Citrus Sinensis ID: 023487

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
Protein Sequence
MARTSTKQSDKNKVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIRLLVSRDPLFVNTSVSLLHSTITSVSVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGIELPLALFGMAGMNLLNISLGIDLFNAFKREKNPQQTSYHRRK
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccHHccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcccccccc
Coil and Loop (DISEMBL)
martstkqsdknkVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIRLLvsrdplfvntSVSLLHSTITSVSVVFIVVNQWLRNglngmfehseLVGSAwlwaypalcfscgyfaydqWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLHVRKVRRmagirdsksRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGIELPLALFGMAGMNLLNISLGIDLFnafkreknpqqtsyhrrk
Flexible Loop (DISEMBL)
martstkqsdknkvgVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIRLLVSRDPLFVNTSVSLLHSTITSVSVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLHVRKVRRmagirdsksrivrVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGIELPLALFGMAGMNLLNISLGIDLFNAfkreknpqqtsyhrrk
Low Complexity Region (SEG)
MARTSTKQSDKNKVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIRLLVSRDPLFVNTSVSLLHstitsvsvvfivvNQWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGIELPLALFGMAGMNLLNISLGIDLFNAFKREKNPQQTSYHRRK
Disordered region (IsUnstruct)
*************VGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIRLLVSRDPLFVNTSVSLLHSTITSVSVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGIELPLALFGMAGMNLLNISLGIDLFNAF***************
Disordered Region (DISOPRED)
***************VFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIRLLVSRDPLFVNTSVSLLHSTITSVSVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGIELPLALFGMAGMNLLNISLGIDLFN*****************
Disordered Region (DISEMBL)
**********KNKVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIRLLVSRDPLFVNTSVSLLHSTITSVSVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGIELPLALFGMAGMNLLNISLGIDLFNAFKRE************
Disordered Region (DISPRO)
**********KNKVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIRLLVSRDPLFVNTSVSLLHSTITSVSVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGIELPLALFGMAGMNLLNISLGIDLFNAFKRE************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MARTSTKQSDKNKVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIRLLVSRDPLFVNTSVSLLHSTITSVSVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGIELPLALFGMAGMNLLNISLGIDLFNAFKREKNPQQTSYHRRK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	281	2.2.26 [Sep-21-2011]
A8WGS4	246	TLC domain-containing pro	no	no	0.487	0.556	0.292	6e-08
Q96CP7	247	TLC domain-containing pro	no	no	0.444	0.506	0.281	7e-05

>sp|A8WGS4|TLCD2_DANRE TLC domain-containing protein 2 OS=Danio rerio GN=tlcd2 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 86/154 (55%), Gaps = 17/154 (11%)

Query: 70  NTSVSLLHSTITSV-SVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAY 128
           N S S +HS IT V SV+   ++  +           +L+ +  ++++  +  S GYF Y
Sbjct: 42  NISTSFVHSLITGVWSVLCFCMHPQMA---------EDLIETHSVFSHALVSVSIGYFIY 92

Query: 129 DQWDML--QYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLHVR 186
           D  DM+  Q  ++S     +L HH++++ CF +++     + + ++ L+ E++S+FLH+R
Sbjct: 93  DFLDMVINQKIIHSW---ELLFHHVVVITCFGISVLTCRYVGFAVVALLVEINSVFLHLR 149

Query: 187 KVRRMAGIRDSKSRIVRVEWVLNWITFFLARIAS 220
           +V RMA +  +KS   RV  ++N  T+ + RI +
Sbjct: 150 QVLRMANL--AKSTFYRVNSMINLGTYVVFRINT 181

Danio rerio (taxid: 7955)

>sp|Q96CP7|TLCD1_HUMAN TLC domain-containing protein 1 OS=Homo sapiens GN=TLCD1 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 10/135 (7%)

Query: 108 VGSAW-LWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPG---ILVHHLLLLVCFTLALYR 163
           + +AW L  Y  +CFS GYF +D  D++     SG        LVHH++ +  F   ++ 
Sbjct: 76  IETAWSLSGYLLVCFSAGYFIHDTVDIVA----SGQTRASWEYLVHHVMAMGAFFSGIFW 131

Query: 164 NVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLL 223
           +  +   +LTL+ E+ +IFL +R + +++  +D    + RV   +N + +FL R+A    
Sbjct: 132 SSFVGGGVLTLLVEVSNIFLTIRMMMKISNAQDHL--LYRVNKYVNLVMYFLFRLAPQAY 189

Query: 224 ITIKLIRDASKFEKG 238
           +T   +R  ++   G
Sbjct: 190 LTHFFLRYVNQRTLG 204

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
224063080	282	predicted protein [Populus trichocarpa]	0.982	0.978	0.793	1e-125
255545396	281	conserved hypothetical protein [Ricinus	1.0	1.0	0.765	1e-125
224084886	281	predicted protein [Populus trichocarpa]	0.989	0.989	0.784	1e-125
297845168	288	hypothetical protein ARALYDRAFT_472418 [	0.989	0.965	0.724	1e-115
18395035	288	TRAM, LAG1 and CLN8 (TLC) lipid-sensing	0.978	0.954	0.724	1e-115
225459567	274	PREDICTED: uncharacterized protein LOC10	0.967	0.992	0.755	1e-112
388506888	276	unknown [Lotus japonicus]	0.953	0.971	0.704	1e-108
302141811	251	unnamed protein product [Vitis vinifera]	0.882	0.988	0.778	1e-105
449513333	282	PREDICTED: uncharacterized protein LOC10	0.950	0.946	0.702	1e-105
449465449	282	PREDICTED: uncharacterized protein LOC10	0.964	0.960	0.692	1e-104

>gi|224063080|ref|XP_002300986.1| predicted protein [Populus trichocarpa] gi|222842712|gb|EEE80259.1| predicted protein [Populus trichocarpa]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/276 (79%), Positives = 242/276 (87%)

Query: 3   RTSTKQSDKNKVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIRLLV 62
           RTS  Q++KNK G FFLATL+LW VSVLFEI FNKR ELL+IVAGA FFQIANWV+R  +
Sbjct: 4   RTSQSQNEKNKAGTFFLATLILWFVSVLFEIIFNKRSELLWIVAGAVFFQIANWVVRSFI 63

Query: 63  SRDPLFVNTSVSLLHSTITSVSVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPALCFS 122
           SRDPLFVNTSVSLLHSTI SVSVVFI+ NQ L+ G NGMFEHS+LVG  W WAY ALCFS
Sbjct: 64  SRDPLFVNTSVSLLHSTIISVSVVFILANQRLKKGPNGMFEHSQLVGGTWEWAYAALCFS 123

Query: 123 CGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHSIF 182
           CGYFAYDQ DML YRLYSGLIP ILVHHL+LLVCFTLALYRNVTINYLILTL+CELHSIF
Sbjct: 124 CGYFAYDQLDMLHYRLYSGLIPSILVHHLILLVCFTLALYRNVTINYLILTLVCELHSIF 183

Query: 183 LHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGIELP 242
           LHVRKVRRMAG+RD+KS IVR+EWVLNW+TF  AR  SH+LITIKLI DA +FEKG+ LP
Sbjct: 184 LHVRKVRRMAGVRDAKSTIVRMEWVLNWLTFIFARSLSHILITIKLIADAPRFEKGVVLP 243

Query: 243 LALFGMAGMNLLNISLGIDLFNAFKREKNPQQTSYH 278
           LALFGMAGMNL+N  LGIDLFNAF RE+ PQ++S+H
Sbjct: 244 LALFGMAGMNLINAGLGIDLFNAFTRERTPQKSSHH 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545396|ref|XP_002513758.1| conserved hypothetical protein [Ricinus communis] gi|223546844|gb|EEF48341.1| conserved hypothetical protein [Ricinus communis]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/281 (76%), Positives = 247/281 (87%)

Query: 1   MARTSTKQSDKNKVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIRL 60
           MARTS  ++D N+ G FFLATL+LW +SVLFEI FN+R+EL  I+AGA FFQI NW IR 
Sbjct: 1   MARTSHTRNDHNRAGTFFLATLILWFISVLFEILFNQRRELYSIIAGAFFFQITNWAIRF 60

