++ S+++ ++
Sbjct: 76 YKAVGVDISEVMIQKGKERGEGPDLS-FIKGDL---SSLPFENEQFEAIMAINSLEWTEE 131
Query: 173 PEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWR 208
P + E+ RVLK G ++ + S R
Sbjct: 132 PLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPR 167
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 6e-16
Identities = 39/174 (22%), Positives = 66/174 (37%), Gaps = 15/174 (8%)
Query: 62 NTYSDRDFYA-YPRFVTHVDGGFISTLTNLYRQML--RPGSEVLDLM--SSWVSHLPQEV 116
N Y DF+A Y + ++G + R ML G ++DL W E
Sbjct: 5 NIYDQPDFFAGYSQLGRSIEGLDGAAEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH 64
Query: 117 SYKRVVG----HGL--NAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170
V+G + A+ + + Y DL KL SFD ++++ Y+
Sbjct: 65 GASYVLGLDLSEKMLARARAAGPDTGITY-ERADL---DKLHLPQDSFDLAYSSLALHYV 120
Query: 171 QQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQ 224
+ ++F V + L PGG F+ S + ++ A W R + +Y
Sbjct: 121 EDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLV 174
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 1e-14
Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 30/186 (16%)
Query: 63 TYSDRDFYAYPRFVTHVDGGFISTLTNLYRQMLRPGSEVLDL------MSSWVSHLPQEV 116
R F Y + I TL L + ++ +VLDL S + EV
Sbjct: 4 KEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEV 63
Query: 117 SYKRVVGHGLN--------AQELAKNPRLE-YFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167
G++ A+E AK+ FIV D +KL F+ +FD V+ S+
Sbjct: 64 -------VGVDISEDMIRKAREYAKSRESNVEFIVGDA---RKLSFEDKTFDYVIFIDSI 113
Query: 168 QYLQQPE--KVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQC 225
+ + E +VF EV RVLKP G FI+ F++ + + ++ G+ + +
Sbjct: 114 VHFEPLELNQVFKEVRRVLKPSGKFIMYFTD---LRELLPRLKESLVVGQKYWISKVIPD 170
Query: 226 VEGYTN 231
E T
Sbjct: 171 QEERTV 176
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 2e-14
Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 17/122 (13%)
Query: 92 RQMLRPGSEVLDL------MSSWVSHLPQEVSYKRVVGHGLNAQ--ELAKNPRLEYFIVK 143
+ L+ VLDL S ++ VV + + E+A+ ++ +
Sbjct: 49 EEYLKNPCRVLDLGGGTGKWSLFLQERG-----FEVVLVDPSKEMLEVAREKGVKNVVEA 103
Query: 144 DLNQDQKLEFDHCSFDAVVC-AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEK 202
+ L F +F+AV+ + Y++ +K F+E+ RVL P G+ I + N + +
Sbjct: 104 KA---EDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQ 160
Query: 203 AI 204
+
Sbjct: 161 QM 162
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 5e-14
Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 25/160 (15%)
Query: 95 LRPGSEVLDLMS---SWVSHLPQEVSYKRVVGHGLN------AQELAKNPRLE--YFIVK 143
PG++VL+ + L + + ++ A+E + ++ F+
Sbjct: 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQA 94
Query: 144 DLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIV---SFSNRMFY 200
++ L F+ SFD + +++LQ PE+ + +VLKPGG V + F+
Sbjct: 95 NI---FSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFH 151
Query: 201 EKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPA 240
+ A RVQ N + R++
Sbjct: 152 PEGKKAIEAWNCLIRVQ--------AYMKGNSLVGRQIYP 183
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 1e-13
Identities = 40/197 (20%), Positives = 76/197 (38%), Gaps = 29/197 (14%)
Query: 92 RQMLRPGSEVLDLMS---SWVSHLPQEVSYKRVVGHGLNAQELA----KNPRLEYFIVKD 144
+ +L PG +L++ + W+ LP + VG + LA + P ++
Sbjct: 31 KGLLPPGESLLEVGAGTGYWLRRLPYP----QKVGVEPSEAMLAVGRRRAPEAT-WVRAW 85
Query: 145 LNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAI 204
+ L F SFD V+ ++++++ E+V E RVL+PGG +V +
Sbjct: 86 G---EALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEA------L 136
Query: 205 SAWRDGTAYGRV-QLVVQYFQCVEGYTNPEIVRKLPADSAAAQ-----EDKSPISWLMRL 258
S W Y R+ + V + ++ L A + + P L
Sbjct: 137 SPW--AALYRRLGEKGVLPWAQARFLAREDLKALLGPPEAEGEAVFLAPEAHPPYEEADL 194
Query: 259 LGFLSGSDPFYAVIAYK 275
G +G+ P + ++
Sbjct: 195 AGRRAGNRPALYLGRWR 211
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 6e-13
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 149 QKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWR 208
+ + D +V SV + + F E++R+LK GG + F K +
Sbjct: 103 HNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGG---GFGNKELRDSI 159
Query: 209 DGTAYGRVQLVVQYFQCVEGYTNPEIVRKL 238
+ ++ + N E + +
Sbjct: 160 SAEMIRKNPDWKEFNRKNISQENVERFQNV 189
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 1e-12
Identities = 28/176 (15%), Positives = 66/176 (37%), Gaps = 31/176 (17%)
Query: 71 AYPRFVTHVDGGFISTLTNLYRQMLRPGSEVLDL------MSSWVSHLPQEVSYKRVVGH 124
Y R+ ++S L + + L P +++ + + K +G
Sbjct: 23 EYERWFLVHRFAYLSELQAV--KCLLPEGRGVEIGVGTGRFAVPL---------KIKIGV 71
Query: 125 GLNAQ--ELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFR 182
+ + E+A+ + + + L SFD + ++ ++ PE+ E +R
Sbjct: 72 EPSERMAEIARKRGVF-VLKGTA---ENLPLKDESFDFALMVTTICFVDDPERALKEAYR 127
Query: 183 VLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKL 238
+LK GG IV +R + G Y + + +++ ++ E++ +
Sbjct: 128 ILKKGGYLIVGIVDRESF--------LGREYEKNKEKSVFYKNARFFSTEELMDLM 175
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 2e-12
Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 26/161 (16%)
Query: 86 TLTNLYRQMLRPGSEV--LDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVK 143
L + +L GS+ +D + + + + +++ F+
Sbjct: 35 YLGLVLMPLLPEGSKYTGIDSGETLL-----AEARELFRLLPYDSE----------FLEG 79
Query: 144 DLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRM----F 199
D ++E + +D +C + ++ PE + ++ +K GG I + +
Sbjct: 80 DA---TEIELND-KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMAS 135
Query: 200 YEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPA 240
Y + G +Q + + G + I K+P
Sbjct: 136 YLLDGEKQSEFIQLGVLQKLFESDTQRNGK-DGNIGMKIPI 175
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 7e-12
Identities = 22/131 (16%), Positives = 35/131 (26%), Gaps = 44/131 (33%)
Query: 90 LYRQMLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELA----------------- 132
L M G+++LD G G L+
Sbjct: 39 LIDAMAPRGAKILDAGC----------------GQGRIGGYLSKQGHDVLGTDLDPILID 82
Query: 133 ----KNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPE---KVFAEVFRVLK 185
P ++V DL + FD +V A +V + A + R L
Sbjct: 83 YAKQDFPEAR-WVVGDL---SVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALG 138
Query: 186 PGGVFIVSFSN 196
G ++ F
Sbjct: 139 ADGRAVIGFGA 149
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 8e-12
Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 32/164 (19%)
Query: 71 AYPRFVTHVDGGFISTLTNLYRQMLRPGSEVLDL------MSSWVSHLPQEVSYKRVVGH 124
Y H G ++ L + L+ EVLD+ +++ + K+VV
Sbjct: 13 MYVTSQIHAKGSDLAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPF-----VKKVVAF 65
Query: 125 GLN------AQELAKNPRLEY--FIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKV 176
L A+ + + ++ D +++ F F V C ++ + P
Sbjct: 66 DLTEDILKVARAFIEGNGHQQVEYVQGDA---EQMPFTDERFHIVTCRIAAHHFPNPASF 122
Query: 177 FAEVFRVLKPGGVFIVS-FSN------RMFYEKAISAWRDGTAY 213
+E +RVLK GG ++ S +FY + RD + +
Sbjct: 123 VSEAYRVLKKGGQLLLVDNSAPENDAFDVFYN-YVEKERDYSHH 165
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 1e-11
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 128 AQELAKNPRLE-YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPE--KVFAEVFRVL 184
A+ ++ + D+ +KL F S V ++ ++++ + + E+ RVL
Sbjct: 62 AENFSRENNFKLNISKGDI---RKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVL 118
Query: 185 KPGGVFIVSFSNR 197
KPGG+ ++F
Sbjct: 119 KPGGLACINFLTT 131
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 2e-11
Identities = 30/162 (18%), Positives = 51/162 (31%), Gaps = 27/162 (16%)
Query: 95 LRPGSEVLDLMS---SWVSHLPQEVSYKRVVGHGLN------AQELAKNPRLEY--FIVK 143
R VLD+ + V + +G A A+ +E F
Sbjct: 19 CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQG 76
Query: 144 DLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS-FSN------ 196
+ L F SFD + C + + K EV RVLK G F++
Sbjct: 77 TA---ESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVL 133
Query: 197 RMFYEKAISAWRDGTAYGRVQLVVQYFQCVE--GYTNPEIVR 236
F ++ RD ++ R + ++ +I +
Sbjct: 134 DEFVN-HLNRLRD-PSHVRESSLSEWQAMFSANQLAYQDIQK 173
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 2e-11
Identities = 14/109 (12%), Positives = 36/109 (33%), Gaps = 9/109 (8%)
Query: 128 AQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPG 187
A+ + + +D + ++ + Q ++ + + +L PG
Sbjct: 90 ARAAGAGEVHLASYAQL---AEAKVPVGKDYDLICANFALLH-QDIIELLSAMRTLLVPG 145
Query: 188 GVFIVSFSNRMFYEKAI--SAWRDGTAYGRV---QLVVQYFQCVEGYTN 231
G ++ + WR+ + G Q + YF+ + + N
Sbjct: 146 GALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLN 194
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 4e-11
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 16/111 (14%)
Query: 95 LRPGSEVLDLMSSW---VSHLPQEVSYKRVVGHGLN------AQELAKNPRLEY---FIV 142
+R G VLD+ L RV G ++ A A L F
Sbjct: 59 VRSGDRVLDVGCGIGKPAVRLATARDV-RVTGISISRPQVNQANARATAAGLANRVTFSY 117
Query: 143 KDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193
D L F+ SFDAV S+ ++ + E+ RVL+PGG ++
Sbjct: 118 ADA---MDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIA 165
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 7e-11
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 149 QKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197
+ + S V+ + KV AE RVLKPGG + +
Sbjct: 96 RAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQA 144
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 60.9 bits (147), Expect = 8e-11
Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 30/176 (17%)
Query: 95 LRPGSEVLDLMS---SWVSHLPQEVSYK-RVVGHGLNAQELAK----------------- 133
G+ VLDL V + V +V+G + +L
Sbjct: 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPS 140
Query: 134 --NPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFI 191
N R +++L + S D V+ +F E+ RVL+ GG
Sbjct: 141 RSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELY 200
Query: 192 VSFSNRMFYEKAISAWRDGTAYGRVQL----VVQYFQCVE--GYTNPEIVRKLPAD 241
S + +A +D YG + + + V G+ + +V P D
Sbjct: 201 FSDVYA-DRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVRLVSVGPVD 255
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 1e-10
Identities = 32/181 (17%), Positives = 63/181 (34%), Gaps = 31/181 (17%)
Query: 72 YPRFVTHVDGGFISTLTNLYRQML-----RPGSEVLDL------MSSWVSHLPQEVSYKR 120
Y FV D + + Y +L + VL+ +++ + +
Sbjct: 16 YDSFVQGEDIQY-KEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLA-----GRT 69
Query: 121 VVGHGLNAQ--ELA--KNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEK- 175
V G + + +A K P+ D E S D +V + +L EK
Sbjct: 70 VYGIEPSREMRMIAKEKLPKEFSITEGDF---LSFEVPT-SIDTIVSTYAFHHLTDDEKN 125
Query: 176 -VFAEVFRVLKPGGVFIVS---FSNRMFYEKAISAWRD-GTAYGRVQLVVQYFQCVEGYT 230
A+ ++L GG + + F+++ Y+K + A + G L +Y+ +
Sbjct: 126 VAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQ 185
Query: 231 N 231
Sbjct: 186 T 186
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 2e-10
Identities = 29/201 (14%), Positives = 68/201 (33%), Gaps = 23/201 (11%)
Query: 90 LYRQMLRPGSEVLDL------MSSWVSHLPQEVSYKRVVG-----HGLN-AQELAKNPRL 137
+ + P ++D + ++S + RV+G L A + +
Sbjct: 49 RFELLFNPELPLIDFACGNGTQTKFLSQF-----FPRVIGLDVSKSALEIAAKENTAANI 103
Query: 138 EYFIVKDLNQDQKLEFDHCSFDAVVCAVSV-QYL--QQPEKVFAEVFRVLKPGGVFIVSF 194
Y ++ L +Q + DA + + ++ ++ E + + +L G +
Sbjct: 104 SYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIE 163
Query: 195 SNR--MFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPADSAAAQEDKSPI 252
+ + ++ Y + LV+++ +T +I P +Q +
Sbjct: 164 LGTGCIDFFNSLLEKYGQLPY-ELLLVMEHGIRPGIFTAEDIELYFPDFEILSQGEGLFQ 222
Query: 253 SWLMRLLGFLSGSDPFYAVIA 273
S G + F+AVI
Sbjct: 223 SIHKLPDGNYATPPAFWAVIK 243
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 2e-10
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 132 AKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFI 191
P L F V D + D DAV + ++++PE A + + LK GG F+
Sbjct: 97 QNYPHLH-FDVADA---RNFRVDK-PLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFV 151
Query: 192 VSFSNRMFYEKAISAWRD 209
F + + + A +
Sbjct: 152 AEFGGKGNIKYILEALYN 169
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 5e-10
Identities = 29/168 (17%), Positives = 51/168 (30%), Gaps = 25/168 (14%)
Query: 81 GGFISTLTNLYRQM-LRPGSEVLDLMSSW---VSHLPQEVSYKRVVGHGLN------AQE 130
G +T + L +++ D+ L V ++ G L E
Sbjct: 29 GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNE 87
Query: 131 LAKNPRLE---YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPG 187
A I + L F + D + ++ + E+ E + LK G
Sbjct: 88 NAVKANCADRVKGITGSM---DNLPFQNEELDLIWSEGAIYNIG-FERGMNEWSKYLKKG 143
Query: 188 GVFIVS---FSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVE--GYT 230
G VS + + W D Y + ++ +E GYT
Sbjct: 144 GFIAVSEASWFTSERPAEIEDFWMDA--YPEISVIPTCIDKMERAGYT 189
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 7e-10
Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 22/156 (14%)
Query: 54 TNEGRTKLNTYSDR--DFYAYPRFVTHVDGGFISTLTNLYRQM-LRPGSEVLDLMSSW-- 108
+++ + N Y+D Y + ++ G + + + L S+VLD+ S
Sbjct: 9 SDKTFLENNQYTDEGVKVYEFIFGENYISSGGLEATKKILSDIELNENSKVLDIGSGLGG 68
Query: 109 -VSHLPQEVSYK-RVVGHGLN------AQELAK-NPRLEYFIVKDLNQDQKLEFDHCSFD 159
++ ++ Y G + A E N ++ F D+ EF +FD
Sbjct: 69 GCMYINEK--YGAHTHGIDICSNIVNMANERVSGNNKII-FEANDI---LTKEFPENNFD 122
Query: 160 AVVCAVSVQYLQQP--EKVFAEVFRVLKPGGVFIVS 193
+ ++ L K+F + ++ LKP G +++
Sbjct: 123 LIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLIT 158
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 7e-10
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 150 KLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIV 192
E S D ++ A S + + V +EV R+LK G I+
Sbjct: 68 PKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVII 110
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 7e-10
Identities = 35/190 (18%), Positives = 59/190 (31%), Gaps = 29/190 (15%)
Query: 63 TYSDRDFYAYPRFVTHVD----GGFISTLTNLYRQM-LRPGSEVLDL---MSSWVSHLPQ 114
T D + F ++++ G TL L L S + D+ L
Sbjct: 7 TIHDFELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAG 66
Query: 115 EVSYKRVVGHGLN------AQELAKNPRLE---YFIVKDLNQDQKLEFDHCSFDAVVCAV 165
V+ +V G A+ L+ IV + L F + D +
Sbjct: 67 HVT-GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM---DDLPFRNEELDLIWSEG 122
Query: 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS---FSNRMFYEKAISAWRDGTAYGRVQLVVQY 222
++ + E+ E + LK GG VS + + W D AY + +
Sbjct: 123 AIYNIG-FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMD--AYPEIDTIPNQ 179
Query: 223 FQCVE--GYT 230
+ GY
Sbjct: 180 VAKIHKAGYL 189
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 9e-10
Identities = 28/130 (21%), Positives = 42/130 (32%), Gaps = 20/130 (15%)
Query: 95 LRPGSEVLDLMSSW---VSHLPQEVSYK-RVVGHGLN------AQELAKNPRLEY---FI 141
LRPG V + W + L ++VG + A LA L
Sbjct: 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLH 175
Query: 142 VKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKV---FAEVFRVLKPGGVFIVSFSNRM 198
+D KL+ +D + Y +V + ++ LKPGG + SF
Sbjct: 176 RQDA---WKLDTRE-GYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPP 231
Query: 199 FYEKAISAWR 208
S W
Sbjct: 232 PALSPDSPWD 241
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 1e-09
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 150 KLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197
L S D V+ +++ + EK F E+ R+++ G + +++F R
Sbjct: 87 NLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRDGTIVLLTFDIR 134
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-09
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 129 QELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEK--VFAEVFRVLKP 186
N +++ +I D + K +F+ +D VV A+S+ +L+ +K ++ + +LK
Sbjct: 86 NRFRGNLKVK-YIEADYS---KYDFEE-KYDMVVSALSIHHLEDEDKKELYKRSYSILKE 140
Query: 187 GGVFIVS----FSNRMFYEKAISAWRD 209
G+FI + + WR
Sbjct: 141 SGIFINADLVHGETAFIENLNKTIWRQ 167
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 4e-09
Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 132 AKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPE--KVFAEVFRVLKPGGV 189
+P + F + L + ++ S+ ++ E + ++ GG
Sbjct: 81 QTHPSVT-FHHGTI---TDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGG 136
Query: 190 FIVSF 194
++SF
Sbjct: 137 LLMSF 141
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 5e-09
Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 16/111 (14%)
Query: 95 LRPGSEVLDLMSSW---VSHLPQEVSYKRVVGHGLN------AQELAKNPRLEY---FIV 142
L+ ++ LDL + + L ++ + + +E L
Sbjct: 80 LQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKY 138
Query: 143 KDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193
++ + S+D + + + KVF E RVLKP GV ++
Sbjct: 139 GSF---LEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAIT 186
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 1e-08
Identities = 32/154 (20%), Positives = 49/154 (31%), Gaps = 24/154 (15%)
Query: 95 LRPGSEVLDLMS---SWVSHLPQEVSYKRVVGHGLNAQ--ELAKN---PRLEYFIVKDLN 146
+VL+L S W HL RV +A+ A +E F +DL
Sbjct: 44 GNIRGDVLELASGTGYWTRHLSGLA--DRVTALDGSAEMIAEAGRHGLDNVE-FRQQDL- 99
Query: 147 QDQKLEFDHCSFDAVVCAVSVQYLQQPE--KVFAEVFRVLKPGGVFIVSFSN-------R 197
D +DAV A + ++ + V + PGGV +
Sbjct: 100 --FDWTPDR-QWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQ 156
Query: 198 MFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTN 231
+ A R GR +V+ F+ T
Sbjct: 157 QDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTE 190
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 3e-08
Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 14/116 (12%)
Query: 128 AQELAKNPRLE-YFIVKDLNQDQKLEFD-----HCSFDAVVCAV-SVQYLQQPE------ 174
A + N R E F + + L D FDAV+C S +L +
Sbjct: 95 ALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEH 154
Query: 175 -KVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGY 229
+ +++PGG+ ++ N + A Y + L V
Sbjct: 155 RLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTV 210
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 3e-08
Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 35/118 (29%)
Query: 95 LRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKN----------PRL-----EY 139
L G+++L+L G G A+ + P L
Sbjct: 41 LPAGAKILELGC----------------GAGYQAEAMLAAGFDVDATDGSPELAAEASRR 84
Query: 140 FIVKDLNQD-QKLEFDHCSFDAVVCAVSVQYLQQPE--KVFAEVFRVLKPGGVFIVSF 194
+L+ ++DAV + ++ + E V ++R LKPGG+F S+
Sbjct: 85 LGRPVRTMLFHQLDAID-AYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASY 141
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 3e-08
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 128 AQELAKNPRLEY-FIVKDLNQDQKLEFDHCSFDAVVCAV-SVQYLQQPE--KVFAEVFRV 183
A+ AK L+ F+ D+ ++ F + FDAV ++ Y + + K+F++V
Sbjct: 79 ARRKAKERNLKIEFLQGDV---LEIAFKN-EFDAVTMFFSTIMYFDEEDLRKLFSKVAEA 134
Query: 184 LKPGGVFIVSFSNRMFYEK 202
LKPGGVFI F + +
Sbjct: 135 LKPGGVFITDFPCWFYGGR 153
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 4e-08
Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 44/151 (29%)
Query: 91 YRQMLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAK---------NPR-LEYF 140
+ + PG + D+ G G LA + LE
Sbjct: 27 VLEQVEPGKRIADIG----------------CGTGTATLLLADHYEVTGVDLSEEMLEIA 70
Query: 141 IVKDLNQDQKLEFDHC---------SFDAVVCAV-SVQYLQQPE---KVFAEVFRVLKPG 187
K + ++ ++F DA+ S+ YLQ + F R+L G
Sbjct: 71 QEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDG 130
Query: 188 GVFIVSFSN-----RMFYEKAISAWRDGTAY 213
G + + +F K + + ++Y
Sbjct: 131 GKLLFDVHSPYKMETLFNGKTYATHAEQSSY 161
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 4e-08
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 149 QKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193
K+ + D + A + L +P K E+ RV KP +
Sbjct: 98 NKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAII 142
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 5e-08
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 128 AQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPG 187
A E AK +L++ ++ D+ + ++ FD V+ +++L P V +V +K
Sbjct: 66 AAEQAKE-KLDHVVLGDIETMD-MPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQN 123
Query: 188 GVFIVSFSNRMF 199
GV + S N
Sbjct: 124 GVILASIPNVSH 135
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 7e-08
Identities = 34/210 (16%), Positives = 65/210 (30%), Gaps = 24/210 (11%)
Query: 35 DSNNETKQSSAGKIKREVLTNEGRTKLNTYSDRDFY--AYPRFVTHVDGGF--ISTLTNL 90
D+N +T +S+ K E+ + + Y Y P V+ V GG + +
Sbjct: 21 DTNGKTYRSTDEMWKAELTGDLYDPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIE 80
Query: 91 YRQML------RPGSEVLDL-------MSSWVSHLPQEVSYKRVVGHGLN-AQELAKNPR 136
+ S LD + ++ L V H L A+
Sbjct: 81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP 140
Query: 137 LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKV--FAEVFRVLKPGGVFIVSF 194
+ FI+ + + ++D +V + YL + V F + L P G
Sbjct: 141 VGKFILASM---ETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE 197
Query: 195 SNRMFYEKAISAWRDGTAYGRVQLVVQYFQ 224
+ ++ + D + + F
Sbjct: 198 NCS-TGDRFLVDKEDSSLTRSDIHYKRLFN 226
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 8e-08
Identities = 19/131 (14%), Positives = 37/131 (28%), Gaps = 21/131 (16%)
Query: 70 YAYPRFVTHVDGGFISTLTNLYRQMLRPGSEVLDLMS---SWVSHLPQEVSYKRVVG--- 123
+ + R ++ D T ++L P + VL+ + + R
Sbjct: 23 HPWARVLSGPDPE--LTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA--ARWAAYDF 78
Query: 124 -HGLNAQELAKNPRLEYFIVKDLNQDQKLEF-DHCSFDAVVCAVSVQYLQQPEKVFAEVF 181
L A P + + N +L F +V + P V +
Sbjct: 79 SPELLKLARANAPHADVYEW---NGKGELPAGLGAPFGLIVSR------RGPTSVILRLP 129
Query: 182 RVLKPGGVFIV 192
+ P F+
Sbjct: 130 ELAAPDAHFLY 140
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-07
Identities = 25/135 (18%), Positives = 37/135 (27%), Gaps = 46/135 (34%)
Query: 87 LTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELA-------------- 132
+ +L R S +LD+ G G + +
Sbjct: 30 IADLVRSRTPEASSLLDVAC----------------GTGTHLEHFTKEFGDTAGLELSED 73
Query: 133 -------KNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAV-SVQYLQQPE---KVFAEVF 181
+ P D+ + F AVV SV YL+ E A
Sbjct: 74 MLTHARKRLPDAT-LHQGDM---RDFRLGR-KFSAVVSMFSSVGYLKTTEELGAAVASFA 128
Query: 182 RVLKPGGVFIVSFSN 196
L+PGGV +V
Sbjct: 129 EHLEPGGVVVVEPWW 143
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 2e-07
Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 33/125 (26%)
Query: 95 LRPGSEVLDL----------MSSWVSHLPQEVSYKRVVGHGLN------AQELAKNPRLE 138
L+ E+LD+ ++S V G +N A+ A++P L
Sbjct: 28 LQEDDEILDIGCGSGKISLELASKGYS---------VTGIDINSEAIRLAETAARSPGLN 78
Query: 139 YFIVKDLN---QD-QKLEFDHCSFDAVVCA---VSVQYLQQPEKVFAEVFRVLKPGGVFI 191
++ L F SFD V SV ++ ++ EVFRVLKPG
Sbjct: 79 QKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLY 138
Query: 192 VS-FS 195
+ F
Sbjct: 139 LVEFG 143
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 2e-07
Identities = 22/154 (14%), Positives = 53/154 (34%), Gaps = 22/154 (14%)
Query: 140 FIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPE--KVFAEVFRVLKPGGVFIVSFSNR 197
+ D + K D V+ + V++L ++ + + +K ++ N
Sbjct: 85 VVKSDAIEYLK-SLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNP 143
Query: 198 MFYEKAISAWRDGT---------------AYGRVQLVVQYFQCVEGYTNPEIVRKLPADS 242
I+ + D T G + +++F+ + K+ +++
Sbjct: 144 TSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEFFE---ECEELTKLAKIDSNT 200
Query: 243 AAAQEDKSPISWLMRLLGFLSGSDPFYAVIAYKN 276
+ + + + +L L G YA+IA K
Sbjct: 201 VSEEVIRVINENIEKLNRILFGP-QDYAIIAKKE 233
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 4e-07
Identities = 19/121 (15%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 97 PGSEVLDL---MSSWVSHLPQEVSYKRVVG--HGLNAQELAKNPRLEYFIVKDLNQDQKL 151
V+DL + + L ++ ++++ G + E+A+ RL+ + NQ ++L
Sbjct: 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQE-RLDRLRLPR-NQWERL 86
Query: 152 EFDHCS----------FDAVVCAVSVQYLQQPE--KVFAEVFRVLKPGGVFIVSFSNRMF 199
+ + +DA +++L +F +P V + + N +
Sbjct: 87 QLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIV-TTPNIEY 145
Query: 200 Y 200
Sbjct: 146 N 146
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 4e-07
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 128 AQELAKNPRLEY--FIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPE--KVFAEVFRV 183
+ + L+ V DLN L FD +D ++ V + +L+ + A + R
Sbjct: 70 VERIKSIENLDNLHTRVVDLNN---LTFDR-QYDFILSTVVLMFLEAKTIPGLIANMQRC 125
Query: 184 LKPGGVFIVSF 194
KPGG ++
Sbjct: 126 TKPGGYNLIVA 136
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 4e-07
Identities = 24/167 (14%), Positives = 41/167 (24%), Gaps = 54/167 (32%)
Query: 63 TYSDRDFYA-----YPRFVTHVDGGF---ISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQ 114
D+ Y + + L L R+ + +LD+
Sbjct: 8 AGPQADYSGEIAELYDLVHQGKGKDYHREAADLAALVRRHSPKAASLLDVA--------- 58
Query: 115 EVSYKRVVGHGLNAQELA---------------------KNPRLEYFIVKDLNQDQKLEF 153
G G++ + LA +NP D+ +
Sbjct: 59 -------CGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAV-LHHGDM---RDFSL 107
Query: 154 DHCSFDAVVCAV-SVQYLQQPE---KVFAEVFRVLKPGGVFIVSFSN 196
F AV C S+ +L + P GV +V
Sbjct: 108 GR-RFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWW 153
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 7e-07
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 140 FIVKDLNQDQKLEFDHCSFDAVVCAV-SVQYLQQPE--KVFAEVFRVLKPGGVFIVSFSN 196
+ D+ D F VV + S+ L + + ++A V L+PGG F++S +
Sbjct: 137 LVQGDM---SAFALDK-RFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAM 192
Query: 197 RMFYEKAISAWRDGTAYGR 215
++ R GR
Sbjct: 193 S-EAAESEPLERKQELPGR 210
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 8e-07
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 128 AQELAKNPRLE-YFIVKDLNQDQKLEFDHCSFDAVVCAV-SVQYLQQPE---KVFAEVFR 182
A+ ++ L+ +D+ L + FD + C + S Y+ + K F V
Sbjct: 75 AENKFRSQGLKPRLACQDI---SNLNINRK-FDLITCCLDSTNYIIDSDDLKKYFKAVSN 130
Query: 183 VLKPGGVFIVSFSNRMFYEK 202
LK GGVFI ++ +
Sbjct: 131 HLKEGGVFIFDINSYYKLSQ 150
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-06
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 6/78 (7%)
Query: 132 AKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFI 191
+ P F DL + D + Q++ V +++ L+ GGV
Sbjct: 75 DRLPNTN-FGKADL---ATWKPAQ-KADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLA 129
Query: 192 VSFSNRMFYEKAISAWRD 209
V + E A +
Sbjct: 130 VQMPDN-LQEPTHIAMHE 146
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 4e-06
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 128 AQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPE---KVFAEVFRVL 184
Q + + + D+ Q E FD +V A + YL+ + ++L
Sbjct: 90 CQRTKRWSHISW-AATDILQFSTAE----LFDLIVVAEVLYYLEDMTQMRTAIDNMVKML 144
Query: 185 KPGGVFIVSFSNR 197
PGG + +
Sbjct: 145 APGGHLVFGSARD 157
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 4e-06
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 138 EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193
V D+ ++ + S D V +S+ E RVLKPGG+ V+
Sbjct: 99 PRVTVCDM---AQVPLEDESVDVAVFCLSLMGTN-IRDFLEEANRVLKPGGLLKVA 150
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 5e-06
Identities = 8/69 (11%), Positives = 16/69 (23%), Gaps = 3/69 (4%)
Query: 126 LNAQELAKNPRLEYFIVK--DLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRV 183
+ + + I D D D + + EK +
Sbjct: 80 IKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFD-FEKFQRSAYAN 138
Query: 184 LKPGGVFIV 192
L+ G +
Sbjct: 139 LRKDGTIAI 147
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 7e-06
Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 128 AQELAKNPRLE-YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKP 186
A++LA+ ++ + +L + +++ +V ++++ +V++ LKP
Sbjct: 67 AKQLAQEKGVKITTVQSNLAD---FDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKP 123
Query: 187 GGVFIVSF 194
GGVFI+
Sbjct: 124 GGVFILEG 131
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 7e-06
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 17/110 (15%)
Query: 95 LRPGSEVLDLMSSW---VSHLPQEVSYKRVVGHGLN------AQELAKNPRLE---YFIV 142
P ++D + + RV G L+ A+ R++ V
Sbjct: 115 AGPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRV 173
Query: 143 KDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIV 192
++ FD + A S Y+ +F+E R LK GG ++
Sbjct: 174 CNM---LDTPFDKGAVTASWNNESTMYVDLH-DLFSEHSRFLKVGGRYVT 219
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 9e-06
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 9/101 (8%)
Query: 128 AQELAK--NPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKV--FAEVFRV 183
A+ R+ + L Q + S+D + + +L
Sbjct: 118 AKTYLGEEGKRVRNYFCCGL---QDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGS 174
Query: 184 LKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQ 224
L+P G+ + + M E I D + + +V +
Sbjct: 175 LRPNGIIV--IKDNMAQEGVILDDVDSSVCRDLDVVRRIIC 213
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 9e-06
Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 16/118 (13%)
Query: 97 PGSEVLDL---MSSWVSHLPQEVSYKRVVG-----HGLN-AQELAKNPRLEYFIVKDLNQ 147
+V+DL + +S L ++ S++++ G L A++ K RL K ++
Sbjct: 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISL 88
Query: 148 DQ----KLEFDHCSFDAVVCAVSVQYLQQPE--KVFAEVFRVLKPGGVFIVSFSNRMF 199
Q + +DA +++L + +F +P V + S N+ +
Sbjct: 89 FQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIV-STPNKEY 145
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 1e-05
Identities = 38/169 (22%), Positives = 60/169 (35%), Gaps = 34/169 (20%)
Query: 64 YSDRD----FYAYPRFVTHVD-GGFISTLTNLYRQMLRPGSEVLDL---MSSWVSHLPQE 115
Y + + Y D G S+ L LRP +L L S+ L
Sbjct: 4 YREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYEL-FL 62
Query: 116 VSYKRVVG----HGLNAQELAKNPRLEY--FIVKDLNQDQKLEFDHCSFDAVVC------ 163
+ V + A A + + D+ +KL+F SFD V+
Sbjct: 63 GGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDV---RKLDFPSASFDVVLEKGTLDA 119
Query: 164 ---------AVSVQYLQQPEKVFAEVFRVLKPGGVFI-VSFSNRMFYEK 202
VS + + ++V +EV RVL PGG FI ++ + F +
Sbjct: 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTR 168
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 2e-05
Identities = 15/120 (12%), Positives = 41/120 (34%), Gaps = 14/120 (11%)
Query: 117 SYKRVVGHGLNAQELAKN-PRLEYFIVKDLNQDQKLEFDHCS----------FDAVVCAV 165
S + ++G ++ + LA+ L + K+ + S D C
Sbjct: 745 SLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTCLE 804
Query: 166 SVQYLQQPE--KVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYF 223
++++++ + + +V + P + + S N F + + + + F
Sbjct: 805 VIEHMEEDQACEFGEKVLSLFHPKLLIV-STPNYEFNTILQRSTPETQEENNSEPQLPKF 863
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 3e-05
Identities = 15/118 (12%), Positives = 31/118 (26%), Gaps = 19/118 (16%)
Query: 95 LRPGSEVLDL------MSSWVSHL-------------PQEVSYKRVVGHGLNAQELAKNP 135
++PG ++L++ +S+ ++ + +G N
Sbjct: 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG 100
Query: 136 RLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193
D FD VV A S+ Y + + V+
Sbjct: 101 DRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVA 158
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 5e-05
Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 23/114 (20%)
Query: 95 LRPGSEVLDLMSSW---VSHLPQEVSYKRVVGHGLN--------AQELAK----NPRLEY 139
++PG+ +LDL S + ++ + G G++ A+ A+ + R+
Sbjct: 34 MKPGTRILDLGSGSGEMLCTWARDHG---ITGTGIDMSSLFTAQAKRRAEELGVSERVH- 89
Query: 140 FIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193
FI D + D C + + + LKPGG+ ++
Sbjct: 90 FIHNDA---AGYVANE-KCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIG 139
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 9e-05
Identities = 11/95 (11%), Positives = 27/95 (28%), Gaps = 8/95 (8%)
Query: 129 QELAKNPRLEY--FIVKDLNQDQ-----KLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVF 181
+ +AK LE F + + + +D + + Y++
Sbjct: 100 ELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFH 159
Query: 182 RVLKPGG-VFIVSFSNRMFYEKAISAWRDGTAYGR 215
+L + I+ S ++K +
Sbjct: 160 SLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDD 194
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 2e-04
Identities = 28/144 (19%), Positives = 46/144 (31%), Gaps = 17/144 (11%)
Query: 88 TNLYRQMLRPGSEVLDLMSSWVSHLP--QEVSYKRVVG-----HGLN-AQELAKNPRLEY 139
L R + G VLDL L + G +N A+ A+N + +
Sbjct: 55 ACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRF 114
Query: 140 ---FIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPE----KVFAEVFRVLKPGGVFIV 192
F +D FD + S Y + R L+PGG FI+
Sbjct: 115 KVFFRAQDSYGRHMDLGKE--FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172
Query: 193 SFSNRMFYEKAISAWRDGTAYGRV 216
+ +R + R + ++
Sbjct: 173 TVPSRDVILERYKQGRMSNDFYKI 196
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 3e-04
Identities = 43/212 (20%), Positives = 74/212 (34%), Gaps = 32/212 (15%)
Query: 58 RTKLNTYSDRDFYAYPRFVT--HVDGGFISTLTNLYRQMLRPGSEVLDL---MSSWVSHL 112
R++ S A F+ H + + L ++ + VLD+ +
Sbjct: 44 RSRDPGDSAEMMQARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAF 103
Query: 113 PQEVSYKRVVGHGL--NAQELA--KNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168
+ G + A + A + P++ F V +L F S DA++ +
Sbjct: 104 ADALPEITTFGLDVSKVAIKAAAKRYPQVT-FCVASS---HRLPFSDTSMDAIIRIYAPC 159
Query: 169 YLQQPEKVFAEVFRVLKPGGVFI-VSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVE 227
E+ RV+KPGG I + R E G Y V L + + +E
Sbjct: 160 -------KAEELARVVKPGGWVITATPGPRHLME------LKGLIYNEVHLHAPHAEQLE 206
Query: 228 GYTNPEIVR-----KLPADSAAAQEDKSPISW 254
G+T + +L D A A +P +W
Sbjct: 207 GFTLQQSAELCYPMRLRGDEAVALLQMTPFAW 238
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 3e-04
Identities = 39/290 (13%), Positives = 75/290 (25%), Gaps = 97/290 (33%)
Query: 19 RTKTKTLQPKIVSTLN---DSNNETKQSSAGKIKREVLTNEGRTKLNTY-SDRDFYAYPR 74
+ +++ L D N ++ + IK + + +L + Y
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR--IHSIQAELRRLLKSKP---YEN 245
Query: 75 ----------------F-------VTHVDGGFISTLTNLYRQ-----MLRPG---SEVLD 103
F +T L+ EV
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 104 LMSSWVSH----LPQEVSYKRVVGH----GLNAQELAKNP-RLEYFIVKDLNQDQKLEFD 154
L+ ++ LP+EV + + + A+ + + + K +N D+
Sbjct: 306 LLLKYLDCRPQDLPREV----LTTNPRRLSIIAESIRDGLATWDNW--KHVNCDKLTT-- 357
Query: 155 HCSFDAVVCAVSVQYLQQPE--KVFAE--VFRVLKPGGVFIVSFSNRMFYEKAISA-WRD 209
+ S+ L+ E K+F VF P I +S W D
Sbjct: 358 -------IIESSLNVLEPAEYRKMFDRLSVF----PPSAHIP--------TILLSLIWFD 398
Query: 210 GTAYGRVQLVVQYFQCVEGYTNPEIVRKLPADSAAAQEDKSPISWLMRLL 259
V +V KL S ++ K + +
Sbjct: 399 VI-----------KSDVM-----VVVNKLHKYSLVEKQPKESTISIPSIY 432
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A Length = 176 | Back alignment and structure |
|---|
Score = 38.7 bits (89), Expect = 6e-04
Identities = 33/189 (17%), Positives = 62/189 (32%), Gaps = 28/189 (14%)
Query: 95 LRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFD 154
+ G V + W P E V Q L N V+++ Q +
Sbjct: 10 ISAGQFVAVV---WDKSSPVEALKGLVD----KLQALTGNEGR--VSVENIKQLLQSAHK 60
Query: 155 HCSFDAVVC-AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAY 213
SFD ++ V ++ AE+ R+L+PGG + ++ + D +
Sbjct: 61 ESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFL--------KEPVETAVDNNSK 112
Query: 214 GRVQLVVQYFQCVEGYTNPEIVRKLPADSAAAQEDKSPISWLMRLLGFLSGSDPFYAVIA 273
+ + + G + +++ P Q + LG S + F +
Sbjct: 113 VKTASKLCSALTLSGLVEVKELQREPLTPEEVQS-------VREHLGHESDNLLFVQITG 165
Query: 274 YKNFKPVYE 282
KP +E
Sbjct: 166 K---KPNFE 171
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 39.6 bits (92), Expect = 7e-04
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 128 AQELAKNPRLE-YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPE--KVFAEVFRVL 184
E + L + D+N ++D +V V +L + + +
Sbjct: 158 LNETKEKENLNISTALYDINA---ANIQE-NYDFIVSTVVFMFLNRERVPSIIKNMKEHT 213
Query: 185 KPGGVFIVSFSNR 197
GG ++ +
Sbjct: 214 NVGGYNLIVAAMS 226
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 282 | |||
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.83 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.8 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.79 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.77 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.77 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.76 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.75 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.75 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.74 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.72 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.72 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.71 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.71 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.7 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.7 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.7 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.7 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.7 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.69 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.69 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.69 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.69 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.69 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.69 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.69 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.69 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.68 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.68 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.68 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.68 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.67 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.67 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.67 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.67 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.66 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.66 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.66 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.66 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.66 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.66 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.65 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.65 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.65 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.65 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.64 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.64 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.63 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.63 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.63 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.63 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.63 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.63 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.62 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.62 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.62 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.62 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.61 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.61 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.61 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.61 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.61 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.61 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.61 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.6 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.6 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.59 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.58 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.58 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.57 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.57 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.57 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.57 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.56 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.56 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.56 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.56 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.55 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.53 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.53 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.52 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.52 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.51 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.51 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.5 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.49 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.49 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.49 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.47 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.46 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.46 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.46 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.45 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.44 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.44 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.44 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.44 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.44 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.44 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.44 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.44 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.44 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.43 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.43 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.42 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.42 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.42 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.41 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.41 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.4 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.4 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.4 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.4 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.39 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.39 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.38 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.38 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.37 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.37 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.37 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.37 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.37 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.36 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.36 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.36 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.35 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.34 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.33 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.33 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.33 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.33 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.33 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.33 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.33 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.33 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.32 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.31 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.31 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.3 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.3 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.29 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.28 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.28 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.28 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.28 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.28 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.28 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.27 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.27 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.27 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.26 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.26 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.26 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.26 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.26 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.26 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.26 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.26 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.26 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.25 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.25 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.25 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.25 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.25 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.24 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.24 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.24 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.24 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.24 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.23 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.23 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.23 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.22 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.22 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.22 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.21 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.21 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.21 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.2 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.19 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.19 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.19 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.19 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.19 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.18 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.18 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.15 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.15 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.14 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.14 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.13 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.11 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.11 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.09 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.09 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.08 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.08 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.07 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.07 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.07 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.07 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.07 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.07 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.06 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.06 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.05 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.05 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.05 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.05 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.04 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.03 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.02 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.02 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.02 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.02 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.02 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.0 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.0 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.99 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.99 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.98 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.96 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.96 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.95 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.94 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.93 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.92 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.91 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.9 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.9 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.9 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.89 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.89 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.88 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.87 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.86 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.85 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.85 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.84 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.83 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.83 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.83 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.81 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.78 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.75 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.75 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.72 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.67 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.64 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.62 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.62 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.6 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.59 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.53 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.48 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.47 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.42 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.37 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.36 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.35 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.34 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.33 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.32 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.31 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.27 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.21 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.21 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.14 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.1 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.07 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.02 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.01 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.0 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.0 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.98 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.96 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.96 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.94 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.92 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.92 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.88 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.83 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.82 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.82 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.78 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.61 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.55 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.5 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.46 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.39 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.36 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.31 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.26 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.06 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.99 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.84 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 96.71 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.64 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.47 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.21 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.9 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.45 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.36 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.62 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.32 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 94.22 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.9 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.87 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.76 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 93.57 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 93.54 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.45 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.22 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 93.0 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 92.99 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 92.89 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 92.83 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 92.82 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 92.73 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 92.71 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 92.6 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 92.6 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 92.31 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 92.17 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 92.16 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 92.09 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 92.01 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 92.01 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 91.87 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 91.81 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 91.72 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 91.61 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 91.48 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 91.37 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 91.37 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 91.36 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 91.22 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 90.99 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 90.93 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 90.78 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 90.58 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 90.5 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 90.48 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 90.36 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 90.26 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 90.22 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 90.18 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 90.13 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 90.05 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 90.04 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 90.03 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 90.0 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 89.89 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 89.78 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 89.63 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 89.51 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 89.35 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 89.32 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 89.27 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 88.83 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 88.53 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 88.09 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 88.09 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 87.84 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 87.77 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 87.74 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 87.47 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 87.03 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 86.47 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 86.0 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 85.54 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 85.48 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 85.32 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 85.24 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 84.0 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 83.43 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 83.41 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 82.68 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 81.16 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 81.08 | |
| 2km1_A | 136 | Protein DRE2; yeast, antiapoptotic, protein bindin | 80.9 |
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=158.97 Aligned_cols=110 Identities=22% Similarity=0.391 Sum_probs=87.8
Q ss_pred HHHHhhCC--CCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC-----CCceEEeecccccCCCCCCCcee
Q 023470 89 NLYRQMLR--PGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR-----LEYFIVKDLNQDQKLEFDHCSFD 159 (282)
Q Consensus 89 ~~~~~~~~--~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~-----~~~~~~~d~~~~~~l~~~~~s~D 159 (282)
..+...+. ++.+|||+|||+|....... ...+|+|+|+|+.|++.++. ...+..+|+ ..+++++++||
T Consensus 34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~---~~~~~~~~~fD 110 (253)
T 3g5l_A 34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAI---EDIAIEPDAYN 110 (253)
T ss_dssp HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCG---GGCCCCTTCEE
T ss_pred HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcch---hhCCCCCCCeE
Confidence 34445554 67899999999886543322 33399999999999976542 345677777 67888889999
Q ss_pred EEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHH
Q 023470 160 AVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYE 201 (282)
Q Consensus 160 ~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~ 201 (282)
+|++..+++|++++..++++++++|||||.++++++++....
T Consensus 111 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 152 (253)
T 3g5l_A 111 VVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTA 152 (253)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHS
T ss_pred EEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCcccc
Confidence 999999999999999999999999999999999988765433
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-19 Score=153.63 Aligned_cols=161 Identities=16% Similarity=0.261 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchh---hhhc--CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccc
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHL---PQEV--SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQD 148 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~---~~~~--~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~ 148 (282)
..+.+..++...++++.+|||||||+|... +... ++++|+|+|+|+.|++.|++ ...+..+|+
T Consensus 56 ~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~--- 132 (261)
T 4gek_A 56 IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDI--- 132 (261)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCT---
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccc---
Confidence 344455566677889999999999998643 3322 56799999999999976642 235666776
Q ss_pred cCCCCCCCceeEEEecchhhccCCH--HHHHHHHHHcccCCcEEEEEEcCc----hhHH---HHHHhhhcCCCCcchhhH
Q 023470 149 QKLEFDHCSFDAVVCAVSVQYLQQP--EKVFAEVFRVLKPGGVFIVSFSNR----MFYE---KAISAWRDGTAYGRVQLV 219 (282)
Q Consensus 149 ~~l~~~~~s~D~v~~~~~l~~~~~~--~~~l~~~~r~LkpgG~li~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~ 219 (282)
.++++ ++||+|++++++||+++. ..+|++++|+|||||.|+++.... .... .....+....++......
T Consensus 133 ~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~ 210 (261)
T 4gek_A 133 RDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEIS 210 (261)
T ss_dssp TTCCC--CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTH
T ss_pred ccccc--cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 66765 469999999999999754 468999999999999999874322 1111 111112112222221111
Q ss_pred H--HHHH-hhCCCCchHHhhcCCCCccccccc
Q 023470 220 V--QYFQ-CVEGYTNPEIVRKLPADSAAAQED 248 (282)
Q Consensus 220 ~--~~~~-~~~gF~~~ei~~~~~~~g~~~~~~ 248 (282)
. ..+. ...-++..+....+..+||...+.
T Consensus 211 ~~~~~l~~~~~~~s~~~~~~~L~~AGF~~ve~ 242 (261)
T 4gek_A 211 QKRSMLENVMLTDSVETHKARLHKAGFEHSEL 242 (261)
T ss_dssp HHHHHHHHHCCCBCHHHHHHHHHHHTCSEEEE
T ss_pred HHHhhhcccccCCCHHHHHHHHHHcCCCeEEE
Confidence 1 1111 123466677788888888876553
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.1e-19 Score=150.48 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=86.0
Q ss_pred HHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCC--ceEEeecccccCCCCCCCceeEEEe
Q 023470 87 LTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLE--YFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 87 ~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~--~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
+.+.+....+.+.+|||||||+|....... .+.+|+|+|+|+.|++.++... .+.+++. +++++++++||+|+|
T Consensus 29 l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~~~v~~~~~~~---e~~~~~~~sfD~v~~ 105 (257)
T 4hg2_A 29 LFRWLGEVAPARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRHPRVTYAVAPA---EDTGLPPASVDVAIA 105 (257)
T ss_dssp HHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCCTTEEEEECCT---TCCCCCSSCEEEEEE
T ss_pred HHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhcCCceeehhhh---hhhcccCCcccEEEE
Confidence 344455566677899999999986544332 5689999999999999887654 5666676 789999999999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
..++||+ +++.++++++|+|||||.|++...
T Consensus 106 ~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 106 AQAMHWF-DLDRFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp CSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeehhHh-hHHHHHHHHHHHcCCCCEEEEEEC
Confidence 9999888 688999999999999999987643
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=147.17 Aligned_cols=110 Identities=23% Similarity=0.326 Sum_probs=90.6
Q ss_pred HHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC-----CceEEeecccccCCCCCCCcee
Q 023470 86 TLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL-----EYFIVKDLNQDQKLEFDHCSFD 159 (282)
Q Consensus 86 ~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~-----~~~~~~d~~~~~~l~~~~~s~D 159 (282)
.+...+...++++.+|||||||+|....... .+.+|+|+|+|+.+++.++.. ..+...|+ ..+++++++||
T Consensus 42 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~---~~~~~~~~~fD 118 (242)
T 3l8d_A 42 TIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDL---SSLPFENEQFE 118 (242)
T ss_dssp THHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCBTTEEEEECBT---TBCSSCTTCEE
T ss_pred HHHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcccCCceEEEcch---hcCCCCCCCcc
Confidence 3555666677889999999999886543322 467999999999999766543 35677777 67788889999
Q ss_pred EEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 160 AVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 160 ~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
+|++..+++|++++..++++++++|||||.++++++++.
T Consensus 119 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 157 (242)
T 3l8d_A 119 AIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPT 157 (242)
T ss_dssp EEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred EEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCc
Confidence 999999999999999999999999999999999986653
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=147.09 Aligned_cols=114 Identities=10% Similarity=0.123 Sum_probs=88.3
Q ss_pred HHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC----CCceEEeecccccCCCCCCCcee
Q 023470 85 STLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR----LEYFIVKDLNQDQKLEFDHCSFD 159 (282)
Q Consensus 85 ~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~----~~~~~~~d~~~~~~l~~~~~s~D 159 (282)
..+.+.+... .++.+|||||||+|....... .+.+|+|+|+|+.|++.++. ...+...|+ .++ .++++||
T Consensus 31 ~~~~~~l~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~---~~~-~~~~~fD 105 (250)
T 2p7i_A 31 PFMVRAFTPF-FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRF---EDA-QLPRRYD 105 (250)
T ss_dssp HHHHHHHGGG-CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCG---GGC-CCSSCEE
T ss_pred HHHHHHHHhh-cCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhCCeEEEEccH---HHc-CcCCccc
Confidence 3444444433 356789999999987654433 45689999999999976543 345667776 444 4678999
Q ss_pred EEEecchhhccCCHHHHHHHHH-HcccCCcEEEEEEcCchhHHHH
Q 023470 160 AVVCAVSVQYLQQPEKVFAEVF-RVLKPGGVFIVSFSNRMFYEKA 203 (282)
Q Consensus 160 ~v~~~~~l~~~~~~~~~l~~~~-r~LkpgG~li~~~~~~~~~~~~ 203 (282)
+|++.++++|++++..++++++ |+|||||.+++++++.......
T Consensus 106 ~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~ 150 (250)
T 2p7i_A 106 NIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQ 150 (250)
T ss_dssp EEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHH
T ss_pred EEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHH
Confidence 9999999999999999999999 9999999999999887655443
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.9e-19 Score=149.47 Aligned_cols=141 Identities=13% Similarity=0.055 Sum_probs=101.6
Q ss_pred hCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC--CCCCCceeEEEecchhhcc
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL--EFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l--~~~~~s~D~v~~~~~l~~~ 170 (282)
.++++.+|||||||+|....... .+.+|+|+|+|+.|++.++....+...|. .++ ++++++||+|+|..+++|+
T Consensus 38 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~d~---~~~~~~~~~~~fD~i~~~~~l~~~ 114 (240)
T 3dli_A 38 YFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGKFNVVKSDA---IEYLKSLPDKYLDGVMISHFVEHL 114 (240)
T ss_dssp GTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTTSEEECSCH---HHHHHTSCTTCBSEEEEESCGGGS
T ss_pred hhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhhcceeeccH---HHHhhhcCCCCeeEEEECCchhhC
Confidence 34577899999999887543322 36789999999999988877766666666 343 6778999999999999999
Q ss_pred CC--HHHHHHHHHHcccCCcEEEEEEcCchhHHHHHHhhhcCCCCcc--hhhHHHHHHhhCCCCchHHhhcC
Q 023470 171 QQ--PEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGR--VQLVVQYFQCVEGYTNPEIVRKL 238 (282)
Q Consensus 171 ~~--~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~gF~~~ei~~~~ 238 (282)
++ ...++++++++|||||.+++.+++..........|........ ...+...+ ..+||+..++....
T Consensus 115 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~aGf~~~~~~~~~ 185 (240)
T 3dli_A 115 DPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFIL-EYLGFRDVKIEFFE 185 (240)
T ss_dssp CGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHH-HHHTCEEEEEEEEC
T ss_pred CcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHH-HHCCCeEEEEEEec
Confidence 94 4899999999999999999999987666555544432222111 12222222 33788876655443
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-17 Score=136.94 Aligned_cols=109 Identities=24% Similarity=0.322 Sum_probs=90.4
Q ss_pred HHHHHHHhhCCCCCeEEEeCCcccchhhhhcCCC-eEEEEcCCHHHHHhCCC---CCceEEeecccccCCCCCCCceeEE
Q 023470 86 TLTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSYK-RVVGHGLNAQELAKNPR---LEYFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 86 ~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~~~~-~v~giD~s~~~l~~~~~---~~~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
.....+...+.++.+|||+|||+|...... +. +++|+|+|+.|++.++. ...+...|+ ..+++++++||+|
T Consensus 25 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~---~~~~~~~~~fD~v 99 (211)
T 2gs9_A 25 EEERALKGLLPPGESLLEVGAGTGYWLRRL--PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWG---EALPFPGESFDVV 99 (211)
T ss_dssp HHHHHHHTTCCCCSEEEEETCTTCHHHHHC--CCSEEEEECCCHHHHHHHHHHCTTSEEECCCT---TSCCSCSSCEEEE
T ss_pred HHHHHHHHhcCCCCeEEEECCCCCHhHHhC--CCCeEEEEeCCHHHHHHHHHhCCCcEEEEccc---ccCCCCCCcEEEE
Confidence 344556666668889999999998766554 45 99999999999976653 345666776 6788888999999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCchh
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMF 199 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~ 199 (282)
++..+++|++++..+++++.++|||||.++++++++..
T Consensus 100 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 137 (211)
T 2gs9_A 100 LLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALS 137 (211)
T ss_dssp EEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred EEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence 99999999999999999999999999999999887643
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-19 Score=149.77 Aligned_cols=100 Identities=24% Similarity=0.387 Sum_probs=81.9
Q ss_pred CCCeEEEeCCcccchhhhhc-CCC-eEEEEcCCHHHHHhCCCC-----CceEEeecccccCCCCCCCceeEEEecchhhc
Q 023470 97 PGSEVLDLMSSWVSHLPQEV-SYK-RVVGHGLNAQELAKNPRL-----EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~-~~~-~v~giD~s~~~l~~~~~~-----~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~ 169 (282)
++.+|||||||+|....... .+. +|+|+|+|+.|++.++.. ..+...|+ ..+++++++||+|++..+++|
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l~~ 119 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADL---DKLHLPQDSFDLAYSSLALHY 119 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCG---GGCCCCTTCEEEEEEESCGGG
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcCh---hhccCCCCCceEEEEeccccc
Confidence 67899999999886543322 344 999999999999765432 35566666 567777889999999999999
Q ss_pred cCCHHHHHHHHHHcccCCcEEEEEEcCchh
Q 023470 170 LQQPEKVFAEVFRVLKPGGVFIVSFSNRMF 199 (282)
Q Consensus 170 ~~~~~~~l~~~~r~LkpgG~li~~~~~~~~ 199 (282)
++++..++++++++|||||.++++++++..
T Consensus 120 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 149 (243)
T 3bkw_A 120 VEDVARLFRTVHQALSPGGHFVFSTEHPIY 149 (243)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred cchHHHHHHHHHHhcCcCcEEEEEeCCccc
Confidence 999999999999999999999999887643
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=138.44 Aligned_cols=162 Identities=12% Similarity=0.043 Sum_probs=110.0
Q ss_pred CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC----CCceEEeecccccCCCCCCCceeEEEecchhhccC
Q 023470 97 PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR----LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~----~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~ 171 (282)
++.+|||+|||+|....... .+.+|+|+|+|+.|++.++. ...+..+|+ ..++++ ++||+|++..+++|++
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~---~~~~~~-~~fD~v~~~~~l~~~~ 120 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDF---LSFEVP-TSIDTIVSTYAFHHLT 120 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSCTTCCEESCCS---SSCCCC-SCCSEEEEESCGGGSC
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCCceEEEeCCh---hhcCCC-CCeEEEEECcchhcCC
Confidence 67899999999887544332 46899999999999876543 356777777 677776 8999999999999999
Q ss_pred CHHH--HHHHHHHcccCCcEEEEEEcCchhHHHHH--HhhhcCCCCcchhhHHHHHHhhCCCCchHHhhcCCCCcccccc
Q 023470 172 QPEK--VFAEVFRVLKPGGVFIVSFSNRMFYEKAI--SAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPADSAAAQE 247 (282)
Q Consensus 172 ~~~~--~l~~~~r~LkpgG~li~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~gF~~~ei~~~~~~~g~~~~~ 247 (282)
++.. +++++.++|||||.+++..++........ ..+.....+... ........-++..++...+..+||....
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 197 (220)
T 3hnr_A 121 DDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQL---ANDLQTEYYTRIPVMQTIFENNGFHVTF 197 (220)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHH---HHHHHHSCCCBHHHHHHHHHHTTEEEEE
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccc---hhhcchhhcCCHHHHHHHHHHCCCEEEE
Confidence 8877 99999999999999999976543222211 111111122111 1111122334667888888888886654
Q ss_pred ccCchHHHHHHhccCCCCCCeEEEEEeecCcc
Q 023470 248 DKSPISWLMRLLGFLSGSDPFYAVIAYKNFKP 279 (282)
Q Consensus 248 ~~~~~~~l~~~~~~~~~~~~~~~v~~~k~~~~ 279 (282)
.. .....|++.+.|..-|
T Consensus 198 ~~--------------~~~~~w~~~~~~~~~~ 215 (220)
T 3hnr_A 198 TR--------------LNHFVWVMEATKQLEH 215 (220)
T ss_dssp EE--------------CSSSEEEEEEEECSCC
T ss_pred ee--------------ccceEEEEeehhhhhh
Confidence 32 2255666666665544
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=145.24 Aligned_cols=110 Identities=21% Similarity=0.252 Sum_probs=86.8
Q ss_pred HHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCC-CCC
Q 023470 87 LTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLE-FDH 155 (282)
Q Consensus 87 ~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~-~~~ 155 (282)
+..++.....++.+|||||||+|....... .+.+|+|+|+|+.|++.++. ...+..+|+ ..++ +.+
T Consensus 58 l~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~ 134 (285)
T 4htf_A 58 LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAA---QDVASHLE 134 (285)
T ss_dssp HHHHHHHTCSSCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCG---GGTGGGCS
T ss_pred HHHHHHhcCCCCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCH---HHhhhhcC
Confidence 444455444567799999999887544322 47799999999999976542 234667776 5555 678
Q ss_pred CceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCchh
Q 023470 156 CSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMF 199 (282)
Q Consensus 156 ~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~ 199 (282)
++||+|++..+++|++++..+++++.++|||||.+++.+++...
T Consensus 135 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (285)
T 4htf_A 135 TPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHG 178 (285)
T ss_dssp SCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHH
T ss_pred CCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCch
Confidence 99999999999999999999999999999999999999887543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.72 E-value=8.9e-18 Score=143.81 Aligned_cols=98 Identities=23% Similarity=0.363 Sum_probs=80.3
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
..++.+|||||||+|....... ...+|+|+|+|+.|++.++. ...+.++|+ ..+++++++||+|++++
T Consensus 35 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~---~~l~~~~~~fD~V~~~~ 111 (260)
T 1vl5_A 35 LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA---EQMPFTDERFHIVTCRI 111 (260)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC----CCCSCTTCEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH---HhCCCCCCCEEEEEEhh
Confidence 3478899999999886543322 34599999999999976542 245677777 77888899999999999
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+++|++|+..++++++|+|||||.+++..+
T Consensus 112 ~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 112 AAHHFPNPASFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp CGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhHhcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 999999999999999999999999998643
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.1e-17 Score=134.82 Aligned_cols=105 Identities=16% Similarity=0.248 Sum_probs=85.2
Q ss_pred HHHHHHhhCCCCCeEEEeCCcccchhhhhcCCCeEEEEcCCHHHHHhCCC-CCceEEeecccccCCCCCCCceeEEEecc
Q 023470 87 LTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPR-LEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 87 ~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~~~~~v~giD~s~~~l~~~~~-~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
....+....+ +.+|||+|||+|......... +|+|+|+.|++.++. ...+...++ ..+++++++||+|++..
T Consensus 38 ~~~~l~~~~~-~~~vLDiG~G~G~~~~~l~~~---~~vD~s~~~~~~a~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~ 110 (219)
T 1vlm_A 38 ELQAVKCLLP-EGRGVEIGVGTGRFAVPLKIK---IGVEPSERMAEIARKRGVFVLKGTA---ENLPLKDESFDFALMVT 110 (219)
T ss_dssp HHHHHHHHCC-SSCEEEETCTTSTTHHHHTCC---EEEESCHHHHHHHHHTTCEEEECBT---TBCCSCTTCEEEEEEES
T ss_pred HHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHH---hccCCCHHHHHHHHhcCCEEEEccc---ccCCCCCCCeeEEEEcc
Confidence 3344555554 889999999998766554333 999999999976654 345667776 66788888999999999
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
+++|++++..+++++.++|||||.+++.++++.
T Consensus 111 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 143 (219)
T 1vlm_A 111 TICFVDDPERALKEAYRILKKGGYLIVGIVDRE 143 (219)
T ss_dssp CGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred hHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCc
Confidence 999999999999999999999999999987654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-17 Score=135.75 Aligned_cols=98 Identities=11% Similarity=0.064 Sum_probs=82.1
Q ss_pred CCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC---CCceEEeecccccCCCCCCCceeEEEecchhhccC--
Q 023470 98 GSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR---LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ-- 171 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~---~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~-- 171 (282)
+.+|||+|||+|....... .+.+|+|+|+|+.|++.++. ...+..+|+ ..+++++++||+|++..+++|++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTI---TDLSDSPKRWAGLLAWYSLIHMGPG 118 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCTTSEEECCCG---GGGGGSCCCEEEEEEESSSTTCCTT
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCCCeEEeCcc---cccccCCCCeEEEEehhhHhcCCHH
Confidence 7889999999887543322 46799999999999976653 356777777 67788889999999999999997
Q ss_pred CHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 172 QPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 172 ~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
++..+++++.++|||||.+++++++..
T Consensus 119 ~~~~~l~~~~~~L~pgG~l~i~~~~~~ 145 (203)
T 3h2b_A 119 ELPDALVALRMAVEDGGGLLMSFFSGP 145 (203)
T ss_dssp THHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 889999999999999999999987653
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-18 Score=146.85 Aligned_cols=163 Identities=11% Similarity=0.095 Sum_probs=97.7
Q ss_pred CCCCCeEEEeCCcccchhhhh-c-CCCeEEEEcCCHHHHHhCCCC-----------------------------------
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE-V-SYKRVVGHGLNAQELAKNPRL----------------------------------- 137 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~-~-~~~~v~giD~s~~~l~~~~~~----------------------------------- 137 (282)
..++.+|||||||+|.+.... . ...+|+|+|+|+.|++.+++.
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 346788999999987543321 2 334799999999999754320
Q ss_pred --C-ceEEeecccccCCCC---CCCceeEEEecchhhcc----CCHHHHHHHHHHcccCCcEEEEEEcCc-hhHHHHHHh
Q 023470 138 --E-YFIVKDLNQDQKLEF---DHCSFDAVVCAVSVQYL----QQPEKVFAEVFRVLKPGGVFIVSFSNR-MFYEKAISA 206 (282)
Q Consensus 138 --~-~~~~~d~~~~~~l~~---~~~s~D~v~~~~~l~~~----~~~~~~l~~~~r~LkpgG~li~~~~~~-~~~~~~~~~ 206 (282)
. .+..+|+.. ..++ ..++||+|++++++||+ ++...++++++|+|||||.|+++.... ..+.
T Consensus 133 ~~i~~~~~~D~~~--~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~----- 205 (263)
T 2a14_A 133 AAVKRVLKCDVHL--GNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYM----- 205 (263)
T ss_dssp HHEEEEEECCTTS--SSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE-----
T ss_pred hhhheEEeccccC--CCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccce-----
Confidence 0 155666632 1232 35789999999999996 345679999999999999999985321 1100
Q ss_pred hhcCCCCcchhhHHHHHHhhCCCCchHHhhcCCCCccccccccCchHHHHHHhccCCCCCCeEEEEEeecCcc
Q 023470 207 WRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPADSAAAQEDKSPISWLMRLLGFLSGSDPFYAVIAYKNFKP 279 (282)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~gF~~~ei~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~k~~~~ 279 (282)
+. ...+. ...|+..++...+..+||.......+.. ..-..+....+++++.++|..-|
T Consensus 206 ~g-~~~~~-----------~~~~~~~~l~~~l~~aGF~i~~~~~~~~---~~~~~~~~~~~~~~~~a~K~~~~ 263 (263)
T 2a14_A 206 VG-KREFS-----------CVALEKGEVEQAVLDAGFDIEQLLHSPQ---SYSVTNAANNGVCCIVARKKPGP 263 (263)
T ss_dssp ET-TEEEE-----------CCCCCHHHHHHHHHHTTEEEEEEEEECC---CCCTTTCCCCCEEEEEEEECC--
T ss_pred eC-CeEee-----------ccccCHHHHHHHHHHCCCEEEEEeeccc---ccccccCCCCceEEEEEEecCCC
Confidence 00 00000 0135556666666666665444322110 00111112357888899886543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-17 Score=142.79 Aligned_cols=97 Identities=20% Similarity=0.108 Sum_probs=80.6
Q ss_pred CCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
++++.+|||||||+|...... .+..+|+|+|+|+.+++.++. ...+...|+ .++++++++||+|++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~i~~ 120 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM---DDLPFRNEELDLIWS 120 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCCCCTTCEEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh---hhCCCCCCCEEEEEE
Confidence 457889999999988654332 256799999999999865432 246677777 678888899999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
..+++|+ ++..+++++.++|||||.+++..+
T Consensus 121 ~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 121 EGAIYNI-GFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp SSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred cCCceec-CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9999999 899999999999999999998865
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-17 Score=145.58 Aligned_cols=100 Identities=10% Similarity=0.075 Sum_probs=73.0
Q ss_pred CCCeEEEeCCcccch-------hhhhcCCCeE--EEEcCCHHHHHhCCCC-------C--ceEEeecccccCC------C
Q 023470 97 PGSEVLDLMSSWVSH-------LPQEVSYKRV--VGHGLNAQELAKNPRL-------E--YFIVKDLNQDQKL------E 152 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~-------~~~~~~~~~v--~giD~s~~~l~~~~~~-------~--~~~~~d~~~~~~l------~ 152 (282)
++.+|||||||+|.. +....+...| +|+|+|++|++.++.. . .+....... +++ +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~ 130 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS-SEYQSRMLEK 130 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCH-HHHHHHHHTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecch-hhhhhhhccc
Confidence 567899999999852 1222245644 9999999999754321 1 222222211 223 2
Q ss_pred CCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 153 FDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 153 ~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+++++||+|++.+++||++|+..++++++|+|||||++++...+.
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 567899999999999999999999999999999999999876554
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.1e-17 Score=141.27 Aligned_cols=99 Identities=19% Similarity=0.144 Sum_probs=82.2
Q ss_pred CCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
+.++.+|||||||+|....... .+.+|+|+|+|+.|++.++. ...+..+|+ ..+++++++||+|++
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~ 156 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF---LEIPCEDNSYDFIWS 156 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT---TSCSSCTTCEEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc---ccCCCCCCCEeEEEe
Confidence 4578899999999886544322 25699999999999865542 346677777 778888899999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
..+++|++++..++++++|+|||||++++..+.
T Consensus 157 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 189 (297)
T 2o57_A 157 QDAFLHSPDKLKVFQECARVLKPRGVMAITDPM 189 (297)
T ss_dssp ESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cchhhhcCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 999999999999999999999999999998654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-17 Score=143.51 Aligned_cols=155 Identities=21% Similarity=0.264 Sum_probs=104.5
Q ss_pred HHHHhhCCCCCeEEEeCCcccchhhh----hcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCC
Q 023470 89 NLYRQMLRPGSEVLDLMSSWVSHLPQ----EVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDH 155 (282)
Q Consensus 89 ~~~~~~~~~~~~vLDiGcG~~~~~~~----~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~ 155 (282)
..+...+.++.+|||||||+|..... ..++.+|+|+|+|+.+++.++.+ ..+..+|+ .+++++
T Consensus 110 ~~l~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~- 185 (305)
T 3ocj_A 110 RALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDA---WKLDTR- 185 (305)
T ss_dssp HHHHHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCG---GGCCCC-
T ss_pred HHHHhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECch---hcCCcc-
Confidence 44455678899999999998875443 23678999999999998765421 35677777 677776
Q ss_pred CceeEEEecchhhccCCHHH---HHHHHHHcccCCcEEEEEEcCchhHHHHHHhhhcCCCCcc-hhhHHHH-HHhh----
Q 023470 156 CSFDAVVCAVSVQYLQQPEK---VFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGR-VQLVVQY-FQCV---- 226 (282)
Q Consensus 156 ~s~D~v~~~~~l~~~~~~~~---~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~---- 226 (282)
++||+|+++.+++|++++.. ++++++++|||||+++++...+.........|.-. .+.. ......+ +...
T Consensus 186 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~ 264 (305)
T 3ocj_A 186 EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQ-AIDPHDLQLQQLVFTRLIQPR 264 (305)
T ss_dssp SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGG-GSCHHHHHHHHHHHHHTTCCS
T ss_pred CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceee-ccccchhhhhhhHHHHHHhhh
Confidence 89999999999999998887 79999999999999999865432222222223210 1111 0011111 1111
Q ss_pred --CCCCchHHhhcCCCCccccccc
Q 023470 227 --EGYTNPEIVRKLPADSAAAQED 248 (282)
Q Consensus 227 --~gF~~~ei~~~~~~~g~~~~~~ 248 (282)
.-++..++...+..+||.....
T Consensus 265 ~~~~~~~~~~~~~l~~aGF~~v~~ 288 (305)
T 3ocj_A 265 WNALRTHAQTRAQLEEAGFTDLRF 288 (305)
T ss_dssp CCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred hhccCCHHHHHHHHHHCCCEEEEE
Confidence 1256777888888888866544
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.69 E-value=6e-18 Score=140.43 Aligned_cols=96 Identities=16% Similarity=0.148 Sum_probs=79.2
Q ss_pred CCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEecch
Q 023470 98 GSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
+.+|||+|||+|....... ++.+|+|+|+|+.+++.++. ...+...|+ .++++++++||+|+++.+
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~v~~~~~ 120 (219)
T 3dlc_A 44 AGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDV---HNIPIEDNYADLIVSRGS 120 (219)
T ss_dssp EEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBT---TBCSSCTTCEEEEEEESC
T ss_pred CCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCH---HHCCCCcccccEEEECch
Confidence 3499999999886443222 57799999999999865542 245677777 678888899999999999
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++|++++..++++++++|||||.+++..+.
T Consensus 121 l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 121 VFFWEDVATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HhhccCHHHHHHHHHHhCCCCCEEEEEecc
Confidence 999999999999999999999999998543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-17 Score=137.93 Aligned_cols=100 Identities=21% Similarity=0.222 Sum_probs=81.8
Q ss_pred hCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.+.++.+|||+|||+|....... .+.+|+|+|+|+.|++.++. ...+...|+ +.+++++++||+|++.
T Consensus 18 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~v~~~ 94 (239)
T 1xxl_A 18 ECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA---ESLPFPDDSFDIITCR 94 (239)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT---TBCCSCTTCEEEEEEE
T ss_pred CcCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccc---ccCCCCCCcEEEEEEC
Confidence 35578899999999886543322 34699999999999876542 345667776 6788888999999999
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.+++|++++..++++++++|||||.+++....
T Consensus 95 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 126 (239)
T 1xxl_A 95 YAAHHFSDVRKAVREVARVLKQDGRFLLVDHY 126 (239)
T ss_dssp SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 99999999999999999999999999987543
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=136.24 Aligned_cols=113 Identities=17% Similarity=0.146 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHh---hCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC-------CCceEEeecccccC
Q 023470 82 GFISTLTNLYRQ---MLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQDQK 150 (282)
Q Consensus 82 ~~~~~~~~~~~~---~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~~~~ 150 (282)
..+..+.+.+.. .+.++.+|||+|||+|....... .+.+|+|+|+|+.|++.++. ...+...|. ..
T Consensus 21 ~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~ 97 (263)
T 2yqz_A 21 EVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADA---RA 97 (263)
T ss_dssp HHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT---TS
T ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEccc---cc
Confidence 455556555533 45678899999999887543322 46799999999999876532 335667776 67
Q ss_pred CCCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 151 LEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 151 l~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+++++++||+|++..+++|++++..++++++++|||||.+++.++..
T Consensus 98 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (263)
T 2yqz_A 98 IPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQA 144 (263)
T ss_dssp CCSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEEecCC
Confidence 88888999999999999999999999999999999999999885443
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.5e-17 Score=136.12 Aligned_cols=149 Identities=15% Similarity=0.186 Sum_probs=98.0
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCCCCceeEEEecch
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
.++.+|||+|||+|... +...++.+|+|+|+|+.|++.++. ...+..+|+ ..++++ ++||+|++..+
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~~~~-~~fD~v~~~~~ 118 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADY---SKYDFE-EKYDMVVSALS 118 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCT---TTCCCC-SCEEEEEEESC
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCch---hccCCC-CCceEEEEeCc
Confidence 36789999999988644 333468899999999999876542 335667776 667766 89999999999
Q ss_pred hhccCCHH--HHHHHHHHcccCCcEEEEEEcCchhHH----HHHHhhh---cCCCCcchhhHH--HHHHhhCCCCchHHh
Q 023470 167 VQYLQQPE--KVFAEVFRVLKPGGVFIVSFSNRMFYE----KAISAWR---DGTAYGRVQLVV--QYFQCVEGYTNPEIV 235 (282)
Q Consensus 167 l~~~~~~~--~~l~~~~r~LkpgG~li~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~--~~~~~~~gF~~~ei~ 235 (282)
++|+++++ .++++++|+|||||.+++..+...... .....|. ...++....... ........++..++.
T Consensus 119 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (234)
T 3dtn_A 119 IHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQL 198 (234)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHH
Confidence 99998766 499999999999999998865432111 1112221 111222111000 011122446667777
Q ss_pred hcCCCCccccccc
Q 023470 236 RKLPADSAAAQED 248 (282)
Q Consensus 236 ~~~~~~g~~~~~~ 248 (282)
..+..+||...+.
T Consensus 199 ~ll~~aGF~~v~~ 211 (234)
T 3dtn_A 199 NWLKEAGFRDVSC 211 (234)
T ss_dssp HHHHHTTCEEEEE
T ss_pred HHHHHcCCCceee
Confidence 7888888866554
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-17 Score=135.99 Aligned_cols=103 Identities=19% Similarity=0.235 Sum_probs=83.8
Q ss_pred HHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC--CCceEEeecccccCCCCCCCceeEEEecchh
Q 023470 91 YRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR--LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 91 ~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~--~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
+...++++.+|||+|||+|....... .+.+|+|+|+|+.+++.++. ...+...++ ..++ .+++||+|+++.++
T Consensus 37 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~---~~~~-~~~~fD~v~~~~~l 112 (211)
T 3e23_A 37 FLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRTMLF---HQLD-AIDAYDAVWAHACL 112 (211)
T ss_dssp HHTTSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEECCG---GGCC-CCSCEEEEEECSCG
T ss_pred HHHhcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhcCCceEEeee---ccCC-CCCcEEEEEecCch
Confidence 34456678899999999887544332 46799999999999977654 345677777 5666 67899999999999
Q ss_pred hccC--CHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 168 QYLQ--QPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 168 ~~~~--~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+|++ ++..++++++++|||||.++++++..
T Consensus 113 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 144 (211)
T 3e23_A 113 LHVPRDELADVLKLIWRALKPGGLFYASYKSG 144 (211)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred hhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 9998 77889999999999999999987653
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-17 Score=136.57 Aligned_cols=105 Identities=20% Similarity=0.227 Sum_probs=84.9
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC-CceEEeecccccCCCCCCCceeEEEecchhhccCCH
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL-EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~-~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~ 173 (282)
.++.+|||+|||+|....... .+.+++|+|+|+.+++.++.. ..+...|+.. ..+++++++||+|++..+++|++++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~fD~v~~~~~l~~~~~~ 109 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIET-MDMPYEEEQFDCVIFGDVLEHLFDP 109 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTSSEEEESCTTT-CCCCSCTTCEEEEEEESCGGGSSCH
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCcEEEcchhh-cCCCCCCCccCEEEECChhhhcCCH
Confidence 467899999999886543322 258999999999999877654 3566777632 2367778899999999999999999
Q ss_pred HHHHHHHHHcccCCcEEEEEEcCchhHH
Q 023470 174 EKVFAEVFRVLKPGGVFIVSFSNRMFYE 201 (282)
Q Consensus 174 ~~~l~~~~r~LkpgG~li~~~~~~~~~~ 201 (282)
..+++++.++|||||.+++++++.....
T Consensus 110 ~~~l~~~~~~L~~gG~l~~~~~~~~~~~ 137 (230)
T 3cc8_A 110 WAVIEKVKPYIKQNGVILASIPNVSHIS 137 (230)
T ss_dssp HHHHHHTGGGEEEEEEEEEEEECTTSHH
T ss_pred HHHHHHHHHHcCCCCEEEEEeCCcchHH
Confidence 9999999999999999999998865543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.1e-17 Score=138.65 Aligned_cols=98 Identities=26% Similarity=0.335 Sum_probs=81.0
Q ss_pred CCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++.+|||||||+|....... .+.+|+|+|+|+.+++.++. ...+...|+ ..+++++++||+|++.
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~ 136 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADA---MDLPFEDASFDAVWAL 136 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCCSCTTCEEEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcc---ccCCCCCCCccEEEEe
Confidence 477899999999886543322 36899999999999865532 245667777 6788888999999999
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.+++|++++..+++++.++|||||++++..+.
T Consensus 137 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 137 ESLHHMPDRGRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp SCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred chhhhCCCHHHHHHHHHHHcCCCeEEEEEEee
Confidence 99999999999999999999999999987643
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.69 E-value=7.3e-17 Score=137.55 Aligned_cols=98 Identities=20% Similarity=0.190 Sum_probs=79.6
Q ss_pred CCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
+.++.+|||||||+|....... .+.+|+|+|+|+.|++.++. +..+..+|+ .++++ +++||+|+|
T Consensus 34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~---~~~~~-~~~fD~V~~ 109 (256)
T 1nkv_A 34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA---AGYVA-NEKCDVAAC 109 (256)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC---TTCCC-SSCEEEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh---HhCCc-CCCCCEEEE
Confidence 4578899999999886443222 36799999999999866532 345667776 66766 789999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
..+++|++++..++++++|+|||||.+++..+.
T Consensus 110 ~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 142 (256)
T 1nkv_A 110 VGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY 142 (256)
T ss_dssp ESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred CCChHhcCCHHHHHHHHHHHcCCCeEEEEecCc
Confidence 999999999999999999999999999997653
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.5e-17 Score=138.39 Aligned_cols=98 Identities=16% Similarity=0.115 Sum_probs=79.9
Q ss_pred CCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
++++.+|||+|||+|....... ...+|+|+|+|+.+++.++.. ..+...|+ ..+++++++||+|++
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~ 120 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSM---DNLPFQNEELDLIWS 120 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCSSCTTCEEEEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh---hhCCCCCCCEEEEEe
Confidence 4567899999999886543322 234999999999998754421 45677777 778888899999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
..+++|+ ++..+++++.++|||||++++..+.
T Consensus 121 ~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 121 EGAIYNI-GFERGMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp ESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred cChHhhc-CHHHHHHHHHHHcCCCcEEEEEEee
Confidence 9999999 8999999999999999999998653
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-16 Score=130.91 Aligned_cols=99 Identities=20% Similarity=0.184 Sum_probs=81.4
Q ss_pred CCCCCeEEEeCCcccchhhh---hc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHLPQ---EV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~---~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
+.++.+|||+|||+|..... .. +..+|+|+|+|+.+++.++. ...+...|+ ..+++++++||+|+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~ 111 (219)
T 3dh0_A 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEE---NKIPLPDNTVDFIF 111 (219)
T ss_dssp CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBT---TBCSSCSSCEEEEE
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccc---ccCCCCCCCeeEEE
Confidence 45788999999998764433 22 45799999999999866542 245667776 67788889999999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++.+++|++++..+++++.++|||||.+++....
T Consensus 112 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 145 (219)
T 3dh0_A 112 MAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWK 145 (219)
T ss_dssp EESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEec
Confidence 9999999999999999999999999999988644
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.6e-17 Score=136.10 Aligned_cols=104 Identities=24% Similarity=0.336 Sum_probs=83.3
Q ss_pred HHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC-------------CCceEEeecccccCCCCCCC
Q 023470 91 YRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR-------------LEYFIVKDLNQDQKLEFDHC 156 (282)
Q Consensus 91 ~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~-------------~~~~~~~d~~~~~~l~~~~~ 156 (282)
+...++++.+|||+|||+|....... .+.+|+|+|+|+.+++.++. ...+...++ ..++++++
T Consensus 24 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~ 100 (235)
T 3sm3_A 24 IHNYLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA---SSLSFHDS 100 (235)
T ss_dssp HHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT---TSCCSCTT
T ss_pred HHHhCCCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecc---cccCCCCC
Confidence 34456788999999999886543322 46799999999999865432 124556666 67788889
Q ss_pred ceeEEEecchhhccCCHH---HHHHHHHHcccCCcEEEEEEcCc
Q 023470 157 SFDAVVCAVSVQYLQQPE---KVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 157 s~D~v~~~~~l~~~~~~~---~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+||+|++..+++|++++. .+++++.++|||||.+++..++.
