Citrus Sinensis ID: 023497
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 281 | ||||||
| 255560932 | 306 | aldose 1-epimerase, putative [Ricinus co | 1.0 | 0.918 | 0.784 | 1e-135 | |
| 255560928 | 305 | aldose 1-epimerase, putative [Ricinus co | 0.992 | 0.914 | 0.779 | 1e-133 | |
| 224055575 | 306 | predicted protein [Populus trichocarpa] | 1.0 | 0.918 | 0.758 | 1e-133 | |
| 225452318 | 306 | PREDICTED: putative glucose-6-phosphate | 0.996 | 0.915 | 0.763 | 1e-131 | |
| 297811575 | 306 | aldose 1-epimerase family protein [Arabi | 0.992 | 0.911 | 0.726 | 1e-126 | |
| 18417396 | 306 | aldose 1-epimerase family protein [Arabi | 0.992 | 0.911 | 0.723 | 1e-126 | |
| 297832784 | 306 | aldose 1-epimerase family protein [Arabi | 0.992 | 0.911 | 0.730 | 1e-126 | |
| 28393808 | 306 | unknown protein [Arabidopsis thaliana] | 0.992 | 0.911 | 0.720 | 1e-125 | |
| 18395868 | 306 | glucose-6-phosphate 1-epimerase [Arabido | 0.992 | 0.911 | 0.730 | 1e-125 | |
| 7573475 | 381 | putative protein [Arabidopsis thaliana] | 0.992 | 0.732 | 0.721 | 1e-125 |
| >gi|255560932|ref|XP_002521479.1| aldose 1-epimerase, putative [Ricinus communis] gi|223539378|gb|EEF40969.1| aldose 1-epimerase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust.
Identities = 240/306 (78%), Positives = 255/306 (83%), Gaps = 25/306 (8%)
Query: 1 MPLNIVHDKDGLPRIILTEPTGSSAE-------------------------SFWKPPKAI 35
MPLNIV+D DGLP+IILTEPTGSSAE + K PKAI
Sbjct: 1 MPLNIVNDVDGLPKIILTEPTGSSAEVLLYGGQVVSWKNERREELLFMSTKAVLKAPKAI 60
Query: 36 RGGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAW 95
RGGIPVCFPQFGNLG LEQHGFARN+ WSLD D PLPP NNQS+VDLILKSTEED+K W
Sbjct: 61 RGGIPVCFPQFGNLGSLEQHGFARNKLWSLDSDPLPLPPVNNQSSVDLILKSTEEDLKTW 120
Query: 96 PRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISEVRVEGLETLDYF 155
PR FELRLRISISPGKLTLIPRVRN DNKAFSF FAL NYLSVSDISEVR+EGLETLDYF
Sbjct: 121 PRSFELRLRISISPGKLTLIPRVRNTDNKAFSFTFALCNYLSVSDISEVRIEGLETLDYF 180
Query: 156 DYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPW 215
D LM +ERFTEQADAITFD EIDR+YLSTPTKIAIIDHEKKRTF LRKDG+PD+VVWNPW
Sbjct: 181 DNLMQRERFTEQADAITFDAEIDRIYLSTPTKIAIIDHEKKRTFVLRKDGLPDAVVWNPW 240
Query: 216 DKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELSTVSSSYCSGQLDPRR 275
DKKAKAL D+G D YKTMLCVDSAAIE PIVLKPFEEW+G QELSTVSSSYCSGQLDP +
Sbjct: 241 DKKAKALQDLGDDDYKTMLCVDSAAIETPIVLKPFEEWKGHQELSTVSSSYCSGQLDPGK 300
Query: 276 VLHGFH 281
VL+GF
Sbjct: 301 VLYGFQ 306
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255560928|ref|XP_002521477.1| aldose 1-epimerase, putative [Ricinus communis] gi|223539376|gb|EEF40967.1| aldose 1-epimerase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|224055575|ref|XP_002298547.1| predicted protein [Populus trichocarpa] gi|222845805|gb|EEE83352.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|225452318|ref|XP_002272928.1| PREDICTED: putative glucose-6-phosphate 1-epimerase [Vitis vinifera] gi|296087598|emb|CBI34854.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297811575|ref|XP_002873671.1| aldose 1-epimerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319508|gb|EFH49930.1| aldose 1-epimerase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|18417396|ref|NP_568301.1| aldose 1-epimerase family protein [Arabidopsis thaliana] gi|58743290|gb|AAW81723.1| At5g14500 [Arabidopsis thaliana] gi|108385311|gb|ABF85771.1| At5g14500 [Arabidopsis thaliana] gi|332004658|gb|AED92041.1| aldose 1-epimerase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297832784|ref|XP_002884274.1| aldose 1-epimerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297330114|gb|EFH60533.1| aldose 1-epimerase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|28393808|gb|AAO42313.