Query: 61  LVSRDPLFVNTSVSLLHSTITSVSVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPALC 120
           LVSRDPLFVNTSVSLLHSTITSVSVVFI+VNQ+L    NGMFEHS+LVG  W WAYPALC
Sbjct: 61  LVSRDPLFVNTSVSLLHSTITSVSVVFILVNQYLNGASNGMFEHSQLVGGTWQWAYPALC 120

Query: 121 FSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHS 180
           FSCGYFAYDQ DML YRLYSGLIP IL+HHL+LL+CFTLALYRNVT+NYLILTLICELHS
Sbjct: 121 FSCGYFAYDQLDMLLYRLYSGLIPSILMHHLILLICFTLALYRNVTVNYLILTLICELHS 180

Query: 181 IFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGIE 240
           IFLHVRKVRRMAG+RD+KS IV++EWVLNW+TF  AR  SH+LITIKL+RDASKFEKG++
Sbjct: 181 IFLHVRKVRRMAGVRDAKSNIVKLEWVLNWVTFIFARCLSHILITIKLLRDASKFEKGVQ 240

Query: 241 LPLALFGMAGMNLLNISLGIDLFNAFKREKNPQQTSYHRRK 281
           LP ALFGM GMNLLN  LGIDLFNAF+RE+NP ++S++ ++
Sbjct: 241 LPFALFGMVGMNLLNAGLGIDLFNAFRRERNPLRSSHNHQE 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084886|ref|XP_002307436.1| predicted protein [Populus trichocarpa] gi|222856885|gb|EEE94432.1| predicted protein [Populus trichocarpa]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/279 (78%), Positives = 249/279 (89%), Gaps = 1/279 (0%)

Query: 1   MARTSTK-QSDKNKVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIR 59
           MART+++ Q++KNKVG FFLATL+LW VSVLFEI FNKR ELL+IVAGAC FQIANW IR
Sbjct: 1   MARTTSQNQNEKNKVGAFFLATLILWFVSVLFEIFFNKRTELLWIVAGACLFQIANWAIR 60

Query: 60  LLVSRDPLFVNTSVSLLHSTITSVSVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPAL 119
             VSRDPLFVNTSVSLLHSTI SVSVV I+VNQ L+NG +GMFEHS+LVG  W WAY AL
Sbjct: 61  SFVSRDPLFVNTSVSLLHSTIISVSVVSILVNQCLKNGSDGMFEHSQLVGGTWEWAYAAL 120

Query: 120 CFSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELH 179
           CFSCGYFAYDQ DML YRLYSGLIP ILVHH++LLVCFTLALYRNVTINYLILTL+CELH
Sbjct: 121 CFSCGYFAYDQLDMLFYRLYSGLIPSILVHHMILLVCFTLALYRNVTINYLILTLVCELH 180

Query: 180 SIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGI 239
           SIFLHVRKVRRMAGIR++KS IVR+EWVLNW+TF  AR  +H+LIT+KL+ DA KFEKG+
Sbjct: 181 SIFLHVRKVRRMAGIRNAKSTIVRIEWVLNWLTFIFARSLTHILITVKLVADAPKFEKGV 240

Query: 240 ELPLALFGMAGMNLLNISLGIDLFNAFKREKNPQQTSYH 278
           ELPLALFGMAGMNL+N+ LGIDLFNAFKREK+ + +++H
Sbjct: 241 ELPLALFGMAGMNLINVGLGIDLFNAFKREKSTENSNHH 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845168|ref|XP_002890465.1| hypothetical protein ARALYDRAFT_472418 [Arabidopsis lyrata subsp. lyrata] gi|297336307|gb|EFH66724.1| hypothetical protein ARALYDRAFT_472418 [Arabidopsis lyrata subsp. lyrata]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/283 (72%), Positives = 235/283 (83%), Gaps = 5/283 (1%)

Query: 1   MARTSTKQS--DKNKVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVI 58
           MAR     +   KN  G FFLATLLLW VSV+FEIAFN R ELL+++ G CFFQ+ NWV+
Sbjct: 1   MARNGIGNTVVKKNGAGEFFLATLLLWLVSVVFEIAFNLRTELLWVICGGCFFQLMNWVV 60

Query: 59  RLLVSRDPLFVNTSVSLLHSTITSVSVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPA 118
           R  +SRDPLFVNTSVSLLHS ITS SVVFI++NQ L  GL+ MF+HSELVG  W WAYPA
Sbjct: 61  RSWISRDPLFVNTSVSLLHSIITSASVVFILLNQCLAKGLDEMFDHSELVGGTWKWAYPA 120

Query: 119 LCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICEL 178
           LCFSCGYFAYDQWDMLQYRLYSGLIP ILVHHL+LLVCFTLALYRNVTINYLILTLICE+
Sbjct: 121 LCFSCGYFAYDQWDMLQYRLYSGLIPSILVHHLVLLVCFTLALYRNVTINYLILTLICEM 180

Query: 179 HSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKG 238
           HSIFLHVRK+RRMAGIRDS + +V++EWVLNW  F  AR   H+LITIKLI+DA KF KG
Sbjct: 181 HSIFLHVRKLRRMAGIRDSNTALVKLEWVLNWTAFVFARCIPHILITIKLIKDAHKFGKG 240

Query: 239 IELPLALFGMAGMNLLNISLGIDLFNAFKREKN---PQQTSYH 278
           +ELPLAL GMAGMN+LN+ LG+DLF+AF+RE++    Q+ S H
Sbjct: 241 VELPLALSGMAGMNILNVGLGLDLFHAFRRERSNRRNQENSNH 283

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395035|ref|NP_564152.1| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana] gi|5263332|gb|AAD41434.1|AC007727_23 F8K7.23 [Arabidopsis thaliana] gi|6552728|gb|AAF16527.1|AC013482_1 T26F17.1 [Arabidopsis thaliana] gi|17380914|gb|AAL36269.1| unknown protein [Arabidopsis thaliana] gi|20258983|gb|AAM14207.1| unknown protein [Arabidopsis thaliana] gi|21593249|gb|AAM65198.1| unknown [Arabidopsis thaliana] gi|332192036|gb|AEE30157.1| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/283 (72%), Positives = 234/283 (82%), Gaps = 8/283 (2%)

Query: 1   MARTSTKQSD--KNKVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVI 58
           MAR     S   KN  G FFLATLLLW VSV+FEIAFN R ELL+++ G CFFQ+ NWV+
Sbjct: 1   MARNGIGSSGGKKNGAGQFFLATLLLWLVSVVFEIAFNLRTELLWVICGGCFFQLMNWVV 60

Query: 59  RLLVSRDPLFVNTSVSLLHSTITSVSVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPA 118
           R  +SRDP+FVNTSVSLLHS ITS SVVFI++NQ L  GL+ MF+HSELVG  W WAYPA
Sbjct: 61  RSWISRDPIFVNTSVSLLHSIITSASVVFILLNQCLAKGLDEMFDHSELVGGTWKWAYPA 120

Query: 119 LCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICEL 178
           LCFSCGYFAYDQWDMLQYRLYSGLIP ILVHHL+LLVCFTLALYRNVTINYLILTLICE+
Sbjct: 121 LCFSCGYFAYDQWDMLQYRLYSGLIPSILVHHLVLLVCFTLALYRNVTINYLILTLICEM 180

Query: 179 HSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKG 238
           HSIFLHVRK+RRMAGIRDS + +V++EWVLNW  F  AR   H+LITIKLI+DA KF KG
Sbjct: 181 HSIFLHVRKLRRMAGIRDSNTALVKLEWVLNWTAFVFARCIPHILITIKLIKDAHKFGKG 240

Query: 239 IELPLALFGMAGMNLLNISLGIDLFNAFKREKNPQQTSYHRRK 281
           +ELPLAL GMAGMN+LN+ LG+DLF+AF+RE++      HRR 
Sbjct: 241 VELPLALSGMAGMNILNVGLGLDLFHAFRRERS------HRRN 277