T Consensus 101 ~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 101 SFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp CEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred ceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 999999999999999988 89999999999999999986654
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=135.19 Aligned_cols=98 Identities=14% Similarity=0.102 Sum_probs=82.7
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC--CceEEeecccccCCCCCCCceeEEEecchhhccCC
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL--EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQ 172 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~--~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~ 172 (282)
.++.+|||||||+|....... ++.+|+|+|+|+.|++.++.. ..+.+.|+ +.+++++++||+|++.++++|+++
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l~~~~~ 109 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQVEWFTGYA---ENLALPDKSVDGVISILAIHHFSH 109 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCTTEEEECCCT---TSCCSCTTCBSEEEEESCGGGCSS
T ss_pred CCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhccCCEEEECch---hhCCCCCCCEeEEEEcchHhhccC
Confidence 578899999999887554332 678999999999999987765 35666676 678888899999999999999999
Q ss_pred HHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 173 PEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 173 ~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+..++++++++|| ||.+++...++
T Consensus 110 ~~~~l~~~~~~Lk-gG~~~~~~~~~ 133 (261)
T 3ege_A 110 LEKSFQEMQRIIR-DGTIVLLTFDI 133 (261)
T ss_dssp HHHHHHHHHHHBC-SSCEEEEEECG
T ss_pred HHHHHHHHHHHhC-CcEEEEEEcCC
Confidence 9999999999999 99887765543
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-16 Score=135.88 Aligned_cols=100 Identities=25% Similarity=0.363 Sum_probs=83.6
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC---CCceEEeecccccCCCCCCCceeEEEecchhhcc
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR---LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~---~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~ 170 (282)
..++.+|||||||+|....... ++.+|+|+|+|+.|++.++. ...+.+.|+ ..+++ +++||+|++..+++|+
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~---~~~~~-~~~fD~v~~~~~l~~~ 130 (279)
T 3ccf_A 55 PQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADA---RNFRV-DKPLDAVFSNAMLHWV 130 (279)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSCEEECCT---TTCCC-SSCEEEEEEESCGGGC
T ss_pred CCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCEEEECCh---hhCCc-CCCcCEEEEcchhhhC
Confidence 3467899999999887543322 67899999999999976653 456778887 66776 5799999999999999
Q ss_pred CCHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 171 QQPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 171 ~~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
+++..++++++|+|||||.+++.+++..
T Consensus 131 ~d~~~~l~~~~~~LkpgG~l~~~~~~~~ 158 (279)
T 3ccf_A 131 KEPEAAIASIHQALKSGGRFVAEFGGKG 158 (279)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred cCHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 9999999999999999999999887653
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-17 Score=141.84 Aligned_cols=99 Identities=20% Similarity=0.241 Sum_probs=81.1
Q ss_pred CCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCCCCceeEEEecch
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
+.++.+|||+|||+|....... .+.+|+|+|+|+.|++.++. ...+...|+ ..+++++++||+|++..+
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~ 129 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDI---LTKEFPENNFDLIYSRDA 129 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCT---TTCCCCTTCEEEEEEESC
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECcc---ccCCCCCCcEEEEeHHHH
Confidence 3467899999999886543322 16799999999999976543 335667777 677888899999999999
Q ss_pred hhcc--CCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 167 VQYL--QQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 167 l~~~--~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++|+ .++..++++++++|||||.+++..+.
T Consensus 130 l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (266)
T 3ujc_A 130 ILALSLENKNKLFQKCYKWLKPTGTLLITDYC 161 (266)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHhcChHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 9999 78899999999999999999998653
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=135.95 Aligned_cols=111 Identities=22% Similarity=0.224 Sum_probs=88.8
Q ss_pred HHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC--CceEEeecccccCCCCCCCceeEE
Q 023470 85 STLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL--EYFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 85 ~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~--~~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
..+...+...++++.+|||||||+|....... .+.+|+|+|+|+.|++.++.. ..+...|+ ..+++++++||+|
T Consensus 42 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~---~~~~~~~~~fD~v 118 (260)
T 2avn_A 42 RLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKA---EDLPFPSGAFEAV 118 (260)
T ss_dssp HHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCT---TSCCSCTTCEEEE
T ss_pred HHHHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCCCEEECcH---HHCCCCCCCEEEE
Confidence 44556666667788899999999987554332 467999999999999765432 23677777 6788888999999
Q ss_pred Eecchhhcc-CCHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 162 VCAVSVQYL-QQPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 162 ~~~~~l~~~-~~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
++..+++|. +++..+++++.++|||||.+++++++..
T Consensus 119 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 156 (260)
T 2avn_A 119 LALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY 156 (260)
T ss_dssp EECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred EEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChH
Confidence 999877666 7899999999999999999999988764
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-16 Score=137.39 Aligned_cols=97 Identities=22% Similarity=0.198 Sum_probs=80.2
Q ss_pred CCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++.+|||+|||+|....... .+.+|+|+|+|+.+++.++. +..+..+|+ .++++++++||+|++.
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~V~~~ 192 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM---LDTPFDKGAVTASWNN 192 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCCCCTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh---hcCCCCCCCEeEEEEC
Confidence 467899999999886543322 26799999999999976542 346777777 6788888999999999
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.+++|+ ++..+++++.++|||||++++..+.
T Consensus 193 ~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~ 223 (312)
T 3vc1_A 193 ESTMYV-DLHDLFSEHSRFLKVGGRYVTITGC 223 (312)
T ss_dssp SCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhC-CHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 999999 6999999999999999999987653
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=7.5e-17 Score=147.46 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=80.8
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCC-ceEEeecccc--cCCCCCCCceeEEEecchhhccC
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLE-YFIVKDLNQD--QKLEFDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~~~--~~l~~~~~s~D~v~~~~~l~~~~ 171 (282)
.++.+|||||||+|..+.... .+.+|+|+|+|+.|++.++... ......+..+ ..+++++++||+|+++++++|++
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~ 185 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLCHIP 185 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGGGCT
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECChHHhcC
Confidence 467899999999887654432 5679999999999998776542 1111111100 44566678999999999999999
Q ss_pred CHHHHHHHHHHcccCCcEEEEEEcCchh
Q 023470 172 QPEKVFAEVFRVLKPGGVFIVSFSNRMF 199 (282)
Q Consensus 172 ~~~~~l~~~~r~LkpgG~li~~~~~~~~ 199 (282)
++..++++++|+|||||++++++++...
T Consensus 186 d~~~~l~~~~r~LkpgG~l~i~~~~~~~ 213 (416)
T 4e2x_A 186 YVQSVLEGVDALLAPDGVFVFEDPYLGD 213 (416)
T ss_dssp THHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred CHHHHHHHHHHHcCCCeEEEEEeCChHH
Confidence 9999999999999999999999887543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9e-17 Score=133.86 Aligned_cols=97 Identities=15% Similarity=0.153 Sum_probs=75.6
Q ss_pred CCCeEEEeCCcccchhhhh---cCCCeEEEEcCCHHHHHhCCC-------------CCceEEeecccccCCCCCCCceeE
Q 023470 97 PGSEVLDLMSSWVSHLPQE---VSYKRVVGHGLNAQELAKNPR-------------LEYFIVKDLNQDQKLEFDHCSFDA 160 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~---~~~~~v~giD~s~~~l~~~~~-------------~~~~~~~d~~~~~~l~~~~~s~D~ 160 (282)
++.+|||+|||+|...... .+..+|+|+|+|+.|++.++. ...+..+|+ ...+.++++||+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~ 105 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL---TYQDKRFHGYDA 105 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT---TSCCGGGCSCSE
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc---ccccccCCCcCE
Confidence 6789999999988754433 244799999999999876542 245666666 556666689999
Q ss_pred EEecchhhccCCH--HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 161 VVCAVSVQYLQQP--EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 161 v~~~~~l~~~~~~--~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
|++..+++|++++ ..+++++.++|||||.++++ ++.
T Consensus 106 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~-~~~ 143 (217)
T 3jwh_A 106 ATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT-PNI 143 (217)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE-EBH
T ss_pred EeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEc-cCc
Confidence 9999999999866 78999999999999965554 443
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-16 Score=136.68 Aligned_cols=99 Identities=23% Similarity=0.398 Sum_probs=82.2
Q ss_pred CCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
++++.+|||||||+|... +...++.+|+|+|+|+.+++.++. ...+...|+ ..+++++++||+|++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~ 111 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANI---FSLPFEDSSFDHIFV 111 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCG---GGCCSCTTCEEEEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEccc---ccCCCCCCCeeEEEE
Confidence 357889999999988644 333457899999999999875532 345667777 677888899999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
..+++|++++..+++++.++|||||.+++..++
T Consensus 112 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (276)
T 3mgg_A 112 CFVLEHLQSPEEALKSLKKVLKPGGTITVIEGD 144 (276)
T ss_dssp ESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred echhhhcCCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 999999999999999999999999999998654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-16 Score=127.86 Aligned_cols=145 Identities=12% Similarity=0.043 Sum_probs=103.1
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC---CceEEeecccccCCCCCCCceeEEEecchhhcc
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL---EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~---~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~ 170 (282)
+.++.+|||+|||.|....... .+.+|+|+|+|+.+++.++.. ..+...| +++++++||+|+++.+++|+
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~v~~~~~d------~~~~~~~~D~v~~~~~l~~~ 88 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITLSDP------KEIPDNSVDFILFANSFHDM 88 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCTTSEEESSG------GGSCTTCEEEEEEESCSTTC
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCCCcEEEeCC------CCCCCCceEEEEEccchhcc
Confidence 4577899999999886544332 224999999999998766432 2333332 66778899999999999999
Q ss_pred CCHHHHHHHHHHcccCCcEEEEEEcCchhHHHHHHhhhcCCCCcchhhHHHHHHhhCCCCchHHhhcCCCCccccccccC
Q 023470 171 QQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPADSAAAQEDKS 250 (282)
Q Consensus 171 ~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~ei~~~~~~~g~~~~~~~~ 250 (282)
+++..+++++.++|||||.+++........ ..... ....|+..++.+.+. ||.......
T Consensus 89 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~---------~~~~~----------~~~~~~~~~~~~~l~--Gf~~~~~~~ 147 (170)
T 3i9f_A 89 DDKQHVISEVKRILKDDGRVIIIDWRKENT---------GIGPP----------LSIRMDEKDYMGWFS--NFVVEKRFN 147 (170)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECSSCC---------SSSSC----------GGGCCCHHHHHHHTT--TEEEEEEEC
T ss_pred cCHHHHHHHHHHhcCCCCEEEEEEcCcccc---------ccCch----------HhhhcCHHHHHHHHh--CcEEEEccC
Confidence 999999999999999999999986543210 00000 013477778887777 886655422
Q ss_pred chHHHHHHhccCCCCCCeEEEEEeecCcc
Q 023470 251 PISWLMRLLGFLSGSDPFYAVIAYKNFKP 279 (282)
Q Consensus 251 ~~~~l~~~~~~~~~~~~~~~v~~~k~~~~ 279 (282)
.....|.+.+.++-.|
T Consensus 148 -------------~~~~~~~l~~~~~~~~ 163 (170)
T 3i9f_A 148 -------------PTPYHFGLVLKRKTSE 163 (170)
T ss_dssp -------------SSTTEEEEEEEECCCC
T ss_pred -------------CCCceEEEEEecCCCC
Confidence 2356788888877655
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-16 Score=142.64 Aligned_cols=98 Identities=22% Similarity=0.265 Sum_probs=80.8
Q ss_pred CCCCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHhCCC----------------CCceEEeecccccCC----
Q 023470 96 RPGSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAKNPR----------------LEYFIVKDLNQDQKL---- 151 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~~~~----------------~~~~~~~d~~~~~~l---- 151 (282)
.++.+|||||||+|.. ++... +..+|+|+|+|+.|++.++. +..+...|+ ..+
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~---~~l~~~~ 158 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFI---ENLATAE 158 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCT---TCGGGCB
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccH---HHhhhcc
Confidence 4678999999998863 33333 57799999999999976542 345677777 444
Q ss_pred --CCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 152 --EFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 152 --~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++++++||+|+++.+++|++++..++++++|+|||||++++..+.
T Consensus 159 ~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 205 (383)
T 4fsd_A 159 PEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVY 205 (383)
T ss_dssp SCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEec
Confidence 888899999999999999999999999999999999999997543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-17 Score=135.12 Aligned_cols=96 Identities=14% Similarity=0.055 Sum_probs=75.1
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC--------------------CCceEEeecccccCCCC
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR--------------------LEYFIVKDLNQDQKLEF 153 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~--------------------~~~~~~~d~~~~~~l~~ 153 (282)
++++.+|||+|||+|....... .+.+|+|+|+|+.|++.++. ...+.++|+ .++++
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~---~~l~~ 96 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF---FALTA 96 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC---SSSTH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcc---ccCCc
Confidence 4578899999999986543322 36799999999999975532 345777887 67776
Q ss_pred CC-CceeEEEecchhhccCC--HHHHHHHHHHcccCCcEEEEE
Q 023470 154 DH-CSFDAVVCAVSVQYLQQ--PEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 154 ~~-~s~D~v~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~ 193 (282)
++ ++||+|++..+++|++. ...++++++|+|||||++++.
T Consensus 97 ~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~ 139 (203)
T 1pjz_A 97 RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 139 (203)
T ss_dssp HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred ccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 65 78999999999999974 345899999999999985544
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-16 Score=130.17 Aligned_cols=111 Identities=19% Similarity=0.158 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEeCCcccchhh-h-hcCCCeEEEEcCCHHHHHhCCC-------CCceEEeecccccCCC
Q 023470 82 GFISTLTNLYRQMLRPGSEVLDLMSSWVSHLP-Q-EVSYKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQDQKLE 152 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~-~-~~~~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~~~~l~ 152 (282)
..+..+...+. ...++.+|||+|||+|.... . ...+.+|+|+|+|+.|++.++. ...+...|+ .+++
T Consensus 9 ~~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~ 84 (209)
T 2p8j_A 9 PQLYRFLKYCN-ESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDI---RKLP 84 (209)
T ss_dssp THHHHHHHHHH-HSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCT---TSCC
T ss_pred hhHHHHHHHHh-ccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECch---hhCC
Confidence 34444444443 35577899999999876422 1 2266799999999999876542 345677777 6778
Q ss_pred CCCCceeEEEecchhhcc--CCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 153 FDHCSFDAVVCAVSVQYL--QQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 153 ~~~~s~D~v~~~~~l~~~--~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+++++||+|++..+++|+ .++..++++++++|||||.+++.+.+
T Consensus 85 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 85 FKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp SCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 888999999999999999 57788999999999999999998754
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-16 Score=140.06 Aligned_cols=104 Identities=13% Similarity=0.178 Sum_probs=78.2
Q ss_pred CCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCC--------------CceEEeecccc---cCC--CCCC
Q 023470 97 PGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRL--------------EYFIVKDLNQD---QKL--EFDH 155 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~--------------~~~~~~d~~~~---~~l--~~~~ 155 (282)
++.+|||||||+|..+... .+..+|+|+|+|+.|++.|+.. ..+.+.++..+ .++ ++++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 4789999999998644322 2457999999999999876532 12445555322 111 3567
Q ss_pred CceeEEEecchhhcc---CCHHHHHHHHHHcccCCcEEEEEEcCchhH
Q 023470 156 CSFDAVVCAVSVQYL---QQPEKVFAEVFRVLKPGGVFIVSFSNRMFY 200 (282)
Q Consensus 156 ~s~D~v~~~~~l~~~---~~~~~~l~~~~r~LkpgG~li~~~~~~~~~ 200 (282)
++||+|+|.+++||+ .+...++++++|+|||||+++++++++...
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~ 175 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKL 175 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence 899999999999986 466789999999999999999999886443
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-16 Score=136.00 Aligned_cols=114 Identities=19% Similarity=0.195 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC------------CceEEeeccccc
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL------------EYFIVKDLNQDQ 149 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~------------~~~~~~d~~~~~ 149 (282)
+...+...+.. .++.+|||||||+|....... .+.+|+|+|+|+.|++.++.+ ..+...+. .
T Consensus 45 ~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~---~ 119 (293)
T 3thr_A 45 YKAWLLGLLRQ--HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW---L 119 (293)
T ss_dssp HHHHHHHHHHH--TTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCG---G
T ss_pred HHHHHHHHhcc--cCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecCh---h
Confidence 33344444433 267899999999987544332 466999999999999766421 13445555 5
Q ss_pred CCC---CCCCceeEEEec-chhhccCC-------HHHHHHHHHHcccCCcEEEEEEcCchhHH
Q 023470 150 KLE---FDHCSFDAVVCA-VSVQYLQQ-------PEKVFAEVFRVLKPGGVFIVSFSNRMFYE 201 (282)
Q Consensus 150 ~l~---~~~~s~D~v~~~-~~l~~~~~-------~~~~l~~~~r~LkpgG~li~~~~~~~~~~ 201 (282)
.++ +++++||+|+|. .+++|+++ +..++++++++|||||++++++++.....
T Consensus 120 ~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 182 (293)
T 3thr_A 120 TLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYIL 182 (293)
T ss_dssp GHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHH
T ss_pred hCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHHHHh
Confidence 555 678999999999 89999999 89999999999999999999998865544
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-16 Score=136.13 Aligned_cols=93 Identities=14% Similarity=0.238 Sum_probs=77.8
Q ss_pred CCCCeEEEeCCcccchh---hhh-cCCCeEEEEcCCHHHHHhCC----------CCCceEEeecccccCCCCCC------
Q 023470 96 RPGSEVLDLMSSWVSHL---PQE-VSYKRVVGHGLNAQELAKNP----------RLEYFIVKDLNQDQKLEFDH------ 155 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~-~~~~~v~giD~s~~~l~~~~----------~~~~~~~~d~~~~~~l~~~~------ 155 (282)
.++.+|||||||+|... +.. .++.+|+|+|+|+.|++.++ ....+.+.|+ +++++++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~~ 111 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSS---DDFKFLGADSVDK 111 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCT---TCCGGGCTTTTTS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCH---HhCCccccccccC
Confidence 47889999999988643 322 27899999999999987653 2446777887 6677666
Q ss_pred CceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEE
Q 023470 156 CSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 156 ~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
++||+|++..++||+ ++..+++++.++|||||.+++
T Consensus 112 ~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 112 QKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp SCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEE
T ss_pred CCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEE
Confidence 899999999999999 999999999999999999987
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.64 E-value=9.9e-16 Score=132.98 Aligned_cols=98 Identities=15% Similarity=0.225 Sum_probs=80.5
Q ss_pred CCCCCeEEEeCCcccchhhh---hcC-CCeEEEEcCCHHHHHhCCC-------CCceEEeecccccCCCCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHLPQ---EVS-YKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~---~~~-~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
+.++.+|||||||+|..... ..+ +.+|+|+|+|+.+++.++. +..+.+.|+ .++++ +++||+|++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~---~~~~~-~~~fD~v~~ 95 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDA---TEIEL-NDKYDIAIC 95 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCT---TTCCC-SSCEEEEEE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcch---hhcCc-CCCeeEEEE
Confidence 35678999999998865433 334 5899999999999865432 345677777 66776 469999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
..+++|++++..++++++++|||||.+++..++
T Consensus 96 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 96 HAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp ESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 999999999999999999999999999998876
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.64 E-value=5e-16 Score=131.13 Aligned_cols=114 Identities=20% Similarity=0.288 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC-------CCceEEeecccccCCCCC
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQDQKLEFD 154 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~~~~l~~~ 154 (282)
+...+...+.....++.+|||+|||+|....... .+.+++|+|+|+.|++.++. ...+...|+ ..++++
T Consensus 23 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~ 99 (246)
T 1y8c_A 23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDI---SNLNIN 99 (246)
T ss_dssp HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCG---GGCCCS
T ss_pred HHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEeccc---ccCCcc
Confidence 4455555665554577899999999887544332 36799999999999876542 345666776 566665
Q ss_pred CCceeEEEecc-hhhcc---CCHHHHHHHHHHcccCCcEEEEEEcCchhH
Q 023470 155 HCSFDAVVCAV-SVQYL---QQPEKVFAEVFRVLKPGGVFIVSFSNRMFY 200 (282)
Q Consensus 155 ~~s~D~v~~~~-~l~~~---~~~~~~l~~~~r~LkpgG~li~~~~~~~~~ 200 (282)
++||+|++.. +++|+ .++..++++++++|||||.++++++++...
T Consensus 100 -~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 148 (246)
T 1y8c_A 100 -RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKL 148 (246)
T ss_dssp -CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHH
T ss_pred -CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHH
Confidence 8899999998 99999 567789999999999999999998876443
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.9e-16 Score=131.52 Aligned_cols=108 Identities=24% Similarity=0.295 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC---CCceEEeecccccCCCCCCCce
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR---LEYFIVKDLNQDQKLEFDHCSF 158 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~---~~~~~~~d~~~~~~l~~~~~s~ 158 (282)
....+...+...++++.+|||||||+|....... .+.+|+|+|+|+.|++.++. ...+..+|+ ..+++ +++|
T Consensus 36 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~---~~~~~-~~~f 111 (263)
T 3pfg_A 36 EAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDM---RDFSL-GRRF 111 (263)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTSEEEECCT---TTCCC-SCCE
T ss_pred HHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCEEEECCh---HHCCc-cCCc
Confidence 4455666677777788999999999987655443 46799999999999976643 456777887 66776 6899
Q ss_pred eEEEecc-hhhccC---CHHHHHHHHHHcccCCcEEEEEE
Q 023470 159 DAVVCAV-SVQYLQ---QPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 159 D~v~~~~-~l~~~~---~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
|+|+|.. +++|++ +...++++++++|||||.++++.
T Consensus 112 D~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 112 SAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp EEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999998 999996 55578999999999999999973
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.3e-16 Score=128.25 Aligned_cols=99 Identities=22% Similarity=0.144 Sum_probs=80.3
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC----CCceEEeecccccCCCCCCCceeEEEecchhhc
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR----LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~----~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~ 169 (282)
++++.+|||+|||+|....... .+.+|+|+|+|+.|++.++. ...+..+|+ .++ +++++||+|+++.+++|
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~---~~~-~~~~~~D~v~~~~~l~~ 119 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGLDNVEFRQQDL---FDW-TPDRQWDAVFFAHWLAH 119 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGGCCTTEEEEECCT---TSC-CCSSCEEEEEEESCGGG
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhcCCCCeEEEeccc---ccC-CCCCceeEEEEechhhc
Confidence 4567899999999886543322 36799999999999977653 335667776 555 67889999999999999
Q ss_pred cCCH--HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 170 LQQP--EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 170 ~~~~--~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
++++ ..++++++++|||||.+++..+++
T Consensus 120 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 120 VPDDRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 9886 789999999999999999987765
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-16 Score=136.22 Aligned_cols=105 Identities=14% Similarity=0.164 Sum_probs=75.2
Q ss_pred HHHHHHhhCCCCCeEEEeCCcccchhh--hhcCCCeEEEEcCCHHHHHhCCCC---------------------------
Q 023470 87 LTNLYRQMLRPGSEVLDLMSSWVSHLP--QEVSYKRVVGHGLNAQELAKNPRL--------------------------- 137 (282)
Q Consensus 87 ~~~~~~~~~~~~~~vLDiGcG~~~~~~--~~~~~~~v~giD~s~~~l~~~~~~--------------------------- 137 (282)
+...+.....++.+|||||||+|.... ....+.+|+|+|+|+.|++.+++.
T Consensus 61 l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 140 (289)
T 2g72_A 61 LAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECW 140 (289)
T ss_dssp HHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCH
T ss_pred HHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccch
Confidence 334443322367899999999887322 222467999999999999754321
Q ss_pred -----------CceEEeecccccC-CC-----CCCCceeEEEecchhhc----cCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 138 -----------EYFIVKDLNQDQK-LE-----FDHCSFDAVVCAVSVQY----LQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 138 -----------~~~~~~d~~~~~~-l~-----~~~~s~D~v~~~~~l~~----~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
..+..+|+ .. ++ +++++||+|+|+++++| ++++..++++++|+|||||+|++..
T Consensus 141 ~~~~~~~~~~~~~~~~~D~---~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 141 QDKERQLRARVKRVLPIDV---HQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp HHHHHHHHHHEEEEECCCT---TSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhHHHHHhhhceEEeccc---CCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 01223355 33 44 34577999999999999 6678899999999999999999873
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.9e-16 Score=131.22 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=82.1
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCC---CCCceEEeecccccCCCCCCCceeEEEecchhhc
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNP---RLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~---~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~ 169 (282)
.++.+|||+|||+|... +...++.+|+|+|+|+.|++.++ ....+...|+ ..++ ++++||+|+++.+++|
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~---~~~~-~~~~fD~v~~~~~l~~ 107 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADL---ATWK-PAQKADLLYANAVFQW 107 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCT---TTCC-CSSCEEEEEEESCGGG
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECCh---hhcC-ccCCcCEEEEeCchhh
Confidence 46789999999988643 33335789999999999997664 3456777777 6666 6789999999999999
Q ss_pred cCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 170 LQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 170 ~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
++++..++++++++|||||.+++.+++.
T Consensus 108 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 108 VPDHLAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp STTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 9999999999999999999999998754
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.63 E-value=7.2e-16 Score=128.43 Aligned_cols=97 Identities=18% Similarity=0.222 Sum_probs=76.3
Q ss_pred CCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCC-------------CCceEEeecccccCCCCCCCceeE
Q 023470 97 PGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPR-------------LEYFIVKDLNQDQKLEFDHCSFDA 160 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~-------------~~~~~~~d~~~~~~l~~~~~s~D~ 160 (282)
++.+|||||||+|....... +..+|+|+|+|+.+++.++. ...+..+|+ ..++.++++||+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~ 105 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL---VYRDKRFSGYDA 105 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS---SSCCGGGTTCSE
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc---cccccccCCCCE
Confidence 67899999999887554332 44799999999999976543 345666676 566666789999
Q ss_pred EEecchhhccCCH--HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 161 VVCAVSVQYLQQP--EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 161 v~~~~~l~~~~~~--~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
|++..+++|++++ ..+++++.++|||||.+ +.+++.
T Consensus 106 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~-i~~~~~ 143 (219)
T 3jwg_A 106 ATVIEVIEHLDENRLQAFEKVLFEFTRPQTVI-VSTPNK 143 (219)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHHTTTCCSEEE-EEEEBG
T ss_pred EEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEE-EEccch
Confidence 9999999999866 68999999999999954 444553
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=124.14 Aligned_cols=105 Identities=21% Similarity=0.259 Sum_probs=82.2
Q ss_pred HHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC---CCceEEeecccccCCCCCCCceeEEEec-
Q 023470 90 LYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR---LEYFIVKDLNQDQKLEFDHCSFDAVVCA- 164 (282)
Q Consensus 90 ~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~---~~~~~~~d~~~~~~l~~~~~s~D~v~~~- 164 (282)
++...++++.+|||+|||.|....... .+.+++|+|+|+.+++.++. ...+...|+ ..+++++++||+|++.
T Consensus 39 ~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~---~~~~~~~~~~D~i~~~~ 115 (195)
T 3cgg_A 39 LIDAMAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVGDL---SVDQISETDFDLIVSAG 115 (195)
T ss_dssp HHHHHSCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSEEEECCT---TTSCCCCCCEEEEEECC
T ss_pred HHHHhccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCCCcEEEccc---ccCCCCCCceeEEEECC
Confidence 444557788999999999886543322 36799999999999876543 345667777 5667778899999999
Q ss_pred chhhccC--CHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 165 VSVQYLQ--QPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 165 ~~l~~~~--~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.+++|+. +...+++++.++|||||.+++.+++.
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~ 150 (195)
T 3cgg_A 116 NVMGFLAEDGREPALANIHRALGADGRAVIGFGAG 150 (195)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred cHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 7888884 44779999999999999999987653
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.3e-16 Score=134.91 Aligned_cols=101 Identities=20% Similarity=0.387 Sum_probs=75.5
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC------------------------------------
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL------------------------------------ 137 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~------------------------------------ 137 (282)
++.+|||||||+|... +...+..+|+|+|+|+.|++.++..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 5789999999988643 3334678999999999999765422
Q ss_pred ------------------------------CceEEeeccccc--CCCCCCCceeEEEecchhhccC------CHHHHHHH
Q 023470 138 ------------------------------EYFIVKDLNQDQ--KLEFDHCSFDAVVCAVSVQYLQ------QPEKVFAE 179 (282)
Q Consensus 138 ------------------------------~~~~~~d~~~~~--~l~~~~~s~D~v~~~~~l~~~~------~~~~~l~~ 179 (282)
..+..+|+.... .+++.+++||+|+|..+++|+. +...++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 234445542110 1234678999999999998885 77789999
Q ss_pred HHHcccCCcEEEEEEcCc
Q 023470 180 VFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 180 ~~r~LkpgG~li~~~~~~ 197 (282)
++++|||||+|+++....
T Consensus 206 ~~~~LkpGG~lil~~~~~ 223 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPW 223 (292)
T ss_dssp HHHHEEEEEEEEEECCCH
T ss_pred HHHHhCCCcEEEEecCCc
Confidence 999999999999985543
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.4e-16 Score=128.41 Aligned_cols=98 Identities=15% Similarity=0.227 Sum_probs=78.4
Q ss_pred CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCCCCceeEEEecchhhc
Q 023470 97 PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~ 169 (282)
++.+|||+|||+|....... .+.+|+|+|+|+.|++.++. ...+...|+ .+++ ++++||+|+++.+++|
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~~-~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDI---LQFS-TAELFDLIVVAEVLYY 126 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCT---TTCC-CSCCEEEEEEESCGGG
T ss_pred CCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcch---hhCC-CCCCccEEEEccHHHh
Confidence 56789999999887544332 35699999999999875542 235667777 5565 5789999999999999
Q ss_pred cCCHH---HHHHHHHHcccCCcEEEEEEcCch
Q 023470 170 LQQPE---KVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 170 ~~~~~---~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
+++++ .+++++.++|||||.++++++...
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 158 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSARDA 158 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Confidence 99884 579999999999999999887653
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.9e-16 Score=129.67 Aligned_cols=105 Identities=18% Similarity=0.149 Sum_probs=80.1
Q ss_pred HHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCC
Q 023470 87 LTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHC 156 (282)
Q Consensus 87 ~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~ 156 (282)
+...+.....++.+|||+|||+|....... .+.+|+|+|+|+.+++.++.. ..+..+|+ ..++ +++
T Consensus 56 l~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~-~~~ 131 (235)
T 3lcc_A 56 IVHLVDTSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDV---FTWR-PTE 131 (235)
T ss_dssp HHHHHHTTCSCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCT---TTCC-CSS
T ss_pred HHHHHHhcCCCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECch---hcCC-CCC
Confidence 333444333355699999999987554433 678999999999998755421 34666666 5555 456
Q ss_pred ceeEEEecchhhccC--CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 157 SFDAVVCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 157 s~D~v~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+||+|++..+++|++ +...+++++.++|||||.+++...
T Consensus 132 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 172 (235)
T 3lcc_A 132 LFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMY 172 (235)
T ss_dssp CEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence 899999999999998 888999999999999999998654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-16 Score=131.51 Aligned_cols=97 Identities=13% Similarity=0.144 Sum_probs=78.0
Q ss_pred CCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEecch
Q 023470 97 PGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
++.+|||||||+|....... ...+|+|+|+|+.|++.++.. ..+...|+ ..+++++++||+|++..+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~ 155 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL---QDFTPEPDSYDVIWIQWV 155 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG---GGCCCCSSCEEEEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcCh---hhcCCCCCCEEEEEEcch
Confidence 47899999999987554332 356999999999999765432 24566666 667777789999999999
Q ss_pred hhccCCHH--HHHHHHHHcccCCcEEEEEEcC
Q 023470 167 VQYLQQPE--KVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 167 l~~~~~~~--~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++|++++. .+++++.++|||||.+++..+.
T Consensus 156 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 187 (241)
T 2ex4_A 156 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM 187 (241)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 99998855 8999999999999999997654
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.8e-16 Score=136.27 Aligned_cols=115 Identities=22% Similarity=0.276 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCC---------------CCceEEee
Q 023470 82 GFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPR---------------LEYFIVKD 144 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~---------------~~~~~~~d 144 (282)
..+..+...+...++++.+|||+|||+|...... .+..+|+|+|+|+.|++.++. ...+.+.|
T Consensus 19 ~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D 98 (313)
T 3bgv_A 19 VLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITAD 98 (313)
T ss_dssp HHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECC
T ss_pred HHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEec
Confidence 4555555555555567889999999988754432 257799999999999876542 23566777
Q ss_pred cccccCCC----C--CCCceeEEEecchhhcc-CC---HHHHHHHHHHcccCCcEEEEEEcCchh
Q 023470 145 LNQDQKLE----F--DHCSFDAVVCAVSVQYL-QQ---PEKVFAEVFRVLKPGGVFIVSFSNRMF 199 (282)
Q Consensus 145 ~~~~~~l~----~--~~~s~D~v~~~~~l~~~-~~---~~~~l~~~~r~LkpgG~li~~~~~~~~ 199 (282)
+ ..++ + ++++||+|+|++++||+ .+ +..++++++++|||||.+++++++...
T Consensus 99 ~---~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~ 160 (313)
T 3bgv_A 99 S---SKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFE 160 (313)
T ss_dssp T---TTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHH
T ss_pred c---cccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHH
Confidence 7 4443 4 34689999999999998 44 467999999999999999999988643
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=126.38 Aligned_cols=112 Identities=32% Similarity=0.345 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCC-------CCCceEEeecccccCCCCC
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNP-------RLEYFIVKDLNQDQKLEFD 154 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~-------~~~~~~~~d~~~~~~l~~~ 154 (282)
..+.+.+.+.+.++++.+|||+|||+|....... .+.+++|+|+|+.+++.++ ....+...|+ ..++++
T Consensus 24 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~ 100 (227)
T 1ve3_A 24 RIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDA---RKLSFE 100 (227)
T ss_dssp HHHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT---TSCCSC
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECch---hcCCCC
Confidence 3445566666777788999999999886543322 3459999999999986554 2346777777 667777
Q ss_pred CCceeEEEecch--hhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 155 HCSFDAVVCAVS--VQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 155 ~~s~D~v~~~~~--l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+++||+|+++.+ ++|..++..++++++++|||||.+++..++.
T Consensus 101 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 145 (227)
T 1ve3_A 101 DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL 145 (227)
T ss_dssp TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence 889999999999 6666678889999999999999999987763
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=131.58 Aligned_cols=96 Identities=17% Similarity=0.326 Sum_probs=75.8
Q ss_pred CCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
+.++.+|||||||+|....... .+.+|+|+|+|+.|++.++. ...+..+|+ .++ +++||+|++
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~---~~~fD~v~~ 143 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW---EEF---DEPVDRIVS 143 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCG---GGC---CCCCSEEEE
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCH---HHc---CCCccEEEE
Confidence 4578899999999886543322 14899999999999876542 234666666 444 689999999
Q ss_pred cchhhccCCH---------HHHHHHHHHcccCCcEEEEEEcC
Q 023470 164 AVSVQYLQQP---------EKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 164 ~~~l~~~~~~---------~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+.+++|++++ ..+++++.++|||||++++....
T Consensus 144 ~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 185 (302)
T 3hem_A 144 LGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 185 (302)
T ss_dssp ESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEE
T ss_pred cchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 9999999776 78999999999999999987553
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8e-16 Score=131.46 Aligned_cols=95 Identities=11% Similarity=0.069 Sum_probs=74.6
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCC-------------------------CCCceEEeeccccc
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNP-------------------------RLEYFIVKDLNQDQ 149 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~-------------------------~~~~~~~~d~~~~~ 149 (282)
.++.+|||+|||+|....... .+.+|+|+|+|+.|++.++ ....+.++|+ .
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~---~ 143 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI---F 143 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT---T
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc---c
Confidence 467899999999887543322 5679999999999997542 1235667777 6
Q ss_pred CCCCCC-CceeEEEecchhhccC--CHHHHHHHHHHcccCCcEEEEE
Q 023470 150 KLEFDH-CSFDAVVCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 150 ~l~~~~-~s~D~v~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+++..+ ++||+|++..+++|++ +...+++++.|+|||||++++.
T Consensus 144 ~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~ 190 (252)
T 2gb4_A 144 DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA 190 (252)
T ss_dssp TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 777654 8999999999999996 3456999999999999999644
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=128.54 Aligned_cols=112 Identities=21% Similarity=0.279 Sum_probs=87.0
Q ss_pred HHHHHHHHhhCCCCCeEEEeCCcccchhhhhcCCCeEEEEcCCHHHHHhCCC-------CCceEEeecccccCCCCCCCc
Q 023470 85 STLTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQDQKLEFDHCS 157 (282)
Q Consensus 85 ~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~~~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~~~~l~~~~~s 157 (282)
..+...+...++++.+|||+|||+|..........+|+|+|+|+.|++.++. ...+...|+ ..++++ ++
T Consensus 21 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~-~~ 96 (243)
T 3d2l_A 21 PEWVAWVLEQVEPGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDM---RELELP-EP 96 (243)
T ss_dssp HHHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCG---GGCCCS-SC
T ss_pred HHHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhhhhcCCceEEEEcCh---hhcCCC-CC
Confidence 3455556667778899999999998765444333899999999999876542 345667776 556665 78
Q ss_pred eeEEEecc-hhhccC---CHHHHHHHHHHcccCCcEEEEEEcCchhH
Q 023470 158 FDAVVCAV-SVQYLQ---QPEKVFAEVFRVLKPGGVFIVSFSNRMFY 200 (282)
Q Consensus 158 ~D~v~~~~-~l~~~~---~~~~~l~~~~r~LkpgG~li~~~~~~~~~ 200 (282)
||+|++.. +++|+. +...+++++.++|||||.++++++++...
T Consensus 97 fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 143 (243)
T 3d2l_A 97 VDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKM 143 (243)
T ss_dssp EEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred cCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHH
Confidence 99999987 999994 55679999999999999999998876443
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-15 Score=124.16 Aligned_cols=110 Identities=26% Similarity=0.317 Sum_probs=86.0
Q ss_pred HHHHHHHhhCCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCCCCc
Q 023470 86 TLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFDHCS 157 (282)
Q Consensus 86 ~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~~~s 157 (282)
.+...+...+.++.+|||+|||.|....... ...+|+|+|+|+.+++.++. ...+...|+ ..+++++++
T Consensus 31 ~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~---~~~~~~~~~ 107 (215)
T 2pxx_A 31 SFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDV---RKLDFPSAS 107 (215)
T ss_dssp HHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCT---TSCCSCSSC
T ss_pred HHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcch---hcCCCCCCc
Confidence 3556666677788999999999886543322 23389999999999865542 345677777 667788889
Q ss_pred eeEEEecchhhccC---------------CHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 158 FDAVVCAVSVQYLQ---------------QPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 158 ~D~v~~~~~l~~~~---------------~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
||+|++..+++|+. +...+++++.++|||||.+++..++..
T Consensus 108 fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 163 (215)
T 2pxx_A 108 FDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP 163 (215)
T ss_dssp EEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred ccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence 99999999987765 567899999999999999999887753
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=132.68 Aligned_cols=97 Identities=19% Similarity=0.342 Sum_probs=76.3
Q ss_pred CCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
+.++.+|||||||+|....... .+.+|+|+|+|+.+++.++. ...+...|+ .+++ ++||+|++
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~---~~fD~v~~ 135 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW---EQFD---EPVDRIVS 135 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG---GGCC---CCCSEEEE
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECCh---hhCC---CCeeEEEE
Confidence 4567899999999886443221 24699999999999875542 234556665 4454 78999999
Q ss_pred cchhhcc--CCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 164 AVSVQYL--QQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 164 ~~~l~~~--~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
..+++|+ .++..++++++++|||||.+++..+..
T Consensus 136 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 136 IGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp ESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred eCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 9999999 688999999999999999999987654
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-15 Score=126.46 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=78.2
Q ss_pred CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC--CceEEeecccccCCCCC-CCceeEEEecchhhccCC
Q 023470 97 PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL--EYFIVKDLNQDQKLEFD-HCSFDAVVCAVSVQYLQQ 172 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~--~~~~~~d~~~~~~l~~~-~~s~D~v~~~~~l~~~~~ 172 (282)
++.+|||+|||+|....... .+.+|+|+|+|+.|++.++.. ..+...++......++. +++||+|+++.+++ ..+
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~ 130 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQD 130 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SSC
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-hhh
Confidence 56899999999887544332 467999999999999766543 45666665321122433 44599999999999 789
Q ss_pred HHHHHHHHHHcccCCcEEEEEEcCchh
Q 023470 173 PEKVFAEVFRVLKPGGVFIVSFSNRMF 199 (282)
Q Consensus 173 ~~~~l~~~~r~LkpgG~li~~~~~~~~ 199 (282)
+..++++++++|||||.+++.++++..
T Consensus 131 ~~~~l~~~~~~L~pgG~l~~~~~~~~~ 157 (227)
T 3e8s_A 131 IIELLSAMRTLLVPGGALVIQTLHPWS 157 (227)
T ss_dssp CHHHHHHHHHTEEEEEEEEEEECCTTT
T ss_pred HHHHHHHHHHHhCCCeEEEEEecCccc
Confidence 999999999999999999999887633
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-15 Score=132.17 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=83.2
Q ss_pred HhhCCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCC-CCCcee
Q 023470 92 RQMLRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEF-DHCSFD 159 (282)
Q Consensus 92 ~~~~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~-~~~s~D 159 (282)
...+.++.+|||+|||+|...... .+..+|+|+|+|+.|++.++.. ..+..+|+ ..+++ ++++||
T Consensus 59 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~fD 135 (298)
T 1ri5_A 59 RLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS---YGRHMDLGKEFD 135 (298)
T ss_dssp HHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCT---TTSCCCCSSCEE
T ss_pred HHhCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCc---cccccCCCCCcC
Confidence 345678899999999988644332 2556999999999998755421 35566666 56666 578999
Q ss_pred EEEecchhhc----cCCHHHHHHHHHHcccCCcEEEEEEcCchhHH
Q 023470 160 AVVCAVSVQY----LQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYE 201 (282)
Q Consensus 160 ~v~~~~~l~~----~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~ 201 (282)
+|++.+++|| ..++..+++++.++|||||.+++++++.....
T Consensus 136 ~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 181 (298)
T 1ri5_A 136 VISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVIL 181 (298)
T ss_dssp EEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHH
T ss_pred EEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHH
Confidence 9999999987 45677899999999999999999998865433
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.5e-16 Score=131.73 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=72.7
Q ss_pred CCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCceeEEEe--
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSFDAVVC-- 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~D~v~~-- 163 (282)
..++.+|||||||+|....... ...+++|||+|+.|++.+++. ..+..++... ...++++++||.|+.
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~FD~i~~D~ 136 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWED-VAPTLPDGHFDGILYDT 136 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHH-HGGGSCTTCEEEEEECC
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHh-hcccccccCCceEEEee
Confidence 3578899999999886543332 346899999999999776532 1233344311 233567889999974
Q ss_pred ---cchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 ---AVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ---~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.++++|..+.+.++++++|+|||||+|++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 577888889999999999999999999864
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.9e-15 Score=122.11 Aligned_cols=96 Identities=22% Similarity=0.189 Sum_probs=77.7
Q ss_pred HHHHHHhhCCCCCeEEEeCCcccchhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecch
Q 023470 87 LTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 87 ~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
+...+.. ..++.+|||+|||+|...... ..+|+|+|+|+. ...+...|+ .++++++++||+|++..+
T Consensus 58 ~~~~l~~-~~~~~~vLDiG~G~G~~~~~l--~~~v~~~D~s~~-------~~~~~~~d~---~~~~~~~~~fD~v~~~~~ 124 (215)
T 2zfu_A 58 IARDLRQ-RPASLVVADFGCGDCRLASSI--RNPVHCFDLASL-------DPRVTVCDM---AQVPLEDESVDVAVFCLS 124 (215)
T ss_dssp HHHHHHT-SCTTSCEEEETCTTCHHHHHC--CSCEEEEESSCS-------STTEEESCT---TSCSCCTTCEEEEEEESC
T ss_pred HHHHHhc-cCCCCeEEEECCcCCHHHHHh--hccEEEEeCCCC-------CceEEEecc---ccCCCCCCCEeEEEEehh
Confidence 4444432 356789999999998766553 379999999987 446777887 667888899999999999
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+|+ .++..++++++++|||||.+++....
T Consensus 125 l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~ 153 (215)
T 2zfu_A 125 LMG-TNIRDFLEEANRVLKPGGLLKVAEVS 153 (215)
T ss_dssp CCS-SCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred ccc-cCHHHHHHHHHHhCCCCeEEEEEEcC
Confidence 975 89999999999999999999998653
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-15 Score=125.22 Aligned_cols=101 Identities=18% Similarity=0.183 Sum_probs=76.4
Q ss_pred hCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC-------CCceEEeecccccCCCCCCCceeEEEecc
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
.++++ +|||+|||+|....... .+.+|+|+|+|+.|++.++. ...+...|+ ..+++++++||+|++++
T Consensus 27 ~~~~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~ 102 (202)
T 2kw5_A 27 QIPQG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNL---ADFDIVADAWEGIVSIF 102 (202)
T ss_dssp HSCSS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBT---TTBSCCTTTCSEEEEEC
T ss_pred hCCCC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcCh---hhcCCCcCCccEEEEEh
Confidence 35566 99999999886543322 46799999999999876543 234556666 66777788999999965
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
...+..+...+++++.++|||||.+++.+++..
T Consensus 103 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 135 (202)
T 2kw5_A 103 CHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPE 135 (202)
T ss_dssp CCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred hcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 432234677899999999999999999987653
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.57 E-value=8e-15 Score=125.95 Aligned_cols=163 Identities=15% Similarity=0.118 Sum_probs=104.9
Q ss_pred cccCCCCcCCccccccccccccCchhhcccCCCCCcccccccccc-cccchhHHHHHHHHHHhhC-CCCCeEEEeCCccc
Q 023470 32 TLNDSNNETKQSSAGKIKREVLTNEGRTKLNTYSDRDFYAYPRFV-THVDGGFISTLTNLYRQML-RPGSEVLDLMSSWV 109 (282)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~~ 109 (282)
.+.|.+.+......+++.+.........+...+....+.....+. ..+-..+...+...+...+ .++.+|||+|||+|
T Consensus 18 ~~~C~~~~~~~~~~~Gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G 97 (269)
T 1p91_A 18 SYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDSAEMMQARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEG 97 (269)
T ss_dssp EEECTTCCEEEBCTTSCEECSCSSSSCSCCCSSSHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSCTTCCEEEEETCTTS
T ss_pred EEECCCCCcCCcCCCEEEEeecccccCCCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence 466776666666666666654433322222222222221222221 1111234445555555555 57889999999987
Q ss_pred chhhh---hcCCCeEEEEcCCHHHHHhCCC---CCceEEeecccccCCCCCCCceeEEEecchhhccCCHHHHHHHHHHc
Q 023470 110 SHLPQ---EVSYKRVVGHGLNAQELAKNPR---LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRV 183 (282)
Q Consensus 110 ~~~~~---~~~~~~v~giD~s~~~l~~~~~---~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~ 183 (282)
..... ..++.+|+|+|+|+.|++.++. ...+...|. ..+++++++||+|+++++.. .++++.++
T Consensus 98 ~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~~~-------~l~~~~~~ 167 (269)
T 1p91_A 98 YYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASS---HRLPFSDTSMDAIIRIYAPC-------KAEELARV 167 (269)
T ss_dssp TTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCT---TSCSBCTTCEEEEEEESCCC-------CHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcch---hhCCCCCCceeEEEEeCChh-------hHHHHHHh
Confidence 65433 2347899999999999976653 235677776 67888889999999987633 47999999
Q ss_pred ccCCcEEEEEEcCchhHHHHH
Q 023470 184 LKPGGVFIVSFSNRMFYEKAI 204 (282)
Q Consensus 184 LkpgG~li~~~~~~~~~~~~~ 204 (282)
|||||.+++.+++.....+..
T Consensus 168 L~pgG~l~~~~~~~~~~~~~~ 188 (269)
T 1p91_A 168 VKPGGWVITATPGPRHLMELK 188 (269)
T ss_dssp EEEEEEEEEEEECTTTTHHHH
T ss_pred cCCCcEEEEEEcCHHHHHHHH
Confidence 999999999988875544433
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-15 Score=128.29 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=78.0
Q ss_pred CCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCCCCceeEEEecchh
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
.++.+|||||||+|....... ...+|+|+|+|+.|++.++. ...+...|+ ..+++++++||+|++..++
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l 168 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASM---ETATLPPNTYDLIVIQWTA 168 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCG---GGCCCCSSCEEEEEEESCG
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccH---HHCCCCCCCeEEEEEcchh
Confidence 357899999999886543321 25689999999999876542 235566666 6677888899999999999
Q ss_pred hccC--CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 168 QYLQ--QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 168 ~~~~--~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+|++ ++..++++++++|||||.+++..+
T Consensus 169 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 169 IYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 9995 578899999999999999999875
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.2e-15 Score=129.84 Aligned_cols=96 Identities=18% Similarity=0.350 Sum_probs=75.8
Q ss_pred CCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++.+|||||||+|....... .+.+|+|+|+|+.+++.++. ...+...|+ .+++ ++||+|++.
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~---~~fD~v~~~ 162 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW---EDFA---EPVDRIVSI 162 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG---GGCC---CCCSEEEEE
T ss_pred CCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh---HHCC---CCcCEEEEe
Confidence 467899999999886543322 15799999999999876542 234556665 4443 789999999
Q ss_pred chhhcc--CCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 165 VSVQYL--QQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 165 ~~l~~~--~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.+++|+ +++..+++++.++|||||.+++..+..
T Consensus 163 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 197 (318)
T 2fk8_A 163 EAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS 197 (318)
T ss_dssp SCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred ChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 999999 688999999999999999999987653
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-15 Score=127.41 Aligned_cols=101 Identities=11% Similarity=0.059 Sum_probs=76.2
Q ss_pred hhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC-----CCceEEeecccccCCCCCC-----CceeEE
Q 023470 93 QMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR-----LEYFIVKDLNQDQKLEFDH-----CSFDAV 161 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~-----~~~~~~~d~~~~~~l~~~~-----~s~D~v 161 (282)
..+.++.+|||+|||+|....... .+.+|+|+|+|+.|++.++. ...+.+.|+ .+++... .+||+|
T Consensus 52 ~~~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~~~d~v 128 (245)
T 3ggd_A 52 LLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDG---LVPEQAAQIHSEIGDANI 128 (245)
T ss_dssp TTSCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCCTTEEEEECCT---TCHHHHHHHHHHHCSCEE
T ss_pred hccCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcccCceEEECcc---cccccccccccccCccEE
Confidence 345678899999999886543332 23499999999999976542 345666676 4433211 249999
Q ss_pred EecchhhccC--CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 162 VCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 162 ~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++..+++|++ +...++++++++|||||++++....
T Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 129 YMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp EEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred EEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9999999998 7889999999999999998776554
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-15 Score=125.67 Aligned_cols=109 Identities=25% Similarity=0.314 Sum_probs=82.7
Q ss_pred HHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC---CCceEEeecccccCCCCCCCcee
Q 023470 84 ISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR---LEYFIVKDLNQDQKLEFDHCSFD 159 (282)
Q Consensus 84 ~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~---~~~~~~~d~~~~~~l~~~~~s~D 159 (282)
...+...+...+.++.+|||+|||+|....... .+.+|+|+|+|+.|++.++. ...+...|+ ..+++ +++||
T Consensus 27 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~---~~~~~-~~~~D 102 (239)
T 3bxo_A 27 ASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDATLHQGDM---RDFRL-GRKFS 102 (239)
T ss_dssp HHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTTCEEEECCT---TTCCC-SSCEE
T ss_pred HHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCCCEEEECCH---HHccc-CCCCc
Confidence 334555666666778999999999886543322 23489999999999976653 346677777 56666 67899
Q ss_pred EEEecc-hhhccCC---HHHHHHHHHHcccCCcEEEEEEcC
Q 023470 160 AVVCAV-SVQYLQQ---PEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 160 ~v~~~~-~l~~~~~---~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+|+|.+ +++|+.+ ...++++++++|||||.++++..+
T Consensus 103 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (239)
T 3bxo_A 103 AVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWW 143 (239)
T ss_dssp EEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred EEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 999654 9999954 467999999999999999998644
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-15 Score=120.75 Aligned_cols=94 Identities=23% Similarity=0.225 Sum_probs=75.6
Q ss_pred CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEEecchh
Q 023470 97 PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
++.+|||+|||+|....... .+.+|+|+|+|+.+++.++. ...+...|+ ..+++ +++||+|++..++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~---~~~~~-~~~~D~v~~~~~l 107 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDL---NNLTF-DRQYDFILSTVVL 107 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCG---GGCCC-CCCEEEEEEESCG
T ss_pred CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcch---hhCCC-CCCceEEEEcchh
Confidence 56799999999886443322 36799999999999876542 345666776 56666 7899999999999
Q ss_pred hccC--CHHHHHHHHHHcccCCcEEEEEE
Q 023470 168 QYLQ--QPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 168 ~~~~--~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
+|++ +...+++++.++|||||.+++..
T Consensus 108 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 108 MFLEAKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp GGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 9998 78899999999999999987654
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=124.29 Aligned_cols=101 Identities=18% Similarity=0.151 Sum_probs=76.3
Q ss_pred CCCeEEEeCCcc---cchhh---hhcCCCeEEEEcCCHHHHHhCCC------CCceEEeecccccC--------CCCCCC
Q 023470 97 PGSEVLDLMSSW---VSHLP---QEVSYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQK--------LEFDHC 156 (282)
Q Consensus 97 ~~~~vLDiGcG~---~~~~~---~~~~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~--------l~~~~~ 156 (282)
...+|||||||+ |.... ...++.+|+|+|+|+.|++.++. ...+..+|+..... -.++..
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 347899999999 86432 22367899999999999976542 34567777732100 012235
Q ss_pred ceeEEEecchhhccCC--HHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 157 SFDAVVCAVSVQYLQQ--PEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 157 s~D~v~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+||+|+++.++||+++ +..++++++++|||||+|+++....
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 8999999999999987 7889999999999999999986554
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-15 Score=122.66 Aligned_cols=85 Identities=18% Similarity=0.232 Sum_probs=72.3
Q ss_pred CCCCCeEEEeCCcccchhhhhcCCCeEEEEcCCHHHHHhCCC----CCceEEeecccccCCCC---CCCceeEEEecchh
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPR----LEYFIVKDLNQDQKLEF---DHCSFDAVVCAVSV 167 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~~~~~v~giD~s~~~l~~~~~----~~~~~~~d~~~~~~l~~---~~~s~D~v~~~~~l 167 (282)
++++.+|||+|||. +++|+|+.|++.++. ...+.++|+ .++++ ++++||+|+|++++
T Consensus 10 ~~~g~~vL~~~~g~-------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~---~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS-------------SPVEALKGLVDKLQALTGNEGRVSVENI---KQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT-------------SCHHHHHHHHHHHHHHTTTTSEEEEEEG---GGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc-------------eeeeCCHHHHHHHHHhcccCcEEEEech---hcCccccCCCCCEeEEEECChh
Confidence 56889999999985 239999999976542 357788888 56666 78999999999999
Q ss_pred hcc-CCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 168 QYL-QQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 168 ~~~-~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
||+ +++..++++++|+|||||++++..+
T Consensus 74 ~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 74 GSTTLHSAEILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp TCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence 999 9999999999999999999999644
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=125.67 Aligned_cols=101 Identities=21% Similarity=0.208 Sum_probs=78.5
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC-----------CCceEEeecccccCCCCCCCceeEEEe
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR-----------LEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~-----------~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.++.+|||||||+|....... .+.+|+|+|+|+.|++.++. ...+..+|+ .++++ +++||+|++
T Consensus 81 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~---~~~~~-~~~fD~v~~ 156 (299)
T 3g2m_A 81 PVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDM---SAFAL-DKRFGTVVI 156 (299)
T ss_dssp CCCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBT---TBCCC-SCCEEEEEE
T ss_pred CCCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCch---hcCCc-CCCcCEEEE
Confidence 445699999999887554332 46799999999999976542 345778887 66776 689999997
Q ss_pred c-chhhccC--CHHHHHHHHHHcccCCcEEEEEEcCchhH
Q 023470 164 A-VSVQYLQ--QPEKVFAEVFRVLKPGGVFIVSFSNRMFY 200 (282)
Q Consensus 164 ~-~~l~~~~--~~~~~l~~~~r~LkpgG~li~~~~~~~~~ 200 (282)
. .+++|++ +...++++++++|||||.|++.++++...
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 196 (299)
T 3g2m_A 157 SSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAA 196 (299)
T ss_dssp CHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHH
T ss_pred CCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccc
Confidence 6 5666665 35779999999999999999998876543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-14 Score=137.14 Aligned_cols=112 Identities=15% Similarity=0.227 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-C---CCeEEEEcCCHHHHHhCCC--------------CCceEEee
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-S---YKRVVGHGLNAQELAKNPR--------------LEYFIVKD 144 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~---~~~v~giD~s~~~l~~~~~--------------~~~~~~~d 144 (282)
.++.+.+.+... ++.+|||||||+|....... . ..+|+|+|+|+.|++.++. ...+.++|
T Consensus 709 Rle~LLelL~~~--~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGD 786 (950)
T 3htx_A 709 RVEYALKHIRES--SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGS 786 (950)
T ss_dssp HHHHHHHHHHHS--CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESC
T ss_pred HHHHHHHHhccc--CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECc
Confidence 344444444332 77899999999987655443 2 2699999999999976643 23567777
Q ss_pred cccccCCCCCCCceeEEEecchhhccCCHH--HHHHHHHHcccCCcEEEEEEcCchhH
Q 023470 145 LNQDQKLEFDHCSFDAVVCAVSVQYLQQPE--KVFAEVFRVLKPGGVFIVSFSNRMFY 200 (282)
Q Consensus 145 ~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~--~~l~~~~r~LkpgG~li~~~~~~~~~ 200 (282)
+ ..+++.+++||+|++..+++|++++. .++++++|+|||| .+++++|+..+.
T Consensus 787 a---~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN 840 (950)
T 3htx_A 787 I---LEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFN 840 (950)
T ss_dssp T---TSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGH
T ss_pred h---HhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhh
Confidence 7 77888889999999999999998766 4999999999999 999999886543
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.9e-15 Score=125.31 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=73.2
Q ss_pred CCCCeEEEeCCcccchhhhhc-CC-CeEEEEcCCHHHHHhCCC----C--------------------------------
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SY-KRVVGHGLNAQELAKNPR----L-------------------------------- 137 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~-~~v~giD~s~~~l~~~~~----~-------------------------------- 137 (282)
.++.+|||+|||+|....... .+ .+|+|+|+|+.|++.++. .
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 456789999999876543322 33 489999999999876531 1
Q ss_pred -C-ceEEeecccccCC-CCCC---CceeEEEecchhh----ccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 138 -E-YFIVKDLNQDQKL-EFDH---CSFDAVVCAVSVQ----YLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 138 -~-~~~~~d~~~~~~l-~~~~---~s~D~v~~~~~l~----~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
. .+..+|+ ... ++++ ++||+|++.++++ +++++..++++++++|||||.+++...
T Consensus 135 ~v~~~~~~d~---~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 135 AIKQVLKCDV---TQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp HEEEEEECCT---TSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hheeEEEeee---ccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 2 4566666 333 3344 8999999999999 555778899999999999999998864
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-14 Score=123.87 Aligned_cols=95 Identities=15% Similarity=0.100 Sum_probs=75.2
Q ss_pred CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC-------CCceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 97 PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
++.+|||+|||+|....... .+.+|+|+|+|+.+++.++. ...+...|+ ..+++ +++||+|+++.+++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~-~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDI---NAANI-QENYDFIVSTVVFM 195 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCG---GGCCC-CSCEEEEEECSSGG
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEecc---ccccc-cCCccEEEEccchh
Confidence 77899999999886543322 46799999999999875542 345667777 55555 78999999999999
Q ss_pred ccCC--HHHHHHHHHHcccCCcEEEEEEc
Q 023470 169 YLQQ--PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 169 ~~~~--~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|+++ ...+++++.++|||||.+++...
T Consensus 196 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 196 FLNRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp GSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9964 45899999999999999877643
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.5e-15 Score=124.29 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=71.0
Q ss_pred CCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCC--CCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKL--EFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l--~~~~~s~D~v~~ 163 (282)
..++.+|||||||+|....... ...+|+|+|+|+.|++.++.. ..+..+|. .++ ++++++||+|++
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~fD~V~~ 134 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLW---EDVAPTLPDGHFDGILY 134 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCH---HHHGGGSCTTCEEEEEE
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCH---HHhhcccCCCceEEEEE
Confidence 4577899999999987544332 344899999999998765432 24455555 555 788899999999
Q ss_pred -cchh--h--ccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 164 -AVSV--Q--YLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 164 -~~~l--~--~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
.+++ + |..+.+.++++++|+|||||++++..
T Consensus 135 d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 135 DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred CCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 5554 1 22234468999999999999998763
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-14 Score=115.87 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCC-
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLE- 152 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~- 152 (282)
.......++...++++.+|||+|||+|....... .+.+|+|+|+|+.|++.++. +..+...+. ..++
T Consensus 8 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~---~~l~~ 84 (185)
T 3mti_A 8 PIHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGH---ENLDH 84 (185)
T ss_dssp HHHHHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCG---GGGGG
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcH---HHHHh
Confidence 4444555666778889999999999886543322 37899999999999976542 223444333 3332
Q ss_pred CCCCceeEEEecc-hhhc--------cCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 153 FDHCSFDAVVCAV-SVQY--------LQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 153 ~~~~s~D~v~~~~-~l~~--------~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+.+++||+|+++. .+++ ..+...+++++.++|||||++++.+.
T Consensus 85 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 85 YVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp TCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 4468899999884 2222 12345689999999999999998753
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.8e-14 Score=122.17 Aligned_cols=99 Identities=13% Similarity=0.093 Sum_probs=73.9
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCC--ceEEeecccccCCCC-----CCCceeEEEecch
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLE--YFIVKDLNQDQKLEF-----DHCSFDAVVCAVS 166 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~--~~~~~d~~~~~~l~~-----~~~s~D~v~~~~~ 166 (282)
+.++.+|||||||+|....... .+.+|+|+|+|+.|++.++.+. .....+. .+++. .+++||+|+++.+
T Consensus 43 l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~---~~~~~~~~~~~~~~fD~Vv~~~~ 119 (261)
T 3iv6_A 43 IVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRCVTIDL---LDITAEIPKELAGHFDFVLNDRL 119 (261)
T ss_dssp CCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSCCEEEE---CCTTSCCCGGGTTCCSEEEEESC
T ss_pred CCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhccceeee---eecccccccccCCCccEEEEhhh
Confidence 4578899999999986543322 5789999999999997665322 1334444 22222 2578999999999
Q ss_pred hhccC--CHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 167 VQYLQ--QPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 167 l~~~~--~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
++|+. +...+++++.++| |||++++++...
T Consensus 120 l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g 151 (261)
T 3iv6_A 120 INRFTTEEARRACLGMLSLV-GSGTVRASVKLG 151 (261)
T ss_dssp GGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred hHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence 99985 4556999999999 999999997654
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-14 Score=117.68 Aligned_cols=107 Identities=11% Similarity=0.103 Sum_probs=79.4
Q ss_pred HHHHHHHHHhhCCCCCeEEEeCCcccchhhhh---cCCCeEEEEcCCHHHHHhCCC------CC-ceEEeecccccCCCC
Q 023470 84 ISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQE---VSYKRVVGHGLNAQELAKNPR------LE-YFIVKDLNQDQKLEF 153 (282)
Q Consensus 84 ~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~---~~~~~v~giD~s~~~l~~~~~------~~-~~~~~d~~~~~~l~~ 153 (282)
++.+...+...+++..+|||+|||+|...... .+..+|+|+|+|+.|++.++. .. ++.+.|. ... .
T Consensus 36 ld~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~---~~~-~ 111 (200)
T 3fzg_A 36 LNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNK---ESD-V 111 (200)
T ss_dssp HHHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECC---HHH-H
T ss_pred HHHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecc---ccc-C
Confidence 33444445556778899999999988654443 578899999999999976542 22 3455554 222 3
Q ss_pred CCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 154 DHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 154 ~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+.++||+|++..++||+++.+..+..+++.|||||.+| ++|
T Consensus 112 ~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfI-Sfp 152 (200)
T 3fzg_A 112 YKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVI-SFP 152 (200)
T ss_dssp TTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEE-EEE
T ss_pred CCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEE-EeC
Confidence 56889999999999999666678889999999998765 444
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-14 Score=119.42 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=74.5
Q ss_pred CCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHh----CC------C--CCceEEeecccccCCCCCCCcee
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAK----NP------R--LEYFIVKDLNQDQKLEFDHCSFD 159 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~----~~------~--~~~~~~~d~~~~~~l~~~~~s~D 159 (282)
..++.+|||+|||+|... +...++.+|+|+|+|+.|++. ++ . +..+..+|+ .++++++++ |
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~---~~l~~~~~~-d 100 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATA---ERLPPLSGV-G 100 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCS---TTCCSCCCE-E
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecch---hhCCCCCCC-C
Confidence 457789999999988643 343457899999999998764 11 1 235677777 678887766 6
Q ss_pred EEEec---chh--hccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 160 AVVCA---VSV--QYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 160 ~v~~~---~~l--~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.|... ..+ +|++++..++++++|+|||||.+++++...
T Consensus 101 ~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 143 (218)
T 3mq2_A 101 ELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLH 143 (218)
T ss_dssp EEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred EEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccc
Confidence 66643 334 388899999999999999999999986543
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.6e-14 Score=121.72 Aligned_cols=94 Identities=19% Similarity=0.327 Sum_probs=70.6
Q ss_pred CCCeEEEeCCcccch-------hhhhcC----CCeEEEEcCCHHHHHhCCCC----------------------------
Q 023470 97 PGSEVLDLMSSWVSH-------LPQEVS----YKRVVGHGLNAQELAKNPRL---------------------------- 137 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~-------~~~~~~----~~~v~giD~s~~~l~~~~~~---------------------------- 137 (282)
+..+|||+|||+|.. ++...+ +.+|+|+|+|++||+.|+..
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 457899999999862 222223 46999999999999876532
Q ss_pred -----------CceEEeecccccCCCCC-CCceeEEEecchhhccCCH--HHHHHHHHHcccCCcEEEEE
Q 023470 138 -----------EYFIVKDLNQDQKLEFD-HCSFDAVVCAVSVQYLQQP--EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 138 -----------~~~~~~d~~~~~~l~~~-~~s~D~v~~~~~l~~~~~~--~~~l~~~~r~LkpgG~li~~ 193 (282)
..|...|+ .+.+++ .++||+|+|.++++|+++. .+++++++++|||||.|++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl---~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNL---LEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCT---TCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEeccc---CCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 12334444 333444 5789999999999999755 67999999999999999985
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-13 Score=107.98 Aligned_cols=103 Identities=20% Similarity=0.105 Sum_probs=78.8
Q ss_pred HHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecc
Q 023470 87 LTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 87 ~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
+.+.+.....++.+|||+|||+|....... .+ +|+|+|+|+.|++. .....+..+|+ .+ ++++++||+|+++.
T Consensus 13 l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~-~~~~~~~~~d~---~~-~~~~~~fD~i~~n~ 86 (170)
T 3q87_B 13 LMDALEREGLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES-HRGGNLVRADL---LC-SINQESVDVVVFNP 86 (170)
T ss_dssp HHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT-CSSSCEEECST---TT-TBCGGGCSEEEECC
T ss_pred HHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc-ccCCeEEECCh---hh-hcccCCCCEEEECC
Confidence 444444333467799999999987654443 34 99999999999998 44567788887 34 55568999999998
Q ss_pred hhhccCCH---------HHHHHHHHHcccCCcEEEEEEcC
Q 023470 166 SVQYLQQP---------EKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 166 ~l~~~~~~---------~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.+++.++. ..+++++.+.| |||.+++..+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~ 125 (170)
T 3q87_B 87 PYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE 125 (170)
T ss_dssp CCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred CCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence 88876554 56899999999 99999998654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=116.78 Aligned_cols=107 Identities=29% Similarity=0.419 Sum_probs=77.4
Q ss_pred HHHHHHhhC-CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC-------CCceEEeecccccCCCCCCCc
Q 023470 87 LTNLYRQML-RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQDQKLEFDHCS 157 (282)
Q Consensus 87 ~~~~~~~~~-~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~~~~l~~~~~s 157 (282)
+...+.... .++.+|||+|||+|....... .+.+|+|+|+|+.|++.++. ...+..+|+ .+++++ ++
T Consensus 30 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~---~~~~~~-~~ 105 (252)
T 1wzn_A 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV---LEIAFK-NE 105 (252)
T ss_dssp HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCG---GGCCCC-SC
T ss_pred HHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECCh---hhcccC-CC
Confidence 334444332 356899999999887543322 46799999999999876542 245677777 556654 68
Q ss_pred eeEEEecc-hhhccC--CHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 158 FDAVVCAV-SVQYLQ--QPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 158 ~D~v~~~~-~l~~~~--~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
||+|++.+ +++|.. +...++++++++|||||.+++++++.
T Consensus 106 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 148 (252)
T 1wzn_A 106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCW 148 (252)
T ss_dssp EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred ccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccch
Confidence 99999875 444543 55679999999999999999988763
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=118.69 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=74.3
Q ss_pred hCCCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEE
Q 023470 94 MLRPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
.++++.+|||||||+|.. +.....+++|+|+|+|++|++.|++ +..+..+|. .+++ +++||+|+
T Consensus 119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa---~~l~--d~~FDvV~ 193 (298)
T 3fpf_A 119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDE---TVID--GLEFDVLM 193 (298)
T ss_dssp TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCG---GGGG--GCCCSEEE
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECch---hhCC--CCCcCEEE
Confidence 467899999999997642 2233468899999999999977653 234566666 4554 68999999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+... +++..+++++++|+|||||++++...+
T Consensus 194 ~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~~ 224 (298)
T 3fpf_A 194 VAAL---AEPKRRVFRNIHRYVDTETRIIYRTYT 224 (298)
T ss_dssp ECTT---CSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred ECCC---ccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence 8654 578999999999999999999987643
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=116.34 Aligned_cols=100 Identities=15% Similarity=0.161 Sum_probs=74.6
Q ss_pred CCCCCeEEEeCCcccchh---hhhc-CCCeEEEEcCCHHHHHhC----CC--CCceEEeecccccCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEV-SYKRVVGHGLNAQELAKN----PR--LEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~-~~~~v~giD~s~~~l~~~----~~--~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
++|+.+|||+|||+|... +... +..+|+|+|+|++|++.+ ++ +...+..+.......++..+++|+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 568999999999987643 3332 678999999999998543 22 2344555554434556677899999875
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
. .|..+...++.+++++|||||++++++..
T Consensus 155 ~--~~~~~~~~~l~~~~r~LKpGG~lvI~ik~ 184 (233)
T 4df3_A 155 V--AQPEQAAIVVRNARFFLRDGGYMLMAIKA 184 (233)
T ss_dssp C--CCTTHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred c--cCChhHHHHHHHHHHhccCCCEEEEEEec
Confidence 4 45567788999999999999999998643
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-14 Score=119.30 Aligned_cols=108 Identities=13% Similarity=0.103 Sum_probs=77.3
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccC-CC--CCCCceeEEE
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQK-LE--FDHCSFDAVV 162 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~-l~--~~~~s~D~v~ 162 (282)
++.+|||||||+|... +...+..+|+|+|+|+.|++.++. +..+..+|+ .+ ++ +++++||.|+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da---~~~l~~~~~~~~~d~v~ 110 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDA---VEVLHKMIPDNSLRMVQ 110 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCH---HHHHHHHSCTTCEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCH---HHHHHHHcCCCChheEE
Confidence 5678999999988654 334477899999999999865432 234555555 33 23 6789999999
Q ss_pred ecchhhccCCH--------HHHHHHHHHcccCCcEEEEEEcCchhHHHHHHhh
Q 023470 163 CAVSVQYLQQP--------EKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAW 207 (282)
Q Consensus 163 ~~~~l~~~~~~--------~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~ 207 (282)
+++...+.... ..++++++|+|||||.+++.+.+..+........
T Consensus 111 ~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~ 163 (218)
T 3dxy_A 111 LFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVM 163 (218)
T ss_dssp EESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHH
T ss_pred EeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH
Confidence 98654433221 2599999999999999999987765555444333
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-13 Score=109.67 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=75.8
Q ss_pred CCCCCeEEEeCCcccchh---hhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCC--------CCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLE--------FDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~--------~~~~s~D~v~ 162 (282)
+.++.+|||+|||+|... +... +..+++|+|+|+ +++. ....+...|+ .+.+ +++++||+|+
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--~~~~~~~~d~---~~~~~~~~~~~~~~~~~~D~i~ 93 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--VGVDFLQGDF---RDELVMKALLERVGDSKVQVVM 93 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC--TTEEEEESCT---TSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc--CcEEEEEccc---ccchhhhhhhccCCCCceeEEE
Confidence 457889999999987643 3332 458999999999 7654 3345666666 4444 6678999999
Q ss_pred ecchhhccCCH-----------HHHHHHHHHcccCCcEEEEEEcCch
Q 023470 163 CAVSVQYLQQP-----------EKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 163 ~~~~l~~~~~~-----------~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
+..++++..+. ..+++++.++|||||.+++..+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 140 (180)
T 1ej0_A 94 SDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE 140 (180)
T ss_dssp ECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred ECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 99998888766 6899999999999999999876543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.5e-14 Score=117.84 Aligned_cols=93 Identities=14% Similarity=0.144 Sum_probs=73.5
Q ss_pred HHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC---CCceEEeecccccCCCCC-CCceeEEEecc
Q 023470 91 YRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR---LEYFIVKDLNQDQKLEFD-HCSFDAVVCAV 165 (282)
Q Consensus 91 ~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~---~~~~~~~d~~~~~~l~~~-~~s~D~v~~~~ 165 (282)
+...++++.+|||+|||+|....... .+.+|+|+|+|+.|++.++. ...+...|+. ..++++ +++||+|+++
T Consensus 42 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~--~~~~~~~~~~fD~v~~~- 118 (226)
T 3m33_A 42 LSRLLTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGK--GELPAGLGAPFGLIVSR- 118 (226)
T ss_dssp HHHHCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEEECCSC--SSCCTTCCCCEEEEEEE-
T ss_pred HHhcCCCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEEEcchh--hccCCcCCCCEEEEEeC-
Confidence 34456788999999999887543322 36799999999999976653 3567777774 357777 8899999997
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li 191 (282)
.++..++++++++|||||.++
T Consensus 119 -----~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 119 -----RGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp -----SCCSGGGGGHHHHEEEEEEEE
T ss_pred -----CCHHHHHHHHHHHcCCCcEEE
Confidence 477889999999999999999
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-13 Score=108.55 Aligned_cols=97 Identities=11% Similarity=0.082 Sum_probs=71.0
Q ss_pred CCCCCeEEEeCCcccchhh---hhcCCCeEEEEcCCHHHHHhCCCC------C-c-eEEeecccccCCCCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHLP---QEVSYKRVVGHGLNAQELAKNPRL------E-Y-FIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~---~~~~~~~v~giD~s~~~l~~~~~~------~-~-~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
+.++.+|||+|||+|.... ...++.+|+|+|+|+.+++.++.+ . . +...+.. ..++..+++||+|++
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~D~i~~ 100 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAP--RAFDDVPDNPDVIFI 100 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTT--GGGGGCCSCCSEEEE
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchH--hhhhccCCCCCEEEE
Confidence 4567899999999886543 333578999999999998765421 1 1 3333331 233433378999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
..+++| ..+++++.++|||||.+++.....
T Consensus 101 ~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~ 130 (178)
T 3hm2_A 101 GGGLTA----PGVFAAAWKRLPVGGRLVANAVTV 130 (178)
T ss_dssp CC-TTC----TTHHHHHHHTCCTTCEEEEEECSH
T ss_pred CCcccH----HHHHHHHHHhcCCCCEEEEEeecc
Confidence 999988 679999999999999999987654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-13 Score=112.76 Aligned_cols=100 Identities=13% Similarity=0.100 Sum_probs=75.5
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCC--CCCCceeEEE
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLE--FDHCSFDAVV 162 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~--~~~~s~D~v~ 162 (282)
.++.+|||||||+|... +...+..+|+|+|+|+.+++.++. +..+..+|+ ..++ +++++||+|+
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~D~i~ 116 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG---SDLTDYFEDGEIDRLY 116 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCS---SCGGGTSCTTCCSEEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCH---HHHHhhcCCCCCCEEE
Confidence 35788999999988754 344467899999999999876542 335666666 4555 6678999999
Q ss_pred ecchhhccC--------CHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 163 CAVSVQYLQ--------QPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 163 ~~~~l~~~~--------~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
+++...+.. ....+++++.++|||||.+++.+.+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (214)
T 1yzh_A 117 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG 160 (214)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH
T ss_pred EECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHH
Confidence 997654332 236799999999999999999876543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-13 Score=115.95 Aligned_cols=103 Identities=13% Similarity=0.101 Sum_probs=73.0
Q ss_pred CCCCeEEEeCCcccchhh---hhcCCCeEEEEcCCHHHHHhCC--------------CCCceEEeecccccC-CC--CCC
Q 023470 96 RPGSEVLDLMSSWVSHLP---QEVSYKRVVGHGLNAQELAKNP--------------RLEYFIVKDLNQDQK-LE--FDH 155 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~---~~~~~~~v~giD~s~~~l~~~~--------------~~~~~~~~d~~~~~~-l~--~~~ 155 (282)
.++.+|||||||+|..+. ...+...|+|+|+|+.|++.++ .+..+..+|+ .. ++ +++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~---~~~l~~~~~~ 121 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNA---MKHLPNFFYK 121 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCT---TTCHHHHCCT
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcH---HHhhhhhCCC
Confidence 456789999999887543 3346789999999999986432 1235566666 43 55 678
Q ss_pred CceeEEEecchhhccCC--------HHHHHHHHHHcccCCcEEEEEEcCchhHH
Q 023470 156 CSFDAVVCAVSVQYLQQ--------PEKVFAEVFRVLKPGGVFIVSFSNRMFYE 201 (282)
Q Consensus 156 ~s~D~v~~~~~l~~~~~--------~~~~l~~~~r~LkpgG~li~~~~~~~~~~ 201 (282)
++||.|++.+...|... ...+++++.++|||||.|++.+.+..+..
T Consensus 122 ~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~ 175 (235)
T 3ckk_A 122 GQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHD 175 (235)
T ss_dssp TCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHH
T ss_pred cCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHH
Confidence 99999998664333211 14699999999999999999987664444
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-13 Score=110.25 Aligned_cols=100 Identities=12% Similarity=0.125 Sum_probs=75.4
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC----------CceEEeecccccCCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL----------EYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~----------~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++.+|||+|||+|....... .+.+++|+|+|+.+++.++.. ..+...|+ .. ++++++||+|+++
T Consensus 51 ~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~---~~-~~~~~~~D~v~~~ 126 (194)
T 1dus_A 51 DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL---YE-NVKDRKYNKIITN 126 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST---TT-TCTTSCEEEEEEC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECch---hc-ccccCCceEEEEC
Confidence 367899999999886433221 278999999999988654421 34555555 23 3346789999999
Q ss_pred chhhc-cCCHHHHHHHHHHcccCCcEEEEEEcCchh
Q 023470 165 VSVQY-LQQPEKVFAEVFRVLKPGGVFIVSFSNRMF 199 (282)
Q Consensus 165 ~~l~~-~~~~~~~l~~~~r~LkpgG~li~~~~~~~~ 199 (282)
..++| ..+...+++++.++|||||.+++..++...
T Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 162 (194)
T 1dus_A 127 PPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQG 162 (194)
T ss_dssp CCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHH
T ss_pred CCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence 98887 456778999999999999999999877533
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-13 Score=117.88 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=75.0
Q ss_pred CCCCCeEEEeCCcccchhhh---hc-CCCeEEEEcCCHH------HHHhCCC---------CCceEEee-cccccCCCCC
Q 023470 95 LRPGSEVLDLMSSWVSHLPQ---EV-SYKRVVGHGLNAQ------ELAKNPR---------LEYFIVKD-LNQDQKLEFD 154 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~---~~-~~~~v~giD~s~~------~l~~~~~---------~~~~~~~d-~~~~~~l~~~ 154 (282)
+.++.+|||||||+|..... .. +..+|+|+|+|+. |++.++. ...+...| ... ..++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~ 119 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSD-DLGPIA 119 (275)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTT-CCGGGT
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhh-ccCCCC
Confidence 56788999999998865433 22 3479999999986 7754431 22445554 211 466777
Q ss_pred CCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 155 HCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 155 ~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+++||+|++..+++|++++..+++.+.++++|||++++...
T Consensus 120 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 120 DQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp TCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred CCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 89999999999999999999877777777888999998754
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-13 Score=114.54 Aligned_cols=101 Identities=12% Similarity=0.122 Sum_probs=74.4
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCC--CCCCceeEEEe
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLE--FDHCSFDAVVC 163 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~--~~~~s~D~v~~ 163 (282)
++.+|||||||+|... +...+..+|+|+|+|+.|++.++. +..+..+|+ ..++ +++++||.|++
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~---~~l~~~~~~~~~d~v~~ 114 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA---DTLTDVFEPGEVKRVYL 114 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCG---GGHHHHCCTTSCCEEEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCH---HHHHhhcCcCCcCEEEE
Confidence 5778999999988654 333468899999999999876542 234556665 4454 66789999998
Q ss_pred cchhhccCC--------HHHHHHHHHHcccCCcEEEEEEcCchhH
Q 023470 164 AVSVQYLQQ--------PEKVFAEVFRVLKPGGVFIVSFSNRMFY 200 (282)
Q Consensus 164 ~~~l~~~~~--------~~~~l~~~~r~LkpgG~li~~~~~~~~~ 200 (282)
++...+... ...+++++.++|||||.+++.+.+....
T Consensus 115 ~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~ 159 (213)
T 2fca_A 115 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLF 159 (213)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHH
T ss_pred ECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence 765433321 3679999999999999999998665443
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-13 Score=112.68 Aligned_cols=105 Identities=12% Similarity=0.028 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhhh--hcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCC
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQ--EVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLE 152 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~--~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~ 152 (282)
....+...+...+.++.+|||+|||+|..... ..+..+|+|+|+|+.|++.++.+ ..+...|+ ..
T Consensus 46 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~-- 120 (205)
T 3grz_A 46 TTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSL---LA-- 120 (205)
T ss_dssp HHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESST---TT--
T ss_pred cHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccc---cc--
Confidence 34455666666677889999999998864432 23556999999999998765422 34555555 22
Q ss_pred CCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 153 FDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 153 ~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+.+++||+|+++..++++ ..+++++.++|||||+++++..
T Consensus 121 ~~~~~fD~i~~~~~~~~~---~~~l~~~~~~L~~gG~l~~~~~ 160 (205)
T 3grz_A 121 DVDGKFDLIVANILAEIL---LDLIPQLDSHLNEDGQVIFSGI 160 (205)
T ss_dssp TCCSCEEEEEEESCHHHH---HHHGGGSGGGEEEEEEEEEEEE
T ss_pred cCCCCceEEEECCcHHHH---HHHHHHHHHhcCCCCEEEEEec
Confidence 345899999999988875 7899999999999999998744
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-13 Score=110.97 Aligned_cols=113 Identities=14% Similarity=0.017 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHhhC-CCCCeEEEeCCcccchhh--hhcCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccC
Q 023470 82 GFISTLTNLYRQML-RPGSEVLDLMSSWVSHLP--QEVSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQK 150 (282)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~vLDiGcG~~~~~~--~~~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~ 150 (282)
...+.+...+.... .++.+|||+|||+|.... ...+..+|+|+|+|+.|++.++. ...+..+|+ .+
T Consensus 28 ~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~ 104 (189)
T 3p9n_A 28 RVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAV---AA 104 (189)
T ss_dssp HHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCH---HH
T ss_pred HHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccH---HH
Confidence 44555555555432 367899999999886543 22355689999999999976543 235666666 33
Q ss_pred CC--CCCCceeEEEecchhhcc-CCHHHHHHHHHH--cccCCcEEEEEEcCc
Q 023470 151 LE--FDHCSFDAVVCAVSVQYL-QQPEKVFAEVFR--VLKPGGVFIVSFSNR 197 (282)
Q Consensus 151 l~--~~~~s~D~v~~~~~l~~~-~~~~~~l~~~~r--~LkpgG~li~~~~~~ 197 (282)
+. +++++||+|+++..+++. .+...+++++.+ +|||||.+++..+..
T Consensus 105 ~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 105 VVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp HHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred HHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 32 346889999999887775 678889999999 999999999987654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.4e-13 Score=115.49 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=70.8
Q ss_pred CeEEEeCCcc--cc---hhh-hhcCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccC-CCCC--CCcee--
Q 023470 99 SEVLDLMSSW--VS---HLP-QEVSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQK-LEFD--HCSFD-- 159 (282)
Q Consensus 99 ~~vLDiGcG~--~~---~~~-~~~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~-l~~~--~~s~D-- 159 (282)
.+|||||||+ +. .++ ...+..+|+++|.|+.|++.++. ...++..|+..... +..+ .++||
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~ 159 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDLT 159 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCTT
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCcC
Confidence 5799999996 21 122 23478999999999999987753 23567777732100 0101 23344
Q ss_pred ---EEEecchhhccCC---HHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 160 ---AVVCAVSVQYLQQ---PEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 160 ---~v~~~~~l~~~~~---~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.|+++.+|||+++ +..+++++++.|+|||+|+++....