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|18395868|ref|NP_566143.1| glucose-6-phosphate 1-epimerase [Arabidopsis thaliana] gi|30678376|ref|NP_850493.1| glucose-6-phosphate 1-epimerase [Arabidopsis thaliana] gi|6016717|gb|AAF01543.1|AC009325_13 unknown protein [Arabidopsis thaliana] gi|15810277|gb|AAL07026.1| unknown protein [Arabidopsis thaliana] gi|20258973|gb|AAM14202.1| unknown protein [Arabidopsis thaliana] gi|21593681|gb|AAM65648.1| unknown [Arabidopsis thaliana] gi|332640171|gb|AEE73692.1| glucose-6-phosphate 1-epimerase [Arabidopsis thaliana] gi|332640172|gb|AEE73693.1| glucose-6-phosphate 1-epimerase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|7573475|emb|CAB87789.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 281 | ||||||
| TAIR|locus:2145748 | 306 | AT5G14500 [Arabidopsis thalian | 0.911 | 0.836 | 0.792 | 7.5e-120 | |
| TAIR|locus:2084233 | 306 | AT3G01590 [Arabidopsis thalian | 0.911 | 0.836 | 0.800 | 1.5e-119 | |
| TAIR|locus:2165580 | 312 | AT5G57330 [Arabidopsis thalian | 0.903 | 0.814 | 0.643 | 2.4e-91 | |
| TAIR|locus:2082842 | 317 | AT3G61610 [Arabidopsis thalian | 0.889 | 0.788 | 0.561 | 2.5e-81 | |
| TAIR|locus:2128519 | 306 | AT4G23730 [Arabidopsis thalian | 0.864 | 0.794 | 0.574 | 1.4e-78 | |
| TAIR|locus:2117572 | 318 | AT4G25900 [Arabidopsis thalian | 0.846 | 0.748 | 0.489 | 4.2e-65 | |
| ASPGD|ASPL0000045178 | 315 | AN10222 [Emericella nidulans ( | 0.800 | 0.714 | 0.379 | 1.1e-34 | |
| UNIPROTKB|Q9KQJ7 | 296 | VC_2001 "Putative uncharacteri | 0.775 | 0.736 | 0.365 | 3.7e-32 | |
| TIGR_CMR|VC_2001 | 296 | VC_2001 "conserved hypothetica | 0.775 | 0.736 | 0.365 | 3.7e-32 | |
| UNIPROTKB|G4N684 | 326 | MGG_08597 "Uncharacterized pro | 0.736 | 0.634 | 0.318 | 5.3e-30 |
| TAIR|locus:2145748 AT5G14500 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1104 (393.7 bits), Expect = 7.5e-120, Sum P(2) = 7.5e-120
Identities = 203/256 (79%), Positives = 229/256 (89%)
Query: 24 SAESFWKPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDL 83
S ++ KPPKAIRGG+P+ FPQFGN G LE+HGFARNRFWSLD D SPLPPAN QSTVDL
Sbjct: 49 STKAQLKPPKAIRGGLPISFPQFGNFGALERHGFARNRFWSLDNDPSPLPPANQQSTVDL 108
Query: 84 ILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISE 143
+LKSTE+D+K WP FELR+RISISPGKLT+IPRVRN D KAFSFMF+LRNYL VSDISE
Sbjct: 109 VLKSTEDDLKIWPHSFELRVRISISPGKLTIIPRVRNTDTKAFSFMFSLRNYLYVSDISE 168
Query: 144 VRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRK 203
VRVEGLETLDY D LM +ERFTEQADAITFDGE+D+VYL+TPTKIAIIDHE+KRT ELRK
Sbjct: 169 VRVEGLETLDYLDNLMRRERFTEQADAITFDGEVDKVYLNTPTKIAIIDHERKRTIELRK 228
Query: 204 DGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELSTVS 263
+GMP++ VWNPWDKKAK++ DMG + Y TMLCVDS AIE+PIVLKP EEW+GRQELS VS
Sbjct: 229 EGMPNAAVWNPWDKKAKSIADMGDEDYTTMLCVDSGAIESPIVLKPHEEWKGRQELSIVS 288
Query: 264 SSYCSGQLDPRRVLHG 279
SSYCSGQLDPR+VL+G
Sbjct: 289 SSYCSGQLDPRKVLYG 304
|
|