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459567|ref|XP_002285859.1| PREDICTED: uncharacterized protein LOC100267707 [Vitis vinifera]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/274 (75%), Positives = 231/274 (84%), Gaps = 2/274 (0%)

Query: 1   MARTSTKQSDKNKVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIRL 60
           MAR    Q      G FFLATLLLW +SVLFEI FNKR+ELL +V G CF+Q ANWVIR 
Sbjct: 1   MARA--PQGQNKAPGAFFLATLLLWMISVLFEIVFNKRRELLSVVGGFCFYQFANWVIRS 58

Query: 61  LVSRDPLFVNTSVSLLHSTITSVSVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPALC 120
            VS+DPL VNT VSLLHS+ITS SV+FI+VN+ +R G NGMFEHS+LVG+ W WAYPALC
Sbjct: 59  WVSKDPLLVNTCVSLLHSSITSASVIFILVNELIRMGSNGMFEHSKLVGNTWPWAYPALC 118

Query: 121 FSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHS 180
           FSCGYFAYDQWDML YRLYSG IP ILVHHLLLLVCFTLALYRNVTINYLILTLICELHS
Sbjct: 119 FSCGYFAYDQWDMLHYRLYSGWIPSILVHHLLLLVCFTLALYRNVTINYLILTLICELHS 178

Query: 181 IFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGIE 240
           IFLH RKVRRMAGIRD+KS+ V+ EWVL+WITF +AR A H+LITIKLIRD+ +FEKG+E
Sbjct: 179 IFLHTRKVRRMAGIRDAKSKAVKAEWVLSWITFIVARFAPHILITIKLIRDSPRFEKGVE 238

Query: 241 LPLALFGMAGMNLLNISLGIDLFNAFKREKNPQQ 274
           LPLALFGM GMNLLN  LGIDLF A++REK+ Q 
Sbjct: 239 LPLALFGMGGMNLLNTFLGIDLFRAYRREKSSQH 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506888|gb|AFK41510.1| unknown [Lotus japonicus]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/271 (70%), Positives = 225/271 (83%), Gaps = 3/271 (1%)

Query: 12  NKVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIRLLVSR--DPLFV 69
           NKV  FF  TL+LW  S+ F I FN R  LL+++AG+ F+Q AN +IR   S+  DPLFV
Sbjct: 4   NKVEAFFSTTLILWLCSLSFHILFNHRTHLLYVLAGSFFYQTANSLIRFFFSKPTDPLFV 63

Query: 70  NTSVSLLHSTITSVSVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYD 129
           NT+VSLLHS +TS SV+FI+  QWL NG +GMF+HS+LV   W WA+ AL FSCGYFAYD
Sbjct: 64  NTAVSLLHSAVTSTSVIFILSKQWLSNGSSGMFDHSQLVEGTWPWAFEALSFSCGYFAYD 123

Query: 130 QWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLHVRKVR 189
           QWDML++RLY+G IP ILVHHL+LL+CFTLALYRNVTINYLILTLICELHSIFLHVRKVR
Sbjct: 124 QWDMLRFRLYNGWIPSILVHHLVLLICFTLALYRNVTINYLILTLICELHSIFLHVRKVR 183

Query: 190 RMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGIELPLALFGMA 249
           RMAG+RD+KS IV++EW LNW+TF +AR ASH+LIT+KLIRDA KFEKG+ELP+ALFGMA
Sbjct: 184 RMAGVRDAKSSIVKLEWFLNWVTFLVARFASHILITVKLIRDAHKFEKGVELPMALFGMA 243

Query: 250 GMNLLNISLGIDLFNAFKREKNPQQTSYHRR 280
           GMNLLNI LGIDL  AFKREK  QQ + HR+
Sbjct: 244 GMNLLNIGLGIDLLKAFKREKKSQQAN-HRQ 273

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141811|emb|CBI19014.3| unnamed protein product [Vitis vinifera]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/248 (77%), Positives = 217/248 (87%)

Query: 27  VSVLFEIAFNKRKELLFIVAGACFFQIANWVIRLLVSRDPLFVNTSVSLLHSTITSVSVV 86
           +SVLFEI FNKR+ELL +V G CF+Q ANWVIR  VS+DPL VNT VSLLHS+ITS SV+
Sbjct: 2   ISVLFEIVFNKRRELLSVVGGFCFYQFANWVIRSWVSKDPLLVNTCVSLLHSSITSASVI 61

Query: 87  FIVVNQWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPGI 146
           FI+VN+ +R G NGMFEHS+LVG+ W WAYPALCFSCGYFAYDQWDML YRLYSG IP I
Sbjct: 62  FILVNELIRMGSNGMFEHSKLVGNTWPWAYPALCFSCGYFAYDQWDMLHYRLYSGWIPSI 121

Query: 147 LVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEW 206
           LVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLH RKVRRMAGIRD+KS+ V+ EW
Sbjct: 122 LVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLHTRKVRRMAGIRDAKSKAVKAEW 181

Query: 207 VLNWITFFLARIASHLLITIKLIRDASKFEKGIELPLALFGMAGMNLLNISLGIDLFNAF 266
           VL+WITF +AR A H+LITIKLIRD+ +FEKG+ELPLALFGM GMNLLN  LGIDLF A+
Sbjct: 182 VLSWITFIVARFAPHILITIKLIRDSPRFEKGVELPLALFGMGGMNLLNTFLGIDLFRAY 241

Query: 267 KREKNPQQ 274
           +REK+ Q 
Sbjct: 242 RREKSSQH 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449513333|ref|XP_004164298.1| PREDICTED: uncharacterized protein LOC101229845 [Cucumis sativus]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/269 (70%), Positives = 224/269 (83%), Gaps = 2/269 (0%)

Query: 10  DKNKVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIRLLVSRDPLFV 69
           +K++   FF ATLLLWSVS+ FEI F++R  LL++V GA F+Q AN  IRLL+S+DPL V
Sbjct: 9   EKSRAWSFFSATLLLWSVSLWFEILFDRRFRLLYVVFGALFYQSANSSIRLLLSKDPLLV 68

Query: 70  NTSVSLLHSTITSVSVVFIVVNQWLR--NGLNGMFEHSELVGSAWLWAYPALCFSCGYFA 127
           NTSVSLLHS ITS SV+F++VN+WL   +G  GMFEHS+L G  W WA+ ALCFSCGYFA
Sbjct: 69  NTSVSLLHSIITSASVLFVLVNRWLSYGSGSEGMFEHSQLFGGTWPWAFAALCFSCGYFA 128

Query: 128 YDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLHVRK 187
           YDQWDMLQY LYSG IP ILVHHL+LL+CFTLALYRNVTINYL LTLICE+HSIFLHVR+
Sbjct: 129 YDQWDMLQYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLNLTLICEMHSIFLHVRR 188

Query: 188 VRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGIELPLALFG 247
           +RRMAG+RD+KS IV+VEW+LNW+TF  AR   H+LIT+KLI DASKF+KG+ELPLAL G
Sbjct: 189 LRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDASKFDKGVELPLALSG 248

Query: 248 MAGMNLLNISLGIDLFNAFKREKNPQQTS 276
           MAGMNLLN  LGIDL NA K+E N ++T 
Sbjct: 249 MAGMNLLNALLGIDLLNAVKKESNYKKTD 277

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465449|ref|XP_004150440.1| PREDICTED: uncharacterized protein LOC101205996 [Cucumis sativus]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/273 (69%), Positives = 225/273 (82%), Gaps = 2/273 (0%)

Query: 6   TKQSDKNKVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIRLLVSRD 65
           T   +K++   FF ATLLLWSVS+ FEI F++R  LL++V GA F+Q AN  IRLL+S+D
Sbjct: 5   TLLKEKSRAWSFFSATLLLWSVSLWFEILFDRRFRLLYVVFGALFYQSANSSIRLLLSKD 64

Query: 66  PLFVNTSVSLLHSTITSVSVVFIVVNQWLR--NGLNGMFEHSELVGSAWLWAYPALCFSC 123
           PL VNTSVSLLHS ITS SV+F++VN+WL   +G  GMFEHS+L G  W WA+ ALCFSC
Sbjct: 65  PLLVNTSVSLLHSIITSASVLFVLVNRWLSYGSGSEGMFEHSQLFGGTWPWAFAALCFSC 124