T Consensus 160 ~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~ 203 (277)
T 3giw_A 160 RPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA 203 (277)
T ss_dssp SCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred CcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 6889999999987 5679999999999999999986543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-13 Score=111.90 Aligned_cols=99 Identities=17% Similarity=0.059 Sum_probs=66.3
Q ss_pred CCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHH----HhCC--CCCceEEeecccccC-CCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQEL----AKNP--RLEYFIVKDLNQDQK-LEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l----~~~~--~~~~~~~~d~~~~~~-l~~~~~s~D~v~~~ 164 (282)
+.++.+|||+|||+|... +...+..+|+|+|+|+.|+ +.++ .+..+..+|...... .++. ++||+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~ 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIYQD 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEEEe
Confidence 457889999999998643 3333457999999999765 3332 223344555521111 2444 789999998
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
. .++ .+...++++++|+|||||++++.++.
T Consensus 134 ~-~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~ 163 (210)
T 1nt2_A 134 I-AQK-NQIEILKANAEFFLKEKGEVVIMVKA 163 (210)
T ss_dssp C-CST-THHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred c-cCh-hHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 3 222 23344699999999999999999653
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.8e-13 Score=118.38 Aligned_cols=95 Identities=16% Similarity=0.081 Sum_probs=73.0
Q ss_pred CCCeEEEeCCcccchhh---hhcCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEec
Q 023470 97 PGSEVLDLMSSWVSHLP---QEVSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~---~~~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
...+|||||||+|.... ...+..+++++|+ +.+++.++. ...+..+|+.. ..+|++ ++||+|++.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLD-RDVPFP-TGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCS-SSCCCC-CCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccc-cCCCCC-CCcCEEEEe
Confidence 56799999999886543 3347889999999 888865442 23566777632 112455 789999999
Q ss_pred chhhccCCHH--HHHHHHHHcccCCcEEEEEE
Q 023470 165 VSVQYLQQPE--KVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 165 ~~l~~~~~~~--~~l~~~~r~LkpgG~li~~~ 194 (282)
.++|++++.+ .++++++++|||||++++..
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999998664 68999999999999998864
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=8.9e-14 Score=124.65 Aligned_cols=102 Identities=18% Similarity=0.261 Sum_probs=77.5
Q ss_pred HHHhhCCCCCeEEEeCCc------ccc---hhhhh-cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCC-----
Q 023470 90 LYRQMLRPGSEVLDLMSS------WVS---HLPQE-VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFD----- 154 (282)
Q Consensus 90 ~~~~~~~~~~~vLDiGcG------~~~---~~~~~-~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~----- 154 (282)
.+.....++.+||||||| +|. .+... .+..+|+|+|+|++|.. ...+..+.++|. .++++.
T Consensus 209 lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~-~~~rI~fv~GDa---~dlpf~~~l~~ 284 (419)
T 3sso_A 209 HFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV-DELRIRTIQGDQ---NDAEFLDRIAR 284 (419)
T ss_dssp HHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG-CBTTEEEEECCT---TCHHHHHHHHH
T ss_pred HHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh-cCCCcEEEEecc---cccchhhhhhc
Confidence 344444567899999999 433 22222 36889999999999853 334557888888 666665
Q ss_pred -CCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 155 -HCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 155 -~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+++||+|+|.. .|+..+...+|++++|+|||||++++....
T Consensus 285 ~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 285 RYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp HHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred ccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 68999999875 467778889999999999999999998654
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-13 Score=112.98 Aligned_cols=105 Identities=15% Similarity=0.166 Sum_probs=75.5
Q ss_pred HHhhCCCCCeEEEeCCc-ccchhhhhc-C-CCeEEEEcCCHHHHHhCCC-------CCceEEeecccccCCCCCCCceeE
Q 023470 91 YRQMLRPGSEVLDLMSS-WVSHLPQEV-S-YKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQDQKLEFDHCSFDA 160 (282)
Q Consensus 91 ~~~~~~~~~~vLDiGcG-~~~~~~~~~-~-~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~~~~l~~~~~s~D~ 160 (282)
+...++++.+|||+||| +|....... . +.+|+|+|+|+.+++.++. ...+..+|.. ...++++++||+
T Consensus 49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~--~~~~~~~~~fD~ 126 (230)
T 3evz_A 49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG--IIKGVVEGTFDV 126 (230)
T ss_dssp HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSC--SSTTTCCSCEEE
T ss_pred hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCch--hhhhcccCceeE
Confidence 44556788999999999 987543322 2 6899999999999876542 2456666652 122455689999
Q ss_pred EEecchhhccCC-------------------HHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 161 VVCAVSVQYLQQ-------------------PEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 161 v~~~~~l~~~~~-------------------~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
|+++-..++..+ ...+++++.++|||||++++.+++.
T Consensus 127 I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 182 (230)
T 3evz_A 127 IFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK 182 (230)
T ss_dssp EEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC
T ss_pred EEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence 999866554432 3779999999999999999987764
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=108.02 Aligned_cols=97 Identities=19% Similarity=0.030 Sum_probs=73.2
Q ss_pred CCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
+.++.+|||+|||+|... +...+..+|+|+|+|+.+++.++. ...+...|. .+.....++||+|++
T Consensus 38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~D~i~~ 114 (204)
T 3e05_A 38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFA---PEGLDDLPDPDRVFI 114 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCT---TTTCTTSCCCSEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCCh---hhhhhcCCCCCEEEE
Confidence 457889999999988643 333356899999999999876543 234555555 232223367999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
..+++ +...+++++.++|||||++++.....
T Consensus 115 ~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~ 145 (204)
T 3e05_A 115 GGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTL 145 (204)
T ss_dssp SCCTT---CHHHHHHHHHHHCCTTCEEEEEECBH
T ss_pred CCCCc---CHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 98775 77899999999999999999986643
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-13 Score=121.49 Aligned_cols=98 Identities=19% Similarity=0.223 Sum_probs=76.4
Q ss_pred CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC-------CCceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 97 PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
++.+|||+|||+|....... .+.+|+|+|+|+.+++.++. ...+...|+ .+...++++||+|+++..+|
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~---~~~~~~~~~fD~Ii~npp~~ 309 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDV---DEALTEEARFDIIVTNPPFH 309 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECST---TTTSCTTCCEEEEEECCCCC
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcch---hhccccCCCeEEEEECCchh
Confidence 67899999999886543322 46799999999999876542 245667776 55555568999999999888
Q ss_pred c-----cCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 169 Y-----LQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 169 ~-----~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+ ..+...+++++.++|||||.++++....
T Consensus 310 ~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 310 VGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp TTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred hcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 8 4466789999999999999999986543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-13 Score=111.25 Aligned_cols=106 Identities=16% Similarity=0.298 Sum_probs=75.6
Q ss_pred HHHHHHhhCCCCCeEEEeCCcccchh---hhhc-CCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCC-
Q 023470 87 LTNLYRQMLRPGSEVLDLMSSWVSHL---PQEV-SYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLE- 152 (282)
Q Consensus 87 ~~~~~~~~~~~~~~vLDiGcG~~~~~---~~~~-~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~- 152 (282)
...++...++++.+|||+|||+|... +... +..+|+|+|+|+.+++.++.+ ..+...|+ ..++
T Consensus 12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~ 88 (197)
T 3eey_A 12 SHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGH---QNMDK 88 (197)
T ss_dssp HHHHHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCG---GGGGG
T ss_pred HHHHHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH---HHHhh
Confidence 33444556778899999999988643 3322 456999999999998765422 34556665 4443
Q ss_pred CCCCceeEEEecchhh---------ccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 153 FDHCSFDAVVCAVSVQ---------YLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 153 ~~~~s~D~v~~~~~l~---------~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+.+++||+|+++..+. +..+...+++++.++|||||++++...
T Consensus 89 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 89 YIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp TCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 4568899999987541 111345699999999999999998753
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=116.69 Aligned_cols=93 Identities=14% Similarity=0.101 Sum_probs=72.1
Q ss_pred CCCCCeEEEeCCcccchhhh--hcCCCeEEEEcCCHHHHHhCC---------CCCceEEeecccccCCCCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHLPQ--EVSYKRVVGHGLNAQELAKNP---------RLEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~--~~~~~~v~giD~s~~~l~~~~---------~~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
+.++.+|||||||+|..... ..+..+|+|+|+|+ |++.++ ....+..+|+ .++++++++||+|++
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~D~Ivs 137 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKI---EEVHLPVEKVDVIIS 137 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCT---TTSCCSCSCEEEEEE
T ss_pred hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeH---HHhcCCCCcEEEEEE
Confidence 35778999999998864332 22456999999996 775543 2335666676 677787889999998
Q ss_pred cc---hhhccCCHHHHHHHHHHcccCCcEEE
Q 023470 164 AV---SVQYLQQPEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 164 ~~---~l~~~~~~~~~l~~~~r~LkpgG~li 191 (282)
.. .+.|..++..+++++.++|||||.++
T Consensus 138 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 138 EWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred cCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 76 57777788889999999999999997
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-13 Score=122.55 Aligned_cols=103 Identities=14% Similarity=0.105 Sum_probs=75.4
Q ss_pred HHHHHHh-hCCCCCeEEEeCCcccchhhh---hcCCCeEEEEcCCHHHHHhCC-----------------CCCceEEeec
Q 023470 87 LTNLYRQ-MLRPGSEVLDLMSSWVSHLPQ---EVSYKRVVGHGLNAQELAKNP-----------------RLEYFIVKDL 145 (282)
Q Consensus 87 ~~~~~~~-~~~~~~~vLDiGcG~~~~~~~---~~~~~~v~giD~s~~~l~~~~-----------------~~~~~~~~d~ 145 (282)
+..++.. .+.++.+|||||||+|..... ..+..+|+|+|+|+.|++.++ ....+..+|+
T Consensus 162 i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~ 241 (438)
T 3uwp_A 162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 241 (438)
T ss_dssp HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence 3333433 356889999999999875433 235557999999998765443 2345677777
Q ss_pred ccccCCCCCC--CceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 146 NQDQKLEFDH--CSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 146 ~~~~~l~~~~--~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.++++.+ .++|+|+++..+ +.++....|.+++|+|||||+|++.
T Consensus 242 ---~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 242 ---LSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp ---TSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEES
T ss_pred ---cCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEe
Confidence 5666543 469999998776 4568888999999999999999875
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.6e-13 Score=117.63 Aligned_cols=133 Identities=10% Similarity=-0.046 Sum_probs=90.8
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCC---------CCCceEEeecccccCCCCCCCceeEEEec
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNP---------RLEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~---------~~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
+..+|||||||+|... +...+..+++++|+ +.+++.++ ....+...|+ . .+++. +||+|++.
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~-~~~p~-~~D~v~~~ 242 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSF---F-DPLPA-GAGGYVLS 242 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT---T-SCCCC-SCSEEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCC---C-CCCCC-CCcEEEEe
Confidence 3578999999988654 33447889999999 98886554 2345667776 3 34444 79999999
Q ss_pred chhhccCCH--HHHHHHHHHcccCCcEEEEEEcCchhHHHHHHhhhcCCCCcchhhHH-HHHH--hhCCCCchHHhhcCC
Q 023470 165 VSVQYLQQP--EKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVV-QYFQ--CVEGYTNPEIVRKLP 239 (282)
Q Consensus 165 ~~l~~~~~~--~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~gF~~~ei~~~~~ 239 (282)
+++||+++. ..++++++++|||||++++......... .. ...+ .++. ...-++..|+...+.
T Consensus 243 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~-----------~~--~~~d~~~~~~~~~~~~t~~e~~~ll~ 309 (332)
T 3i53_A 243 AVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEH-----------AG--TGMDLRMLTYFGGKERSLAELGELAA 309 (332)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC--------------CC--HHHHHHHHHHHSCCCCCHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCC-----------cc--HHHHHHHHhhCCCCCCCHHHHHHHHH
Confidence 999999876 7799999999999999998744221110 00 0000 0111 113466677888888
Q ss_pred CCccccccc
Q 023470 240 ADSAAAQED 248 (282)
Q Consensus 240 ~~g~~~~~~ 248 (282)
.+||.....
T Consensus 310 ~aGf~~~~~ 318 (332)
T 3i53_A 310 QAGLAVRAA 318 (332)
T ss_dssp HTTEEEEEE
T ss_pred HCCCEEEEE
Confidence 888866554
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=117.62 Aligned_cols=94 Identities=13% Similarity=0.087 Sum_probs=73.7
Q ss_pred CCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
..++.+|||||||+|... +...+..+++++|+ +.+++.++. ...+..+|+ .+.++++. |+|+
T Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~--D~v~ 261 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDI---YKESYPEA--DAVL 261 (359)
T ss_dssp CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCT---TTSCCCCC--SEEE
T ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCcc---ccCCCCCC--CEEE
Confidence 346789999999988643 33346789999999 988865542 245667777 45566543 9999
Q ss_pred ecchhhccCC--HHHHHHHHHHcccCCcEEEEEE
Q 023470 163 CAVSVQYLQQ--PEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 163 ~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~~ 194 (282)
+..++||+++ ...++++++++|||||++++..
T Consensus 262 ~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 262 FCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp EESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred EechhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9999999987 6789999999999999997764
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=116.20 Aligned_cols=95 Identities=16% Similarity=0.107 Sum_probs=74.0
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEe
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.++.+|||+|||+|... +...+..+++|+|+| .+++.++. ...+...|+ .+.+++++ ||+|++
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~-~D~v~~ 238 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSA---FEVDYGND-YDLVLL 238 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCT---TTSCCCSC-EEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEeccc---ccCCCCCC-CcEEEE
Confidence 56789999999988643 333467899999999 88876543 245666766 44555544 999999
Q ss_pred cchhhccCCH--HHHHHHHHHcccCCcEEEEEEc
Q 023470 164 AVSVQYLQQP--EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 164 ~~~l~~~~~~--~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.+++||+++. ..++++++++|||||++++...
T Consensus 239 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 272 (335)
T 2r3s_A 239 PNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDF 272 (335)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cchhccCCHHHHHHHHHHHHHhCCCCcEEEEEee
Confidence 9999999654 6799999999999999888654
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-12 Score=116.23 Aligned_cols=137 Identities=8% Similarity=-0.013 Sum_probs=91.9
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCC---------CCCceEEeecccccCCCCCCCceeEEEe
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNP---------RLEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~---------~~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.+..+|||||||+|... +...+..+++++|+ +.+++.++ ....+...|+ . .+++. .||+|++
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~---~-~~~p~-~~D~v~~ 274 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDF---F-ETIPD-GADVYLI 274 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT---T-TCCCS-SCSEEEE
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCC---C-CCCCC-CceEEEh
Confidence 45689999999988654 33447889999999 98886554 2345667776 3 34444 7999999
Q ss_pred cchhhccCCHH--HHHHHHHHcccCCcEEEEEEcCchhHHHHHHhhhcCCCCcchhhHHHHHHh--hCCCCchHHhhcCC
Q 023470 164 AVSVQYLQQPE--KVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQC--VEGYTNPEIVRKLP 239 (282)
Q Consensus 164 ~~~l~~~~~~~--~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~gF~~~ei~~~~~ 239 (282)
..++|+.++.. .++++++++|||||++++..............+. .. .++.. ..-++..|+...+.
T Consensus 275 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~---------d~-~~~~~~~g~~~t~~e~~~ll~ 344 (369)
T 3gwz_A 275 KHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFV---------DL-LLLVLVGGAERSESEFAALLE 344 (369)
T ss_dssp ESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHH---------HH-HHHHHHSCCCBCHHHHHHHHH
T ss_pred hhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHh---------hH-HHHhhcCCccCCHHHHHHHHH
Confidence 99999998776 6999999999999999886432100000000000 00 01111 12366778888888
Q ss_pred CCccccccc
Q 023470 240 ADSAAAQED 248 (282)
Q Consensus 240 ~~g~~~~~~ 248 (282)
.+||.....
T Consensus 345 ~aGf~~~~~ 353 (369)
T 3gwz_A 345 KSGLRVERS 353 (369)
T ss_dssp TTTEEEEEE
T ss_pred HCCCeEEEE
Confidence 888876654
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=106.86 Aligned_cols=104 Identities=16% Similarity=0.232 Sum_probs=72.5
Q ss_pred HHHHHHh--hCCCCCeEEEeCCcccch---hhhhcC--CCeEEEEcCCHHHHHhCCCCCceEEeecccccCCC-------
Q 023470 87 LTNLYRQ--MLRPGSEVLDLMSSWVSH---LPQEVS--YKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLE------- 152 (282)
Q Consensus 87 ~~~~~~~--~~~~~~~vLDiGcG~~~~---~~~~~~--~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~------- 152 (282)
+.++... .+.++.+|||+|||+|.. ++...+ ..+|+|+|+|+.+ ......+..+|+ .+.+
T Consensus 10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---~~~~v~~~~~d~---~~~~~~~~~~~ 83 (201)
T 2plw_A 10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---PIPNVYFIQGEI---GKDNMNNIKNI 83 (201)
T ss_dssp HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---CCTTCEEEECCT---TTTSSCCC---
T ss_pred HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---CCCCceEEEccc---cchhhhhhccc
Confidence 4444443 256788999999998864 333334 5899999999832 112345667776 3443
Q ss_pred ------------------CCCCceeEEEecchhhccC----CH-------HHHHHHHHHcccCCcEEEEEEcC
Q 023470 153 ------------------FDHCSFDAVVCAVSVQYLQ----QP-------EKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 153 ------------------~~~~s~D~v~~~~~l~~~~----~~-------~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+++++||+|++..++++.. +. ..++++++++|||||.+++.+..
T Consensus 84 ~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 84 NYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp --------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 4567999999998777642 22 23789999999999999987654
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.7e-13 Score=106.51 Aligned_cols=114 Identities=10% Similarity=0.071 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC-------CCceEEeecccc-cCCC
Q 023470 82 GFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQD-QKLE 152 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~~-~~l~ 152 (282)
...+.+...+...++++.+|||+|||+|....... .+.+|+|+|+|+.|++.++. ...+...|.... ..++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (171)
T 1ws6_A 26 RLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAK 105 (171)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhh
Confidence 34555555555555577899999999887543322 35569999999999876653 334555555210 0111
Q ss_pred CCCCceeEEEecchhhccCCHHHHHHHHH--HcccCCcEEEEEEcCc
Q 023470 153 FDHCSFDAVVCAVSVQYLQQPEKVFAEVF--RVLKPGGVFIVSFSNR 197 (282)
Q Consensus 153 ~~~~s~D~v~~~~~l~~~~~~~~~l~~~~--r~LkpgG~li~~~~~~ 197 (282)
..+++||+|++...++ .+.+.+++.+. ++|||||.++++++..
T Consensus 106 ~~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 106 AQGERFTVAFMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp HTTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred ccCCceEEEEECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 1234799999997765 56677777777 9999999999987754
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-13 Score=111.41 Aligned_cols=93 Identities=15% Similarity=0.099 Sum_probs=71.7
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
+.++.+|||+|||+|....... .+.+|+|+|+|+.+++.++. +..+...|. .....++++||+|++..
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~D~i~~~~ 151 (210)
T 3lbf_A 75 LTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDG---WQGWQARAPFDAIIVTA 151 (210)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG---GGCCGGGCCEEEEEESS
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCc---ccCCccCCCccEEEEcc
Confidence 4578899999999886433221 36899999999999876542 234566665 34444468899999999
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+++|+++ ++.++|||||++++.+++
T Consensus 152 ~~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 152 APPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp BCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred chhhhhH------HHHHhcccCcEEEEEEcC
Confidence 9999975 689999999999999876
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=107.31 Aligned_cols=95 Identities=13% Similarity=0.031 Sum_probs=70.0
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
+.++.+|||+|||+|....... .+.+|+|+|+|++|++.++. ...+..+|. .+......+||+|++.
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~---~~~~~~~~~~D~v~~~ 129 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA---PAALADLPLPEAVFIG 129 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCT---TGGGTTSCCCSEEEEC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCch---hhhcccCCCCCEEEEC
Confidence 4578899999999886432211 37899999999999876542 234556665 3321123579999988
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.++ +.+ +++++.++|||||+++++....
T Consensus 130 ~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~ 157 (204)
T 3njr_A 130 GGG----SQA-LYDRLWEWLAPGTRIVANAVTL 157 (204)
T ss_dssp SCC----CHH-HHHHHHHHSCTTCEEEEEECSH
T ss_pred Ccc----cHH-HHHHHHHhcCCCcEEEEEecCc
Confidence 754 566 9999999999999999987754
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=117.56 Aligned_cols=139 Identities=18% Similarity=0.117 Sum_probs=90.1
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEe
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.++.+|||||||+|... +...+..+++++|+ +.+++.++. ...+...|+. + +++. .||+|++
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~-~~~~-~~D~v~~ 254 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFF---K-PLPV-TADVVLL 254 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT---S-CCSC-CEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCC---C-cCCC-CCCEEEE
Confidence 46789999999988653 33346789999999 998875542 3456666662 2 3333 3999999
Q ss_pred cchhhccCCHH--HHHHHHHHcccCCcEEEEEEc--C-chhHHHHHHhhhcCCCCcchhhHHHHHHhhCCCCchHHhhcC
Q 023470 164 AVSVQYLQQPE--KVFAEVFRVLKPGGVFIVSFS--N-RMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKL 238 (282)
Q Consensus 164 ~~~l~~~~~~~--~~l~~~~r~LkpgG~li~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~ei~~~~ 238 (282)
..++||+++.. .++++++++|||||++++... . +.........+.+ ... .......-++..++...+
T Consensus 255 ~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~ll 326 (374)
T 1qzz_A 255 SFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLD------LRM--LTFMGGRVRTRDEVVDLA 326 (374)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHH------HHH--HHHHSCCCCCHHHHHHHH
T ss_pred eccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcc------hHH--HHhCCCcCCCHHHHHHHH
Confidence 99999998775 799999999999999988654 1 1100000000000 000 000111336778888888
Q ss_pred CCCccccccc
Q 023470 239 PADSAAAQED 248 (282)
Q Consensus 239 ~~~g~~~~~~ 248 (282)
..+||.....
T Consensus 327 ~~aGf~~~~~ 336 (374)
T 1qzz_A 327 GSAGLALASE 336 (374)
T ss_dssp HTTTEEEEEE
T ss_pred HHCCCceEEE
Confidence 8888866553
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=6.9e-13 Score=111.26 Aligned_cols=97 Identities=10% Similarity=0.063 Sum_probs=65.9
Q ss_pred CCCCCeEEEeCCcccchhhh---hcCCCeEEEEcCC-HHHHHhC---CCC--------CceEEeecccccCCCCC-CCce
Q 023470 95 LRPGSEVLDLMSSWVSHLPQ---EVSYKRVVGHGLN-AQELAKN---PRL--------EYFIVKDLNQDQKLEFD-HCSF 158 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~---~~~~~~v~giD~s-~~~l~~~---~~~--------~~~~~~d~~~~~~l~~~-~~s~ 158 (282)
..++.+|||||||+|..... ..++.+|+|+|+| +.|++.+ +.. ..+..+|. +.++.. .+.+
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~---~~l~~~~~d~v 98 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAA---ESLPFELKNIA 98 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBT---TBCCGGGTTCE
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCH---HHhhhhccCeE
Confidence 45778999999999875433 2467899999999 6675544 322 24455555 555421 2556
Q ss_pred eEEEecchhhc-----cCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 159 DAVVCAVSVQY-----LQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 159 D~v~~~~~l~~-----~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
|.|.+++...+ ..+...++++++|+|||||++++.+
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 99 DSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp EEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 77766653222 2345679999999999999999843
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-13 Score=113.49 Aligned_cols=92 Identities=10% Similarity=0.026 Sum_probs=70.6
Q ss_pred CCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCC---CCceeEE
Q 023470 96 RPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFD---HCSFDAV 161 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~---~~s~D~v 161 (282)
.++.+|||+|||+|.. ++...++.+|+|+|+|++|++.++. ...+..+|+ .++++. +++||+|
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~fD~V 145 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRA---ETFGQRKDVRESYDIV 145 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCH---HHHTTCTTTTTCEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccH---HHhcccccccCCccEE
Confidence 3678999999998853 3333477899999999999865542 234556665 455543 5789999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
+|.. +.+...+++++.++|||||.+++..
T Consensus 146 ~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 146 TARA----VARLSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp EEEC----CSCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEec----cCCHHHHHHHHHHhcCCCCEEEEEe
Confidence 9976 4678999999999999999998863
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=117.30 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=72.6
Q ss_pred CCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++.+|||||||+|...... .+..+|+|+|+| .|++.++. ...+..+++ +++++++++||+|++.
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~Iis~ 140 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKV---EEVELPVEKVDIIISE 140 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCT---TTCCCSSSCEEEEEEC
T ss_pred CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcH---HHccCCCCceEEEEEc
Confidence 47789999999988643322 255699999999 47754432 145677777 7778888999999997
Q ss_pred ch---hhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VS---VQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~---l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.+ +++..+++.+++++.|+|||||.++..
T Consensus 141 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 141 WMGYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp CCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 54 555579999999999999999998743
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.36 E-value=6.5e-12 Score=105.57 Aligned_cols=99 Identities=12% Similarity=0.132 Sum_probs=67.0
Q ss_pred CCCCCeEEEeCCcccchh---hhhc-CCCeEEEEcCCHHHH----HhC--CCCCceEEeecccccCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEV-SYKRVVGHGLNAQEL----AKN--PRLEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~-~~~~v~giD~s~~~l----~~~--~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
+.++.+|||+|||+|... +... +..+|+|+|+|+.|+ +.+ +.+..+..+|...........++||+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 558899999999987643 3332 567999999999875 222 234456677763211111224689999998
Q ss_pred chhhccCCHHHH-HHHHHHcccCCcEEEEEEcC
Q 023470 165 VSVQYLQQPEKV-FAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 165 ~~l~~~~~~~~~-l~~~~r~LkpgG~li~~~~~ 196 (282)
... ++.... +..+.++|||||+|++++..
T Consensus 154 ~a~---~~~~~il~~~~~~~LkpGG~lvisik~ 183 (232)
T 3id6_C 154 IAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKA 183 (232)
T ss_dssp CCC---TTHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCC---hhHHHHHHHHHHHhCCCCeEEEEEEcc
Confidence 653 455554 45666699999999998643
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=7.6e-12 Score=112.50 Aligned_cols=92 Identities=12% Similarity=0.117 Sum_probs=73.6
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC--CceEEeecccccCCCCCCCceeEEEecchhhcc
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL--EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~--~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~ 170 (282)
.+..+|||||||+|... +...+..+++++|+ +.+++.++.. ..+..+|+ .+ +++++ |+|++.+++||+
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~---~~-~~p~~--D~v~~~~vlh~~ 274 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAFSGVEHLGGDM---FD-GVPKG--DAIFIKWICHDW 274 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCT---TT-CCCCC--SEEEEESCGGGB
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhcCCCEEEecCC---CC-CCCCC--CEEEEechhhcC
Confidence 35679999999988654 34457889999999 9999887754 45667776 33 55544 999999999999
Q ss_pred CCHH--HHHHHHHHcccCCcEEEEEE
Q 023470 171 QQPE--KVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 171 ~~~~--~~l~~~~r~LkpgG~li~~~ 194 (282)
++.+ .+|++++++|||||++++..
T Consensus 275 ~~~~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 275 SDEHCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp CHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 8664 68999999999999998864
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-12 Score=115.54 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=74.6
Q ss_pred CCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC--CceEEeecccccCCCCCCCceeEEEecchhhc
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL--EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~--~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~ 169 (282)
+.+..+|||||||+|... +...+..+++++|+ +.+++.++.. ..+..+|+ .+ ++++ ||+|++.+++||
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~---~~-~~~~--~D~v~~~~~lh~ 279 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDM---FA-SVPQ--GDAMILKAVCHN 279 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCT---TT-CCCC--EEEEEEESSGGG
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhcCCCEEEeCCc---cc-CCCC--CCEEEEeccccc
Confidence 345789999999988654 33346789999999 9999887754 35566666 34 5544 999999999999
Q ss_pred cCCHH--HHHHHHHHcccCCcEEEEE
Q 023470 170 LQQPE--KVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 170 ~~~~~--~~l~~~~r~LkpgG~li~~ 193 (282)
+++.+ .++++++++|||||++++.
T Consensus 280 ~~d~~~~~~l~~~~~~L~pgG~l~i~ 305 (372)
T 1fp1_D 280 WSDEKCIEFLSNCHKALSPNGKVIIV 305 (372)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99888 8999999999999999886
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-12 Score=112.15 Aligned_cols=106 Identities=13% Similarity=0.046 Sum_probs=71.3
Q ss_pred HHHHHHHhhC-C-CCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhC-CCCCceEEeecccccCCC---CCCCc
Q 023470 86 TLTNLYRQML-R-PGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKN-PRLEYFIVKDLNQDQKLE---FDHCS 157 (282)
Q Consensus 86 ~~~~~~~~~~-~-~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~-~~~~~~~~~d~~~~~~l~---~~~~s 157 (282)
.+...+.... . ++.+|||+|||+|.+.... .+..+|+|+|+|+.|++.+ +...............++ ++..+
T Consensus 72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~ 151 (291)
T 3hp7_A 72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL 151 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence 4555555442 2 4679999999998755332 2456999999999998652 222222221111102221 34456
Q ss_pred eeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
||+|++..+++++ ..+|.+++|+|||||.+++.+
T Consensus 152 fD~v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~lv 185 (291)
T 3hp7_A 152 PSFASIDVSFISL---NLILPALAKILVDGGQVVALV 185 (291)
T ss_dssp CSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEE
T ss_pred CCEEEEEeeHhhH---HHHHHHHHHHcCcCCEEEEEE
Confidence 9999998887755 889999999999999998864
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-11 Score=110.70 Aligned_cols=92 Identities=11% Similarity=0.161 Sum_probs=73.7
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC--CceEEeecccccCCCCCCCceeEEEecchhhcc
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL--EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~--~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~ 170 (282)
.+..+|||||||+|... +...+..+++++|+ +.+++.++.. ..+..+|+ .+ +++++ |+|++.+++||+
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~---~~-~~p~~--D~v~~~~vlh~~ 272 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQFPGVTHVGGDM---FK-EVPSG--DTILMKWILHDW 272 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCT---TT-CCCCC--SEEEEESCGGGS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhcCCeEEEeCCc---CC-CCCCC--CEEEehHHhccC
Confidence 45689999999988654 34447889999999 8899887754 46677776 44 56554 999999999999
Q ss_pred CCH--HHHHHHHHHcccCCcEEEEEE
Q 023470 171 QQP--EKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 171 ~~~--~~~l~~~~r~LkpgG~li~~~ 194 (282)
++. ..+|++++++|||||++++..
T Consensus 273 ~d~~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 273 SDQHCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp CHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 755 469999999999999998863
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-12 Score=107.52 Aligned_cols=110 Identities=18% Similarity=0.098 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhhh--hcCCCeEEEEcCCHHHHHhCCC----------CCceEEeecccccC
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQ--EVSYKRVVGHGLNAQELAKNPR----------LEYFIVKDLNQDQK 150 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~--~~~~~~v~giD~s~~~l~~~~~----------~~~~~~~d~~~~~~ 150 (282)
..+.+...+... .++.+|||+|||+|..... .....+|+|+|+|+.|++.++. ...+..+|+ .+
T Consensus 40 ~~~~l~~~l~~~-~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~---~~ 115 (201)
T 2ift_A 40 VKETLFNWLMPY-IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSS---LD 115 (201)
T ss_dssp HHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCH---HH
T ss_pred HHHHHHHHHHHh-cCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCH---HH
Confidence 333444444332 2568999999999875432 2244699999999999876542 234455554 22
Q ss_pred C-C-CCCCc-eeEEEecchhhccCCHHHHHHHH--HHcccCCcEEEEEEcCc
Q 023470 151 L-E-FDHCS-FDAVVCAVSVQYLQQPEKVFAEV--FRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 151 l-~-~~~~s-~D~v~~~~~l~~~~~~~~~l~~~--~r~LkpgG~li~~~~~~ 197 (282)
+ + +++++ ||+|++...++ ..+...+++++ .++|||||.++++....
T Consensus 116 ~~~~~~~~~~fD~I~~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 116 FLKQPQNQPHFDVVFLDPPFH-FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp HTTSCCSSCCEEEEEECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred HHHhhccCCCCCEEEECCCCC-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 2 2 23678 99999987754 56777899999 77899999999987654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.3e-12 Score=102.54 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=70.9
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCC-CceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDH-CSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~-~s~D~v~~ 163 (282)
+.++.+|||+|||+|....... ...+|+|+|+|+.+++.++. ...+...|. .. ++++ ++||+|++
T Consensus 31 ~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~-~~~~~~~~D~v~~ 106 (192)
T 1l3i_A 31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDA---PE-ALCKIPDIDIAVV 106 (192)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCH---HH-HHTTSCCEEEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCH---HH-hcccCCCCCEEEE
Confidence 4578899999999886543322 33899999999998865542 234445554 22 2222 58999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
..++++ ...+++++.++|||||.+++..++.
T Consensus 107 ~~~~~~---~~~~l~~~~~~l~~gG~l~~~~~~~ 137 (192)
T 1l3i_A 107 GGSGGE---LQEILRIIKDKLKPGGRIIVTAILL 137 (192)
T ss_dssp SCCTTC---HHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred CCchHH---HHHHHHHHHHhcCCCcEEEEEecCc
Confidence 988765 4889999999999999999987654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.4e-12 Score=111.72 Aligned_cols=93 Identities=14% Similarity=0.097 Sum_probs=70.1
Q ss_pred CCCCeEEEeCCcccchhhh--hcCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSHLPQ--EVSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~--~~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++.+|||||||+|..... ..+..+|+|+|+| .|++.++. ...+..+|+ .++++++++||+|++.
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~D~Ivs~ 112 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKL---EDVHLPFPKVDIIISE 112 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCT---TTSCCSSSCEEEEEEC
T ss_pred cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECch---hhccCCCCcccEEEEe
Confidence 3678999999998864322 2345699999999 57754431 234666666 6677777899999998
Q ss_pred c---hhhccCCHHHHHHHHHHcccCCcEEEE
Q 023470 165 V---SVQYLQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 165 ~---~l~~~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
. .+.+..+++.++.++.++|||||.++.
T Consensus 113 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 113 WMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred CchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 4 455667788999999999999999973
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-12 Score=108.36 Aligned_cols=94 Identities=19% Similarity=0.194 Sum_probs=70.6
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCCCCceeEEEecchh
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
+.++.+|||+|||+|....... .+.+|+|+|+|+.+++.++. ...+...|. ......+++||+|++..++
T Consensus 68 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~v~~~~~~ 144 (231)
T 1vbf_A 68 LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDG---TLGYEEEKPYDRVVVWATA 144 (231)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCG---GGCCGGGCCEEEEEESSBB
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCc---ccccccCCCccEEEECCcH
Confidence 4577899999999886543322 23799999999999876542 234556665 3322235789999999999
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+|+. .++.++|||||++++.++..
T Consensus 145 ~~~~------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 145 PTLL------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp SSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred HHHH------HHHHHHcCCCcEEEEEEcCC
Confidence 9986 47999999999999997754
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.5e-12 Score=111.63 Aligned_cols=94 Identities=15% Similarity=0.055 Sum_probs=70.6
Q ss_pred CCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCC-------CCCceEEeecccccCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNP-------RLEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~-------~~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
+.++.+|||||||+|... +...+..+++++|++ .++...+ ....+..+|+ . .+++ +||+|++.
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~~~~~~~~~~~~v~~~~~d~---~-~~~p--~~D~v~~~ 254 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVARHRLDAPDVAGRWKVVEGDF---L-REVP--HADVHVLK 254 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHTTCCCCCGGGTTSEEEEECCT---T-TCCC--CCSEEEEE
T ss_pred ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhhcccccccCCCCCeEEEecCC---C-CCCC--CCcEEEEe
Confidence 346779999999988654 344477899999995 4444322 1235566666 2 2344 89999999
Q ss_pred chhhccCCH--HHHHHHHHHcccCCcEEEEEEc
Q 023470 165 VSVQYLQQP--EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ~~l~~~~~~--~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.++||+++. ..++++++++|||||++++...
T Consensus 255 ~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 255 RILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred hhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 999999987 5899999999999999988643
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-12 Score=107.45 Aligned_cols=91 Identities=18% Similarity=0.153 Sum_probs=67.9
Q ss_pred CCCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhC----CC--CCceEEeecccccC----CCCCCCceeEE
Q 023470 95 LRPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKN----PR--LEYFIVKDLNQDQK----LEFDHCSFDAV 161 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~----~~--~~~~~~~d~~~~~~----l~~~~~s~D~v 161 (282)
+.++.+|||+|||+|.. ++...+..+|+|+|+|+.|++.+ +. +..+..+|. .. +++. ++||+|
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~---~~~~~~~~~~-~~~D~v 147 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA---NKPQEYANIV-EKVDVI 147 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT---TCGGGGTTTS-CCEEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCC---CCcccccccC-ccEEEE
Confidence 34678999999998864 33333557999999999988543 22 234556666 44 5555 789999
Q ss_pred EecchhhccCCH---HHHHHHHHHcccCCcEEEEEE
Q 023470 162 VCAVSVQYLQQP---EKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 162 ~~~~~l~~~~~~---~~~l~~~~r~LkpgG~li~~~ 194 (282)
+ ++++++ ..+++++.++|||||.+++.+
T Consensus 148 ~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 178 (230)
T 1fbn_A 148 Y-----EDVAQPNQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp E-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred E-----EecCChhHHHHHHHHHHHhCCCCcEEEEEE
Confidence 9 455666 778999999999999999874
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.1e-12 Score=112.84 Aligned_cols=93 Identities=8% Similarity=0.048 Sum_probs=74.6
Q ss_pred CCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC--CceEEeecccccCCCCCCCceeEEEecchhhc
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL--EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~--~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~ 169 (282)
+.+..+|||||||+|... +...++.+++++|+ +.|++.++.. ..+..+|+ .+ +++ .||+|++.+++||
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~---~~-~~p--~~D~v~~~~~lh~ 258 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDM---FT-SIP--NADAVLLKYILHN 258 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCT---TT-CCC--CCSEEEEESCGGG
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccCCCcEEEeccc---cC-CCC--CccEEEeehhhcc
Confidence 346689999999988654 33347789999999 9999888754 34556665 33 444 3999999999999
Q ss_pred cCCHH--HHHHHHHHcccC---CcEEEEEE
Q 023470 170 LQQPE--KVFAEVFRVLKP---GGVFIVSF 194 (282)
Q Consensus 170 ~~~~~--~~l~~~~r~Lkp---gG~li~~~ 194 (282)
+++.+ .++++++++||| ||++++..
T Consensus 259 ~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 259 WTDKDCLRILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp SCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 99887 899999999999 99998874
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.8e-12 Score=109.21 Aligned_cols=106 Identities=13% Similarity=0.130 Sum_probs=73.9
Q ss_pred HHHHHHHhhC-CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCC
Q 023470 86 TLTNLYRQML-RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEF 153 (282)
Q Consensus 86 ~~~~~~~~~~-~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~ 153 (282)
.+...+...+ .++.+|||+|||+|... +...+..+|+|+|+|+.+++.++.+ ..+..+|.. . ++
T Consensus 97 ~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~---~-~~ 172 (276)
T 2b3t_A 97 CLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWF---S-AL 172 (276)
T ss_dssp HHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTT---G-GG
T ss_pred HHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchh---h-hc
Confidence 3444444444 46779999999988643 3344678999999999998765422 345555552 2 23
Q ss_pred CCCceeEEEec-------------chhhccC------------CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 154 DHCSFDAVVCA-------------VSVQYLQ------------QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 154 ~~~s~D~v~~~-------------~~l~~~~------------~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
++++||+|+++ .+++|.+ +...+++++.++|||||.++++.+
T Consensus 173 ~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~ 239 (276)
T 2b3t_A 173 AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 239 (276)
T ss_dssp TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 36789999998 3444433 346789999999999999999854
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.8e-12 Score=100.67 Aligned_cols=94 Identities=11% Similarity=-0.005 Sum_probs=72.3
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
..++.+|||+|||+|....... +..+++|+|+|+.+++.++. ...+...|+ .+ ++++++||+|++..
T Consensus 33 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~---~~-~~~~~~~D~i~~~~ 108 (183)
T 2yxd_A 33 LNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRA---ED-VLDKLEFNKAFIGG 108 (183)
T ss_dssp CCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCH---HH-HGGGCCCSEEEECS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCc---cc-cccCCCCcEEEECC
Confidence 4467899999999886543322 77899999999999876542 234555665 33 45567899999998
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
+ .+...+++++.++ |||.+++..++..
T Consensus 109 ~----~~~~~~l~~~~~~--~gG~l~~~~~~~~ 135 (183)
T 2yxd_A 109 T----KNIEKIIEILDKK--KINHIVANTIVLE 135 (183)
T ss_dssp C----SCHHHHHHHHHHT--TCCEEEEEESCHH
T ss_pred c----ccHHHHHHHHhhC--CCCEEEEEecccc
Confidence 8 6778999999999 9999999987653
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.30 E-value=4e-13 Score=110.77 Aligned_cols=96 Identities=17% Similarity=0.113 Sum_probs=57.8
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCCC-------ceEEeecccccCCCCCC-----CceeE
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRLE-------YFIVKDLNQDQKLEFDH-----CSFDA 160 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~~-------~~~~~d~~~~~~l~~~~-----~s~D~ 160 (282)
.++.+|||+|||+|... +...+..+++|+|+|+.|++.++.+. .+..+|+ .+ ++++ ++||+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~---~~-~~~~~~~~~~~fD~ 104 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADG---IE-WLIERAERGRPWHA 104 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHH---HH-HHHHHHHTTCCBSE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcch---Hh-hhhhhhhccCcccE
Confidence 57789999999988653 33335679999999999998876542 2334444 22 3444 89999
Q ss_pred EEecchh------hccCCH--------------------HHHHHHHHHcccCCcE-EEEEEc
Q 023470 161 VVCAVSV------QYLQQP--------------------EKVFAEVFRVLKPGGV-FIVSFS 195 (282)
Q Consensus 161 v~~~~~l------~~~~~~--------------------~~~l~~~~r~LkpgG~-li~~~~ 195 (282)
|+++... +++... ..+++++.++|||||+ +++.++
T Consensus 105 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 105 IVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp EEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred EEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 9996433 222211 6788999999999999 666654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.6e-12 Score=113.69 Aligned_cols=93 Identities=18% Similarity=0.238 Sum_probs=71.6
Q ss_pred CCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCC-CCCCceeEEEec
Q 023470 98 GSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLE-FDHCSFDAVVCA 164 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~-~~~~s~D~v~~~ 164 (282)
+.+|||||||+|... +...+..+++++|+ +.+++.++. ...+..+|+ ...+ +..+.||+|++.
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~D~v~~~ 255 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNL---LDARNFEGGAADVVMLN 255 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCT---TCGGGGTTCCEEEEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCc---ccCcccCCCCccEEEEe
Confidence 689999999988654 34447789999999 777754432 235666776 3333 134669999999
Q ss_pred chhhccCCH--HHHHHHHHHcccCCcEEEEEE
Q 023470 165 VSVQYLQQP--EKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 165 ~~l~~~~~~--~~~l~~~~r~LkpgG~li~~~ 194 (282)
.++||+++. ..++++++++|||||++++..
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 256 DCLHYFDAREAREVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 999999865 779999999999999998864
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.29 E-value=5.2e-12 Score=108.96 Aligned_cols=149 Identities=18% Similarity=0.146 Sum_probs=95.7
Q ss_pred CCCCCeEEEeCCcccchh---hhh-cCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEE
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQE-VSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~-~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
+.++.+|||+|||+|... +.. .++.+|+|+|+|+.+++.++. +..+..+|+ .+ ++++++||+|
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~---~~-~~~~~~fD~V 183 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI---AD-FISDQMYDAV 183 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCT---TT-CCCSCCEEEE
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECch---hc-cCcCCCccEE
Confidence 456789999999987643 332 257899999999998865432 234455555 33 5566889999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHHHHHHhhhcCCCCcchhhHHHHHHhhCCCCchHHhhcCCCC
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPAD 241 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~ei~~~~~~~ 241 (282)
++ |++++..+++++.++|||||++++.++....... +...+. ..||...++.+.+...
T Consensus 184 i~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----------------~~~~l~-~~Gf~~~~~~~~~~~~ 241 (275)
T 1yb2_A 184 IA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEK----------------TVLSLS-ASGMHHLETVELMKRR 241 (275)
T ss_dssp EE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHH----------------HHHHSG-GGTEEEEEEEEEEECC
T ss_pred EE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHH----------------HHHHHH-HCCCeEEEEEEEecce
Confidence 98 6778889999999999999999999875422111 111122 2577777666544442
Q ss_pred ccccccccCchHHHHHHhccCCCCCCeEEEEEeecC
Q 023470 242 SAAAQEDKSPISWLMRLLGFLSGSDPFYAVIAYKNF 277 (282)
Q Consensus 242 g~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~k~~ 277 (282)
.-......+|..+ . ...+.|++.++|..
T Consensus 242 ~~~~~~~~rp~~~------~--~~~~~~li~ark~~ 269 (275)
T 1yb2_A 242 ILVREGATRPASD------D--LTHTAFITFAIKKS 269 (275)
T ss_dssp CCCCTTCCCCGGG------G--SCEEEEEEEEEECC
T ss_pred eEecCCccccccc------c--CCCcEEEEEEEehh
Confidence 1111222233222 1 23567888887753
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.1e-12 Score=114.59 Aligned_cols=105 Identities=17% Similarity=0.126 Sum_probs=75.4
Q ss_pred HHHHHHHHHhh--CCCCCeEEEeCCcccchhhh--hcCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccC
Q 023470 84 ISTLTNLYRQM--LRPGSEVLDLMSSWVSHLPQ--EVSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQK 150 (282)
Q Consensus 84 ~~~~~~~~~~~--~~~~~~vLDiGcG~~~~~~~--~~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~ 150 (282)
...+.+.+... +.++.+|||||||+|..... ..+..+|+|+|+| .|++.++. ...+..+|+ ++
T Consensus 48 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~---~~ 123 (376)
T 3r0q_C 48 MDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSV---ED 123 (376)
T ss_dssp HHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCG---GG
T ss_pred HHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECch---hh
Confidence 33444444433 34678999999998864332 2244599999999 88765432 135667777 66
Q ss_pred CCCCCCceeEEEecchhhcc---CCHHHHHHHHHHcccCCcEEEEE
Q 023470 151 LEFDHCSFDAVVCAVSVQYL---QQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 151 l~~~~~s~D~v~~~~~l~~~---~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
++++ ++||+|++..+.+++ .+++.+++++.++|||||.++++
T Consensus 124 ~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 124 ISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp CCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred cCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 6665 889999997654444 57888999999999999999764
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.2e-12 Score=103.08 Aligned_cols=94 Identities=22% Similarity=0.243 Sum_probs=69.8
Q ss_pred CCCCCeEEEeCCcccchhhh---hc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHLPQ---EV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~---~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
+.++.+|||+|||+|..... .. +..+|+|+|+|+.+++.++. ...+...|.. ..++ .+++||+|+
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~--~~~~-~~~~fD~v~ 151 (215)
T 2yxe_A 75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGT--LGYE-PLAPYDRIY 151 (215)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGG--GCCG-GGCCEEEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcc--cCCC-CCCCeeEEE
Confidence 45788999999998764332 22 33799999999999876542 2344555542 2222 257899999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+..+++|+. +++.++|||||++++.++..
T Consensus 152 ~~~~~~~~~------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 152 TTAAGPKIP------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp ESSBBSSCC------HHHHHTEEEEEEEEEEESSS
T ss_pred ECCchHHHH------HHHHHHcCCCcEEEEEECCC
Confidence 999999986 48999999999999998754
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-12 Score=104.06 Aligned_cols=101 Identities=15% Similarity=0.065 Sum_probs=72.4
Q ss_pred CCCCeEEEeCCcccchhhh--hcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccc-cCCCCCCCceeEEEe
Q 023470 96 RPGSEVLDLMSSWVSHLPQ--EVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQD-QKLEFDHCSFDAVVC 163 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~--~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~-~~l~~~~~s~D~v~~ 163 (282)
.++.+|||+|||+|..... ..+..+|+|+|+|+.|++.++.+ ..+..+|.... ..++..+++||+|++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 122 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 122 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence 3678999999998875432 23457999999999998765422 34556665210 112223678999999
Q ss_pred cchhhccCCHHHHHHHH--HHcccCCcEEEEEEcCc
Q 023470 164 AVSVQYLQQPEKVFAEV--FRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~--~r~LkpgG~li~~~~~~ 197 (282)
...++ ..+....++.+ .++|||||.+++..+..
T Consensus 123 ~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 123 DPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp CCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 87744 45677888888 99999999999987754
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=99.78 Aligned_cols=98 Identities=20% Similarity=0.200 Sum_probs=66.7
Q ss_pred hCCCCCeEEEeCCcccchh---hhhcCC---------CeEEEEcCCHHHHHhCCCCCceE-EeecccccCCC--------
Q 023470 94 MLRPGSEVLDLMSSWVSHL---PQEVSY---------KRVVGHGLNAQELAKNPRLEYFI-VKDLNQDQKLE-------- 152 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~---~~~~~~---------~~v~giD~s~~~l~~~~~~~~~~-~~d~~~~~~l~-------- 152 (282)
.+.++.+|||+|||+|... +...+. .+|+|+|+|+.+ ......+. ..|+. ..+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---~~~~~~~~~~~d~~---~~~~~~~~~~~ 92 (196)
T 2nyu_A 19 ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---PLEGATFLCPADVT---DPRTSQRILEV 92 (196)
T ss_dssp CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---CCTTCEEECSCCTT---SHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---cCCCCeEEEeccCC---CHHHHHHHHHh
Confidence 3567899999999987643 333333 799999999842 11223445 55542 221
Q ss_pred CCCCceeEEEecchhhc----cCCH-------HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 153 FDHCSFDAVVCAVSVQY----LQQP-------EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 153 ~~~~s~D~v~~~~~l~~----~~~~-------~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+++++||+|+|..++++ ..+. ..+++++.++|||||.+++.+...
T Consensus 93 ~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (196)
T 2nyu_A 93 LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG 148 (196)
T ss_dssp SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 34568999999765443 2333 478999999999999999986543
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-13 Score=117.14 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=73.2
Q ss_pred CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEecch
Q 023470 97 PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
++.+|||+|||+|....... .+.+|+|+|+|+.|++.++. ...+..+|+ .+++ ++++||+|+++..
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~-~~~~~D~v~~~~~ 153 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDF---LLLA-SFLKADVVFLSPP 153 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH---HHHG-GGCCCSEEEECCC
T ss_pred CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECCh---HHhc-ccCCCCEEEECCC
Confidence 67899999999886543322 46899999999999876542 235666666 4444 4678999999999
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
++|..+....+.+++++|||||.+++.
T Consensus 154 ~~~~~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 154 WGGPDYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp CSSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred cCCcchhhhHHHHHHhhcCCcceeHHH
Confidence 999988777888999999999997655
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-12 Score=107.82 Aligned_cols=93 Identities=14% Similarity=0.005 Sum_probs=70.3
Q ss_pred CCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCC---CCCceeEE
Q 023470 96 RPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEF---DHCSFDAV 161 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~---~~~s~D~v 161 (282)
.++.+|||||||+|.. ++...+..+|+|+|+|+++++.++. +..+..+++ ++++. .+++||+|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~---~~~~~~~~~~~~fD~I 155 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRA---EVLAREAGHREAYARA 155 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCH---HHHTTSTTTTTCEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcH---HHhhcccccCCCceEE
Confidence 3578999999998864 3444578899999999999876542 234556665 44443 24789999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+|.. +.+...+++.+.++|||||++++...
T Consensus 156 ~s~a----~~~~~~ll~~~~~~LkpgG~l~~~~g 185 (249)
T 3g89_A 156 VARA----VAPLCVLSELLLPFLEVGGAAVAMKG 185 (249)
T ss_dssp EEES----SCCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred EECC----cCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9964 45778999999999999999987643
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.7e-12 Score=108.76 Aligned_cols=102 Identities=19% Similarity=0.214 Sum_probs=73.6
Q ss_pred HHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCce
Q 023470 87 LTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSF 158 (282)
Q Consensus 87 ~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~ 158 (282)
..+.+...+.++.+|||+|||+|....... .+.+|+|+|+|+.+++.++.+ ..+...+.. . ++++++|
T Consensus 110 ~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~---~-~~~~~~f 185 (254)
T 2nxc_A 110 ALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLE---A-ALPFGPF 185 (254)
T ss_dssp HHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHH---H-HGGGCCE
T ss_pred HHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChh---h-cCcCCCC
Confidence 444555557788999999999886432221 344999999999988665432 344455542 2 1346789
Q ss_pred eEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 159 DAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 159 D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|+|+++...+++ ..++.++.++|||||+++++..
T Consensus 186 D~Vv~n~~~~~~---~~~l~~~~~~LkpgG~lils~~ 219 (254)
T 2nxc_A 186 DLLVANLYAELH---AALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp EEEEEECCHHHH---HHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEEEECCcHHHH---HHHHHHHHHHcCCCCEEEEEee
Confidence 999998766654 7899999999999999999743
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.27 E-value=9.7e-12 Score=105.71 Aligned_cols=95 Identities=23% Similarity=0.278 Sum_probs=73.7
Q ss_pred CCCCCeEEEeCCcccchh---hhh-cCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEE
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQE-VSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~-~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
+.++.+|||+|||.|... +.. .+..+|+++|+|+.+++.++. ...+...|+ .+.++++++||+|
T Consensus 94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~---~~~~~~~~~~D~v 170 (258)
T 2pwy_A 94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKL---EEAELEEAAYDGV 170 (258)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCG---GGCCCCTTCEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECch---hhcCCCCCCcCEE
Confidence 457889999999987643 333 247899999999998865432 234556666 4556777899999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
++ +.+++..+++++.++|||||.+++..+..
T Consensus 171 ~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 201 (258)
T 2pwy_A 171 AL-----DLMEPWKVLEKAALALKPDRFLVAYLPNI 201 (258)
T ss_dssp EE-----ESSCGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred EE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 98 56788899999999999999999988754
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.27 E-value=5e-12 Score=103.98 Aligned_cols=91 Identities=9% Similarity=0.008 Sum_probs=68.9
Q ss_pred CCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEEecc
Q 023470 97 PGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
++.+|||+|||+|.. ++...+..+++|+|+|+.+++.++. ...+...|+ ..++ ++++||+|++..
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~-~~~~~D~i~~~~ 140 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRV---EEFP-SEPPFDGVISRA 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCT---TTSC-CCSCEEEEECSC
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecch---hhCC-ccCCcCEEEEec
Confidence 478999999998864 3333467899999999999865542 134555665 4444 457899999854
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+.+...+++++.++|||||.+++...
T Consensus 141 ----~~~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 141 ----FASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp ----SSSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred ----cCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 35678999999999999999998843
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-12 Score=104.11 Aligned_cols=98 Identities=12% Similarity=0.041 Sum_probs=69.1
Q ss_pred CCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccC-CCCCCCceeEEEe
Q 023470 96 RPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQK-LEFDHCSFDAVVC 163 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~-l~~~~~s~D~v~~ 163 (282)
.++.+|||+|||+|...... .+..+|+|+|+|+.|++.++.+ ..+...|+ .+ ++..+++||+|++
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~fD~i~~ 106 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEA---ERAIDCLTGRFDLVFL 106 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCH---HHHHHHBCSCEEEEEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcH---HHhHHhhcCCCCEEEE
Confidence 46789999999988754322 2457999999999998765421 23445554 22 3333467999999
Q ss_pred cchhhccCCHHHHHHHHH--HcccCCcEEEEEEcCc
Q 023470 164 AVSVQYLQQPEKVFAEVF--RVLKPGGVFIVSFSNR 197 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~--r~LkpgG~li~~~~~~ 197 (282)
...++. ...+..++.+. ++|||||.++++++..
T Consensus 107 ~~~~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 107 DPPYAK-ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp CCSSHH-HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCCCc-chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 866532 34566777776 9999999999987654
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.9e-12 Score=112.10 Aligned_cols=93 Identities=22% Similarity=0.192 Sum_probs=70.1
Q ss_pred CCCCCeEEEeCCcccchhh---hhcC-CCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHLP---QEVS-YKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~---~~~~-~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
+.++.+|||||||+|.... .... ..+|+|+|+|+++++.++. ...+...|. ......+++||+|+
T Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~---~~~~~~~~~fD~Iv 149 (317)
T 1dl5_A 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDG---YYGVPEFSPYDVIF 149 (317)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG---GGCCGGGCCEEEEE
T ss_pred CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECCh---hhccccCCCeEEEE
Confidence 4578899999999886433 2223 4679999999999865542 234556665 44333457899999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+..+++|+. +++.++|||||++++.+..
T Consensus 150 ~~~~~~~~~------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 150 VTVGVDEVP------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp ECSBBSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred EcCCHHHHH------HHHHHhcCCCcEEEEEECC
Confidence 999999996 6789999999999998654
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.4e-13 Score=125.29 Aligned_cols=101 Identities=12% Similarity=0.089 Sum_probs=73.7
Q ss_pred HHHHhhCCCCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCC--CCCCCc
Q 023470 89 NLYRQMLRPGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKL--EFDHCS 157 (282)
Q Consensus 89 ~~~~~~~~~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l--~~~~~s 157 (282)
..+...+.++.+|||||||.|...... ..+.+|+|+|+|+.+++.|+. ...+.+.++ +++ .+++++
T Consensus 58 ~~~~~~~~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~ 134 (569)
T 4azs_A 58 DNLSRALGRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRI---EEVIAALEEGE 134 (569)
T ss_dssp HHHHHHHTSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCH---HHHHHHCCTTS
T ss_pred HHHHhhcCCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCH---HHHhhhccCCC
Confidence 334445567789999999988643322 268899999999999875541 135666666 555 456789
Q ss_pred eeEEEecchhhccCCHHH--HHHHHHHcccCCcEEEE
Q 023470 158 FDAVVCAVSVQYLQQPEK--VFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~--~l~~~~r~LkpgG~li~ 192 (282)
||+|+|..++||++|+.. .+..+.+.|+++|..++
T Consensus 135 fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~ 171 (569)
T 4azs_A 135 FDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVI 171 (569)
T ss_dssp CSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEE
T ss_pred ccEEEECcchhcCCCHHHHHHHHHHHHHhccccceee
Confidence 999999999999988764 35567778888887554
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=102.76 Aligned_cols=104 Identities=18% Similarity=0.204 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhCCCCCeEEEeCCcccchhh---hhc-CCCeEEEEcCCHHHHHhCCC-------------CCceEEeecc
Q 023470 84 ISTLTNLYRQMLRPGSEVLDLMSSWVSHLP---QEV-SYKRVVGHGLNAQELAKNPR-------------LEYFIVKDLN 146 (282)
Q Consensus 84 ~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~---~~~-~~~~v~giD~s~~~l~~~~~-------------~~~~~~~d~~ 146 (282)
...+...+...+.++.+|||+|||+|.... ... +..+|+|+|+|+.+++.++. ...+...|.
T Consensus 64 ~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~- 142 (226)
T 1i1n_A 64 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG- 142 (226)
T ss_dssp HHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG-
T ss_pred HHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCc-
Confidence 334444443346678899999999876433 322 34699999999998865532 234556665
Q ss_pred cccCCCCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 147 QDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 147 ~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
......+++||+|++..+++++. +++.++|||||++++++..
T Consensus 143 --~~~~~~~~~fD~i~~~~~~~~~~------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 143 --RMGYAEEAPYDAIHVGAAAPVVP------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp --GGCCGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred --ccCcccCCCcCEEEECCchHHHH------HHHHHhcCCCcEEEEEEec
Confidence 33334467899999999887764 6899999999999998753
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.5e-12 Score=105.06 Aligned_cols=111 Identities=9% Similarity=-0.047 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhhh--hcCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCC
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQ--EVSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLE 152 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~--~~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~ 152 (282)
..+.+...+.... ++.+|||+|||+|..... .....+|+|+|+|+.|++.++. ...+...|+. ..++
T Consensus 41 ~~~~l~~~l~~~~-~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~--~~~~ 117 (202)
T 2fpo_A 41 VRETLFNWLAPVI-VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAM--SFLA 117 (202)
T ss_dssp HHHHHHHHHHHHH-TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHH--HHHS
T ss_pred HHHHHHHHHHhhc-CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHH--HHHh
Confidence 3344444443321 568999999999875432 2234599999999999976542 2345555552 1245
Q ss_pred CCCCceeEEEecchhhccCCHHHHHHHHHH--cccCCcEEEEEEcCc
Q 023470 153 FDHCSFDAVVCAVSVQYLQQPEKVFAEVFR--VLKPGGVFIVSFSNR 197 (282)
Q Consensus 153 ~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r--~LkpgG~li~~~~~~ 197 (282)
..+++||+|++...++ ..+...+++++.+ +|||||.++++....
T Consensus 118 ~~~~~fD~V~~~~p~~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 118 QKGTPHNIVFVDPPFR-RGLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp SCCCCEEEEEECCSSS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred hcCCCCCEEEECCCCC-CCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 5567899999987643 5677888898866 599999999987643
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.8e-12 Score=105.83 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=68.2
Q ss_pred CCCCCeEEEeCCcccchh---hhhc-CCCeEEEEcCCHHHH----HhCC--CCCceEEeecccccCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEV-SYKRVVGHGLNAQEL----AKNP--RLEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~-~~~~v~giD~s~~~l----~~~~--~~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
+.++.+|||+|||+|... +... +..+|+|+|+|+.|+ +.++ .+..+..+|+.....+++.+++||+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 456789999999988643 3333 457999999997654 3332 33456666663211245557899999996
Q ss_pred chhhccCCH-HHHHHHHHHcccCCcEEEEEEc
Q 023470 165 VSVQYLQQP-EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ~~l~~~~~~-~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.. .++. ..++.++.++|||||.+++++.
T Consensus 155 ~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 155 VA---QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp CC---CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC---CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 54 2232 4468899999999999999765
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=110.98 Aligned_cols=96 Identities=17% Similarity=0.153 Sum_probs=69.4
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC-----------CceEEeecccccCCCCCCCceeEEE
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL-----------EYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~-----------~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
++.+|||+|||+|... +...++.+|+|+|+|+.|++.++.+ ..+...|+ .. ++++++||+|+
T Consensus 222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~---~~-~~~~~~fD~Ii 297 (375)
T 4dcm_A 222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA---LS-GVEPFRFNAVL 297 (375)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECST---TT-TCCTTCEEEEE
T ss_pred CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechh---hc-cCCCCCeeEEE
Confidence 3579999999988643 3334678999999999999765532 23355565 22 45678999999
Q ss_pred ecchhhccCC-----HHHHHHHHHHcccCCcEEEEEEcC
Q 023470 163 CAVSVQYLQQ-----PEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 163 ~~~~l~~~~~-----~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++..+|+... ...+++++.++|||||.+++....
T Consensus 298 ~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 298 CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp ECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred ECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 9988876422 235899999999999999997654
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.26 E-value=5e-12 Score=108.55 Aligned_cols=97 Identities=13% Similarity=0.019 Sum_probs=67.3
Q ss_pred hCCCCCeEEEeCCcccchhhhhcCCCeEEEEcCCHHHHHhCCC----------CCceE--EeecccccCCCCCCCceeEE
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPR----------LEYFI--VKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~~~~~~v~giD~s~~~l~~~~~----------~~~~~--~~d~~~~~~l~~~~~s~D~v 161 (282)
.+.++.+|||+|||+|..........+|+|+|+|+ |+..++. ...+. .+|+ ..++ +++||+|
T Consensus 71 ~~~~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~---~~l~--~~~fD~V 144 (265)
T 2oxt_A 71 YVELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDI---HTLP--VERTDVI 144 (265)
T ss_dssp SCCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCT---TTSC--CCCCSEE
T ss_pred CCCCCCEEEEeCcCCCHHHHHHHHcCcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCH---hHCC--CCCCcEE
Confidence 45578899999999886533322227999999998 6433221 12334 4455 4554 6899999
Q ss_pred EecchhhccCCHH-------HHHHHHHHcccCCc--EEEEEEcCc
Q 023470 162 VCAVSVQYLQQPE-------KVFAEVFRVLKPGG--VFIVSFSNR 197 (282)
Q Consensus 162 ~~~~~l~~~~~~~-------~~l~~~~r~LkpgG--~li~~~~~~ 197 (282)
+|..+ ++..++. .+++++.++||||| .+++.+..+
T Consensus 145 ~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~ 188 (265)
T 2oxt_A 145 MCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCP 188 (265)
T ss_dssp EECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCT
T ss_pred EEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCC
Confidence 99877 5544431 37899999999999 999887553
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=106.62 Aligned_cols=95 Identities=25% Similarity=0.289 Sum_probs=73.4
Q ss_pred CCCCCeEEEeCCcccchhh---hhc-CCCeEEEEcCCHHHHHhCCC-----------CCceEEeecccccCCCCCCCcee
Q 023470 95 LRPGSEVLDLMSSWVSHLP---QEV-SYKRVVGHGLNAQELAKNPR-----------LEYFIVKDLNQDQKLEFDHCSFD 159 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~---~~~-~~~~v~giD~s~~~l~~~~~-----------~~~~~~~d~~~~~~l~~~~~s~D 159 (282)
+.++.+|||+|||+|.... ... +..+|+++|+|+.+++.++. +..+...|+ .+.++++++||
T Consensus 97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~---~~~~~~~~~~D 173 (280)
T 1i9g_A 97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL---ADSELPDGSVD 173 (280)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG---GGCCCCTTCEE
T ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECch---HhcCCCCCcee
Confidence 4578899999999876433 222 47899999999998865432 234555665 55566678999
Q ss_pred EEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 160 AVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 160 ~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+|++ +++++..+++++.++|||||.+++.++..
T Consensus 174 ~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 174 RAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp EEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred EEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 9998 55688899999999999999999998764
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.4e-12 Score=107.86 Aligned_cols=97 Identities=19% Similarity=0.116 Sum_probs=68.6
Q ss_pred CCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCC--CCCCceeEEEe
Q 023470 97 PGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLE--FDHCSFDAVVC 163 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~--~~~~s~D~v~~ 163 (282)
++.+|||+|||+|...... ....+|+|+|+++.+++.++. ...+..+|+ .+++ +++++||+|++
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~---~~~~~~~~~~~fD~Ii~ 125 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDL---KKITDLIPKERADIVTC 125 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCG---GGGGGTSCTTCEEEEEE
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcH---HHhhhhhccCCccEEEE
Confidence 6789999999988644332 233499999999999876542 235566666 3333 45789999999
Q ss_pred cchhhcc--------------------CCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 164 AVSVQYL--------------------QQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 164 ~~~l~~~--------------------~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+-...+. .+.+.+++++.++|||||++++..+.
T Consensus 126 npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 178 (259)
T 3lpm_A 126 NPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP 178 (259)
T ss_dssp CCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred CCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH
Confidence 7332222 13457999999999999999997653
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.25 E-value=6.3e-12 Score=106.91 Aligned_cols=94 Identities=21% Similarity=0.243 Sum_probs=72.1
Q ss_pred CCCCCeEEEeCCcccchh---hhh-cCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEE
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQE-VSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~-~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
+.++.+|||+|||+|... +.. .+..+|+|+|+|+.+++.++.+ ..+...|+ .+ ++++++||+|
T Consensus 91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~-~~~~~~~D~v 166 (255)
T 3mb5_A 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDI---YE-GIEEENVDHV 166 (255)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCG---GG-CCCCCSEEEE
T ss_pred CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECch---hh-ccCCCCcCEE
Confidence 457889999999987643 333 2478999999999988765432 34555665 32 2567889999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
++ +.+++..+++++.++|||||.+++..+..
T Consensus 167 ~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 197 (255)
T 3mb5_A 167 IL-----DLPQPERVVEHAAKALKPGGFFVAYTPCS 197 (255)
T ss_dssp EE-----CSSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred EE-----CCCCHHHHHHHHHHHcCCCCEEEEEECCH
Confidence 98 46688889999999999999999987654
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-12 Score=110.47 Aligned_cols=97 Identities=19% Similarity=0.079 Sum_probs=67.3
Q ss_pred hCCCCCeEEEeCCcccchhhhhcCCCeEEEEcCCHHHHHhCCC----------CCceE--EeecccccCCCCCCCceeEE
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPR----------LEYFI--VKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~~~~~~v~giD~s~~~l~~~~~----------~~~~~--~~d~~~~~~l~~~~~s~D~v 161 (282)
.+.++.+|||+|||+|..........+|+|+|+|+ |+..++. ...+. .+|+ ..++ +++||+|
T Consensus 79 ~~~~g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~---~~l~--~~~fD~V 152 (276)
T 2wa2_A 79 GVELKGTVVDLGCGRGSWSYYAASQPNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDV---TKME--PFQADTV 152 (276)
T ss_dssp SCCCCEEEEEESCTTCHHHHHHHTSTTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCG---GGCC--CCCCSEE
T ss_pred CCCCCCEEEEeccCCCHHHHHHHHcCCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcH---hhCC--CCCcCEE
Confidence 34578899999999886543322227999999998 6433221 12344 4555 4554 6899999
Q ss_pred EecchhhccCCHH-------HHHHHHHHcccCCc--EEEEEEcCc
Q 023470 162 VCAVSVQYLQQPE-------KVFAEVFRVLKPGG--VFIVSFSNR 197 (282)
Q Consensus 162 ~~~~~l~~~~~~~-------~~l~~~~r~LkpgG--~li~~~~~~ 197 (282)
+|..+ ++..++. .+++++.++||||| .+++.+..+
T Consensus 153 vsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~ 196 (276)
T 2wa2_A 153 LCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNP 196 (276)
T ss_dssp EECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred EECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCC
Confidence 99887 5544321 37999999999999 999876554
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-11 Score=103.92 Aligned_cols=97 Identities=13% Similarity=0.169 Sum_probs=70.6
Q ss_pred CCCCCeEEEeCCcccchhhh---hcCCCeEEEEcCCHHHHHhCC----------------CCCceEEeecccccCCC--C
Q 023470 95 LRPGSEVLDLMSSWVSHLPQ---EVSYKRVVGHGLNAQELAKNP----------------RLEYFIVKDLNQDQKLE--F 153 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~---~~~~~~v~giD~s~~~l~~~~----------------~~~~~~~~d~~~~~~l~--~ 153 (282)
++++.+|||||||+|..... ..+..+|+|+|+|+.+++.++ .+..+..+|+. ..++ +
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~--~~l~~~~ 124 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAM--KFLPNFF 124 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTT--SCGGGTS
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHH--HHHHHhc
Confidence 44677899999998875433 335679999999999885432 22345666662 1244 6
Q ss_pred CCCceeEEEecchhhccCCH-------------HHHHHHHHHcccCCcEEEEEEcCch
Q 023470 154 DHCSFDAVVCAVSVQYLQQP-------------EKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 154 ~~~s~D~v~~~~~l~~~~~~-------------~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
+++++|.|+..+ +++ ..+++++.++|||||.+++.+....
T Consensus 125 ~~~~~d~v~~~~-----p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~ 177 (246)
T 2vdv_E 125 EKGQLSKMFFCF-----PDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKD 177 (246)
T ss_dssp CTTCEEEEEEES-----CCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHH
T ss_pred cccccCEEEEEC-----CCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHH
Confidence 678999998654 333 4799999999999999999876543
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.8e-12 Score=112.31 Aligned_cols=100 Identities=25% Similarity=0.283 Sum_probs=68.8
Q ss_pred hCCCCCeEEEeCCcccchh---hhhc-CCCeEEEEcCCHHHHHhCCC-------------------CCceEEeecccccC
Q 023470 94 MLRPGSEVLDLMSSWVSHL---PQEV-SYKRVVGHGLNAQELAKNPR-------------------LEYFIVKDLNQDQK 150 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~---~~~~-~~~~v~giD~s~~~l~~~~~-------------------~~~~~~~d~~~~~~ 150 (282)
.+.++.+|||+|||.|... +... +..+|+|+|+++.+++.++. +..+...|+ .+
T Consensus 102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~---~~ 178 (336)
T 2b25_A 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI---SG 178 (336)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT---TC
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECCh---HH
Confidence 3567889999999987643 3322 34899999999998865432 234556665 33
Q ss_pred C--CCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHH
Q 023470 151 L--EFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYE 201 (282)
Q Consensus 151 l--~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~ 201 (282)
. ++++++||+|++.. +++..++.++.++|||||.+++..++.....
T Consensus 179 ~~~~~~~~~fD~V~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~ 226 (336)
T 2b25_A 179 ATEDIKSLTFDAVALDM-----LNPHVTLPVFYPHLKHGGVCAVYVVNITQVI 226 (336)
T ss_dssp CC-------EEEEEECS-----SSTTTTHHHHGGGEEEEEEEEEEESSHHHHH
T ss_pred cccccCCCCeeEEEECC-----CCHHHHHHHHHHhcCCCcEEEEEeCCHHHHH
Confidence 3 45667899999853 4555689999999999999999887654433
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.24 E-value=9e-12 Score=103.86 Aligned_cols=95 Identities=14% Similarity=0.085 Sum_probs=69.6
Q ss_pred CCCeEEEeCCcccchh---hhhc-CCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCC-----CCCce
Q 023470 97 PGSEVLDLMSSWVSHL---PQEV-SYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEF-----DHCSF 158 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~-~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~-----~~~s~ 158 (282)
++.+|||||||+|... +... ++.+|+|+|+|+.|++.++.+ ..+..+|... .++. ..++|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~f 135 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQD--LIPQLKKKYDVDTL 135 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH--HGGGTTTTSCCCCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHH--HHHHHHHhcCCCce
Confidence 5689999999987543 3332 378999999999998765431 3455666421 1221 22689
Q ss_pred eEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 159 DAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 159 D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
|+|++....++..+...++.++ ++|||||.+++..
T Consensus 136 D~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~ 170 (221)
T 3u81_A 136 DMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADN 170 (221)
T ss_dssp SEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESC
T ss_pred EEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeC
Confidence 9999998888876666788888 9999999999864
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.24 E-value=9.6e-12 Score=113.48 Aligned_cols=97 Identities=15% Similarity=0.114 Sum_probs=67.9
Q ss_pred CCCCCeEEEeCCcccchhhh---hcCCCeEEEEcCCHHHHHhC-------CC----------CCceEEeecccccCCCC-
Q 023470 95 LRPGSEVLDLMSSWVSHLPQ---EVSYKRVVGHGLNAQELAKN-------PR----------LEYFIVKDLNQDQKLEF- 153 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~---~~~~~~v~giD~s~~~l~~~-------~~----------~~~~~~~d~~~~~~l~~- 153 (282)
+.++.+|||||||+|..... ..+..+|+|+|+|+.+++.+ +. +..+..++... ...++
T Consensus 240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~-~~~~~~ 318 (433)
T 1u2z_A 240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV-DNNRVA 318 (433)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST-TCHHHH
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccc-cccccc
Confidence 45788999999999875433 23556899999999887655 21 22333333210 11112
Q ss_pred -CCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 154 -DHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 154 -~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
..++||+|+++.++ +.+++..+|+++.++|||||++++.
T Consensus 319 ~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 319 ELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp HHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred cccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEe
Confidence 24789999998776 4567888999999999999999886
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-11 Score=102.69 Aligned_cols=93 Identities=10% Similarity=0.018 Sum_probs=70.0
Q ss_pred CCCeEEEeCCcccch---hhhh----cCCCeEEEEcCCHHHHHhCCC---CCceEEeecccccC---CCC-CCCceeEEE
Q 023470 97 PGSEVLDLMSSWVSH---LPQE----VSYKRVVGHGLNAQELAKNPR---LEYFIVKDLNQDQK---LEF-DHCSFDAVV 162 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~----~~~~~v~giD~s~~~l~~~~~---~~~~~~~d~~~~~~---l~~-~~~s~D~v~ 162 (282)
++.+|||||||+|.. ++.. .+..+|+|+|+|+.|++.++. +..+..+|. .+ ++. .+.+||+|+
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~---~~~~~l~~~~~~~fD~I~ 157 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDC---SDLTTFEHLREMAHPLIF 157 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCS---SCSGGGGGGSSSCSSEEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcc---hhHHHHHhhccCCCCEEE
Confidence 467999999998763 3333 257899999999999887653 345667776 33 343 334799999
Q ss_pred ecchhhccCCHHHHHHHHHH-cccCCcEEEEEEc
Q 023470 163 CAVSVQYLQQPEKVFAEVFR-VLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r-~LkpgG~li~~~~ 195 (282)
+... |. +...++.++.| +|||||++++...
T Consensus 158 ~d~~--~~-~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 158 IDNA--HA-NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EESS--CS-SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred ECCc--hH-hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 8765 43 77889999998 9999999999753
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.3e-12 Score=106.07 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhh---hhc-----CCCeEEEEcCCHHHHHhCCC-------------CCceE
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLP---QEV-----SYKRVVGHGLNAQELAKNPR-------------LEYFI 141 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~---~~~-----~~~~v~giD~s~~~l~~~~~-------------~~~~~ 141 (282)
....+.+.+...+.++.+|||||||+|.... ... +..+|+|+|+|+.+++.++. +..+.
T Consensus 66 ~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~ 145 (227)
T 2pbf_A 66 MHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKII 145 (227)
T ss_dssp HHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEE
T ss_pred HHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEE
Confidence 3334444444456788999999999876433 222 23699999999998865532 23455
Q ss_pred EeecccccCCC----CCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 142 VKDLNQDQKLE----FDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 142 ~~d~~~~~~l~----~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
..|. .... ..+++||+|++..+++++ ++++.++|||||++++.++.
T Consensus 146 ~~d~---~~~~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 146 HKNI---YQVNEEEKKELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp ECCG---GGCCHHHHHHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEEE
T ss_pred ECCh---HhcccccCccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEcc
Confidence 5665 3332 345789999999998876 47899999999999998763
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=103.68 Aligned_cols=104 Identities=19% Similarity=0.261 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhhhh---cC------CCeEEEEcCCHHHHHhCCC-------------CCce
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQE---VS------YKRVVGHGLNAQELAKNPR-------------LEYF 140 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~---~~------~~~v~giD~s~~~l~~~~~-------------~~~~ 140 (282)
....+.+.+...+.++.+|||+|||+|...... .+ ..+|+|+|+++.+++.++. +..+
T Consensus 70 ~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~ 149 (227)
T 1r18_A 70 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI 149 (227)
T ss_dssp HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEE
Confidence 344444444434667889999999987644322 22 2599999999999876542 2345
Q ss_pred EEeecccccCCCCCC-CceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 141 IVKDLNQDQKLEFDH-CSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 141 ~~~d~~~~~~l~~~~-~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
...|. .. ++++ ++||+|++..+++|+. +++.++|||||++++.+..
T Consensus 150 ~~~d~---~~-~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 150 VEGDG---RK-GYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp EESCG---GG-CCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred EECCc---cc-CCCcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEec
Confidence 55555 22 3333 7899999999998875 7899999999999999764
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.7e-12 Score=112.78 Aligned_cols=95 Identities=13% Similarity=0.117 Sum_probs=71.2
Q ss_pred CCCeEEEeCCcccchhh---hhcCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCceeEEEecch
Q 023470 97 PGSEVLDLMSSWVSHLP---QEVSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~---~~~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
++.+|||+|||+|.... ...+..+|+|+|+|+.|++.++.+ ..+...|. .. ..+++||+|+++..
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~---~~--~~~~~fD~Iv~~~~ 270 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNV---FS--EVKGRFDMIISNPP 270 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECST---TT--TCCSCEEEEEECCC
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccc---cc--cccCCeeEEEECCC
Confidence 46789999999886543 333557999999999998765422 23444444 22 33678999999998
Q ss_pred hhc-----cCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 167 VQY-----LQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 167 l~~-----~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+|+ ..+...++++++++|||||.+++....
T Consensus 271 ~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 271 FHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp CCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred cccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 875 345678999999999999999998654
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.5e-12 Score=111.20 Aligned_cols=90 Identities=12% Similarity=0.038 Sum_probs=71.2
Q ss_pred CeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEecch
Q 023470 99 SEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 99 ~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
.+|||+|||+|... +...+..+++++|+ +.+++.++. ...+..+|+ .+ +++ ++||+|++..+
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~-~~~-~~~D~v~~~~v 242 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDM---LQ-EVP-SNGDIYLLSRI 242 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCT---TT-CCC-SSCSEEEEESC
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCC---CC-CCC-CCCCEEEEchh
Confidence 89999999988643 33346789999999 888765432 345666666 33 444 67999999999
Q ss_pred hhccCCHH--HHHHHHHHcccCCcEEEEEE
Q 023470 167 VQYLQQPE--KVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 167 l~~~~~~~--~~l~~~~r~LkpgG~li~~~ 194 (282)
+||.++.. .++++++++|||||++++..
T Consensus 243 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e 272 (334)
T 2ip2_A 243 IGDLDEAASLRLLGNCREAMAGDGRVVVIE 272 (334)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99998766 89999999999999999874
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.23 E-value=6.1e-11 Score=96.83 Aligned_cols=105 Identities=21% Similarity=0.188 Sum_probs=69.8
Q ss_pred HHHHHHHhh--CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCC--------C
Q 023470 86 TLTNLYRQM--LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEF--------D 154 (282)
Q Consensus 86 ~~~~~~~~~--~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~--------~ 154 (282)
.+.++.... +.++.+|||+|||+|....... ...+|+|+|+++.. ......+..+|+. +.+. .
T Consensus 12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~---~~~~v~~~~~D~~---~~~~~~~~~~~~~ 85 (191)
T 3dou_A 12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME---EIAGVRFIRCDIF---KETIFDDIDRALR 85 (191)
T ss_dssp HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC---CCTTCEEEECCTT---SSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc---cCCCeEEEEcccc---CHHHHHHHHHHhh
Confidence 455555543 5678999999999876433222 37899999999742 1234567788873 3321 1
Q ss_pred ---CCceeEEEecchhhcc-----------CCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 155 ---HCSFDAVVCAVSVQYL-----------QQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 155 ---~~s~D~v~~~~~l~~~-----------~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.++||+|+|....... ...+.+++.+.++|||||.|++.+..
T Consensus 86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~ 141 (191)
T 3dou_A 86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ 141 (191)
T ss_dssp HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence 1489999996432211 11246899999999999999987643
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.8e-11 Score=104.74 Aligned_cols=100 Identities=16% Similarity=0.114 Sum_probs=70.0
Q ss_pred CCCCeEEEeCCcccchhhh--hcCCCeEEEEcC-CHHHHHhCCCCC------------------ceEEeecccc-cCCC-
Q 023470 96 RPGSEVLDLMSSWVSHLPQ--EVSYKRVVGHGL-NAQELAKNPRLE------------------YFIVKDLNQD-QKLE- 152 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~--~~~~~~v~giD~-s~~~l~~~~~~~------------------~~~~~d~~~~-~~l~- 152 (282)
.++.+|||+|||+|..... ..+..+|+|+|+ |+.+++.++.+. .+...+.... ..+.
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 4678999999998864322 223459999999 899886543221 1221222110 1111
Q ss_pred -CCCCceeEEEecchhhccCCHHHHHHHHHHccc---C--CcEEEEEEc
Q 023470 153 -FDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLK---P--GGVFIVSFS 195 (282)
Q Consensus 153 -~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~Lk---p--gG~li~~~~ 195 (282)
+++++||+|+++.+++|.++...+++++.++|| | ||.+++.+.
T Consensus 158 ~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~ 206 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFT 206 (281)
T ss_dssp HHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEEC
T ss_pred hccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEE
Confidence 035789999999999999999999999999999 9 999887654
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-11 Score=110.38 Aligned_cols=95 Identities=12% Similarity=0.149 Sum_probs=72.2
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEe
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.++.+|||||||+|... +...+..+++++|+ +.+++.++. ...+...|+. + +++. .||+|++
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~-~~~~-~~D~v~~ 255 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFF---E-PLPR-KADAIIL 255 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTT---S-CCSS-CEEEEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCC---C-CCCC-CccEEEE
Confidence 46789999999988643 33346789999999 888765432 3456666662 2 3333 4999999
Q ss_pred cchhhccCCHH--HHHHHHHHcccCCcEEEEEEcC
Q 023470 164 AVSVQYLQQPE--KVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 164 ~~~l~~~~~~~--~~l~~~~r~LkpgG~li~~~~~ 196 (282)
..++||+++.. .++++++++|||||++++....