| TAIR|locus:2084233 AT3G01590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2165580 AT5G57330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2082842 AT3G61610 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2128519 AT4G23730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2117572 AT4G25900 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000045178 AN10222 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9KQJ7 VC_2001 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
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| TIGR_CMR|VC_2001 VC_2001 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
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| UNIPROTKB|G4N684 MGG_08597 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| fgenesh4_pm.C_LG_I000875 | hypothetical protein (306 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
| gw1.VIII.2574.1 | • | 0.899 | |||||||||
| gw1.II.3030.1 | • | 0.899 | |||||||||
| fgenesh4_pm.C_LG_I000617 | • | 0.899 | |||||||||
| fgenesh4_pg.C_LG_VII001238 | • | 0.899 | |||||||||
| fgenesh4_pg.C_LG_IX001086 | • | 0.899 | |||||||||
| eugene3.00121193 | • | 0.899 | |||||||||
| estExt_fgenesh4_pm.C_LG_VIII0571 | • | 0.899 | |||||||||
| estExt_fgenesh4_pg.C_LG_XVIII0751 | • | 0.899 | |||||||||
| estExt_fgenesh4_pg.C_LG_XV1054 | • | 0.899 | |||||||||
| estExt_fgenesh4_pg.C_LG_X0989 | • | 0.899 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 281 | |||
| cd09020 | 269 | cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate | 1e-102 | |
| pfam01263 | 301 | pfam01263, Aldose_epim, Aldose 1-epimerase | 3e-50 | |
| COG0676 | 287 | COG0676, COG0676, Uncharacterized enzymes related | 4e-50 | |
| cd09025 | 271 | cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, | 1e-23 | |
| cd09024 | 288 | cd09024, Aldose_epim_lacX, Aldose 1-epimerase, sim | 7e-07 | |
| cd01081 | 284 | cd01081, Aldose_epim, aldose 1-epimerase superfami | 0.002 |
| >gnl|CDD|185697 cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like | Back alignment and domain information |
|---|
Score = 297 bits (764), Expect = e-102
Identities = 106/241 (43%), Positives = 133/241 (55%), Gaps = 9/241 (3%)
Query: 23 SSAESFWKPPKAIRGGIPVCFPQFGNLG---LLEQHGFARNRFWSLDEDASPLPPANNQS 79
S F KAIRGGIPVC+P FG G L HGFAR R W L E + +
Sbjct: 35 SPQAPF-DGGKAIRGGIPVCWPWFGPHGPNADLPAHGFARTRLWELLEVSED----EDGV 89
Query: 80 TVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVS 139
TV L L T+E WP FELRL +++ L L V N +K FSF AL Y VS
Sbjct: 90 TVSLELDDTDETRAIWPHAFELRLTVTLGFDTLELELTVTNTGDKPFSFTAALHTYFRVS 149
Query: 140 DISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTF 199
DI +VRVEGLE Y D L ++ Q A+TFDGE+DRVYL+TP + I D R
Sbjct: 150 DIEQVRVEGLEGATYLDKLTDQRE-KVQGGAVTFDGEVDRVYLNTPAPLTIDDPAWGRRI 208
Query: 200 ELRKDGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQEL 259
+ K G P +VVWNPW +KA + D DGY+ M+CV++A + +P+ L P E Q +
Sbjct: 209 RIEKSGSPSAVVWNPWIEKAARMADFPDDGYRRMVCVEAANVADPVTLAPGESHTLSQTI 268
Query: 260 S 260
S
Sbjct: 269 S 269
|
D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P. Length = 269 |
| >gnl|CDD|216397 pfam01263, Aldose_epim, Aldose 1-epimerase | Back alignment and domain information |
|---|
| >gnl|CDD|223748 COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|185702 cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, similar to Synechocystis Slr1438 | Back alignment and domain information |
|---|
| >gnl|CDD|185701 cd09024, Aldose_epim_lacX, Aldose 1-epimerase, similar to Lactococcus lactis lacX | Back alignment and domain information |
|---|
| >gnl|CDD|185695 cd01081, Aldose_epim, aldose 1-epimerase superfamily | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 281 | |||