Query: 124 GYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFL 183
           GYFAYDQWDML+Y LYSG IP ILVHHL+LL+CFTLALYRNVTINYL LTLICE+HSIFL
Sbjct: 125 GYFAYDQWDMLRYGLYSGWIPAILVHHLVLLICFTLALYRNVTINYLNLTLICEMHSIFL 184

Query: 184 HVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGIELPL 243
           HVR++RRMAG+RD+KS IV+VEW+LNW+TF  AR   H+LIT+KLI DASKF+KG+ELPL
Sbjct: 185 HVRRLRRMAGVRDAKSIIVKVEWILNWLTFVFARFVPHILITVKLIIDASKFDKGVELPL 244

Query: 244 ALFGMAGMNLLNISLGIDLFNAFKREKNPQQTS 276
           AL GMAGMNLLN  LGIDL NA K+E N ++T 
Sbjct: 245 ALSGMAGMNLLNALLGIDLLNAVKKESNYKKTD 277

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
TAIR|locus:2201093	288	AT1G21790 "AT1G21790" [Arabido	0.964	0.940	0.706	6.7e-104
ZFIN|ZDB-GENE-080204-81	246	tlcd2 "TLC domain containing 2	0.604	0.691	0.256	4.7e-12
UNIPROTKB|F1P1C2	229	TLCD2 "Uncharacterized protein	0.533	0.655	0.294	6.2e-10
UNIPROTKB|K7ELX5	147	TLCD1 "TLC domain-containing p	0.416	0.795	0.291	5.5e-09
RGD|1562631	162	Tlcd2 "TLC domain containing 2	0.476	0.827	0.285	7.3e-08
UNIPROTKB|A8MYP9	200	TLCD1 "TLC domain containing 1	0.416	0.585	0.291	7.7e-08
UNIPROTKB|J9NVQ2	247	TLCD1 "Uncharacterized protein	0.405	0.461	0.316	8e-08
ZFIN|ZDB-GENE-041010-173	251	tlcd1 "TLC domain containing 1	0.758	0.848	0.239	8.6e-08
UNIPROTKB|E1BNN2	264	TLCD2 "Uncharacterized protein	0.498	0.530	0.279	1.4e-07
UNIPROTKB|Q96CP7	247	TLCD1 "TLC domain-containing p	0.416	0.473	0.291	3.4e-07

TAIR|locus:2201093 AT1G21790 "AT1G21790" [Arabidopsis thaliana (taxid:3702)]

 Score = 1029 (367.3 bits), Expect = 6.7e-104, P = 6.7e-104
 Identities = 193/273 (70%), Positives = 220/273 (80%)

Query:     1 MARTSTKQSD--KNKVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVI 58
             MAR     S   KN  G FFLATLLLW VSV+FEIAFN R ELL+++ G CFFQ+ NWV+
Sbjct:     1 MARNGIGSSGGKKNGAGQFFLATLLLWLVSVVFEIAFNLRTELLWVICGGCFFQLMNWVV 60

Query:    59 RLLVSRDPLFVNTSVSLLHXXXXXXXXXXXXXNQWLRNGLNGMFEHSELVGSAWLWAYPA 118
             R  +SRDP+FVNTSVSLLH             NQ L  GL+ MF+HSELVG  W WAYPA
Sbjct:    61 RSWISRDPIFVNTSVSLLHSIITSASVVFILLNQCLAKGLDEMFDHSELVGGTWKWAYPA 120

Query:   119 LCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICEL 178
             LCFSCGYFAYDQWDMLQYRLYSGLIP ILVHHL+LLVCFTLALYRNVTINYLILTLICE+
Sbjct:   121 LCFSCGYFAYDQWDMLQYRLYSGLIPSILVHHLVLLVCFTLALYRNVTINYLILTLICEM 180

Query:   179 HSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKG 238
             HSIFLHVRK+RRMAGIRDS + +V++EWVLNW  F  AR   H+LITIKLI+DA KF KG
Sbjct:   181 HSIFLHVRKLRRMAGIRDSNTALVKLEWVLNWTAFVFARCIPHILITIKLIKDAHKFGKG 240

Query:   239 IELPLALFGMAGMNLLNISLGIDLFNAFKREKN 271
             +ELPLAL GMAGMN+LN+ LG+DLF+AF+RE++
Sbjct:   241 VELPLALSGMAGMNILNVGLGLDLFHAFRRERS 273

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-080204-81 tlcd2 "TLC domain containing 2" [Danio rerio (taxid:7955)]

 Score = 160 (61.4 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
 Identities = 46/179 (25%), Positives = 93/179 (51%)

Query:   106 ELVGSAWLWAYPALCFSCGYFAYDQWDML--QYRLYSGLIPGILVHHLLLLVCFTLALYR 163
             +L+ +  ++++  +  S GYF YD  DM+  Q  ++S     +L HH++++ CF +++  
Sbjct:    70 DLIETHSVFSHALVSVSIGYFIYDFLDMVINQKIIHSW---ELLFHHVVVITCFGISVLT 126

Query:   164 NVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLL 223
                + + ++ L+ E++S+FLH+R+V RMA +  +KS   RV  ++N  T+ + RI +   
Sbjct:   127 CRYVGFAVVALLVEINSVFLHLRQVLRMANL--AKSTFYRVNSMINLGTYVVFRINTLAW 184

Query:   224 ITIKLIRDASKFEKGIELPLALFGMAGMNLLNISLGIDLFNA-FKREKNPQQTSYHRRK 281
             +T  L+ +           +   G+A M  +NI L   L  + F +    ++    + K
Sbjct:   185 MTRWLVLNRDLIPL-FSYTIGSVGLAIMTAMNIVLFYRLMRSDFMKASREKELRKEKEK 242

GO:0016021 "integral to membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1P1C2 TLCD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 156 (60.0 bits), Expect = 6.2e-10, P = 6.2e-10
 Identities = 46/156 (29%), Positives = 81/156 (51%)

Query:   104 HSELVGSAWLWAYPALCFSCGYFAYDQWDML-QYRLYSGLIPGILVHHLLLLVCFTLALY 162
             H +LVG+    A+  +  S GYF  D  DML   +L+      +L HH +++VCF +A+ 
Sbjct:    67 HEDLVGTHPPGAHSLVAVSVGYFLEDFVDMLCNQKLHQSW--ELLFHHSVVIVCFGIAVL 124

Query:   163 RNVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHL 222
              +  + + ++ L+ E++SIFLH+R++  MA +    +   R+  ++N  T+ + RIA+  
Sbjct:   125 LHQYVGFALVALLVEINSIFLHLRQILLMADL--VHTTCYRLNSIINLGTYVVFRIATLA 182

Query:   223 LITIKLIRDASKFEKGIELPLALFGMAGMNLLNISL 258
              +T  L  +           +   GMA M  +NI L
Sbjct:   183 WMTRWLFLNRQHVPLAT-YTVGTVGMAIMTPMNIIL 217

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|K7ELX5 TLCD1 "TLC domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 137 (53.3 bits), Expect = 5.5e-09, P = 5.5e-09
 Identities = 37/127 (29%), Positives = 67/127 (52%)

Query:   108 VGSAW-LWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPG---ILVHHLLLLVCFTLALYR 163
             + +AW L  Y  +CFS GYF +D  D++     SG        LVHH++ +  F   ++ 
Sbjct:     5 IETAWSLSGYLLVCFSAGYFIHDTVDIVA----SGQTRASWEYLVHHVMAMGAFFSGIFW 60

Query:   164 NVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLL 223
             +  +   +LTL+ E+ +IFL +R + +++  +D    + RV   +N + +FL R+A    
Sbjct:    61 SSFVGGGVLTLLVEVSNIFLTIRMMMKISNAQDHL--LYRVNKYVNLVMYFLFRLAPQAY 118