T Consensus 256 ~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 256 SFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 99999998764 7999999999999999987543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.22 E-value=9.1e-12 Score=105.83 Aligned_cols=94 Identities=13% Similarity=0.066 Sum_probs=67.4
Q ss_pred CCCeEEEeCCcccchhh---hh--cCCCeEEEEcCCHHHHHhCCC----C------------------------------
Q 023470 97 PGSEVLDLMSSWVSHLP---QE--VSYKRVVGHGLNAQELAKNPR----L------------------------------ 137 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~---~~--~~~~~v~giD~s~~~l~~~~~----~------------------------------ 137 (282)
++.+|||+|||+|.... .. .+..+|+|+|+|+.|++.++. .
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 46789999999886433 22 245799999999999876541 1
Q ss_pred ---Cc-------------eEEeecccccCCCC-----CCCceeEEEecchhhccCC---------HHHHHHHHHHcccCC
Q 023470 138 ---EY-------------FIVKDLNQDQKLEF-----DHCSFDAVVCAVSVQYLQQ---------PEKVFAEVFRVLKPG 187 (282)
Q Consensus 138 ---~~-------------~~~~d~~~~~~l~~-----~~~s~D~v~~~~~l~~~~~---------~~~~l~~~~r~Lkpg 187 (282)
.. +...|+ .+... ..++||+|+|+..+.+..+ ...++++++++||||
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~---~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 207 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADV---FDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH 207 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCT---TCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred hhhhhhhccccccccccceeeccc---ccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCC
Confidence 12 556665 33211 3458999999876655543 347999999999999
Q ss_pred cEEEEE
Q 023470 188 GVFIVS 193 (282)
Q Consensus 188 G~li~~ 193 (282)
|+++++
T Consensus 208 G~l~~~ 213 (250)
T 1o9g_A 208 AVIAVT 213 (250)
T ss_dssp CEEEEE
T ss_pred cEEEEe
Confidence 999984
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-11 Score=108.14 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=69.0
Q ss_pred CCCCeEEEeCCcccchhhhh---cCCCeEEEEcCCHHHHHhCCC------------CCceEEeecccccCCCC--CCCce
Q 023470 96 RPGSEVLDLMSSWVSHLPQE---VSYKRVVGHGLNAQELAKNPR------------LEYFIVKDLNQDQKLEF--DHCSF 158 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~---~~~~~v~giD~s~~~l~~~~~------------~~~~~~~d~~~~~~l~~--~~~s~ 158 (282)
+++.+|||||||.|...... .+..+|+++|+|+.+++.+++ ...+..+|. ..+.. .+++|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~---~~~~~~~~~~~f 170 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDG---LAFVRQTPDNTY 170 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH---HHHHHSSCTTCE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcH---HHHHHhccCCce
Confidence 56789999999988654433 246799999999999876542 224555555 33322 46889
Q ss_pred eEEEecchhhccCCH----HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 159 DAVVCAVSVQYLQQP----EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 159 D~v~~~~~l~~~~~~----~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
|+|++.....+.+.. ..+++++.++|||||.+++...++
T Consensus 171 DvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~ 213 (304)
T 3bwc_A 171 DVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI 213 (304)
T ss_dssp EEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred eEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc
Confidence 999998765544322 579999999999999999986654
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-11 Score=110.12 Aligned_cols=94 Identities=11% Similarity=0.051 Sum_probs=70.2
Q ss_pred CCCCeEEEeCCcccchhhh--hcCCCeEEEEcCCHHHHHhCC---------CCCceEEeecccccCCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSHLPQ--EVSYKRVVGHGLNAQELAKNP---------RLEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~--~~~~~~v~giD~s~~~l~~~~---------~~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++.+|||||||+|..... ..+..+|+|+|+|+ |++.++ ....+..+|+ .+++++ ++||+|++.
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~---~~~~~~-~~~D~Ivs~ 123 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKV---EEVSLP-EQVDIIISE 123 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCT---TTCCCS-SCEEEEEEC
T ss_pred CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcch---hhCCCC-CceeEEEEe
Confidence 4678999999998864332 23556999999996 664432 2235666666 566654 679999999
Q ss_pred chhhccC--CHHHHHHHHHHcccCCcEEEEEE
Q 023470 165 VSVQYLQ--QPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 165 ~~l~~~~--~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
.+++|+. +....+.++.++|||||.++++.
T Consensus 124 ~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 124 PMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp CCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred CchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 8888875 45678889999999999998654
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-11 Score=102.73 Aligned_cols=92 Identities=14% Similarity=0.118 Sum_probs=68.8
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCC-CCCCceeEEEe
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLE-FDHCSFDAVVC 163 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~-~~~~s~D~v~~ 163 (282)
++.+|||||||+|... +...+..+|+|+|+|+.+++.++. +..+..+|.. ..++ ..+++||+|++
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNAL--EQFENVNDKVYDMIFI 148 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGG--GCHHHHTTSCEEEEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHH--HHHHhhccCCccEEEE
Confidence 6789999999988643 332357899999999999865542 3456666663 2233 33688999997
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
... ..+...+++++.++|||||.+++.
T Consensus 149 ~~~---~~~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 149 DAA---KAQSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp ETT---SSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCc---HHHHHHHHHHHHHhcCCCeEEEEe
Confidence 653 456688999999999999999885
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4.8e-11 Score=106.78 Aligned_cols=92 Identities=13% Similarity=0.051 Sum_probs=73.3
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC--CceEEeecccccCCCCCCCceeEEEecchhhcc
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL--EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~--~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~ 170 (282)
.+..+|||||||+|... +...+..+++++|+ +.+++.++.. ..+..+|+ .. +++ +||+|++.+++||+
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~---~~-~~~--~~D~v~~~~vlh~~ 264 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGNENLNFVGGDM---FK-SIP--SADAVLLKWVLHDW 264 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCCSSEEEEECCT---TT-CCC--CCSEEEEESCGGGS
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccCCCcEEEeCcc---CC-CCC--CceEEEEcccccCC
Confidence 35689999999988654 33346789999999 7899887754 34556665 33 554 49999999999999
Q ss_pred CCHH--HHHHHHHHcccC---CcEEEEEE
Q 023470 171 QQPE--KVFAEVFRVLKP---GGVFIVSF 194 (282)
Q Consensus 171 ~~~~--~~l~~~~r~Lkp---gG~li~~~ 194 (282)
++.+ .++++++++||| ||++++..
T Consensus 265 ~d~~~~~~l~~~~~~L~p~~~gG~l~i~e 293 (358)
T 1zg3_A 265 NDEQSLKILKNSKEAISHKGKDGKVIIID 293 (358)
T ss_dssp CHHHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred CHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 9877 899999999999 99998863
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.7e-11 Score=100.82 Aligned_cols=99 Identities=14% Similarity=0.066 Sum_probs=71.6
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
+.++.+|||+|||+|....... ...+|+++|+|+.+++.++. ...+...|+ .+..+++++||+|++
T Consensus 89 ~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~v~~- 164 (248)
T 2yvl_A 89 LNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDF---KDAEVPEGIFHAAFV- 164 (248)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCT---TTSCCCTTCBSEEEE-
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcCh---hhcccCCCcccEEEE-
Confidence 4578899999999876432221 27899999999998865542 223444554 333225678999998
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHH
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYE 201 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~ 201 (282)
+.+++..+++++.++|||||.+++..+......
T Consensus 165 ----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~ 197 (248)
T 2yvl_A 165 ----DVREPWHYLEKVHKSLMEGAPVGFLLPTANQVI 197 (248)
T ss_dssp ----CSSCGGGGHHHHHHHBCTTCEEEEEESSHHHHH
T ss_pred ----CCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHH
Confidence 456788899999999999999999988653333
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-11 Score=102.17 Aligned_cols=92 Identities=14% Similarity=0.165 Sum_probs=68.2
Q ss_pred CCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCC--CCceeEEE
Q 023470 97 PGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFD--HCSFDAVV 162 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~--~~s~D~v~ 162 (282)
++.+|||+|||+|.. ++...++.+|+++|+|+.+++.++. ...+..+|.. ..++.. +++||+|+
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDAL--QLGEKLELYPLFDVLF 131 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGG--GSHHHHTTSCCEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHH--HHHHhcccCCCccEEE
Confidence 678999999998764 3333457899999999998866542 2344455542 112322 57899999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+.... .+...+++++.++|||||.+++.
T Consensus 132 ~~~~~---~~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 132 IDAAK---GQYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp EEGGG---SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred ECCCH---HHHHHHHHHHHHHcCCCeEEEEE
Confidence 98764 36789999999999999999987
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.3e-11 Score=105.17 Aligned_cols=99 Identities=8% Similarity=0.027 Sum_probs=71.5
Q ss_pred HHHhhCCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCce
Q 023470 90 LYRQMLRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSF 158 (282)
Q Consensus 90 ~~~~~~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~ 158 (282)
.+...+.++.+|||+|||+|....... ...+|+|+|+|+.|++.++.+ ..+..+|. .++.. +++|
T Consensus 118 ~l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~---~~~~~-~~~f 193 (278)
T 2frn_A 118 RMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN---RDFPG-ENIA 193 (278)
T ss_dssp HHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT---TTCCC-CSCE
T ss_pred HHHHhCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCH---HHhcc-cCCc
Confidence 344556778999999999886433222 233799999999998765421 24566666 45544 6889
Q ss_pred eEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 159 DAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 159 D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
|+|++... .+...++.++.++|||||.+++....
T Consensus 194 D~Vi~~~p----~~~~~~l~~~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 194 DRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp EEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred cEEEECCc----hhHHHHHHHHHHHCCCCeEEEEEEee
Confidence 99999543 34567899999999999999987543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-11 Score=102.12 Aligned_cols=93 Identities=17% Similarity=0.211 Sum_probs=68.5
Q ss_pred CCCCCeEEEeCCcccchhhhh---cCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCC-CceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE---VSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDH-CSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~---~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~-~s~D~v~ 162 (282)
+.++.+|||+|||+|...... .+ .+|+|+|+|+.+++.++. ...+..+|. ..++++ ..||+|+
T Consensus 89 ~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~----~~~~~~~~~fD~Ii 163 (235)
T 1jg1_A 89 LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG----SKGFPPKAPYDVII 163 (235)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG----GGCCGGGCCEEEEE
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc----ccCCCCCCCccEEE
Confidence 557789999999988654332 24 799999999998866542 223445553 223333 3499999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
+..+++++. .++.++|||||++++.+++..
T Consensus 164 ~~~~~~~~~------~~~~~~L~pgG~lvi~~~~~~ 193 (235)
T 1jg1_A 164 VTAGAPKIP------EPLIEQLKIGGKLIIPVGSYH 193 (235)
T ss_dssp ECSBBSSCC------HHHHHTEEEEEEEEEEECSSS
T ss_pred ECCcHHHHH------HHHHHhcCCCcEEEEEEecCC
Confidence 999999886 378999999999999987653
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.18 E-value=4.7e-11 Score=99.74 Aligned_cols=98 Identities=17% Similarity=0.150 Sum_probs=66.5
Q ss_pred CCCCCeEEEeCCcccchh---hhhc-CCCeEEEEcCCHHHHHhC----C--CCCceEEeecccccCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEV-SYKRVVGHGLNAQELAKN----P--RLEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~-~~~~v~giD~s~~~l~~~----~--~~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
+.++.+|||+|||+|... +... +..+|+|+|+|+.|++.+ + .+..+..+|+.....+...+++||+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 446789999999987643 3332 357999999999876432 2 23456666663211111123589999987
Q ss_pred chhhccCCHH-HHHHHHHHcccCCcEEEEEEc
Q 023470 165 VSVQYLQQPE-KVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ~~l~~~~~~~-~~l~~~~r~LkpgG~li~~~~ 195 (282)
.. .++.. .+++++.++|||||.+++.+.
T Consensus 151 ~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~ 179 (227)
T 1g8a_A 151 VA---QPTQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp CC---STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC---CHhHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 65 23333 459999999999999998854
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.4e-11 Score=103.11 Aligned_cols=99 Identities=10% Similarity=0.008 Sum_probs=70.3
Q ss_pred CCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC------------CceEEeecccccCC-------CC
Q 023470 96 RPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL------------EYFIVKDLNQDQKL-------EF 153 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~------------~~~~~~d~~~~~~l-------~~ 153 (282)
.++.+|||+|||+|.. ++...+..+|+|+|+++.+++.++.+ ..+...|+ .++ ++
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~---~~~~~~~~~~~~ 111 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV---TLRAKARVEAGL 111 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCT---TCCHHHHHHTTC
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCH---HHHhhhhhhhcc
Confidence 3567999999998864 33334568999999999988654321 24556666 333 25
Q ss_pred CCCceeEEEecchhh----------------c--cCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 154 DHCSFDAVVCAVSVQ----------------Y--LQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 154 ~~~s~D~v~~~~~l~----------------~--~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
++++||+|+++--.. | ..+.+.+++.+.++|||||.+++..+..
T Consensus 112 ~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 173 (260)
T 2ozv_A 112 PDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ 173 (260)
T ss_dssp CTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred CCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH
Confidence 578999999982211 1 1246789999999999999999987643
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=7e-11 Score=106.01 Aligned_cols=91 Identities=18% Similarity=0.155 Sum_probs=68.5
Q ss_pred CCCeEEEeCCcccc--hhhhhcCCCeEEEEcCCHHHHHhCC------C---CCceEEeecccccCCCCCCCceeEEEec-
Q 023470 97 PGSEVLDLMSSWVS--HLPQEVSYKRVVGHGLNAQELAKNP------R---LEYFIVKDLNQDQKLEFDHCSFDAVVCA- 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~~--~~~~~~~~~~v~giD~s~~~l~~~~------~---~~~~~~~d~~~~~~l~~~~~s~D~v~~~- 164 (282)
++.+|||||||+|. .++...+..+|+|+|.|+ |++.++ + ...++.+++ +++.++ ++||+|+|-
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~---~~~~lp-e~~DvivsE~ 157 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPV---ETVELP-EQVDAIVSEW 157 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCT---TTCCCS-SCEEEEECCC
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeee---eeecCC-ccccEEEeec
Confidence 67899999999874 344445677999999995 554332 1 234566666 667665 679999994
Q ss_pred --chhhccCCHHHHHHHHHHcccCCcEEEE
Q 023470 165 --VSVQYLQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 165 --~~l~~~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
..+.+-...+.++....|+|||||.++-
T Consensus 158 ~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 158 MGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp CBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccccccchhhhHHHHHHhhCCCCceECC
Confidence 5666777889999999999999999863
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.9e-11 Score=105.90 Aligned_cols=106 Identities=16% Similarity=0.094 Sum_probs=67.7
Q ss_pred HHHHHHh-hCCCCCeEEEeCCcccchhhhhcCCCeEEEEcC----CHHHHHhCC--CC----CceEEe-ecccccCCCCC
Q 023470 87 LTNLYRQ-MLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGL----NAQELAKNP--RL----EYFIVK-DLNQDQKLEFD 154 (282)
Q Consensus 87 ~~~~~~~-~~~~~~~vLDiGcG~~~~~~~~~~~~~v~giD~----s~~~l~~~~--~~----~~~~~~-d~~~~~~l~~~ 154 (282)
+..+... .++++.+|||+|||+|..........+|+|+|+ ++.+++... .. ..+..+ |+ ..+ +
T Consensus 71 L~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~---~~l--~ 145 (305)
T 2p41_A 71 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDV---FFI--P 145 (305)
T ss_dssp HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCT---TTS--C
T ss_pred HHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHhhhcCCCCeEEEecccc---ccC--C
Confidence 3333433 345778999999998864433222268999999 565443221 11 233333 33 344 3
Q ss_pred CCceeEEEecchhh---ccCCHH---HHHHHHHHcccCCcEEEEEEcCc
Q 023470 155 HCSFDAVVCAVSVQ---YLQQPE---KVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 155 ~~s~D~v~~~~~l~---~~~~~~---~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.++||+|+|..+++ +..+.. .+|.++.++|||||.|++.+..+
T Consensus 146 ~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 146 PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 57899999986653 222322 47899999999999999987655
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=98.82 Aligned_cols=93 Identities=13% Similarity=0.089 Sum_probs=67.4
Q ss_pred CCCeEEEeCCcccchh---hhhcC-CCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCC--CCCceeEE
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVS-YKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEF--DHCSFDAV 161 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~-~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~--~~~s~D~v 161 (282)
++.+|||||||+|... +...+ ..+|+|+|+|+.+++.++. +..+..+|... .++. ..++||+|
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~--~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQ--SLESLGECPAFDLI 140 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHH--HHHTCCSCCCCSEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH--HHHhcCCCCCeEEE
Confidence 6789999999987643 33334 7899999999998865542 23556666521 1222 23589999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
++... ..+...+++++.++|||||.+++..
T Consensus 141 ~~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~ 170 (248)
T 3tfw_A 141 FIDAD---KPNNPHYLRWALRYSRPGTLIIGDN 170 (248)
T ss_dssp EECSC---GGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred EECCc---hHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 98653 4455789999999999999998874
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=5e-11 Score=100.36 Aligned_cols=93 Identities=19% Similarity=0.187 Sum_probs=56.6
Q ss_pred CCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCC-CceEEe---ecccc--cCCCCCCCceeEEEecchhh
Q 023470 97 PGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRL-EYFIVK---DLNQD--QKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~-~~~~~~---d~~~~--~~l~~~~~s~D~v~~~~~l~ 168 (282)
++.+|||||||+|...... .+..+|+|+|+|+.|++.++.. ...... ++... .+++ ...+|.+.+..++.
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~D~v~~ 114 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFE--QGRPSFTSIDVSFI 114 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCC--SCCCSEEEECCSSS
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcC--cCCCCEEEEEEEhh
Confidence 4669999999998654332 2335999999999998664322 111111 11000 1111 11233333333333
Q ss_pred ccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 169 YLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
++ ..++++++|+|||||.+++.+
T Consensus 115 ~l---~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 115 SL---DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp CG---GGTHHHHHHHSCTTCEEEEEE
T ss_pred hH---HHHHHHHHHhccCCCEEEEEE
Confidence 33 779999999999999999875
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.13 E-value=6.2e-11 Score=102.20 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=70.5
Q ss_pred CCCCCeEEEeCCcccchh---hhh-cCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEE
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQE-VSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~-~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
+.++.+|||+|||.|... +.. .+..+|+++|+|+.+++.++.+ ..+...|+ .+. +++++||+|
T Consensus 110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~-~~~~~~D~V 185 (277)
T 1o54_A 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI---SEG-FDEKDVDAL 185 (277)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG---GGC-CSCCSEEEE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH---HHc-ccCCccCEE
Confidence 457889999999987543 333 2478999999999988665422 23445554 333 556789999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
++ +.+++..+++++.++|||||.+++..+..
T Consensus 186 ~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (277)
T 1o54_A 186 FL-----DVPDPWNYIDKCWEALKGGGRFATVCPTT 216 (277)
T ss_dssp EE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred EE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 98 45688899999999999999999987643
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.1e-11 Score=110.03 Aligned_cols=93 Identities=11% Similarity=0.051 Sum_probs=69.3
Q ss_pred CCCCeEEEeCCcccchhhh--hcCCCeEEEEcCCHHHHHhCC---------CCCceEEeecccccCCCCCCCceeEEEec
Q 023470 96 RPGSEVLDLMSSWVSHLPQ--EVSYKRVVGHGLNAQELAKNP---------RLEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~--~~~~~~v~giD~s~~~l~~~~---------~~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++.+|||||||+|..... ..+..+|+|+|+|+ |++.++ ....+..+|+ .+++++ ++||+|+|.
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~---~~~~~~-~~fD~Ivs~ 231 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKV---EEVSLP-EQVDIIISE 231 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCT---TTCCCS-SCEEEEECC
T ss_pred cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECch---hhCccC-CCeEEEEEe
Confidence 3578999999998864322 23567999999998 775443 2245667776 555554 589999999
Q ss_pred chhhccCCH--HHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQP--EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~--~~~l~~~~r~LkpgG~li~~ 193 (282)
..++|+.+. ...+.++.++|||||.+++.
T Consensus 232 ~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 232 PMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp CCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred CchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 888887543 55788999999999999864
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.11 E-value=7.2e-11 Score=97.47 Aligned_cols=91 Identities=14% Similarity=0.068 Sum_probs=66.5
Q ss_pred CCCeEEEeCCcccchh---hhhcC-CCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEe
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVS-YKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~-~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
++.+|||+|||+|... +...+ +.+|+++|+|+.+++.++++ ..+..+|.. ..++..++ ||+|++
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~-fD~v~~ 132 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPL--GIAAGQRD-IDILFM 132 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHH--HHHTTCCS-EEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHH--HHhccCCC-CCEEEE
Confidence 5679999999988643 33334 78999999999998765532 234555552 12243346 999998
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
... ..+...+++++.++|||||.+++.
T Consensus 133 ~~~---~~~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 133 DCD---VFNGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp ETT---TSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCC---hhhhHHHHHHHHHhcCCCeEEEEE
Confidence 743 457788999999999999999986
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4e-10 Score=100.69 Aligned_cols=92 Identities=13% Similarity=0.049 Sum_probs=70.1
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCC--------CCCceEEeecccccCCCCCCCceeEEEecc
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNP--------RLEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~--------~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
+..+|||||||.|..+ ++..+..+++..|. +.+++.++ .+..+..+|+ ...+.+ .+|+|++..
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~---~~~~~~--~~D~~~~~~ 252 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDF---FKDPLP--EADLYILAR 252 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCT---TTSCCC--CCSEEEEES
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCcc---ccCCCC--CceEEEeee
Confidence 4578999999988654 44458889999997 66765443 2345667776 333443 479999999
Q ss_pred hhhccCCHH--HHHHHHHHcccCCcEEEEEE
Q 023470 166 SVQYLQQPE--KVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 166 ~l~~~~~~~--~~l~~~~r~LkpgG~li~~~ 194 (282)
+||+.+|.+ .+|++++++|+|||++++..
T Consensus 253 vlh~~~d~~~~~iL~~~~~al~pgg~lli~e 283 (353)
T 4a6d_A 253 VLHDWADGKCSHLLERIYHTCKPGGGILVIE 283 (353)
T ss_dssp SGGGSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred ecccCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 999998764 58999999999999988763
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-10 Score=99.76 Aligned_cols=94 Identities=13% Similarity=0.049 Sum_probs=67.5
Q ss_pred hCCCCCeEEEeCCc------ccc-hhhhhcC-CCeEEEEcCCHHHHHhCCCCCce-EEeecccccCCCCCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMSS------WVS-HLPQEVS-YKRVVGHGLNAQELAKNPRLEYF-IVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGcG------~~~-~~~~~~~-~~~v~giD~s~~~l~~~~~~~~~-~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++++.+|||+||| .|. .++...+ ..+|+|+|+|+. + ....+ ..+|+ .+++++ ++||+|+|+
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v----~~v~~~i~gD~---~~~~~~-~~fD~Vvsn 130 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-V----SDADSTLIGDC---ATVHTA-NKWDLIISD 130 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-B----CSSSEEEESCG---GGCCCS-SCEEEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-C----CCCEEEEECcc---ccCCcc-CcccEEEEc
Confidence 35678899999993 343 3333344 689999999998 2 24567 88888 555553 689999997
Q ss_pred chhhc-----------cCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 165 VSVQY-----------LQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 165 ~~l~~-----------~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
...++ ....+.+++++.|+|||||.|++.+..
T Consensus 131 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~ 173 (290)
T 2xyq_A 131 MYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE 173 (290)
T ss_dssp CCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred CCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 54221 112347999999999999999997654
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-10 Score=104.30 Aligned_cols=102 Identities=17% Similarity=0.156 Sum_probs=74.9
Q ss_pred CCCCCeEEEeCCcccchhhhh---c-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE---V-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~---~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
..++.+|||+|||+|...... . +..+|+|+|+|+.|++.++. ...+...|+ .+++.+.++||+|+
T Consensus 201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~---~~~~~~~~~~D~Ii 277 (354)
T 3tma_A 201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADA---RHLPRFFPEVDRIL 277 (354)
T ss_dssp CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCG---GGGGGTCCCCSEEE
T ss_pred CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCCh---hhCccccCCCCEEE
Confidence 356789999999988654322 2 45899999999999876542 346777777 66776667799999
Q ss_pred ecchhhc--c------CCHHHHHHHHHHcccCCcEEEEEEcCchh
Q 023470 163 CAVSVQY--L------QQPEKVFAEVFRVLKPGGVFIVSFSNRMF 199 (282)
Q Consensus 163 ~~~~l~~--~------~~~~~~l~~~~r~LkpgG~li~~~~~~~~ 199 (282)
++--... . .....+++++.++|||||.+++.++++..
T Consensus 278 ~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~ 322 (354)
T 3tma_A 278 ANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPAL 322 (354)
T ss_dssp ECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHH
T ss_pred ECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHH
Confidence 9632211 1 12256899999999999999999887544
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-10 Score=97.28 Aligned_cols=91 Identities=9% Similarity=0.150 Sum_probs=64.8
Q ss_pred CCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHhCCC----------CCceEEeecccccCCC-CCCCceeEEE
Q 023470 98 GSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAKNPR----------LEYFIVKDLNQDQKLE-FDHCSFDAVV 162 (282)
Q Consensus 98 ~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~~~~----------~~~~~~~d~~~~~~l~-~~~~s~D~v~ 162 (282)
+.+|||||||+|.. ++... ++.+|+++|+|+++++.++. +..+..+|.. +.++ +++++||+|+
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~--~~l~~~~~~~fD~V~ 134 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPL--DVMSRLANDSYQLVF 134 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHH--HHGGGSCTTCEEEEE
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHH--HHHHHhcCCCcCeEE
Confidence 34899999997753 33433 47899999999999866542 1234444442 1222 3368999999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+... ..+...+++++.++|||||.+++.
T Consensus 135 ~d~~---~~~~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 135 GQVS---PMDLKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp ECCC---TTTHHHHHHHHHHHEEEEEEEEET
T ss_pred EcCc---HHHHHHHHHHHHHHcCCCcEEEEe
Confidence 8754 345677999999999999999985
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.07 E-value=7.4e-11 Score=98.28 Aligned_cols=93 Identities=11% Similarity=0.144 Sum_probs=66.3
Q ss_pred CCCeEEEeCCcccchh---hhhcC-CCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCC-CC----CCce
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVS-YKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLE-FD----HCSF 158 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~-~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~-~~----~~s~ 158 (282)
++.+|||+|||+|... +...+ +.+|+|+|+|+.+++.++. ...+..+|... .++ +. .++|
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKD--TLAELIHAGQAWQY 141 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH--HHHHHHTTTCTTCE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHH--HHHHhhhccCCCCc
Confidence 5679999999987643 33333 7899999999998865542 23455555521 111 11 1789
Q ss_pred eEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 159 DAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 159 D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
|+|++... ..+...+++++.++|||||.+++..
T Consensus 142 D~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~ 174 (225)
T 3tr6_A 142 DLIYIDAD---KANTDLYYEESLKLLREGGLIAVDN 174 (225)
T ss_dssp EEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 99997653 3456789999999999999999874
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-10 Score=101.88 Aligned_cols=98 Identities=16% Similarity=0.242 Sum_probs=67.1
Q ss_pred CCCCCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
..++.+|||+|||.|.. ++... +..+|+|+|+|+.+++.++. +..+...|. ..++..+++||+|+
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~---~~~~~~~~~fD~Il 192 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSS---LHIGELNVEFDKIL 192 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCG---GGGGGGCCCEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECCh---hhcccccccCCEEE
Confidence 45788999999998764 33333 35799999999998865442 224445555 44443457899999
Q ss_pred ec------chhhccCCH----------------HHHHHHHHHcccCCcEEEEEEc
Q 023470 163 CA------VSVQYLQQP----------------EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~------~~l~~~~~~----------------~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+. .++++.++. ..+++++.++|||||++++++.
T Consensus 193 ~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 193 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 247 (315)
T ss_dssp EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred EeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 84 234333321 4789999999999999998753
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-10 Score=98.70 Aligned_cols=101 Identities=12% Similarity=0.070 Sum_probs=72.2
Q ss_pred HHhhCCCCCeEEEeCCcccchhh---hhcCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCceeE
Q 023470 91 YRQMLRPGSEVLDLMSSWVSHLP---QEVSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSFDA 160 (282)
Q Consensus 91 ~~~~~~~~~~vLDiGcG~~~~~~---~~~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~D~ 160 (282)
+...+++..+|||||||+|-... ...+..+|+|+|+++.|++.++.+ ..+.+.|. ....+.+.||+
T Consensus 126 i~~~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~----~~~~p~~~~Dv 201 (281)
T 3lcv_B 126 LFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADL----LEDRLDEPADV 201 (281)
T ss_dssp HGGGSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCT----TTSCCCSCCSE
T ss_pred HHhccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeee----cccCCCCCcch
Confidence 34455667899999999875433 334788999999999999755422 24555554 23335678999
Q ss_pred EEecchhhccCCHHH-HHHHHHHcccCCcEEEEEEcC
Q 023470 161 VVCAVSVQYLQQPEK-VFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 161 v~~~~~l~~~~~~~~-~l~~~~r~LkpgG~li~~~~~ 196 (282)
|+++-+++|+++.++ ..-++...|+|+|.++ ++|.
T Consensus 202 aL~lkti~~Le~q~kg~g~~ll~aL~~~~vvV-Sfp~ 237 (281)
T 3lcv_B 202 TLLLKTLPCLETQQRGSGWEVIDIVNSPNIVV-TFPT 237 (281)
T ss_dssp EEETTCHHHHHHHSTTHHHHHHHHSSCSEEEE-EEEC
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhCCCCEEE-eccc
Confidence 999999999975543 3339999999988765 4444
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-10 Score=97.81 Aligned_cols=95 Identities=15% Similarity=0.071 Sum_probs=70.2
Q ss_pred CCCCeEEEeCCcccchhhhhcCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 96 RPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
.+..+|||||||+|.......+..+++|+|+++.|++.++.. ..+.++|. ...+. .++||+|++.-++|
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~---~~~~~-~~~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDV---LCAPP-AEAGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCT---TTSCC-CCBCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeec---ccCCC-CCCcchHHHHHHHH
Confidence 567899999999887655544889999999999999765432 24566676 44444 45899999999999
Q ss_pred ccCCHHH-HHHHHHHcccCCcEEEEEEc
Q 023470 169 YLQQPEK-VFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 169 ~~~~~~~-~l~~~~r~LkpgG~li~~~~ 195 (282)
|+.+.+. ...++...|+++|. ++++|
T Consensus 180 ~LE~q~~~~~~~ll~aL~~~~v-vVsfP 206 (253)
T 3frh_A 180 LLEREQAGSAMALLQSLNTPRM-AVSFP 206 (253)
T ss_dssp HHHHHSTTHHHHHHHHCBCSEE-EEEEE
T ss_pred HhhhhchhhHHHHHHHhcCCCE-EEEcC
Confidence 9964433 44488889999855 55656
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.07 E-value=5.3e-11 Score=105.46 Aligned_cols=98 Identities=12% Similarity=0.064 Sum_probs=68.4
Q ss_pred CCCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCCC----------CceEEeecccccCCCC----CCCceeE
Q 023470 96 RPGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPRL----------EYFIVKDLNQDQKLEF----DHCSFDA 160 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~~----------~~~~~~d~~~~~~l~~----~~~s~D~ 160 (282)
.++.+|||+|||+|...... ..+.+|+|+|+|+.|++.++.+ ..+...|+ .++.. .+++||+
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~---~~~l~~~~~~~~~fD~ 228 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDA---MKFIQREERRGSTYDI 228 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCH---HHHHHHHHHHTCCBSE
T ss_pred CCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcH---HHHHHHHHhcCCCceE
Confidence 46779999999988654332 2455999999999998765422 34555554 22211 1468999
Q ss_pred EEec---c-------hhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 161 VVCA---V-------SVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 161 v~~~---~-------~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
|++. + ++++..+...+++++.++|||||.++++...
T Consensus 229 Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 229 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred EEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 9994 2 2334456678999999999999998887654
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-10 Score=100.57 Aligned_cols=93 Identities=11% Similarity=0.155 Sum_probs=66.7
Q ss_pred CCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCce---eEE
Q 023470 97 PGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSF---DAV 161 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~---D~v 161 (282)
++.+|||+|||+|.. ++.. +..+|+|+|+|+++++.++.+ ..+..+|.. . +++ ++| |+|
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~---~-~~~-~~f~~~D~I 196 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFL---E-PFK-EKFASIEMI 196 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTT---G-GGG-GGTTTCCEE
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcch---h-hcc-cccCCCCEE
Confidence 567999999998864 3444 688999999999998765422 345666652 2 222 478 999
Q ss_pred Eec------------chhhccC--------CHHHHHHHHH-HcccCCcEEEEEEcC
Q 023470 162 VCA------------VSVQYLQ--------QPEKVFAEVF-RVLKPGGVFIVSFSN 196 (282)
Q Consensus 162 ~~~------------~~l~~~~--------~~~~~l~~~~-r~LkpgG~li~~~~~ 196 (282)
+++ .+. |.+ +...+++++. +.|||||.+++++..
T Consensus 197 vsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~ 251 (284)
T 1nv8_A 197 LSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 251 (284)
T ss_dssp EECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred EEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 997 122 221 2236899999 999999999998654
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-10 Score=99.62 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=69.0
Q ss_pred CCCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCC------------CCceEEeecccccCC-CCCCCce
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPR------------LEYFIVKDLNQDQKL-EFDHCSF 158 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~------------~~~~~~~d~~~~~~l-~~~~~s~ 158 (282)
.+++.+|||||||.|....... +..+|+++|+|+.+++.+++ ...+..+|... .+ ..++++|
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~--~l~~~~~~~f 195 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVA--FLKNAAEGSY 195 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHH--HHHTSCTTCE
T ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHH--HHHhccCCCc
Confidence 3466899999999886544332 46799999999999876542 22445555421 11 2345789
Q ss_pred eEEEecch--hhccCC--HHHHHHHHHHcccCCcEEEEEEcC
Q 023470 159 DAVVCAVS--VQYLQQ--PEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 159 D~v~~~~~--l~~~~~--~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
|+|++... +++..+ ...+++++.++|||||.+++...+
T Consensus 196 DlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 237 (334)
T 1xj5_A 196 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 237 (334)
T ss_dssp EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred cEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 99999654 221111 367999999999999999997443
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-10 Score=98.62 Aligned_cols=96 Identities=17% Similarity=0.092 Sum_probs=72.0
Q ss_pred HhhCCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeE
Q 023470 92 RQMLRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDA 160 (282)
Q Consensus 92 ~~~~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~ 160 (282)
...+.++.+|||+|||+|... +...+..+|+|+|+|+.+++.++. +..+..+|. .+++. .++||+
T Consensus 114 ~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~---~~~~~-~~~~D~ 189 (272)
T 3a27_A 114 AFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADN---RDVEL-KDVADR 189 (272)
T ss_dssp HTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCG---GGCCC-TTCEEE
T ss_pred HHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECCh---HHcCc-cCCceE
Confidence 345678899999999987643 333346699999999999865542 234666666 44433 578999
Q ss_pred EEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 161 VVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 161 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|++.... +...++.++.++|||||.++++..
T Consensus 190 Vi~d~p~----~~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 190 VIMGYVH----KTHKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp EEECCCS----SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred EEECCcc----cHHHHHHHHHHHcCCCCEEEEEEc
Confidence 9998653 667799999999999999998754
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.05 E-value=8e-10 Score=94.65 Aligned_cols=90 Identities=17% Similarity=0.055 Sum_probs=66.3
Q ss_pred CCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCCC------------ceEEeecccccCCCCCCCceeEE
Q 023470 96 RPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRLE------------YFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~------------~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
+.+.+|||||||.|...... .+ .+|+++|+++++++.+++.. .+..+|. .... ++||+|
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~---~~~~---~~fD~I 143 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLL---DLDI---KKYDLI 143 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGG---GSCC---CCEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechH---HHHH---hhCCEE
Confidence 45679999999987644322 15 89999999999998877542 2223333 2222 789999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
++. ..++..+++++.++|||||.+++...++
T Consensus 144 i~d-----~~dp~~~~~~~~~~L~pgG~lv~~~~~~ 174 (262)
T 2cmg_A 144 FCL-----QEPDIHRIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_dssp EES-----SCCCHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred EEC-----CCChHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 986 3467779999999999999999876544
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.9e-10 Score=93.78 Aligned_cols=95 Identities=16% Similarity=0.094 Sum_probs=66.2
Q ss_pred CCCeEEEeCCcccchh---hhhcC-CCeEEEEcCCHHHHHhCCC---------CCceEEeecccc-cCCCCC-CCceeEE
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVS-YKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQD-QKLEFD-HCSFDAV 161 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~-~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~-~~l~~~-~~s~D~v 161 (282)
++.+|||||||+|... +...+ +.+|+|+|+++.+++.++. ...+..+|.... ..++.. .++||+|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 6789999999988643 33334 7899999999998865432 234555655210 011111 2679999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
++.... .+...+++++.++|||||.+++..
T Consensus 138 ~~d~~~---~~~~~~l~~~~~~L~pgG~lv~~~ 167 (223)
T 3duw_A 138 FIDADK---QNNPAYFEWALKLSRPGTVIIGDN 167 (223)
T ss_dssp EECSCG---GGHHHHHHHHHHTCCTTCEEEEES
T ss_pred EEcCCc---HHHHHHHHHHHHhcCCCcEEEEeC
Confidence 987653 345789999999999999888873
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.5e-10 Score=96.22 Aligned_cols=95 Identities=12% Similarity=0.212 Sum_probs=66.9
Q ss_pred CCCeEEEeCCcccchh---hhhcC-CCeEEEEcCCHHHHHhCCCC---------CceEEeecccc-cCC-----------
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVS-YKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQD-QKL----------- 151 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~-~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~-~~l----------- 151 (282)
++.+|||||||+|... +...+ +.+|+++|+++.+++.++.. ..+..+|.... ..+
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 6789999999987643 33333 68999999999988665422 24445554210 001
Q ss_pred CCCC--CceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 152 EFDH--CSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 152 ~~~~--~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
.+++ ++||+|++..... +...+++++.++|||||++++..
T Consensus 140 ~f~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDADKE---NYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TTCCSTTCEEEEEECSCGG---GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cccCCCCCcCEEEEeCCHH---HHHHHHHHHHHHcCCCeEEEEEc
Confidence 1333 7899999986543 44689999999999999999874
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.05 E-value=8.8e-11 Score=99.46 Aligned_cols=92 Identities=11% Similarity=0.108 Sum_probs=66.1
Q ss_pred CCCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCC-----CCCce
Q 023470 97 PGSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEF-----DHCSF 158 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~-----~~~s~ 158 (282)
++.+|||||||+|.. ++... ++.+|+|+|+|+++++.++. +..+..+|.. +.++. .+++|
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~--~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPAL--DTLHSLLNEGGEHQF 137 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHH--HHHHHHHHHHCSSCE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH--HHHHHHhhccCCCCE
Confidence 567999999998753 33333 37899999999988765432 2345566652 11221 14789
Q ss_pred eEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 159 DAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 159 D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|+|++... ..+...+++++.++|||||.+++.
T Consensus 138 D~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d 169 (242)
T 3r3h_A 138 DFIFIDAD---KTNYLNYYELALKLVTPKGLIAID 169 (242)
T ss_dssp EEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEE
Confidence 99998764 345677999999999999999986
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.3e-10 Score=99.61 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=70.2
Q ss_pred CCCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCC-------------CCceEEeecccccCCCCCCCce
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPR-------------LEYFIVKDLNQDQKLEFDHCSF 158 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~-------------~~~~~~~d~~~~~~l~~~~~s~ 158 (282)
.+++.+|||||||.|....... +..+|+++|+++.+++.+++ ...+..+|.. ..++..+++|
T Consensus 75 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~--~~l~~~~~~f 152 (314)
T 1uir_A 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDAR--AYLERTEERY 152 (314)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHH--HHHHHCCCCE
T ss_pred CCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHH--HHHHhcCCCc
Confidence 3566899999999886544332 46799999999999865432 2244555542 1133346789
Q ss_pred eEEEecchhhc---cC--C--HHHHHHHHHHcccCCcEEEEEEcC
Q 023470 159 DAVVCAVSVQY---LQ--Q--PEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 159 D~v~~~~~l~~---~~--~--~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
|+|++....++ .+ . ...+++++.++|||||.+++...+
T Consensus 153 D~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 197 (314)
T 1uir_A 153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (314)
T ss_dssp EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred cEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence 99999866544 11 1 367999999999999999987543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-10 Score=98.82 Aligned_cols=101 Identities=12% Similarity=0.136 Sum_probs=69.5
Q ss_pred CCCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCC------------CCceEEeecccccCCCCCCCcee
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPR------------LEYFIVKDLNQDQKLEFDHCSFD 159 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~------------~~~~~~~d~~~~~~l~~~~~s~D 159 (282)
.+++.+|||||||.|....... +..+|+++|+++.+++.+++ ...+.++|.. ..++..+++||
T Consensus 76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~--~~l~~~~~~fD 153 (283)
T 2i7c_A 76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDAS--KFLENVTNTYD 153 (283)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHH--HHHHHCCSCEE
T ss_pred CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChH--HHHHhCCCCce
Confidence 3466899999999886544332 46799999999999875432 1234555542 11222257899
Q ss_pred EEEecchhhccC--CH--HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 160 AVVCAVSVQYLQ--QP--EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 160 ~v~~~~~l~~~~--~~--~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+|++....++.+ .. ..+++++.++|||||.+++...++
T Consensus 154 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~ 195 (283)
T 2i7c_A 154 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESL 195 (283)
T ss_dssp EEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCc
Confidence 999965433222 22 689999999999999999986543
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.02 E-value=5e-10 Score=98.05 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=67.5
Q ss_pred CeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCC--CCCCCceeEEEecc
Q 023470 99 SEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKL--EFDHCSFDAVVCAV 165 (282)
Q Consensus 99 ~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l--~~~~~s~D~v~~~~ 165 (282)
.+|||||||.|... ++..+..+|+++|+++.+++.+++. ..+.++|. ..+ .+++++||+|++..
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da---~~~l~~~~~~~fDvIi~D~ 167 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDA---RMVAESFTPASRDVIIRDV 167 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCH---HHHHHTCCTTCEEEEEECC
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcH---HHHHhhccCCCCCEEEECC
Confidence 48999999987543 3334678999999999999766432 24555655 222 23467899999974
Q ss_pred hhhcc-C---CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 166 SVQYL-Q---QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 166 ~l~~~-~---~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
..+.. + ...+++++++++|||||.+++...+
T Consensus 168 ~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 168 FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence 33321 1 1267999999999999999987653
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.8e-10 Score=98.33 Aligned_cols=101 Identities=12% Similarity=0.160 Sum_probs=68.8
Q ss_pred CCCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCCC------------CceEEeecccccCCCCCCCcee
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPRL------------EYFIVKDLNQDQKLEFDHCSFD 159 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~~------------~~~~~~d~~~~~~l~~~~~s~D 159 (282)
.+++.+|||||||.|....... +..+|+++|+|+++++.++++ ..+..+|.. ..++..+++||
T Consensus 114 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~--~~l~~~~~~fD 191 (321)
T 2pt6_A 114 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDAS--KFLENVTNTYD 191 (321)
T ss_dssp SSSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHH--HHHHHCCSCEE
T ss_pred CCCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHH--HHHhhcCCCce
Confidence 3466899999999886543332 468999999999998754321 234455542 11222357899
Q ss_pred EEEecchhhc--cCCH--HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 160 AVVCAVSVQY--LQQP--EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 160 ~v~~~~~l~~--~~~~--~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+|++...-.. .... ..+++++.++|||||.+++...++
T Consensus 192 vIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~ 233 (321)
T 2pt6_A 192 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESL 233 (321)
T ss_dssp EEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred EEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 9998753111 1111 689999999999999999986554
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.02 E-value=9.9e-10 Score=89.78 Aligned_cols=90 Identities=11% Similarity=0.104 Sum_probs=63.0
Q ss_pred CCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCC---CCceEEeecccccCCCCCCCceeEEEecchhhc
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPR---LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~---~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~ 169 (282)
..++.+|||+|||+|...... .+..+|+|+|+|+.|++.++. ...+..+|+ ..++ ++||+|+++..++|
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~---~~~~---~~~D~v~~~~p~~~ 122 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADV---SEIS---GKYDTWIMNPPFGS 122 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCG---GGCC---CCEEEEEECCCC--
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcH---HHCC---CCeeEEEECCCchh
Confidence 346789999999988654322 244589999999999976654 356777777 4553 68999999999988
Q ss_pred cCC--HHHHHHHHHHcccCCcEEEEE
Q 023470 170 LQQ--PEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 170 ~~~--~~~~l~~~~r~LkpgG~li~~ 193 (282)
..+ ...+++++.++| |+ +++.
T Consensus 123 ~~~~~~~~~l~~~~~~~--g~-~~~~ 145 (200)
T 1ne2_A 123 VVKHSDRAFIDKAFETS--MW-IYSI 145 (200)
T ss_dssp -----CHHHHHHHHHHE--EE-EEEE
T ss_pred ccCchhHHHHHHHHHhc--Cc-EEEE
Confidence 864 346899999998 44 4444
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.8e-10 Score=96.71 Aligned_cols=100 Identities=13% Similarity=0.133 Sum_probs=69.3
Q ss_pred CCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCC------------CCceEEeecccccCCCCCCCceeE
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPR------------LEYFIVKDLNQDQKLEFDHCSFDA 160 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~------------~~~~~~~d~~~~~~l~~~~~s~D~ 160 (282)
+.+.+|||||||.|....... +..+|+++|+++++++.+++ ...+..+|.. .-++..+++||+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~--~~l~~~~~~fD~ 151 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGF--MHIAKSENQYDV 151 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSH--HHHHTCCSCEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHH--HHHhhCCCCeeE
Confidence 456899999999886543332 45799999999999875542 1244555542 113333578999
Q ss_pred EEecchhhccCC----HHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 161 VVCAVSVQYLQQ----PEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 161 v~~~~~l~~~~~----~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
|++....++.+. ..++++++.++|||||.+++...++
T Consensus 152 Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~ 192 (275)
T 1iy9_A 152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP 192 (275)
T ss_dssp EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 999754322211 2679999999999999999986543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.9e-10 Score=97.70 Aligned_cols=100 Identities=12% Similarity=0.137 Sum_probs=67.3
Q ss_pred CCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCC------------CCceEEeecccccCCCCCCCceeE
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPR------------LEYFIVKDLNQDQKLEFDHCSFDA 160 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~------------~~~~~~~d~~~~~~l~~~~~s~D~ 160 (282)
+.+.+|||||||.|....... +..+|+++|+|+.+++.+++ ...+..+|.. ..++..+++||+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~--~~l~~~~~~fD~ 166 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGA--EYVRKFKNEFDV 166 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHH--HHGGGCSSCEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHH--HHHhhCCCCceE
Confidence 456899999999886543332 46799999999999865442 2234455542 113334578999
Q ss_pred EEecchhhccC-----CHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 161 VVCAVSVQYLQ-----QPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 161 v~~~~~l~~~~-----~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
|++...-.++. ....+++++.++|||||.+++...++
T Consensus 167 Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~ 208 (296)
T 1inl_A 167 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP 208 (296)
T ss_dssp EEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCc
Confidence 99864322121 22679999999999999999986554
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.8e-10 Score=99.98 Aligned_cols=100 Identities=13% Similarity=0.052 Sum_probs=65.3
Q ss_pred CCCCCeEEEeCCcccchhhhh---cCCCeEEEEcCCHHHHHhCCCC------------CceEEeecccccCCCCCCCcee
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE---VSYKRVVGHGLNAQELAKNPRL------------EYFIVKDLNQDQKLEFDHCSFD 159 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~---~~~~~v~giD~s~~~l~~~~~~------------~~~~~~d~~~~~~l~~~~~s~D 159 (282)
.+++.+|||||||.|...... .+..+|+++|+|+.+++.+++. ..+..+|.. ..++..+++||
T Consensus 106 ~~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~--~~l~~~~~~fD 183 (314)
T 2b2c_A 106 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGF--EFLKNHKNEFD 183 (314)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHH--HHHHHCTTCEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHH--HHHHhcCCCce
Confidence 345689999999988654333 2468999999999998765421 233444431 11223467899
Q ss_pred EEEecchhhccCCH----HHHHHHHHHcccCCcEEEEEEcC
Q 023470 160 AVVCAVSVQYLQQP----EKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 160 ~v~~~~~l~~~~~~----~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+|++...-+..+.. ..+++++.++|||||.+++...+
T Consensus 184 ~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~ 224 (314)
T 2b2c_A 184 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 224 (314)
T ss_dssp EEEECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred EEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCC
Confidence 99986542221111 57899999999999999998643
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3.4e-10 Score=97.52 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=67.9
Q ss_pred CCCCCeEEEeCCcccch---hhhhcCC-CeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCC----CCCce
Q 023470 95 LRPGSEVLDLMSSWVSH---LPQEVSY-KRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEF----DHCSF 158 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~---~~~~~~~-~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~----~~~s~ 158 (282)
..++.+|||+|||.|.. ++...++ .+|+|+|+|+.+++.++. +..+...|. ..++. .+++|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~---~~~~~~~~~~~~~f 157 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADM---RKYKDYLLKNEIFF 157 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCH---HHHHHHHHHTTCCE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCCh---HhcchhhhhccccC
Confidence 45788999999998764 3333344 899999999998865432 234445554 33332 25789
Q ss_pred eEEEec------chhh------------ccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 159 DAVVCA------VSVQ------------YLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 159 D~v~~~------~~l~------------~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|+|++. .+++ .......+++++.++|||||++++++.
T Consensus 158 D~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc 212 (274)
T 3ajd_A 158 DKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC 212 (274)
T ss_dssp EEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred CEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 999987 2221 224557899999999999999999864
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=4.4e-10 Score=95.39 Aligned_cols=93 Identities=11% Similarity=0.111 Sum_probs=66.8
Q ss_pred CCCeEEEeCCcccch---hhhhcC-CCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCC-C-----CCCc
Q 023470 97 PGSEVLDLMSSWVSH---LPQEVS-YKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLE-F-----DHCS 157 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~~-~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~-~-----~~~s 157 (282)
++.+|||||||+|.. ++...+ +.+|+++|+|+++++.++.+ ..+..+|.. +.++ + ++++
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~--~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPAL--PVLDEMIKDEKNHGS 156 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHH--HHHHHHHHSGGGTTC
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHH--HHHHHHHhccCCCCC
Confidence 567999999998753 334334 78999999999988665421 234555542 1122 1 1578
Q ss_pred eeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
||+|++... ..+...+++++.++|||||.+++..
T Consensus 157 fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 157 YDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp BSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 999998754 3467889999999999999999863
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.6e-10 Score=93.74 Aligned_cols=95 Identities=9% Similarity=0.140 Sum_probs=67.0
Q ss_pred CCCeEEEeCCcccchh---hhhcC-CCeEEEEcCCHHHHHhCCCC---------CceEEeecccc-cCCCCCC--CceeE
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVS-YKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQD-QKLEFDH--CSFDA 160 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~-~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~-~~l~~~~--~s~D~ 160 (282)
++.+|||||||+|... +...+ +.+|+++|+|+.+++.++.. ..+..++.... ..++..+ ++||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 5679999999988643 33333 67999999999998765422 23455554210 1233333 78999
Q ss_pred EEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 161 VVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 161 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
|++... ..+...+++++.++|||||.+++..
T Consensus 152 V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 152 IFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp EEECSC---GGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred EEECCC---HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 998754 2456789999999999999999873
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-09 Score=95.72 Aligned_cols=99 Identities=17% Similarity=0.104 Sum_probs=66.9
Q ss_pred CCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCCC------------CceEEeecccccCCCCCCCceeE
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPRL------------EYFIVKDLNQDQKLEFDHCSFDA 160 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~~------------~~~~~~d~~~~~~l~~~~~s~D~ 160 (282)
+++.+|||||||+|....... +..+|+++|+++++++.+++. ..+..+|.. ..++..+++||+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~--~~l~~~~~~fD~ 171 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGF--EFMKQNQDAFDV 171 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHH--HHHHTCSSCEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHH--HHHhhCCCCceE
Confidence 466899999999886544332 457999999999998765432 234455542 113334678999
Q ss_pred EEecchhhccC----CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 161 VVCAVSVQYLQ----QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 161 v~~~~~l~~~~----~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
|++....+..+ ....+++++.++|||||.+++...+
T Consensus 172 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 172 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 99965432221 1246899999999999999988644
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-10 Score=97.40 Aligned_cols=96 Identities=6% Similarity=0.001 Sum_probs=60.1
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCC-CCC---CCceeE
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKL-EFD---HCSFDA 160 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l-~~~---~~s~D~ 160 (282)
++.+|||+|||+|... +...+..+|+|+|+|+.|++.++.+ ..+..+|.... -+ +++ +++||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTL-LMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCS-STTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhh-hhhhhhcccCCcccE
Confidence 4679999999988643 3333568999999999998765421 34566665210 01 333 368999
Q ss_pred EEecchhhccC---------------CHHHHHHHHHHcccCCcEEEEE
Q 023470 161 VVCAVSVQYLQ---------------QPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 161 v~~~~~l~~~~---------------~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|+++-..++.. ....++.+++|+|||||.+.+.
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 99984433322 1124678899999999998654
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-09 Score=99.94 Aligned_cols=98 Identities=17% Similarity=0.277 Sum_probs=69.3
Q ss_pred CCCCCeEEEeCCcccch---hhhhcCC-CeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCC--CCCCceeE
Q 023470 95 LRPGSEVLDLMSSWVSH---LPQEVSY-KRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLE--FDHCSFDA 160 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~---~~~~~~~-~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~--~~~~s~D~ 160 (282)
..++.+|||+|||.|.. ++...++ .+|+|+|+|+.+++.++. +..+...|. ..++ +++++||+
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~---~~~~~~~~~~~fD~ 333 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDA---RKAPEIIGEEVADK 333 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCT---TCCSSSSCSSCEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcCh---hhcchhhccCCCCE
Confidence 45788999999997753 3443444 799999999998854332 233444554 4443 55578999
Q ss_pred EEe------cchhhccCCH----------------HHHHHHHHHcccCCcEEEEEEc
Q 023470 161 VVC------AVSVQYLQQP----------------EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 161 v~~------~~~l~~~~~~----------------~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|++ ..++++.++. ..+++++.++|||||.+++++.
T Consensus 334 Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tc 390 (450)
T 2yxl_A 334 VLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC 390 (450)
T ss_dssp EEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred EEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 996 2445554443 5689999999999999998764
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.95 E-value=7.4e-10 Score=92.61 Aligned_cols=100 Identities=7% Similarity=-0.077 Sum_probs=69.1
Q ss_pred HHHhhCCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCc
Q 023470 90 LYRQMLRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCS 157 (282)
Q Consensus 90 ~~~~~~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s 157 (282)
.+...++++.+|||||||+|... +...+..+|+|+|+++.+++.++.+ ..+..+|. .+...+++.
T Consensus 14 ~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~---l~~~~~~~~ 90 (230)
T 3lec_A 14 KVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANG---LSAFEEADN 90 (230)
T ss_dssp HHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG---GGGCCGGGC
T ss_pred HHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hhccccccc
Confidence 34567788899999999988633 2322456899999999998765422 34555665 333333347
Q ss_pred eeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
||+|+.....-. -...++.+..+.|+++|+|+++-
T Consensus 91 ~D~IviaGmGg~--lI~~IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 91 IDTITICGMGGR--LIADILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp CCEEEEEEECHH--HHHHHHHHTGGGGTTCCEEEEEE
T ss_pred cCEEEEeCCchH--HHHHHHHHHHHHhCcCCEEEEEC
Confidence 999886543221 23568888999999999999884
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2e-09 Score=93.09 Aligned_cols=99 Identities=11% Similarity=0.149 Sum_probs=66.5
Q ss_pred CCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCCC------------------CceEEeecccccCCCCC
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPRL------------------EYFIVKDLNQDQKLEFD 154 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~------------------~~~~~~d~~~~~~l~~~ 154 (282)
.+++.+|||||||.|....... +..+|+++|+++.+++.+++. ..+..+|.. ..++.
T Consensus 73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~--~~l~~- 149 (281)
T 1mjf_A 73 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGF--EFIKN- 149 (281)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHH--HHHHH-
T ss_pred CCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchH--HHhcc-
Confidence 3567899999999886443322 567999999999998654321 233444431 11222
Q ss_pred CCceeEEEecchhhccC--C--HHHHHHHHHHcccCCcEEEEEEcC
Q 023470 155 HCSFDAVVCAVSVQYLQ--Q--PEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 155 ~~s~D~v~~~~~l~~~~--~--~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+++||+|++....+..+ . ...++++++++|||||.+++...+
T Consensus 150 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 195 (281)
T 1mjf_A 150 NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 195 (281)
T ss_dssp CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 57899999875432211 1 267899999999999999987544
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=9.8e-10 Score=91.64 Aligned_cols=96 Identities=19% Similarity=0.178 Sum_probs=66.2
Q ss_pred CCCCeEEEeCCcccchh---hhhcC-CCeEEEEcCCHHHHHhCCC---------CCceEEeecccc-cCCCCC--CCcee
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVS-YKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQD-QKLEFD--HCSFD 159 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~-~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~-~~l~~~--~~s~D 159 (282)
.++.+|||+|||+|... +...+ ..+|+++|+|+.+++.++. ...+..+|.... ..++.. .++||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 36789999999987643 33333 6899999999998865542 234555554210 111111 16899
Q ss_pred EEEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 160 AVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 160 ~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
+|++... ..+...+++++.++|||||.+++..
T Consensus 148 ~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 148 VAVVDAD---KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEEECSC---STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCC---HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 9999654 3456789999999999999999863
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.92 E-value=8.9e-10 Score=99.66 Aligned_cols=105 Identities=17% Similarity=0.151 Sum_probs=68.8
Q ss_pred HHHhhCCCCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCceeEE
Q 023470 90 LYRQMLRPGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 90 ~~~~~~~~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
.+...+.++.+|||+|||+|...... ..+.+|+|+|+|+.|++.++.+ ..+...|+.. .++...+.||+|
T Consensus 207 ~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~--~l~~~~~~fD~I 284 (393)
T 4dmg_A 207 LFEAMVRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALP--TLRGLEGPFHHV 284 (393)
T ss_dssp HHHTTCCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHH--HHHTCCCCEEEE
T ss_pred HHHHHhcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHH--HHHHhcCCCCEE
Confidence 34445556899999999988654332 2456799999999999765532 1344555421 121112349999
Q ss_pred Eecchh---------hccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 162 VCAVSV---------QYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 162 ~~~~~l---------~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++.--- ....+...++..+.++|||||.+++....
T Consensus 285 i~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 285 LLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp EECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 986321 12234467899999999999999866543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.9e-09 Score=94.90 Aligned_cols=95 Identities=12% Similarity=-0.046 Sum_probs=68.5
Q ss_pred CCCeEEEeCCcccchhhhh---cCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccC-CCC-CCCceeEEEe
Q 023470 97 PGSEVLDLMSSWVSHLPQE---VSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQK-LEF-DHCSFDAVVC 163 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~---~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~-l~~-~~~s~D~v~~ 163 (282)
++.+|||+| |+|...... .+..+|+|+|+|+.|++.+++ +..+..+|+ .. ++. .+++||+|++
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~---~~~l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDL---RKPLPDYALHKFDTFIT 247 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCT---TSCCCTTTSSCBSEEEE
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChh---hhhchhhccCCccEEEE
Confidence 578999999 988654322 234799999999999876542 234566666 44 553 3568999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcE-EEEEEcC
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGV-FIVSFSN 196 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~-li~~~~~ 196 (282)
+..+++. ....+++++.++|||||+ +++++.+
T Consensus 248 ~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 248 DPPETLE-AIRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp CCCSSHH-HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred CCCCchH-HHHHHHHHHHHHcccCCeEEEEEEec
Confidence 8654433 257899999999999994 4777654
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.4e-09 Score=96.26 Aligned_cols=108 Identities=19% Similarity=0.139 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCC---------CCceEEeeccccc
Q 023470 82 GFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQ 149 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~ 149 (282)
.....+.... ..++.+|||+|||+|....... ...+|+|+|+|+.|++.++. ...+..+|+ .
T Consensus 205 ~la~~l~~~~---~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~---~ 278 (373)
T 3tm4_A 205 SIANAMIELA---ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDA---T 278 (373)
T ss_dssp HHHHHHHHHH---TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCG---G
T ss_pred HHHHHHHHhh---cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh---h
Confidence 3444444433 5678899999999887543332 23489999999999976542 235677777 6
Q ss_pred CCCCCCCceeEEEecchhhc-------cCCH-HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 150 KLEFDHCSFDAVVCAVSVQY-------LQQP-EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 150 ~l~~~~~s~D~v~~~~~l~~-------~~~~-~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+++.++++||+|+++-.... +.+. ..+++++.++| ||.+++.++++
T Consensus 279 ~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~ 332 (373)
T 3tm4_A 279 QLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEK 332 (373)
T ss_dssp GGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCH
T ss_pred hCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCH
Confidence 77777789999999743221 1122 56888999988 66666655554
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-09 Score=91.59 Aligned_cols=100 Identities=8% Similarity=-0.065 Sum_probs=68.6
Q ss_pred HHHhhCCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCc
Q 023470 90 LYRQMLRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCS 157 (282)
Q Consensus 90 ~~~~~~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s 157 (282)
.+...++++.+|||||||+|... +...+..+|+|+|+++.+++.|+.+ ..+..+|. .+...++.+
T Consensus 14 ~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~---l~~~~~~~~ 90 (244)
T 3gnl_A 14 KVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNG---LAVIEKKDA 90 (244)
T ss_dssp HHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG---GGGCCGGGC
T ss_pred HHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecch---hhccCcccc
Confidence 35667888999999999987643 3322456899999999998765532 24455555 333222335
Q ss_pred eeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
||+|++....- .-...++.+..+.|+++|+|+++-
T Consensus 91 ~D~IviagmGg--~lI~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 91 IDTIVIAGMGG--TLIRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp CCEEEEEEECH--HHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred ccEEEEeCCch--HHHHHHHHHHHHHhCCCCEEEEEc
Confidence 99988754321 113567889999999999999883
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-09 Score=89.62 Aligned_cols=100 Identities=11% Similarity=-0.006 Sum_probs=68.4
Q ss_pred HHHhhCCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCc
Q 023470 90 LYRQMLRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCS 157 (282)
Q Consensus 90 ~~~~~~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s 157 (282)
.+...++++.+|||||||+|... +...+..+|+|+|+++.+++.++.+ ..+..+|.. ..++. ...
T Consensus 8 ~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l--~~l~~-~~~ 84 (225)
T 3kr9_A 8 LVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGL--AAFEE-TDQ 84 (225)
T ss_dssp HHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGG--GGCCG-GGC
T ss_pred HHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchh--hhccc-CcC
Confidence 34567778899999999988642 3323467899999999998765422 234555542 23332 126
Q ss_pred eeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
||+|+....--. -...++.++...|+|+|+++++-
T Consensus 85 ~D~IviaG~Gg~--~i~~Il~~~~~~L~~~~~lVlq~ 119 (225)
T 3kr9_A 85 VSVITIAGMGGR--LIARILEEGLGKLANVERLILQP 119 (225)
T ss_dssp CCEEEEEEECHH--HHHHHHHHTGGGCTTCCEEEEEE
T ss_pred CCEEEEcCCChH--HHHHHHHHHHHHhCCCCEEEEEC
Confidence 999887643211 14678999999999999999873
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.89 E-value=6.9e-10 Score=96.20 Aligned_cols=92 Identities=23% Similarity=0.214 Sum_probs=61.0
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
+.++.+|||||||+|....... .+.+|+|+|+|+.|++.++. ...+..+|+ ..++++ +||+|+++
T Consensus 26 ~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~---~~~~~~--~fD~vv~n 100 (285)
T 1zq9_A 26 LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV---LKTDLP--FFDTCVAN 100 (285)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCT---TTSCCC--CCSEEEEE
T ss_pred CCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcce---ecccch--hhcEEEEe
Confidence 3467899999999887544332 35799999999999865432 234556666 455553 79999997
Q ss_pred c-----------hhhccCCHHHHH----HHH--HHcccCCcEEE
Q 023470 165 V-----------SVQYLQQPEKVF----AEV--FRVLKPGGVFI 191 (282)
Q Consensus 165 ~-----------~l~~~~~~~~~l----~~~--~r~LkpgG~li 191 (282)
. +++|.++...++ +|+ +++|||||.++
T Consensus 101 lpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 101 LPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred cCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 4 344444433211 344 47999999763
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-09 Score=99.23 Aligned_cols=98 Identities=15% Similarity=0.203 Sum_probs=69.5
Q ss_pred CCCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCC-------CCceEEeecccccCCC--CCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQDQKLE--FDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~~~~l~--~~~~s~D~v~ 162 (282)
..++.+|||+|||.|.. ++...+..+|+|+|+|+.+++.++. ...+...|. ..++ +++++||+|+
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~---~~~~~~~~~~~fD~Vl 320 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG---RYPSQWCGEQQFDRIL 320 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT---TCTHHHHTTCCEEEEE
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCch---hhchhhcccCCCCEEE
Confidence 35788999999998754 3444455899999999987754321 234555565 4443 4557899999
Q ss_pred ec------chhhccCCH----------------HHHHHHHHHcccCCcEEEEEEc
Q 023470 163 CA------VSVQYLQQP----------------EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~------~~l~~~~~~----------------~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+. .++++.++. ..+++++.++|||||++++++.
T Consensus 321 ~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc 375 (429)
T 1sqg_A 321 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375 (429)
T ss_dssp EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred EeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 62 345555543 4689999999999999998863
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-09 Score=91.53 Aligned_cols=93 Identities=11% Similarity=0.119 Sum_probs=65.9
Q ss_pred CCCeEEEeCCcccch---hhhhcC-CCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCC-C-----CCCc
Q 023470 97 PGSEVLDLMSSWVSH---LPQEVS-YKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLE-F-----DHCS 157 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~~-~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~-~-----~~~s 157 (282)
++.+|||||||+|.. ++...+ +.+|+++|+|+.+++.++.+ ..+..+|.. +.++ + ++++
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~--~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAM--LALDNLLQGQESEGS 147 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH--HHHHHHHHSTTCTTC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH--HHHHHHHhccCCCCC
Confidence 567999999998753 344334 78999999999988665421 234555542 1111 1 2578
Q ss_pred eeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
||+|++... ..+...+++++.++|||||.+++..
T Consensus 148 fD~I~~d~~---~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 148 YDFGFVDAD---KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 999998743 2355789999999999999998863
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=9.2e-10 Score=99.44 Aligned_cols=102 Identities=16% Similarity=0.184 Sum_probs=67.4
Q ss_pred CCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC----------CCceEEeecccc-cCCCCCCCceeEEE
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR----------LEYFIVKDLNQD-QKLEFDHCSFDAVV 162 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~----------~~~~~~~d~~~~-~~l~~~~~s~D~v~ 162 (282)
.++.+|||+|||+|....... +..+|+|+|+|+.|++.++. +..+..+|+... ..+.....+||+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 578899999999886543322 34589999999999865432 334566665210 01111245899999
Q ss_pred ecchh-----hcc----CCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 163 CAVSV-----QYL----QQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 163 ~~~~l-----~~~----~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+.--. .+. .+..++++++.++|||||.++++....
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 85211 223 334457888899999999999987544
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.86 E-value=3e-09 Score=94.61 Aligned_cols=97 Identities=15% Similarity=0.187 Sum_probs=70.4
Q ss_pred CCCeEEEeCCcccchhhhhc---CC-----CeEEEEcCCHHHHHhCCC-------CCceEEeecccccCCCCCCCceeEE
Q 023470 97 PGSEVLDLMSSWVSHLPQEV---SY-----KRVVGHGLNAQELAKNPR-------LEYFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~---~~-----~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
++.+|||+|||+|..+.... +. .+++|+|+++.+++.++. ...+..+|. .. +...++||+|
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~---l~-~~~~~~fD~I 205 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDG---LA-NLLVDPVDVV 205 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCT---TS-CCCCCCEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCC---CC-ccccCCccEE
Confidence 56789999999987654332 21 789999999998866543 234555554 22 2345789999
Q ss_pred EecchhhccCCHH------------------HHHHHHHHcccCCcEEEEEEcCc
Q 023470 162 VCAVSVQYLQQPE------------------KVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 162 ~~~~~l~~~~~~~------------------~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+++--+.+++..+ .+++++.+.|||||++++.+|+.
T Consensus 206 i~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~ 259 (344)
T 2f8l_A 206 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 259 (344)
T ss_dssp EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred EECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence 9997665554322 47999999999999999998865
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6.3e-09 Score=94.72 Aligned_cols=96 Identities=22% Similarity=0.268 Sum_probs=69.2
Q ss_pred CCCeEEEeCCcccchhhhhc----CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEec--ch-hhc
Q 023470 97 PGSEVLDLMSSWVSHLPQEV----SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCA--VS-VQY 169 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~----~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~--~~-l~~ 169 (282)
++.+|||+|||+|..+.... +..+++|+|+++.+++.+ ....+..+|+ .... .+++||+|+++ +. ...
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-~~~~~~~~D~---~~~~-~~~~fD~Ii~NPPy~~~~~ 113 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-PWAEGILADF---LLWE-PGEAFDLILGNPPYGIVGE 113 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-TTEEEEESCG---GGCC-CSSCEEEEEECCCCCCBSC
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-CCCcEEeCCh---hhcC-ccCCCCEEEECcCccCccc
Confidence 46799999999987654432 568999999999999877 3445667776 3333 24689999996 11 111
Q ss_pred -------cCC-------------------HHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 170 -------LQQ-------------------PEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 170 -------~~~-------------------~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+.+ ...+++.+.++|||||++++.+|+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~ 167 (421)
T 2ih2_A 114 ASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 167 (421)
T ss_dssp TTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred ccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence 211 1246899999999999999998864
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-09 Score=98.68 Aligned_cols=104 Identities=19% Similarity=0.215 Sum_probs=71.7
Q ss_pred HHhhCCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCC-C---CCC
Q 023470 91 YRQMLRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKL-E---FDH 155 (282)
Q Consensus 91 ~~~~~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l-~---~~~ 155 (282)
+.....++.+|||+|||+|....... +..+|+|+|+|+.+++.++. +..+..+|+ .++ + ..+
T Consensus 211 ~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~---~~~~~~~~~~~ 287 (396)
T 2as0_A 211 LEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSA---FEEMEKLQKKG 287 (396)
T ss_dssp HGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH---HHHHHHHHHTT
T ss_pred HHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCH---HHHHHHHHhhC
Confidence 33344478899999999886533322 35699999999999865542 234555555 222 1 125
Q ss_pred CceeEEEecc---------hhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 156 CSFDAVVCAV---------SVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 156 ~s~D~v~~~~---------~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
++||+|++.- +.++..+...++.++.++|||||.++++..+.
T Consensus 288 ~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 288 EKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp CCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 6899999952 33344566779999999999999998886554
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.84 E-value=6.3e-11 Score=100.45 Aligned_cols=95 Identities=13% Similarity=0.103 Sum_probs=65.1
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCC------ceEEeecccccCCCCCC-CceeEEEecc-
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLE------YFIVKDLNQDQKLEFDH-CSFDAVVCAV- 165 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~------~~~~~d~~~~~~l~~~~-~s~D~v~~~~- 165 (282)
+.++.+|||+|||+|....... .+.+|+|+|+|+.|++.++.+. .+..+|+ .++++++ ++| .|+++.
T Consensus 27 ~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~---~~~~~~~~~~f-~vv~n~P 102 (245)
T 1yub_A 27 LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDI---LQFQFPNKQRY-KIVGNIP 102 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCC---TTTTCCCSSEE-EEEEECC
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEECCh---hhcCcccCCCc-EEEEeCC
Confidence 3467899999999886433322 3489999999999998776542 3445555 5666653 688 666651
Q ss_pred ----------hhhccCCHHHHH----HHHHHcccCCcEEEEE
Q 023470 166 ----------SVQYLQQPEKVF----AEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ----------~l~~~~~~~~~l----~~~~r~LkpgG~li~~ 193 (282)
.++|..+....+ +.+.|+|||||.+.+.
T Consensus 103 y~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 103 YHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp SSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred ccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 233444445566 7799999999997654
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.5e-08 Score=81.73 Aligned_cols=106 Identities=13% Similarity=0.089 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhh-CCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCC-------CCceEEeecccccCCC
Q 023470 83 FISTLTNLYRQM-LRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQDQKLE 152 (282)
Q Consensus 83 ~~~~~~~~~~~~-~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~~~~l~ 152 (282)
....+...+... ..++.+|||+|||+|...... .+..+|+|+|+|+.+++.++. ...+..+|+ .+++
T Consensus 34 ~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~ 110 (207)
T 1wy7_A 34 AASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDV---SEFN 110 (207)
T ss_dssp HHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCG---GGCC
T ss_pred HHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECch---HHcC
Confidence 334444333322 346789999999988654332 234589999999999876543 234556665 4443
Q ss_pred CCCCceeEEEecchhhccC--CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 153 FDHCSFDAVVCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 153 ~~~~s~D~v~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++||+|+++..+++.. ....+++++.++| ||.+++.+++
T Consensus 111 ---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~~ 151 (207)
T 1wy7_A 111 ---SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIHLAK 151 (207)
T ss_dssp ---CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEEECC
T ss_pred ---CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEEeCC
Confidence 4899999997766653 3456899999998 5555444333
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.1e-09 Score=97.02 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=66.1
Q ss_pred CCCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCC-CCCceeEEEe
Q 023470 97 PGSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEF-DHCSFDAVVC 163 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~-~~~s~D~v~~ 163 (282)
++.+|||+|||.|.. ++... +...|+|+|+|+.+++.++. +..+...|. ..++. .+++||+|++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~---~~~~~~~~~~fD~Il~ 193 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDG---RVFGAAVPEMFDAILL 193 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCS---TTHHHHSTTCEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCH---HHhhhhccccCCEEEE
Confidence 788999999997753 44443 35799999999998865432 223344444 44432 3578999998
Q ss_pred c------chhhccCC----------------HHHHHHHHHHcccCCcEEEEEEc
Q 023470 164 A------VSVQYLQQ----------------PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 164 ~------~~l~~~~~----------------~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
. .++.+.++ ...+++++.++|||||++++++.
T Consensus 194 D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc 247 (479)
T 2frx_A 194 DAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC 247 (479)
T ss_dssp ECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 2 23333332 23589999999999999998754
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-09 Score=105.29 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=71.0
Q ss_pred CCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCC----------CCceEEeecccccCCCCCCCceeEEEe
Q 023470 96 RPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPR----------LEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~----------~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.++.+|||+|||+|...... .+..+|+++|+|+.+++.++. ...+..+|+. .-++...++||+|++
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~--~~l~~~~~~fD~Ii~ 615 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCL--AWLREANEQFDLIFI 615 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHH--HHHHHCCCCEEEEEE
T ss_pred cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH--HHHHhcCCCccEEEE
Confidence 36889999999988643322 244579999999999865542 2345566652 113334578999998
Q ss_pred cc-----------hhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 164 AV-----------SVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 164 ~~-----------~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.- ++++..+...++.++.++|||||.++++...
T Consensus 616 DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 616 DPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 52 3344456677999999999999999998764
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-09 Score=99.97 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=67.1
Q ss_pred CCCCCeEEEeCCcccch---hhhhcC-CCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCC-CCCCceeEEE
Q 023470 95 LRPGSEVLDLMSSWVSH---LPQEVS-YKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLE-FDHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~---~~~~~~-~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~-~~~~s~D~v~ 162 (282)
..++.+|||+|||.|.. ++...+ ...|+|+|+|+.+++.++.+ ..+...|. ..++ ..+++||+|+
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da---~~l~~~~~~~FD~Il 175 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPP---RALAEAFGTYFHRVL 175 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCH---HHHHHHHCSCEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCH---HHhhhhccccCCEEE
Confidence 45788999999998753 444433 47999999999998655432 23334443 3333 2357899999
Q ss_pred ec------chhhccCCH----------------HHHHHHHHHcccCCcEEEEEEc
Q 023470 163 CA------VSVQYLQQP----------------EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~------~~l~~~~~~----------------~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+. .++.+-++. ..+++++.++|||||+|++++.
T Consensus 176 ~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC 230 (464)
T 3m6w_A 176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC 230 (464)
T ss_dssp EECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred ECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 52 233333332 5689999999999999998753
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-09 Score=98.77 Aligned_cols=98 Identities=18% Similarity=0.212 Sum_probs=68.3
Q ss_pred CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCC-C---CCCCceeEEEe
Q 023470 97 PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKL-E---FDHCSFDAVVC 163 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l-~---~~~~s~D~v~~ 163 (282)
++.+|||+|||+|....... ...+|+|+|+|+.+++.++.+ ..+..+|. .++ + ..+++||+|++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~---~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANA---FDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCH---HHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCH---HHHHHHHHhcCCCeeEEEE
Confidence 67899999999876432221 267999999999998665422 34556665 222 1 12568999999
Q ss_pred cc---------hhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 164 AV---------SVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 164 ~~---------~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.- +..+..+...++.++.++|||||.++++....
T Consensus 286 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 286 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 52 22333455679999999999999999986543
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-08 Score=90.31 Aligned_cols=96 Identities=11% Similarity=0.137 Sum_probs=68.7
Q ss_pred HHHhhCCCCCeEEEeCCcccchhhhhcCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeE
Q 023470 90 LYRQMLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDA 160 (282)
Q Consensus 90 ~~~~~~~~~~~vLDiGcG~~~~~~~~~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~ 160 (282)
.+...+.++.+|||+|||+|.......+..+|+|+|+|+.+++.++. ...+..+|. ..+. ++||+
T Consensus 188 ~i~~~~~~~~~VLDlg~G~G~~~l~a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~---~~~~---~~fD~ 261 (336)
T 2yx1_A 188 RIMKKVSLNDVVVDMFAGVGPFSIACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDV---REVD---VKGNR 261 (336)
T ss_dssp HHHHHCCTTCEEEETTCTTSHHHHHTTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCG---GGCC---CCEEE
T ss_pred HHHHhcCCCCEEEEccCccCHHHHhccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCh---HHhc---CCCcE
Confidence 34455668899999999988654333367899999999998865432 234556665 3333 78999
Q ss_pred EEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 161 VVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 161 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|++.--- ....++.++.++|+|||.+++...
T Consensus 262 Vi~dpP~----~~~~~l~~~~~~L~~gG~l~~~~~ 292 (336)
T 2yx1_A 262 VIMNLPK----FAHKFIDKALDIVEEGGVIHYYTI 292 (336)
T ss_dssp EEECCTT----TGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred EEECCcH----hHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9996311 123789999999999999887643
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.75 E-value=7e-09 Score=93.99 Aligned_cols=102 Identities=14% Similarity=0.127 Sum_probs=69.2
Q ss_pred CCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC----------CCceEEeecccc-cCCCCCCCceeEEE
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR----------LEYFIVKDLNQD-QKLEFDHCSFDAVV 162 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~----------~~~~~~~d~~~~-~~l~~~~~s~D~v~ 162 (282)
.++.+|||+|||+|....... +..+|+|+|+|+.+++.++. +..+..+|+... ..+...+++||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 477899999999886533322 35699999999999865432 234555555210 01111246899999
Q ss_pred ecc---------hhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 163 CAV---------SVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 163 ~~~---------~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+.- ..++..+...++.++.++|||||.++++....
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 972 23333566789999999999999999886543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-08 Score=87.43 Aligned_cols=97 Identities=8% Similarity=0.049 Sum_probs=67.9
Q ss_pred HHHHhhCCCCCeEEEeCCcccchhh--hhcCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCc
Q 023470 89 NLYRQMLRPGSEVLDLMSSWVSHLP--QEVSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCS 157 (282)
Q Consensus 89 ~~~~~~~~~~~~vLDiGcG~~~~~~--~~~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s 157 (282)
..+.+.++++.+|||+|||+|.+.. ...+..+|+|+|+|+.+++.++.+ ..+..+|. ..+. ..+.
T Consensus 117 ~ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~---~~~~-~~~~ 192 (278)
T 3k6r_A 117 VRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN---RDFP-GENI 192 (278)
T ss_dssp HHHHHHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT---TTCC-CCSC
T ss_pred HHHHHhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcH---HHhc-cccC
Confidence 4556677899999999999886432 223567999999999987654321 23344444 4444 3578
Q ss_pred eeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
||.|++..- +....++..+.++|||||.+.+.
T Consensus 193 ~D~Vi~~~p----~~~~~~l~~a~~~lk~gG~ih~~ 224 (278)
T 3k6r_A 193 ADRILMGYV----VRTHEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp EEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEE
T ss_pred CCEEEECCC----CcHHHHHHHHHHHcCCCCEEEEE
Confidence 999998632 23456788899999999998654
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.5e-08 Score=86.16 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=65.9
Q ss_pred CCeEEEeCCcccchh-----------hhh-------cCCCeEEEEcCCHHHH-------HhCCC----------C--Cce
Q 023470 98 GSEVLDLMSSWVSHL-----------PQE-------VSYKRVVGHGLNAQEL-------AKNPR----------L--EYF 140 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~-----------~~~-------~~~~~v~giD~s~~~l-------~~~~~----------~--~~~ 140 (282)
..+|+|+|||+|.-. ... .+..+|+.-|+..... ...++ . ..+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 478999999865311 111 1457888888876442 22111 0 112
Q ss_pred EEeecccc-cCCCCCCCceeEEEecchhhccC--------------------------------------CHHHHHHHHH
Q 023470 141 IVKDLNQD-QKLEFDHCSFDAVVCAVSVQYLQ--------------------------------------QPEKVFAEVF 181 (282)
Q Consensus 141 ~~~d~~~~-~~l~~~~~s~D~v~~~~~l~~~~--------------------------------------~~~~~l~~~~ 181 (282)
.+..+... ..-.++++++|+|+|+.+|||+. |...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222221 23457899999999999999997 3334688999
Q ss_pred HcccCCcEEEEEEcCc
Q 023470 182 RVLKPGGVFIVSFSNR 197 (282)
Q Consensus 182 r~LkpgG~li~~~~~~ 197 (282)
+.|+|||++++++..+
T Consensus 213 ~eL~pGG~mvl~~~gr 228 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGR 228 (374)
T ss_dssp HHEEEEEEEEEEEEEC
T ss_pred HHhCCCCEEEEEEecC
Confidence 9999999999998754
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-08 Score=93.61 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=64.5
Q ss_pred CCCCCeEEEeCCcccc---hhhhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCC-CCCCceeEE
Q 023470 95 LRPGSEVLDLMSSWVS---HLPQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLE-FDHCSFDAV 161 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~---~~~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~-~~~~s~D~v 161 (282)
..++.+|||+|||.|. .++... ....|+|+|+|+.+++.++.+ ..+...|. ..++ ..+++||+|
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da---~~l~~~~~~~FD~I 179 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAP---AELVPHFSGFFDRI 179 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCH---HHHHHHHTTCEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCH---HHhhhhccccCCEE
Confidence 4578899999998775 344433 357999999999988654322 22333343 3332 235789999
Q ss_pred Eec------chhhccCC----------------HHHHHHHHHHcccCCcEEEEEEc
Q 023470 162 VCA------VSVQYLQQ----------------PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 162 ~~~------~~l~~~~~----------------~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
++. .++.+-++ ...+++++.++|||||+|+.++.
T Consensus 180 l~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 235 (456)
T 3m4x_A 180 VVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC 235 (456)
T ss_dssp EEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred EECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 974 12222111 12589999999999999998754
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.62 E-value=2.3e-08 Score=92.00 Aligned_cols=97 Identities=14% Similarity=0.092 Sum_probs=68.0
Q ss_pred CCCeEEEeCCcccchhhhhc----------------CCCeEEEEcCCHHHHHhCC------C----CCceEEeecccccC
Q 023470 97 PGSEVLDLMSSWVSHLPQEV----------------SYKRVVGHGLNAQELAKNP------R----LEYFIVKDLNQDQK 150 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~----------------~~~~v~giD~s~~~l~~~~------~----~~~~~~~d~~~~~~ 150 (282)
++.+|||.|||+|..+.... ...+++|+|+++.+++.++ + ...+..+|. ..