| KOG1594 | 305 | consensus Uncharacterized enzymes related to aldos | 100.0 | |
| cd09020 | 269 | D-hex-6-P-epi_like D-hexose-6-phosphate epimerase- | 100.0 | |
| COG0676 | 287 | Uncharacterized enzymes related to aldose 1-epimer | 100.0 | |
| cd09025 | 271 | Aldose_epim_Slr1438 Aldose 1-epimerase, similar to | 100.0 | |
| cd09021 | 273 | Aldose_epim_Ec_YphB aldose 1-epimerase, similar to | 100.0 | |
| cd09024 | 288 | Aldose_epim_lacX Aldose 1-epimerase, similar to La | 100.0 | |
| cd01081 | 284 | Aldose_epim aldose 1-epimerase superfamily. Aldose | 100.0 | |
| PF01263 | 300 | Aldose_epim: Aldose 1-epimerase; InterPro: IPR0081 | 100.0 | |
| cd09022 | 284 | Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to | 99.98 | |
| PRK15172 | 300 | putative aldose-1-epimerase; Provisional | 99.97 | |
| COG2017 | 308 | GalM Galactose mutarotase and related enzymes [Car | 99.96 | |
| cd09019 | 326 | galactose_mutarotase_like galactose mutarotase_lik | 99.95 | |
| PLN00194 | 337 | aldose 1-epimerase; Provisional | 99.93 | |
| TIGR02636 | 335 | galM_Leloir galactose mutarotase. Members of this | 99.9 | |
| PRK11055 | 342 | galM galactose-1-epimerase; Provisional | 99.87 | |
| PTZ00485 | 376 | aldolase 1-epimerase; Provisional | 99.81 | |
| cd09023 | 284 | Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar t | 99.77 | |
| KOG1604 | 353 | consensus Predicted mutarotase [Carbohydrate trans | 99.46 | |
| cd09269 | 293 | deoxyribose_mutarotase deoxyribose mutarotase_like | 99.22 | |
| PF14486 | 302 | DUF4432: Domain of unknown function (DUF4432); PDB | 98.82 | |
| PF14315 | 274 | DUF4380: Domain of unknown function (DUF4380) | 88.63 | |
| PF09095 | 278 | DUF1926: Domain of unknown function (DUF1926); Int | 86.64 | |
| COG0832 | 106 | UreB Urea amidohydrolase (urease) beta subunit [Am | 84.38 | |
| PF00699 | 100 | Urease_beta: Urease beta subunit CAUTION: The Pros | 82.94 | |
| TIGR00192 | 101 | urease_beta urease, beta subunit. In a number of s | 82.76 | |
| cd00407 | 101 | Urease_beta Urease beta-subunit; Urease is a nicke | 82.54 | |
| PRK13203 | 102 | ureB urease subunit beta; Reviewed | 82.43 |
| >KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-71 Score=473.71 Aligned_cols=269 Identities=66% Similarity=1.172 Sum_probs=255.5
Q ss_pred CCeeEecCCCCCcEEEEECCCcceEEE-------------------------EecCCCCCcCCcceEccccCCCCCCccc
Q 023497 1 MPLNIVHDKDGLPRIILTEPTGSSAES-------------------------FWKPPKAIRGGIPVCFPQFGNLGLLEQH 55 (281)
Q Consensus 1 ~~~~~~~~~~~l~~~~l~~~~g~~~~v-------------------------~~~~~~~irgGiPv~fP~~G~~~~~p~H 55 (281)
|++...++.+|+..|+|++|.|++|+| .|++.+|||||||+|||+||..+.+++|
T Consensus 12 ~~~~~~k~~~g~~~ivL~~p~g~taev~L~Gg~V~SWK~~~geElLf~S~kA~f~ppKpIRGGIP~~FPQFG~~g~l~qH 91 (305)
T KOG1594|consen 12 MPVELAKGRNGLDKIVLTDPRGSTAEVYLYGGQVVSWKNENGEELLFVSTKAIFKPPKPIRGGIPICFPQFGNFGSLPQH 91 (305)
T ss_pred ccceeecccCCCceEEEeCCCCCeEEEEEeccEEEEeecCCCceeEEechhhhcCCCCcccCCcceEeeccCCCCccccc
Confidence 678889999999999999999999998 6799999999999999999999999999
Q ss_pred eeeeccCeEEeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEEeCCeeEEEEEEEeCCCCceeeeecCcce
Q 023497 56 GFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNY 135 (281)
Q Consensus 56 GfaR~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpY 135 (281)
||||++.|+++....+++ ......|.|.|.+++++++.|||+|++++++.|.++.|+++..|+|++++||.|++++|+|