Query:   224 ITIKLIR 230
             +T   +R
Sbjct:   119 LTHFFLR 125

GO:0016021 "integral to membrane" evidence=IEA

RGD|1562631 Tlcd2 "TLC domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 127 (49.8 bits), Expect = 7.3e-08, P = 7.3e-08
 Identities = 44/154 (28%), Positives = 76/154 (49%)

Query:    44 IVAGACF--FQIANWVIRLLVS----RDP-LFVNTSVSLLHXXXXXXXXXXXXXNQWLRN 96
             +VAGA F  FQ  +W ++L+ +    RD  ++ N  VSL+H               WL  
Sbjct:     7 LVAGASFAAFQGLHWGLQLMPTPESVRDRWMWRNIFVSLMHSLLSGTGALVGL---WLFP 63

Query:    97 GL--NGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLL 154
              +  + +++H         WA   +  S GYF  D  DML  +  +     +L HHL+++
Sbjct:    64 QMVTDPIYDHPS-------WARVLVAVSVGYFVADGVDMLWNQTLAQAWD-LLCHHLVVV 115

Query:   155 VCFTLALYRNVTINYLILTLICELHSIFLHVRKV 188
              C + A+     + + +++L+ EL+SI LH+RK+
Sbjct:   116 SCLSTAVVSGHFVGFSMVSLLLELNSICLHLRKL 149

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A8MYP9 TLCD1 "TLC domain containing 1, isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 137 (53.3 bits), Expect = 7.7e-08, P = 7.7e-08
 Identities = 37/127 (29%), Positives = 67/127 (52%)

Query:   108 VGSAW-LWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPG---ILVHHLLLLVCFTLALYR 163
             + +AW L  Y  +CFS GYF +D  D++     SG        LVHH++ +  F   ++ 
Sbjct:    29 IETAWSLSGYLLVCFSAGYFIHDTVDIVA----SGQTRASWEYLVHHVMAMGAFFSGIFW 84

Query:   164 NVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLL 223
             +  +   +LTL+ E+ +IFL +R + +++  +D    + RV   +N + +FL R+A    
Sbjct:    85 SSFVGGGVLTLLVEVSNIFLTIRMMMKISNAQDHL--LYRVNKYVNLVMYFLFRLAPQAY 142

Query:   224 ITIKLIR 230
             +T   +R
Sbjct:   143 LTHFFLR 149

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|J9NVQ2 TLCD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 142 (55.0 bits), Expect = 8.0e-08, P = 8.0e-08
 Identities = 38/120 (31%), Positives = 64/120 (53%)

Query:   108 VGSAW-LWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVT 166
             + +AW L  Y  +CFS GYF +D  D++  R         LVHHL+ +  F   ++ N  
Sbjct:    76 IETAWSLSGYLLVCFSAGYFIHDSVDIVVSRQTRASWE-YLVHHLMAMSAFFSGIFWNSF 134

Query:   167 INYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIV-RVEWVLNWITFFLARIASHLLIT 225
             +   +LTL+ E+ +IFL    +R M  I +++  ++ RV   +N + +FL R+A    +T
Sbjct:   135 VGGGVLTLLVEVSNIFL---TIRMMMKINNAQHLLLYRVNKYVNLVMYFLFRLAPQAYLT 191

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-041010-173 tlcd1 "TLC domain containing 1" [Danio rerio (taxid:7955)]

 Score = 142 (55.0 bits), Expect = 8.6e-08, P = 8.6e-08
 Identities = 57/238 (23%), Positives = 108/238 (45%)

Query:    41 LLFIVAGACFFQIANWVIRLLVSRDPL---------FVNTSVSLLHXXXXXXXXXXXXXN 91
             +L+++  +  F+I +W ++++   D +         + N SVSL+H              
Sbjct:    13 VLYVLCCSVLFRILHWCLQIVARPDTVTKDRWKTWKWRNLSVSLVHSLLTGTWAVACVI- 71

Query:    92 QWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHL 151
              +    ++ +  HS    SA    Y  +  S GYF  D  D++ +  ++      L+HH+
Sbjct:    72 -YYPAMVHEI--HSTYTPSA----YMLVVVSSGYFIEDAADIV-FSGHAKASWEFLLHHV 123

Query:   152 LLLVCFTLALYRNVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWI 211
             L+L CF  A++ +  +   ++ L  E++S+FLH R +  +A +  S S I  V  VLN +
Sbjct:   124 LVLWCFLYAVFTHQYVAGAVVALFVEVNSVFLHTRLLLNLAKVAHS-SLIYTVNKVLNVV 182

Query:   212 TFFLARIASHLLITIKLIRDASKFEKGIELPLALFGMAGMNLLNISLGIDLFNAFKRE 269
             T+   R+ +   +T  L    S       L  AL+ +    L+NI + I  +   + +
Sbjct:   183 TYVTFRLGAQFYLTWYLTYHYSS------LDYALYFLITTMLMNIMILIYFYRLIRSD 234

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E1BNN2 TLCD2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 141 (54.7 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 43/154 (27%), Positives = 81/154 (52%)

Query:   114 WAYPALCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILT 173
             WA   + FS GYF  D  D+L +    G    ++ HH L++ C + A+     + + +++
Sbjct:    77 WALLLVAFSVGYFLADGTDLL-WNQTLGQAWDLVCHHALVVSCLSTAVLSGHYVGFSVVS 135

Query:   174 LICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDAS 233
             L+ EL+SIFLH+R++  ++  R + S    V    +W    LA +    L+ +  +    
Sbjct:   136 LLLELNSIFLHLRQLLLLS--RQAPSLAFSVT---SWAA--LATLVLFRLVPLGWM-SLW 187

Query:   234 KFEKGIELPLALF-----GMAGMNLLNISLGIDL 262
              F++  ++PLAL      G+A + +++ISLG+ +
Sbjct:   188 LFQQCHQIPLALVILGGTGLAFVGVMSISLGVHI 221

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q96CP7 TLCD1 "TLC domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 137 (53.3 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 37/127 (29%), Positives = 67/127 (52%)

Query:   108 VGSAW-LWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPG---ILVHHLLLLVCFTLALYR 163
             + +AW L  Y  +CFS GYF +D  D++     SG        LVHH++ +  F   ++ 
Sbjct:    76 IETAWSLSGYLLVCFSAGYFIHDTVDIVA----SGQTRASWEYLVHHVMAMGAFFSGIFW 131

Query:   164 NVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLL 223
             +  +   +LTL+ E+ +IFL +R + +++  +D    + RV   +N + +FL R+A    
Sbjct:   132 SSFVGGGVLTLLVEVSNIFLTIRMMMKISNAQDHL--LYRVNKYVNLVMYFLFRLAPQAY 189

Query:   224 ITIKLIR 230
             +T   +R
Sbjct:   190 LTHFFLR 196

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00020767 hypothetical protein (282 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	281
smart00724	205	smart00724, TLC, TRAM, LAG1 and CLN8 homology doma	8e-24
pfam03798	198	pfam03798, TRAM_LAG1_CLN8, TLC domain	1e-15

>gnl|CDD|214789 smart00724, TLC, TRAM, LAG1 and CLN8 homology domains

 Score = 95.4 bits (238), Expect = 8e-24
 Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 10/202 (4%)

Query: 63  SRDPLFVNTSVSLLHSTITSVSVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPALCFS 122
           S+     N  VS LHS I  +  ++               +    +      A     FS
Sbjct: 1   SKFNESSNRLVSYLHSVIAGLYALYSEPWLSD-------PKSLYPIQGMSPLAKFYYLFS 53

Query: 123 CGYFAYDQWDMLQY-RLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHSI 181
            GYF +D   +L +  L       +LVHH+  L+  +L+   N T   L+L L+ EL   
Sbjct: 54  LGYFIHDLVALLLFQDLKRKDFKEMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDP 113

Query: 182 FLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGIEL 241
           FLH+RK+   AG + S   +  V +VL  + FF+ R+     + + +    ++ E G+  
Sbjct: 114 FLHLRKLLNYAGRKKSL--LYDVNFVLFAVVFFVFRLILFPFLILTVTVHYAQAESGLFP 171