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~---l~ 247 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDS---LE 247 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCT---TT
T ss_pred CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCC---CC
Confidence 46789999999987654322 2368999999998876543 1 234556665 33
Q ss_pred CCCCCCceeEEEecchhhccCC-----------------HHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 151 LEFDHCSFDAVVCAVSVQYLQQ-----------------PEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 151 l~~~~~s~D~v~~~~~l~~~~~-----------------~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.+. ..+||+|+++--+.+... ...+++++.+.|||||++++.+|+.
T Consensus 248 ~~~-~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~ 310 (445)
T 2okc_A 248 KEP-STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN 310 (445)
T ss_dssp SCC-SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred Ccc-cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCc
Confidence 333 248999999944333211 1368999999999999999988764
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=8.6e-08 Score=87.54 Aligned_cols=100 Identities=20% Similarity=0.148 Sum_probs=65.8
Q ss_pred HHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCc
Q 023470 86 TLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCS 157 (282)
Q Consensus 86 ~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s 157 (282)
.+...+.. +.++.+|||+|||+|....... .+.+|+|+|+|+.|++.++.+ ..+..+|+ .++. + .+
T Consensus 280 ~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~---~~~~-~-~~ 353 (425)
T 2jjq_A 280 NLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASD---REVS-V-KG 353 (425)
T ss_dssp HHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCT---TTCC-C-TT
T ss_pred HHHHHhhc-cCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECCh---HHcC-c-cC
Confidence 33333333 5678899999999886543322 467999999999999766532 34566666 4443 2 28
Q ss_pred eeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
||+|++.---.. -.+.+++.+. .|+|||.++++.
T Consensus 354 fD~Vv~dPPr~g--~~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 354 FDTVIVDPPRAG--LHPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp CSEEEECCCTTC--SCHHHHHHHH-HHCCSEEEEEES
T ss_pred CCEEEEcCCccc--hHHHHHHHHH-hcCCCcEEEEEC
Confidence 999999643111 1134555554 599999999985
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-07 Score=82.33 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCC
Q 023470 82 GFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLE 152 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~ 152 (282)
...+.+.+.+ .+.++.+|||+|||+|....... .+.+|+|+|+|+.|++.++. +..+..+|+ ..++
T Consensus 29 ~i~~~i~~~~--~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~---~~~~ 103 (299)
T 2h1r_A 29 GILDKIIYAA--KIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDA---IKTV 103 (299)
T ss_dssp HHHHHHHHHH--CCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----C---CSSC
T ss_pred HHHHHHHHhc--CCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECch---hhCC
Confidence 4444444433 24567899999999887554433 46799999999999865432 234556665 4555
Q ss_pred CCCCceeEEEecchhhccCCH-HHHH---------------HHHHHcccCCc
Q 023470 153 FDHCSFDAVVCAVSVQYLQQP-EKVF---------------AEVFRVLKPGG 188 (282)
Q Consensus 153 ~~~~s~D~v~~~~~l~~~~~~-~~~l---------------~~~~r~LkpgG 188 (282)
+ .+||+|+++...+..... ..++ +.+.|+++++|
T Consensus 104 ~--~~~D~Vv~n~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 104 F--PKFDVCTANIPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp C--CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred c--ccCCEEEEcCCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 4 479999997554433211 1233 44778898888
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.59 E-value=4.8e-09 Score=88.83 Aligned_cols=91 Identities=12% Similarity=0.072 Sum_probs=57.8
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCCC-CceeEEEecc--
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFDH-CSFDAVVCAV-- 165 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~~-~s~D~v~~~~-- 165 (282)
.++.+|||||||+|....... .+.+|+|+|+|+.|++.++. ...+..+|+ ..+++++ ..| .|+++.
T Consensus 29 ~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~---~~~~~~~~~~~-~vv~nlPy 104 (244)
T 1qam_A 29 NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDI---LQFKFPKNQSY-KIFGNIPY 104 (244)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCG---GGCCCCSSCCC-EEEEECCG
T ss_pred CCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccCCCeEEEEChH---HhCCcccCCCe-EEEEeCCc
Confidence 467899999999987543332 35899999999999865432 235566666 5666653 456 455542
Q ss_pred ---------hhhccCCHHHHH----HHHHHcccCCcEE
Q 023470 166 ---------SVQYLQQPEKVF----AEVFRVLKPGGVF 190 (282)
Q Consensus 166 ---------~l~~~~~~~~~l----~~~~r~LkpgG~l 190 (282)
.++|......++ +.+.|+|+|+|.+
T Consensus 105 ~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l 142 (244)
T 1qam_A 105 NISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSL 142 (244)
T ss_dssp GGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHH
T ss_pred ccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcch
Confidence 223333333334 4478888888865
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-07 Score=79.14 Aligned_cols=109 Identities=15% Similarity=0.179 Sum_probs=68.9
Q ss_pred HHHHHHHHHh-hCCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCCC----ce--EEeecccccCCCC
Q 023470 84 ISTLTNLYRQ-MLRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRLE----YF--IVKDLNQDQKLEF 153 (282)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~~----~~--~~~d~~~~~~l~~ 153 (282)
...|.++..+ .+.++.+|||+|||.|... +...+...+.|+|++.++........ ++ ...++ +...+
T Consensus 60 A~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~---dv~~l 136 (277)
T 3evf_A 60 TAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKT---DIHRL 136 (277)
T ss_dssp HHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSC---CTTTS
T ss_pred HHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccc---eehhc
Confidence 3355555554 3567789999999766433 33234567889998855421111110 22 22232 33456
Q ss_pred CCCceeEEEecchhhccCC----H-H--HHHHHHHHcccCC-cEEEEEEcC
Q 023470 154 DHCSFDAVVCAVSVQYLQQ----P-E--KVFAEVFRVLKPG-GVFIVSFSN 196 (282)
Q Consensus 154 ~~~s~D~v~~~~~l~~~~~----~-~--~~l~~~~r~Lkpg-G~li~~~~~ 196 (282)
+++.||+|+|..+.+ ... . . .+++.+.++|||| |.|++.+-.
T Consensus 137 ~~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 137 EPVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 678999999998666 322 1 1 2578889999999 999999876
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-07 Score=83.84 Aligned_cols=101 Identities=12% Similarity=0.064 Sum_probs=64.7
Q ss_pred CCeEEEeCCcccchh---hhh-----------------cCCCeEEEEcCC-----------HHHHH---hCCC--CCceE
Q 023470 98 GSEVLDLMSSWVSHL---PQE-----------------VSYKRVVGHGLN-----------AQELA---KNPR--LEYFI 141 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~---~~~-----------------~~~~~v~giD~s-----------~~~l~---~~~~--~~~~~ 141 (282)
..+|+|+||+.|.-. ... .+..+|+..|+. +.+.+ ...+ ...+.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 578999999765311 000 134678888887 33221 1111 12233
Q ss_pred Eeecccc-cCCCCCCCceeEEEecchhhccCCHHH---------------------------------------HHHHHH
Q 023470 142 VKDLNQD-QKLEFDHCSFDAVVCAVSVQYLQQPEK---------------------------------------VFAEVF 181 (282)
Q Consensus 142 ~~d~~~~-~~l~~~~~s~D~v~~~~~l~~~~~~~~---------------------------------------~l~~~~ 181 (282)
+..+... ....++++++|+|+|+.+|||+.+.+. +|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 345678999999999999999865431 256668
Q ss_pred HcccCCcEEEEEEcCch
Q 023470 182 RVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 182 r~LkpgG~li~~~~~~~ 198 (282)
+.|+|||++++++..+.
T Consensus 213 ~eL~pGG~mvl~~~gr~ 229 (384)
T 2efj_A 213 EELISRGRMLLTFICKE 229 (384)
T ss_dssp HHEEEEEEEEEEEECCC
T ss_pred HHhccCCeEEEEEecCC
Confidence 99999999999987653
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=6.1e-07 Score=82.16 Aligned_cols=95 Identities=22% Similarity=0.260 Sum_probs=62.9
Q ss_pred CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccc-cCCCCCCCceeEEEecc
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQD-QKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~-~~l~~~~~s~D~v~~~~ 165 (282)
.++.+|||+|||+|....... ...+|+|+|+|+.+++.++. +..+..+|+... ..+++.+++||+|++.-
T Consensus 285 ~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dP 364 (433)
T 1uwv_A 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP 364 (433)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECC
T ss_pred CCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECC
Confidence 467899999999886543322 36799999999999876542 245667776321 12445667899999852
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
--.. ...+++.+.+ ++|++.++++.
T Consensus 365 Pr~g---~~~~~~~l~~-~~p~~ivyvsc 389 (433)
T 1uwv_A 365 ARAG---AAGVMQQIIK-LEPIRIVYVSC 389 (433)
T ss_dssp CTTC---CHHHHHHHHH-HCCSEEEEEES
T ss_pred CCcc---HHHHHHHHHh-cCCCeEEEEEC
Confidence 2111 1245555543 78999888874
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-06 Score=76.47 Aligned_cols=97 Identities=12% Similarity=0.104 Sum_probs=60.5
Q ss_pred CCCCCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCC---Ccee
Q 023470 95 LRPGSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDH---CSFD 159 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~---~s~D 159 (282)
..++.+|||+|||.|.. ++... +..+|+|+|+++.+++.++. +..+...|. ..++... ++||
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~---~~~~~~~~~~~~fD 176 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDF---LAVSPSDPRYHEVH 176 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCG---GGSCTTCGGGTTEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCh---HhcCccccccCCCC
Confidence 45788999999987753 33333 45799999999998764331 234555555 3443221 5799
Q ss_pred EEEec------chhhccC-----------CH-------HHHHHHHHHcccCCcEEEEEEc
Q 023470 160 AVVCA------VSVQYLQ-----------QP-------EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 160 ~v~~~------~~l~~~~-----------~~-------~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.|++. .++..-+ +. .++|+.+.++|+ ||+++.++-
T Consensus 177 ~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTC 235 (309)
T 2b9e_A 177 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTC 235 (309)
T ss_dssp EEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEES
T ss_pred EEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECC
Confidence 99973 2222211 21 236888888887 999887753
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=7e-07 Score=77.46 Aligned_cols=81 Identities=15% Similarity=0.100 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCC
Q 023470 82 GFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFD 154 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~ 154 (282)
...+.+.+.+ .+.++.+|||||||+|....... .+.+|+|+|++++|++.++. +..+..+|+ ..++++
T Consensus 37 ~i~~~Iv~~l--~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~---l~~~~~ 111 (295)
T 3gru_A 37 NFVNKAVESA--NLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDA---LKVDLN 111 (295)
T ss_dssp HHHHHHHHHT--TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCT---TTSCGG
T ss_pred HHHHHHHHhc--CCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccCCCeEEEECch---hhCCcc
Confidence 4444444332 24567899999999886543322 36799999999999876542 345677777 667777
Q ss_pred CCceeEEEecchh
Q 023470 155 HCSFDAVVCAVSV 167 (282)
Q Consensus 155 ~~s~D~v~~~~~l 167 (282)
+.+||+|+++...
T Consensus 112 ~~~fD~Iv~NlPy 124 (295)
T 3gru_A 112 KLDFNKVVANLPY 124 (295)
T ss_dssp GSCCSEEEEECCG
T ss_pred cCCccEEEEeCcc
Confidence 7789999988543
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.1e-07 Score=81.98 Aligned_cols=79 Identities=10% Similarity=0.138 Sum_probs=54.6
Q ss_pred CeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeEEEec--ch--hhccCCHHHHHHHHHHccc
Q 023470 119 KRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDAVVCA--VS--VQYLQQPEKVFAEVFRVLK 185 (282)
Q Consensus 119 ~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~v~~~--~~--l~~~~~~~~~l~~~~r~Lk 185 (282)
.+|+|+|+++.|++.++.+ ..+...|+ .+++.+ .+||+|+++ +. +....+...+.+++.++||
T Consensus 258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~---~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk 333 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDA---TQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFR 333 (385)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCG---GGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh---hhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHh
Confidence 5799999999999766532 34666776 555543 589999997 22 1112344557777777887
Q ss_pred C--CcEEEEEEcCchhHH
Q 023470 186 P--GGVFIVSFSNRMFYE 201 (282)
Q Consensus 186 p--gG~li~~~~~~~~~~ 201 (282)
+ ||.+++.+++..+..
T Consensus 334 ~~~g~~~~iit~~~~l~~ 351 (385)
T 3ldu_A 334 KLKNWSYYLITSYEDFEY 351 (385)
T ss_dssp TSBSCEEEEEESCTTHHH
T ss_pred hCCCCEEEEEECCHHHHH
Confidence 7 999888888765543
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.34 E-value=9.9e-07 Score=79.67 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=53.9
Q ss_pred CeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEec--chhhcc--CCHHHHHHHHHHccc
Q 023470 119 KRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCA--VSVQYL--QQPEKVFAEVFRVLK 185 (282)
Q Consensus 119 ~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~--~~l~~~--~~~~~~l~~~~r~Lk 185 (282)
.+|+|+|+|+.|++.++. ...+...|+ .+++.+ .+||+|+++ +....- .+...+.+++.++||
T Consensus 264 ~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~---~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk 339 (393)
T 3k0b_A 264 LNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQV---ADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYK 339 (393)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCG---GGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh---HhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHh
Confidence 469999999999976542 245677777 556554 589999999 543211 234456666777776
Q ss_pred C--CcEEEEEEcCchhH
Q 023470 186 P--GGVFIVSFSNRMFY 200 (282)
Q Consensus 186 p--gG~li~~~~~~~~~ 200 (282)
+ ||.+++.+++..+.
T Consensus 340 ~~~g~~~~iit~~~~l~ 356 (393)
T 3k0b_A 340 RMPTWSVYVLTSYELFE 356 (393)
T ss_dssp TCTTCEEEEEECCTTHH
T ss_pred cCCCCEEEEEECCHHHH
Confidence 6 99998888876543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.33 E-value=9e-07 Score=79.32 Aligned_cols=110 Identities=10% Similarity=0.074 Sum_probs=67.3
Q ss_pred HHHHHHHHhhCC-CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccc-cCCCC
Q 023470 85 STLTNLYRQMLR-PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQD-QKLEF 153 (282)
Q Consensus 85 ~~~~~~~~~~~~-~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~-~~l~~ 153 (282)
..+...+.+.+. .+.+|||+|||+|....... ...+|+|+|+|+.+++.++. +..+..+|.... ..+.-
T Consensus 200 ~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~ 279 (369)
T 3bt7_A 200 IQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG 279 (369)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSS
T ss_pred HHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhh
Confidence 344444444443 35789999999886543322 45799999999999875542 234555554210 00110
Q ss_pred ------------CCCceeEEEecchhhccCCHHH--HHHHHHHcccCCcEEEEEEcCchhHHH
Q 023470 154 ------------DHCSFDAVVCAVSVQYLQQPEK--VFAEVFRVLKPGGVFIVSFSNRMFYEK 202 (282)
Q Consensus 154 ------------~~~s~D~v~~~~~l~~~~~~~~--~l~~~~r~LkpgG~li~~~~~~~~~~~ 202 (282)
.+.+||+|++. |+. +..++.+.|+++|.++....++.....
T Consensus 280 ~~~~~~l~~~~~~~~~fD~Vv~d--------PPr~g~~~~~~~~l~~~g~ivyvsc~p~t~ar 334 (369)
T 3bt7_A 280 VREFNRLQGIDLKSYQCETIFVD--------PPRSGLDSETEKMVQAYPRILYISCNPETLCK 334 (369)
T ss_dssp CCCCTTGGGSCGGGCCEEEEEEC--------CCTTCCCHHHHHHHTTSSEEEEEESCHHHHHH
T ss_pred ccccccccccccccCCCCEEEEC--------cCccccHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 11379999874 222 356778888899998877666544443
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.32 E-value=3.4e-07 Score=81.39 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=65.7
Q ss_pred CCCeEEEeCCcccch----hhh---------------hcCCCeEEEEcCCHHHHHh---C-C-----CCCceEEeecccc
Q 023470 97 PGSEVLDLMSSWVSH----LPQ---------------EVSYKRVVGHGLNAQELAK---N-P-----RLEYFIVKDLNQD 148 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~----~~~---------------~~~~~~v~giD~s~~~l~~---~-~-----~~~~~~~~d~~~~ 148 (282)
...+|+|+||+.|.- +.. ..+..+|+..|+...+... . . ....|..+ +...
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~g-vpgS 129 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFING-VPGS 129 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEE-EESC
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEe-cchh
Confidence 346799999964421 111 1245688889988654421 1 0 11123333 3221
Q ss_pred -cCCCCCCCceeEEEecchhhccCCHH---------------------------------HHHHHHHHcccCCcEEEEEE
Q 023470 149 -QKLEFDHCSFDAVVCAVSVQYLQQPE---------------------------------KVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 149 -~~l~~~~~s~D~v~~~~~l~~~~~~~---------------------------------~~l~~~~r~LkpgG~li~~~ 194 (282)
....++++++|+|+|+.+|||+.+.+ .+|+..++.|+|||++++++
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 34568899999999999999986422 24888999999999999997
Q ss_pred cCc
Q 023470 195 SNR 197 (282)
Q Consensus 195 ~~~ 197 (282)
..+
T Consensus 210 ~gr 212 (359)
T 1m6e_X 210 LGR 212 (359)
T ss_dssp EEC
T ss_pred ecC
Confidence 654
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-06 Score=78.14 Aligned_cols=78 Identities=9% Similarity=0.123 Sum_probs=55.1
Q ss_pred CeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEec--chhhcc--CCHHHHHHHHHHccc
Q 023470 119 KRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCA--VSVQYL--QQPEKVFAEVFRVLK 185 (282)
Q Consensus 119 ~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~--~~l~~~--~~~~~~l~~~~r~Lk 185 (282)
.+|+|+|+|+.|++.++. ...+...|+ .+++.+ .+||+|+++ +....- .+...+.+++.+.||
T Consensus 257 ~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~---~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk 332 (384)
T 3ldg_A 257 LDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRL---QDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFA 332 (384)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCG---GGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh---HHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHh
Confidence 469999999999976542 235667777 556554 489999998 543321 234557777777887
Q ss_pred C--CcEEEEEEcCchhH
Q 023470 186 P--GGVFIVSFSNRMFY 200 (282)
Q Consensus 186 p--gG~li~~~~~~~~~ 200 (282)
+ ||.+++.+++..+.
T Consensus 333 ~~~g~~~~iit~~~~l~ 349 (384)
T 3ldg_A 333 PLKTWSQFILTNDTDFE 349 (384)
T ss_dssp TCTTSEEEEEESCTTHH
T ss_pred hCCCcEEEEEECCHHHH
Confidence 6 99999888876554
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.8e-06 Score=73.45 Aligned_cols=112 Identities=15% Similarity=0.106 Sum_probs=70.0
Q ss_pred HHHHHHHHHHh-hCCCCCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhCCC----CCceEEeecccccCCCCC
Q 023470 83 FISTLTNLYRQ-MLRPGSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKNPR----LEYFIVKDLNQDQKLEFD 154 (282)
Q Consensus 83 ~~~~~~~~~~~-~~~~~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~~~----~~~~~~~d~~~~~~l~~~ 154 (282)
-...|.++..+ .+.++.+|||+|||.|. +.+...+...|+|+|++..+...+.. ..++....... ....++
T Consensus 75 AAfKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~-dv~~l~ 153 (282)
T 3gcz_A 75 GSAKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKT-DVFNME 153 (282)
T ss_dssp HHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSC-CGGGSC
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCc-chhhcC
Confidence 33455555554 35678899999996554 34444466689999998765333321 11222111110 222355
Q ss_pred CCceeEEEecchhhccCCH-----H--HHHHHHHHcccCC--cEEEEEEcC
Q 023470 155 HCSFDAVVCAVSVQYLQQP-----E--KVFAEVFRVLKPG--GVFIVSFSN 196 (282)
Q Consensus 155 ~~s~D~v~~~~~l~~~~~~-----~--~~l~~~~r~Lkpg--G~li~~~~~ 196 (282)
.+.+|+|+|-.+.+ .... . .+|+-+.++|||| |.|++.+-.
T Consensus 154 ~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 154 VIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred CCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 68899999998766 3321 1 2577778999999 999998876
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.21 E-value=4.5e-07 Score=85.24 Aligned_cols=98 Identities=13% Similarity=0.072 Sum_probs=65.7
Q ss_pred CCCeEEEeCCcccchhhhhc----C-----------------CCeEEEEcCCHHHHHhCC------CC-------CceEE
Q 023470 97 PGSEVLDLMSSWVSHLPQEV----S-----------------YKRVVGHGLNAQELAKNP------RL-------EYFIV 142 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~----~-----------------~~~v~giD~s~~~l~~~~------~~-------~~~~~ 142 (282)
++.+|||.|||+|..+.... . ..+++|+|+++.+++.|+ +. ..+..
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~ 248 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 248 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence 46789999999987653322 1 247999999998876543 11 23455
Q ss_pred eecccccCCC-CCCCceeEEEec--chhhcc-----------CC-HHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 143 KDLNQDQKLE-FDHCSFDAVVCA--VSVQYL-----------QQ-PEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 143 ~d~~~~~~l~-~~~~s~D~v~~~--~~l~~~-----------~~-~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+|. ...+ ....+||+|+++ +..... .+ ...++..+.+.|||||++.+.+|+.
T Consensus 249 gDt---L~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~ 315 (541)
T 2ar0_A 249 GNT---LGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 315 (541)
T ss_dssp SCT---TSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred CCC---cccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence 554 2211 234689999998 322211 11 2358999999999999999998865
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.21 E-value=2.1e-06 Score=72.90 Aligned_cols=77 Identities=6% Similarity=0.012 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCC------CCCceEEeecccccCCCCC
Q 023470 82 GFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNP------RLEYFIVKDLNQDQKLEFD 154 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~------~~~~~~~~d~~~~~~l~~~ 154 (282)
...+.+.+.+ .+.++.+|||||||+|....... .+.+|+|+|++++|++.++ .+..+..+|+ ..++++
T Consensus 16 ~i~~~iv~~~--~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~---~~~~~~ 90 (255)
T 3tqs_A 16 FVLQKIVSAI--HPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDA---LQFDFS 90 (255)
T ss_dssp HHHHHHHHHH--CCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCT---TTCCGG
T ss_pred HHHHHHHHhc--CCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcch---HhCCHH
Confidence 4444444443 24567899999999987544433 4579999999999986543 2345667777 555543
Q ss_pred ----CCceeEEEec
Q 023470 155 ----HCSFDAVVCA 164 (282)
Q Consensus 155 ----~~s~D~v~~~ 164 (282)
+++|| |+++
T Consensus 91 ~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 91 SVKTDKPLR-VVGN 103 (255)
T ss_dssp GSCCSSCEE-EEEE
T ss_pred HhccCCCeE-EEec
Confidence 35688 6665
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.3e-05 Score=75.26 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHhhC--CCCCeEEEeCCcccchhhhhc------CCCeEEEEcCCHHHHHhCC------CC----CceEEe
Q 023470 82 GFISTLTNLYRQML--RPGSEVLDLMSSWVSHLPQEV------SYKRVVGHGLNAQELAKNP------RL----EYFIVK 143 (282)
Q Consensus 82 ~~~~~~~~~~~~~~--~~~~~vLDiGcG~~~~~~~~~------~~~~v~giD~s~~~l~~~~------~~----~~~~~~ 143 (282)
...+.+.+++.... .++.+|||.+||+|..+.... ...+++|+|+++.++..++ +. ..+..+
T Consensus 204 ~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~g 283 (542)
T 3lkd_A 204 PVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNA 283 (542)
T ss_dssp HHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEES
T ss_pred HHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEec
Confidence 34444555544322 256799999999987665432 3579999999998776553 11 134455
Q ss_pred ecccccCCC-CCCCceeEEEec--chhhc-----------------cC---C-HHHHHHHHHHccc-CCcEEEEEEcCch
Q 023470 144 DLNQDQKLE-FDHCSFDAVVCA--VSVQY-----------------LQ---Q-PEKVFAEVFRVLK-PGGVFIVSFSNRM 198 (282)
Q Consensus 144 d~~~~~~l~-~~~~s~D~v~~~--~~l~~-----------------~~---~-~~~~l~~~~r~Lk-pgG~li~~~~~~~ 198 (282)
|... .++| .....||+|+++ +...+ ++ + .-.++..+.+.|| |||++.+.+|+..
T Consensus 284 DtL~-~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~ 362 (542)
T 3lkd_A 284 DTLD-EDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGV 362 (542)
T ss_dssp CTTT-SCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHH
T ss_pred ceec-ccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchH
Confidence 5421 1112 346789999998 32211 10 1 1238999999999 9999999998763
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=3.1e-06 Score=72.54 Aligned_cols=80 Identities=6% Similarity=-0.007 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC-----CCceEEeecccccCCCCC
Q 023470 81 GGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR-----LEYFIVKDLNQDQKLEFD 154 (282)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~-----~~~~~~~d~~~~~~l~~~ 154 (282)
....+.+.+.+ .+.++ +|||||||+|....... .+.+|+|+|++++|++.++. +..+..+|+ ..++++
T Consensus 33 ~~i~~~Iv~~~--~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~---l~~~~~ 106 (271)
T 3fut_A 33 EAHLRRIVEAA--RPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDA---LLYPWE 106 (271)
T ss_dssp HHHHHHHHHHH--CCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTTSSEEEEESCG---GGSCGG
T ss_pred HHHHHHHHHhc--CCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCCEEEEECCh---hhCChh
Confidence 34555554443 24567 99999999987543332 45799999999999865432 335667777 556554
Q ss_pred CC-ceeEEEecch
Q 023470 155 HC-SFDAVVCAVS 166 (282)
Q Consensus 155 ~~-s~D~v~~~~~ 166 (282)
+. .+|.|+++.-
T Consensus 107 ~~~~~~~iv~NlP 119 (271)
T 3fut_A 107 EVPQGSLLVANLP 119 (271)
T ss_dssp GSCTTEEEEEEEC
T ss_pred hccCccEEEecCc
Confidence 32 5889888753
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.07 E-value=9.4e-06 Score=78.50 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=65.2
Q ss_pred CCCCeEEEeCCcccchhhhhc---C---CCeEEEEcCCHHHHHhC--C----C------CC--ceEEeecccccCC-CCC
Q 023470 96 RPGSEVLDLMSSWVSHLPQEV---S---YKRVVGHGLNAQELAKN--P----R------LE--YFIVKDLNQDQKL-EFD 154 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~~---~---~~~v~giD~s~~~l~~~--~----~------~~--~~~~~d~~~~~~l-~~~ 154 (282)
.++.+|||.|||+|..+.... + ..+++|+|+++.+++.+ + . .. .+...++ ... ...
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~---L~~~~~~ 396 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDV---CSLNPED 396 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCG---GGCCGGG
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecch---hcccccc
Confidence 457899999999987654422 2 35799999999887655 1 1 11 1111222 111 223
Q ss_pred CCceeEEEec--chhhccC--------------------------C-HHHHHHHHHHcccCCcEEEEEEcCchh
Q 023470 155 HCSFDAVVCA--VSVQYLQ--------------------------Q-PEKVFAEVFRVLKPGGVFIVSFSNRMF 199 (282)
Q Consensus 155 ~~s~D~v~~~--~~l~~~~--------------------------~-~~~~l~~~~r~LkpgG~li~~~~~~~~ 199 (282)
...||+|+++ ++..... + ...++..+.+.|||||++.+.+|+..+
T Consensus 397 ~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~L 470 (878)
T 3s1s_A 397 FANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYL 470 (878)
T ss_dssp GTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHH
T ss_pred cCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHh
Confidence 5689999998 3221100 1 233788899999999999999997644
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=4.4e-06 Score=75.00 Aligned_cols=93 Identities=17% Similarity=0.124 Sum_probs=61.7
Q ss_pred CCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC-----------------------CceEEeecccccC
Q 023470 97 PGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL-----------------------EYFIVKDLNQDQK 150 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~-----------------------~~~~~~d~~~~~~ 150 (282)
++.+|||+|||+|.. ++...+..+|+++|+++++++.++.+ ..+...|... -
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~--~ 124 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANR--L 124 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHH--H
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHH--H
Confidence 678999999998754 33333567899999999987544321 1233333311 1
Q ss_pred CCCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 151 LEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 151 l~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+....++||+|++.- . .....++..+.+.|||||.++++..
T Consensus 125 ~~~~~~~fD~I~lDP-~---~~~~~~l~~a~~~lk~gG~l~vt~t 165 (378)
T 2dul_A 125 MAERHRYFHFIDLDP-F---GSPMEFLDTALRSAKRRGILGVTAT 165 (378)
T ss_dssp HHHSTTCEEEEEECC-S---SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHhccCCCCEEEeCC-C---CCHHHHHHHHHHhcCCCCEEEEEee
Confidence 111135799999642 1 1346789999999999999888753
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.8e-05 Score=64.58 Aligned_cols=92 Identities=9% Similarity=-0.047 Sum_probs=59.8
Q ss_pred CCCeEEEeCCcccchhhhhcCCCeEEEEcCCHHHHHhCC------C-----CCceEEeecccc------------cCCC-
Q 023470 97 PGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNP------R-----LEYFIVKDLNQD------------QKLE- 152 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~~~~~v~giD~s~~~l~~~~------~-----~~~~~~~d~~~~------------~~l~- 152 (282)
+..+|||+|||..........+.+|+.+|.+++..+.++ + +..+..++.... ..++
T Consensus 30 ~a~~VLEiGtGySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~ 109 (202)
T 3cvo_A 30 EAEVILEYGSGGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPD 109 (202)
T ss_dssp HCSEEEEESCSHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTH
T ss_pred CCCEEEEECchHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHH
Confidence 567899999995443333334789999999998765432 1 234555554211 0011
Q ss_pred -------C-CCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 153 -------F-DHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 153 -------~-~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ..++||+|+.-.- .....+..+.+.|+|||.+++.
T Consensus 110 ~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 110 YPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp HHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCEEEEET
T ss_pred HhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCeEEEEe
Confidence 1 2378999998753 2246677788999999999764
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.00 E-value=2.8e-06 Score=72.02 Aligned_cols=78 Identities=10% Similarity=0.042 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhcCCCe--EEEEcCCHHHHHhCCCC------CceEEeecccccCCCC
Q 023470 82 GFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSYKR--VVGHGLNAQELAKNPRL------EYFIVKDLNQDQKLEF 153 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~~~~~--v~giD~s~~~l~~~~~~------~~~~~~d~~~~~~l~~ 153 (282)
.+...+.+.+ .+.++.+|||||||+|.... ...+.+ |+|+|++++|++.++.. ..+..+|+ ..+++
T Consensus 8 ~i~~~iv~~~--~~~~~~~VLEIG~G~G~lt~-l~~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~---~~~~~ 81 (252)
T 1qyr_A 8 FVIDSIVSAI--NPQKGQAMVEIGPGLAALTE-PVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDA---MTFNF 81 (252)
T ss_dssp HHHHHHHHHH--CCCTTCCEEEECCTTTTTHH-HHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCG---GGCCH
T ss_pred HHHHHHHHhc--CCCCcCEEEEECCCCcHHHH-hhhCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECch---hhCCH
Confidence 3444444433 24567899999999886554 333456 99999999999765543 24555665 45544
Q ss_pred CC-----CceeEEEecc
Q 023470 154 DH-----CSFDAVVCAV 165 (282)
Q Consensus 154 ~~-----~s~D~v~~~~ 165 (282)
++ +..|.|+++.
T Consensus 82 ~~~~~~~~~~~~vvsNl 98 (252)
T 1qyr_A 82 GELAEKMGQPLRVFGNL 98 (252)
T ss_dssp HHHHHHHTSCEEEEEEC
T ss_pred HHhhcccCCceEEEECC
Confidence 32 2346777774
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.00 E-value=8.7e-06 Score=76.49 Aligned_cols=99 Identities=13% Similarity=0.035 Sum_probs=65.2
Q ss_pred CCeEEEeCCcccchhhhhc----------C--------CCeEEEEcCCHHHHHhCCCC-------Cce--EEeecccccC
Q 023470 98 GSEVLDLMSSWVSHLPQEV----------S--------YKRVVGHGLNAQELAKNPRL-------EYF--IVKDLNQDQK 150 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~~~~~----------~--------~~~v~giD~s~~~l~~~~~~-------~~~--~~~d~~~~~~ 150 (282)
..+|||.+||+|..+.... . ..+++|+|+++.+++.|+.+ ..+ ..+|.. ..
T Consensus 245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL--~~ 322 (544)
T 3khk_A 245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSF--LD 322 (544)
T ss_dssp SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTT--TS
T ss_pred CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchh--cC
Confidence 3489999999987654321 0 46899999999887655411 122 333331 11
Q ss_pred CCCCCCceeEEEec--chhh-c----------------------cC----CHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 151 LEFDHCSFDAVVCA--VSVQ-Y----------------------LQ----QPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 151 l~~~~~s~D~v~~~--~~l~-~----------------------~~----~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
-.+.+.+||+|+++ +... + ++ ..-.++..+.+.|||||++.+.+|+..
T Consensus 323 ~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~ 399 (544)
T 3khk_A 323 DQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGS 399 (544)
T ss_dssp CSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHH
T ss_pred cccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchh
Confidence 12346789999998 3321 1 11 112589999999999999999998753
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=2.8e-05 Score=66.51 Aligned_cols=109 Identities=17% Similarity=0.108 Sum_probs=66.3
Q ss_pred HHHHHHHh-hCCCCCeEEEeCCccc---chhhhhcCCCeEEEEcCCHHHHHhCCC----CCceEEeecccccCCCCCCCc
Q 023470 86 TLTNLYRQ-MLRPGSEVLDLMSSWV---SHLPQEVSYKRVVGHGLNAQELAKNPR----LEYFIVKDLNQDQKLEFDHCS 157 (282)
Q Consensus 86 ~~~~~~~~-~~~~~~~vLDiGcG~~---~~~~~~~~~~~v~giD~s~~~l~~~~~----~~~~~~~d~~~~~~l~~~~~s 157 (282)
.|.++... .+.++.+|||+||+.| ..+....+...|+|+|++..+...... ........... ....+..+.
T Consensus 69 KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~-di~~l~~~~ 147 (300)
T 3eld_A 69 KIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKS-NVFTMPTEP 147 (300)
T ss_dssp HHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSC-CTTTSCCCC
T ss_pred HHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCc-eeeecCCCC
Confidence 44444433 4567889999999644 444443455689999998654222111 01112111110 222345678
Q ss_pred eeEEEecchhhccCCH-------HHHHHHHHHcccCC-cEEEEEEcC
Q 023470 158 FDAVVCAVSVQYLQQP-------EKVFAEVFRVLKPG-GVFIVSFSN 196 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~-------~~~l~~~~r~Lkpg-G~li~~~~~ 196 (282)
+|+|+|..+.+ .... ..+++-+.++|+|| |.|++.+-.
T Consensus 148 ~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 148 SDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred cCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 99999987665 3322 12577778999999 999998776
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.96 E-value=2.5e-06 Score=72.59 Aligned_cols=95 Identities=8% Similarity=-0.083 Sum_probs=59.0
Q ss_pred CCCeEEEeCCcccchhhhh-cCCCeEEEEcCCH-------HHHHhCCCC---------CceEEeecccccC-CC-CCC--
Q 023470 97 PGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNA-------QELAKNPRL---------EYFIVKDLNQDQK-LE-FDH-- 155 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~-------~~l~~~~~~---------~~~~~~d~~~~~~-l~-~~~-- 155 (282)
++.+|||+|||+|...... ..+.+|+|+|+|+ .+++.++.+ ..+..+|. .+ ++ +++
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~---~~~l~~~~~~~ 159 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNA---AEQMPALVKTQ 159 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCH---HHHHHHHHHHH
T ss_pred CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCH---HHHHHhhhccC
Confidence 5678999999988643221 1467999999999 888766432 34555555 33 22 333
Q ss_pred CceeEEEecchhhcc--------------------CCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 156 CSFDAVVCAVSVQYL--------------------QQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 156 ~s~D~v~~~~~l~~~--------------------~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++||+|++.-.+.+. .+.+.++.++.++.+. ++++..|.
T Consensus 160 ~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~~--~vvvk~p~ 218 (258)
T 2r6z_A 160 GKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKK--RVVVKRPR 218 (258)
T ss_dssp CCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCSS--EEEEEEET
T ss_pred CCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcCc--EEEEEcCC
Confidence 689999997544332 1334466677777643 45555443
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=5.5e-06 Score=80.24 Aligned_cols=80 Identities=11% Similarity=0.118 Sum_probs=52.1
Q ss_pred CeEEEEcCCHHHHHhCCCC---------CceEEeecccccCC--CCCCCceeEEEec--chhhccC--CHHH---HHHHH
Q 023470 119 KRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKL--EFDHCSFDAVVCA--VSVQYLQ--QPEK---VFAEV 180 (282)
Q Consensus 119 ~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l--~~~~~s~D~v~~~--~~l~~~~--~~~~---~l~~~ 180 (282)
.+|+|+|+++.|++.++.+ ..+...|+ .++ +..+++||+|+++ +....-. +... .+.++
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~---~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~ 333 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDV---AQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRI 333 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCG---GGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh---hhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHH
Confidence 5899999999999765532 25667776 444 3334489999999 5433221 2233 45555
Q ss_pred HHcccCCcEEEEEEcCchhHH
Q 023470 181 FRVLKPGGVFIVSFSNRMFYE 201 (282)
Q Consensus 181 ~r~LkpgG~li~~~~~~~~~~ 201 (282)
.+.+.|||.+++.++++.+..
T Consensus 334 lk~~~~g~~~~ilt~~~~l~~ 354 (703)
T 3v97_A 334 MKNQFGGWNLSLFSASPDLLS 354 (703)
T ss_dssp HHHHCTTCEEEEEESCHHHHH
T ss_pred HHhhCCCCeEEEEeCCHHHHH
Confidence 566678999999888765543
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.94 E-value=6.7e-05 Score=63.37 Aligned_cols=117 Identities=13% Similarity=0.103 Sum_probs=64.5
Q ss_pred CCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCCC----CceEEeecccccCCCCCCC--ceeEEEecch
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPRL----EYFIVKDLNQDQKLEFDHC--SFDAVVCAVS 166 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~----~~~~~~d~~~~~~l~~~~~--s~D~v~~~~~ 166 (282)
+.++.+|||||||+|....... +..+|+|+|+++.|++.++.. ..+..+|+ ..+++++. .+ .|+++.-
T Consensus 29 ~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~---~~~~~~~~~~~~-~vv~NlP 104 (249)
T 3ftd_A 29 IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDA---SKFPFCSLGKEL-KVVGNLP 104 (249)
T ss_dssp CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCT---TTCCGGGSCSSE-EEEEECC
T ss_pred CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcch---hhCChhHccCCc-EEEEECc
Confidence 3467899999999887544433 348999999999999776543 24556666 55555432 23 4555432
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHHHHHHhhhcCCCCcchhhHHHHH
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYF 223 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (282)
.++. ...+..+.+....-..+++.+.. .......+ ...|..+.....++
T Consensus 105 -y~i~--~~il~~ll~~~~~~~~~~~m~Qk-eva~Rl~a----~k~yg~lsv~~q~~ 153 (249)
T 3ftd_A 105 -YNVA--SLIIENTVYNKDCVPLAVFMVQK-EVAEKLQG----KKDTGWLSVFVRTF 153 (249)
T ss_dssp -TTTH--HHHHHHHHHTGGGCSEEEEEEEH-HHHHHHHT----SSCCCHHHHHHHHH
T ss_pred -hhcc--HHHHHHHHhcCCCCceEEEEEeH-HHHHHhhc----cccccHHHHHHHhH
Confidence 2221 23444444433323444444332 22222212 55666666555544
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=5.5e-06 Score=74.57 Aligned_cols=93 Identities=16% Similarity=0.090 Sum_probs=61.7
Q ss_pred CCCeEEEeCCcccchh---hhhcCC-CeEEEEcCCHHHHHhCCCC----------CceEEeecccccCCC-CCCCceeEE
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSY-KRVVGHGLNAQELAKNPRL----------EYFIVKDLNQDQKLE-FDHCSFDAV 161 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~-~~v~giD~s~~~l~~~~~~----------~~~~~~d~~~~~~l~-~~~~s~D~v 161 (282)
++.+|||++||+|... +...++ .+|+++|+++.+++.++.+ ..+..+|.. .-+. ...++||+|
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~--~~l~~~~~~~fD~V 129 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEAN--FFLRKEWGFGFDYV 129 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHH--HHHHSCCSSCEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHH--HHHHHhhCCCCcEE
Confidence 5789999999987542 222233 6899999999887654321 223333431 1111 114579999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
++.- ...+..++..+.+.|+|||.++++..
T Consensus 130 ~lDP----~g~~~~~l~~a~~~Lk~gGll~~t~t 159 (392)
T 3axs_A 130 DLDP----FGTPVPFIESVALSMKRGGILSLTAT 159 (392)
T ss_dssp EECC----SSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EECC----CcCHHHHHHHHHHHhCCCCEEEEEec
Confidence 9864 12336789999999999999988864
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.92 E-value=9.9e-06 Score=62.11 Aligned_cols=97 Identities=10% Similarity=0.101 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhhhh---cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCC-Cce
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQE---VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDH-CSF 158 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~---~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~-~s~ 158 (282)
+.+.+.+.+.+...++.+|||||||.+...+.. ..+..|+++|+++..++ ++..|+ .+..... ..|
T Consensus 21 m~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~-------~v~dDi---F~P~~~~Y~~~ 90 (153)
T 2k4m_A 21 MWNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG-------IVRDDI---TSPRMEIYRGA 90 (153)
T ss_dssp HHHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT-------EECCCS---SSCCHHHHTTE
T ss_pred HHHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc-------eEEccC---CCCcccccCCc
Confidence 455677777777777889999999988533222 26789999999997765 666666 3322111 379
Q ss_pred eEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 159 DAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 159 D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
|+|.+..- -++....+-++.+.. |.-++|..
T Consensus 91 DLIYsirP---P~El~~~i~~lA~~v--~adliI~p 121 (153)
T 2k4m_A 91 ALIYSIRP---PAEIHSSLMRVADAV--GARLIIKP 121 (153)
T ss_dssp EEEEEESC---CTTTHHHHHHHHHHH--TCEEEEEC
T ss_pred CEEEEcCC---CHHHHHHHHHHHHHc--CCCEEEEc
Confidence 99988653 223344444444432 66677763
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.88 E-value=5.9e-05 Score=65.02 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=68.4
Q ss_pred CCCCCeEEEeCCcccchhhhh---cCCCeEEEEcCCHHHHHhCCC-------------CCceEEeecccccCCCCCCCce
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE---VSYKRVVGHGLNAQELAKNPR-------------LEYFIVKDLNQDQKLEFDHCSF 158 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~---~~~~~v~giD~s~~~l~~~~~-------------~~~~~~~d~~~~~~l~~~~~s~ 158 (282)
.+...+||=||-|.|..+... .+..+|+.+||+++.++.+++ +.+..++|.. .-+.-..++|
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~--~~l~~~~~~y 158 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGV--NFVNQTSQTF 158 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTT--TTTSCSSCCE
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHH--HHHhhccccC
Confidence 456789999999877655433 256799999999998875542 1244555552 2334456789
Q ss_pred eEEEecchhhccC----CHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 159 DAVVCAVSVQYLQ----QPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 159 D~v~~~~~l~~~~----~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
|+|+.-..=..-+ --.++++.+.+.|+|||.++.....+
T Consensus 159 DvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp 201 (294)
T 3o4f_A 159 DVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVC 201 (294)
T ss_dssp EEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEES
T ss_pred CEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCc
Confidence 9999864311111 11458999999999999999865443
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=3.8e-05 Score=72.94 Aligned_cols=88 Identities=11% Similarity=0.052 Sum_probs=58.1
Q ss_pred CeEEEeCCcccchh-----hhhcCC--CeEEEEcCCHHHHHh-----C---CCCCceEEeecccccCCCCCCCceeEEEe
Q 023470 99 SEVLDLMSSWVSHL-----PQEVSY--KRVVGHGLNAQELAK-----N---PRLEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 99 ~~vLDiGcG~~~~~-----~~~~~~--~~v~giD~s~~~l~~-----~---~~~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
..|||+|||.|-.. +.+..+ .+|+|++-|+.+... . .....++.+++ +++.++ +++|+|||
T Consensus 359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~---eev~LP-EKVDIIVS 434 (637)
T 4gqb_A 359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDM---REWVAP-EKADIIVS 434 (637)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCT---TTCCCS-SCEEEEEC
T ss_pred cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcc---eeccCC-cccCEEEE
Confidence 46999999987541 111122 378999999854311 1 12235677777 777665 67999999
Q ss_pred cc---hhhccCCHHHHHHHHHHcccCCcEEE
Q 023470 164 AV---SVQYLQQPEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 164 ~~---~l~~~~~~~~~l~~~~r~LkpgG~li 191 (282)
-. .+-+-.. .+++....|.|||||.++
T Consensus 435 EwMG~fLl~E~m-levL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 435 ELLGSFADNELS-PECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCCBTTBGGGCH-HHHHHHHGGGEEEEEEEE
T ss_pred EcCcccccccCC-HHHHHHHHHhcCCCcEEc
Confidence 72 2222223 368889999999999973
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.1e-05 Score=69.31 Aligned_cols=67 Identities=10% Similarity=0.151 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCe----EEEEcCCHHHHHhCCC----CCceEEeecccccCCC
Q 023470 82 GFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKR----VVGHGLNAQELAKNPR----LEYFIVKDLNQDQKLE 152 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~----v~giD~s~~~l~~~~~----~~~~~~~d~~~~~~l~ 152 (282)
.+.+.+.+.+ .+.++.+|||||||+|....... .+.+ |+|+|++++|++.++. ...+..+|+ ..++
T Consensus 29 ~i~~~iv~~~--~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~---~~~~ 103 (279)
T 3uzu_A 29 GVIDAIVAAI--RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDA---LTFD 103 (279)
T ss_dssp HHHHHHHHHH--CCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCG---GGCC
T ss_pred HHHHHHHHhc--CCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECCh---hcCC
Confidence 4544544443 24578899999999886543332 2234 9999999999976653 235667776 5555
Q ss_pred C
Q 023470 153 F 153 (282)
Q Consensus 153 ~ 153 (282)
+
T Consensus 104 ~ 104 (279)
T 3uzu_A 104 F 104 (279)
T ss_dssp G
T ss_pred h
Confidence 4
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.82 E-value=1.2e-05 Score=76.69 Aligned_cols=91 Identities=15% Similarity=0.018 Sum_probs=59.6
Q ss_pred CCeEEEeCCcccchh----hhhc------------CCCeEEEEcCCHHHHHh--------CCCCCceEEeecccccCCCC
Q 023470 98 GSEVLDLMSSWVSHL----PQEV------------SYKRVVGHGLNAQELAK--------NPRLEYFIVKDLNQDQKLEF 153 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~----~~~~------------~~~~v~giD~s~~~l~~--------~~~~~~~~~~d~~~~~~l~~ 153 (282)
+..|||||||+|-.. .+.. ...+|+|+|-|+.++.. -.....++.+++ +++.+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~---eev~l 486 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDM---RSLPG 486 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCG---GGHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCch---hhccc
Confidence 357999999987652 1111 13499999999854321 113356777777 66655
Q ss_pred C-----CCceeEEEecchhhcc--CCHHHHHHHHHHcccCCcEEE
Q 023470 154 D-----HCSFDAVVCAVSVQYL--QQPEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 154 ~-----~~s~D~v~~~~~l~~~--~~~~~~l~~~~r~LkpgG~li 191 (282)
+ .+.+|+|||-..=... .-..++|..+.|.|||||.++
T Consensus 487 p~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 487 IAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 2 4789999997431111 123468888899999999874
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=9.2e-06 Score=70.63 Aligned_cols=68 Identities=10% Similarity=0.103 Sum_probs=47.2
Q ss_pred CCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC-------CCceEEeecccccCCC--C---CCCcee
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQDQKLE--F---DHCSFD 159 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~~~~l~--~---~~~s~D 159 (282)
+.++.+|||+|||+|.+. +...++.+|+|+|+|+.|++.++. ...+..+|+ ..++ + ..++||
T Consensus 24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~---~~l~~~l~~~g~~~~D 100 (301)
T 1m6y_A 24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY---READFLLKTLGIEKVD 100 (301)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCG---GGHHHHHHHTTCSCEE
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCH---HHHHHHHHhcCCCCCC
Confidence 347889999999988653 333356899999999999975542 234566665 3432 1 125799
Q ss_pred EEEecc
Q 023470 160 AVVCAV 165 (282)
Q Consensus 160 ~v~~~~ 165 (282)
+|++..
T Consensus 101 ~Vl~D~ 106 (301)
T 1m6y_A 101 GILMDL 106 (301)
T ss_dssp EEEEEC
T ss_pred EEEEcC
Confidence 999864
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.61 E-value=1.3e-05 Score=72.39 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=46.1
Q ss_pred hCCCCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCCC----------CceEEeecccccC-CCC-CCCceeE
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPRL----------EYFIVKDLNQDQK-LEF-DHCSFDA 160 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~~----------~~~~~~d~~~~~~-l~~-~~~s~D~ 160 (282)
.+.++.+|||+|||+|...... ..+.+|+|+|+|+.|++.++.+ ..+..+|+ .+ ++. ++++||+
T Consensus 90 ~l~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da---~~~L~~~~~~~fDv 166 (410)
T 3ll7_A 90 FIREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDF---KEYLPLIKTFHPDY 166 (410)
T ss_dssp GSCTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCG---GGSHHHHHHHCCSE
T ss_pred hcCCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcH---HHhhhhccCCCceE
Confidence 4445889999999988653222 2567999999999998655322 34555665 33 221 2357999
Q ss_pred EEec
Q 023470 161 VVCA 164 (282)
Q Consensus 161 v~~~ 164 (282)
|++.
T Consensus 167 V~lD 170 (410)
T 3ll7_A 167 IYVD 170 (410)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9996
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00023 Score=60.66 Aligned_cols=106 Identities=18% Similarity=0.155 Sum_probs=67.5
Q ss_pred HHHHHHHh-hCCCCCeEEEeCCccc---chhhhhcCCCeEEEEcCCHHHHHh-------CCCCCceEEe-ecccccCCCC
Q 023470 86 TLTNLYRQ-MLRPGSEVLDLMSSWV---SHLPQEVSYKRVVGHGLNAQELAK-------NPRLEYFIVK-DLNQDQKLEF 153 (282)
Q Consensus 86 ~~~~~~~~-~~~~~~~vLDiGcG~~---~~~~~~~~~~~v~giD~s~~~l~~-------~~~~~~~~~~-d~~~~~~l~~ 153 (282)
.|..+... .+.++..|||+||+.| .+.+...+...|+|+|+...--+. ......+... |+ ..++
T Consensus 82 KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv---~~l~- 157 (321)
T 3lkz_A 82 KLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDV---FYRP- 157 (321)
T ss_dssp HHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCT---TSSC-
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCH---hhCC-
Confidence 45555544 4567889999999644 444454456689999998652111 0111122222 22 3343
Q ss_pred CCCceeEEEecchhhccCCHHH-------HHHHHHHcccCC-cEEEEEEcCc
Q 023470 154 DHCSFDAVVCAVSVQYLQQPEK-------VFAEVFRVLKPG-GVFIVSFSNR 197 (282)
Q Consensus 154 ~~~s~D~v~~~~~l~~~~~~~~-------~l~~~~r~Lkpg-G~li~~~~~~ 197 (282)
...+|+|+|--+ +--+++.. +|+-+.++|++| |-+++-+..+
T Consensus 158 -~~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 158 -SECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp -CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred -CCCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 366999999877 65555432 667778899999 9999998877
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00022 Score=59.73 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=60.0
Q ss_pred HHHHHHHh-hCCCCCeEEEeCCc---ccchhhhhcCCCeEEEEcCCHH--HHHhCC--CCCceEE---e-ecccccCCCC
Q 023470 86 TLTNLYRQ-MLRPGSEVLDLMSS---WVSHLPQEVSYKRVVGHGLNAQ--ELAKNP--RLEYFIV---K-DLNQDQKLEF 153 (282)
Q Consensus 86 ~~~~~~~~-~~~~~~~vLDiGcG---~~~~~~~~~~~~~v~giD~s~~--~l~~~~--~~~~~~~---~-d~~~~~~l~~ 153 (282)
.|.++-.+ .++++.+|||+||+ |..+.+...+...|.|.++... +..... ...+++. + |+ .++
T Consensus 61 KL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df---~~~-- 135 (269)
T 2px2_A 61 KLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDV---FYK-- 135 (269)
T ss_dssp HHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCG---GGS--
T ss_pred HHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCc---cCC--
Confidence 33344333 56789999999994 6556655422223344443332 211111 1113333 4 66 333
Q ss_pred CCCceeEEEecchhhccCCH----H---HHHHHHHHcccCCc-EEEEEEcCc
Q 023470 154 DHCSFDAVVCAVSVQYLQQP----E---KVFAEVFRVLKPGG-VFIVSFSNR 197 (282)
Q Consensus 154 ~~~s~D~v~~~~~l~~~~~~----~---~~l~~~~r~LkpgG-~li~~~~~~ 197 (282)
+...+|+|+|-.+-. ..+. . .+|.-+.++|+||| .|++-+-++
T Consensus 136 ~~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg 186 (269)
T 2px2_A 136 PSEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP 186 (269)
T ss_dssp CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred CCCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence 346799999986543 2221 1 15766779999999 898887664
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00063 Score=60.29 Aligned_cols=85 Identities=20% Similarity=0.200 Sum_probs=55.8
Q ss_pred hCCCCCeEEEeCCc---ccchhhhhcCCCeEEEEcCCHHHH-HhCCCCCceEEeecccccCCCCCCCceeEEEecchhhc
Q 023470 94 MLRPGSEVLDLMSS---WVSHLPQEVSYKRVVGHGLNAQEL-AKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 94 ~~~~~~~vLDiGcG---~~~~~~~~~~~~~v~giD~s~~~l-~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~ 169 (282)
.+.++++|||+||. |...+.. .+.+|+|||+.+-.- ........+...|. .....+.+.||+|+|-.+.
T Consensus 208 ~l~~G~~vlDLGAaPGGWT~~l~~--rg~~V~aVD~~~l~~~l~~~~~V~~~~~d~---~~~~~~~~~~D~vvsDm~~-- 280 (375)
T 4auk_A 208 RLANGMWAVDLGACPGGWTYQLVK--RNMWVYSVDNGPMAQSLMDTGQVTWLREDG---FKFRPTRSNISWMVCDMVE-- 280 (375)
T ss_dssp HSCTTCEEEEETCTTCHHHHHHHH--TTCEEEEECSSCCCHHHHTTTCEEEECSCT---TTCCCCSSCEEEEEECCSS--
T ss_pred cCCCCCEEEEeCcCCCHHHHHHHH--CCCEEEEEEhhhcChhhccCCCeEEEeCcc---ccccCCCCCcCEEEEcCCC--
Confidence 46789999999994 5555554 578999999874211 11223344555555 5555556789999997754
Q ss_pred cCCHHHHHHHHHHcccCC
Q 023470 170 LQQPEKVFAEVFRVLKPG 187 (282)
Q Consensus 170 ~~~~~~~l~~~~r~Lkpg 187 (282)
++...+.-+.++|..|
T Consensus 281 --~p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 281 --KPAKVAALMAQWLVNG 296 (375)
T ss_dssp --CHHHHHHHHHHHHHTT
T ss_pred --ChHHhHHHHHHHHhcc
Confidence 5566666666666655
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00081 Score=55.58 Aligned_cols=107 Identities=19% Similarity=0.223 Sum_probs=68.3
Q ss_pred HHHHHHHh-hCCCCCeEEEeCCc---ccchhhhhcCCCeEEEEcCCHHHHHh-------CCCCCceEEe-ecccccCCCC
Q 023470 86 TLTNLYRQ-MLRPGSEVLDLMSS---WVSHLPQEVSYKRVVGHGLNAQELAK-------NPRLEYFIVK-DLNQDQKLEF 153 (282)
Q Consensus 86 ~~~~~~~~-~~~~~~~vLDiGcG---~~~~~~~~~~~~~v~giD~s~~~l~~-------~~~~~~~~~~-d~~~~~~l~~ 153 (282)
.+.++..+ .+.++..|||+||+ |..+.+...+..+|+|+|+-..--+. ......|..+ |+ ..++
T Consensus 66 KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv---~~~~- 141 (267)
T 3p8z_A 66 KLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDV---FYLP- 141 (267)
T ss_dssp HHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCG---GGCC-
T ss_pred HHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccce---eecC-
Confidence 44555444 45678899999995 44455555566789999998643321 1123344544 54 3333
Q ss_pred CCCceeEEEecchhhccCCHH-------HHHHHHHHcccCCcEEEEEEcCchh
Q 023470 154 DHCSFDAVVCAVSVQYLQQPE-------KVFAEVFRVLKPGGVFIVSFSNRMF 199 (282)
Q Consensus 154 ~~~s~D~v~~~~~l~~~~~~~-------~~l~~~~r~LkpgG~li~~~~~~~~ 199 (282)
..++|+|+|-.+= -.+++. .+|+-+.++|++ |.+++-+..+..
T Consensus 142 -~~~~DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~ 191 (267)
T 3p8z_A 142 -PEKCDTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM 191 (267)
T ss_dssp -CCCCSEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred -CccccEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence 3679999998654 222322 167777899999 888888877644
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.36 E-value=3.2e-05 Score=65.66 Aligned_cols=90 Identities=14% Similarity=-0.072 Sum_probs=51.2
Q ss_pred CCC--CeEEEeCCcccchhhhh-cCCCeEEEEcCCHHH-------HHhCC----------CCCceEEeecccccCCCCCC
Q 023470 96 RPG--SEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQE-------LAKNP----------RLEYFIVKDLNQDQKLEFDH 155 (282)
Q Consensus 96 ~~~--~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~-------l~~~~----------~~~~~~~~d~~~~~~l~~~~ 155 (282)
.++ .+|||+|||+|...... ..+++|+++|+++.+ ++.++ .+..+..+|.. .-++...
T Consensus 85 ~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~--~~L~~~~ 162 (258)
T 2oyr_A 85 KGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL--TALTDIT 162 (258)
T ss_dssp BTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH--HHSTTCS
T ss_pred cCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHH--HHHHhCc
Confidence 456 79999999988642211 135689999999964 33222 11234555542 1133112
Q ss_pred CceeEEEecchhhccCCHHHHHHHHHHcccCCc
Q 023470 156 CSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGG 188 (282)
Q Consensus 156 ~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG 188 (282)
.+||+|++.-...+- ....++++..++|++.+
T Consensus 163 ~~fDvV~lDP~y~~~-~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 163 PRPQVVYLDPMFPHK-QKSALVKKEMRVFQSLV 194 (258)
T ss_dssp SCCSEEEECCCCCCC-CC-----HHHHHHHHHS
T ss_pred ccCCEEEEcCCCCCc-ccchHHHHHHHHHHHhh
Confidence 369999998666553 22356666777776654
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0001 Score=62.53 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=26.9
Q ss_pred ceeEEEec-chhhccCC--HHHHHHHHHHcccCCcEEEE
Q 023470 157 SFDAVVCA-VSVQYLQQ--PEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 157 s~D~v~~~-~~l~~~~~--~~~~l~~~~r~LkpgG~li~ 192 (282)
.||+|+.- ++-...++ -+.+++.++++|||||.|+.
T Consensus 173 ~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 173 KVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp CEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred eEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 79999985 33322222 35799999999999999884
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00039 Score=59.26 Aligned_cols=105 Identities=11% Similarity=0.098 Sum_probs=64.7
Q ss_pred HHHHHHHHh---hCCCCCeEEEeCCc------ccchhh-hhcCC-CeEEEEcCCHHHHHhCCCCCceEEeecccccCCCC
Q 023470 85 STLTNLYRQ---MLRPGSEVLDLMSS------WVSHLP-QEVSY-KRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEF 153 (282)
Q Consensus 85 ~~~~~~~~~---~~~~~~~vLDiGcG------~~~~~~-~~~~~-~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~ 153 (282)
.++-+.+.. -++.+++|||+|+| -|.... +..+. ..|+++|+.+-.. ....++++|. ..+..
T Consensus 94 tqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s----da~~~IqGD~---~~~~~ 166 (344)
T 3r24_A 94 TQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS----DADSTLIGDC---ATVHT 166 (344)
T ss_dssp HHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC----SSSEEEESCG---GGEEE
T ss_pred HHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc----CCCeEEEccc---ccccc
Confidence 344455533 23568999999974 133333 33343 6999999987321 1224577776 33322
Q ss_pred CCCceeEEEecchhh---cc--CC-----H-HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 154 DHCSFDAVVCAVSVQ---YL--QQ-----P-EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 154 ~~~s~D~v~~~~~l~---~~--~~-----~-~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.+.||+|+|-.+-. +. +. + +.++.=+.++|+|||.|++-+-..
T Consensus 167 -~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG 220 (344)
T 3r24_A 167 -ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 220 (344)
T ss_dssp -SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred -CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC
Confidence 47799999985322 11 11 2 346777888999999999986554
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00023 Score=77.64 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=45.8
Q ss_pred CCCeEEEeCCcccchhhh---hcC-----CCeEEEEcCCHHHHHhCCCCCceEEeeccc---c-cC-CCCCCCceeEEEe
Q 023470 97 PGSEVLDLMSSWVSHLPQ---EVS-----YKRVVGHGLNAQELAKNPRLEYFIVKDLNQ---D-QK-LEFDHCSFDAVVC 163 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~---~~~-----~~~v~giD~s~~~l~~~~~~~~~~~~d~~~---~-~~-l~~~~~s~D~v~~ 163 (282)
+..+|||||.|+|..... ... ..+++..|+|+...+.+++... ..|+.. + .. .++...+||+|++
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~--~~di~~~~~d~~~~~~~~~~~ydlvia 1317 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLE--QLHVTQGQWDPANPAPGSLGKADLLVC 1317 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHH--HHTEEEECCCSSCCCC-----CCEEEE
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhh--hcccccccccccccccCCCCceeEEEE
Confidence 567999999987653222 111 3478899999877766665421 111110 0 12 1334567999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
..++|..++....+.+++++|||||++++..
T Consensus 1318 ~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1318 NCALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp ECC--------------------CCEEEEEE
T ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999988999999999999999999988753
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0013 Score=61.46 Aligned_cols=98 Identities=16% Similarity=0.116 Sum_probs=62.6
Q ss_pred CCCeEEEeCCcccchhhhhc----------------CCCeEEEEcCCHHHHHhCC--------CCCceEEeecccccCCC
Q 023470 97 PGSEVLDLMSSWVSHLPQEV----------------SYKRVVGHGLNAQELAKNP--------RLEYFIVKDLNQDQKLE 152 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~----------------~~~~v~giD~s~~~l~~~~--------~~~~~~~~d~~~~~~l~ 152 (282)
++.+|+|-+||+|.++.... ....++|+|+++.+...|+ ...++..+|. ...+
T Consensus 217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dt---L~~~ 293 (530)
T 3ufb_A 217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENS---LRFP 293 (530)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCT---TCSC
T ss_pred CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccccccccc---ccCc
Confidence 46789999999988764321 1357999999998765543 2233444443 1111
Q ss_pred ----CCCCceeEEEec--chhhcc-----------C--CH-HHHHHHHHHccc-------CCcEEEEEEcCc
Q 023470 153 ----FDHCSFDAVVCA--VSVQYL-----------Q--QP-EKVFAEVFRVLK-------PGGVFIVSFSNR 197 (282)
Q Consensus 153 ----~~~~s~D~v~~~--~~l~~~-----------~--~~-~~~l~~~~r~Lk-------pgG~li~~~~~~ 197 (282)
.+...||+|+++ |...+- + +. -.++..+.+.|| |||++.+.+|+.
T Consensus 294 ~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g 365 (530)
T 3ufb_A 294 LREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNG 365 (530)
T ss_dssp GGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHH
T ss_pred hhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecch
Confidence 123579999999 332111 0 11 126778888887 799999998865
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00047 Score=61.23 Aligned_cols=101 Identities=22% Similarity=0.255 Sum_probs=59.9
Q ss_pred hCCCCCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhCC------------CCCceEEeecccccCCC-CCCCc
Q 023470 94 MLRPGSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKNP------------RLEYFIVKDLNQDQKLE-FDHCS 157 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~~------------~~~~~~~~d~~~~~~l~-~~~~s 157 (282)
...++.+|||++||-|. +++.......|+++|+|+.-+...+ ......+...+. ..++ ...+.
T Consensus 145 ~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~-~~~~~~~~~~ 223 (359)
T 4fzv_A 145 GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDG-RKWGELEGDT 223 (359)
T ss_dssp CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCG-GGHHHHSTTC
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCch-hhcchhcccc
Confidence 35578999999996543 4444445568999999986443211 001222222211 2322 34578
Q ss_pred eeEEEec----c---h-hhccCC---------------H-HHHHHHHHHcccCCcEEEEEEc
Q 023470 158 FDAVVCA----V---S-VQYLQQ---------------P-EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 158 ~D~v~~~----~---~-l~~~~~---------------~-~~~l~~~~r~LkpgG~li~~~~ 195 (282)
||.|++- . . +..-++ . ..+|..+.+.|||||+|+-++-
T Consensus 224 fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTC 285 (359)
T 4fzv_A 224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTC 285 (359)
T ss_dssp EEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred CCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Confidence 9999963 2 1 111111 1 2378899999999999998753
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0016 Score=57.91 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=60.6
Q ss_pred CCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCCCC----------------ceEEeecccc-cCCCCCCCc
Q 023470 97 PGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPRLE----------------YFIVKDLNQD-QKLEFDHCS 157 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~----------------~~~~~d~~~~-~~l~~~~~s 157 (282)
+..+||=||.|.|..+.... +..+|+.+||+++.++.+++.. +..+.|...- ....-..++
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~ 284 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE 284 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence 46789999998766544332 4579999999999987665321 2223332100 011112457
Q ss_pred eeEEEecchhhcc-CCH---------HHHHHHHHHcccCCcEEEEEE
Q 023470 158 FDAVVCAVSVQYL-QQP---------EKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 158 ~D~v~~~~~l~~~-~~~---------~~~l~~~~r~LkpgG~li~~~ 194 (282)
||+|+.-..-... .++ .++++.+.++|+|||.++...
T Consensus 285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 9999986321111 111 357889999999999998753
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0064 Score=52.04 Aligned_cols=94 Identities=7% Similarity=0.002 Sum_probs=59.2
Q ss_pred CCCeEEEeCCcccc---hhhhhc-----CCCeEEEEcCCHH---------------------------------HHHhCC
Q 023470 97 PGSEVLDLMSSWVS---HLPQEV-----SYKRVVGHGLNAQ---------------------------------ELAKNP 135 (282)
Q Consensus 97 ~~~~vLDiGcG~~~---~~~~~~-----~~~~v~giD~s~~---------------------------------~l~~~~ 135 (282)
....|||+|+..|. .++... +..+|+++|..+. .++++.
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 45689999995443 222222 3679999996321 112221
Q ss_pred ---CCCceEEeecccccCCC-CCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 136 ---RLEYFIVKDLNQDQKLE-FDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 136 ---~~~~~~~~d~~~~~~l~-~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
....++.++.. +.++ +++++||+|..-.-. -..-...++.+...|+|||.+++..
T Consensus 186 l~~~~I~li~Gda~--etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 186 LLDEQVRFLPGWFK--DTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp CCSTTEEEEESCHH--HHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCcCceEEEEeCHH--HHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcC
Confidence 33456666663 3343 345789999887532 1123468999999999999998864
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0028 Score=54.71 Aligned_cols=42 Identities=19% Similarity=0.070 Sum_probs=32.8
Q ss_pred hCCCCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCC
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNP 135 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~ 135 (282)
...++..|||++||+|...... ..+.+++|+|+++.+++.++
T Consensus 232 ~~~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~ 274 (297)
T 2zig_A 232 FSFVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAK 274 (297)
T ss_dssp HCCTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 3457889999999988754433 36789999999999987654
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0047 Score=52.65 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=44.9
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC----CCceEEeecccccCCC-----CCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR----LEYFIVKDLNQDQKLE-----FDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~----~~~~~~~d~~~~~~l~-----~~~~s~D~v~~~ 164 (282)
+.++..+||.+||.|.+..... .+.+|+|+|.++.+++.++. ...++..+. .+++ ...+++|.|++.
T Consensus 20 ~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f---~~l~~~L~~~g~~~vDgIL~D 96 (285)
T 1wg8_A 20 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNF---RHLKRHLAALGVERVDGILAD 96 (285)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCG---GGHHHHHHHTTCSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHhhccCCEEEEECCc---chHHHHHHHcCCCCcCEEEeC
Confidence 4578899999999876543322 26799999999999866543 234445554 2221 122579999975
Q ss_pred c
Q 023470 165 V 165 (282)
Q Consensus 165 ~ 165 (282)
.
T Consensus 97 L 97 (285)
T 1wg8_A 97 L 97 (285)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.012 Score=47.20 Aligned_cols=93 Identities=22% Similarity=0.198 Sum_probs=58.1
Q ss_pred hCCCCCeEEEeCC--cccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-C-CCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMS--SWVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-E-FDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGc--G~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~-~~~~s~D~v~~~ 164 (282)
.+.++.+||..|+ |.|....+.. .+.+|+++|.+++.++.++......+.+.... +.+ . .....+|+++.+
T Consensus 35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~ 114 (198)
T 1pqw_A 35 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNS 114 (198)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEEC
Confidence 3567889999995 3555443322 45799999999887654433321123343211 000 0 112469999976
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-. ...++.+.+.|+|||++++.
T Consensus 115 ~g-------~~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 115 LA-------GEAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp CC-------THHHHHHHHTEEEEEEEEEC
T ss_pred Cc-------hHHHHHHHHHhccCCEEEEE
Confidence 53 24678999999999998764
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.067 Score=47.79 Aligned_cols=98 Identities=18% Similarity=0.188 Sum_probs=61.4
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC------CC-CCCceeEEE
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL------EF-DHCSFDAVV 162 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l------~~-~~~s~D~v~ 162 (282)
.+.++.+||-+|||. |.. +++..+..+|+++|.|++.++.++...- .+.+... .++ .. ....+|+|+
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-~~i~~~~-~~~~~~~~~~~~~g~g~Dvvi 259 (398)
T 2dph_A 182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGF-ETIDLRN-SAPLRDQIDQILGKPEVDCGV 259 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTC-EEEETTS-SSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-cEEcCCC-cchHHHHHHHHhCCCCCCEEE
Confidence 466889999999973 432 3333344499999999988776665442 2333321 111 00 123699998
Q ss_pred ecchhhcc--------CCHHHHHHHHHHcccCCcEEEEE
Q 023470 163 CAVSVQYL--------QQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 163 ~~~~l~~~--------~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-+-.-... .++...++.+.++|++||++++.
T Consensus 260 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 260 DAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp ECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred ECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 77543210 02345789999999999998753
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.081 Score=47.20 Aligned_cols=100 Identities=20% Similarity=0.220 Sum_probs=62.9
Q ss_pred hhCCCCCeEEEeCCc-ccch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccC----C-C-CCCCceeEEE
Q 023470 93 QMLRPGSEVLDLMSS-WVSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQK----L-E-FDHCSFDAVV 162 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG-~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~----l-~-~~~~s~D~v~ 162 (282)
..+.++.+||-+||| .|.. +++..+..+|+++|.+++.++.++...-- +.+...... + . .....+|+|+
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~i~~~~~~~~~~~v~~~t~g~g~Dvvi 259 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE-IADLSLDTPLHEQIAALLGEPEVDCAV 259 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE-EEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCc-EEccCCcchHHHHHHHHhCCCCCCEEE
Confidence 356688999999996 3332 33333444899999999877766544321 233221010 0 0 0123699999
Q ss_pred ecchhh---------ccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 163 CAVSVQ---------YLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 163 ~~~~l~---------~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-+-.-. |.+++...++.+.++|++||++++.
T Consensus 260 d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 260 DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred ECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 875422 3345667899999999999998754
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.035 Score=48.23 Aligned_cols=93 Identities=16% Similarity=0.122 Sum_probs=58.7
Q ss_pred hCCCCCeEEEeCC-c-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccC----C-CCCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQK----L-EFDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~----l-~~~~~s~D~v~~~ 164 (282)
.+.++.+||-.|| | .|....+.. .+.+|+++|.+++.++.++......+.|.....+ + ....+.+|+++.+
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~ 221 (333)
T 1v3u_A 142 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDN 221 (333)
T ss_dssp CCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEES
T ss_pred CCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEEC
Confidence 3567889999998 3 554433322 5679999999987765543332223334422001 0 0112469999987
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-.- ..++.+.+.|++||++++.
T Consensus 222 ~g~-------~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 222 VGG-------EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp SCH-------HHHHHHHTTEEEEEEEEEC
T ss_pred CCh-------HHHHHHHHHHhcCCEEEEE
Confidence 652 3578899999999998764
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.035 Score=49.13 Aligned_cols=94 Identities=10% Similarity=0.063 Sum_probs=58.5
Q ss_pred hCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-CCCCCceeEEEecc
Q 023470 94 MLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-EFDHCSFDAVVCAV 165 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~~~~~s~D~v~~~~ 165 (282)
.+.++.+||-+|||. |.. +++..+..+|+++|.+++.++.++....-.+.+.... +.+ ...++.+|+|+-+-
T Consensus 187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~ 266 (371)
T 1f8f_A 187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALEST 266 (371)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECC
Confidence 456789999999973 432 2333344479999999987766543321122232110 001 11123699998765
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ....++.+.+.|++||++++.
T Consensus 267 g------~~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 267 G------SPEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp C------CHHHHHHHHHTEEEEEEEEEC
T ss_pred C------CHHHHHHHHHHHhcCCEEEEe
Confidence 4 145788999999999998764
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.22 E-value=0.068 Score=44.91 Aligned_cols=46 Identities=17% Similarity=0.170 Sum_probs=34.1
Q ss_pred HHHhhCCCCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCC
Q 023470 90 LYRQMLRPGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNP 135 (282)
Q Consensus 90 ~~~~~~~~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~ 135 (282)
++.....++..|||..||.|...... ..+.+++|+|+++.+++.++
T Consensus 205 ~i~~~~~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 205 IIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 33444568899999999988654333 35789999999998876554
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.23 Score=43.87 Aligned_cols=95 Identities=15% Similarity=0.095 Sum_probs=59.7
Q ss_pred hhCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc------cC-CCCCCCceeEE
Q 023470 93 QMLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD------QK-LEFDHCSFDAV 161 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~------~~-l~~~~~s~D~v 161 (282)
..+.++.+||=+|+|. |.. +++..+..+|+++|.+++.++.++....-.+.+.... .. .....+.+|+|
T Consensus 178 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvv 257 (370)
T 4ej6_A 178 SGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVV 257 (370)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEE
Confidence 3567889999999963 332 3333344499999999987765544321122232110 01 01223479999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+-+-. -...++.+.+.|++||++++.
T Consensus 258 id~~G------~~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 258 IECAG------VAETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp EECSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred EECCC------CHHHHHHHHHHhccCCEEEEE
Confidence 97643 245788999999999998864
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.071 Score=46.34 Aligned_cols=92 Identities=16% Similarity=0.055 Sum_probs=59.2
Q ss_pred hCCCCCeEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhC-CCCCceEEeecccccCC-----CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKN-PRLEYFIVKDLNQDQKL-----EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~-~~~~~~~~~d~~~~~~l-----~~~~~s~D~v~~ 163 (282)
.+.++.+||-.|| | .|....+. ..+.+|+++|.+++.++.+ +....-.+.+... .++ ....+.+|+|+.
T Consensus 146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~d~vi~ 224 (336)
T 4b7c_A 146 QPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKN-EDLAAGLKRECPKGIDVFFD 224 (336)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTT-SCHHHHHHHHCTTCEEEEEE
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCC-HHHHHHHHHhcCCCceEEEE
Confidence 4668899999999 4 44433322 2567999999998877655 4433222333321 110 011246999988
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+-. ...+..+.+.|++||++++.
T Consensus 225 ~~g-------~~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 225 NVG-------GEILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp SSC-------HHHHHHHHTTEEEEEEEEEC
T ss_pred CCC-------cchHHHHHHHHhhCCEEEEE
Confidence 665 24788999999999998864
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.11 Score=45.16 Aligned_cols=93 Identities=14% Similarity=0.053 Sum_probs=58.5
Q ss_pred hCCCCCeEEEeCC-c-ccchhhhhc--CCCeEEEEcCCHHHHHhCC-CCCceEEeecccccCCC-----CCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQEV--SYKRVVGHGLNAQELAKNP-RLEYFIVKDLNQDQKLE-----FDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~~~--~~~~v~giD~s~~~l~~~~-~~~~~~~~d~~~~~~l~-----~~~~s~D~v~~ 163 (282)
.+.++.+||-.|| | .|....+.. .+.+|+++|.+++.++.++ ....-.+.|.....++. ...+.+|+|+.
T Consensus 152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~ 231 (345)
T 2j3h_A 152 SPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFE 231 (345)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEE
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEE
Confidence 3567889999998 4 454333322 4679999999987766544 33212233432111110 11246999998
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+-.- ..++.+.+.|++||++++.
T Consensus 232 ~~g~-------~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 232 NVGG-------KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp SSCH-------HHHHHHHTTEEEEEEEEEC
T ss_pred CCCH-------HHHHHHHHHHhcCCEEEEE
Confidence 7642 3688999999999998764
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.2 Score=44.09 Aligned_cols=91 Identities=14% Similarity=0.108 Sum_probs=57.6
Q ss_pred CCCeEEEeC-Cc-ccch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc--cC-CCCCCCceeEEEecchhh
Q 023470 97 PGSEVLDLM-SS-WVSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD--QK-LEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 97 ~~~~vLDiG-cG-~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~--~~-l~~~~~s~D~v~~~~~l~ 168 (282)
++.+||=+| +| .|.. +++...+.+|+++|.+++.++.+++...-.+.+...+ +. .....+.+|+|+-+-.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g-- 248 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTH-- 248 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSC--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCC--
Confidence 567899998 65 3432 3333367899999999877665544332222232211 00 0123457999987643
Q ss_pred ccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 169 YLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-...+..+.++|++||++++.
T Consensus 249 ----~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 249 ----TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp ----HHHHHHHHHHHSCTTCEEEEC
T ss_pred ----chhhHHHHHHHhcCCCEEEEE
Confidence 245788999999999999865
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=93.54 E-value=0.18 Score=43.83 Aligned_cols=92 Identities=16% Similarity=0.120 Sum_probs=58.3
Q ss_pred hCCCCCeEEEeCCc-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC-----CCCCCceeEEEecc
Q 023470 94 MLRPGSEVLDLMSS-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-----EFDHCSFDAVVCAV 165 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-----~~~~~s~D~v~~~~ 165 (282)
.+.++.+||-+|+| .|....+. ..+.+|+++|.+++.++.++....-.+.+... .++ ... +.+|+|+.+.
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~-~~~~~~~~~~~-~~~d~vid~~ 238 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLK-EDAAKFMKEKV-GGVHAAVVTA 238 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTT-SCHHHHHHHHH-SSEEEEEESS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCC-ccHHHHHHHHh-CCCCEEEECC
Confidence 56788999999996 34433222 24569999999988776554332212333321 111 001 3699998765
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.. ...++.+.+.|++||++++.
T Consensus 239 g~------~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 239 VS------KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp CC------HHHHHHHHHHEEEEEEEEEC
T ss_pred CC------HHHHHHHHHHhhcCCEEEEe
Confidence 41 35678899999999998754
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.45 E-value=0.14 Score=44.84 Aligned_cols=93 Identities=14% Similarity=0.080 Sum_probs=58.1
Q ss_pred hCCCCCeEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCCC--CCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKLE--FDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l~--~~~~s~D~v~~~ 164 (282)
.+.++.+||-.|+ | .|....+. ..+.+|+++|.+++.++.++....-.+.+.... ..+. .....+|+|+.+
T Consensus 167 ~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~ 246 (351)
T 1yb5_A 167 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM 246 (351)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred CCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEEC
Confidence 4567889999998 4 44433322 256799999999877655443322223333211 0000 112369999987
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
..- ..+..+.++|++||++++.
T Consensus 247 ~G~-------~~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 247 LAN-------VNLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp CHH-------HHHHHHHHHEEEEEEEEEC
T ss_pred CCh-------HHHHHHHHhccCCCEEEEE
Confidence 652 3577889999999998764
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.22 E-value=0.34 Score=42.26 Aligned_cols=94 Identities=11% Similarity=0.011 Sum_probs=57.9
Q ss_pred hCCCCCeEEEeCCc-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC----C--CC---CCceeEE
Q 023470 94 MLRPGSEVLDLMSS-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL----E--FD---HCSFDAV 161 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l----~--~~---~~s~D~v 161 (282)
.+.++.+||-+|+| .|....+. ..+.+|+++|.+++.++.++....-.+.+.....++ . .. ...+|+|
T Consensus 165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~v 244 (352)
T 1e3j_A 165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 244 (352)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEE
Confidence 56788999999996 34332221 245679999999987765543321122333210011 0 01 2458999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+.+-. ....++.+.++|+|||++++.
T Consensus 245 id~~g------~~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 245 IDCSG------NEKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp EECSC------CHHHHHHHHHHSCTTCEEEEC
T ss_pred EECCC------CHHHHHHHHHHHhcCCEEEEE
Confidence 87653 134678899999999998764
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=93.00 E-value=0.54 Score=41.09 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=57.5
Q ss_pred hCCCCCeEEEeCCc-ccch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecc----cc--cCC-CCCCCceeEEE
Q 023470 94 MLRPGSEVLDLMSS-WVSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLN----QD--QKL-EFDHCSFDAVV 162 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~----~~--~~l-~~~~~s~D~v~ 162 (282)
.+.++.+||-+|+| .|.. +++..+..+|+++|.+++.++.++....-.+.+.. .+ ..+ ....+.+|+|+
T Consensus 168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vi 247 (356)
T 1pl8_A 168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTI 247 (356)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEE
Confidence 46788999999997 3433 23333334999999999876655433211222321 00 011 00014589998
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-+-. -...+..+.++|+|||++++.
T Consensus 248 d~~g------~~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 248 ECTG------AEASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp ECSC------CHHHHHHHHHHSCTTCEEEEC
T ss_pred ECCC------ChHHHHHHHHHhcCCCEEEEE
Confidence 7643 145678899999999998764
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.16 Score=44.34 Aligned_cols=88 Identities=10% Similarity=0.041 Sum_probs=56.4
Q ss_pred hCCCCCeEEEeCCcc-cchhhhh--cCCCeEEEEcCCHHHHHhCCCCC-ceEEeecccccCCCCCCCceeEEEecchhhc
Q 023470 94 MLRPGSEVLDLMSSW-VSHLPQE--VSYKRVVGHGLNAQELAKNPRLE-YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~ 169 (282)
.+.++.+||-+|+|. |....+. ..+.+|+++|.+++.++.+++.. ...+.+. ..+ . ..+|+|+-+-.-.
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~---~~~--~-~~~D~vid~~g~~- 245 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDP---KQC--K-EELDFIISTIPTH- 245 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSG---GGC--C-SCEEEEEECCCSC-
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCH---HHH--h-cCCCEEEECCCcH-
Confidence 567889999999973 3322221 24569999999987665554432 1222111 222 2 2799999765421
Q ss_pred cCCHHHHHHHHHHcccCCcEEEEE
Q 023470 170 LQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 170 ~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
..++.+.++|+|||++++.
T Consensus 246 -----~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 246 -----YDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp -----CCHHHHHTTEEEEEEEEEC
T ss_pred -----HHHHHHHHHHhcCCEEEEE
Confidence 2467889999999998865
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=92.89 E-value=0.053 Score=46.55 Aligned_cols=44 Identities=32% Similarity=0.665 Sum_probs=31.2
Q ss_pred CCCCceeEEEec--ch-h-h----------------ccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 153 FDHCSFDAVVCA--VS-V-Q----------------YLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 153 ~~~~s~D~v~~~--~~-l-~----------------~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+++++||+|+++ +. . . ++.....+++++.|+|||||.+++.+.+
T Consensus 36 l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 36 FPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp SCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence 456889999988 21 1 1 1112345788999999999999998764
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.83 E-value=0.12 Score=45.80 Aligned_cols=91 Identities=15% Similarity=0.053 Sum_probs=56.4
Q ss_pred hCCCCCeEEEeCCc-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCCCCCCCceeEEEecchh
Q 023470 94 MLRPGSEVLDLMSS-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l~~~~~s~D~v~~~~~l 167 (282)
.+.++.+||-+|+| .|....+. ..+.+|+++|.|++.++.+++...-.+.+.... ..+. +.+|+|+.+-.-
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~---~g~Dvvid~~g~ 267 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHL---KSFDFILNTVAA 267 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTT---TCEEEEEECCSS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhh---cCCCEEEECCCC
Confidence 56788999999997 34332221 246689999999876655443221122232110 1221 469999876542
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
...++.+.+.|+|||+++..