T Consensus 92 GFaRn~~W~v~~~p~~lp-~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~g~Lt~~~rV~Ntd~KpFsF~~alHtY 170 (305)
T KOG1594|consen 92 GFARNRFWEVENNPPPLP-SLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGDGELTLTSRVRNTDSKPFSFSFALHTY 170 (305)
T ss_pred ccccceeeEeccCCCCCC-cCCceeEEEEecCChhhhhhCCcceEEEEEEEEcCCceEEEEEeecCCCCceEEEeEeeee
Confidence 999999999997754333 2245789999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCeeEEEcCCCCccccccCccccccccCceEEeccCcceEEcCCCCeEEEEeCCCCcEEEEEecCCCcEEEeCCc
Q 023497 136 LSVSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPW 215 (281)
Q Consensus 136 F~v~~~~~~~v~gl~~~~~~d~l~~~~~~~~~~~~l~~~~~~D~vy~~~~~~~~l~~~~~~~~i~i~~~~~~~~vvwnP~ 215 (281)
|+++|++.++|+||+++.|+|++...+.++++.++++|.+++||||+++|.++.|.|..++|+|.|.+.|+|++||||||
T Consensus 171 f~vsdisevrveGL~tldylD~~~~~~~~tE~~davTF~~e~DrvYl~tp~e~aI~dh~~krti~l~k~g~pDaVVWNPW 250 (305)
T KOG1594|consen 171 FRVSDISEVRVEGLETLDYLDNLKNRERFTEQRDAVTFNSEVDRVYLNTPTELAIFDHEKKRTIVLKKEGLPDAVVWNPW 250 (305)
T ss_pred EeecccceEEEeccccccccccccchhhccccCceEeeccceeeEEecCCceEEEEEeccccEEEEeccCCCceEEeChh
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCcceEEecccccCCCeEeCCCCEEEEEEEEEEEecccccCC
Q 023497 216 DKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELSTVSSSYCSGQ 270 (281)
Q Consensus 216 ~~~~~~~~d~~~~~~~~~vCvEp~~~~~~~~L~pge~~~~~~~i~~~~~~~~~~~ 270 (281)
.++++.|+||++++|++|+|||++.+..+++|+||++|++++.+++.+.+|||||
T Consensus 251 ~kksk~maD~gde~Y~~mlCVe~a~v~~pI~L~PG~eW~g~q~Lsiv~s~~~s~q 305 (305)
T KOG1594|consen 251 DKKSKTMADFGDEDYKHMLCVESAAVESPITLKPGEEWKGRQLLSIVPSSYCSGQ 305 (305)
T ss_pred HhhhhhhhhccccccceeEEecccccCCceeecCCccceeEEEEEEeecccccCC
Confidence 9999999999999999999999999999999999999999999999999999997
|
|
| >cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like | Back alignment and domain information |
|---|
| >COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438 | Back alignment and domain information |
|---|
| >cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB | Back alignment and domain information |
|---|
| >cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX | Back alignment and domain information |
|---|
| >cd01081 Aldose_epim aldose 1-epimerase superfamily | Back alignment and domain information |
|---|
| >PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5 | Back alignment and domain information |
|---|
| >cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR | Back alignment and domain information |
|---|
| >PRK15172 putative aldose-1-epimerase; Provisional | Back alignment and domain information |
|---|
| >COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >cd09019 galactose_mutarotase_like galactose mutarotase_like | Back alignment and domain information |
|---|
| >PLN00194 aldose 1-epimerase; Provisional | Back alignment and domain information |
|---|
| >TIGR02636 galM_Leloir galactose mutarotase | Back alignment and domain information |
|---|
| >PRK11055 galM galactose-1-epimerase; Provisional | Back alignment and domain information |
|---|
| >PTZ00485 aldolase 1-epimerase; Provisional | Back alignment and domain information |
|---|
| >cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013 | Back alignment and domain information |
|---|
| >KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like | Back alignment and domain information |
|---|
| >PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A | Back alignment and domain information |