Query: 242 PLALFGMAGMNLLNISLGIDLF 263
           PL       + L    L I  F
Sbjct: 172 PLLYLLFLLLLLCLQLLNIYWF 193

Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains. Length = 205

>gnl|CDD|217735 pfam03798, TRAM_LAG1_CLN8, TLC domain

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 42/195 (21%), Positives = 83/195 (42%), Gaps = 12/195 (6%)

Query: 68  FVNTSVSLLHSTITSVSVVFIVVNQ--WLRNGLNGMFEHSELVGSAWLWAYPALCFSCGY 125
           F    VSL+H  ++ +  +++++++  +             ++G              GY
Sbjct: 2   FNERGVSLVHYLVSGILGLYVLLSEPWFWNPTWLWYPYPDRILGGTSALVKFYYLIQLGY 61

Query: 126 FAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLHV 185
           F +D   +L Y         +L+HH++ L+  + + + N T   L++ L+ EL   FLH+
Sbjct: 62  FLHDLLVLLFYEKRRKW--EMLLHHIITLLLISFSYFYNFTRVGLLVLLLHELSDPFLHL 119

Query: 186 RKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGIELP--- 242
           RK     G + S   +     VL  ++FFL R+     + +  I D ++ +         
Sbjct: 120 RKFLNYLGKKKSCDVLF----VLFLVSFFLVRLVLGPFLILLSILDEARLDIPGGPFNLY 175

Query: 243 -LALFGMAGMNLLNI 256
            + L  +  + LLNI
Sbjct: 176 YIFLALLLVLQLLNI 190

Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	281
KOG4474	253	consensus Uncharacterized conserved protein [Funct	100.0
KOG4561	281	consensus Uncharacterized conserved protein, conta	100.0
PF03798	198	TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TL	100.0
smart00724	205	TLC TRAM, LAG1 and CLN8 homology domains. Protein	100.0
KOG1607	318	consensus Protein transporter of the TRAM (translo	97.9
COG5058	395	LAG1 Protein transporter of the TRAM (translocatin	96.93

>KOG4474 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.7e-37  Score=276.24  Aligned_cols=245  Identities=30%  Similarity=0.441  Sum_probs=202.7

Q ss_pred             CccchhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhccC--CCCCceehhhHHHHHHHHHHHHHHHH
Q 023487           12 NKVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIRLLVS--RDPLFVNTSVSLLHSTITSVSVVFIV   89 (281)
Q Consensus        12 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~v~~S~~~f~~~~~~v~~l~~--k~~~W~nr~VS~vHAiv~~~~al~~l   89 (281)
                      |..++.+..+.++|..++.......+             ++....-++ +++  |+.+|.|+.||++||++++.++.+++
T Consensus         2 ~~~~~~~~~~~l~r~~~i~~~~~~~~-------------w~~~f~~~~-~~s~~~~~r~~n~~VSl~HS~Isg~~a~~~l   67 (253)
T KOG4474|consen    2 NRLLQPFVSFLLLRILSIVVYSALFG-------------WGLIFFDVR-WFSVYQKKRFSNLTVSLLHSTISGLWALLSL   67 (253)
T ss_pred             CchhHhHHHHHHHhhhhhhHHHHHhh-------------cceeeeeeE-eeccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            44556677777888877777655443             111111111 233  56699999999999999999997443


Q ss_pred             HhhhhccCCCCCcccCCcccCCcchhhhhHHHHHHHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHhhcccchhh
Q 023487           90 VNQWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINY  169 (281)
Q Consensus        90 ~~~~~~~~~~~~~~~~d~v~~~s~~~~~~~~iS~GYFl~Dl~~~l~~~~~~~~~~~~l~HH~~~l~~f~~~l~~~~~~~~  169 (281)
                      .   .+|   +++  .|++..+++.+..++++|+|||+||++||..++... ..+|+++||++++.||..+++++++.++
T Consensus        68 ~---~~~---~~~--~~~~~~~s~~~~~l~~fS~gYfiyD~vDm~~~~~s~-~s~e~LvHH~v~i~aF~~~lf~~~~~~~  138 (253)
T KOG4474|consen   68 L---YDP---EMV--DDPITYHSLSAYQLLLFSAGYFIYDLVDMLMNEQSE-LSWEYLVHHVVCIIAFVLGLFYSKFLGY  138 (253)
T ss_pred             H---hCc---ccc--cCHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcchhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3   343   454  788888899999999999999999999999998643 4789999999999999999999999999


Q ss_pred             HHHHHHHhhcchhhhHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccccchhHHHHHHHH
Q 023487          170 LILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGIELPLALFGMA  249 (281)
Q Consensus       170 ~~~~Ll~ElSTPFlnlR~~L~~~g~~~~~S~~y~vNg~l~~~tFf~~Ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  249 (281)
                      +.+.|++|+||||+|+|.+++++|.++ +++.++++..+|+++||++|+++..|++++++.+.+..++... +++..|+.
T Consensus       139 ~~~~llmEv~SiFLH~R~il~l~g~s~-~~~~~rv~v~lN~i~f~~fR~~~~~~l~~~~i~~~~~~~~~~~-~~~~gg~~  216 (253)
T KOG4474|consen  139 VVAALLMEVSSIFLHLRSILKLAGLST-TLPSFRVVVYLNLITFFFFRLIPQIYLTYFLIANAPFLHWYLK-LFALGGLL  216 (253)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhCCCC-CCchhHHHHHHHHHHHHHHHhccceeEEEEEeeeCCCcceehh-HHHhhhHH
Confidence            999999999999999999999999975 4558999999999999999999999999999998888777764 57777899


Q ss_pred             HHHHHHHHHHHHHHh--hhccccCCCccccccCC
Q 023487          250 GMNLLNISLGIDLFN--AFKREKNPQQTSYHRRK  281 (281)
Q Consensus       250 ~l~vLNi~wF~ki~~--g~~k~~~~~~~~~~~~~  281 (281)
                      .++++|+.++.|+++  |+..+..|+|....+||
T Consensus       217 ~l~~~n~~l~~rll~sdgf~~~~r~~~~~~~~~~  250 (253)
T KOG4474|consen  217 CLAVINTVLTLRLLASDGFLGSHRQAREDANLDE  250 (253)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHhcCcccccc
Confidence            999999999999999  67777778877776665

>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=2.8e-38  Score=286.77  Aligned_cols=255  Identities=19%  Similarity=0.111  Sum_probs=183.4

Q ss_pred             ccCCCCCccchhhhhHHHHHHHHHHHHHHhccchhHHH---HHHHHHHHHHHHHHHhhccCCCC-Cce-ehhhHHHHHHH
Q 023487            6 TKQSDKNKVGVFFLATLLLWSVSVLFEIAFNKRKELLF---IVAGACFFQIANWVIRLLVSRDP-LFV-NTSVSLLHSTI   80 (281)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~---v~~S~~~f~~~~~~v~~l~~k~~-~W~-nr~VS~vHAiv   80 (281)
                      +.+++....-.+..+....-+.+.+.|++++...+...   -..|....+.+    ..+.+|.+ ||| +|+||++||++
T Consensus         9 ~~~~~s~~v~~~~~~~~~~~l~~~~~~~l~~~v~y~~~~~~~~~s~s~~~~~----~~l~~k~~i~wn~~~~Vs~~hslv   84 (281)
T KOG4561|consen    9 RIGLTSELVKLSLGAIFFVLLTAHCHGILFYFVVYQLCNVIHNISVSLSHTY----RSLDKKLKIEWNCVRVVSTVHSLV   84 (281)
T ss_pred             cccccchhhhhccchHHHHHHHHHHHHHHHHhhhhhhhceehheeehhhhhH----hhhcCcEEEEEecCceeeeehHhh
Confidence            34444444444667788899999999999887776655   11111111111    12234444 999 99999999999