T Consensus 268 ------~~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 268 ------PHNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp ------CCCHHHHHTTEEEEEEEEEC
T ss_pred ------HHHHHHHHHHhccCCEEEEe
Confidence 12467888999999998754
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=92.82 E-value=0.67 Score=39.96 Aligned_cols=98 Identities=21% Similarity=0.124 Sum_probs=60.8
Q ss_pred CeEEEeCCcccchhhhhc-C-CCeEEEEcCCHHHHHhC-----------CCCCceEEeecccc--cCC---CCCCCceeE
Q 023470 99 SEVLDLMSSWVSHLPQEV-S-YKRVVGHGLNAQELAKN-----------PRLEYFIVKDLNQD--QKL---EFDHCSFDA 160 (282)
Q Consensus 99 ~~vLDiGcG~~~~~~~~~-~-~~~v~giD~s~~~l~~~-----------~~~~~~~~~d~~~~--~~l---~~~~~s~D~ 160 (282)
..|+++|||.-....+.. + +.+++-+|. +..++.. .....++..|+..+ ..+ .+....-=+
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD~-P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt~ 182 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA 182 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcCC-HHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCCEE
Confidence 469999999643333322 3 479999994 6555321 11223455565321 001 122233457
Q ss_pred EEecchhhccCC--HHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 161 VVCAVSVQYLQQ--PEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 161 v~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+++-.+++++++ ...+++.+...+.||+.++++...+
T Consensus 183 ~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 183 WLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp EEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred EEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 778889999974 3458899999889999999986544
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=0.12 Score=44.83 Aligned_cols=92 Identities=16% Similarity=0.143 Sum_probs=58.4
Q ss_pred hCCCCCeEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC-----C-CCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-----E-FDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-----~-~~~~s~D~v~~ 163 (282)
.+.++.+||-+|+ | .|....+. ..+.+|+++|.+++.++.++....-.+.+... .++ . .....+|+|+.
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~-~~~~~~~~~~~~~~g~D~vid 223 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASK-EDILRQVLKFTNGKGVDASFD 223 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTT-SCHHHHHHHHTTTSCEEEEEE
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCC-chHHHHHHHHhCCCCceEEEE
Confidence 3567899999995 4 44333222 25679999999988776555443222333321 111 0 11346999998
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+-.- ..++.+.+.|++||++++.
T Consensus 224 ~~g~-------~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 224 SVGK-------DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp CCGG-------GGHHHHHHHEEEEEEEEEC
T ss_pred CCCh-------HHHHHHHHHhccCCEEEEE
Confidence 7652 3578888999999998864
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.19 Score=43.68 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=58.9
Q ss_pred hCCCCCeEEEeCCc-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC----CCCCCceeEEEecch
Q 023470 94 MLRPGSEVLDLMSS-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL----EFDHCSFDAVVCAVS 166 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l----~~~~~s~D~v~~~~~ 166 (282)
.+.++.+||-+|+| .|....+. ..+.+|+++|.+++.++.++....-.+.+... .++ .-..+.+|+|+-+..
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~-~~~~~~~~~~~g~~d~vid~~g 241 (340)
T 3s2e_A 163 DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARD-TDPAAWLQKEIGGAHGVLVTAV 241 (340)
T ss_dssp TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTT-SCHHHHHHHHHSSEEEEEESSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCC-cCHHHHHHHhCCCCCEEEEeCC
Confidence 45678899999996 34332222 24669999999998777665443222333321 111 001135888876542
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-...++.+.+.|+|||++++.
T Consensus 242 ------~~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 242 ------SPKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp ------CHHHHHHHHHHEEEEEEEEEC
T ss_pred ------CHHHHHHHHHHhccCCEEEEe
Confidence 245788999999999998864
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=0.12 Score=45.05 Aligned_cols=94 Identities=19% Similarity=0.173 Sum_probs=60.3
Q ss_pred hCCCCCeEEEeCCcc-cc---hhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc--cCC-CC-CCCceeEEEecc
Q 023470 94 MLRPGSEVLDLMSSW-VS---HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD--QKL-EF-DHCSFDAVVCAV 165 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~--~~l-~~-~~~s~D~v~~~~ 165 (282)
.+.++.+||-+|+|. |. .+++...+.+|+++|.+++.++.+++...-.+.+...+ +.+ .. ....+|+|+-+-
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~ 247 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFV 247 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECC
Confidence 467889999999963 33 23333457899999999987766654432122222110 000 00 123699998765
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. -...++.+.+.|++||++++.
T Consensus 248 G------~~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 248 G------AQSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp C------CHHHHHHHHHHEEEEEEEEEC
T ss_pred C------CHHHHHHHHHHHhcCCEEEEE
Confidence 3 245789999999999998865
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.60 E-value=0.11 Score=45.29 Aligned_cols=94 Identities=14% Similarity=0.034 Sum_probs=58.3
Q ss_pred hCCCCCeEEEeCC-c-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCC-----CCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLE-----FDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~-----~~~~s~D~v~~~ 164 (282)
.+.++.+||-+|+ | .|....+.. .+.+|+++|.+++.++.++....-.+.|.....++. ..++.+|+|+.+
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~ 245 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINV 245 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEEC
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEEC
Confidence 4567889999999 3 454433322 467999999987665544332211233442111110 011269999987
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
... ...++.+.+.|++||++++.
T Consensus 246 ~g~------~~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 246 SVS------EAAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp SSC------HHHHHHHTTSEEEEEEEEEC
T ss_pred CCc------HHHHHHHHHHHhcCCEEEEE
Confidence 542 35789999999999998754
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=92.31 E-value=0.12 Score=45.29 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=58.2
Q ss_pred hhCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-C-CCCCceeEEEe
Q 023470 93 QMLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-E-FDHCSFDAVVC 163 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~-~~~~s~D~v~~ 163 (282)
..+.++.+||=+|+|. |.. +++..+..+|+++|.+++.++.+++..--.+.+.... +.+ . .....+|+|+-
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d 241 (352)
T 3fpc_A 162 ANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVI 241 (352)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEE
Confidence 3467889999999973 332 2333333489999999887665554332222332110 000 1 12236999997
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+-.- ...++.+.+.|+|||++++.
T Consensus 242 ~~g~------~~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 242 AGGD------VHTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp CSSC------TTHHHHHHHHEEEEEEEEEC
T ss_pred CCCC------hHHHHHHHHHHhcCCEEEEe
Confidence 6431 25678999999999998854
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=92.17 E-value=0.063 Score=46.52 Aligned_cols=92 Identities=16% Similarity=0.158 Sum_probs=57.5
Q ss_pred hCCCCCeEEEeC-Cc-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC-----C-CCCCceeEEEe
Q 023470 94 MLRPGSEVLDLM-SS-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-----E-FDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiG-cG-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-----~-~~~~s~D~v~~ 163 (282)
.+.++.+||-.| +| .|....+. ..+.+|+++|.+++.++.++....-.+.+... .++ . .....+|+|+.
T Consensus 137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~-~~~~~~~~~~~~~~g~Dvvid 215 (325)
T 3jyn_A 137 QVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSH-EDVAKRVLELTDGKKCPVVYD 215 (325)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTT-SCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCC-ccHHHHHHHHhCCCCceEEEE
Confidence 356788999999 54 44433222 24569999999988776554332222333321 111 0 12346999998
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+-.- ..+..+.+.|++||++++.
T Consensus 216 ~~g~-------~~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 216 GVGQ-------DTWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp SSCG-------GGHHHHHTTEEEEEEEEEC
T ss_pred CCCh-------HHHHHHHHHhcCCCEEEEE
Confidence 7552 3567889999999998865
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=92.16 E-value=0.064 Score=46.78 Aligned_cols=92 Identities=20% Similarity=0.125 Sum_probs=54.5
Q ss_pred hCCCCCeEEEeCCc--ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC-----C-CCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSS--WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-----E-FDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG--~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-----~-~~~~s~D~v~~ 163 (282)
.+.++.+||-+|+| .|....+. ..+.+|+++|.+++.++.+++...-.+.+... .++ . .....+|+|+.
T Consensus 141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~-~~~~~~~~~~~~~~g~Dvvid 219 (340)
T 3gms_A 141 NLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTST-APLYETVMELTNGIGADAAID 219 (340)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTT-SCHHHHHHHHTTTSCEEEEEE
T ss_pred ccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCc-ccHHHHHHHHhCCCCCcEEEE
Confidence 45678999999996 44433222 24569999999876655444322112223211 111 0 12346999998
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+-.-. .+.+..+.|++||++++.
T Consensus 220 ~~g~~-------~~~~~~~~l~~~G~iv~~ 242 (340)
T 3gms_A 220 SIGGP-------DGNELAFSLRPNGHFLTI 242 (340)
T ss_dssp SSCHH-------HHHHHHHTEEEEEEEEEC
T ss_pred CCCCh-------hHHHHHHHhcCCCEEEEE
Confidence 75522 234455899999998864
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=0.2 Score=43.58 Aligned_cols=91 Identities=14% Similarity=0.016 Sum_probs=58.4
Q ss_pred hCCCCCeEEEeCCc-ccchhhhh--cCCC-eEEEEcCCHHHHHhCCCCCceEEeecccccCCC-----CCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMSS-WVSHLPQE--VSYK-RVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLE-----FDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~~~~~~--~~~~-~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~-----~~~~s~D~v~~~ 164 (282)
.+ ++.+||-+|+| .|....+. ..+. +|+++|.+++.++.++.. .-.+.+... .++. .....+|+|+.+
T Consensus 162 ~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~-~~~~~~~~~~~~~g~D~vid~ 238 (343)
T 2dq4_A 162 GV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLE-EDLLEVVRRVTGSGVEVLLEF 238 (343)
T ss_dssp CC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTT-SCHHHHHHHHHSSCEEEEEEC
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCc-cCHHHHHHHhcCCCCCEEEEC
Confidence 45 78899999996 34332221 1455 899999999888777665 223333321 1110 002459999876
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-.- ...++.+.+.|++||++++.
T Consensus 239 ~g~------~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 239 SGN------EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp SCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCC------HHHHHHHHHHHhcCCEEEEE
Confidence 541 35678899999999998754
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=92.01 E-value=0.15 Score=44.91 Aligned_cols=93 Identities=19% Similarity=0.078 Sum_probs=57.6
Q ss_pred hCCCCCeEEEeC-Cc-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-CCCCCceeEEEecc
Q 023470 94 MLRPGSEVLDLM-SS-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-EFDHCSFDAVVCAV 165 (282)
Q Consensus 94 ~~~~~~~vLDiG-cG-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~~~~~s~D~v~~~~ 165 (282)
.+.++.+||-.| +| .|....+. ..+.+|+++|.+++.++.+++...-.+.+.... +.+ ......+|+|+.+-
T Consensus 160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~ 239 (362)
T 2c0c_A 160 GLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESV 239 (362)
T ss_dssp CCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECS
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECC
Confidence 467889999999 55 44433222 246699999999876655443321122232110 000 01124699999875
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. . ..++.+.++|++||++++.
T Consensus 240 g-----~--~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 240 G-----G--AMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp C-----T--HHHHHHHHHEEEEEEEEEC
T ss_pred C-----H--HHHHHHHHHHhcCCEEEEE
Confidence 4 1 4788999999999998764
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=92.01 E-value=0.55 Score=40.75 Aligned_cols=94 Identities=12% Similarity=0.174 Sum_probs=57.7
Q ss_pred hCCCCCeEEEeCCcc-cc---hhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-C-CCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMSSW-VS---HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-E-FDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~-~~~~s~D~v~~~ 164 (282)
.+.++.+||=+|+|. |. .+++...+.+|+++|.+++-++.++....-.+.+.... +.+ . .....+|.++..
T Consensus 160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~ 239 (348)
T 4eez_A 160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVC 239 (348)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEEC
T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEEe
Confidence 467889999999973 22 22333468899999999987765554432223333210 000 0 112346666654
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.+ -...+....+.|++||++++.
T Consensus 240 ~~------~~~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 240 AV------ARIAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp CS------CHHHHHHHHHTEEEEEEEEEC
T ss_pred cc------CcchhheeheeecCCceEEEE
Confidence 32 256788999999999998764
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.87 E-value=0.19 Score=44.38 Aligned_cols=94 Identities=12% Similarity=0.192 Sum_probs=59.6
Q ss_pred hCCCCCeEEEeCCc-ccch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeeccc-ccCC-----CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSS-WVSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ-DQKL-----EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~-~~~l-----~~~~~s~D~v~~ 163 (282)
.+.++.+||=+|+| .|.. +++..+..+|+++|.+++.++.+++..--.+.+... ..++ ...++.+|+|+-
T Consensus 190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid 269 (378)
T 3uko_A 190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFE 269 (378)
T ss_dssp CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEE
Confidence 35678899999997 3332 233334458999999988777666554222333321 0111 112236999987
Q ss_pred cchhhccCCHHHHHHHHHHcccCC-cEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPG-GVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~Lkpg-G~li~~ 193 (282)
+-. -...++.+.+.|++| |++++.
T Consensus 270 ~~g------~~~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 270 CIG------NVSVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp CSC------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred CCC------CHHHHHHHHHHhhccCCEEEEE
Confidence 643 245788999999997 998764
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=91.81 E-value=0.22 Score=43.40 Aligned_cols=94 Identities=16% Similarity=0.164 Sum_probs=58.7
Q ss_pred hhCCCCCeEEEeCCc--ccchhhhhc--C-CCeEEEEcCCHHHHHhCCCCCceEEeecccccC----C-CCCC-CceeEE
Q 023470 93 QMLRPGSEVLDLMSS--WVSHLPQEV--S-YKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQK----L-EFDH-CSFDAV 161 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG--~~~~~~~~~--~-~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~----l-~~~~-~s~D~v 161 (282)
..+.++.+||-.|+| .|....+.. . +.+|+++|.+++.++.+++...-.+.+... .+ + .... +.+|+|
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~v 244 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASM-QDPLAEIRRITESKGVDAV 244 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTT-SCHHHHHHHHTTTSCEEEE
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCC-ccHHHHHHHHhcCCCceEE
Confidence 356688999999996 344332221 3 679999999987766543322112223321 11 0 1112 479999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+.+-.- ...++.+.+.|+|||++++.
T Consensus 245 i~~~g~------~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 245 IDLNNS------EKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp EESCCC------HHHHTTGGGGEEEEEEEEEC
T ss_pred EECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 977542 44678899999999998764
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=91.72 E-value=0.1 Score=46.02 Aligned_cols=92 Identities=13% Similarity=0.051 Sum_probs=57.1
Q ss_pred hCCCCCeEEEeCCc-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC-----C-CCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMSS-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-----E-FDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-----~-~~~~s~D~v~~~ 164 (282)
.+.++.+||=+|+| .|....+. ..+.+|+++|.+++.++.++....-.+.+... .++ . .....+|+|+-+
T Consensus 186 ~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~v~~~~~g~g~D~vid~ 264 (363)
T 3uog_A 186 HLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLE-EDWVERVYALTGDRGADHILEI 264 (363)
T ss_dssp CCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTT-SCHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCc-ccHHHHHHHHhCCCCceEEEEC
Confidence 35678999999996 33322221 25679999999988776554332112222210 111 0 123369999887
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-. ...+..+.+.|+|||++++.
T Consensus 265 ~g-------~~~~~~~~~~l~~~G~iv~~ 286 (363)
T 3uog_A 265 AG-------GAGLGQSLKAVAPDGRISVI 286 (363)
T ss_dssp TT-------SSCHHHHHHHEEEEEEEEEE
T ss_pred CC-------hHHHHHHHHHhhcCCEEEEE
Confidence 54 13467888999999998865
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=91.61 E-value=0.32 Score=41.87 Aligned_cols=87 Identities=14% Similarity=0.037 Sum_probs=52.8
Q ss_pred eEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccc-cCCCCCCCceeEEEecchhhccCCHH
Q 023470 100 EVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD-QKLEFDHCSFDAVVCAVSVQYLQQPE 174 (282)
Q Consensus 100 ~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~-~~l~~~~~s~D~v~~~~~l~~~~~~~ 174 (282)
+||=.|+ | .|....+. ..+.+|+++|.|++.++.+++...-.+.+.... ....+..+.+|+|+-+-. .
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g-------~ 221 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVG-------D 221 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSC-------H
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECCC-------c
Confidence 4999998 5 34332221 245699999999876665543321122232110 111123457999887543 2
Q ss_pred HHHHHHHHcccCCcEEEEE
Q 023470 175 KVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 175 ~~l~~~~r~LkpgG~li~~ 193 (282)
..++.+.++|+|+|+++..
T Consensus 222 ~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 222 KVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp HHHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHHHHhcCCEEEEE
Confidence 3789999999999998864
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.48 E-value=0.29 Score=43.14 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=57.5
Q ss_pred hCCCCCeEEEeCCc-ccch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeeccc-ccCC-----CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSS-WVSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ-DQKL-----EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~-~~~l-----~~~~~s~D~v~~ 163 (282)
.+.++.+||-+|+| .|.. +++..+..+|+++|.+++.++.++...--.+.+... ..++ ....+.+|+|+-
T Consensus 189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid 268 (374)
T 1cdo_A 189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLE 268 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEE
Confidence 45678899999996 3332 233333348999999987776554433222333321 0011 011236899987
Q ss_pred cchhhccCCHHHHHHHHHHcccCC-cEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPG-GVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~Lkpg-G~li~~ 193 (282)
+-.- ...++.+.++|++| |++++.
T Consensus 269 ~~g~------~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 269 CVGN------VGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp CSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred CCCC------HHHHHHHHHHhhcCCcEEEEE
Confidence 6431 45688999999999 998764
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=91.37 E-value=0.28 Score=43.19 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=57.9
Q ss_pred hCCCCCeEEEeCCc-ccch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeeccc-ccCC-----CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSS-WVSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ-DQKL-----EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~-~~~l-----~~~~~s~D~v~~ 163 (282)
.+.++.+||-+|+| .|.. +++..+..+|+++|.+++.++.+++..--.+.+... +.++ ....+.+|+|+-
T Consensus 188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid 267 (373)
T 1p0f_A 188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVE 267 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEE
Confidence 45678899999997 3332 233334448999999987766554433212223211 0011 111236999987
Q ss_pred cchhhccCCHHHHHHHHHHcccCC-cEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPG-GVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~Lkpg-G~li~~ 193 (282)
+-.- ...++.+.+.|++| |++++.
T Consensus 268 ~~g~------~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 268 CAGR------IETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp CSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred CCCC------HHHHHHHHHHHhcCCCEEEEE
Confidence 6431 45688999999999 998764
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=91.37 E-value=0.2 Score=43.90 Aligned_cols=93 Identities=10% Similarity=0.045 Sum_probs=56.7
Q ss_pred hCCCCCeEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-C-CCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-E-FDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~-~~~~s~D~v~~~ 164 (282)
.+.++.+||-.|+ | .|....+. ..+.+|+++|.+++.++.++....-.+.+.... ..+ . .....+|+++.+
T Consensus 159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 238 (354)
T 2j8z_A 159 NVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDC 238 (354)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceEEEEC
Confidence 3567889999995 4 45433322 256799999999877655432221123333211 000 0 112469999987
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-.- ..+..+.++|++||++++.
T Consensus 239 ~G~-------~~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 239 IGG-------SYWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp SCG-------GGHHHHHHHEEEEEEEEEC
T ss_pred CCc-------hHHHHHHHhccCCCEEEEE
Confidence 652 2467888999999998764
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.36 E-value=0.096 Score=45.71 Aligned_cols=93 Identities=19% Similarity=0.193 Sum_probs=57.2
Q ss_pred hCCCCCeEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-C-CCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-E-FDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~-~~~~s~D~v~~~ 164 (282)
.+.++.+||-.|+ | .|....+. ..+.+|+++|.+++.++.++....-.+.+.... ..+ . .....+|+|+.+
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~ 242 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDH 242 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEES
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEEC
Confidence 3567889999999 4 45433332 246799999999877655432221122343211 001 0 112469999987
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-. . ..++.+.+.|+++|++++.
T Consensus 243 ~g-~------~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 243 TG-A------LYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp SC-S------SSHHHHHHHEEEEEEEEES
T ss_pred CC-H------HHHHHHHHhhccCCEEEEE
Confidence 65 1 2468888999999998764
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=91.22 E-value=0.29 Score=42.70 Aligned_cols=91 Identities=15% Similarity=0.190 Sum_probs=55.5
Q ss_pred CCCeEEEe-CCc-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccc--cCC-CCCCCceeEEEecchhhc
Q 023470 97 PGSEVLDL-MSS-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD--QKL-EFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 97 ~~~~vLDi-GcG-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~--~~l-~~~~~s~D~v~~~~~l~~ 169 (282)
++.+||=+ |+| .|....+. ..+.+|+++|.+++.++.+++...-.+.+...+ +.+ ....+.+|+|+.+..
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g--- 226 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFN--- 226 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSC---
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCC---
Confidence 67899999 565 34332221 256699999999877665543321122222111 000 112346999997643
Q ss_pred cCCHHHHHHHHHHcccCCcEEEEE
Q 023470 170 LQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 170 ~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-...++.+.++|++||+++..
T Consensus 227 ---~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 227 ---TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp ---HHHHHHHHHHHEEEEEEEEES
T ss_pred ---chHHHHHHHHHhccCCEEEEE
Confidence 355778999999999999753
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=90.99 E-value=0.34 Score=42.65 Aligned_cols=94 Identities=12% Similarity=0.120 Sum_probs=57.3
Q ss_pred hCCCCCeEEEeCCc-ccch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeeccc-ccCC-----CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSS-WVSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ-DQKL-----EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~-~~~l-----~~~~~s~D~v~~ 163 (282)
.+.++.+||-+|+| .|.. +++..+..+|+++|.+++.++.++....-.+.+... ..++ ...++.+|+|+-
T Consensus 188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid 267 (374)
T 2jhf_A 188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFE 267 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEE
Confidence 45678899999996 3432 233333348999999987766554333212233321 0011 111236999987
Q ss_pred cchhhccCCHHHHHHHHHHcccCC-cEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPG-GVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~Lkpg-G~li~~ 193 (282)
+-.- ...++.+.+.|++| |++++.
T Consensus 268 ~~g~------~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 268 VIGR------LDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp CSCC------HHHHHHHHHHBCTTTCEEEEC
T ss_pred CCCC------HHHHHHHHHHhhcCCcEEEEe
Confidence 6431 45678999999999 998764
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.93 E-value=0.58 Score=41.74 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=54.3
Q ss_pred CCCCCeEEEeCCc-ccch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC-----C-CCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSS-WVSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-----E-FDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG-~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-----~-~~~~s~D~v~~~ 164 (282)
+.++.+||=+|+| .|.. +++..+..+|+++|.+++.++.++....-.+.+... .++ . .....+|+|+-+
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~i~~~t~g~g~D~vid~ 289 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTK-ENFVEAVLDYTNGLGAKLFLEA 289 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTT-SCHHHHHHHHTTTCCCSEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCC-CCHHHHHHHHhCCCCCCEEEEC
Confidence 5678899999996 3332 333334449999999998776655433222223211 110 0 122369999875
Q ss_pred chhhccCCHHHHHHHHHHcc----cCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVL----KPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~L----kpgG~li~~ 193 (282)
-. .....+..+.+.| ++||++++.
T Consensus 290 ~g-----~~~~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 290 TG-----VPQLVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp SS-----CHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred CC-----CcHHHHHHHHHHHHhccCCCcEEEEe
Confidence 43 3333444555555 999998864
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=0.36 Score=42.54 Aligned_cols=94 Identities=14% Similarity=0.114 Sum_probs=57.3
Q ss_pred hCCCCCeEEEeCCc-ccch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeeccc-ccCC-----CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSS-WVSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ-DQKL-----EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~-~~~l-----~~~~~s~D~v~~ 163 (282)
.+.++.+||-+|+| .|.. +++..+..+|+++|.+++.++.++...--.+.+... ..++ ....+.+|+|+-
T Consensus 192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid 271 (376)
T 1e3i_A 192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLD 271 (376)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEE
Confidence 45678899999997 3332 233333348999999987766554433212233221 0011 011236899987
Q ss_pred cchhhccCCHHHHHHHHHHcccCC-cEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPG-GVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~Lkpg-G~li~~ 193 (282)
+-.- ...++.+.+.|++| |++++.
T Consensus 272 ~~G~------~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 272 CAGT------AQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp SSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred CCCC------HHHHHHHHHHhhcCCCEEEEE
Confidence 6431 45788999999999 998754
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.58 E-value=0.18 Score=43.59 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=56.7
Q ss_pred hCCCCCeEEEeCC-c-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-C-CCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-E-FDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~-~~~~s~D~v~~~ 164 (282)
.+.++.+||-.|+ | .|....+.. .+.+|+++|.+++.++.++....-.+.+.... ..+ . .....+|+++.+
T Consensus 137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 216 (327)
T 1qor_A 137 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDS 216 (327)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEEC
Confidence 3567889999994 4 454433322 45699999999876654432221122333211 000 0 112469999987
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-. ...++.+.+.|++||++++.
T Consensus 217 ~g-------~~~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 217 VG-------RDTWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp SC-------GGGHHHHHHTEEEEEEEEEC
T ss_pred Cc-------hHHHHHHHHHhcCCCEEEEE
Confidence 65 24578899999999998764
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.50 E-value=0.84 Score=39.50 Aligned_cols=94 Identities=7% Similarity=0.003 Sum_probs=59.6
Q ss_pred hhCCCCCeEEEeCCcc-cc---hhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc------cCCCCCCCceeEEE
Q 023470 93 QMLRPGSEVLDLMSSW-VS---HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD------QKLEFDHCSFDAVV 162 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG~-~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~------~~l~~~~~s~D~v~ 162 (282)
..+.++.+||=.|+|. |. .+++..+...++++|.+++-++.+++...-.+.+.... ..+. ....+|+|+
T Consensus 156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~-~~~g~d~v~ 234 (346)
T 4a2c_A 156 AQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLR-ELRFNQLIL 234 (346)
T ss_dssp TTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHG-GGCSSEEEE
T ss_pred hccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhc-ccCCccccc
Confidence 3466889999999973 32 23344466678999999987776665543233333210 0011 123478877
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
..-. -...++.+.++|++||.+++.
T Consensus 235 d~~G------~~~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 235 ETAG------VPQTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp ECSC------SHHHHHHHHHHCCTTCEEEEC
T ss_pred cccc------ccchhhhhhheecCCeEEEEE
Confidence 6542 256788899999999998864
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=90.48 E-value=0.14 Score=44.45 Aligned_cols=45 Identities=29% Similarity=0.426 Sum_probs=33.2
Q ss_pred CCCCceeEEEec--chhh------------ccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 153 FDHCSFDAVVCA--VSVQ------------YLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 153 ~~~~s~D~v~~~--~~l~------------~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+++++||+|++. +... ++......+++++|+|||||.+++.+.+.
T Consensus 29 l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~ 87 (323)
T 1boo_A 29 FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA 87 (323)
T ss_dssp SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred CCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence 457889999988 3221 22245678999999999999999986643
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=90.36 E-value=0.11 Score=45.65 Aligned_cols=95 Identities=13% Similarity=0.014 Sum_probs=55.6
Q ss_pred hhCCCCCeEEEeCCc-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeeccccc-CC--CCCCCceeEEEecch
Q 023470 93 QMLRPGSEVLDLMSS-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQ-KL--EFDHCSFDAVVCAVS 166 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~-~l--~~~~~s~D~v~~~~~ 166 (282)
..+.++.+||-+|+| .|....+. ..+.+|+++|.|++.++.++....-.+.+... . ++ .+. +.+|+|+.+-.
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~-~~~~~~~~~-~~~D~vid~~g 252 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLE-EGDWGEKYF-DTFDLIVVCAS 252 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGG-TSCHHHHSC-SCEEEEEECCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcC-chHHHHHhh-cCCCEEEECCC
Confidence 356788999999996 34332221 13568999999876655443322112223211 1 11 011 46999997754
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-. ....++.+.++|++||+++..
T Consensus 253 ~~----~~~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 253 SL----TDIDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp CS----TTCCTTTGGGGEEEEEEEEEC
T ss_pred CC----cHHHHHHHHHHhcCCCEEEEe
Confidence 20 012346778999999998754
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=90.26 E-value=0.21 Score=43.48 Aligned_cols=92 Identities=14% Similarity=0.105 Sum_probs=57.3
Q ss_pred hCCCCCeEEEeCCc-ccch---hhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeeccc--c--cCCCCCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMSS-WVSH---LPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ--D--QKLEFDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~~---~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~--~--~~l~~~~~s~D~v~~~ 164 (282)
.+ ++.+||-+|+| .|.. +++.. ++.+|+++|.|++.++.+++...-.+.+... + ..+. ....+|+|+-+
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~-~g~g~D~vid~ 245 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLT-DGLGASIAIDL 245 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHH-TTCCEEEEEES
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhh-cCCCccEEEEC
Confidence 56 88999999996 3332 23332 2679999999987766554322111222211 0 1111 12369999987
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-.- ...++.+.++|+|||++++.
T Consensus 246 ~g~------~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 246 VGT------EETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp SCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCC------hHHHHHHHHHhhcCCEEEEe
Confidence 542 34788999999999998764
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=90.22 E-value=0.26 Score=43.08 Aligned_cols=93 Identities=16% Similarity=0.088 Sum_probs=57.3
Q ss_pred hCCCC--CeEEEeCC-c-ccchhhhh--cCCC-eEEEEcCCHHHHHhCCC-CCceEEeecccc---cCC-CCCCCceeEE
Q 023470 94 MLRPG--SEVLDLMS-S-WVSHLPQE--VSYK-RVVGHGLNAQELAKNPR-LEYFIVKDLNQD---QKL-EFDHCSFDAV 161 (282)
Q Consensus 94 ~~~~~--~~vLDiGc-G-~~~~~~~~--~~~~-~v~giD~s~~~l~~~~~-~~~~~~~d~~~~---~~l-~~~~~s~D~v 161 (282)
.+.++ .+||-.|+ | .|....+. ..+. +|+++|.+++.++.+++ ...-.+.+.... ..+ ....+.+|++
T Consensus 155 ~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~d~v 234 (357)
T 2zb4_A 155 HITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVY 234 (357)
T ss_dssp CCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCEEEE
T ss_pred CCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCCCEE
Confidence 46678 89999998 4 44433322 2456 99999999876544332 221123343211 000 0111269999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+.+-. ...++.+.++|++||++++.
T Consensus 235 i~~~G-------~~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 235 FDNVG-------GNISDTVISQMNENSHIILC 259 (357)
T ss_dssp EESCC-------HHHHHHHHHTEEEEEEEEEC
T ss_pred EECCC-------HHHHHHHHHHhccCcEEEEE
Confidence 98765 25788999999999998764
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.18 E-value=0.15 Score=44.78 Aligned_cols=92 Identities=14% Similarity=0.029 Sum_probs=56.8
Q ss_pred hCCCCCeEEEeC-Cc-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC-----CCCCCceeEEEec
Q 023470 94 MLRPGSEVLDLM-SS-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-----EFDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiG-cG-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-----~~~~~s~D~v~~~ 164 (282)
.+.++.+||-.| +| .|....+. ..+.+|+++|.+++.++.+++...-.+.+... .++ ....+.+|+|+.+
T Consensus 164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~-~~~~~~~~~~~~~g~Dvvid~ 242 (353)
T 4dup_A 164 GLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRS-EDFAAVIKAETGQGVDIILDM 242 (353)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTT-SCHHHHHHHHHSSCEEEEEES
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCc-hHHHHHHHHHhCCCceEEEEC
Confidence 356788999995 44 44433222 25679999999998776554332222333311 110 0013469999987
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-.- ..+..+.+.|++||++++.
T Consensus 243 ~g~-------~~~~~~~~~l~~~G~iv~~ 264 (353)
T 4dup_A 243 IGA-------AYFERNIASLAKDGCLSII 264 (353)
T ss_dssp CCG-------GGHHHHHHTEEEEEEEEEC
T ss_pred CCH-------HHHHHHHHHhccCCEEEEE
Confidence 652 2568889999999998764
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=90.13 E-value=0.49 Score=42.99 Aligned_cols=92 Identities=15% Similarity=0.059 Sum_probs=57.3
Q ss_pred hCCCCCeEEEeCC-c-ccchhhh--hcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCC-----------------
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQ--EVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLE----------------- 152 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~--~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~----------------- 152 (282)
.+.++.+||=+|+ | .|....+ ...+.++++++.+++-++.++....-.+.+... .++.
T Consensus 225 ~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~~vi~~~~-~d~~~~~~~~~~~~~~~~~~~ 303 (456)
T 3krt_A 225 GMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAIIDRNA-EGYRFWKDENTQDPKEWKRFG 303 (456)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCCEEEETTT-TTCCSEEETTEECHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCcEEEecCc-CcccccccccccchHHHHHHH
Confidence 4567889999998 5 3332222 125679999999988776554332112222211 1110
Q ss_pred ------CCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 153 ------FDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 153 ------~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.....+|+|+-+-. ...+..+.++|++||++++.
T Consensus 304 ~~i~~~t~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 304 KRIRELTGGEDIDIVFEHPG-------RETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHHTSCCEEEEEECSC-------HHHHHHHHHHEEEEEEEEES
T ss_pred HHHHHHhCCCCCcEEEEcCC-------chhHHHHHHHhhCCcEEEEE
Confidence 01246999987654 25678899999999998864
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=90.05 E-value=0.64 Score=40.61 Aligned_cols=91 Identities=16% Similarity=0.116 Sum_probs=55.9
Q ss_pred hCCCC------CeEEEeCCc-ccchh----h-hhcCCCeEEEEcCCHH---HHHhCCCCCceEEeecccccCC----CCC
Q 023470 94 MLRPG------SEVLDLMSS-WVSHL----P-QEVSYKRVVGHGLNAQ---ELAKNPRLEYFIVKDLNQDQKL----EFD 154 (282)
Q Consensus 94 ~~~~~------~~vLDiGcG-~~~~~----~-~~~~~~~v~giD~s~~---~l~~~~~~~~~~~~d~~~~~~l----~~~ 154 (282)
.+.++ .+||-+|+| .|... + +..+..+|+++|.+++ .++.+++...-.+ +... .++ ..
T Consensus 163 ~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v-~~~~-~~~~~i~~~- 239 (357)
T 2b5w_A 163 YASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV-DSRQ-TPVEDVPDV- 239 (357)
T ss_dssp HHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE-ETTT-SCGGGHHHH-
T ss_pred CCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc-CCCc-cCHHHHHHh-
Confidence 45577 899999996 33322 2 3333334999999876 5555444332223 4321 111 01
Q ss_pred CCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 155 HCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 155 ~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.+.+|+|+-+-. . ...++.+.++|++||++++.
T Consensus 240 ~gg~Dvvid~~g-----~-~~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 240 YEQMDFIYEATG-----F-PKHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp SCCEEEEEECSC-----C-HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEECCC-----C-hHHHHHHHHHHhcCCEEEEE
Confidence 236999987643 1 34678999999999998764
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=90.04 E-value=0.11 Score=44.79 Aligned_cols=85 Identities=16% Similarity=0.055 Sum_probs=51.4
Q ss_pred hCCCCCeEEEeCCc-ccch---hhhhcCCCeEEEEcCCHHHHHhCCCCC-ceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 94 MLRPGSEVLDLMSS-WVSH---LPQEVSYKRVVGHGLNAQELAKNPRLE-YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
.++++.+||=+|+| .|.. +++. .+.+|++++ |++.++.+++.. ...+.| .+.+ .+.+|+|+-+-.-
T Consensus 139 ~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d---~~~v---~~g~Dvv~d~~g~- 209 (315)
T 3goh_A 139 PLTKQREVLIVGFGAVNNLLTQMLNN-AGYVVDLVS-ASLSQALAAKRGVRHLYRE---PSQV---TQKYFAIFDAVNS- 209 (315)
T ss_dssp CCCSCCEEEEECCSHHHHHHHHHHHH-HTCEEEEEC-SSCCHHHHHHHTEEEEESS---GGGC---CSCEEEEECC----
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH-cCCEEEEEE-ChhhHHHHHHcCCCEEEcC---HHHh---CCCccEEEECCCc-
Confidence 35578999999996 3332 2332 355999999 876655544332 111212 1334 4679999976542
Q ss_pred ccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 169 YLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
..+..+.++|+|||+++..
T Consensus 210 ------~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 210 ------QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp ----------TTGGGEEEEEEEEEE
T ss_pred ------hhHHHHHHHhcCCCEEEEE
Confidence 1236678999999998865
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=90.03 E-value=0.35 Score=42.59 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=57.0
Q ss_pred hCCCCCeEEEeCCc-ccch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeeccc-ccCC-----CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSS-WVSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ-DQKL-----EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~-~~~l-----~~~~~s~D~v~~ 163 (282)
.+.++.+||-+|+| .|.. +++..+..+|+++|.|++.++.++....-.+.+... ..++ ....+.+|+|+-
T Consensus 187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid 266 (373)
T 2fzw_A 187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFE 266 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEE
Confidence 45678899999996 3332 233334448999999987765544322112223211 0011 011236999987
Q ss_pred cchhhccCCHHHHHHHHHHcccCC-cEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPG-GVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~Lkpg-G~li~~ 193 (282)
+-.- ...++.+.+.|++| |++++.
T Consensus 267 ~~g~------~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 267 CIGN------VKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp CSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred CCCc------HHHHHHHHHhhccCCcEEEEE
Confidence 6431 45688999999999 998764
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=90.00 E-value=0.18 Score=43.75 Aligned_cols=93 Identities=14% Similarity=0.156 Sum_probs=56.7
Q ss_pred hCCCCCeEEEeCC-c-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-C-CCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-E-FDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~-~~~~s~D~v~~~ 164 (282)
.+.++.+||-.|+ | .|....+.. .+.+|+++|.+++.++.++....-.+.+.... ..+ . .....+|+|+.+
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~ 221 (333)
T 1wly_A 142 KVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDS 221 (333)
T ss_dssp CCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCeEEEEC
Confidence 3567889999996 3 554433322 56799999999876554432221122333211 000 0 112369999987
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-.- ..++.+.++|++||+++..
T Consensus 222 ~g~-------~~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 222 IGK-------DTLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp SCT-------TTHHHHHHTEEEEEEEEEC
T ss_pred CcH-------HHHHHHHHhhccCCEEEEE
Confidence 552 4578889999999998764
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=89.89 E-value=0.13 Score=44.78 Aligned_cols=93 Identities=22% Similarity=0.163 Sum_probs=56.2
Q ss_pred hCCCCCeEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccc--cCC-C-CCCCceeEEEecc
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD--QKL-E-FDHCSFDAVVCAV 165 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~--~~l-~-~~~~s~D~v~~~~ 165 (282)
.+.++.+||=.|+ | .|....+. ..+.+|++++.+++.++.++....-.+.+...+ +.+ . .....+|+|+.+-
T Consensus 156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~ 235 (342)
T 4eye_A 156 QLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPI 235 (342)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECC
Confidence 3567889999998 4 44333222 246799999998876655443221122232111 000 0 1223699999876
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.- ..+..+.+.|++||++++.
T Consensus 236 g~-------~~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 236 GG-------PAFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp C---------CHHHHHHTEEEEEEEEEC
T ss_pred ch-------hHHHHHHHhhcCCCEEEEE
Confidence 52 2568889999999998864
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=89.78 E-value=0.13 Score=43.94 Aligned_cols=87 Identities=22% Similarity=0.177 Sum_probs=54.6
Q ss_pred CCCCCeEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeeccc-c---cCCCCCCCceeEEEecch
Q 023470 95 LRPGSEVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ-D---QKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 95 ~~~~~~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~-~---~~l~~~~~s~D~v~~~~~ 166 (282)
+.++.+||-+|+ | .|....+. ..+.+|+++|.+++.++.++....-.+.+... . ..+ +.+|+|+. ..
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~----~~~d~vid-~g 197 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAW----GGLDLVLE-VR 197 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHT----TSEEEEEE-CS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHh----cCceEEEE-CC
Confidence 678899999998 4 44433222 24569999999876554443322112233321 0 112 46999987 43
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
- ..++.+.+.|++||+++..
T Consensus 198 ~-------~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 198 G-------KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp C-------TTHHHHHTTEEEEEEEEEC
T ss_pred H-------HHHHHHHHhhccCCEEEEE
Confidence 1 3578899999999998753
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=89.63 E-value=0.46 Score=41.40 Aligned_cols=90 Identities=12% Similarity=0.027 Sum_probs=55.5
Q ss_pred CCCeEEEeCCc-ccchhhhh--cCCC-eEEEEcCCHHHHHhCCCCCceEEeecccccCC-----CC-CCCceeEEEecch
Q 023470 97 PGSEVLDLMSS-WVSHLPQE--VSYK-RVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-----EF-DHCSFDAVVCAVS 166 (282)
Q Consensus 97 ~~~~vLDiGcG-~~~~~~~~--~~~~-~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-----~~-~~~s~D~v~~~~~ 166 (282)
++.+||-+|+| .|....+. ..+. +|+++|.+++.++.+++...-.+.+... .++ .. ....+|+|+.+-.
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~-~~~~~~v~~~~~g~g~D~vid~~g 245 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFE-EDVVKEVMDITDGNGVDVFLEFSG 245 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTT-SCHHHHHHHHTTTSCEEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCC-cCHHHHHHHHcCCCCCCEEEECCC
Confidence 78899999996 34332222 1345 9999999987766544322112223211 111 01 1235999987654
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. ...++.+.+.|++||+++..
T Consensus 246 ~------~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 246 A------PKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp C------HHHHHHHHHHEEEEEEEEEC
T ss_pred C------HHHHHHHHHHHhcCCEEEEE
Confidence 1 45678899999999998764
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=89.51 E-value=0.76 Score=34.25 Aligned_cols=96 Identities=8% Similarity=-0.051 Sum_probs=58.3
Q ss_pred CCeEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCC-CCceEEeecccccCCC-CCCCceeEEEecchhhccCC
Q 023470 98 GSEVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPR-LEYFIVKDLNQDQKLE-FDHCSFDAVVCAVSVQYLQQ 172 (282)
Q Consensus 98 ~~~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~-~~~~~~~d~~~~~~l~-~~~~s~D~v~~~~~l~~~~~ 172 (282)
..+|+=+||| .|..++... .+.+|+++|.+++.++..+. ......+|......+. ..-..+|+|++... +
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~-----~ 81 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIP-----N 81 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCS-----C
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECC-----C
Confidence 3579999998 455555443 57899999999988765433 2345566653321111 11246888887532 3
Q ss_pred HHH--HHHHHHHcccCCcEEEEEEcCch
Q 023470 173 PEK--VFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 173 ~~~--~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
... .+-...|.+.|+..++....++.
T Consensus 82 ~~~n~~~~~~a~~~~~~~~iiar~~~~~ 109 (140)
T 3fwz_A 82 GYEAGEIVASARAKNPDIEIIARAHYDD 109 (140)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEEESSHH
T ss_pred hHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 332 34446677788888777665543
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.35 E-value=0.31 Score=42.00 Aligned_cols=93 Identities=22% Similarity=0.076 Sum_probs=53.1
Q ss_pred hCCCCC-eEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccc--cC-CCCCCCceeEEEecc
Q 023470 94 MLRPGS-EVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD--QK-LEFDHCSFDAVVCAV 165 (282)
Q Consensus 94 ~~~~~~-~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~--~~-l~~~~~s~D~v~~~~ 165 (282)
.+.++. +||-+|+ | .|....+. ..+.+|++++.+++.++.++....-.+.+.... .. .....+.+|+|+-+-
T Consensus 145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~ 224 (328)
T 1xa0_A 145 GLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPV 224 (328)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECS
T ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECC
Confidence 355664 8999998 5 34332221 245689999998765544333221112222110 00 112234699998765
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. . ..+..+.+.|++||++++.
T Consensus 225 g-----~--~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 225 G-----G--RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp T-----T--TTHHHHHHTEEEEEEEEEC
T ss_pred c-----H--HHHHHHHHhhccCCEEEEE
Confidence 4 1 2578889999999998764
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.32 E-value=0.36 Score=42.12 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=31.8
Q ss_pred CCCCCeEEEeCCcccchh---hhhc-CCCeEEEEcCCHHHHHhCC
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEV-SYKRVVGHGLNAQELAKNP 135 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~-~~~~v~giD~s~~~l~~~~ 135 (282)
+.++..++|..||.|.+. +... +..+|+|+|.++.+++.++
T Consensus 55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~ 99 (347)
T 3tka_A 55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 99 (347)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 457889999999987543 3332 5689999999999998764
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.27 E-value=0.32 Score=43.05 Aligned_cols=93 Identities=12% Similarity=0.126 Sum_probs=57.1
Q ss_pred CCCCCeEEEeCCc-ccch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecc---c-c--cCC-CC-CCCceeEEE
Q 023470 95 LRPGSEVLDLMSS-WVSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLN---Q-D--QKL-EF-DHCSFDAVV 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG-~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~---~-~--~~l-~~-~~~s~D~v~ 162 (282)
+.++.+||-+|+| .|.. +++..+..+|+++|.|++.++.+++...-.+.+.. . + +.+ .. ....+|+|+
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvi 272 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 272 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEE
Confidence 5678899999996 3433 23322326999999999877655543321222321 1 0 011 01 123699998
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-+-.- ...++.+.++|++||+++..
T Consensus 273 d~~g~------~~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 273 EATGD------SRALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp ECSSC------TTHHHHHHHHEEEEEEEEEC
T ss_pred ECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 76531 24678899999999998754
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=88.83 E-value=0.26 Score=42.46 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=27.1
Q ss_pred CCCCceeEEEecchhhccCCH----HHHHHHHHHcccCCcEEE
Q 023470 153 FDHCSFDAVVCAVSVQYLQQP----EKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 153 ~~~~s~D~v~~~~~l~~~~~~----~~~l~~~~r~LkpgG~li 191 (282)
+.+..+|+++.-. +.--.+| +.+++.++++++|||.+.
T Consensus 182 l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~la 223 (308)
T 3vyw_A 182 VENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWV 223 (308)
T ss_dssp CCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEE
T ss_pred hcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEE
Confidence 3445799998753 2222233 469999999999999876
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=88.53 E-value=0.67 Score=40.70 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=54.2
Q ss_pred hCC-CCCeEEEeCCc-ccchhhhh--cCCCeEEEEcCCHHHHHhCC-CCCceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 94 MLR-PGSEVLDLMSS-WVSHLPQE--VSYKRVVGHGLNAQELAKNP-RLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 94 ~~~-~~~~vLDiGcG-~~~~~~~~--~~~~~v~giD~s~~~l~~~~-~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
.+. ++.+||=+|+| .|....+. ..+.+|+++|.+++.++.+. ....-.+.+......+.-..+.+|+|+.+-...
T Consensus 183 ~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~ 262 (366)
T 1yqd_A 183 GLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAV 262 (366)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSC
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcH
Confidence 455 78899999996 34332222 24569999999987655433 222112223221111100013699999775422
Q ss_pred ccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 169 YLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
..++.+.+.|++||+++..
T Consensus 263 ------~~~~~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 263 ------HPLLPLFGLLKSHGKLILV 281 (366)
T ss_dssp ------CCSHHHHHHEEEEEEEEEC
T ss_pred ------HHHHHHHHHHhcCCEEEEE
Confidence 1246778899999998754
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=88.09 E-value=0.43 Score=41.78 Aligned_cols=92 Identities=18% Similarity=0.087 Sum_probs=53.5
Q ss_pred hCC-CCCeEEEeCCc-ccch---hhhhcCCCeEEEEcCCHHHHHhCC-CCCceEEeecccccCC-CCCCCceeEEEecch
Q 023470 94 MLR-PGSEVLDLMSS-WVSH---LPQEVSYKRVVGHGLNAQELAKNP-RLEYFIVKDLNQDQKL-EFDHCSFDAVVCAVS 166 (282)
Q Consensus 94 ~~~-~~~~vLDiGcG-~~~~---~~~~~~~~~v~giD~s~~~l~~~~-~~~~~~~~d~~~~~~l-~~~~~s~D~v~~~~~ 166 (282)
.+. ++.+||=+|+| .|.. +++. .+.+|+++|.+++.++.++ ....-.+.+......+ .. .+.+|+|+-+-.
T Consensus 176 ~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~-~~g~D~vid~~g 253 (357)
T 2cf5_A 176 GLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSEL-ADSLDYVIDTVP 253 (357)
T ss_dssp STTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHS-TTTEEEEEECCC
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHh-cCCCCEEEECCC
Confidence 456 78899999996 3332 2222 3569999999876654433 2221112222110011 11 135999987654
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-. ..++.+.++|+|||+++..
T Consensus 254 ~~------~~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 254 VH------HALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp SC------CCSHHHHTTEEEEEEEEEC
T ss_pred Ch------HHHHHHHHHhccCCEEEEe
Confidence 21 1346778899999998764
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=88.09 E-value=0.67 Score=41.85 Aligned_cols=92 Identities=18% Similarity=0.016 Sum_probs=56.6
Q ss_pred hCCCCCeEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCC-----------------
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLE----------------- 152 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~----------------- 152 (282)
.+.++.+||=.|+ | .|....+. ..+.++++++.+++.++.++....-.+.+... .++.
T Consensus 217 ~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~ 295 (447)
T 4a0s_A 217 QMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAE-LGITDDIADDPRRVVETGRKL 295 (447)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHH-HTCCTTGGGCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeccc-ccccccccccccccchhhhHH
Confidence 4567899999998 5 34332222 25679999999988776554332111222110 1110
Q ss_pred ------CCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 153 ------FDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 153 ------~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.....+|+|+.+-.- ..++...+.|++||++++.
T Consensus 296 ~~~v~~~~g~g~Dvvid~~G~-------~~~~~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 296 AKLVVEKAGREPDIVFEHTGR-------VTFGLSVIVARRGGTVVTC 335 (447)
T ss_dssp HHHHHHHHSSCCSEEEECSCH-------HHHHHHHHHSCTTCEEEES
T ss_pred HHHHHHHhCCCceEEEECCCc-------hHHHHHHHHHhcCCEEEEE
Confidence 002458999886552 3678888999999998864
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=87.84 E-value=1 Score=38.57 Aligned_cols=92 Identities=17% Similarity=0.057 Sum_probs=53.2
Q ss_pred hhCCCCCeEEEeC-Cc-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccC-CCCCCCceeEEEecchh
Q 023470 93 QMLRPGSEVLDLM-SS-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQK-LEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 93 ~~~~~~~~vLDiG-cG-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~-l~~~~~s~D~v~~~~~l 167 (282)
..+.++.+||=+| +| .|....+. ..+.+|++++ +++.++.+++..--.+.+... .+ +.-.-..+|+|+-+-.
T Consensus 148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~lGa~~~i~~~~-~~~~~~~~~g~D~v~d~~g- 224 (321)
T 3tqh_A 148 AEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKALGAEQCINYHE-EDFLLAISTPVDAVIDLVG- 224 (321)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHHTCSEEEETTT-SCHHHHCCSCEEEEEESSC-
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHcCCCEEEeCCC-cchhhhhccCCCEEEECCC-
Confidence 3567889999997 76 34322221 2466999997 444455444322112233311 11 1111146999987654
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
...+..+.++|++||+++..
T Consensus 225 ------~~~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 225 ------GDVGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp ------HHHHHHHGGGEEEEEEEEEC
T ss_pred ------cHHHHHHHHhccCCCEEEEe
Confidence 22348899999999998865
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=87.77 E-value=2 Score=32.39 Aligned_cols=99 Identities=12% Similarity=0.008 Sum_probs=55.1
Q ss_pred CCCeEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCC-CCC-ceEEeecccccCCC-CCCCceeEEEecchhhcc
Q 023470 97 PGSEVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNP-RLE-YFIVKDLNQDQKLE-FDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 97 ~~~~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~-~~~-~~~~~d~~~~~~l~-~~~~s~D~v~~~~~l~~~ 170 (282)
++.+|+=+||| .|..++... .+.+|+++|.+++.++..+ ... .....+......+. ..-..+|+|+.+..-.
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~-- 95 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDD-- 95 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCH--
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCc--
Confidence 56789999998 455444332 5679999999988776655 332 23334432111111 1123588888764311
Q ss_pred CCHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 171 QQPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 171 ~~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
.....+..+.+.+.+...++....++.
T Consensus 96 -~~~~~~~~~~~~~~~~~~iv~~~~~~~ 122 (155)
T 2g1u_A 96 -STNFFISMNARYMFNVENVIARVYDPE 122 (155)
T ss_dssp -HHHHHHHHHHHHTSCCSEEEEECSSGG
T ss_pred -HHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 112244445555566666666654443
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=87.74 E-value=0.32 Score=42.00 Aligned_cols=93 Identities=19% Similarity=0.085 Sum_probs=53.7
Q ss_pred hCCCCC-eEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeeccc--ccC-CCCCCCceeEEEecc
Q 023470 94 MLRPGS-EVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQ--DQK-LEFDHCSFDAVVCAV 165 (282)
Q Consensus 94 ~~~~~~-~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~--~~~-l~~~~~s~D~v~~~~ 165 (282)
.+.++. +||=.|+ | .|....+. ..+.+|++++.+++.++.+++...-.+.+... ... .....+.+|+|+.+-
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~ 225 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPV 225 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESC
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECC
Confidence 355664 8999998 5 34332221 13568999999865544333221111222211 011 112234699998765
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. . ..+..+.+.|++||++++.
T Consensus 226 g-----~--~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 226 G-----G--KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp C-----T--HHHHHHHTTEEEEEEEEEC
T ss_pred c-----H--HHHHHHHHhhcCCCEEEEE
Confidence 4 2 3688999999999998764
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=87.47 E-value=2.3 Score=36.99 Aligned_cols=96 Identities=10% Similarity=0.065 Sum_probs=57.5
Q ss_pred CCCeEEEeCCcccchhhhh---cCCCeEEEEcCCHHHHHh-------C----------------------CCCCceEEee
Q 023470 97 PGSEVLDLMSSWVSHLPQE---VSYKRVVGHGLNAQELAK-------N----------------------PRLEYFIVKD 144 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~---~~~~~v~giD~s~~~l~~-------~----------------------~~~~~~~~~d 144 (282)
+...|+.+|||......+. .+...++-+|. ++.++. . .....++-.|
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 5678999999965433222 24677888888 544421 1 1122344556
Q ss_pred cccc-------cCCCCCCCceeEEEecchhhccC--CHHHHHHHHHHcccCCcEEE-EEEc
Q 023470 145 LNQD-------QKLEFDHCSFDAVVCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFI-VSFS 195 (282)
Q Consensus 145 ~~~~-------~~l~~~~~s~D~v~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li-~~~~ 195 (282)
+... ...+ ..+...++++-.++.+++ ....+++.+.+.+ |+|.++ ++..
T Consensus 176 L~d~~w~~~ll~~~~-d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i 234 (334)
T 1rjd_A 176 LNDITETTRLLDVCT-KREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPI 234 (334)
T ss_dssp TTCHHHHHHHHHTTC-CTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred CCCcHHHHHHHHhcC-CCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEecc
Confidence 5331 1122 334578899999999996 3334788888776 677764 5543
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.03 E-value=0.51 Score=41.60 Aligned_cols=92 Identities=18% Similarity=0.095 Sum_probs=53.1
Q ss_pred CCCCCeEEEeC-Cc-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCCCCCCCceeEEEecchh
Q 023470 95 LRPGSEVLDLM-SS-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 95 ~~~~~~vLDiG-cG-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l~~~~~s~D~v~~~~~l 167 (282)
+.++.+||=.| +| .|....+. ..+.+|++++ +++.++.+++...-.+.+.... +.+. ....+|+|+-+-.
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~~~~~~~~~~~~-~~~g~D~vid~~g- 257 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGADDVIDYKSGSVEEQLK-SLKPFDFILDNVG- 257 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTSSCHHHHHH-TSCCBSEEEESSC-
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCCCEEEECCchHHHHHHh-hcCCCCEEEECCC-
Confidence 56788999999 55 34332221 2457999998 6555544433321122333210 0111 1145899987644
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.....+....++|++||+++..
T Consensus 258 ----~~~~~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 258 ----GSTETWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp ----TTHHHHGGGGBCSSSCCEEEES
T ss_pred ----ChhhhhHHHHHhhcCCcEEEEe
Confidence 2224567788999999998764
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=86.47 E-value=0.64 Score=40.68 Aligned_cols=95 Identities=16% Similarity=0.131 Sum_probs=56.8
Q ss_pred hhCCCCCeEEEeCCc-ccch---hhhhcCCCeEEEEcCCHHHHHhCCCCC-ceEEeeccc----c--cCC-C-CCCCcee
Q 023470 93 QMLRPGSEVLDLMSS-WVSH---LPQEVSYKRVVGHGLNAQELAKNPRLE-YFIVKDLNQ----D--QKL-E-FDHCSFD 159 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG-~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~~----~--~~l-~-~~~~s~D 159 (282)
..+.++.+||=+|+| .|.. +++..+...|+++|.+++.++.++... ......... + +.+ . .....+|
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~D 254 (363)
T 3m6i_A 175 AGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPA 254 (363)
T ss_dssp HTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCC
Confidence 356788899999996 3332 333334445999999997765544321 111111100 0 001 0 1234699
Q ss_pred EEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 160 AVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 160 ~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+|+-+-. -...++.+.++|++||++++.
T Consensus 255 vvid~~g------~~~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 255 VALECTG------VESSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp EEEECSC------CHHHHHHHHHHSCTTCEEEEC
T ss_pred EEEECCC------ChHHHHHHHHHhcCCCEEEEE
Confidence 9987653 245678999999999998864
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=86.00 E-value=1.3 Score=38.84 Aligned_cols=53 Identities=8% Similarity=-0.102 Sum_probs=35.5
Q ss_pred chhHHHHHHHHHHhhCC----CCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHH
Q 023470 80 DGGFISTLTNLYRQMLR----PGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELA 132 (282)
Q Consensus 80 ~~~~~~~~~~~~~~~~~----~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~ 132 (282)
+....+.+.+.+.-.-. ++..|||||.|.|....... ...+|+++++++..+.
T Consensus 37 d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~ 96 (353)
T 1i4w_A 37 NPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYK 96 (353)
T ss_dssp CHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHH
T ss_pred CHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHH
Confidence 44666666666532111 35789999999886544433 3568999999998663
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=85.54 E-value=1.5 Score=34.12 Aligned_cols=95 Identities=14% Similarity=0.046 Sum_probs=54.8
Q ss_pred CCeEEEeCCc-ccchhhhhc--C-CCeEEEEcCCHHHHHhCCCC-CceEEeecccccCC-CC-CCCceeEEEecchhhcc
Q 023470 98 GSEVLDLMSS-WVSHLPQEV--S-YKRVVGHGLNAQELAKNPRL-EYFIVKDLNQDQKL-EF-DHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 98 ~~~vLDiGcG-~~~~~~~~~--~-~~~v~giD~s~~~l~~~~~~-~~~~~~d~~~~~~l-~~-~~~s~D~v~~~~~l~~~ 170 (282)
+.+|+=+||| .|..++... . +.+|+++|.+++.++..+.. .....+|......+ .. .-..+|+|+....
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~---- 114 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMP---- 114 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS----
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC----
Confidence 5679999998 455444432 4 67999999999876543322 23445555321111 11 1245888887532
Q ss_pred CCHHH--HHHHHHHcccCCcEEEEEEcCc
Q 023470 171 QQPEK--VFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 171 ~~~~~--~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+... .+-...+.+.|++.++....++
T Consensus 115 -~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 142 (183)
T 3c85_A 115 -HHQGNQTALEQLQRRNYKGQIAAIAEYP 142 (183)
T ss_dssp -SHHHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred -ChHHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 2222 3334566667777887765544
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=85.48 E-value=0.52 Score=39.50 Aligned_cols=40 Identities=8% Similarity=0.101 Sum_probs=28.0
Q ss_pred CCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 154 DHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 154 ~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+..++|+|..-.- +-..-...++.+...|+|||.+++..-
T Consensus 179 ~~~~~dlv~ID~D--~Y~~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 179 PQTVIALAYFDLD--LYEPTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp TTCCEEEEEECCC--CHHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred CCCceEEEEEcCc--ccchHHHHHHHHHHHhCCCcEEEEcCC
Confidence 3456888877652 111234578899999999999998743
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=85.32 E-value=0.48 Score=41.03 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=30.3
Q ss_pred CCCceeEEEec--chhh---------ccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 154 DHCSFDAVVCA--VSVQ---------YLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 154 ~~~s~D~v~~~--~~l~---------~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++++||+|++. +... ++......+.++.|+|||||.+++....
T Consensus 55 ~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~ 108 (319)
T 1eg2_A 55 PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL 108 (319)
T ss_dssp CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred ccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCc
Confidence 45678888876 2211 2223456889999999999999998654
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=85.24 E-value=0.84 Score=39.49 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=33.6
Q ss_pred HHhhCCCCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCC
Q 023470 91 YRQMLRPGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNP 135 (282)
Q Consensus 91 ~~~~~~~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~ 135 (282)
+.....++..|||.-||.|..+... .-+.+.+|+|+++...+.++
T Consensus 246 i~~~~~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~ 291 (323)
T 1boo_A 246 IRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASA 291 (323)
T ss_dssp HHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHhCCCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHH
Confidence 3444568899999999987654333 35789999999998876544
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=84.00 E-value=0.44 Score=41.94 Aligned_cols=69 Identities=19% Similarity=0.071 Sum_probs=45.0
Q ss_pred CCCeEEEeCCc-ccchhhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecc
Q 023470 97 PGSEVLDLMSS-WVSHLPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 97 ~~~~vLDiGcG-~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
+.++||=+||| .|...+... ...+|+..|.+.+.+++.+........|+.+...+.-.-..+|+|++.-
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~ 85 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLKDEFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGAL 85 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred CccEEEEECCCHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEec
Confidence 46789999998 455444332 5678999999999888877766656666533222211113579988873
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=83.43 E-value=1.9 Score=31.77 Aligned_cols=95 Identities=17% Similarity=0.072 Sum_probs=54.5
Q ss_pred CCeEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCC-CCceEEeecccccCCC-CCCCceeEEEecchhhccCC
Q 023470 98 GSEVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPR-LEYFIVKDLNQDQKLE-FDHCSFDAVVCAVSVQYLQQ 172 (282)
Q Consensus 98 ~~~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~-~~~~~~~d~~~~~~l~-~~~~s~D~v~~~~~l~~~~~ 172 (282)
..+|+=+||| .|..++... .+.+|+++|.+++.++..+. ...+..+|......+. ..-..+|+|+.... +
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~-----~ 80 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS-----D 80 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS-----C
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC-----C
Confidence 3579999998 455554433 57899999999987754332 2345566664321111 12245788887543 3
Q ss_pred HHH--HHHHHHHcccCCcEEEEEEcCch
Q 023470 173 PEK--VFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 173 ~~~--~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
.+. .+....+-+. .+.++....++.
T Consensus 81 ~~~n~~~~~~a~~~~-~~~iia~~~~~~ 107 (141)
T 3llv_A 81 DEFNLKILKALRSVS-DVYAIVRVSSPK 107 (141)
T ss_dssp HHHHHHHHHHHHHHC-CCCEEEEESCGG
T ss_pred HHHHHHHHHHHHHhC-CceEEEEEcChh
Confidence 322 3444445555 566666555443
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=83.41 E-value=1 Score=39.16 Aligned_cols=89 Identities=19% Similarity=0.096 Sum_probs=55.1
Q ss_pred hCCCCCeEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCC------CCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLE------FDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~------~~~~s~D~v~~ 163 (282)
.+.++.+||-+|+ | .|....+. ..+.+|+++ .+++.++.++....-. .+.. .++. .....+|+|+-
T Consensus 147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~~-i~~~--~~~~~~~~~~~~~~g~D~vid 222 (343)
T 3gaz_A 147 QVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGATP-IDAS--REPEDYAAEHTAGQGFDLVYD 222 (343)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSEE-EETT--SCHHHHHHHHHTTSCEEEEEE
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCCE-eccC--CCHHHHHHHHhcCCCceEEEE
Confidence 3557889999995 4 44333222 256799999 8887766554332111 2211 1110 12246999987
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+-. ...+..+.+.|++||+++..
T Consensus 223 ~~g-------~~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 223 TLG-------GPVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp SSC-------THHHHHHHHHEEEEEEEEES
T ss_pred CCC-------cHHHHHHHHHHhcCCeEEEE
Confidence 654 24678899999999998864
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=82.68 E-value=2.4 Score=38.02 Aligned_cols=97 Identities=12% Similarity=0.061 Sum_probs=61.7
Q ss_pred CCCeEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCC-CCceEEeecccccCCC-CCCCceeEEEecchhhccC
Q 023470 97 PGSEVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPR-LEYFIVKDLNQDQKLE-FDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 97 ~~~~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~-~~~~~~~d~~~~~~l~-~~~~s~D~v~~~~~l~~~~ 171 (282)
.+.+|+=+||| .|..++... .+..|+++|.+++.++..+. ....+.+|......|. ..-...|+|++..-
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~----- 77 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID----- 77 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCS-----
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCC-----
Confidence 34679999998 455554433 57899999999998865443 2345677764432121 12245788877542
Q ss_pred CHHH--HHHHHHHcccCCcEEEEEEcCch
Q 023470 172 QPEK--VFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 172 ~~~~--~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
+.+. .+....|-+.|...++.-..++.
T Consensus 78 ~~~~n~~i~~~ar~~~p~~~Iiara~~~~ 106 (413)
T 3l9w_A 78 DPQTNLQLTEMVKEHFPHLQIIARARDVD 106 (413)
T ss_dssp SHHHHHHHHHHHHHHCTTCEEEEEESSHH
T ss_pred ChHHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence 4443 55667777889888887765543
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=81.16 E-value=2.8 Score=35.97 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=51.3
Q ss_pred CeEEEeCCc-ccchhhhhc--CCC--eEEEEcCCHHHHHhCCCCCc--eEEeecccccCCCCCCCceeEEEecchhhccC
Q 023470 99 SEVLDLMSS-WVSHLPQEV--SYK--RVVGHGLNAQELAKNPRLEY--FIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 99 ~~vLDiGcG-~~~~~~~~~--~~~--~v~giD~s~~~l~~~~~~~~--~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~ 171 (282)
.+|.=||+| .|..++... .+. +|+++|.+++.++.+..... ....+. .++ .-...|+|+.+--..
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~---~~~--~~~~aDvVilavp~~--- 105 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSI---AKV--EDFSPDFVMLSSPVR--- 105 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCT---TGG--GGGCCSEEEECSCGG---
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCH---HHH--hhccCCEEEEeCCHH---
Confidence 578999998 454443322 444 89999999987765433221 111222 110 113478888764333
Q ss_pred CHHHHHHHHHHcccCCcEEE
Q 023470 172 QPEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 172 ~~~~~l~~~~r~LkpgG~li 191 (282)
....+++++...|+||..++
T Consensus 106 ~~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 106 TFREIAKKLSYILSEDATVT 125 (314)
T ss_dssp GHHHHHHHHHHHSCTTCEEE
T ss_pred HHHHHHHHHhhccCCCcEEE
Confidence 23668889988899887554
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=81.08 E-value=1.9 Score=37.71 Aligned_cols=88 Identities=15% Similarity=0.042 Sum_probs=52.1
Q ss_pred CCeEEEeCCc-ccchhhhhc--CCCeEEEEcCCH---HHHHhCCCCCceEEeecccc--cCCCCCCCceeEEEecchhhc
Q 023470 98 GSEVLDLMSS-WVSHLPQEV--SYKRVVGHGLNA---QELAKNPRLEYFIVKDLNQD--QKLEFDHCSFDAVVCAVSVQY 169 (282)
Q Consensus 98 ~~~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~---~~l~~~~~~~~~~~~d~~~~--~~l~~~~~s~D~v~~~~~l~~ 169 (282)
+.+||-+|+| .|....+.. .+.+|+++|.++ +.++.++....-.+ + ..+ +.+.-..+.+|+|+.+-..
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v-~-~~~~~~~~~~~~~~~d~vid~~g~-- 256 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYY-N-SSNGYDKLKDSVGKFDVIIDATGA-- 256 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEE-E-CTTCSHHHHHHHCCEEEEEECCCC--
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCcee-c-hHHHHHHHHHhCCCCCEEEECCCC--
Confidence 8899999995 343332221 345999999987 55544432221122 3 210 0000001469999887542
Q ss_pred cCCHHHHH-HHHHHcccCCcEEEEE
Q 023470 170 LQQPEKVF-AEVFRVLKPGGVFIVS 193 (282)
Q Consensus 170 ~~~~~~~l-~~~~r~LkpgG~li~~ 193 (282)
...+ +.+.+.|++||++++.
T Consensus 257 ----~~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 257 ----DVNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp ----CTHHHHHHGGGEEEEEEEEEC
T ss_pred ----hHHHHHHHHHHHhcCCEEEEE
Confidence 1245 8899999999998764
|
| >2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.90 E-value=0.93 Score=33.95 Aligned_cols=43 Identities=19% Similarity=0.391 Sum_probs=32.8
Q ss_pred CCCCCCCceeEEEecchhh--ccCCHHHHHHHHHHcccCCcEEEE
Q 023470 150 KLEFDHCSFDAVVCAVSVQ--YLQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 150 ~l~~~~~s~D~v~~~~~l~--~~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
...+++++||.|+...--. +..-+..++..++..|||||.|..
T Consensus 52 ~VsLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 52 SITLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp CCCCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred cccCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe
Confidence 3456789999998874322 233348899999999999999986
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 282 | ||||
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 1e-08 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 6e-08 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 5e-07 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 9e-07 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 2e-06 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-06 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 7e-06 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 7e-06 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 1e-05 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 2e-05 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 2e-05 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 1e-04 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 6e-04 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 8e-04 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 0.001 | |
| d2nxca1 | 254 | c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT | 0.002 |
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 52.1 bits (123), Expect = 1e-08
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 1/112 (0%)
Query: 87 LTNLYRQMLRPGSEVLDLMS-SWVSHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDL 145
+ + + L+ VLDL + L + VV + + L V +
Sbjct: 32 IGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEA 91
Query: 146 NQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197
+ + + Y++ +K F+E+ RVL P G+ I + N
Sbjct: 92 KAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 143
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 50.1 bits (118), Expect = 6e-08
Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 8/156 (5%)
Query: 66 DRDFYAYPRFVTHVDGGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEVSYKRVVG-- 123
R F Y + I TL L + ++ +VLDL Y V
Sbjct: 6 YRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGV 65
Query: 124 ---HGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL--QQPEKVFA 178
+ + E + + +KL F+ +FD V+ S+ + + +VF
Sbjct: 66 DISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFK 125
Query: 179 EVFRVLKPGGVFIVSFSN-RMFYEKAISAWRDGTAY 213
EV RVLKP G FI+ F++ R + + G Y
Sbjct: 126 EVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKY 161
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 47.3 bits (111), Expect = 5e-07
Identities = 22/152 (14%), Positives = 44/152 (28%), Gaps = 19/152 (12%)
Query: 95 LRPGSEVLDLMSSW---VSHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL 151
++PG+ +LDL S + ++ G +++ A+ R +
Sbjct: 31 MKPGTRILDLGSGSGEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIH 89
Query: 152 EF-----DHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISA 206
+ D C + + + LKPGG+ ++
Sbjct: 90 NDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY---------- 139
Query: 207 WRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKL 238
WR A + + T P +V
Sbjct: 140 WRQLPATEEIAQACGVSSTSDFLTLPGLVGAF 171
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 46.6 bits (109), Expect = 9e-07
Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 7/115 (6%)
Query: 95 LRPGSEVLDLMSSWVSHLPQEVSYKR----VVGHGLNAQELAKNPRLEYFIVKDLNQDQK 150
R VLDL + + H + + + ++ L D
Sbjct: 39 KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVL 98
Query: 151 LEFDHCSFDAVVCAVSVQYL---QQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEK 202
FDAV S + K+F++V LKPGGVFI F + +
Sbjct: 99 EIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGR 153
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 46.0 bits (108), Expect = 2e-06
Identities = 30/169 (17%), Positives = 59/169 (34%), Gaps = 13/169 (7%)
Query: 83 FISTLTNLYRQMLRPGSEVLDL-------MSSWVSHLPQEVSYKRVVGHGLNAQELAKNP 135
++S L N ++ +P ++D + LP+ Y + E +
Sbjct: 14 YVSFLVNTVWKITKPVH-IVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELF 72
Query: 136 RLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS-- 193
RL + + L D + +D +C + ++ PE + ++ +K GG I
Sbjct: 73 RLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP 132
Query: 194 --FSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKLPA 240
SN Y + G +Q + + G + I K+P
Sbjct: 133 HWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGK-DGNIGMKIPI 180
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.2 bits (109), Expect = 2e-06
Identities = 23/171 (13%), Positives = 43/171 (25%), Gaps = 29/171 (16%)
Query: 72 YPRFVTHVDGGFISTLTNLYRQMLR-----PGSEVLDLMSSW---VSHLPQEVSYKRVVG 123
Y F +V G L N + + G +DL S V E G
Sbjct: 189 YKAFSNYVYG---ELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFG 245
Query: 124 HGLN------AQELAKN---------PRLEYFIVKDLNQDQKLEFDHCSFDA--VVCAVS 166
+ + RL V+ +
Sbjct: 246 CEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN 305
Query: 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQ 217
+ + K ++ + K G I+S + I+ + + R++
Sbjct: 306 FLFDEDLNKKVEKILQTAKVGC-KIISLKSLRSLTYQINFYNVENIFNRLK 355
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 43.8 bits (102), Expect = 7e-06
Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 19/142 (13%)
Query: 63 TYSDRDFYA--YPRFVTHVDGGFISTLTNLYRQMLRPGSEVLDL------MSSWVSHLPQ 114
T D +++ Y TH D ++ +++ PG LDL S +++
Sbjct: 2 TVRDENYFTEKYGLTRTHSD--VLAAA-----KVVAPGR-TLDLGCGNGRNSLYLAANGY 53
Query: 115 EVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPE 174
+V+ + E K + DL L F +D ++ V + +L+
Sbjct: 54 DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLEAQT 112
Query: 175 --KVFAEVFRVLKPGGVFIVSF 194
+ A + R KPGG ++
Sbjct: 113 IPGLIANMQRCTKPGGYNLIVA 134
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (104), Expect = 7e-06
Identities = 24/147 (16%), Positives = 42/147 (28%), Gaps = 26/147 (17%)
Query: 70 YAYPRFVTHVDGGFISTLTNLYRQMLR-----PGSEVLDLMS---SWVSHLPQEVSYKRV 121
Y F V G T +L QM+ +DL S V + + K
Sbjct: 122 NNYEPFSPEVYGE---TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHH 178
Query: 122 VGHGLN-------------AQELAKNPRLEYFIVKDLNQD-QKLEFDHCSFDA-VVCAVS 166
G ++ K ++ D E+ + V+ +
Sbjct: 179 YGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNN 238
Query: 167 VQYLQQPEKVFAEVFRVLKPGGVFIVS 193
+ + + E F +K GG + S
Sbjct: 239 FAFGPEVDHQLKERFANMKEGGRIVSS 265
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.8 bits (102), Expect = 1e-05
Identities = 14/132 (10%), Positives = 33/132 (25%), Gaps = 8/132 (6%)
Query: 145 LNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGV-FIVSFSNRMFYEKA 203
+ + +D + + Y++ +L I+ S ++K
Sbjct: 111 YQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKL 170
Query: 204 ISAWRDGTAYGRVQLVVQYFQCVE-----GYTNPEIVRKLPADSAAAQEDKSPISWLMRL 258
+ + + + G D + D + L
Sbjct: 171 WKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYDLLSTMDISDCFIDGNE--NGDLL 228
Query: 259 LGFLSGSDPFYA 270
FL+ + F A
Sbjct: 229 WDFLTETCNFNA 240
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 43.0 bits (100), Expect = 2e-05
Identities = 32/207 (15%), Positives = 64/207 (30%), Gaps = 14/207 (6%)
Query: 54 TNEGRTKLNTYSDRDFYAYPRFV-THVDGGFISTLTNLYRQML-RPGSEVLDLMS---SW 108
R++ S A F+ + R+ L + VLD+ +
Sbjct: 39 VQHKRSRDPGDSAEMMQARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYY 98
Query: 109 VSHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168
+ G ++ + + + + +L F S DA++ +
Sbjct: 99 THAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC 158
Query: 169 YLQQPEKVFAEVFRVLKPGGVFIVSFSN-RMFYEKAISAWRDGTAYGRVQLVVQYFQCVE 227
+ E+ RV+KPGG I + R E + + + ++ F +
Sbjct: 159 KAE-------ELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQ 211
Query: 228 GYTNPEIVRKLPADSAAAQEDKSPISW 254
+L D A A +P +W
Sbjct: 212 S-AELCYPMRLRGDEAVALLQMTPFAW 237
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.0 bits (100), Expect = 2e-05
Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 10/81 (12%)
Query: 127 NAQELAKNPRLEYFIV---KDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP-------EKV 176
K P + +++ L D+ + + S +L
Sbjct: 97 ERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLA 156
Query: 177 FAEVFRVLKPGGVFIVSFSNR 197
+ +++PGG+ ++ N
Sbjct: 157 LKNIASMVRPGGLLVIDHRNY 177
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 39.9 bits (92), Expect = 1e-04
Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 6/105 (5%)
Query: 95 LRPGSEVLDL------MSSWVSHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD 148
R VLD+ + S QE + + +
Sbjct: 14 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA 73
Query: 149 QKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193
+ L F SFD + C + + K EV RVLK G F++
Sbjct: 74 ESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLV 118
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 6e-04
Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 13/115 (11%)
Query: 90 LYRQMLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLN--------AQELAKNPRLEYFI 141
L G VL++ + + ++ A +
Sbjct: 46 LAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIP 105
Query: 142 VKDLNQDQKLEFDHCSFD-----AVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFI 191
+K L +D FD + + Q + FR+LKPGGV
Sbjct: 106 LKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT 160
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (87), Expect = 8e-04
Identities = 26/138 (18%), Positives = 39/138 (28%), Gaps = 29/138 (21%)
Query: 95 LRPGSEVLDLMS---SWVSHLPQEVSYKRVV--------------------GHGLNAQEL 131
+ PG VL+ S L + V + V +
Sbjct: 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHV 155
Query: 132 AKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFI 191
+ P FI KD+ + +FDAV + P + LK GGV
Sbjct: 156 EEWPDNVDFIHKDI-SGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCA 209
Query: 192 VSFSNRMFYEKAISAWRD 209
V N + + R
Sbjct: 210 VYVVNITQVIELLDGIRT 227
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 37.0 bits (85), Expect = 0.001
Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 9/134 (6%)
Query: 80 DGGFISTLTNLYRQMLRPGSEVLDL---MSSWVSHLPQEVSYK-RVVGHGLNAQELAKNP 135
D +I + R LRPG ++L++ + S++ ++ K + + L K
Sbjct: 73 DASYI-----IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAM 127
Query: 136 RLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195
N + + + P ++ ++KPG V
Sbjct: 128 DNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLP 187
Query: 196 NRMFYEKAISAWRD 209
N EK + +
Sbjct: 188 NFDQSEKTVLSLSA 201
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Score = 36.4 bits (83), Expect = 0.002
Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 1/104 (0%)
Query: 91 YRQMLRPGSEVLDLMSSWVSHLPQEVSY-KRVVGHGLNAQELAKNPRLEYFIVKDLNQDQ 149
+ LRPG +VLDL + + +G ++ L + +
Sbjct: 114 LARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLE 173
Query: 150 KLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193
F V+ Y + + L PGG +++
Sbjct: 174 GSLEAALPFGPFDLLVANLYAELHAALAPRYREALVPGGRALLT 217
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 282 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.84 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.84 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.84 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.83 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.83 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.83 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.81 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.81 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.78 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.76 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.73 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.72 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.69 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.69 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.69 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.68 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.66 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.64 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.64 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.64 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.63 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.62 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.59 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.56 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.56 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.54 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.54 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.49 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.49 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.48 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.48 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.47 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.46 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.46 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.46 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.43 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.41 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.39 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.39 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.37 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.35 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.34 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.34 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.26 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.22 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.21 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.21 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.2 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.15 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.1 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.04 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.03 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.97 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.87 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.87 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.76 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.72 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.7 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.65 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.56 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.54 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.51 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.48 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.46 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.45 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.3 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.3 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.27 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.22 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.21 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.2 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.15 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.13 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.1 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.08 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.06 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.97 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.91 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.8 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.74 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.72 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.71 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.7 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.67 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.66 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.65 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.64 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.61 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.56 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.49 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.36 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.24 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.2 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.16 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.12 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.04 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.83 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.46 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.35 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.33 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.29 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.17 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.16 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.16 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.05 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.92 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 95.8 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 95.74 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.67 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 95.66 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.52 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.22 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 95.08 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.87 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.69 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.52 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 93.99 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 93.54 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.1 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 92.98 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 92.89 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 92.44 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 91.7 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 91.3 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 90.81 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.72 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 90.68 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 89.84 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 86.62 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 86.4 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 85.69 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 85.23 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 85.07 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 84.04 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 83.79 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 81.69 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 81.04 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 80.71 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 80.46 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.84 E-value=1.2e-21 Score=163.09 Aligned_cols=99 Identities=23% Similarity=0.364 Sum_probs=82.4
Q ss_pred hCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCC--------CCCceEEeecccccCCCCCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNP--------RLEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~--------~~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++++.+|||||||+|....... .+.+|+|+|+|+.|++.++ .+..+.+++. +++++++++||+|+|.
T Consensus 12 ~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~---~~l~~~~~~fD~v~~~ 88 (231)
T d1vl5a_ 12 ALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA---EQMPFTDERFHIVTCR 88 (231)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC----CCCSCTTCEEEEEEE
T ss_pred CCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccccccccccc---cccccccccccccccc
Confidence 56788999999999986543322 4679999999999997653 2235777777 7899999999999999
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+++||++|++.++++++|+|||||++++...
T Consensus 89 ~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~ 119 (231)
T d1vl5a_ 89 IAAHHFPNPASFVSEAYRVLKKGGQLLLVDN 119 (231)
T ss_dssp SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9999999999999999999999999998643
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=6e-21 Score=156.45 Aligned_cols=105 Identities=18% Similarity=0.297 Sum_probs=87.7
Q ss_pred HHHHHhhCCCCCeEEEeCCcccchhhhhcCCCeEEEEcCCHHHHHhCCCC-CceEEeecccccCCCCCCCceeEEEecch
Q 023470 88 TNLYRQMLRPGSEVLDLMSSWVSHLPQEVSYKRVVGHGLNAQELAKNPRL-EYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 88 ~~~~~~~~~~~~~vLDiGcG~~~~~~~~~~~~~v~giD~s~~~l~~~~~~-~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
...+.... ++.+|||||||+|..+... .+++|+|+|+.|++.++.. ..+...+. +++++++++||+|+|.++
T Consensus 28 ~~~~~~~~-~~~~vLDiGcG~G~~~~~~---~~~~giD~s~~~~~~a~~~~~~~~~~d~---~~l~~~~~~fD~I~~~~~ 100 (208)
T d1vlma_ 28 LQAVKCLL-PEGRGVEIGVGTGRFAVPL---KIKIGVEPSERMAEIARKRGVFVLKGTA---ENLPLKDESFDFALMVTT 100 (208)
T ss_dssp HHHHHHHC-CSSCEEEETCTTSTTHHHH---TCCEEEESCHHHHHHHHHTTCEEEECBT---TBCCSCTTCEEEEEEESC
T ss_pred HHHHHhhC-CCCeEEEECCCCccccccc---ceEEEEeCChhhcccccccccccccccc---cccccccccccccccccc
Confidence 34444443 5668999999999766553 3579999999999887643 56778887 788999999999999999
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEEcCchh
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMF 199 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~ 199 (282)
|+|++|+..++++++|+|||||.+++.+++...