|---|
| >PF14315 DUF4380: Domain of unknown function (DUF4380) | Back alignment and domain information |
|---|
| >PF09095 DUF1926: Domain of unknown function (DUF1926); InterPro: IPR015179 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals | Back alignment and domain information |
|---|
| >COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3 | Back alignment and domain information |
|---|
| >TIGR00192 urease_beta urease, beta subunit | Back alignment and domain information |
|---|
| >cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide | Back alignment and domain information |
|---|
| >PRK13203 ureB urease subunit beta; Reviewed | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 281 | ||||
| 2cir_A | 297 | Structure-Based Functional Annotation: Yeast Ymr099 | 2e-26 | ||
| 2ciq_A | 297 | Structure-Based Functional Annotation: Yeast Ymr099 | 2e-26 | ||
| 2hta_A | 309 | Crystal Structure Of A Putative Mutarotase (Yead) F | 4e-20 | ||
| 1jov_A | 270 | Crystal Structure Analysis Of Hi1317 Length = 270 | 3e-15 | ||
| 3k25_A | 289 | Crystal Structure Of Slr1438 Protein From Synechocy | 1e-07 |
| >pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes For A D-Hexose-6-Phosphate Mutarotase. Complex With Glucose-6-Phosphate Length = 297 | Back alignment and structure |
|
| >pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes For A D-Hexose-6-Phosphate Mutarotase Length = 297 | Back alignment and structure |
| >pdb|2HTA|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From Salmonella Typhimurium In Orthorhombic Form Length = 309 | Back alignment and structure |
| >pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317 Length = 270 | Back alignment and structure |
| >pdb|3K25|A Chain A, Crystal Structure Of Slr1438 Protein From Synechocystis Sp. Pcc 6803, Northeast Structural Genomics Consortium Target Sgr112 Length = 289 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 281 | |||
| 2cir_A | 297 | Hexose-6-phosphate mutarotase; hypothetical protei | 7e-83 | |
| 2hta_A | 309 | Putative enzyme related to aldose 1-epimerase; car | 4e-76 | |
| 3k25_A | 289 | SLR1438 protein; structural genomics, PSI-2, prote | 4e-62 | |
| 1jov_A | 270 | HI1317; hypothetical protein, structure 2 function | 3e-60 | |
| 3dcd_A | 307 | Galactose mutarotase related enzyme; Q5FKD7 LAR33 | 9e-31 | |
| 3q1n_A | 294 | Galactose mutarotase related enzyme; structural ge | 9e-29 | |
| 3os7_A | 341 | Galactose mutarotase-like protein; structural geno | 3e-11 | |
| 3nre_A | 291 | Aldose 1-epimerase; structural genomics, joint cen | 1e-09 | |
| 3mwx_A | 326 | Aldose 1-epimerase; structural genomics, joint cen | 4e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-04 |
| >2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Length = 297 | Back alignment and structure |
|---|
Score = 250 bits (639), Expect = 7e-83
Identities = 74/259 (28%), Positives = 113/259 (43%), Gaps = 18/259 (6%)
Query: 24 SAESFWKPPKAIRGGIPVCFPQFGNL------GLLEQHGFARNRFWSLDEDASPLPPANN 77
S + K +RGGIP+ FP FG L QHG ARN W N
Sbjct: 45 STAAKLDGSKPVRGGIPLVFPVFGKNSTDEHLSKLPQHGLARNSTWEFLGQ-----TKEN 99
Query: 78 QSTVDLILK---STEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVD-NKAFSFMFALR 133
TV LK + E K WP + L L + + L V N +K F +
Sbjct: 100 PPTVQFGLKPEIANPELTKLWPMDYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFH 159