Q ss_pred             HHHHHHHHHH-hhhhccCCCCCcccCCcccCCcchhhhhHHHH--HHHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHH
Q 023487           81 TSVSVVFIVV-NQWLRNGLNGMFEHSELVGSAWLWAYPALCFS--CGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCF  157 (281)
Q Consensus        81 ~~~~al~~l~-~~~~~~~~~~~~~~~d~v~~~s~~~~~~~~iS--~GYFl~Dl~~~l~~~~~~~~~~~~l~HH~~~l~~f  157 (281)
                      ++  +++.+. .+.+         +.|...+++......-.-+  .|||+.|+..+.++....+ |+++++||+++++..
T Consensus        85 ~~--s~y~lf~~~~f---------~yD~~~~~~~~~~~~~~~~~g~gy~i~dl~~i~~~~~~~~-~~~fviHh~~s~~~v  152 (281)
T KOG4561|consen   85 SS--SLYFLFGTPYF---------HYDKATGYSVVWSKHRDTSVGIGYFIPDLTWIIVRYFVLG-GIEFVIHHIASLVFV  152 (281)
T ss_pred             hc--ccceeecCccc---------chhhhhccceeecceeeccccceEecccceeEEEEeeeec-CeeEEeeHHHHhhhh
Confidence            87  442222 1211         3444444433333332333  4499999975555444445 899999999885555


Q ss_pred             HHHhhcccchhhHHHHHHHhhcchhhhHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----cc
Q 023487          158 TLALYRNVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIR-----DA  232 (281)
Q Consensus       158 ~~~l~~~~~~~~~~~~Ll~ElSTPFlnlR~~L~~~g~~~~~S~~y~vNg~l~~~tFf~~Ri~~~~~~~~~~~~-----~~  232 (281)
                      ...+.++.+++|+...|++|+||||+|+||+++++|+  |+|++|++||++++++|++|||+..+++.+.++.     +.
T Consensus       153 ~~~~~~~~g~y~~~~~L~~ElSTPFvnlrw~L~~~~~--k~Sl~~~vNG~lm~~~F~v~RIll~~~~~~~~~~~~~~~~~  230 (281)
T KOG4561|consen  153 GCLLRRGVGQYYAGTFLMAELSTPFVNLRWFLDKAGQ--KKSLFYKVNGLLLLVVFFVARILLWPYMGWHYYWRYQGLVL  230 (281)
T ss_pred             eeeEecCccceeeeeeheeecCCceeeHHHHHHHcCc--ccchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            5555677889999999999999999999999999999  7899999999999999999999988888766662     23


Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCcccccc
Q 023487          233 SKFEKGIELPLALFGMAGMNLLNISLGIDLFNAFKREKNPQQTSYHR  279 (281)
Q Consensus       233 ~~~~~~~~~~l~~~~~~~l~vLNi~wF~ki~~g~~k~~~~~~~~~~~  279 (281)
                      .++|...+ .....+++.+++||++||+||.||++|..+++|++-..
T Consensus       231 ~~~~~~~~-~~~l~~~~~L~v~Nl~Wf~km~~ga~K~~~~~~~~~~~  276 (281)
T KOG4561|consen  231 NQVPPFLP-LFLLGLNALLLVLNLYWFSKMVRGALKVLKKAKTSPPA  276 (281)
T ss_pred             hhhchhHh-HHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcccCCChh
Confidence            45666554 25556799999999999999999999999999887543

>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices

Probab=100.00  E-value=2.3e-32  Score=235.44  Aligned_cols=194  Identities=24%  Similarity=0.251  Sum_probs=154.0

Q ss_pred             CceehhhHHHHHHHHHHHHHHHHHhhhhccCCCCCcccCCcccCCcchhhhhHHHHHHHHHHHHHHHHhhhhccCcchhH
Q 023487           67 LFVNTSVSLLHSTITSVSVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPGI  146 (281)
Q Consensus        67 ~W~nr~VS~vHAiv~~~~al~~l~~~~~~~~~~~~~~~~d~v~~~s~~~~~~~~iS~GYFl~Dl~~~l~~~~~~~~~~~~  146 (281)
                      ||+||++|++|+++++.++++++..   +|+..+.. ++++..++++..+...++++|||++|+++|+.+++..+..+++
T Consensus         1 ~~~~~~~s~~h~~~~~~~~~~~l~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~~~   76 (198)
T PF03798_consen    1 KWNNRVVSFVHAIVSSIWGLYILLN---DPELWSDW-PDDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFWEM   76 (198)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHhc---CcHHhhhc-ccCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHh
Confidence            7999999999999999999865554   22111111 2444455566777899999999999999999976554323799


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcchhhhHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 023487          147 LVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITI  226 (281)
Q Consensus       147 l~HH~~~l~~f~~~l~~~~~~~~~~~~Ll~ElSTPFlnlR~~L~~~g~~~~~S~~y~vNg~l~~~tFf~~Ri~~~~~~~~  226 (281)
                      ++||++++.++..+...+.+..++...+++|+||||+|+||+++..|.+.++++.+.+|++++.++|+++|++.+|+..+
T Consensus        77 ~~HH~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~~~~~~~~  156 (198)
T PF03798_consen   77 LLHHVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIVLFPYLIY  156 (198)
T ss_pred             hHHHHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887888888899999999999999999999994311367899999999999999999999999888


Q ss_pred             HHHhcccccccc---ch-hHHHHHHHHHHHHHHHHHHHHHHh
Q 023487          227 KLIRDASKFEKG---IE-LPLALFGMAGMNLLNISLGIDLFN  264 (281)
Q Consensus       227 ~~~~~~~~~~~~---~~-~~l~~~~~~~l~vLNi~wF~ki~~  264 (281)
                      +.+.+..+.+..   .+ ......++.++++||++||+||+|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ln~~W~~~i~r  198 (198)
T PF03798_consen  157 WVYWDVWPLPLWKVPWPVPWIFLVLLLVLFVLNIYWFYLILR  198 (198)
T ss_pred             HHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            888865432221   11 124445578889999999999987

Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane

>smart00724 TLC TRAM, LAG1 and CLN8 homology domains

Probab=100.00  E-value=3.9e-32  Score=237.36  Aligned_cols=197  Identities=26%  Similarity=0.300  Sum_probs=161.5

Q ss_pred             CCCCceehhhHHHHHHHHHHHHHHHHHhhhhccCCCCCcccCCcccCCcchhhhhHHHHHHHHHHHHHHHHhhhhcc-Cc
Q 023487           64 RDPLFVNTSVSLLHSTITSVSVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQYRLYS-GL  142 (281)
Q Consensus        64 k~~~W~nr~VS~vHAiv~~~~al~~l~~~~~~~~~~~~~~~~d~v~~~s~~~~~~~~iS~GYFl~Dl~~~l~~~~~~-~~  142 (281)
                      |+.||+||+||.+||++++..++...  ++..+   +.  .+++....++.++...++++|||++|+.+|+.+++.. ..
T Consensus         2 k~~e~~~~~vs~~hs~~~~~~~~~~~--~~~~~---~~--~~~p~~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d   74 (205)
T smart00724        2 KFNESSNRLVSYLHSVIAGLYALYSE--PWLSD---PK--SLYPIQGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKD   74 (205)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhccC--CcccC---Cc--ccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence            45599999999999999998776321  11111   11  2567788899999999999999999999999654322 22


Q ss_pred             chhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcchhhhHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHhhHH
Q 023487          143 IPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHL  222 (281)
Q Consensus       143 ~~~~l~HH~~~l~~f~~~l~~~~~~~~~~~~Ll~ElSTPFlnlR~~L~~~g~~~~~S~~y~vNg~l~~~tFf~~Ri~~~~  222 (281)
                      ++++++||++++.++..+...+....++...++.|+||||+|+||+++.+|+  ++++++.+|+++++++|+++|++.+|
T Consensus        75 ~~~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~--~~~~~~~~~~~~f~~~f~~~R~~~~p  152 (205)
T smart00724       75 FKEMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGR--KKSLLYDVNFVLFAVVFFVFRLILFP  152 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhcc--ccchhhhhHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999888888888888888999999999999999999998  67899999999999999999999999


Q ss_pred             HHHHHHHhccccccc-----cchhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 023487          223 LITIKLIRDASKFEK-----GIELPLALFGMAGMNLLNISLGIDLFNAFKREK  270 (281)
Q Consensus       223 ~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~l~vLNi~wF~ki~~g~~k~~  270 (281)
                      ++.++.+.+..+...     .. .......+.++.+||++||++|+|+..|..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ln~~Wf~~i~~~~~~~~  204 (205)
T smart00724      153 FLILTVTVHYAQAESGLFPPLL-YLLFLLLLLCLQLLNIYWFFLILRMARKLL  204 (205)
T ss_pred             HHHHHHHhhhhhhhcCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999998887554322     21 134455689999999999999999988764

Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.