T Consensus 101 l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~ 133 (208)
T d1vlma_ 101 ICFVDDPERALKEAYRILKKGGYLIVGIVDRES 133 (208)
T ss_dssp GGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSS
T ss_pred cccccccccchhhhhhcCCCCceEEEEecCCcc
Confidence 999999999999999999999999999887654
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.84 E-value=5.1e-21 Score=158.23 Aligned_cols=112 Identities=32% Similarity=0.389 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC-------CCceEEeecccccCCCCC
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQDQKLEFD 154 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~~~~l~~~ 154 (282)
.+..+..++.+.++++.+|||||||+|....... .+.+|+|+|+|+.|++.+++ ...+...|. .+++++
T Consensus 23 ~~~~~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~---~~l~~~ 99 (226)
T d1ve3a1 23 RIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDA---RKLSFE 99 (226)
T ss_dssp HHHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT---TSCCSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcccccccccccccc---cccccc
Confidence 3455666777888999999999999987544332 57899999999999976642 234555566 788999
Q ss_pred CCceeEEEecchhhccC--CHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 155 HCSFDAVVCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 155 ~~s~D~v~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+++||+|+|.++++|++ ++..++++++|+|||||++++.+++.
T Consensus 100 ~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~~ 144 (226)
T d1ve3a1 100 DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL 144 (226)
T ss_dssp TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcCc
Confidence 99999999999999997 66779999999999999999987653
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.83 E-value=2.5e-21 Score=161.79 Aligned_cols=99 Identities=21% Similarity=0.229 Sum_probs=83.6
Q ss_pred hCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.++++.+|||||||+|....... .+.+|+|+|+|+.|++.|++ +..+..+|. +++++++++||+|+|.
T Consensus 13 ~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~ 89 (234)
T d1xxla_ 13 ECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA---ESLPFPDDSFDIITCR 89 (234)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT---TBCCSCTTCEEEEEEE
T ss_pred CCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccccccccccccc---ccccccccccceeeee
Confidence 46799999999999987554332 45799999999999976542 345677777 7899999999999999
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
++++|++|++.++++++|+|||||++++...
T Consensus 90 ~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~ 120 (234)
T d1xxla_ 90 YAAHHFSDVRKAVREVARVLKQDGRFLLVDH 120 (234)
T ss_dssp SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeecccCHHHHHHHHHHeeCCCcEEEEEEc
Confidence 9999999999999999999999999988643
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=8.5e-21 Score=158.86 Aligned_cols=111 Identities=22% Similarity=0.250 Sum_probs=91.3
Q ss_pred HHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC--CceEEeecccccCCCCCCCceeEEE
Q 023470 86 TLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL--EYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 86 ~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~--~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
.+...+.+.++++.+|||+|||+|....... .+.+|+|+|+|+.|++.++.. ..+..++. +++++++++||+|+
T Consensus 31 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~---~~l~~~~~~fD~ii 107 (246)
T d2avna1 31 LIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKA---EDLPFPSGAFEAVL 107 (246)
T ss_dssp HHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCT---TSCCSCTTCEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEECCCCchhcccccccceEEEEeecccccccccccccccccccccc---ccccccccccccee
Confidence 3445566678888999999999987654432 577999999999999877643 34566666 78999999999999
Q ss_pred ec-chhhccCCHHHHHHHHHHcccCCcEEEEEEcCchh
Q 023470 163 CA-VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMF 199 (282)
Q Consensus 163 ~~-~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~ 199 (282)
|. .++||++|++.+|+++.|+|||||.+++++++...
T Consensus 108 ~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~~~ 145 (246)
T d2avna1 108 ALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYT 145 (246)
T ss_dssp ECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHHH
T ss_pred eecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECCHHH
Confidence 86 68999999999999999999999999999987533
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=1.1e-20 Score=161.13 Aligned_cols=169 Identities=15% Similarity=0.109 Sum_probs=123.9
Q ss_pred ccccCCCCcCCccccccccccccCchhhcccCCCCCccccccccccc-ccchhHHHHHHHHHHhhCC-CCCeEEEeCCcc
Q 023470 31 STLNDSNNETKQSSAGKIKREVLTNEGRTKLNTYSDRDFYAYPRFVT-HVDGGFISTLTNLYRQMLR-PGSEVLDLMSSW 108 (282)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~ 108 (282)
..+.|.+.|.++....+|.+.............++.+.+.++..+.. +....+.+.+...+...++ ++.+|||||||+
T Consensus 16 ~~l~C~~~h~fd~~~~Gy~~ll~~~~~~~~~~~~~~~~~~ar~~~l~~g~~~~l~~~~~~~l~~~~~~~~~~iLDiGcG~ 95 (268)
T d1p91a_ 16 NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDSAEMMQARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGE 95 (268)
T ss_dssp TEEECTTCCEEEBCTTSCEECSCSSSSCSCCCSSSHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSCTTCCEEEEETCTT
T ss_pred CeEECCCCCccccccCceEecccccccccCCCCCCHHHHHHHHHHHHcCchHHHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 34678878887777778888766555555555565555444444432 2223345555555655544 568999999998
Q ss_pred cchh---hhhcCCCeEEEEcCCHHHHHhCC---CCCceEEeecccccCCCCCCCceeEEEecchhhccCCHHHHHHHHHH
Q 023470 109 VSHL---PQEVSYKRVVGHGLNAQELAKNP---RLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFR 182 (282)
Q Consensus 109 ~~~~---~~~~~~~~v~giD~s~~~l~~~~---~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r 182 (282)
|... +...++.+++|+|+|+.|++.++ ....+.++|+ .++|+++++||+|++.++++|+ +|++|
T Consensus 96 G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~---~~l~~~~~sfD~v~~~~~~~~~-------~e~~r 165 (268)
T d1p91a_ 96 GYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASS---HRLPFSDTSMDAIIRIYAPCKA-------EELAR 165 (268)
T ss_dssp STTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCT---TSCSBCTTCEEEEEEESCCCCH-------HHHHH
T ss_pred cHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeeh---hhccCCCCCEEEEeecCCHHHH-------HHHHH
Confidence 8754 33346789999999999997665 3456778888 8899999999999999998874 78999
Q ss_pred cccCCcEEEEEEcCchhHHHHHHhhhc
Q 023470 183 VLKPGGVFIVSFSNRMFYEKAISAWRD 209 (282)
Q Consensus 183 ~LkpgG~li~~~~~~~~~~~~~~~~~~ 209 (282)
+|||||.+++++|++....+.+..+..
T Consensus 166 vLkpgG~l~~~~p~~~~l~el~~~~~~ 192 (268)
T d1p91a_ 166 VVKPGGWVITATPGPRHLMELKGLIYN 192 (268)
T ss_dssp HEEEEEEEEEEEECTTTTHHHHTTTCS
T ss_pred HhCCCcEEEEEeeCCcchHHHHHHhhc
Confidence 999999999999998777776665543
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.81 E-value=7.9e-20 Score=151.77 Aligned_cols=150 Identities=9% Similarity=0.094 Sum_probs=102.7
Q ss_pred HHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC----CCceEEeecccccCCCCCCCceeEEEecc
Q 023470 91 YRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR----LEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 91 ~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~----~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
+.... ++.+|||||||+|..+.... .+.+|+|+|+|++|++.++. ...+..+++ +++++ +++||+|+|..
T Consensus 15 ~~~~~-~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~---~~~~~-~~~fD~I~~~~ 89 (225)
T d2p7ia1 15 FTPFF-RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRF---EDAQL-PRRYDNIVLTH 89 (225)
T ss_dssp HGGGC-CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCG---GGCCC-SSCEEEEEEES
T ss_pred hhhhC-CCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccccccccccccc---ccccc-ccccccccccc
Confidence 33343 45689999999997655443 46799999999999987642 345566666 55655 57899999999
Q ss_pred hhhccCCHHHHHHHHH-HcccCCcEEEEEEcCchhHHHHHHhhhcCCCCcch-hhHHHHHHhhCCCCchHHhhcCCCCcc
Q 023470 166 SVQYLQQPEKVFAEVF-RVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRV-QLVVQYFQCVEGYTNPEIVRKLPADSA 243 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~-r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gF~~~ei~~~~~~~g~ 243 (282)
+|+|++|+..++++++ |+|||||.+++++|+..........|......... ...........-|+..++...+..+||
T Consensus 90 vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf 169 (225)
T d2p7ia1 90 VLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 169 (225)
T ss_dssp CGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred eeEecCCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCC
Confidence 9999999999999998 89999999999999976665554444322211111 111111112234555666666666666
Q ss_pred cc
Q 023470 244 AA 245 (282)
Q Consensus 244 ~~ 245 (282)
..
T Consensus 170 ~i 171 (225)
T d2p7ia1 170 QV 171 (225)
T ss_dssp EE
T ss_pred EE
Confidence 33
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.81 E-value=7.7e-20 Score=156.88 Aligned_cols=98 Identities=18% Similarity=0.136 Sum_probs=82.4
Q ss_pred CCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
++++.+|||||||+|...... ..+.+|+|+|+|+.|++.++. +..+..+|. .++|+++++||+|+|
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~---~~l~~~~~sfD~V~~ 141 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF---LEIPCEDNSYDFIWS 141 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT---TSCSSCTTCEEEEEE
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccc---ccccccccccchhhc
Confidence 568899999999988643322 246799999999999865542 345677777 789999999999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
..+++|++++..++++++|+|||||++++..+
T Consensus 142 ~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 142 QDAFLHSPDKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp ESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhhhccCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99999999999999999999999999998754
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.78 E-value=5.2e-19 Score=146.63 Aligned_cols=162 Identities=12% Similarity=0.140 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchh---hhh--cCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccC
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHL---PQE--VSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQK 150 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~---~~~--~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~ 150 (282)
..+.+...+...++++.+|||+|||+|... +.. .++.+|+|+|+|+.|++.|++. ..+..... ..
T Consensus 25 ~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~---d~ 101 (225)
T d1im8a_ 25 IITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCN---DI 101 (225)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECS---CT
T ss_pred HHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccc---hh
Confidence 445566666778889999999999998643 332 2688999999999999876532 12222222 33
Q ss_pred CCCCCCceeEEEecchhhccC--CHHHHHHHHHHcccCCcEEEEEEcC---chhH----HHHHHhhhcCCCCcchhhHHH
Q 023470 151 LEFDHCSFDAVVCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIVSFSN---RMFY----EKAISAWRDGTAYGRVQLVVQ 221 (282)
Q Consensus 151 l~~~~~s~D~v~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~ 221 (282)
.+++.+.+|+|+|++++||++ ++..++++++|+|||||.+++..+. .... ......|....++........
T Consensus 102 ~~~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (225)
T d1im8a_ 102 RHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQK 181 (225)
T ss_dssp TTCCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHH
T ss_pred hccccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHH
Confidence 445567899999999999995 7788999999999999999987432 1111 111122222222222111111
Q ss_pred --HHH-hhCCCCchHHhhcCCCCcccccc
Q 023470 222 --YFQ-CVEGYTNPEIVRKLPADSAAAQE 247 (282)
Q Consensus 222 --~~~-~~~gF~~~ei~~~~~~~g~~~~~ 247 (282)
.+. ...-++..++...+.++||...+
T Consensus 182 ~~~~~~~~~~~s~~~~~~~L~~aGF~~v~ 210 (225)
T d1im8a_ 182 RTALENVMRTDSIETHKVRLKNVGFSQVE 210 (225)
T ss_dssp HHHHHHHCCCCCHHHHHHHHHHHTCSEEE
T ss_pred HHHhhcccCCCCHHHHHHHHHHcCCCceE
Confidence 111 22456777888888888887655
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=2.6e-19 Score=150.35 Aligned_cols=98 Identities=20% Similarity=0.193 Sum_probs=80.6
Q ss_pred CCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
+.++.+|||||||+|...... ..+++|+|+|+|+.|++.+++ +.++..+|. .++ +++++||+|+|
T Consensus 31 l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~---~~~-~~~~~fD~v~~ 106 (245)
T d1nkva_ 31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA---AGY-VANEKCDVAAC 106 (245)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC---TTC-CCSSCEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHH---hhc-cccCceeEEEE
Confidence 678999999999988643322 246899999999999976542 235677776 565 46789999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
..+++|++|+..++++++|+|||||++++..+.
T Consensus 107 ~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~ 139 (245)
T d1nkva_ 107 VGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY 139 (245)
T ss_dssp ESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred EehhhccCCHHHHHHHHHHHcCcCcEEEEEecc
Confidence 999999999999999999999999999998653
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.73 E-value=2.5e-18 Score=144.96 Aligned_cols=108 Identities=21% Similarity=0.265 Sum_probs=83.3
Q ss_pred HHHhhCCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCC-CCCc
Q 023470 90 LYRQMLRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEF-DHCS 157 (282)
Q Consensus 90 ~~~~~~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~-~~~s 157 (282)
++...++++.+|||||||+|..+.... +..+|+|+|+|+.|++.|+. ...+.++|+ ...++ .+++
T Consensus 17 lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~---~~~~~~~~~~ 93 (252)
T d1ri5a_ 17 LIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS---YGRHMDLGKE 93 (252)
T ss_dssp HHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCT---TTSCCCCSSC
T ss_pred HHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcch---hhhccccccc
Confidence 455678899999999999997654432 55689999999999976542 124566666 34443 3678
Q ss_pred eeEEEecchhhccCC----HHHHHHHHHHcccCCcEEEEEEcCchhH
Q 023470 158 FDAVVCAVSVQYLQQ----PEKVFAEVFRVLKPGGVFIVSFSNRMFY 200 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~----~~~~l~~~~r~LkpgG~li~~~~~~~~~ 200 (282)
||+|+|.+++||+.+ ...+++++.++|||||++++++++....
T Consensus 94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i 140 (252)
T d1ri5a_ 94 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVI 140 (252)
T ss_dssp EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHH
T ss_pred ceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHH
Confidence 999999999999843 3469999999999999999999886443
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2e-18 Score=142.84 Aligned_cols=97 Identities=13% Similarity=0.139 Sum_probs=78.9
Q ss_pred CCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEEecc
Q 023470 96 RPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
.++.+|||||||+|...... ....+|+|+|+|++|++.|+.. ..+..+|+ +++++++++||+|++.+
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~---~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL---QDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG---GGCCCCSSCEEEEEEES
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccc---ccccccccccccccccc
Confidence 35678999999999755432 2356899999999999766432 25667777 77888889999999999
Q ss_pred hhhccCCHH--HHHHHHHHcccCCcEEEEEEc
Q 023470 166 SVQYLQQPE--KVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 166 ~l~~~~~~~--~~l~~~~r~LkpgG~li~~~~ 195 (282)
+++|+++++ .++++++++|||||.+++..+
T Consensus 136 ~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~ 167 (222)
T d2ex4a1 136 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN 167 (222)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence 999998764 699999999999999998754
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.69 E-value=3.5e-17 Score=137.14 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC-------CCceEEeecccccCCCCC
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQDQKLEFD 154 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~~~~l~~~ 154 (282)
+.+.+.+.+.+...++.+|||||||+|....... .+.+|+|+|+|+.|++.|++ ...+..+|+ .++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~---~~~~~- 98 (246)
T d1y8ca_ 23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDI---SNLNI- 98 (246)
T ss_dssp HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCG---GGCCC-
T ss_pred HHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccch---hhhcc-
Confidence 3444555566655667899999999997655443 46799999999999976542 346777777 56665
Q ss_pred CCceeEEEec-chhhccCC---HHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 155 HCSFDAVVCA-VSVQYLQQ---PEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 155 ~~s~D~v~~~-~~l~~~~~---~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
+++||+|+|. .+++|+.+ +..++++++++|||||.+++.+.++.
T Consensus 99 ~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 146 (246)
T d1y8ca_ 99 NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYY 146 (246)
T ss_dssp SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHH
T ss_pred cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCHH
Confidence 4689999987 57888864 45599999999999999999876653
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.69 E-value=2.9e-17 Score=140.63 Aligned_cols=98 Identities=16% Similarity=0.259 Sum_probs=79.9
Q ss_pred CCCCCeEEEeCCcccchh---hhhcC-CCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHL---PQEVS-YKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~---~~~~~-~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
+.++.+|||||||+|... +...+ +.+|+|+|+|+.|++.++++ ..+...|+ ..++++ ++||+|+|
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~---~~~~~~-~~fD~v~~ 100 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDA---TEIELN-DKYDIAIC 100 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCT---TTCCCS-SCEEEEEE
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccc---cccccc-CCceEEEE
Confidence 456789999999988653 33333 57999999999999766522 25666676 667765 57999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.++++|++++..++++++++|||||.+++..|+
T Consensus 101 ~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 101 HAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp ESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 999999999999999999999999999988775
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=9e-18 Score=141.41 Aligned_cols=103 Identities=12% Similarity=0.072 Sum_probs=72.9
Q ss_pred hCCCCCeEEEeCCcccchhhh--hcCCCeEEEEcCCHHHHHhCCCCC-----c---------------------------
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQ--EVSYKRVVGHGLNAQELAKNPRLE-----Y--------------------------- 139 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~--~~~~~~v~giD~s~~~l~~~~~~~-----~--------------------------- 139 (282)
...++.+|||||||+|..... .....+|+|+|+|+.|++.+++.. .
T Consensus 48 ~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 48 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 334677899999998864322 224458999999999997654211 0
Q ss_pred ------eEEeecccc-cCCCCCCCceeEEEecchhhccC----CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 140 ------FIVKDLNQD-QKLEFDHCSFDAVVCAVSVQYLQ----QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 140 ------~~~~d~~~~-~~l~~~~~s~D~v~~~~~l~~~~----~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
....+...+ ...++++++||+|++.+++||+. +...++++++|+|||||.+++....
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~ 195 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL 195 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEec
Confidence 011111111 23456788999999999999996 4556999999999999999998654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.68 E-value=2.8e-17 Score=137.82 Aligned_cols=107 Identities=29% Similarity=0.416 Sum_probs=81.2
Q ss_pred HHHHHHhhC-CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC-------CCceEEeecccccCCCCCCCc
Q 023470 87 LTNLYRQML-RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQDQKLEFDHCS 157 (282)
Q Consensus 87 ~~~~~~~~~-~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~~~~l~~~~~s 157 (282)
+..++.... .+..+|||||||+|....... .+.+|+|+|+|++|++.|++ ...+..+|+ ++++++ ++
T Consensus 30 ~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~---~~l~~~-~~ 105 (251)
T d1wzna1 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV---LEIAFK-NE 105 (251)
T ss_dssp HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCG---GGCCCC-SC
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccccchheehhh---hhcccc-cc
Confidence 334444443 346789999999997654332 56799999999999976553 346778887 788876 58
Q ss_pred eeEEEec-chhhccC--CHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 158 FDAVVCA-VSVQYLQ--QPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 158 ~D~v~~~-~~l~~~~--~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
||+|+|. .+++|+. +...+|++++++|||||++++.+++.
T Consensus 106 fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~~ 148 (251)
T d1wzna1 106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCW 148 (251)
T ss_dssp EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred cchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence 9999997 4777774 55679999999999999999987653
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=2.2e-16 Score=135.31 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=74.1
Q ss_pred hCCCCCeEEEeCCcccchhhh--hcCCCeEEEEcCCHHHHHhCC------CCCceEEeecccccCCCCCCCceeEEEecc
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQ--EVSYKRVVGHGLNAQELAKNP------RLEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~--~~~~~~v~giD~s~~~l~~~~------~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
.++++.+|||||||||..... ...+++|+|+++|+++++.++ +......... .+.++.+++||.|+|..
T Consensus 58 ~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~---~d~~~~~~~fD~i~sie 134 (291)
T d1kpia_ 58 NLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI---QGWEEFDEPVDRIVSLG 134 (291)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEE---CCGGGCCCCCSEEEEES
T ss_pred CCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhh---hcccccccccceEeech
Confidence 356899999999999864432 224679999999999876443 2222233333 33455678999999999
Q ss_pred hhhccCC---------HHHHHHHHHHcccCCcEEEEEE
Q 023470 166 SVQYLQQ---------PEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 166 ~l~~~~~---------~~~~l~~~~r~LkpgG~li~~~ 194 (282)
+++|+.+ .+.++++++++|||||++++.+
T Consensus 135 ~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 135 AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp CGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred hHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 9999976 4789999999999999998763
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.64 E-value=7.8e-17 Score=135.88 Aligned_cols=96 Identities=18% Similarity=0.216 Sum_probs=78.0
Q ss_pred CCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 97 PGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
+..+|||+|||+|....... ...+|+|+|+|+.|++.++. ...+...++ +++++++++||+|+|..+++
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~I~~~~vl~ 169 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASM---ETATLPPNTYDLIVIQWTAI 169 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCG---GGCCCCSSCEEEEEEESCGG
T ss_pred CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccc---cccccCCCccceEEeecccc
Confidence 46789999999997543322 35689999999999976652 235667777 77888889999999999999
Q ss_pred ccCCHH--HHHHHHHHcccCCcEEEEEEc
Q 023470 169 YLQQPE--KVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 169 ~~~~~~--~~l~~~~r~LkpgG~li~~~~ 195 (282)
|+++.+ ++|++++++|||||.+++..+
T Consensus 170 hl~d~d~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 170 YLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence 998764 689999999999999998754
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.64 E-value=2.2e-16 Score=128.04 Aligned_cols=96 Identities=21% Similarity=0.216 Sum_probs=73.8
Q ss_pred CCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCCCCCCceeEEEecchh
Q 023470 97 PGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l 167 (282)
++++|||||||+|...... ..+.+|+|+|+|+.|++.++. ...+...|+ ..+++ +++||+|+|..++
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~---~~~~~-~~~fD~I~~~~~~ 105 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDL---NTLTF-DGEYDFILSTVVM 105 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCT---TTCCC-CCCEEEEEEESCG
T ss_pred CCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheec---ccccc-cccccEEEEeeee
Confidence 4469999999998643332 267899999999999975431 224455565 55554 6889999999999
Q ss_pred hccCCH--HHHHHHHHHcccCCcEEEEEEcC
Q 023470 168 QYLQQP--EKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 168 ~~~~~~--~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+|+++. ..++++++++|||||++++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 106 MFLEAQTIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp GGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred ecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 999744 46999999999999999987543
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.64 E-value=4.2e-16 Score=132.99 Aligned_cols=96 Identities=21% Similarity=0.273 Sum_probs=71.0
Q ss_pred CCCCCeEEEeCCcccchhhh--hcCCCeEEEEcCCHHHHHhCCC------CC-ceEEeecccccCCCCCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMSSWVSHLPQ--EVSYKRVVGHGLNAQELAKNPR------LE-YFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~--~~~~~~v~giD~s~~~l~~~~~------~~-~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
++++.+|||||||+|..... ...+++|+|+|+|+++++.++. .. ...... .+....+++||.|+|..
T Consensus 50 l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~----~d~~~~~~~fD~i~si~ 125 (280)
T d2fk8a1 50 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLL----QGWEDFAEPVDRIVSIE 125 (280)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE----SCGGGCCCCCSEEEEES
T ss_pred CCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhh----hhhhhhccchhhhhHhh
Confidence 56899999999999865432 2346899999999999865432 11 111111 11222257899999999
Q ss_pred hhhccC--CHHHHHHHHHHcccCCcEEEEEE
Q 023470 166 SVQYLQ--QPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 166 ~l~~~~--~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
+++|+. +.+.+|++++++|||||++++..
T Consensus 126 ~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 126 AFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp CGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 999996 44889999999999999999853
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=5.6e-17 Score=137.46 Aligned_cols=110 Identities=14% Similarity=0.142 Sum_probs=75.7
Q ss_pred HHHHHHHhhCCCCCeEEEeCCcccchh--hhhcCCCeEEEEcCCHHHHHhCCC-----CC--------------------
Q 023470 86 TLTNLYRQMLRPGSEVLDLMSSWVSHL--PQEVSYKRVVGHGLNAQELAKNPR-----LE-------------------- 138 (282)
Q Consensus 86 ~~~~~~~~~~~~~~~vLDiGcG~~~~~--~~~~~~~~v~giD~s~~~l~~~~~-----~~-------------------- 138 (282)
.+.+.+.....++.+|||+|||.|.+. .......+|+|+|+|+.|++.+++ ..
T Consensus 43 ~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 122 (263)
T d2g72a1 43 CLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGEC 122 (263)
T ss_dssp HHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCC
T ss_pred HHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccch
Confidence 334444444456789999999987542 222245689999999999975431 00
Q ss_pred -------------ceEEeecccc---cCCCCCCCceeEEEecchhhccC----CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 139 -------------YFIVKDLNQD---QKLEFDHCSFDAVVCAVSVQYLQ----QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 139 -------------~~~~~d~~~~---~~l~~~~~s~D~v~~~~~l~~~~----~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
....+|+... ...+...++||+|++.+++||+. +...++++++++|||||.|++...
T Consensus 123 ~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~ 199 (263)
T d2g72a1 123 WQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 199 (263)
T ss_dssp HHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 1122344322 12334567899999999999995 456799999999999999998754
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.62 E-value=1.4e-16 Score=128.27 Aligned_cols=99 Identities=14% Similarity=0.042 Sum_probs=75.0
Q ss_pred hCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC--------------------CceEEeecccccCCC
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL--------------------EYFIVKDLNQDQKLE 152 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~--------------------~~~~~~d~~~~~~l~ 152 (282)
.++++.+|||+|||+|....... .+.+|+|+|+|+.|++.++.. ..+..++. ..++
T Consensus 17 ~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~l~ 93 (201)
T d1pjza_ 17 NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF---FALT 93 (201)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC---SSST
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc---cccc
Confidence 36688999999999986433222 578999999999999776532 13344444 3443
Q ss_pred -CCCCceeEEEecchhhccCC--HHHHHHHHHHcccCCcEEEEEEc
Q 023470 153 -FDHCSFDAVVCAVSVQYLQQ--PEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 153 -~~~~s~D~v~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
....+||+|++..+++|+.+ ...++++++++|||||.+++...
T Consensus 94 ~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~ 139 (201)
T d1pjza_ 94 ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL 139 (201)
T ss_dssp HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred cccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEc
Confidence 33467999999999999974 56799999999999999887654
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.59 E-value=3.4e-15 Score=127.38 Aligned_cols=94 Identities=19% Similarity=0.306 Sum_probs=71.6
Q ss_pred hCCCCCeEEEeCCcccchhh--hhcCCCeEEEEcCCHHHHHhCCC------CC---ceEEeecccccCCCCCCCceeEEE
Q 023470 94 MLRPGSEVLDLMSSWVSHLP--QEVSYKRVVGHGLNAQELAKNPR------LE---YFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~--~~~~~~~v~giD~s~~~l~~~~~------~~---~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
.++++.+|||||||||.... ....+++|+|+++|+++++.+++ .. .+...|. ..+ +++||.|+
T Consensus 59 ~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~---~~~---~~~fD~i~ 132 (285)
T d1kpga_ 59 GLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW---EQF---DEPVDRIV 132 (285)
T ss_dssp TCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG---GGC---CCCCSEEE
T ss_pred CCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhh---hcc---ccccccee
Confidence 35689999999999986432 22246899999999988764432 22 3334443 333 47899999
Q ss_pred ecchhhccC--CHHHHHHHHHHcccCCcEEEEE
Q 023470 163 CAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 163 ~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|..+++|+. +...++++++|+|||||++++.
T Consensus 133 si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 133 SIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp EESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred eehhhhhcCchhHHHHHHHHHhhcCCCCcEEEE
Confidence 999999995 5588999999999999999875
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=3.4e-15 Score=127.23 Aligned_cols=101 Identities=10% Similarity=0.022 Sum_probs=73.1
Q ss_pred CCeEEEeCCcccchh---hh----hcC--CCeEEEEcCCHHHHHhCCCC-------C--ceEEeecccc-----cCCCCC
Q 023470 98 GSEVLDLMSSWVSHL---PQ----EVS--YKRVVGHGLNAQELAKNPRL-------E--YFIVKDLNQD-----QKLEFD 154 (282)
Q Consensus 98 ~~~vLDiGcG~~~~~---~~----~~~--~~~v~giD~s~~~l~~~~~~-------~--~~~~~d~~~~-----~~l~~~ 154 (282)
..+|||||||+|... +. ..+ ...++|+|+|+.|++.+++. . .+.....+.. ...+.+
T Consensus 41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (280)
T d1jqea_ 41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 120 (280)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence 447999999988642 11 112 34789999999999765321 1 1112221110 134567
Q ss_pred CCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 155 HCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 155 ~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
+++||+|+|.+++||++|+..++++++++|||||.+++.++++.
T Consensus 121 ~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~ 164 (280)
T d1jqea_ 121 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS 164 (280)
T ss_dssp CCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred CCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCc
Confidence 89999999999999999999999999999999999998876543
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=2.8e-15 Score=128.70 Aligned_cols=102 Identities=18% Similarity=0.230 Sum_probs=72.6
Q ss_pred CCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCCC----------ceEEeecccc---cCCCCCCCceeEEE
Q 023470 97 PGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRLE----------YFIVKDLNQD---QKLEFDHCSFDAVV 162 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~----------~~~~~d~~~~---~~l~~~~~s~D~v~ 162 (282)
++.+|||+|||+|....... .+.+|+|+|+|++||+.|+... .....+.... ..++. .++||+|+
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fd~v~ 134 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA-GDGFDAVI 134 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC-TTCEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCC-CCCceEEE
Confidence 46789999999987644432 5679999999999997664221 1222222110 12333 46799999
Q ss_pred ec-chhhccCC-------HHHHHHHHHHcccCCcEEEEEEcCchh
Q 023470 163 CA-VSVQYLQQ-------PEKVFAEVFRVLKPGGVFIVSFSNRMF 199 (282)
Q Consensus 163 ~~-~~l~~~~~-------~~~~l~~~~r~LkpgG~li~~~~~~~~ 199 (282)
|. .+++|+++ ...+|++++|+|||||.|++++.+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~ 179 (292)
T d1xvaa_ 135 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDY 179 (292)
T ss_dssp ECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHH
T ss_pred EecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCHHH
Confidence 87 58999864 446999999999999999999876543
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=4.2e-15 Score=123.12 Aligned_cols=99 Identities=10% Similarity=0.024 Sum_probs=75.3
Q ss_pred CCCCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCC-------------------------CCceEEeecccc
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPR-------------------------LEYFIVKDLNQD 148 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~-------------------------~~~~~~~d~~~~ 148 (282)
++++.+|||+|||.|...... ..+.+|+|+|+|+.+++.+++ ...+.++|+
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~--- 119 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSI--- 119 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCG---
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcch---
Confidence 457889999999988643332 267899999999999975421 123455555
Q ss_pred cCC-CCCCCceeEEEecchhhccC--CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 149 QKL-EFDHCSFDAVVCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 149 ~~l-~~~~~s~D~v~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
..+ +...++||+|+...+++|++ +.+.+++++.++|||||++++.+..
T Consensus 120 ~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~ 170 (229)
T d2bzga1 120 FDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLS 170 (229)
T ss_dssp GGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred hhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence 344 35578999999999999995 5567999999999999998877543
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.1e-15 Score=126.70 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=72.3
Q ss_pred CCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCCC-------ceEEeecccccCCCCCCCceeEEE---
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRLE-------YFIVKDLNQDQKLEFDHCSFDAVV--- 162 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~-------~~~~~d~~~~~~l~~~~~s~D~v~--- 162 (282)
..++.+|||||||+|...... ....+|+|+|+|+.|++.++... .....+... ...++++++||.|+
T Consensus 51 ~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~fD~i~fD~ 129 (229)
T d1zx0a1 51 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWED-VAPTLPDGHFDGILYDT 129 (229)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHH-HGGGSCTTCEEEEEECC
T ss_pred ccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccc-cccccccccccceeecc
Confidence 457889999999998644332 24468999999999997665321 122222211 23456778999887
Q ss_pred --ecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 163 --CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 163 --~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+.++++|+.+++.++++++|+|||||+|++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 130 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 5688899999999999999999999998874
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.49 E-value=5.4e-15 Score=124.02 Aligned_cols=102 Identities=20% Similarity=0.247 Sum_probs=76.0
Q ss_pred HHHHHHHHhhCCCCCeEEEeCCcccchhhh-hcCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCC
Q 023470 85 STLTNLYRQMLRPGSEVLDLMSSWVSHLPQ-EVSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHC 156 (282)
Q Consensus 85 ~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~-~~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~ 156 (282)
+...+.+.....++.+|||+|||+|..... ...+.+|+|+|+|+.|++.++.+ ..+...+. .. .++++
T Consensus 108 ~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~---~~-~~~~~ 183 (254)
T d2nxca1 108 RLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSL---EA-ALPFG 183 (254)
T ss_dssp HHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCH---HH-HGGGC
T ss_pred hHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccc---cc-ccccc
Confidence 345666677788999999999998864322 23568999999999999766532 23445554 22 24467
Q ss_pred ceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 157 SFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 157 s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+||+|+++...+.+ ..++.++.++|||||+++++
T Consensus 184 ~fD~V~ani~~~~l---~~l~~~~~~~LkpGG~lilS 217 (254)
T d2nxca1 184 PFDLLVANLYAELH---AALAPRYREALVPGGRALLT 217 (254)
T ss_dssp CEEEEEEECCHHHH---HHHHHHHHHHEEEEEEEEEE
T ss_pred ccchhhhccccccH---HHHHHHHHHhcCCCcEEEEE
Confidence 89999998766554 67889999999999999987
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.49 E-value=8.7e-15 Score=123.11 Aligned_cols=123 Identities=22% Similarity=0.260 Sum_probs=90.1
Q ss_pred hCCCCCeEEEeCCcccch---hhhh-cCCCeEEEEcCCHHHHHhCCC-----------CCceEEeecccccCCCCCCCce
Q 023470 94 MLRPGSEVLDLMSSWVSH---LPQE-VSYKRVVGHGLNAQELAKNPR-----------LEYFIVKDLNQDQKLEFDHCSF 158 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~---~~~~-~~~~~v~giD~s~~~l~~~~~-----------~~~~~~~d~~~~~~l~~~~~s~ 158 (282)
.+.|+++|||+|||+|.. ++.. .+..+|+++|+++++++.+++ +..+.+.|+ .+.++++++|
T Consensus 93 ~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~---~~~~~~~~~f 169 (264)
T d1i9ga_ 93 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL---ADSELPDGSV 169 (264)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG---GGCCCCTTCE
T ss_pred CCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccc---ccccccCCCc
Confidence 467999999999998864 3333 267899999999999876643 224455555 5667889999
Q ss_pred eEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHHHHHHhhhcCCCCcchhhHHHHHHhhCCCCchHHhhcC
Q 023470 159 DAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYEKAISAWRDGTAYGRVQLVVQYFQCVEGYTNPEIVRKL 238 (282)
Q Consensus 159 D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~ei~~~~ 238 (282)
|.|++ +++++..++.++.++|||||++++..|+-.-..+... -+....||..++..+.+
T Consensus 170 DaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~----------------~l~~~~~f~~i~~~E~l 228 (264)
T d1i9ga_ 170 DRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVE----------------ALRAKQCWTEPRAWETL 228 (264)
T ss_dssp EEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHH----------------HHHHHSSBCCCEEECCC
T ss_pred ceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHH----------------HHHHcCCeecceEEEEE
Confidence 99986 7899999999999999999999998886533222221 12223567777666665
Q ss_pred CC
Q 023470 239 PA 240 (282)
Q Consensus 239 ~~ 240 (282)
.+
T Consensus 229 ~R 230 (264)
T d1i9ga_ 229 QR 230 (264)
T ss_dssp CC
T ss_pred EE
Confidence 54
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.48 E-value=4.8e-14 Score=116.57 Aligned_cols=99 Identities=18% Similarity=0.121 Sum_probs=75.4
Q ss_pred CCCCCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhCC----CC--CceEEeecccccCCCCCCCceeEEEecc
Q 023470 95 LRPGSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKNP----RL--EYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~~----~~--~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
++++.+|||+|||+|. +++...+...|+|+|+|+.|++.++ .. ...+..+.. ...++.+..+|++++..
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~--~~~~~~~~~~~v~~i~~ 149 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDAN--KPQEYANIVEKVDVIYE 149 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTT--CGGGGTTTCCCEEEEEE
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeec--cCcccccccceeEEeec
Confidence 4689999999999875 4555557789999999999986432 22 234444442 23334567788888888
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.++|..+.+.++.++.++|||||.+++++.
T Consensus 150 ~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k 179 (230)
T d1g8sa_ 150 DVAQPNQAEILIKNAKWFLKKGGYGMIAIK 179 (230)
T ss_dssp CCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccchHHHHHHHHHHHHhcccCceEEEEee
Confidence 888998999999999999999999998854
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.48 E-value=1.5e-14 Score=118.03 Aligned_cols=96 Identities=20% Similarity=0.060 Sum_probs=69.4
Q ss_pred hCCCCCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhCC------CCCceEEeecccccCCCCCC---CceeEE
Q 023470 94 MLRPGSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKNP------RLEYFIVKDLNQDQKLEFDH---CSFDAV 161 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~~------~~~~~~~~d~~~~~~l~~~~---~s~D~v 161 (282)
.++|+.+|||+|||+|. +++...+..+|+|+|+|+.|++.++ .+..++..+. ...+... ..+|+|
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~---~~~~~~~~~~~~vd~v 129 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA---SKPWKYSGIVEKVDLI 129 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCT---TCGGGTTTTCCCEEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeec---cCccccccccceEEEE
Confidence 45689999999999875 4455557779999999999986543 3334555555 3333223 345554
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
++ .+.|..+...++++++++|||||++++.+
T Consensus 130 ~~--~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 130 YQ--DIAQKNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp EE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Ee--cccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence 43 45677788889999999999999999875
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.47 E-value=7.9e-14 Score=111.64 Aligned_cols=98 Identities=15% Similarity=0.045 Sum_probs=74.3
Q ss_pred hCCCCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.+.++.+|||+|||+|...... ..+.+|+|+|++++|++.+++ +..+..+|. .+...+..+||+|++
T Consensus 30 ~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda---~~~~~~~~~~D~v~~ 106 (186)
T d1l3ia_ 30 EPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDA---PEALCKIPDIDIAVV 106 (186)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCH---HHHHTTSCCEEEEEE
T ss_pred CCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECch---hhcccccCCcCEEEE
Confidence 4568899999999988643332 356799999999999976542 224555665 455556688999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
....++ ...+++++.+.|||||++++.....
T Consensus 107 ~~~~~~---~~~~~~~~~~~LkpgG~lvi~~~~~ 137 (186)
T d1l3ia_ 107 GGSGGE---LQEILRIIKDKLKPGGRIIVTAILL 137 (186)
T ss_dssp SCCTTC---HHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred eCcccc---chHHHHHHHHHhCcCCEEEEEeecc
Confidence 876554 4789999999999999999876543
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.46 E-value=3.1e-14 Score=118.92 Aligned_cols=95 Identities=18% Similarity=0.223 Sum_probs=73.0
Q ss_pred hCCCCCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHhCCCC---------CceEEeecccccCCCCCCCceeE
Q 023470 94 MLRPGSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQDQKLEFDHCSFDA 160 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~~~l~~~~~s~D~ 160 (282)
.+.|+.+|||+|||+|.. ++... +..+|+++|+++++++.++++ ..+...|+ .+. +++++||+
T Consensus 82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di---~~~-~~~~~fD~ 157 (250)
T d1yb2a1 82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI---ADF-ISDQMYDA 157 (250)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCT---TTC-CCSCCEEE
T ss_pred CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeee---ecc-cccceeee
Confidence 467999999999998853 33332 678999999999998765432 23444444 222 45789999
Q ss_pred EEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 161 VVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 161 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
|++ +++++..++.++.++|||||++++..|+-
T Consensus 158 V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~i 189 (250)
T d1yb2a1 158 VIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNF 189 (250)
T ss_dssp EEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred eee-----cCCchHHHHHHHHHhcCCCceEEEEeCCc
Confidence 986 57899999999999999999999988753
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.46 E-value=4.2e-14 Score=114.03 Aligned_cols=99 Identities=12% Similarity=0.147 Sum_probs=73.7
Q ss_pred CCCCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCC--------C--CceEEeecccccCCCCCCCceeEEEe
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPR--------L--EYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~--------~--~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
..++.+|||+|||+|...... ..+.+|+|+|+|+.+++.++. . ..+...|. .+ ++++++||+|+|
T Consensus 50 ~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~---~~-~~~~~~fD~Ii~ 125 (194)
T d1dusa_ 50 VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL---YE-NVKDRKYNKIIT 125 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST---TT-TCTTSCEEEEEE
T ss_pred cCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcch---hh-hhccCCceEEEE
Confidence 346889999999988643332 256799999999999876542 1 23344444 33 456789999999
Q ss_pred cchhhccCCH-HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 164 AVSVQYLQQP-EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 164 ~~~l~~~~~~-~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+..+|+..+. +.+++++.++|||||.+++.+...
T Consensus 126 ~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 160 (194)
T d1dusa_ 126 NPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred cccEEecchhhhhHHHHHHHhcCcCcEEEEEEeCc
Confidence 9988877653 668999999999999998876543
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.46 E-value=4.4e-14 Score=118.60 Aligned_cols=93 Identities=11% Similarity=0.125 Sum_probs=68.9
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCC---------CCCceEEeecccccCCCCCCCceeEEEe
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNP---------RLEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~---------~~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.+..+|||||||+|... ++..+..+++++|++ ++++.++ ....+..+|+ .+ +. ..+||+|++
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~rv~~~~~D~---~~-~~-~~~~D~v~~ 152 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMA-GTVDTARSYLKDEGLSDRVDVVEGDF---FE-PL-PRKADAIIL 152 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECT-THHHHHHHHHHHTTCTTTEEEEECCT---TS-CC-SSCEEEEEE
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCH-HHHHHHHHHHHHhhcccchhhccccc---hh-hc-ccchhheee
Confidence 35678999999988654 444578999999984 4554332 2235666665 22 22 256999999
Q ss_pred cchhhccCCHH--HHHHHHHHcccCCcEEEEEE
Q 023470 164 AVSVQYLQQPE--KVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 164 ~~~l~~~~~~~--~~l~~~~r~LkpgG~li~~~ 194 (282)
.++|||+++.+ .+|++++++|||||++++..
T Consensus 153 ~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 153 SFVLLNWPDHDAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccCCchhhHHHHHHHHHhcCCCcEEEEEe
Confidence 99999998664 58999999999999998863
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.43 E-value=1.3e-13 Score=111.82 Aligned_cols=102 Identities=13% Similarity=0.136 Sum_probs=76.4
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCC------C--CCceEEeecccccCCC--CCCCceeEEEe
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNP------R--LEYFIVKDLNQDQKLE--FDHCSFDAVVC 163 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~------~--~~~~~~~d~~~~~~l~--~~~~s~D~v~~ 163 (282)
++-.|||||||+|..+ +...+...++|+|+++.+++.+. + +..+..+|+ ..+. ++++++|.|++
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da---~~l~~~~~~~~~d~v~i 105 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA---DTLTDVFEPGEVKRVYL 105 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCG---GGHHHHCCTTSCCEEEE
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccch---hhhhcccCchhhhcccc
Confidence 3457999999988654 44458899999999999885432 2 234555655 3443 67899999999
Q ss_pred cchhhccCCH--------HHHHHHHHHcccCCcEEEEEEcCchhHH
Q 023470 164 AVSVQYLQQP--------EKVFAEVFRVLKPGGVFIVSFSNRMFYE 201 (282)
Q Consensus 164 ~~~l~~~~~~--------~~~l~~~~r~LkpgG~li~~~~~~~~~~ 201 (282)
.+...|.... ..++++++|+|||||.|++.+.+..+..
T Consensus 106 ~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~ 151 (204)
T d2fcaa1 106 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFE 151 (204)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHH
T ss_pred ccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHH
Confidence 9887766533 4799999999999999999876655444
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.41 E-value=7.5e-13 Score=108.93 Aligned_cols=99 Identities=18% Similarity=0.157 Sum_probs=72.1
Q ss_pred CCCCCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHhCC------CCCceEEeecccccCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAKNP------RLEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~~~------~~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
++|+.+|||+|||+|.. ++... +..+|+|+|+|+.|++.++ .+...+..+.......+....++|+|++.
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d 150 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEE
Confidence 56899999999997764 44443 6789999999999985432 22334455553323444455779988774
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+.|..+.+.+++++.++|||||++++++.
T Consensus 151 --~~~~~~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 151 --VAQPTQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp --CCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --ccccchHHHHHHHHHHhcccCCeEEEEEE
Confidence 44666778899999999999999998753
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=3.1e-13 Score=111.28 Aligned_cols=105 Identities=18% Similarity=0.215 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHhCCCC-------------CceEEeec
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAKNPRL-------------EYFIVKDL 145 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~~~~~-------------~~~~~~d~ 145 (282)
....+.+.+...++++.+|||||||+|.. ++... +..+|+++|+++++++.++++ ..+..+|.
T Consensus 62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~ 141 (224)
T d1i1na_ 62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 141 (224)
T ss_dssp HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence 44455555555678999999999998864 33332 577999999999998765422 23455555
Q ss_pred ccccCCCCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 146 NQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 146 ~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.....++++||+|++..++++++ .++.+.|||||++++.+..
T Consensus 142 ---~~~~~~~~~fD~I~~~~~~~~ip------~~l~~~LkpGG~LV~pv~~ 183 (224)
T d1i1na_ 142 ---RMGYAEEAPYDAIHVGAAAPVVP------QALIDQLKPGGRLILPVGP 183 (224)
T ss_dssp ---GGCCGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred ---ccccchhhhhhhhhhhcchhhcC------HHHHhhcCCCcEEEEEEcc
Confidence 45555678999999999999886 3588999999999987653
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.39 E-value=2.1e-13 Score=111.43 Aligned_cols=93 Identities=22% Similarity=0.190 Sum_probs=70.4
Q ss_pred hCCCCCeEEEeCCcccchh---hhhc-CCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEE
Q 023470 94 MLRPGSEVLDLMSSWVSHL---PQEV-SYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAV 161 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~---~~~~-~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v 161 (282)
.++++.+|||||||+|... +... +..+|+++|+++++++.++.+ ..+..+|. ......+++||+|
T Consensus 72 ~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~---~~~~~~~~~fD~I 148 (213)
T d1dl5a1 72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDG---YYGVPEFSPYDVI 148 (213)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG---GGCCGGGCCEEEE
T ss_pred hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCch---HHccccccchhhh
Confidence 3678999999999988643 3333 567999999999998766532 23444554 4445557889999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
++..+++|++ +++.+.|||||++++.+.
T Consensus 149 ~~~~~~~~~p------~~l~~~LkpGG~lv~pv~ 176 (213)
T d1dl5a1 149 FVTVGVDEVP------ETWFTQLKEGGRVIVPIN 176 (213)
T ss_dssp EECSBBSCCC------HHHHHHEEEEEEEEEEBC
T ss_pred hhhccHHHhH------HHHHHhcCCCcEEEEEEC
Confidence 9999999986 357889999999998654
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.37 E-value=3.1e-13 Score=113.55 Aligned_cols=93 Identities=18% Similarity=0.148 Sum_probs=67.3
Q ss_pred CCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCC---------CCCceEEeecccccCCCCCCCceeEEEe
Q 023470 96 RPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNP---------RLEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~---------~~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
....+|||||||.|... ++..+..+++++|+ +++++.++ ....+...|. .. +.+ ..+|+|++
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~---~~-~~p-~~~D~v~~ 153 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDF---FK-PLP-VTADVVLL 153 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT---TS-CCS-CCEEEEEE
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeec---cc-ccc-ccchhhhc
Confidence 35578999999988654 44457899999998 55554332 1223344443 21 333 45999999
Q ss_pred cchhhccCCHH--HHHHHHHHcccCCcEEEEEE
Q 023470 164 AVSVQYLQQPE--KVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 164 ~~~l~~~~~~~--~~l~~~~r~LkpgG~li~~~ 194 (282)
.++|||.++.+ .+|++++++|||||+++|..
T Consensus 154 ~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d 186 (256)
T d1qzza2 154 SFVLLNWSDEDALTILRGCVRALEPGGRLLVLD 186 (256)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccCcHHHHHHHHHHHhhcCCcceeEEEE
Confidence 99999997654 57999999999999998764
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.35 E-value=2e-12 Score=108.91 Aligned_cols=98 Identities=16% Similarity=0.155 Sum_probs=72.2
Q ss_pred hCCCCCeEEEeCCcccc---hhhhhc-CCCeEEEEcCCHHHHHhCCCC------CceEEeecccccCCCCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSWVS---HLPQEV-SYKRVVGHGLNAQELAKNPRL------EYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~---~~~~~~-~~~~v~giD~s~~~l~~~~~~------~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.+.++.+|||+|||+|. .++... +.++|+++|+++++++.++++ .......... ....+....+|.|+
T Consensus 100 ~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d-~~~~~~~~~~D~V~- 177 (266)
T d1o54a_ 100 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD-ISEGFDEKDVDALF- 177 (266)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC-GGGCCSCCSEEEEE-
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecc-ccccccccceeeeE-
Confidence 46799999999999885 344443 678999999999999776532 1222222211 12335567799876
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
++++++..+++++.++|||||++++..|..
T Consensus 178 ----~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~ 207 (266)
T d1o54a_ 178 ----LDVPDPWNYIDKCWEALKGGGRFATVCPTT 207 (266)
T ss_dssp ----ECCSCGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred ----ecCCCHHHHHHHHHhhcCCCCEEEEEeCcc
Confidence 478999999999999999999999887753
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.34 E-value=2e-12 Score=104.74 Aligned_cols=102 Identities=14% Similarity=0.142 Sum_probs=74.5
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCC--------CCCceEEeecccccCCC--CCCCceeEEEe
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNP--------RLEYFIVKDLNQDQKLE--FDHCSFDAVVC 163 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~--------~~~~~~~~d~~~~~~l~--~~~~s~D~v~~ 163 (282)
..-.|||||||.|..+ +...+...++|+|+++.+++.+. .+..+..+|+ ..+. +++.++|.|++
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da---~~l~~~~~~~~~~~i~i 107 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG---SDLTDYFEDGEIDRLYL 107 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCS---SCGGGTSCTTCCSEEEE
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCH---HHHhhhccCCceehhcc
Confidence 3457999999998754 44458999999999999886542 2334556665 3443 67899999998
Q ss_pred cchhhccCCH--------HHHHHHHHHcccCCcEEEEEEcCchhHH
Q 023470 164 AVSVQYLQQP--------EKVFAEVFRVLKPGGVFIVSFSNRMFYE 201 (282)
Q Consensus 164 ~~~l~~~~~~--------~~~l~~~~r~LkpgG~li~~~~~~~~~~ 201 (282)
.+.-.|.... ..+++.++++|||||.+++.+.+..+..
T Consensus 108 ~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~ 153 (204)
T d1yzha1 108 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFE 153 (204)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHH
T ss_pred cccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHH
Confidence 7765443321 5799999999999999999876655443
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=3e-13 Score=117.65 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=75.5
Q ss_pred HHHHHHHh-hCCCCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCC-----------------CCCceEEee
Q 023470 86 TLTNLYRQ-MLRPGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNP-----------------RLEYFIVKD 144 (282)
Q Consensus 86 ~~~~~~~~-~~~~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~-----------------~~~~~~~~d 144 (282)
.+..++.. .+.++.+|||+|||+|... +...+..+++|+|+|+.|++.++ ....+..+|
T Consensus 139 ~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 139 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 34444443 3668899999999998654 33346678999999998875543 223567777
Q ss_pred cccccCCCCCCCce--eEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 145 LNQDQKLEFDHCSF--DAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 145 ~~~~~~l~~~~~s~--D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+ .++++.+..+ |+|++ +.+.|.++....+.++.|+|||||+++..
T Consensus 219 ~---~~~~~~~~~~~advi~~-~~~~f~~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 219 F---LSEEWRERIANTSVIFV-NNFAFGPEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp T---TSHHHHHHHHHCSEEEE-CCTTTCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred c---cccccccccCcceEEEE-cceecchHHHHHHHHHHHhCCCCcEEEEe
Confidence 7 5666655544 56665 45567788899999999999999999864
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.26 E-value=1.8e-11 Score=106.31 Aligned_cols=114 Identities=13% Similarity=0.183 Sum_probs=77.5
Q ss_pred CCCeEEEeCCcccch--hhhhcCCCeEEEEcCCHHHHHhC------CC---CCceEEeecccccCCCCCCCceeEEEecc
Q 023470 97 PGSEVLDLMSSWVSH--LPQEVSYKRVVGHGLNAQELAKN------PR---LEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~--~~~~~~~~~v~giD~s~~~l~~~------~~---~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
++.+|||||||+|.. ++...+..+|+|+|.|+.+ ..+ .+ ...++.+++ .++++++++||+|++..
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~~~~~~~i~~i~~~~---~~l~~~~~~~D~i~se~ 113 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSII-EMAKELVELNGFSDKITLLRGKL---EDVHLPFPKVDIIISEW 113 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHH-HHHHHHHHHTTCTTTEEEEESCT---TTSCCSSSCEEEEEECC
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHH-HHHHHHHHHhCccccceEEEeeh---hhccCcccceeEEEEEe
Confidence 788999999998753 3333456799999999632 211 11 224556666 78888889999999975
Q ss_pred hhh---ccCCHHHHHHHHHHcccCCcEEEE--------EEcCchhHHHHHHhhhcCCCCc
Q 023470 166 SVQ---YLQQPEKVFAEVFRVLKPGGVFIV--------SFSNRMFYEKAISAWRDGTAYG 214 (282)
Q Consensus 166 ~l~---~~~~~~~~l~~~~r~LkpgG~li~--------~~~~~~~~~~~~~~~~~~~~~~ 214 (282)
+.+ +....+.++.++.|+|||||.++- .+..+.........|....+..
T Consensus 114 ~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~~~~~~~v~~~~l~~~~~~~~~~~~G~d 173 (328)
T d1g6q1_ 114 MGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFD 173 (328)
T ss_dssp CBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHHHHHHTTCBTTBC
T ss_pred cceeeccchhHHHHHHHHHhccCCCeEEEeeecceeeecccCHHHHHHhccccccccccc
Confidence 554 445788899999999999999851 1233344444445565444433
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=6.9e-12 Score=108.27 Aligned_cols=98 Identities=27% Similarity=0.326 Sum_probs=69.6
Q ss_pred hCCCCCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHhCCCC-------------------CceEEeecccccC
Q 023470 94 MLRPGSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAKNPRL-------------------EYFIVKDLNQDQK 150 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~~~~~-------------------~~~~~~d~~~~~~ 150 (282)
.+.|+.+|||+|||.|.. ++... +..+|+++|+++++++.|+++ ..+...|+.. ..
T Consensus 95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~-~~ 173 (324)
T d2b25a1 95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISG-AT 173 (324)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTC-CC
T ss_pred CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhh-cc
Confidence 577999999999998864 33333 678999999999988765421 2344555522 11
Q ss_pred CCCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 151 LEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 151 l~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
..+++.+||.|+. .++++..++.++.++|||||++++-+|+-
T Consensus 174 ~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 174 EDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp -------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred cccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 2345678999986 67888899999999999999999887764
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.21 E-value=1.2e-11 Score=106.74 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=68.7
Q ss_pred CCCeEEEeCCcccch--hhhhcCCCeEEEEcCCHHHHHh-----CC---CCCceEEeecccccCCCCCCCceeEEEecch
Q 023470 97 PGSEVLDLMSSWVSH--LPQEVSYKRVVGHGLNAQELAK-----NP---RLEYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~--~~~~~~~~~v~giD~s~~~l~~-----~~---~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
++.+|||||||+|.. ++...+..+|+|+|.|+.+... .. ....+..++. .+++++.++||+|++..+
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~---~~~~~~~~~~D~ivs~~~ 109 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKV---EEVELPVEKVDIIISEWM 109 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCT---TTCCCSSSCEEEEEECCC
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccH---HHcccccceeEEEeeeee
Confidence 788999999998753 3333455789999999754321 11 2234556666 778888899999999766
Q ss_pred hhcc---CCHHHHHHHHHHcccCCcEEE
Q 023470 167 VQYL---QQPEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 167 l~~~---~~~~~~l~~~~r~LkpgG~li 191 (282)
.+++ ...+.++..+.|+|||||.++
T Consensus 110 ~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 110 GYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 5544 467889999999999999986
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.9e-11 Score=105.24 Aligned_cols=93 Identities=14% Similarity=0.105 Sum_probs=68.8
Q ss_pred CCCCeEEEeCCcccch--hhhhcCCCeEEEEcCCHHHHHhC-----C---CCCceEEeecccccCCCCCCCceeEEEecc
Q 023470 96 RPGSEVLDLMSSWVSH--LPQEVSYKRVVGHGLNAQELAKN-----P---RLEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~--~~~~~~~~~v~giD~s~~~l~~~-----~---~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
.++.+|||||||+|.. .+...+..+|+|+|.|+.|.... . ....+..+++ .++++++++||+|++..
T Consensus 34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~---~~l~~~~~~~D~Ivse~ 110 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKI---EEVHLPVEKVDVIISEW 110 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCT---TTSCCSCSCEEEEEECC
T ss_pred CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeH---HHhcCccccceEEEEee
Confidence 4688999999998753 23334557999999999765211 1 1234556666 77888889999999986
Q ss_pred hhhccC---CHHHHHHHHHHcccCCcEEE
Q 023470 166 SVQYLQ---QPEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 166 ~l~~~~---~~~~~l~~~~r~LkpgG~li 191 (282)
..+++. .++.++....++|||||+++
T Consensus 111 ~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 111 MGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp CBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred eeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 666653 45678888899999999986
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.20 E-value=1.1e-11 Score=109.80 Aligned_cols=108 Identities=15% Similarity=0.107 Sum_probs=70.5
Q ss_pred HHHHHHHHh-hCCCCCeEEEeCCcccchhh---hhcCCCeEEEEcCCHHHHHhCCCCC--------------ceEEeecc
Q 023470 85 STLTNLYRQ-MLRPGSEVLDLMSSWVSHLP---QEVSYKRVVGHGLNAQELAKNPRLE--------------YFIVKDLN 146 (282)
Q Consensus 85 ~~~~~~~~~-~~~~~~~vLDiGcG~~~~~~---~~~~~~~v~giD~s~~~l~~~~~~~--------------~~~~~d~~ 146 (282)
..+.+++.. .+.++.+|||||||+|.... ...+..+|+|||+|+.|++.|+... ........
T Consensus 203 ~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~ 282 (406)
T d1u2za_ 203 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 282 (406)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence 334444544 36789999999999986543 3336679999999999987664321 01111110
Q ss_pred cc-cCCC---CCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 147 QD-QKLE---FDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 147 ~~-~~l~---~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.+ ...+ ..-..+|+|+++. ++|.++....|.+++|+|||||+++..
T Consensus 283 ~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 283 KSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred echhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence 00 1111 0113467887654 567788899999999999999998864
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.15 E-value=2.2e-11 Score=99.75 Aligned_cols=93 Identities=19% Similarity=0.197 Sum_probs=67.4
Q ss_pred hCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC------CCceEEeecccccCCCCCCCceeEEEecch
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR------LEYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
.+.++.+|||||||+|...+... ...+|+++|+++++++.+++ +..+..+|. .....+.++||+|++..+
T Consensus 67 ~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~---~~g~~~~~pfD~Iiv~~a 143 (224)
T d1vbfa_ 67 DLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDG---TLGYEEEKPYDRVVVWAT 143 (224)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCG---GGCCGGGCCEEEEEESSB
T ss_pred hhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcccccccccCch---hhcchhhhhHHHHHhhcc
Confidence 46789999999999886432211 35799999999998865432 234555554 222223578999999999
Q ss_pred hhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 167 VQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 167 l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
+++++ ..+.+.|||||+|++-+.
T Consensus 144 ~~~ip------~~l~~qLk~GGrLV~pvg 166 (224)
T d1vbfa_ 144 APTLL------CKPYEQLKEGGIMILPIG 166 (224)
T ss_dssp BSSCC------HHHHHTEEEEEEEEEEEC
T ss_pred hhhhh------HHHHHhcCCCCEEEEEEc
Confidence 98886 356788999999998654
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=1.1e-10 Score=98.13 Aligned_cols=98 Identities=13% Similarity=0.159 Sum_probs=69.6
Q ss_pred hCCCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccccCCCCCCCceeEEE
Q 023470 94 MLRPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQDQKLEFDHCSFDAVV 162 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~~~l~~~~~s~D~v~ 162 (282)
....+.+|||+|||+|.. ++...+..+|+|+|+|+.+++.|+.+ ..+...|.. -++++++||+|+
T Consensus 105 ~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~----~~~~~~~fDlIv 180 (274)
T d2b3ta1 105 LPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWF----SALAGQQFAMIV 180 (274)
T ss_dssp SCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTT----GGGTTCCEEEEE
T ss_pred hcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccc----cccCCCceeEEE
Confidence 334567899999998763 44556889999999999998766532 244455542 134567999999
Q ss_pred ec--c-----------hhhccC------------CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 163 CA--V-----------SVQYLQ------------QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 163 ~~--~-----------~l~~~~------------~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|+ + ++.|-+ ....+++++.+.|+|||.+++++.
T Consensus 181 sNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig 238 (274)
T d2b3ta1 181 SNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 238 (274)
T ss_dssp ECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred ecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 98 2 122222 123488999999999999999864
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.04 E-value=7.8e-11 Score=96.42 Aligned_cols=104 Identities=19% Similarity=0.236 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhh---hhc------CCCeEEEEcCCHHHHHhCCCC-------------Cce
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLP---QEV------SYKRVVGHGLNAQELAKNPRL-------------EYF 140 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~---~~~------~~~~v~giD~s~~~l~~~~~~-------------~~~ 140 (282)
....+.+.+...++++.+|||||||+|...+ ... ...+|+++|+++++++.++++ ..+
T Consensus 66 ~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~ 145 (223)
T d1r18a_ 66 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI 145 (223)
T ss_dssp HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred hHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEE
Confidence 3344555554467789999999999886432 221 235899999999988766432 234
Q ss_pred EEeecccccCCCCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 141 IVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 141 ~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
..+|. .....+.+.||.|++..++.++++ .+.+.|||||++++.+.
T Consensus 146 ~~~d~---~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 146 VEGDG---RKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVPVG 191 (223)
T ss_dssp EESCG---GGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEEES
T ss_pred Eeccc---ccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEEEe
Confidence 55555 333344678999999999988863 57889999999988764
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.03 E-value=3e-10 Score=90.89 Aligned_cols=95 Identities=20% Similarity=0.301 Sum_probs=65.3
Q ss_pred CCCeEEEeCCcccch---h----hhhc----CCCeEEEEcCCHHHHHhCCCCC----------------ce---------
Q 023470 97 PGSEVLDLMSSWVSH---L----PQEV----SYKRVVGHGLNAQELAKNPRLE----------------YF--------- 140 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~----~~~~----~~~~v~giD~s~~~l~~~~~~~----------------~~--------- 140 (282)
+..+|+++|||+|.- + .... ...+|+|+|+|+.++++|+... .+
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 456899999988752 1 1111 2358999999999997664110 01
Q ss_pred --------------EEeecccccCCCCCCCceeEEEecchhhccCCH--HHHHHHHHHcccCCcEEEEE
Q 023470 141 --------------IVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP--EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 141 --------------~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~--~~~l~~~~r~LkpgG~li~~ 193 (282)
...+.. ...+.+.+.||+|+|.+||.+++.. .++++++++.|+|||.|++-
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLL--EKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEEECHHHHTTEEEEECCTT--CSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeehHHHHHHHHHHhhhhcc--ccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 111110 1122335789999999999999755 46999999999999998875
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.97 E-value=2.8e-09 Score=88.20 Aligned_cols=90 Identities=16% Similarity=0.198 Sum_probs=67.6
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCCC--CceEEeecccccCCCCCCCceeEEEecchhhccC
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPRL--EYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~~--~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~ 171 (282)
...+|||||||.|..+ ++..|..+++..|+ +..++.+... ..+..+|+. + +.+ ..|++++..+||+.+
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~ri~~~~gd~~--~--~~p--~~D~~~l~~vLh~~~ 153 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMF--A--SVP--QGDAMILKAVCHNWS 153 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTT--T--CCC--CEEEEEEESSGGGSC
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccCCCCCeEEecCCcc--c--ccc--cceEEEEehhhhhCC
Confidence 4578999999988654 44458899999998 4566655443 355566652 2 233 359999999999997
Q ss_pred CHH--HHHHHHHHcccCCcEEEEE
Q 023470 172 QPE--KVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 172 ~~~--~~l~~~~r~LkpgG~li~~ 193 (282)
|.+ .+|+++++.|+|||++++.
T Consensus 154 de~~~~iL~~~~~aL~pgg~llI~ 177 (244)
T d1fp1d2 154 DEKCIEFLSNCHKALSPNGKVIIV 177 (244)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 655 4899999999999998875
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.87 E-value=4.7e-09 Score=84.98 Aligned_cols=93 Identities=16% Similarity=0.187 Sum_probs=68.1
Q ss_pred hCCCCCeEEEeCCcccchhh--hhcCCCeEEEEcCCHHHHHhCC--------CCCceEEeecccccCCCCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSWVSHLP--QEVSYKRVVGHGLNAQELAKNP--------RLEYFIVKDLNQDQKLEFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~--~~~~~~~v~giD~s~~~l~~~~--------~~~~~~~~d~~~~~~l~~~~~s~D~v~~ 163 (282)
.+.++.+|||||||+|...+ ...-+.+|+++|.++++++.++ .+..+..+|. .......+.||.|++
T Consensus 75 ~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~---~~g~~~~~pfD~Iiv 151 (215)
T d1jg1a_ 75 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG---SKGFPPKAPYDVIIV 151 (215)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG---GGCCGGGCCEEEEEE
T ss_pred ccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECcc---ccCCcccCcceeEEe
Confidence 46789999999999886433 2223468999999998876544 2334566665 333334688999999
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
..++.++++ .+...|||||++++.+.
T Consensus 152 ~~a~~~ip~------~l~~qL~~gGrLv~pv~ 177 (215)
T d1jg1a_ 152 TAGAPKIPE------PLIEQLKIGGKLIIPVG 177 (215)
T ss_dssp CSBBSSCCH------HHHHTEEEEEEEEEEEC
T ss_pred ecccccCCH------HHHHhcCCCCEEEEEEc
Confidence 999988863 36778999999998654
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.87 E-value=4.2e-10 Score=97.19 Aligned_cols=109 Identities=19% Similarity=0.237 Sum_probs=72.0
Q ss_pred HHHHhhCCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccc-cCCCCCCC
Q 023470 89 NLYRQMLRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQD-QKLEFDHC 156 (282)
Q Consensus 89 ~~~~~~~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~-~~l~~~~~ 156 (282)
..+...++++.+|||+|||+|...... .+..+|+++|+|+.+++.++.+ ..+..+|+... ..++..+.
T Consensus 137 ~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~ 216 (324)
T d2as0a2 137 LALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGE 216 (324)
T ss_dssp HHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTC
T ss_pred HHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccC
Confidence 344556778999999999987643322 2456899999999998765422 24455554211 12334567
Q ss_pred ceeEEEecc---hhh------ccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 157 SFDAVVCAV---SVQ------YLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 157 s~D~v~~~~---~l~------~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+||+|++.- ... ...+..+++..+.++|||||.|+++....
T Consensus 217 ~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 217 KFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp CEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 899999852 111 11233457889999999999999876443
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.76 E-value=3.4e-09 Score=82.90 Aligned_cols=111 Identities=10% Similarity=0.070 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEeCCcccchhhh-hcCCCeEEEEcCCHHHHHhCCCCC-------ceEEeecccc-cCCC
Q 023470 82 GFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQ-EVSYKRVVGHGLNAQELAKNPRLE-------YFIVKDLNQD-QKLE 152 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~-~~~~~~v~giD~s~~~l~~~~~~~-------~~~~~d~~~~-~~l~ 152 (282)
...+.+.+++...+.++.+|||+|||+|..... ...+.+++++|.|+++++.++.+. .....+...- ....
T Consensus 26 ~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~ 105 (171)
T d1ws6a1 26 RLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAK 105 (171)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHH
T ss_pred HHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhccccccc
Confidence 455677778888888899999999999864432 336789999999999987654321 2222222100 1122
Q ss_pred CCCCceeEEEec--chhhccCCHHHHHHHH--HHcccCCcEEEEEEcC
Q 023470 153 FDHCSFDAVVCA--VSVQYLQQPEKVFAEV--FRVLKPGGVFIVSFSN 196 (282)
Q Consensus 153 ~~~~s~D~v~~~--~~l~~~~~~~~~l~~~--~r~LkpgG~li~~~~~ 196 (282)
....+||+|++. +.. +....+.++ ..+|+|||.++++.+.
T Consensus 106 ~~~~~fD~If~DPPY~~----~~~~~l~~l~~~~ll~~~g~ivie~~~ 149 (171)
T d1ws6a1 106 AQGERFTVAFMAPPYAM----DLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp HTTCCEEEEEECCCTTS----CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred ccCCccceeEEcccccc----CHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence 345789999985 221 223333433 3579999999988653
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.72 E-value=1.7e-09 Score=93.07 Aligned_cols=101 Identities=19% Similarity=0.222 Sum_probs=67.9
Q ss_pred CCCeEEEeCCcccchhhhh-cCCCeEEEEcCCHHHHHhCCCC--------CceEEeecccc-cCCCCCCCceeEEEecc-
Q 023470 97 PGSEVLDLMSSWVSHLPQE-VSYKRVVGHGLNAQELAKNPRL--------EYFIVKDLNQD-QKLEFDHCSFDAVVCAV- 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~-~~~~~v~giD~s~~~l~~~~~~--------~~~~~~d~~~~-~~l~~~~~s~D~v~~~~- 165 (282)
++.+|||++||+|...... .++.+|+++|+|+.+++.++.+ ..++..|...- ..+....++||+|++.-
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP 224 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP 224 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCC
Confidence 6789999999987643222 3677999999999998765422 24455554210 12334467899999862
Q ss_pred --------hhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 166 --------SVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 166 --------~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
......+..+++..+.++|||||.|+++.-..
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 225 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 11122234568899999999999999875443
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.70 E-value=1.6e-08 Score=84.26 Aligned_cols=97 Identities=8% Similarity=0.052 Sum_probs=67.4
Q ss_pred HHHHhhCCCCCeEEEeCCcccchhh--hhcCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCc
Q 023470 89 NLYRQMLRPGSEVLDLMSSWVSHLP--QEVSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCS 157 (282)
Q Consensus 89 ~~~~~~~~~~~~vLDiGcG~~~~~~--~~~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s 157 (282)
..+...+.++.+|||+|||+|.... ...+.++|+++|+|+.+++.++. ...+..+|. ..+. +.+.
T Consensus 99 ~ri~~~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~---~~~~-~~~~ 174 (260)
T d2frna1 99 VRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN---RDFP-GENI 174 (260)
T ss_dssp HHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT---TTCC-CCSC
T ss_pred HHHHhhcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcch---HHhc-cCCC
Confidence 3455667899999999999876432 22356799999999988754431 123445554 4444 3578
Q ss_pred eeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 158 FDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 158 ~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
||.|++..- +....++.++.++|||||.+.+.
T Consensus 175 ~D~Ii~~~p----~~~~~~l~~a~~~l~~gG~lh~~ 206 (260)
T d2frna1 175 ADRILMGYV----VRTHEFIPKALSIAKDGAIIHYH 206 (260)
T ss_dssp EEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEE
T ss_pred CCEEEECCC----CchHHHHHHHHhhcCCCCEEEEE
Confidence 999997632 23355788899999999998653
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.65 E-value=1.6e-08 Score=80.39 Aligned_cols=110 Identities=13% Similarity=0.201 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCC-------CCceEEeecccccC--
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQDQK-- 150 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~~~~-- 150 (282)
+.+.+.+.+. ..++..|||++||+|.+ ++...+.++|+|+|.+++|++.++. ...+...++.....
T Consensus 11 ll~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~ 88 (192)
T d1m6ya2 11 MVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL 88 (192)
T ss_dssp THHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred HHHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHH
Confidence 3344444442 45788999999998864 4444578999999999999976642 22344554421100
Q ss_pred CCCCCCceeEEEecchh---------hccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 151 LEFDHCSFDAVVCAVSV---------QYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 151 l~~~~~s~D~v~~~~~l---------~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
-.+..++||.|+.-..+ ..+......+..+.++|+|||++++..
T Consensus 89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 12345789999877554 223344568999999999999988654
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.56 E-value=2.1e-08 Score=85.93 Aligned_cols=107 Identities=15% Similarity=0.136 Sum_probs=70.3
Q ss_pred HHhhCCCCCeEEEeCCcccchhhh-h-cCCCeEEEEcCCHHHHHhCCC----------CCceEEeecccc-cCCCCCCCc
Q 023470 91 YRQMLRPGSEVLDLMSSWVSHLPQ-E-VSYKRVVGHGLNAQELAKNPR----------LEYFIVKDLNQD-QKLEFDHCS 157 (282)
Q Consensus 91 ~~~~~~~~~~vLDiGcG~~~~~~~-~-~~~~~v~giD~s~~~l~~~~~----------~~~~~~~d~~~~-~~l~~~~~s 157 (282)
+...+.++.+|||++||+|..... . .+..+|+++|+|+.+++.++. ...++..|+... ..+....++
T Consensus 138 l~~~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~ 217 (317)
T d2b78a2 138 LINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLT 217 (317)
T ss_dssp HHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred HHHHhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCC
Confidence 345566889999999998765322 2 255689999999988764431 124556665211 112224568
Q ss_pred eeEEEec---c------hhhccCCHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 158 FDAVVCA---V------SVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 158 ~D~v~~~---~------~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
||+|++. + ......+..++++.+.++|+|||.|+++...+
T Consensus 218 fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 218 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 9999985 2 11122244568999999999999999886544
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.54 E-value=1e-08 Score=78.55 Aligned_cols=97 Identities=12% Similarity=0.037 Sum_probs=61.1
Q ss_pred CCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCC---------CCceEEeecccccCCCCCCCceeEEEecc
Q 023470 97 PGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
++.+|||+|||+|...... .+..+|+++|.++.+++.+++ ...++..|.. ..+....++||+|++.-
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~--~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAE--RAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHH--HHHHHBCSCEEEEEECC
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccc--ccccccccccceeEech
Confidence 5789999999998654322 345699999999998854321 1234444442 22334467899999851
Q ss_pred hhhccCCHHHHHHHH--HHcccCCcEEEEEEcC
Q 023470 166 SVQYLQQPEKVFAEV--FRVLKPGGVFIVSFSN 196 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~--~r~LkpgG~li~~~~~ 196 (282)
-. ........+..+ .++|+|||.++++.+.
T Consensus 92 Py-~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~ 123 (152)
T d2esra1 92 PY-AKETIVATIEALAAKNLLSEQVMVVCETDK 123 (152)
T ss_dssp SS-HHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred hh-ccchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence 00 011123344544 3679999999998654
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.51 E-value=3.1e-08 Score=78.87 Aligned_cols=62 Identities=15% Similarity=0.214 Sum_probs=47.1
Q ss_pred CCCeEEEeCCcccchh--hhhcCCCeEEEEcCCHHHHHhCCCC---CceEEeecccccCCCCCCCceeEEEec
Q 023470 97 PGSEVLDLMSSWVSHL--PQEVSYKRVVGHGLNAQELAKNPRL---EYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~--~~~~~~~~v~giD~s~~~l~~~~~~---~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.+.+|||+|||+|... +...+..+|+|+|+++.+++.++.+ .++...|+ .++ +++||+|+++
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~---~~l---~~~fD~Vi~N 114 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADV---SEI---SGKYDTWIMN 114 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCG---GGC---CCCEEEEEEC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEeh---hhc---CCcceEEEeC
Confidence 5789999999998642 2333567899999999999766543 46777777 444 3689999998
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.48 E-value=2.8e-07 Score=75.86 Aligned_cols=90 Identities=8% Similarity=0.059 Sum_probs=66.8
Q ss_pred CCCeEEEeCCcccchh---hhhcCCCeEEEEcCCHHHHHhCCC--CCceEEeecccccCCCCCCCceeEEEecchhhccC
Q 023470 97 PGSEVLDLMSSWVSHL---PQEVSYKRVVGHGLNAQELAKNPR--LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQ 171 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~---~~~~~~~~v~giD~s~~~l~~~~~--~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~ 171 (282)
...+|||||||.|... +...+..+++..|. +..++.+.. ...+..+|+. + +.+ .+|++++.++||+.+
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~rv~~~~gD~f---~-~~p--~aD~~~l~~vLHdw~ 152 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMF---T-SIP--NADAVLLKYILHNWT 152 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTT---T-CCC--CCSEEEEESCGGGSC
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCcccCceEEEecCcc---c-CCC--CCcEEEEEeecccCC
Confidence 3467999999988654 44458899999998 455665543 3456666662 2 222 479999999999998
Q ss_pred CHH--HHHHHHHHcccCC---cEEEEE
Q 023470 172 QPE--KVFAEVFRVLKPG---GVFIVS 193 (282)
Q Consensus 172 ~~~--~~l~~~~r~Lkpg---G~li~~ 193 (282)
|.+ ++|+++++.|+|| |++++.
T Consensus 153 d~~~~~iL~~~~~al~pgg~~~~lli~ 179 (244)
T d1fp2a2 153 DKDCLRILKKCKEAVTNDGKRGKVTII 179 (244)
T ss_dssp HHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred hHHHHHHHHHHHHHcCcccCCcEEEEE
Confidence 765 4899999999999 666654
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.46 E-value=3.6e-08 Score=83.68 Aligned_cols=103 Identities=13% Similarity=0.046 Sum_probs=66.1
Q ss_pred hCCCCCeEEEeCCcccchhh-hhcCCCeEEEEcCCHHHHHhCCCC----------CceEEeecccc-cCCCCCCCceeEE
Q 023470 94 MLRPGSEVLDLMSSWVSHLP-QEVSYKRVVGHGLNAQELAKNPRL----------EYFIVKDLNQD-QKLEFDHCSFDAV 161 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~-~~~~~~~v~giD~s~~~l~~~~~~----------~~~~~~d~~~~-~~l~~~~~s~D~v 161 (282)
...++.+|||++||+|.... ....+.+|+++|.|+.+++.++.+ ..+++.|+..- .......++||+|
T Consensus 129 ~~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 129 TADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp HSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred hccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 34567899999999875432 223677999999999998766532 24555555210 1112234789999
Q ss_pred Eec---chh------hcc-CCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 162 VCA---VSV------QYL-QQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 162 ~~~---~~l------~~~-~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++. ++. ..+ .+...+++.+.++|+|||.+++.+.+
T Consensus 209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 984 221 111 23355778889999999987665444
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.45 E-value=1.8e-07 Score=78.07 Aligned_cols=97 Identities=9% Similarity=0.080 Sum_probs=59.7
Q ss_pred CCCeEEEeCCcccchh--hhhcCCCeEEEEcCCHHHHHhCCCCC---------ceEEeecccccCCCCCCCceeEEEec-
Q 023470 97 PGSEVLDLMSSWVSHL--PQEVSYKRVVGHGLNAQELAKNPRLE---------YFIVKDLNQDQKLEFDHCSFDAVVCA- 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~--~~~~~~~~v~giD~s~~~l~~~~~~~---------~~~~~d~~~~~~l~~~~~s~D~v~~~- 164 (282)
+..+|||+|||.|... ....+..+|+|+|+|+++++.++.+. .+...+.. ..++...++||+|+|+
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~--~~~~~~~~~fDlIVsNP 187 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFL--EPFKEKFASIEMILSNP 187 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTT--GGGGGGTTTCCEEEECC
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccc--cccccccCcccEEEEcc
Confidence 3468999999876532 22348899999999999987665321 12233331 2233334789999999
Q ss_pred -ch---------hhccC--------CHHHHHHH-HHHcccCCcEEEEEEc
Q 023470 165 -VS---------VQYLQ--------QPEKVFAE-VFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 -~~---------l~~~~--------~~~~~l~~-~~r~LkpgG~li~~~~ 195 (282)
++ ..|-| |--.++++ +.+.|+|||.+++++.
T Consensus 188 PYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig 237 (271)
T d1nv8a_ 188 PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 237 (271)
T ss_dssp CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred cccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11 11111 11112222 5678999999999965
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.30 E-value=4.9e-07 Score=74.33 Aligned_cols=89 Identities=13% Similarity=0.109 Sum_probs=64.1
Q ss_pred CCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCC--CCceEEeecccccCCCCCCCceeEEEecchhhccCC
Q 023470 98 GSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPR--LEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQ 172 (282)
Q Consensus 98 ~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~--~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~ 172 (282)
..+|||||||.|.. +++..|..++++.|+.. .++.+.. ...+...|+. +.+| . .|+++...++|+.++
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~~~~r~~~~~~d~~--~~~P--~--ad~~~l~~vlh~~~d 154 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAPSYPGVEHVGGDMF--VSIP--K--ADAVFMKWICHDWSD 154 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCCCCTTEEEEECCTT--TCCC--C--CSCEECSSSSTTSCH
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcccCCceEEeccccc--ccCC--C--cceEEEEEEeecCCH
Confidence 46899999998764 44555899999999965 3444333 3355666653 2333 2 467788889988865
Q ss_pred H--HHHHHHHHHcccCCcEEEEE
Q 023470 173 P--EKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 173 ~--~~~l~~~~r~LkpgG~li~~ 193 (282)
. ..+|+++++.|+|||++++.
T Consensus 155 ~~~~~iL~~~~~al~pgg~~li~ 177 (243)
T d1kyza2 155 EHCLKFLKNCYEALPDNGKVIVA 177 (243)
T ss_dssp HHHHHHHHHHHHHCCSSSCEEEE
T ss_pred HHHHHHHHHHHHhcCCCceEEEE
Confidence 4 44999999999999998875
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.30 E-value=2.1e-07 Score=74.39 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=43.4
Q ss_pred CCCeEEEeCCcccchhh--hhcCCCeEEEEcCCHHHHHhCCCC-------CceEEeecccccCCCCCCCceeEEEec
Q 023470 97 PGSEVLDLMSSWVSHLP--QEVSYKRVVGHGLNAQELAKNPRL-------EYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~--~~~~~~~v~giD~s~~~l~~~~~~-------~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
.+.+|||+|||+|.... ...+..+|+|+|+|+.+++.++.+ ..+...|. ..+ ++.||+|+++
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~---~~~---~~~fD~Vi~n 116 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDV---SEF---NSRVDIVIMN 116 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCG---GGC---CCCCSEEEEC
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECch---hhh---CCcCcEEEEc
Confidence 57899999999986532 223556999999999988755432 13444444 333 4679999998
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.27 E-value=4e-07 Score=73.40 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=61.0
Q ss_pred CCCeEEEeCCcccc---hhhhhc-CCCeEEEEcCCHHHHHhCCC---------CCceEEeecccc-cCC--CCCCCceeE
Q 023470 97 PGSEVLDLMSSWVS---HLPQEV-SYKRVVGHGLNAQELAKNPR---------LEYFIVKDLNQD-QKL--EFDHCSFDA 160 (282)
Q Consensus 97 ~~~~vLDiGcG~~~---~~~~~~-~~~~v~giD~s~~~l~~~~~---------~~~~~~~d~~~~-~~l--~~~~~s~D~ 160 (282)
+..+|||+|||+|. .++... .+.+|+++|+++++++.++. ...+..++.... ..+ .+..++||+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 45689999997664 333333 56899999999988865542 124555554311 111 134578999
Q ss_pred EEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 161 VVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 161 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|+.-..- ........+.+..++|||||.+++.
T Consensus 136 ifiD~~~-~~~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 136 VFLDHWK-DRYLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp EEECSCG-GGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred eeecccc-cccccHHHHHHHhCccCCCcEEEEe
Confidence 9986321 1111233577888999999988764
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.22 E-value=1.8e-06 Score=73.91 Aligned_cols=109 Identities=13% Similarity=0.095 Sum_probs=70.0
Q ss_pred HHHHHHHHhhC--CCCCeEEEeCCcccchhhhhc--------CCCeEEEEcCCHHHHHhCCC-------CCceEEeeccc
Q 023470 85 STLTNLYRQML--RPGSEVLDLMSSWVSHLPQEV--------SYKRVVGHGLNAQELAKNPR-------LEYFIVKDLNQ 147 (282)
Q Consensus 85 ~~~~~~~~~~~--~~~~~vLDiGcG~~~~~~~~~--------~~~~v~giD~s~~~l~~~~~-------~~~~~~~d~~~ 147 (282)
..+..++...+ .++.+|||.|||+|..+.... ...+++|+|+++.++..|+. .......+.