Query: 134 NYLSVSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDH 193
Y + DI V L + +D L KE + ++ +TF+ E D +Y + + AI
Sbjct: 160 TYFRIEDIEGTMVSNLAGMKLYDQL-LKESYVDKHPVVTFNQETDVIYQNVSAERAIQIV 218
Query: 194 E-KKRTFELRKDGMPDSVVWNPWDKKAKALPDMG-VDGYKTMLCVDSAAIENPIVLKPFE 251
+ + L++ +PD+VVWNPW +K++ + D GY+ M+C++ + + I L P +
Sbjct: 219 DKGVQIHTLKRYNLPDTVVWNPWIEKSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGK 278
Query: 252 EWRGRQELSTVSSSYCSGQ 270
+W Q L Y + Q
Sbjct: 279 KWNAYQLLCKEELKYQAIQ 297
|
| >2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Length = 309 | Back alignment and structure |
|---|
| >3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Length = 289 | Back alignment and structure |
|---|
| >1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Length = 270 | Back alignment and structure |
|---|
| >3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Length = 307 | Back alignment and structure |
|---|
| >3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Length = 294 | Back alignment and structure |
|---|
| >3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Length = 341 | Back alignment and structure |
|---|
| >3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Length = 291 | Back alignment and structure |
|---|
| >3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Length = 326 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 281 | |||
| 1jov_A | 270 | HI1317; hypothetical protein, structure 2 function | 100.0 | |
| 2cir_A | 297 | Hexose-6-phosphate mutarotase; hypothetical protei | 100.0 | |
| 2hta_A | 309 | Putative enzyme related to aldose 1-epimerase; car | 100.0 | |
| 3k25_A | 289 | SLR1438 protein; structural genomics, PSI-2, prote | 100.0 | |
| 3dcd_A | 307 | Galactose mutarotase related enzyme; Q5FKD7 LAR33 | 100.0 | |
| 3q1n_A | 294 | Galactose mutarotase related enzyme; structural ge | 100.0 | |
| 3mwx_A | 326 | Aldose 1-epimerase; structural genomics, joint cen | 100.0 | |
| 3os7_A | 341 | Galactose mutarotase-like protein; structural geno | 100.0 | |
| 3nre_A | 291 | Aldose 1-epimerase; structural genomics, joint cen | 100.0 | |
| 1yga_A | 342 | Hypothetical 37.9 kDa protein in BIO3-HXT17 interg | 100.0 | |
| 1snz_A | 344 | Aldose 1-epimerase; mutarotase, galactosemia, isom | 100.0 | |
| 1lur_A | 339 | Aldose 1-epimerase; vitamin B12, methyltransferase | 99.96 | |
| 1nsx_A | 347 | Galactose mutarotase; epimerase, galactose metabol | 99.96 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.95 | |
| 3imh_A | 338 | Galactose-1-epimerase; structural genomics, PSI-2, | 99.94 | |
| 3ty1_A | 384 | Hypothetical aldose 1-epimerase; supersandwich, st | 99.83 | |
| 4ep8_B | 101 | Urease subunit beta; alpha-beta barrel, nickel met | 86.01 | |
| 4ubp_B | 126 | Protein (urease (chain B)); bacillus pasteurii, ni | 80.63 | |
| 4ac7_B | 126 | Urease subunit beta; hydrolase, bacillus pasteurii | 80.63 |
| >1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=347.79 Aligned_cols=226 Identities=27% Similarity=0.477 Sum_probs=190.2
Q ss_pred CCCCcEEEEECCCcceEEE--------------------------EecCCCCCcCCcceEccccCCCCCCccceeeeccC
Q 023497 9 KDGLPRIILTEPTGSSAES--------------------------FWKPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRF 62 (281)
Q Consensus 9 ~~~l~~~~l~~~~g~~~~v--------------------------~~~~~~~irgGiPv~fP~~G~~~~~p~HGfaR~~~ 62 (281)
.+|++.++|+++.+ +|+| .|++.++||||+||||||||++ .+|+|||||++.