>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.90  E-value=0.0002  Score=67.00  Aligned_cols=198  Identities=11%  Similarity=0.138  Sum_probs=116.2

Q ss_pred             CCceehhhHHHHHHHHHHHHHHHHHh-hhhccCCCCCcccCCcccCCcchhhhhHHHHHHHHHHHHHHHHhhhhccCcch
Q 023487           66 PLFVNTSVSLLHSTITSVSVVFIVVN-QWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQYRLYSGLIP  144 (281)
Q Consensus        66 ~~W~nr~VS~vHAiv~~~~al~~l~~-~~~~~~~~~~~~~~d~v~~~s~~~~~~~~iS~GYFl~Dl~~~l~~~~~~~~~~  144 (281)
                      +..+...=..+-=.++...+++++++ +|+.+. ..++ .+-|.....+.-...-.+=+|+-++-+..+..-...+- -+
T Consensus        87 ~k~~Es~Wk~~yy~~s~~~glyV~~~~~wf~~~-k~~w-~~yP~~~~~~~~k~~Y~~e~gfY~~~l~al~~d~~rkD-f~  163 (318)
T KOG1607|consen   87 KKFCESAWKFLYYLVSWIFGLYVMYHEPWFYDT-KSFW-EGYPDQTLPPSFKAYYLLEAGFYIQLLFALFLDEKRKD-FW  163 (318)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhhheecchhhcCH-HHHH-hcCCCCCCCHHHHHHHHHhhHHHHHHHHHHHhhccccH-HH
Confidence            35555555666667777777766665 555431 1232 12233333344444455667777776666654332222 36


Q ss_pred             hHHHHHHHHHHHHHHHhhcccchhhHHHH-HHHhhcchhhhHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHhhHHH
Q 023487          145 GILVHHLLLLVCFTLALYRNVTINYLILT-LICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLL  223 (281)
Q Consensus       145 ~~l~HH~~~l~~f~~~l~~~~~~~~~~~~-Ll~ElSTPFlnlR~~L~~~g~~~~~S~~y~vNg~l~~~tFf~~Ri~~~~~  223 (281)
                      ++++||++.+.-...+-.. .+.-.+... .+...|-+|+-..+.++-.+.  +  .+-...=+++...|+..|+...|.
T Consensus       164 ~m~vHHvvTl~Li~lSy~~-~f~R~G~lil~lhD~SD~~Le~~K~~nY~~~--~--~~~~~~F~~F~~~wi~~RL~~~p~  238 (318)
T KOG1607|consen  164 EMVVHHVVTLILISLSYVF-NFTRVGTLILALHDASDVFLELGKMLNYLQF--E--AIADFVFVLFAFSWIYTRLIYYPF  238 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHh-hhhcccceeeeeecchHHHHHHHHHHchhhH--H--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999998876654444322 222222222 347899999999988877765  2  233344457788899999887765


Q ss_pred             HHHHHHh--c--cccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 023487          224 ITIKLIR--D--ASKFEKGIELPLALFGMAGMNLLNISLGIDLFNAFKREKN  271 (281)
Q Consensus       224 ~~~~~~~--~--~~~~~~~~~~~l~~~~~~~l~vLNi~wF~ki~~g~~k~~~  271 (281)
                      ...+...  +  ..+.+..+.+++......++.+||++|++-|+|-..|..+
T Consensus       239 wil~st~~~~~~~~~~~~~~~~~~~~~lL~~Lqll~i~W~~lI~rm~~r~~~  290 (318)
T KOG1607|consen  239 WILRSTSREDFSLRQYQPKPSYYFFNCLLLALQLLHIYWFYLILRMAYRVIK  290 (318)
T ss_pred             HHHHHhHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4333222  1  1121222212344445788999999999999997766666

>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]

Probab=96.93  E-value=0.0062  Score=57.00  Aligned_cols=196  Identities=12%  Similarity=0.148  Sum_probs=101.2

Q ss_pred             CceehhhHHHHHHHHHHHHHHHHHh--hhhccCCCCCcccCCcccCCcchhhhhHHHHHHHHHHHHHHHHhh--hhccCc
Q 023487           67 LFVNTSVSLLHSTITSVSVVFIVVN--QWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQY--RLYSGL  142 (281)
Q Consensus        67 ~W~nr~VS~vHAiv~~~~al~~l~~--~~~~~~~~~~~~~~d~v~~~s~~~~~~~~iS~GYFl~Dl~~~l~~--~~~~~~  142 (281)
                      .++...-+...-.+++..+++++.+  .|+-+. ..++ .+-|+.+.++.-..---+=.||-+-.....+..  ++..- 
T Consensus       156 Rf~eq~y~~fyy~v~g~~Glyvmrss~~w~fnt-k~l~-etyp~~~~p~lfk~fYliqaafw~qQa~ilvLqlEkprkD-  232 (395)
T COG5058         156 RFCEQMYAIFYYGVSGPFGLYVMRSSPLWFFNT-KALY-ETYPVFYNPFLFKAFYLIQAAFWAQQACILVLQLEKPRKD-  232 (395)
T ss_pred             HHHHHHHHHHHhhccccceEEEEecCcchhhhh-HHHH-HhCccccCcHHHHHHHHHHHHHHHHHHhhheeeecchhhh-
Confidence            5666666666666666666644332  222110 1121 122333433333333334455555543332221  22222 


Q ss_pred             chhHHHHHHHHHHHHHHHhhcccchhhHH-HHHHHhhcchhhhHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHhhH
Q 023487          143 IPGILVHHLLLLVCFTLALYRNVTINYLI-LTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASH  221 (281)
Q Consensus       143 ~~~~l~HH~~~l~~f~~~l~~~~~~~~~~-~~Ll~ElSTPFlnlR~~L~~~g~~~~~S~~y~vNg~l~~~tFf~~Ri~~~  221 (281)
                      -+|++.||++.+.-...+-..... --++ ....+.+|-||+.+.+.+.-+|-    +..+-+-| .+...|+-.|-.+.
T Consensus       233 ~~elv~HHIVTllLI~lSY~fhft-r~GlAI~itmDvSD~~Ls~sK~lnYl~~----~l~~~iF~-iFv~~wIysRHyln  306 (395)
T COG5058         233 FKELVFHHIVTLLLIWLSYVFHFT-RMGLAIYITMDVSDFFLSLSKTLNYLNS----VLATFIFG-IFVFIWIYSRHYLN  306 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hccceEEEEEeccHHHHHHHHHHHHhhc----hhHHHHHH-HHHHHHHHHHHHHH
Confidence            368999998876554443321111 1111 12348999999999999988873    34454444 45666777773332


Q ss_pred             HHHHHHHHhcc---ccccc---------cchhHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 023487          222 LLITIKLIRDA---SKFEK---------GIELPLALFGMAGMNLLNISLGIDLFNAFKREKN  271 (281)
Q Consensus       222 ~~~~~~~~~~~---~~~~~---------~~~~~l~~~~~~~l~vLNi~wF~ki~~g~~k~~~  271 (281)
                      .=+.+-+....   .+++.         -+.+++.++...++..+|++|+.-|+|-.+|...
T Consensus       307 ~kIlw~vlt~~r~~g~~~L~va~~qykcwisl~i~~iLl~aLQlvniyWl~lIvRvayRv~~  368 (395)
T COG5058         307 LKILWSVLTAFRTIGNFVLDVATQQYKCWISLPIVFILLQALQLVNIYWLFLIVRVAYRVIW  368 (395)
T ss_pred             HHHHHHHHhchhhcCceeeEeechhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22212222211   11111         1112345556788999999999999996555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00