T Consensus 103 ~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~-- 180 (328)
T d2f8la1 103 FIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDG-- 180 (328)
T ss_dssp HHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCT--
T ss_pred HHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccc--
Confidence 33444444332 356789999999987664431 34589999999988865541 122333332
Q ss_pred ccCCCCCCCceeEEEec--chhhccC---------------C-HHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 148 DQKLEFDHCSFDAVVCA--VSVQYLQ---------------Q-PEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 148 ~~~l~~~~~s~D~v~~~--~~l~~~~---------------~-~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
........||+|+++ +...... + ...++..+.+.|||||++++.+|+.
T Consensus 181 --~~~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~ 246 (328)
T d2f8la1 181 --LANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 246 (328)
T ss_dssp --TSCCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred --ccccccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence 122345789999999 3211110 1 1226999999999999999998865
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=1.6e-06 Score=71.42 Aligned_cols=67 Identities=9% Similarity=-0.011 Sum_probs=44.1
Q ss_pred CCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCCC-------ceEEe--ecccc--c-CCCCCCCceeEEE
Q 023470 98 GSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRLE-------YFIVK--DLNQD--Q-KLEFDHCSFDAVV 162 (282)
Q Consensus 98 ~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~-------~~~~~--d~~~~--~-~l~~~~~s~D~v~ 162 (282)
..+|||+|||+|.. ++...+.++++|+|+|+++++.|+.+. ...+. +.... . -....+++||+|+
T Consensus 62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~iv 141 (250)
T d2h00a1 62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM 141 (250)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEE
Confidence 46899999998763 344457899999999999997665331 12222 22110 1 1123457899999
Q ss_pred ec
Q 023470 163 CA 164 (282)
Q Consensus 163 ~~ 164 (282)
|+
T Consensus 142 sN 143 (250)
T d2h00a1 142 CN 143 (250)
T ss_dssp EC
T ss_pred ec
Confidence 99
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.20 E-value=2.4e-06 Score=68.51 Aligned_cols=97 Identities=21% Similarity=0.252 Sum_probs=65.7
Q ss_pred CCCCeEEEeCCcccchhhhh----cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhhcc-
Q 023470 96 RPGSEVLDLMSSWVSHLPQE----VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYL- 170 (282)
Q Consensus 96 ~~~~~vLDiGcG~~~~~~~~----~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~- 170 (282)
.++.+|||.|||+|..+... .....++|+|+++.++..++.. .....+. ... .....||+|+++--....
T Consensus 18 ~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~-~~~~~~~---~~~-~~~~~fd~ii~npP~~~~~ 92 (223)
T d2ih2a1 18 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWA-EGILADF---LLW-EPGEAFDLILGNPPYGIVG 92 (223)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTE-EEEESCG---GGC-CCSSCEEEEEECCCCCCBS
T ss_pred CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccc-eeeeeeh---hcc-ccccccceecccCcccccc
Confidence 46789999999999765433 2567899999999877655433 2334443 222 234679999998332111
Q ss_pred --C-------------------------CH-HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 171 --Q-------------------------QP-EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 171 --~-------------------------~~-~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
. +. ..++..+.+.|||||++.+.+|+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~ 147 (223)
T d2ih2a1 93 EASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 147 (223)
T ss_dssp CTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred ccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence 0 11 236788999999999999988864
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=1.2e-06 Score=68.62 Aligned_cols=109 Identities=9% Similarity=-0.053 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCC--------CCceEEeecccccCCC
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQDQKLE 152 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~~~l~ 152 (282)
..+.+...+...+ .+.+|||++||+|...... .+..+|+++|.++++++..+. ...++..|.. .-+.
T Consensus 30 vre~lfn~l~~~~-~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~--~~l~ 106 (183)
T d2fpoa1 30 VRETLFNWLAPVI-VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAM--SFLA 106 (183)
T ss_dssp HHHHHHHHHHHHH-TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHH--HHHS
T ss_pred HHHHHHhhhhccc-chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeeccc--cccc
Confidence 4445555554433 5689999999998765433 256689999999988754332 1123333331 2233
Q ss_pred CCCCceeEEEecchhhccCCHHHHHHHHHH--cccCCcEEEEEEc
Q 023470 153 FDHCSFDAVVCAVSVQYLQQPEKVFAEVFR--VLKPGGVFIVSFS 195 (282)
Q Consensus 153 ~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r--~LkpgG~li~~~~ 195 (282)
.....||+|++.==. .....+..+..+.+ +|+++|.++++..
T Consensus 107 ~~~~~fDlIf~DPPY-~~~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 107 QKGTPHNIVFVDPPF-RRGLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp SCCCCEEEEEECCSS-STTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ccccccCEEEEcCcc-ccchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 356789999996211 11234566666654 6999999999854
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.13 E-value=2e-06 Score=71.82 Aligned_cols=101 Identities=10% Similarity=0.131 Sum_probs=65.8
Q ss_pred hCCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC------------------CCceEEeecccccCCCC
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR------------------LEYFIVKDLNQDQKLEF 153 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~------------------~~~~~~~d~~~~~~l~~ 153 (282)
..++..+||-||+|.|..+.... +..+|+.+|+++++++.++. ..+++.+|.. .-+.
T Consensus 69 ~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~--~~l~- 145 (276)
T d1mjfa_ 69 AHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGF--EFIK- 145 (276)
T ss_dssp HSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHH--HHHH-
T ss_pred cCCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHH--HHHh-
Confidence 34567899999999775543322 55689999999999876542 1133444431 1111
Q ss_pred CCCceeEEEecchhhccC----CHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 154 DHCSFDAVVCAVSVQYLQ----QPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 154 ~~~s~D~v~~~~~l~~~~----~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.+++||+|++-..-..-+ --.++++.+.+.|+|||.+++...++
T Consensus 146 ~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~ 193 (276)
T d1mjfa_ 146 NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSV 193 (276)
T ss_dssp HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred ccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCc
Confidence 246899999754321111 11468999999999999999865443
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=2.9e-06 Score=68.41 Aligned_cols=94 Identities=20% Similarity=0.238 Sum_probs=63.1
Q ss_pred CCCeEEEeCCcccch---hhhhc-CCCeEEEEcCCHHHHHhCC---------CCCceEEeecccc-cCC--CCCCCceeE
Q 023470 97 PGSEVLDLMSSWVSH---LPQEV-SYKRVVGHGLNAQELAKNP---------RLEYFIVKDLNQD-QKL--EFDHCSFDA 160 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~-~~~~v~giD~s~~~l~~~~---------~~~~~~~~d~~~~-~~l--~~~~~s~D~ 160 (282)
+..+|||||||+|.. ++... .+++|+.+|++++..+.++ ....+.+++.... ..+ ....++||+
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ 138 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 138 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence 457899999987653 33333 4789999999988765443 2234555554211 111 123578999
Q ss_pred EEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 161 VVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 161 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|+...- -.+-...+..+.+.|+|||.+++.
T Consensus 139 ifiD~d---k~~y~~~~~~~~~lL~~GGvii~D 168 (219)
T d2avda1 139 AVVDAD---KENCSAYYERCLQLLRPGGILAVL 168 (219)
T ss_dssp EEECSC---STTHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeCC---HHHHHHHHHHHHHHhcCCcEEEEe
Confidence 998642 124466889999999999999987
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.08 E-value=2.8e-06 Score=72.11 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=65.8
Q ss_pred CCCCCeEEEeCCcccchhhhh---cCCCeEEEEcCCHHHHHhCCC-------------CCceEEeecccccCCCCCCCce
Q 023470 95 LRPGSEVLDLMSSWVSHLPQE---VSYKRVVGHGLNAQELAKNPR-------------LEYFIVKDLNQDQKLEFDHCSF 158 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~---~~~~~v~giD~s~~~l~~~~~-------------~~~~~~~d~~~~~~l~~~~~s~ 158 (282)
.+...+||.||.|.|...... .+..+|+++|+++++++.+++ +.+..++|.. .-+.-.+++|
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~--~~l~~~~~~y 152 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDAR--AYLERTEERY 152 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHH--HHHHHCCCCE
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHH--HHhhhcCCcc
Confidence 456678999999977654433 256799999999999875542 1234455542 1122235689
Q ss_pred eEEEecchhhcc-C------CHHHHHHHHHHcccCCcEEEEEEc
Q 023470 159 DAVVCAVSVQYL-Q------QPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 159 D~v~~~~~l~~~-~------~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
|+|++-..=.+. . --.++++.+.+.|+|||.+++...
T Consensus 153 DvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~ 196 (312)
T d1uira_ 153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (312)
T ss_dssp EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence 999965321111 0 125689999999999999988643
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.06 E-value=1.5e-06 Score=68.18 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHHhCCCC---------CceEEeecccc-cC
Q 023470 83 FISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELAKNPRL---------EYFIVKDLNQD-QK 150 (282)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~---------~~~~~~d~~~~-~~ 150 (282)
..+.+..++... .++.+|||++||+|...... .+..+|+++|.++++++.++.+ ..+...|+... ..
T Consensus 28 vrealFn~l~~~-~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~ 106 (182)
T d2fhpa1 28 VKESIFNMIGPY-FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQ 106 (182)
T ss_dssp HHHHHHHHHCSC-CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhh
Confidence 444555554332 36789999999998754432 2556899999999887654321 23445554211 11
Q ss_pred CCCCCCceeEEEec--chhhccCCHHHHHHHHHH--cccCCcEEEEEEcC
Q 023470 151 LEFDHCSFDAVVCA--VSVQYLQQPEKVFAEVFR--VLKPGGVFIVSFSN 196 (282)
Q Consensus 151 l~~~~~s~D~v~~~--~~l~~~~~~~~~l~~~~r--~LkpgG~li~~~~~ 196 (282)
+.-....||+|++. +. ..+....+..+.. +|+|+|.++++...
T Consensus 107 ~~~~~~~fDlIflDPPY~---~~~~~~~l~~i~~~~~L~~~giIi~E~~~ 153 (182)
T d2fhpa1 107 FYEEKLQFDLVLLDPPYA---KQEIVSQLEKMLERQLLTNEAVIVCETDK 153 (182)
T ss_dssp HHHTTCCEEEEEECCCGG---GCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred hcccCCCcceEEechhhh---hhHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence 22234679999985 22 2344667777754 69999999988654
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.97 E-value=1.1e-05 Score=67.81 Aligned_cols=102 Identities=13% Similarity=0.153 Sum_probs=67.7
Q ss_pred CCCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCCC------------CceEEeecccccCCCCCCCcee
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPRL------------EYFIVKDLNQDQKLEFDHCSFD 159 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~~------------~~~~~~d~~~~~~l~~~~~s~D 159 (282)
.+...+||-||.|.|..+.... +..+|+++|+++++++.+++. .+..+.|.. .-+.-.+++||
T Consensus 87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~--~~l~~~~~~yD 164 (295)
T d1inla_ 87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGA--EYVRKFKNEFD 164 (295)
T ss_dssp SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHH--HHGGGCSSCEE
T ss_pred CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHH--HHHhcCCCCCC
Confidence 4556899999998776544432 457999999999998766431 234444432 22333457899
Q ss_pred EEEecchhhcc-C----CHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 160 AVVCAVSVQYL-Q----QPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 160 ~v~~~~~l~~~-~----~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
+|++-..-... + --.++++.+.+.|+|||.+++...++.
T Consensus 165 vIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~ 208 (295)
T d1inla_ 165 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPF 208 (295)
T ss_dssp EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred EEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChh
Confidence 99986432211 1 125699999999999999998876653
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=1.8e-05 Score=61.55 Aligned_cols=100 Identities=20% Similarity=0.354 Sum_probs=65.0
Q ss_pred hCCCCCeEEEeCCc---ccchhhhhc-CCCeEEEEcCCHHHHHhCCCCCceEEeecccccC-----CCCCCCceeEEEec
Q 023470 94 MLRPGSEVLDLMSS---WVSHLPQEV-SYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQK-----LEFDHCSFDAVVCA 164 (282)
Q Consensus 94 ~~~~~~~vLDiGcG---~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~-----l~~~~~s~D~v~~~ 164 (282)
.++++.+|||+||+ |..++.... ....++|+|+.+-. .-....+..+++..... .....+.+|+|+|-
T Consensus 19 l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~---~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD 95 (180)
T d1ej0a_ 19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD---PIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSD 95 (180)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC---CCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc---ccCCceEeecccccchhhhhhhhhccCcceeEEEec
Confidence 46788999999994 444444433 56899999987621 11223456666643210 11235679999999
Q ss_pred chhhccCCH-----------HHHHHHHHHcccCCcEEEEEEcC
Q 023470 165 VSVQYLQQP-----------EKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 165 ~~l~~~~~~-----------~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.+..-..+. ...+.-+.++||+||.+++-+-.
T Consensus 96 ~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 96 MAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 765443222 12677788999999999998654
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.80 E-value=3.8e-05 Score=64.25 Aligned_cols=101 Identities=19% Similarity=0.174 Sum_probs=67.8
Q ss_pred CCCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCCC------------CceEEeecccccCC-CCCCCce
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPRL------------EYFIVKDLNQDQKL-EFDHCSF 158 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~~------------~~~~~~d~~~~~~l-~~~~~s~ 158 (282)
.+...+||=||-|.|..+.... +..+|+++|+++++++.++.. .+.+++|.. .-+ ...+++|
T Consensus 78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~--~~l~~~~~~~y 155 (290)
T d1xj5a_ 78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGV--AFLKNAAEGSY 155 (290)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHH--HHHHTSCTTCE
T ss_pred CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHH--HHHhhccccCc
Confidence 3556789999998776554433 446899999999998766431 234444432 112 2335689
Q ss_pred eEEEecchhhccC----CHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 159 DAVVCAVSVQYLQ----QPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 159 D~v~~~~~l~~~~----~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
|+|++-..-..-. --.++++.+.+.|+|||.+++...++
T Consensus 156 DvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 198 (290)
T d1xj5a_ 156 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL 198 (290)
T ss_dssp EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred cEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 9999853311110 12568999999999999999987654
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.74 E-value=4.6e-05 Score=63.18 Aligned_cols=102 Identities=13% Similarity=0.115 Sum_probs=68.3
Q ss_pred hCCCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCC------------CCceEEeecccccCCCCCCCce
Q 023470 94 MLRPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPR------------LEYFIVKDLNQDQKLEFDHCSF 158 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~------------~~~~~~~d~~~~~~l~~~~~s~ 158 (282)
..+...+||-||-|.|....... +..+|+.+|++++.++.++. +.+..+.|.. .-+.-.+++|
T Consensus 72 ~~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~--~~l~~~~~~y 149 (274)
T d1iy9a_ 72 THPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGF--MHIAKSENQY 149 (274)
T ss_dssp HSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSH--HHHHTCCSCE
T ss_pred ccCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHH--HHHhhcCCCC
Confidence 34566899999998776554433 45799999999998876542 1234444432 1122345789
Q ss_pred eEEEecchhhccC----CHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 159 DAVVCAVSVQYLQ----QPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 159 D~v~~~~~l~~~~----~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
|+|++-..-..-. --.++++.+.+.|+|||.++....++
T Consensus 150 DvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~ 192 (274)
T d1iy9a_ 150 DVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP 192 (274)
T ss_dssp EEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred CEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCc
Confidence 9999874311110 13568999999999999999876654
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.72 E-value=1.8e-05 Score=61.70 Aligned_cols=102 Identities=19% Similarity=0.278 Sum_probs=67.0
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC----CCceEEeecccc-cCC-CCCCCceeEEEecchh
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR----LEYFIVKDLNQD-QKL-EFDHCSFDAVVCAVSV 167 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~----~~~~~~~d~~~~-~~l-~~~~~s~D~v~~~~~l 167 (282)
..+++.++|..||.|.+..... ...+|+|+|..+.++..++. ...++....... ..+ ....+.+|.|+.-..+
T Consensus 16 ~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DLGv 95 (182)
T d1wg8a2 16 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGV 95 (182)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEECSC
T ss_pred CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEEEccC
Confidence 4578999999998776544332 56899999999999876543 223334433211 111 1334679999987544
Q ss_pred h--ccCC-------HHHHHHHHHHcccCCcEEEEEEcC
Q 023470 168 Q--YLQQ-------PEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 168 ~--~~~~-------~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
. ++.+ ....|.....+|+|||.+++..-+
T Consensus 96 Ss~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh 133 (182)
T d1wg8a2 96 SSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH 133 (182)
T ss_dssp CHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred CHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence 3 2222 234788899999999999876544
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.71 E-value=4.3e-05 Score=60.65 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=63.2
Q ss_pred CCCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHh------CCCCC--ceEEeecccccCCCCCCCceeEEEecc
Q 023470 97 PGSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAK------NPRLE--YFIVKDLNQDQKLEFDHCSFDAVVCAV 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~------~~~~~--~~~~~d~~~~~~l~~~~~s~D~v~~~~ 165 (282)
++.+|+|+|||.|. .++-..+..+++.+|.+.+-+.. .-+.. ......+ +++. .+.+||+|+|-.
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~---E~~~-~~~~fD~V~sRA 140 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRV---EEFP-SEPPFDGVISRA 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCT---TTSC-CCSCEEEEECSC
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccch---hhhc-cccccceehhhh
Confidence 45789999998654 45555688999999999864421 11222 3333333 4443 356899999854
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
+.....++.-+...+++||.+++--
T Consensus 141 ----~~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 141 ----FASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ----SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ----hcCHHHHHHHHHHhcCCCcEEEEEC
Confidence 3577889999999999999988763
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=4.4e-05 Score=63.63 Aligned_cols=102 Identities=17% Similarity=0.083 Sum_probs=66.3
Q ss_pred CCCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCC------------CCceEEeecccccCCCCCCCcee
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPR------------LEYFIVKDLNQDQKLEFDHCSFD 159 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~------------~~~~~~~d~~~~~~l~~~~~s~D 159 (282)
.+...+||-||-|.|....... +..+|+.+|+++++++.+++ ..+..+.|.. .-+.-..++||
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~--~~l~~~~~~yD 153 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGF--EFMKQNQDAFD 153 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHH--HHHHTCSSCEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHH--HHHhcCCCCCC
Confidence 3456789999998775544433 46799999999998876642 1234444432 12222356899
Q ss_pred EEEecchhhcc-C---CHHHHHHHHHHcccCCcEEEEEEcCch
Q 023470 160 AVVCAVSVQYL-Q---QPEKVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 160 ~v~~~~~l~~~-~---~~~~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
+|++-..--.- + --.++++.+.+.|+|||.+++...++.
T Consensus 154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~ 196 (285)
T d2o07a1 154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQW 196 (285)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchh
Confidence 99986421110 0 113489999999999999998866543
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.67 E-value=4.9e-05 Score=61.41 Aligned_cols=97 Identities=9% Similarity=-0.030 Sum_probs=57.4
Q ss_pred CCCeEEEeCCcccch---hhhh----cCCCeEEEEcCCHHHHHhC---CCCCceEEeecccccCC-CCCCCceeEEEecc
Q 023470 97 PGSEVLDLMSSWVSH---LPQE----VSYKRVVGHGLNAQELAKN---PRLEYFIVKDLNQDQKL-EFDHCSFDAVVCAV 165 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~----~~~~~v~giD~s~~~l~~~---~~~~~~~~~d~~~~~~l-~~~~~s~D~v~~~~ 165 (282)
++.+|||||++.|.. ++.. ...++|+|+|+.+...... .....+..+|......+ .+....+|.|+.-.
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~ 159 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 159 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence 456899999955432 2221 2568999999987544322 23345667765432222 13345678777644
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
. |..+....--+....|+|||++++...
T Consensus 160 ~--H~~~~v~~~~~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 160 A--HANTFNIMKWAVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp S--CSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred C--cchHHHHHHHHHhcccCcCCEEEEEcC
Confidence 3 333222221246689999999999854
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.66 E-value=4.6e-05 Score=64.16 Aligned_cols=101 Identities=13% Similarity=0.045 Sum_probs=64.4
Q ss_pred CCCCCeEEEeCCcccchhhhhc---CCCeEEEEcCCHHHHHhCCCC------------CceEEeecccccCCCCCCCcee
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV---SYKRVVGHGLNAQELAKNPRL------------EYFIVKDLNQDQKLEFDHCSFD 159 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~---~~~~v~giD~s~~~l~~~~~~------------~~~~~~d~~~~~~l~~~~~s~D 159 (282)
.+...+||-||-|.|..+.... +..+|+.+|+++++++.++.. .++.+.|.. .-+.-.+++||
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~--~~l~~~~~~yD 181 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGF--EFLKNHKNEFD 181 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHH--HHHHHCTTCEE
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHH--HHHHhCCCCCC
Confidence 4556789999998776554433 446999999999998766431 122333321 11222357899
Q ss_pred EEEecchhhccC----CHHHHHHHHHHcccCCcEEEEEEcCc
Q 023470 160 AVVCAVSVQYLQ----QPEKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 160 ~v~~~~~l~~~~----~~~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+|++-..-..-+ --.++++.+.+.|+|||.++....++
T Consensus 182 vII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~ 223 (312)
T d2b2ca1 182 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV 223 (312)
T ss_dssp EEEECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence 999864321111 11448999999999999999876554
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.65 E-value=9.1e-05 Score=59.82 Aligned_cols=111 Identities=16% Similarity=0.200 Sum_probs=63.9
Q ss_pred HHHHHHh-hCCCCCeEEEeCCc---ccchhhhhcCCCeEEEEcCCHHHHHh--C-CCCCceEEeecccccCCCCCCCcee
Q 023470 87 LTNLYRQ-MLRPGSEVLDLMSS---WVSHLPQEVSYKRVVGHGLNAQELAK--N-PRLEYFIVKDLNQDQKLEFDHCSFD 159 (282)
Q Consensus 87 ~~~~~~~-~~~~~~~vLDiGcG---~~~~~~~~~~~~~v~giD~s~~~l~~--~-~~~~~~~~~d~~~~~~l~~~~~s~D 159 (282)
+..+..+ .+.+.++|+|+||| |..+++...+...|.|+|+--...+. . ......++.......-...+.+.+|
T Consensus 55 l~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~D 134 (257)
T d2p41a1 55 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCD 134 (257)
T ss_dssp HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCS
T ss_pred HHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcCC
Confidence 3344333 46688899999995 44455544455678888874221110 0 0111111111111111224567899
Q ss_pred EEEecchhhccCCHH-------HHHHHHHHcccCCcEEEEEEcCch
Q 023470 160 AVVCAVSVQYLQQPE-------KVFAEVFRVLKPGGVFIVSFSNRM 198 (282)
Q Consensus 160 ~v~~~~~l~~~~~~~-------~~l~~~~r~LkpgG~li~~~~~~~ 198 (282)
+|+|-.+-. .+++. ++++-+.++|+|||.|++-+..+.
T Consensus 135 ~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py 179 (257)
T d2p41a1 135 TLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY 179 (257)
T ss_dssp EEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC
T ss_pred EEEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCC
Confidence 999987632 33332 367778899999999999887653
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.64 E-value=3.6e-05 Score=59.94 Aligned_cols=111 Identities=19% Similarity=0.084 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc--CCCeEEEEcCCHHHHHhCCC--------CCceE--Eeeccccc
Q 023470 82 GFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV--SYKRVVGHGLNAQELAKNPR--------LEYFI--VKDLNQDQ 149 (282)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~--~~~~v~giD~s~~~l~~~~~--------~~~~~--~~d~~~~~ 149 (282)
...+.+...+...+ .+.+|||+.||+|..-.... +..+|+.+|.+.+.+...+. ..... ..+.....
T Consensus 29 ~vrealFn~l~~~~-~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l 107 (183)
T d2ifta1 29 RVKETLFNWLMPYI-HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL 107 (183)
T ss_dssp HHHHHHHHHHHHHH-TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT
T ss_pred HHHHHHHHHhhhhc-ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccc
Confidence 34455555555433 56799999999987544433 66799999999987643221 11122 22211102
Q ss_pred CCCCCCCceeEEEec--chhhccCCHHHHHHHHHH--cccCCcEEEEEEcC
Q 023470 150 KLEFDHCSFDAVVCA--VSVQYLQQPEKVFAEVFR--VLKPGGVFIVSFSN 196 (282)
Q Consensus 150 ~l~~~~~s~D~v~~~--~~l~~~~~~~~~l~~~~r--~LkpgG~li~~~~~ 196 (282)
........||+|++- +.. ...+..+..+.. +|+++|.++++.+.
T Consensus 108 ~~~~~~~~fDlIFlDPPY~~---~~~~~~l~~l~~~~~L~~~~liiiE~~~ 155 (183)
T d2ifta1 108 KQPQNQPHFDVVFLDPPFHF---NLAEQAISLLCENNWLKPNALIYVETEK 155 (183)
T ss_dssp TSCCSSCCEEEEEECCCSSS---CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred cccccCCcccEEEechhHhh---hhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence 223345679999986 321 123456666654 79999999998654
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.61 E-value=3.4e-05 Score=62.23 Aligned_cols=94 Identities=11% Similarity=0.103 Sum_probs=62.5
Q ss_pred CCCeEEEeCCcccc---hhhhhc-CCCeEEEEcCCHHHHHhCCC------C---CceEEeecccc-cCC---CCCCCcee
Q 023470 97 PGSEVLDLMSSWVS---HLPQEV-SYKRVVGHGLNAQELAKNPR------L---EYFIVKDLNQD-QKL---EFDHCSFD 159 (282)
Q Consensus 97 ~~~~vLDiGcG~~~---~~~~~~-~~~~v~giD~s~~~l~~~~~------~---~~~~~~d~~~~-~~l---~~~~~s~D 159 (282)
+..+|||||+++|. .++... ..++|+.+|.+++..+.++. . ..+..++.... ..+ ....++||
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 56789999997664 334333 47899999999976654432 1 23344443211 111 11246899
Q ss_pred EEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 160 AVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 160 ~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+|+.-.- -..-...++.+.+.|+|||.+++.
T Consensus 139 ~iFiDa~---k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 139 FIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp EEEECSC---STTHHHHHHHHHHHBCTTCCEEEE
T ss_pred EEEeccc---hhhhHHHHHHHHhhcCCCcEEEEc
Confidence 9998642 235567889999999999999987
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.56 E-value=1.1e-05 Score=66.06 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=48.3
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCCC------CceEEeecccccCCCCCCCceeEEEecch
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPRL------EYFIVKDLNQDQKLEFDHCSFDAVVCAVS 166 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~~------~~~~~~d~~~~~~l~~~~~s~D~v~~~~~ 166 (282)
+.++.+|||||||+|....... .+.+|+++|+++++++..+.. ..+..+|+ .+++++....+.|+++.-
T Consensus 27 ~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~---l~~~~~~~~~~~vv~NLP 102 (245)
T d1yuba_ 27 LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDI---LQFQFPNKQRYKIVGNIP 102 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCC---TTTTCCCSSEEEEEEECC
T ss_pred CCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhccchhhhhhhh---hccccccceeeeEeeeee
Confidence 4577889999999886543332 467999999999988766543 23444554 666777777777777643
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.49 E-value=7.2e-05 Score=65.98 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=64.4
Q ss_pred CCCeEEEeCCcccchhhhhc----------------CCCeEEEEcCCHHHHHhCC----------CCCceEEeecccccC
Q 023470 97 PGSEVLDLMSSWVSHLPQEV----------------SYKRVVGHGLNAQELAKNP----------RLEYFIVKDLNQDQK 150 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~----------------~~~~v~giD~s~~~l~~~~----------~~~~~~~~d~~~~~~ 150 (282)
++.+|+|-+||+|.++.... ....++|+|+++.+...++ ........|. ..
T Consensus 162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~---l~ 238 (425)
T d2okca1 162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDS---LE 238 (425)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCT---TT
T ss_pred ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCch---hh
Confidence 46789999999988764432 0236999999997765432 1123334443 11
Q ss_pred CCCCCCceeEEEec--chhhcc--------------CCH-HHHHHHHHHcccCCcEEEEEEcCc
Q 023470 151 LEFDHCSFDAVVCA--VSVQYL--------------QQP-EKVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 151 l~~~~~s~D~v~~~--~~l~~~--------------~~~-~~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
..+...||+|+++ +..... .+. ..++..+.+.||+||++.+.+|+.
T Consensus 239 -~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~ 301 (425)
T d2okca1 239 -KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN 301 (425)
T ss_dssp -SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred -hhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechH
Confidence 2345689999999 322211 111 238999999999999999998864
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=0.00052 Score=56.91 Aligned_cols=100 Identities=15% Similarity=0.203 Sum_probs=60.3
Q ss_pred CCCCCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHH-------hCCCCCceEEeecccccCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELA-------KNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~-------~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
..++.+|||+++|-|. .++.......|+++|+++.-+. +..-. ...+.............+.||.|++-
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~~~~~~~~~~~~~~~fd~IL~D 178 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCGEQQFDRILLD 178 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc-ceeeeccccccchhcccccccEEEEe
Confidence 4578899999996543 3444456689999999975432 22211 22222211100111234679999975
Q ss_pred ------chhhccCCH----------------HHHHHHHHHcccCCcEEEEEEc
Q 023470 165 ------VSVQYLQQP----------------EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ------~~l~~~~~~----------------~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.++..-++. .++|+++.+.|||||+++-++-
T Consensus 179 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC 231 (284)
T d1sqga2 179 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 231 (284)
T ss_dssp CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred ccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence 333222222 2378999999999999998764
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.24 E-value=0.00013 Score=59.04 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=44.0
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCC----C--CCceEEeecccccCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNP----R--LEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~----~--~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
+.++.+|||||||+|....... .+.+|+++|+++.+++..+ . +..++.+|+ ..++++......|+++
T Consensus 19 ~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~---l~~~~~~~~~~~vv~N 92 (235)
T d1qama_ 19 LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDI---LQFKFPKNQSYKIFGN 92 (235)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCG---GGCCCCSSCCCEEEEE
T ss_pred CCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcccchhhhhhhh---hhccccccccceeeee
Confidence 3578999999999987544433 4679999999998875432 2 234556666 5555544433455554
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=0.00038 Score=59.55 Aligned_cols=111 Identities=20% Similarity=0.232 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhC--CCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCCC--------CCceEEeecccc-cC
Q 023470 83 FISTLTNLYRQML--RPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNPR--------LEYFIVKDLNQD-QK 150 (282)
Q Consensus 83 ~~~~~~~~~~~~~--~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~~--------~~~~~~~d~~~~-~~ 150 (282)
..+.+.+.+.+.+ .++.+|||+-||.|....... ...+|+|+|+++.+++.++. +..+..++.... ..
T Consensus 196 ~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~ 275 (358)
T d1uwva2 196 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 275 (358)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS
T ss_pred hhhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhh
Confidence 3444444444443 367889999999876543332 57899999999998865442 234555555321 12
Q ss_pred CCCCCCceeEEEec---chhhccCCHHHHHHHHHHcccCCcEEEEEEcCchhHH
Q 023470 151 LEFDHCSFDAVVCA---VSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSNRMFYE 201 (282)
Q Consensus 151 l~~~~~s~D~v~~~---~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~ 201 (282)
......++|+|+.. ..+ .+.++.+.+. +|.-.++++. |+....
T Consensus 276 ~~~~~~~~d~vilDPPR~G~------~~~~~~l~~~-~~~~ivYVSC-np~Tla 321 (358)
T d1uwva2 276 QPWAKNGFDKVLLDPARAGA------AGVMQQIIKL-EPIRIVYVSC-NPATLA 321 (358)
T ss_dssp SGGGTTCCSEEEECCCTTCC------HHHHHHHHHH-CCSEEEEEES-CHHHHH
T ss_pred hhhhhccCceEEeCCCCccH------HHHHHHHHHc-CCCEEEEEeC-CHHHHH
Confidence 23335679999885 111 2356666553 7777777874 454443
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.16 E-value=0.00064 Score=54.79 Aligned_cols=91 Identities=12% Similarity=0.028 Sum_probs=62.4
Q ss_pred CCCeEEEeCCcccc---hhhhhcCCCeEEEEcCCHHHHHhC------CCCC--ceEEeecccccCCC---CCCCceeEEE
Q 023470 97 PGSEVLDLMSSWVS---HLPQEVSYKRVVGHGLNAQELAKN------PRLE--YFIVKDLNQDQKLE---FDHCSFDAVV 162 (282)
Q Consensus 97 ~~~~vLDiGcG~~~---~~~~~~~~~~v~giD~s~~~l~~~------~~~~--~~~~~d~~~~~~l~---~~~~s~D~v~ 162 (282)
...+|+|||+|-|. .++-..+..+++-+|-+.+-++.- -+.. ......+ +.+. -..++||+|+
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~---E~~~~~~~~~~~~D~v~ 146 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRA---ETFGQRKDVRESYDIVT 146 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCH---HHHTTCTTTTTCEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehh---hhccccccccccceEEE
Confidence 46789999998653 455556899999999998644221 1222 2223333 3222 1236799999
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEEE
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSF 194 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 194 (282)
|- .+.....++.-+...+++||.+++-=
T Consensus 147 sR----Ava~l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 147 AR----AVARLSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp EE----CCSCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred Eh----hhhCHHHHHHHHhhhcccCCEEEEEC
Confidence 96 44588899999999999999988763
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.12 E-value=0.0011 Score=51.69 Aligned_cols=101 Identities=19% Similarity=0.151 Sum_probs=66.0
Q ss_pred HhhCCCCCeEEEeCCcc-cc---hhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC-----C-CCCCceeEE
Q 023470 92 RQMLRPGSEVLDLMSSW-VS---HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-----E-FDHCSFDAV 161 (282)
Q Consensus 92 ~~~~~~~~~vLDiGcG~-~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-----~-~~~~s~D~v 161 (282)
...++++.+||-+|||. |. .++......+|+++|.+++.++.+++.....+.+... .++ . .....+|++
T Consensus 20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~-~~~~~~i~~~t~g~g~D~v 98 (195)
T d1kola2 20 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLD-TPLHEQIAALLGEPEVDCA 98 (195)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSS-SCHHHHHHHHHSSSCEEEE
T ss_pred HhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCC-cCHHHHHHHHhCCCCcEEE
Confidence 34678999999999973 32 2333446779999999999888776654323322211 111 0 123458999
Q ss_pred Eecchhhc---------cCCHHHHHHHHHHcccCCcEEEEE
Q 023470 162 VCAVSVQY---------LQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 162 ~~~~~l~~---------~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+-.-.... .......++.+.++++|||++++.
T Consensus 99 id~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 99 VDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp EECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred EECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 86643211 123456899999999999999875
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.04 E-value=0.0008 Score=56.55 Aligned_cols=100 Identities=17% Similarity=0.246 Sum_probs=61.2
Q ss_pred CCCCCeEEEeCCcccc---hhhhhc-CCCeEEEEcCCHHHHHhCC------CCCceEEeecccccCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVS---HLPQEV-SYKRVVGHGLNAQELAKNP------RLEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~---~~~~~~-~~~~v~giD~s~~~l~~~~------~~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
..++.+|||++||-|. +++... ....+++.|+++.-+.... +..+........ ..++..+..||.|++-
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~-~~~~~~~~~fD~ILvD 192 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSS-LHIGELNVEFDKILLD 192 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCG-GGGGGGCCCEEEEEEE
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccc-cccccccccccEEEEc
Confidence 4578999999997553 344333 5679999999986553221 112222222211 4445556789999874
Q ss_pred ------chhhccCC------H----------HHHHHHHHHcccCCcEEEEEEc
Q 023470 165 ------VSVQYLQQ------P----------EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 165 ------~~l~~~~~------~----------~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.++..-++ . .+++.++.+.|||||+++-++-
T Consensus 193 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTC 245 (313)
T d1ixka_ 193 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 245 (313)
T ss_dssp CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred cccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeec
Confidence 22221111 1 2278999999999999988754
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.00033 Score=63.31 Aligned_cols=99 Identities=12% Similarity=0.050 Sum_probs=61.6
Q ss_pred CCCeEEEeCCcccchhhhhc---------------------CCCeEEEEcCCHHHHHhCC------CC-C------ceEE
Q 023470 97 PGSEVLDLMSSWVSHLPQEV---------------------SYKRVVGHGLNAQELAKNP------RL-E------YFIV 142 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~~~~~~---------------------~~~~v~giD~s~~~l~~~~------~~-~------~~~~ 142 (282)
++.+|+|-+||+|.++.... ....++|+|+++.+...++ .. . ....
T Consensus 164 ~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~ 243 (524)
T d2ar0a1 164 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 243 (524)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhh
Confidence 46789999999987764321 0136899999997765443 11 0 1111
Q ss_pred eecccccCCCCCCCceeEEEec--chhhcc-----------CCHH-HHHHHHHHcccCCcEEEEEEcCc
Q 023470 143 KDLNQDQKLEFDHCSFDAVVCA--VSVQYL-----------QQPE-KVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 143 ~d~~~~~~l~~~~~s~D~v~~~--~~l~~~-----------~~~~-~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.+... .-......||+|+++ +....- .+.+ .++..+.+.|||||++.+.+|+.
T Consensus 244 ~~~l~--~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~ 310 (524)
T d2ar0a1 244 GNTLG--SDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 310 (524)
T ss_dssp SCTTS--HHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred hhhhh--hcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehH
Confidence 11100 001234579999999 332221 1222 38999999999999999998865
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.46 E-value=0.0012 Score=50.33 Aligned_cols=94 Identities=10% Similarity=0.057 Sum_probs=61.0
Q ss_pred hCCCCCeEEEeCCcc-cc---hhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-CCCCCceeEEEecc
Q 023470 94 MLRPGSEVLDLMSSW-VS---HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-EFDHCSFDAVVCAV 165 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~~~~~s~D~v~~~~ 165 (282)
.++++.+||=+|||. |. .+++..+...|+.+|.+++-++.+++.....+.+.... +.+ .+.++.+|+|+-+-
T Consensus 25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~ 104 (174)
T d1f8fa2 25 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALEST 104 (174)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred CCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcC
Confidence 366889999999973 22 33444467788999999987776655432222332211 100 12345799988653
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. -...++.+.++++|+|++++.
T Consensus 105 G------~~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 105 G------SPEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp C------CHHHHHHHHHTEEEEEEEEEC
T ss_pred C------cHHHHHHHHhcccCceEEEEE
Confidence 2 256788999999999998864
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.35 E-value=0.0031 Score=48.20 Aligned_cols=92 Identities=12% Similarity=0.117 Sum_probs=58.8
Q ss_pred CCCCCeEEEeCCc-ccc---hhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---------cCCCCCCCceeEE
Q 023470 95 LRPGSEVLDLMSS-WVS---HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---------QKLEFDHCSFDAV 161 (282)
Q Consensus 95 ~~~~~~vLDiGcG-~~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---------~~l~~~~~s~D~v 161 (282)
++++.+||-+||| .|. .++...+..+|+++|.+++.++.+++...-.+.+.... .++. ....+|+|
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~-~~~g~Dvv 104 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDIT-HGRGADFI 104 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHT-TTSCEEEE
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhh-CCCCceEE
Confidence 5678999999997 333 33443344589999999998877665532223332210 0111 12459998
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+-+-. . ...++.+.++|+|||++++.
T Consensus 105 id~vG-----~-~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 105 LEATG-----D-SRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp EECSS-----C-TTHHHHHHHHEEEEEEEEEC
T ss_pred eecCC-----c-hhHHHHHHHHhcCCCEEEEE
Confidence 86542 1 34678899999999998754
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.33 E-value=0.012 Score=44.15 Aligned_cols=94 Identities=13% Similarity=0.084 Sum_probs=59.2
Q ss_pred hhCCCCCeEEEeCCc-ccch---hhhhcCCCeEEEEcCCHHHHHhCCCCCc--eEEeecccc------cCCC-CCCCcee
Q 023470 93 QMLRPGSEVLDLMSS-WVSH---LPQEVSYKRVVGHGLNAQELAKNPRLEY--FIVKDLNQD------QKLE-FDHCSFD 159 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG-~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~--~~~~d~~~~------~~l~-~~~~s~D 159 (282)
..++++.+||-+||| .|.. +++. .+.+|+++|.+++-++.+++... ....+.... +.+. ...+.+|
T Consensus 22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~-~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D 100 (170)
T d1e3ja2 22 AGVQLGTTVLVIGAGPIGLVSVLAAKA-YGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPN 100 (170)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred hCCCCCCEEEEEcccccchhhHhhHhh-hcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCc
Confidence 356788999999997 3332 2222 56799999999988876665431 122221100 0000 0124578
Q ss_pred EEEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 160 AVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 160 ~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+|+-+-. -...+..+.++|+|||++++.
T Consensus 101 ~vid~~g------~~~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 101 VTIDCSG------NEKCITIGINITRTGGTLMLV 128 (170)
T ss_dssp EEEECSC------CHHHHHHHHHHSCTTCEEEEC
T ss_pred eeeecCC------ChHHHHHHHHHHhcCCceEEE
Confidence 8876532 256788999999999998865
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.29 E-value=0.0012 Score=56.72 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=62.7
Q ss_pred CCCeEEEeCCcccch---hhhhcCCCeEEEEcCCHHHHHhCCCCC------c-----------------eEEeecccccC
Q 023470 97 PGSEVLDLMSSWVSH---LPQEVSYKRVVGHGLNAQELAKNPRLE------Y-----------------FIVKDLNQDQK 150 (282)
Q Consensus 97 ~~~~vLDiGcG~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~------~-----------------~~~~d~~~~~~ 150 (282)
++.+|||..||+|.+ .+.+.+..+|++.|+|+.+++..+.+. + ....|.+ ..
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~--~~ 122 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDAN--RL 122 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHH--HH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhh--hh
Confidence 567899999988754 334446779999999999886544221 0 0111110 01
Q ss_pred CCCCCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 151 LEFDHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 151 l~~~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+......||+|..-= ...+..+++.+.+.++.||.|+++..+
T Consensus 123 ~~~~~~~fDvIDiDP----fGs~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 123 MAERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp HHHSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hHhhcCcCCcccCCC----CCCcHHHHHHHHHHhccCCEEEEEecC
Confidence 111245699887752 236677999999999999999998544
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.17 E-value=0.0087 Score=45.05 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=60.9
Q ss_pred hhCCCCCeEEEeCCcc-cc---hhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC-------C-CCCCceeE
Q 023470 93 QMLRPGSEVLDLMSSW-VS---HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-------E-FDHCSFDA 160 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG~-~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-------~-~~~~s~D~ 160 (282)
..+.++.+||=+|||. |. .++...+..+|+++|.+++-++.+++..--.+.+... ++. . .....+|+
T Consensus 22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~-~~~~~~~~~~~~~~g~g~Dv 100 (171)
T d1pl8a2 22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISK-ESPQEIARKVEGQLGCKPEV 100 (171)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSS-CCHHHHHHHHHHHHTSCCSE
T ss_pred hCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccc-cccccccccccccCCCCceE
Confidence 3567889999999973 22 3333345568999999999888776553212222211 110 0 01245888
Q ss_pred EEecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 161 VVCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 161 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
|+-+-. -+..++.+.+.+++||++++.
T Consensus 101 vid~~G------~~~~~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 101 TIECTG------AEASIQAGIYATRSGGTLVLV 127 (171)
T ss_dssp EEECSC------CHHHHHHHHHHSCTTCEEEEC
T ss_pred EEeccC------CchhHHHHHHHhcCCCEEEEE
Confidence 887543 256789999999999998875
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.16 E-value=0.00085 Score=50.90 Aligned_cols=97 Identities=13% Similarity=-0.043 Sum_probs=58.2
Q ss_pred hhCCCCCeEEEeCCc-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccC-CCCCCCceeEEEecchhh
Q 023470 93 QMLRPGSEVLDLMSS-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQK-LEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~-l~~~~~s~D~v~~~~~l~ 168 (282)
..++++.+||-+||| .|....+. ..+++|+++|.|++.++.+++..--.+.+...+.+ .....+.+|+|+.+-.-.
T Consensus 23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~ 102 (168)
T d1piwa2 23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL 102 (168)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS
T ss_pred hCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCC
Confidence 467789999999997 33322221 24679999999988777665443111222211111 111235699888764322
Q ss_pred ccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 169 YLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+- ..+....++|+|||++++.
T Consensus 103 ~~----~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 103 TD----IDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp TT----CCTTTGGGGEEEEEEEEEC
T ss_pred cc----chHHHHHHHhhccceEEEe
Confidence 21 1245688999999998764
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.16 E-value=0.0029 Score=48.20 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=59.9
Q ss_pred hhCCCCCeEEEeCCcc-cc---hhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc------cCCCCCCCceeEEE
Q 023470 93 QMLRPGSEVLDLMSSW-VS---HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD------QKLEFDHCSFDAVV 162 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG~-~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~------~~l~~~~~s~D~v~ 162 (282)
..++++.+||=+|||. |. .+++..+..+|+++|.+++-++.+++.....+.+.... .++. ...-+|+|+
T Consensus 23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t-~g~G~D~vi 101 (174)
T d1jqba2 23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLT-NGKGVDRVI 101 (174)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHT-TTSCEEEEE
T ss_pred hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHh-hccCcceEE
Confidence 3577889999999972 32 33443455689999999987776654432222222111 0111 224499988
Q ss_pred ecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 163 CAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 163 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-+-.- ...++...++|+|+|.+++.
T Consensus 102 d~~g~------~~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 102 MAGGG------SETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp ECSSC------TTHHHHHHHHEEEEEEEEEC
T ss_pred EccCC------HHHHHHHHHHHhcCCEEEEE
Confidence 76431 34678889999999999874
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.05 E-value=0.0075 Score=45.58 Aligned_cols=92 Identities=13% Similarity=0.072 Sum_probs=59.8
Q ss_pred hCCCCCeEEEeCC-c-ccchhhh--hcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC------CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMS-S-WVSHLPQ--EVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL------EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGc-G-~~~~~~~--~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l------~~~~~s~D~v~~ 163 (282)
.++++.+||-.|+ | .|....+ ...+.+|++++.|++.++.+++..--.+.+... .++ ....+.+|+|+.
T Consensus 25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~-~~~~~~i~~~t~~~g~d~v~d 103 (174)
T d1yb5a2 25 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHRE-VNYIDKIKKYVGEKGIDIIIE 103 (174)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTS-TTHHHHHHHHHCTTCEEEEEE
T ss_pred CCCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCccccccccc-ccHHHHhhhhhccCCceEEee
Confidence 3568899999997 5 3332221 225679999999988776665443223334321 111 113456999998
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+-. ...+....++|+|||+++..
T Consensus 104 ~~g-------~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 104 MLA-------NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp SCH-------HHHHHHHHHHEEEEEEEEEC
T ss_pred ccc-------HHHHHHHHhccCCCCEEEEE
Confidence 654 34688899999999998864
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.92 E-value=0.0066 Score=45.45 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=57.7
Q ss_pred hhCCCCCeEEEeCCcc-cc---hhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-CCCCCceeEEEec
Q 023470 93 QMLRPGSEVLDLMSSW-VS---HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-EFDHCSFDAVVCA 164 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG~-~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~~~~~s~D~v~~~ 164 (282)
..++++.+||=+|||. |. .+++. .+.+|+++|.+++.++.+++..--...+.... +.+ ....+.+|+|++.
T Consensus 23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~-~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~ 101 (166)
T d1llua2 23 TNARPGQWVAISGIGGLGHVAVQYARA-MGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTA 101 (166)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECC
T ss_pred hCCCCCCEEEEeeccccHHHHHHHHHH-cCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccc
Confidence 3567889999999973 32 23333 45899999999988877665432222232211 000 1112345555554
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.. ...+..+.+.|+|||++++.
T Consensus 102 ~~-------~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 102 VS-------NSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp SC-------HHHHHHHHTTEEEEEEEEEC
T ss_pred cc-------chHHHHHHHHhcCCcEEEEE
Confidence 43 45678899999999998764
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=95.80 E-value=0.0078 Score=48.62 Aligned_cols=51 Identities=8% Similarity=0.051 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHh
Q 023470 81 GGFISTLTNLYRQMLRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAK 133 (282)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~ 133 (282)
....+.+.+.+ .+.++..|||||||.|....... .+.+|+++|+++.+++.
T Consensus 7 ~~~~~~Iv~~~--~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~ 58 (252)
T d1qyra_ 7 QFVIDSIVSAI--NPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAAR 58 (252)
T ss_dssp HHHHHHHHHHH--CCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHH
T ss_pred HHHHHHHHHhc--CCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHH
Confidence 34545554443 24467889999999887544332 56899999999998764
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.021 Score=47.05 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=53.8
Q ss_pred CCCCCeEEEeCCcccc---hhhhhc-CCCeEEEEcCCHHHHHhCC--------CCCceEEeecccccCCCCC---CCcee
Q 023470 95 LRPGSEVLDLMSSWVS---HLPQEV-SYKRVVGHGLNAQELAKNP--------RLEYFIVKDLNQDQKLEFD---HCSFD 159 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~---~~~~~~-~~~~v~giD~s~~~l~~~~--------~~~~~~~~d~~~~~~l~~~---~~s~D 159 (282)
..++.+|||++||-|. +++... ....|+++|+++.-++..+ .+..+...|. ..+... .+.||
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~---~~~~~~~~~~~~fD 168 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDF---LAVSPSDPRYHEVH 168 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCG---GGSCTTCGGGTTEE
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhh---hhhcccccccceee
Confidence 4578899999997543 334333 5679999999986543221 1222333343 222211 25699
Q ss_pred EEEec------chhhccCC-----------H-------HHHHHHHHHcccCCcEEEEEEc
Q 023470 160 AVVCA------VSVQYLQQ-----------P-------EKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 160 ~v~~~------~~l~~~~~-----------~-------~~~l~~~~r~LkpgG~li~~~~ 195 (282)
.|+.- .++..-++ . ..++..+. .|||||.++-++-
T Consensus 169 ~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTC 227 (293)
T d2b9ea1 169 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTC 227 (293)
T ss_dssp EEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEES
T ss_pred EEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeec
Confidence 99976 22221111 1 11455555 4799999887753
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.67 E-value=0.012 Score=43.90 Aligned_cols=95 Identities=20% Similarity=0.150 Sum_probs=59.0
Q ss_pred HhhCCCCCeEEEeCCcc-cchhhh--hcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCC-CCCCCceeEEEec
Q 023470 92 RQMLRPGSEVLDLMSSW-VSHLPQ--EVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKL-EFDHCSFDAVVCA 164 (282)
Q Consensus 92 ~~~~~~~~~vLDiGcG~-~~~~~~--~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l-~~~~~s~D~v~~~ 164 (282)
...+.++.+||=.|||. |..... ...+.+|+++|.+++-++.++....-.+.+.... ..+ ....+.+|+|++.
T Consensus 22 ~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 101 (168)
T d1rjwa2 22 VTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTA 101 (168)
T ss_dssp HHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESS
T ss_pred HhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeec
Confidence 34577899999999973 322211 1256799999999988877665542223332110 001 1123445555543
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.. ...+..+.+.|+|||++++.
T Consensus 102 ~~-------~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 102 VS-------KPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp CC-------HHHHHHHHHHEEEEEEEEEC
T ss_pred CC-------HHHHHHHHHHhccCCceEec
Confidence 32 56789999999999998874
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=95.66 E-value=0.011 Score=50.12 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=37.5
Q ss_pred CCCCCCCceeEEEecchhhccCC---------------------------------HHHHHHHHHHcccCCcEEEEEEcC
Q 023470 150 KLEFDHCSFDAVVCAVSVQYLQQ---------------------------------PEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 150 ~l~~~~~s~D~v~~~~~l~~~~~---------------------------------~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
.--+|++|.++++|++++||+.. ...+|+.-.+-|+|||++++++.+
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g 211 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 34478999999999999999842 223778888889999999998644
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.52 E-value=0.011 Score=44.46 Aligned_cols=94 Identities=19% Similarity=0.134 Sum_probs=61.0
Q ss_pred hCCCCCeEEEeCCcc-cc---hhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCCC-CCCCceeEEEecc
Q 023470 94 MLRPGSEVLDLMSSW-VS---HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKLE-FDHCSFDAVVCAV 165 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l~-~~~~s~D~v~~~~ 165 (282)
.++++.+||=+|||. |. .++.......|+++|.+++-++.+++...-.+.+...+ .... .....+|+|+-+-
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~ 108 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFV 108 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEec
Confidence 367889999999973 22 33444477899999999987766655432223333211 0011 1234599888765
Q ss_pred hhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 166 SVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 166 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
. -...++...+.|++||++++.
T Consensus 109 g------~~~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 109 G------SQATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp C------CHHHHHHGGGGEEEEEEEEEC
T ss_pred C------cchHHHHHHHHHhCCCEEEEE
Confidence 4 245688999999999999864
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.22 E-value=0.032 Score=42.06 Aligned_cols=94 Identities=14% Similarity=0.079 Sum_probs=60.8
Q ss_pred hCCCCCeEEEeCCcc-cc---hhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC------CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSW-VS---HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL------EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l------~~~~~s~D~v~~ 163 (282)
.++++.+||=+|||. |. .+++......|+.+|++++-++.+++..--.+.+....... ....+-+|+|+-
T Consensus 25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie 104 (174)
T d1e3ia2 25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLD 104 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEE
Confidence 467889999999973 32 33444466789999999987777665542223322110100 012345888876
Q ss_pred cchhhccCCHHHHHHHHHHcccCC-cEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPG-GVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~Lkpg-G~li~~ 193 (282)
+-. -...+.+..+.|+|| |++++.
T Consensus 105 ~~G------~~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 105 CAG------TAQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp SSC------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred ecc------cchHHHHHHHHhhcCCeEEEec
Confidence 542 266789999999996 998875
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.08 E-value=0.018 Score=47.12 Aligned_cols=65 Identities=25% Similarity=0.259 Sum_probs=41.7
Q ss_pred CCCCCeEEEeCCcccchhhhhc-CCCeEEEEcCCHHHHHhCC----C-----CCceEEeecccccCCCCCCCceeEEEec
Q 023470 95 LRPGSEVLDLMSSWVSHLPQEV-SYKRVVGHGLNAQELAKNP----R-----LEYFIVKDLNQDQKLEFDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGcG~~~~~~~~~-~~~~v~giD~s~~~l~~~~----~-----~~~~~~~d~~~~~~l~~~~~s~D~v~~~ 164 (282)
+.++..|||||+|.|....... .+.+|+++++++.+++..+ . +...+.+|+ ...+++ .++.|+++
T Consensus 19 ~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~---l~~~~~--~~~~vV~N 93 (278)
T d1zq9a1 19 LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV---LKTDLP--FFDTCVAN 93 (278)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCT---TTSCCC--CCSEEEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHH---hhhhhh--hhhhhhcc
Confidence 4468899999999887544332 4579999999998775322 1 224455555 344433 34567766
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.87 E-value=0.026 Score=42.72 Aligned_cols=95 Identities=13% Similarity=0.079 Sum_probs=56.1
Q ss_pred hCCCCCeEEEeCCc-ccc---hhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC-----C-CCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSS-WVS---HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-----E-FDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-----~-~~~~s~D~v~~ 163 (282)
.++++..||=+||| .|. ..++.....+|+++|.+++-++.+++..--.+.+....... . .....+|+++-
T Consensus 26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~ 105 (176)
T d1d1ta2 26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFE 105 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEE
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEE
Confidence 46788999999997 332 23334466899999999998887775542222222110110 0 12345887776
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
... ........+..+++++|++++.
T Consensus 106 ~~g-----~~~~~~~a~~~~~~~~G~~v~v 130 (176)
T d1d1ta2 106 VIG-----HLETMIDALASCHMNYGTSVVV 130 (176)
T ss_dssp CSC-----CHHHHHHHHTTSCTTTCEEEEC
T ss_pred eCC-----chHHHHHHHHHhhcCCeEEEEE
Confidence 543 3333444455555666888765
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.69 E-value=0.022 Score=42.98 Aligned_cols=94 Identities=16% Similarity=0.103 Sum_probs=56.6
Q ss_pred hCCCCCeEEEeCCc-ccc---hhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccC------CCCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSS-WVS---HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQK------LEFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~------l~~~~~s~D~v~~ 163 (282)
.++++.+||=+||| .|. .+++.....+|+++|.+++-++.+++..--.+.+...... .....+-+|+|+-
T Consensus 24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid 103 (174)
T d1p0fa2 24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVE 103 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEE
Confidence 46789999999997 232 2334446789999999998887776654222333211010 0112345788776
Q ss_pred cchhhccCCHHHHHHHHHHcc-cCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVL-KPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~L-kpgG~li~~ 193 (282)
.-. . ...+.+....+ +++|.+++.
T Consensus 104 ~~g-----~-~~~~~~~~~~~~~~~G~~v~v 128 (174)
T d1p0fa2 104 CAG-----R-IETMMNALQSTYCGSGVTVVL 128 (174)
T ss_dssp CSC-----C-HHHHHHHHHTBCTTTCEEEEC
T ss_pred cCC-----C-chHHHHHHHHHHHhcCceEEE
Confidence 533 2 44556666655 556887764
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.52 E-value=0.037 Score=41.22 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=59.7
Q ss_pred hhCCCCCeEEEeCC-c-ccch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC-----C-CCCCceeEE
Q 023470 93 QMLRPGSEVLDLMS-S-WVSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-----E-FDHCSFDAV 161 (282)
Q Consensus 93 ~~~~~~~~vLDiGc-G-~~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-----~-~~~~s~D~v 161 (282)
..+.++.+||=+|| | .|.. ++...+...|+++|.+++-++.+++..--.+.+... .+. . ...+.+|+|
T Consensus 23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~-~~~~~~~~~~~~~~~~d~v 101 (170)
T d1jvba2 23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASM-QDPLAEIRRITESKGVDAV 101 (170)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTT-SCHHHHHHHHTTTSCEEEE
T ss_pred hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCC-cCHHHHHHHHhhcccchhh
Confidence 35678899999997 4 3332 333346689999999998776655432112222211 111 0 123569999
Q ss_pred EecchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 162 VCAVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 162 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+.+.. -...++.+.+.|+|||++++.
T Consensus 102 id~~g------~~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 102 IDLNN------SEKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp EESCC------CHHHHTTGGGGEEEEEEEEEC
T ss_pred hcccc------cchHHHhhhhhcccCCEEEEe
Confidence 88643 255678889999999998765
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=93.99 E-value=0.026 Score=42.18 Aligned_cols=94 Identities=16% Similarity=0.101 Sum_probs=58.1
Q ss_pred hhCCCCCeEEEeCCcc-cch---hhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCCCCCCceeEEEecchhh
Q 023470 93 QMLRPGSEVLDLMSSW-VSH---LPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 93 ~~~~~~~~vLDiGcG~-~~~---~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~ 168 (282)
..++++.+||=+|||. |.. +++. .+.+++++|.+++-++.+++...-.+.+...........+.+|+++-.-.-
T Consensus 26 ~~~~~G~~VlI~GaG~vG~~a~qlak~-~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~- 103 (168)
T d1uufa2 26 WQAGPGKKVGVVGIGGLGHMGIKLAHA-MGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA- 103 (168)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS-
T ss_pred hCCCCCCEEEEeccchHHHHHHHHhhc-ccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeec-
Confidence 3577899999999973 332 2222 567888999988766655543322233332211111123569998876432
Q ss_pred ccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 169 YLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
...+....+.|+|||++++.
T Consensus 104 -----~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 104 -----PHNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp -----CCCHHHHHTTEEEEEEEEEC
T ss_pred -----chhHHHHHHHHhcCCEEEEe
Confidence 22457788999999998875
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.54 E-value=0.06 Score=39.99 Aligned_cols=84 Identities=13% Similarity=0.159 Sum_probs=51.3
Q ss_pred eEEEeCCc-ccchhhhhc----CCCeEEEEcCCHHHHHhCCCCCce--EEeecccccCCCCCCCceeEEEecchhhccCC
Q 023470 100 EVLDLMSS-WVSHLPQEV----SYKRVVGHGLNAQELAKNPRLEYF--IVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQ 172 (282)
Q Consensus 100 ~vLDiGcG-~~~~~~~~~----~~~~v~giD~s~~~l~~~~~~~~~--~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~ 172 (282)
+|+=|||| .|..++... ...+|+|+|.+++.++.+++.... ...+. . ...+...|+|+.+--.. .
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~dlIila~p~~---~ 74 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSI---A--KVEDFSPDFVMLSSPVR---T 74 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCG---G--GGGGTCCSEEEECSCHH---H
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhh---h--hhhccccccccccCCch---h
Confidence 47779998 344433322 346899999999988766544321 12221 1 11234578888764322 2
Q ss_pred HHHHHHHHHHcccCCcEEE
Q 023470 173 PEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 173 ~~~~l~~~~r~LkpgG~li 191 (282)
...++.++...++++-.++
T Consensus 75 ~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 75 FREIAKKLSYILSEDATVT 93 (171)
T ss_dssp HHHHHHHHHHHSCTTCEEE
T ss_pred hhhhhhhhhcccccccccc
Confidence 3568889999998875544
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.10 E-value=0.071 Score=40.01 Aligned_cols=91 Identities=22% Similarity=0.211 Sum_probs=57.1
Q ss_pred CCCCCeEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC-----C-CCCCceeEEEec
Q 023470 95 LRPGSEVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL-----E-FDHCSFDAVVCA 164 (282)
Q Consensus 95 ~~~~~~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l-----~-~~~~s~D~v~~~ 164 (282)
++++.+||=.|. | .|....+. ..++++++++-+++..+.+++...-.+.+... .++ . .....+|+|+.+
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~-~~~~~~v~~~t~~~g~d~v~d~ 101 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRS-VDFADEILELTDGYGVDVVLNS 101 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTC-STHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCc-cCHHHHHHHHhCCCCEEEEEec
Confidence 567889998774 4 34433222 24679999888887666555443222333321 111 0 123569999987
Q ss_pred chhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 165 VSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 165 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
-. ...++.+.++|+++|+++..
T Consensus 102 ~g-------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 102 LA-------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp CC-------THHHHHHHHTEEEEEEEEEC
T ss_pred cc-------chHHHHHHHHhcCCCEEEEE
Confidence 65 34678889999999998864
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=92.98 E-value=0.035 Score=41.71 Aligned_cols=92 Identities=13% Similarity=0.085 Sum_probs=58.6
Q ss_pred hCCCCCeEEEeCCc--ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCCC------CCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSS--WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKLE------FDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG--~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l~------~~~~s~D~v~~ 163 (282)
.++++.+||=.|+| .|....+. ..+++|++++.|++.++.+++...-.+.+... +++. -....+|+|+.
T Consensus 25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~-~d~~~~v~~~t~g~g~d~v~d 103 (179)
T d1qora2 25 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYRE-EDLVERLKEITGGKKVRVVYD 103 (179)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTT-SCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCC-CCHHHHHHHHhCCCCeEEEEe
Confidence 35688999999874 34333222 25689999999998776655443223334322 1110 12456899887
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
.-.- ..+......|+|+|++++.
T Consensus 104 ~~g~-------~~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 104 SVGR-------DTWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp CSCG-------GGHHHHHHTEEEEEEEEEC
T ss_pred CccH-------HHHHHHHHHHhcCCeeeec
Confidence 6542 3457899999999997764
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=92.89 E-value=0.12 Score=38.82 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=59.2
Q ss_pred hCCCCCeEEEeCCc--ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC------CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSS--WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL------EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG--~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l------~~~~~s~D~v~~ 163 (282)
.++++.+||=.|+| .|....+. ..+++|++++-+++.++..+....-.+.+... ++. .....-+|+|+-
T Consensus 26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~-~~~~~~~~~~~~~~Gvd~v~D 104 (182)
T d1v3va2 26 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKT-VNSLEEALKKASPDGYDCYFD 104 (182)
T ss_dssp CCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTS-CSCHHHHHHHHCTTCEEEEEE
T ss_pred CCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhccccc-ccHHHHHHHHhhcCCCceeEE
Confidence 35688999988883 33332222 25789999999988776655443222233211 111 112355999988
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+-. .+.+++..++|+|||.+++.
T Consensus 105 ~vG-------~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 105 NVG-------GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp SSC-------HHHHHHHGGGEEEEEEEEEC
T ss_pred ecC-------chhhhhhhhhccCCCeEEee
Confidence 654 45779999999999998864
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=92.44 E-value=0.11 Score=38.22 Aligned_cols=83 Identities=11% Similarity=0.058 Sum_probs=51.3
Q ss_pred CeEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCCC--ceEEeecccccCCCCCCCceeEEEecchhhccCCH
Q 023470 99 SEVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRLE--YFIVKDLNQDQKLEFDHCSFDAVVCAVSVQYLQQP 173 (282)
Q Consensus 99 ~~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~--~~~~~d~~~~~~l~~~~~s~D~v~~~~~l~~~~~~ 173 (282)
++|.=||+| .|..++... .+.+|++.|.+++.++.+++.. .....+. +.+ ...|+|+.+--.. ..
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~---~~~----~~~DiIilavp~~---~~ 70 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDL---SLL----QTAKIIFLCTPIQ---LI 70 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCG---GGG----TTCSEEEECSCHH---HH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeec---ccc----cccccccccCcHh---hh
Confidence 467778998 454443332 6789999999998877654432 1111111 112 3578888643222 33
Q ss_pred HHHHHHHHHcccCCcEEE
Q 023470 174 EKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 174 ~~~l~~~~r~LkpgG~li 191 (282)
+.+++++...|+++-.++
T Consensus 71 ~~vl~~l~~~l~~~~iv~ 88 (165)
T d2f1ka2 71 LPTLEKLIPHLSPTAIVT 88 (165)
T ss_dssp HHHHHHHGGGSCTTCEEE
T ss_pred hhhhhhhhhhccccccee
Confidence 668899988888877554
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=91.70 E-value=0.042 Score=41.16 Aligned_cols=92 Identities=20% Similarity=0.169 Sum_probs=54.6
Q ss_pred hhCCCCCeEEEeCC-c-ccchhhh--hcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc-cCCCCCCCceeEEEecchh
Q 023470 93 QMLRPGSEVLDLMS-S-WVSHLPQ--EVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD-QKLEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 93 ~~~~~~~~vLDiGc-G-~~~~~~~--~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~-~~l~~~~~s~D~v~~~~~l 167 (282)
..++++.+||=.|. | .|....+ ...+.+|++++.+++.++.+++..--.+.+.... .... ..+.+|+|+-+..
T Consensus 23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~-~~~g~D~v~d~~G- 100 (171)
T d1iz0a2 23 AQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAK-AWGGLDLVLEVRG- 100 (171)
T ss_dssp TTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHH-HTTSEEEEEECSC-
T ss_pred hCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhh-ccccccccccccc-
Confidence 35678999999885 5 3333221 2256799999998865554443321122233210 1111 1245999987432
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
..+....+.|+|||++++.
T Consensus 101 -------~~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 101 -------KEVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp -------TTHHHHHTTEEEEEEEEEC
T ss_pred -------hhHHHHHHHHhcCCcEEEE
Confidence 1357788999999998753
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.30 E-value=0.043 Score=41.51 Aligned_cols=92 Identities=20% Similarity=0.041 Sum_probs=55.9
Q ss_pred CCCCCeEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccc--cC-CCCCCCceeEEEecchh
Q 023470 95 LRPGSEVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD--QK-LEFDHCSFDAVVCAVSV 167 (282)
Q Consensus 95 ~~~~~~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~--~~-l~~~~~s~D~v~~~~~l 167 (282)
.+++.+||=-|+ | .|...-+. ..+.+|+++.-|++..+.++....-.+.+.... +. .....+.+|+|+-+-.
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg- 107 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG- 107 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECST-
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCC-
Confidence 445788999997 2 34332221 267899999888766655544332122222111 11 1234567999888654
Q ss_pred hccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 168 QYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 168 ~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
...+....++|+|||+++..
T Consensus 108 ------g~~~~~~l~~l~~~Griv~~ 127 (176)
T d1xa0a2 108 ------GRTLATVLSRMRYGGAVAVS 127 (176)
T ss_dssp ------TTTHHHHHHTEEEEEEEEEC
T ss_pred ------chhHHHHHHHhCCCceEEEe
Confidence 23578999999999999865
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=90.81 E-value=0.11 Score=42.37 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=37.1
Q ss_pred HHHHHHhhCCCCCeEEEeCCcccchhhh-hcCCCeEEEEcCCHHHHHhCCC
Q 023470 87 LTNLYRQMLRPGSEVLDLMSSWVSHLPQ-EVSYKRVVGHGLNAQELAKNPR 136 (282)
Q Consensus 87 ~~~~~~~~~~~~~~vLDiGcG~~~~~~~-~~~~~~v~giD~s~~~l~~~~~ 136 (282)
+..++.....++..|||.=||.|..+.+ ..-+.+.+|+|++++.++.+..
T Consensus 240 ~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~ 290 (320)
T d1booa_ 240 PEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAF 290 (320)
T ss_dssp HHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHG
T ss_pred HHHhhhhcccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHH
Confidence 3344455567899999999988865444 3467899999999998876543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.72 E-value=0.27 Score=36.32 Aligned_cols=94 Identities=15% Similarity=0.099 Sum_probs=59.3
Q ss_pred hCCCCCeEEEeCCc-ccc---hhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccc-cCC-----CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSS-WVS---HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD-QKL-----EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~-~~l-----~~~~~s~D~v~~ 163 (282)
.++++.+||=.||| .|. .++.......|+++|.+++-++.+++..--.+.+.... ... ....+.+|+|+-
T Consensus 25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid 104 (176)
T d2fzwa2 25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFE 104 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeee
Confidence 47789999999996 332 23344467899999999887766654431122222110 000 012345899887
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
+-. ....++.+..++++||.+++.
T Consensus 105 ~~G------~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 105 CIG------NVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp CSC------CHHHHHHHHHTBCTTTCEEEE
T ss_pred cCC------CHHHHHHHHHhhcCCceeEEE
Confidence 643 256788899999999887654
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=90.68 E-value=0.29 Score=36.21 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=57.2
Q ss_pred hCCCCCeEEEeCCc-ccc---hhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC------CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSS-WVS---HLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL------EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG-~~~---~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l------~~~~~s~D~v~~ 163 (282)
.++++.+||=+||| .|. .++......+|+++|.+++-++.+++.......+.....+. ....+.+|+|+-
T Consensus 25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid 104 (176)
T d2jhfa2 25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFE 104 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEe
Confidence 47789999999996 222 33444477899999999987766655432222222110110 112356899888
Q ss_pred cchhhccCCHHHHHHHHHHcccCC-cEEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPG-GVFIVS 193 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~Lkpg-G~li~~ 193 (282)
+... ...++.+...+++| |.+++.
T Consensus 105 ~~G~------~~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 105 VIGR------LDTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp CSCC------HHHHHHHHHHBCTTTCEEEEC
T ss_pred cCCc------hhHHHHHHHHHhcCCcceEEe
Confidence 7542 45567777888886 455443
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.84 E-value=0.076 Score=42.46 Aligned_cols=43 Identities=23% Similarity=0.423 Sum_probs=31.8
Q ss_pred CCCCceeEEEec--chh---------hccCCHHHHHHHHHHcccCCcEEEEEEc
Q 023470 153 FDHCSFDAVVCA--VSV---------QYLQQPEKVFAEVFRVLKPGGVFIVSFS 195 (282)
Q Consensus 153 ~~~~s~D~v~~~--~~l---------~~~~~~~~~l~~~~r~LkpgG~li~~~~ 195 (282)
++++|+|+|+.. +.+ .++......+.+++|+|||||.+++...
T Consensus 19 l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~ 72 (279)
T d1eg2a_ 19 LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 72 (279)
T ss_dssp SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence 568999999998 221 2222345688999999999999988643
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=86.62 E-value=0.51 Score=36.72 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=35.9
Q ss_pred HHHHHHhhCCCCCeEEEeCCcccchhhh-hcCCCeEEEEcCCHHHHHhCC
Q 023470 87 LTNLYRQMLRPGSEVLDLMSSWVSHLPQ-EVSYKRVVGHGLNAQELAKNP 135 (282)
Q Consensus 87 ~~~~~~~~~~~~~~vLDiGcG~~~~~~~-~~~~~~v~giD~s~~~l~~~~ 135 (282)
+..++...-.++..|||.=||.|..+.+ ..-+.+.+|+|++++.++.++
T Consensus 202 ~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~ 251 (256)
T d1g60a_ 202 IERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQAN 251 (256)
T ss_dssp HHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 3444445567899999999988765433 346789999999998776554
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=86.40 E-value=0.77 Score=34.13 Aligned_cols=89 Identities=15% Similarity=0.049 Sum_probs=54.0
Q ss_pred CCeEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccc-cCCCCCCCceeEEEecchhhccCC
Q 023470 98 GSEVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD-QKLEFDHCSFDAVVCAVSVQYLQQ 172 (282)
Q Consensus 98 ~~~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~-~~l~~~~~s~D~v~~~~~l~~~~~ 172 (282)
+..||=.|. | .|....+. .-+.+|+++.-+++..+.++...--.+.+.... ..-.+....+|.|+-+-.
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vg------ 105 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVG------ 105 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSC------
T ss_pred CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEcc------
Confidence 457776666 3 44433222 257899999999877665554432223333211 122344566888764322
Q ss_pred HHHHHHHHHHcccCCcEEEEE
Q 023470 173 PEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 173 ~~~~l~~~~r~LkpgG~li~~ 193 (282)
...+.+..+.|+++|+++..
T Consensus 106 -g~~~~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 106 -DKVLAKVLAQMNYGGCVAAC 125 (177)
T ss_dssp -HHHHHHHHHTEEEEEEEEEC
T ss_pred -hHHHHHHHHHhccccceEee
Confidence 45789999999999999874
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=85.69 E-value=0.17 Score=39.65 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=28.5
Q ss_pred CCCCceeEEEec--chh------------hccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 153 FDHCSFDAVVCA--VSV------------QYLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 153 ~~~~s~D~v~~~--~~l------------~~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
++++|+|+|+.. +.+ +++......+++++|+|||||.+++.
T Consensus 19 lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~ 73 (256)
T d1g60a_ 19 VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (256)
T ss_dssp SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence 567889999887 211 01112245889999999999998755
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=85.23 E-value=0.13 Score=38.36 Aligned_cols=91 Identities=16% Similarity=0.021 Sum_probs=53.5
Q ss_pred CCCCeEEEeCC-c-ccchhhhh--cCCCeEEEEcCCHHHHHhCCCCCceEEeecccc---cCCCCCCCceeEEEecchhh
Q 023470 96 RPGSEVLDLMS-S-WVSHLPQE--VSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQD---QKLEFDHCSFDAVVCAVSVQ 168 (282)
Q Consensus 96 ~~~~~vLDiGc-G-~~~~~~~~--~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~---~~l~~~~~s~D~v~~~~~l~ 168 (282)
+++..||=-|+ | .|....+. .-+++|+++.-|++..+.++....-.+.+.... .......+.+|+|+-+-.
T Consensus 22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg-- 99 (167)
T d1tt7a2 22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG-- 99 (167)
T ss_dssp GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC--
T ss_pred CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCc--
Confidence 34566887776 3 34333222 146799999988765544433221112222110 111233467999887644
Q ss_pred ccCCHHHHHHHHHHcccCCcEEEEE
Q 023470 169 YLQQPEKVFAEVFRVLKPGGVFIVS 193 (282)
Q Consensus 169 ~~~~~~~~l~~~~r~LkpgG~li~~ 193 (282)
...+.+..+.|+|+|++++.
T Consensus 100 -----g~~~~~~~~~l~~~G~iv~~ 119 (167)
T d1tt7a2 100 -----GKQLASLLSKIQYGGSVAVS 119 (167)
T ss_dssp -----THHHHHHHTTEEEEEEEEEC
T ss_pred -----HHHHHHHHHHhccCceEEEe
Confidence 45778999999999998864
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=85.07 E-value=0.23 Score=40.20 Aligned_cols=44 Identities=27% Similarity=0.432 Sum_probs=31.8
Q ss_pred CCCCceeEEEec--chh------------hccCCHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 153 FDHCSFDAVVCA--VSV------------QYLQQPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 153 ~~~~s~D~v~~~--~~l------------~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
++++++|+|+.. +.. +++......+++++|+|||+|.+++....
T Consensus 27 l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~ 84 (320)
T d1booa_ 27 FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG 84 (320)
T ss_dssp SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccc
Confidence 567899999987 211 12222455899999999999999987543
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=84.04 E-value=1.4 Score=30.47 Aligned_cols=92 Identities=10% Similarity=0.125 Sum_probs=55.1
Q ss_pred eEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCCCC-ceEEeeccccc---CCCCCCCceeEEEecchhhccCC
Q 023470 100 EVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPRLE-YFIVKDLNQDQ---KLEFDHCSFDAVVCAVSVQYLQQ 172 (282)
Q Consensus 100 ~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~~~~---~l~~~~~s~D~v~~~~~l~~~~~ 172 (282)
+++=+||| .|..++... .+..|+.+|.+++.++..+... ...++|..... ...+ ...|.+++... .+
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i--~~a~~vi~~~~----~~ 75 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGI--RNFEYVIVAIG----AN 75 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTG--GGCSEEEECCC----SC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCC--ccccEEEEEcC----ch
Confidence 35667998 466655543 6789999999999998776543 45667664321 1122 34677666442 12
Q ss_pred HH-HHHHHHHHcccCCcEEEEEEcCc
Q 023470 173 PE-KVFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 173 ~~-~~l~~~~r~LkpgG~li~~~~~~ 197 (282)
.. ..+-.+.+-+.|.+.++....+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~iiar~~~~ 101 (134)
T d2hmva1 76 IQASTLTTLLLKELDIPNIWVKAQNY 101 (134)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCSH
T ss_pred HHhHHHHHHHHHHcCCCcEEeecccH
Confidence 22 24444555566777776665444
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=83.79 E-value=0.52 Score=34.63 Aligned_cols=93 Identities=15% Similarity=0.075 Sum_probs=55.1
Q ss_pred hCCCCCeEEEeCCcc-c---chhhhhcCCCeEEEEcCCHHHHHhCCCCCceEEeecccccCC------CCCCCceeEEEe
Q 023470 94 MLRPGSEVLDLMSSW-V---SHLPQEVSYKRVVGHGLNAQELAKNPRLEYFIVKDLNQDQKL------EFDHCSFDAVVC 163 (282)
Q Consensus 94 ~~~~~~~vLDiGcG~-~---~~~~~~~~~~~v~giD~s~~~l~~~~~~~~~~~~d~~~~~~l------~~~~~s~D~v~~ 163 (282)
.++++.+||=+|||. | ...+.......|+++|.+++-++.+++..--.+.+....... ....+-+|+|+-
T Consensus 25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid 104 (175)
T d1cdoa2 25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLE 104 (175)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeee
Confidence 577899999999963 2 223334477899999999987777665542223232211111 011245788876
Q ss_pred cchhhccCCHHHHHHHHHHcccCCcEEEE
Q 023470 164 AVSVQYLQQPEKVFAEVFRVLKPGGVFIV 192 (282)
Q Consensus 164 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 192 (282)
+-. ....+..+...+++||..++
T Consensus 105 ~~G------~~~~~~~a~~~~~~g~~~~~ 127 (175)
T d1cdoa2 105 CVG------NVGVMRNALESCLKGWGVSV 127 (175)
T ss_dssp CSC------CHHHHHHHHHTBCTTTCEEE
T ss_pred ecC------CHHHHHHHHHHhhCCCccee
Confidence 543 24556777777766644433
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=81.69 E-value=0.64 Score=36.63 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=35.2
Q ss_pred HHHHHHhhCCCCCeEEEeCCcccchhhh-hcCCCeEEEEcCCHHHHHhCC
Q 023470 87 LTNLYRQMLRPGSEVLDLMSSWVSHLPQ-EVSYKRVVGHGLNAQELAKNP 135 (282)
Q Consensus 87 ~~~~~~~~~~~~~~vLDiGcG~~~~~~~-~~~~~~v~giD~s~~~l~~~~ 135 (282)
+..++.....++..|||.=||.|..+.+ ..-+.+.+|+|++++..+.+.
T Consensus 197 ~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~ 246 (279)
T d1eg2a_ 197 IERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQ 246 (279)
T ss_dssp HHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHH
T ss_pred HHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHH
Confidence 3444555567899999998887764433 335789999999998765544
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=81.04 E-value=11 Score=29.83 Aligned_cols=97 Identities=21% Similarity=0.137 Sum_probs=57.7
Q ss_pred CeEEEeCCcccchhhhh--cCCCeEEEEcCCHHHHH-------hCC--CCC--ceEEeecccc--c---CCCCCCCceeE
Q 023470 99 SEVLDLMSSWVSHLPQE--VSYKRVVGHGLNAQELA-------KNP--RLE--YFIVKDLNQD--Q---KLEFDHCSFDA 160 (282)
Q Consensus 99 ~~vLDiGcG~~~~~~~~--~~~~~v~giD~s~~~l~-------~~~--~~~--~~~~~d~~~~--~---~l~~~~~s~D~ 160 (282)
..|+.+|||.-....+. .++.+++-+|. +++++ ... ... .....|+..+ . ...+....--+
T Consensus 91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl 169 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA 169 (297)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred CeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCEE
Confidence 35677999954332222 25678888885 44432 221 112 3344444322 1 11222333456
Q ss_pred EEecchhhccC--CHHHHHHHHHHcccCCcEEEEEEcC
Q 023470 161 VVCAVSVQYLQ--QPEKVFAEVFRVLKPGGVFIVSFSN 196 (282)
Q Consensus 161 v~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~~~~~ 196 (282)
+++-.++.+++ +...+|+.+.....||+.+++...+
T Consensus 170 ~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~ 207 (297)
T d2uyoa1 170 WLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP 207 (297)
T ss_dssp EEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred EEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 67777888886 4455999999999999999998654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.71 E-value=2.2 Score=29.54 Aligned_cols=91 Identities=10% Similarity=-0.022 Sum_probs=54.5
Q ss_pred CeEEEeCCc-ccchhhhhc--CCCeEEEEcCCHHHHHhCCC--CCceEEeecccc---cCCCCCCCceeEEEecchhhcc
Q 023470 99 SEVLDLMSS-WVSHLPQEV--SYKRVVGHGLNAQELAKNPR--LEYFIVKDLNQD---QKLEFDHCSFDAVVCAVSVQYL 170 (282)
Q Consensus 99 ~~vLDiGcG-~~~~~~~~~--~~~~v~giD~s~~~l~~~~~--~~~~~~~d~~~~---~~l~~~~~s~D~v~~~~~l~~~ 170 (282)
++|+=+|+| .|..+++.. .+..|+.+|.+++.++.... ....+.+|.... ....+ ...|.+++...
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i--~~a~~vv~~t~---- 74 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGI--EDADMYIAVTG---- 74 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTT--TTCSEEEECCS----
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcCh--hhhhhhcccCC----
Confidence 478889998 566665543 67899999999988765432 234566666433 12233 45788887532
Q ss_pred CCHHH--HHHHHHHcccCCcEEEEEEcCc
Q 023470 171 QQPEK--VFAEVFRVLKPGGVFIVSFSNR 197 (282)
Q Consensus 171 ~~~~~--~l~~~~r~LkpgG~li~~~~~~ 197 (282)
+.+. ......+.+.+.- .+..+.++
T Consensus 75 -~d~~N~~~~~~~k~~~~~~-iI~~~~~~ 101 (132)
T d1lssa_ 75 -KEEVNLMSSLLAKSYGINK-TIARISEI 101 (132)
T ss_dssp -CHHHHHHHHHHHHHTTCCC-EEEECSST
T ss_pred -cHHHHHHHHHHHHHcCCce-EEEEecCH
Confidence 3333 4445556677763 34333333
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=80.46 E-value=0.24 Score=37.34 Aligned_cols=95 Identities=19% Similarity=0.206 Sum_probs=53.9
Q ss_pred CCCeEEEeCCcccc-hhhhh--cCCCeEEEEcCCHHHHHhCCCCC-ceEEeecccc----------cCCC--C-------
Q 023470 97 PGSEVLDLMSSWVS-HLPQE--VSYKRVVGHGLNAQELAKNPRLE-YFIVKDLNQD----------QKLE--F------- 153 (282)
Q Consensus 97 ~~~~vLDiGcG~~~-~~~~~--~~~~~v~giD~s~~~l~~~~~~~-~~~~~d~~~~----------~~l~--~------- 153 (282)
+..+||=||+|... ..... .-+++|+.+|.++..+++.+... .++..+.... ..+. +
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~ 107 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA 107 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence 45789999998532 22221 25789999999986665433222 1111100000 0000 0
Q ss_pred ---CCCceeEEEecchhhccCCHHHHHHHHHHcccCCcEEE
Q 023470 154 ---DHCSFDAVVCAVSVQYLQQPEKVFAEVFRVLKPGGVFI 191 (282)
Q Consensus 154 ---~~~s~D~v~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 191 (282)
.-...|+|+..-.+---.-|.-+-+++.+.+|||..++
T Consensus 108 l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 108 VLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp HHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence 01247999988655544444446688999999987765
|