T Consensus 18 ~~~~~~~~l~~~~~-~a~i~~~Ga~l~s~~~~~~g~e~Lw~~~~~~~~~~~~irGGiPvlfP~~gr~-~~~~HGfaR~~~ 95 (270)
T 1jov_A 18 HNDIPVLHLKHAVG-TAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWFGGV-KQPAHGTARIRL 95 (270)
T ss_dssp ETTEEEEEEEETTE-EEEEETBTTEEEEEEETTCSSCSBCBCTTCCCCTTSCCSBSCCEEBSSCGGG-SSSTTBSGGGSB
T ss_pred eCCceEEEEeCCCc-EEEEECCCCEEEEEEECCCCceEEEECcHHhcCCCCCccCccEEEEeccCCC-CCCCCceecCCC
Confidence 68889999998875 5777 3577789999999999999995 579999999999
Q ss_pred eEEeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEEeCCeeEEEEEEEeCCCCceeeeecCcceeecCCCC
Q 023497 63 WSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDIS 142 (281)
Q Consensus 63 W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~v~~~~ 142 (281)
|+|++... +++...++|.|.+++ +.|+++++|+|. |+++++|+|+|++ ||++|+||||++++++
T Consensus 96 W~v~~~~~----~~~~v~l~~~l~~~~-------~~f~l~~~~~L~---l~~~~~v~N~g~~--p~~~g~HpyF~v~d~~ 159 (270)
T 1jov_A 96 WQLSHYYI----SVHKVRLEFELFSDL-------NIIEAKVSMVFT---DKCHLTFTHYGEE--SAQAALHTYFNIGDIN 159 (270)
T ss_dssp CEEEEEEE----ETTEEEEEEEEECTT-------SCEEEEEEEEES---SSEEEEEEECCSS--CEEEEECCEEECSCGG
T ss_pred cEEeeecc----CCCcEEEEEEECCCc-------cccEEEEEEEEC---CeEEEEEEeCCch--hHhhhcccceecCCcc
Confidence 99997631 123456788887643 358999999995 8999999999986 6899999999999988
Q ss_pred eeEEEcCCCCccccccCccccccccCceEEeccCcceEEcCCCCeEEEEeCCCCcEEEEEecCCCcEEEeCCcccccccC
Q 023497 143 EVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKAL 222 (281)
Q Consensus 143 ~~~v~gl~~~~~~d~l~~~~~~~~~~~~l~~~~~~D~vy~~~~~~~~l~~~~~~~~i~i~~~~~~~~vvwnP~~~~~~~~ 222 (281)
+++|.|+.+ .|+|+++..... ..+.+.+++++|++|.++++.++|.+++.+++|+|++++++++||||||. ++|
T Consensus 160 ~~~v~g~~~-~~~d~l~~~~~~--~~~~~~~~~~~D~vy~~~~~~~~i~d~~~~~~i~v~~~~~~~~vvWnP~~---~~~ 233 (270)
T 1jov_A 160 QVEVQGLPE-TCFNSLNQQQEN--VPSPRHISENVDCIYSAENMQNQILDKSFNRTIALHHHNASQFVLWNPWH---KKT 233 (270)
T ss_dssp GEEEESCCS-EEEETTTTEEEE--CCSSBCCSSCEEEEEECSSSEEEEEETTTTEEEEEEEESCSEEEEEECTT---SCC
T ss_pred eEEEECCCC-cceeccCCcccc--cCCcccCCCCccceeCCCCCCEEEEECCCCcEEEEEEcCCCeEEEECCCc---ccc
Confidence 999999954 788887653322 33467888899999998878899999999999999999999999999984 469
Q ss_pred CCCCCCCCcceEEecccccCCCeEeCCCCEEEEEEEEE
Q 023497 223 PDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELS 260 (281)
Q Consensus 223 ~d~~~~~~~~~vCvEp~~~~~~~~L~pge~~~~~~~i~ 260 (281)
.||++++|++||||||+++ .+.|+|||+++.+++|+
T Consensus 234 ~d~~~~~~~~fvCvEp~~~--~~~L~PGe~~~~~~~i~ 269 (270)
T 1jov_A 234 SGMSETGYQKMLCLETARI--HHLLEFGESLSVEISLK 269 (270)
T ss_dssp TTCCTTGGGGEEEEEEEEE--EEEECTTCEEEEEEEEC
T ss_pred cccccccCccEEEeCcccc--ceEECCCCEEEEEEEEE
Confidence 9999999999999999875 57999999998888774
|
| >2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* | Back alignment and structure |
|---|
| >2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A | Back alignment and structure |
|---|
| >3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} | Back alignment and structure |
|---|
| >3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
| >3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} | Back alignment and structure |
|---|
| >3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
| >3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} | Back alignment and structure |
|---|
| >1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A* | Back alignment and structure |
|---|
| >1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4 | Back alignment and structure |
|---|
| >1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A* | Back alignment and structure |
|---|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
| >3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
| >3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
| >4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ... | Back alignment and structure |
|---|
| >4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B* | Back alignment and structure |
|---|
| >4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 281 | ||||
| d1jova_ | 269 | b.30.5.7 (A:) Hypothetical protein HI1317 {Haemoph | 8e-61 |
| >d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Length = 269 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Supersandwich superfamily: Galactose mutarotase-like family: Hypothetical protein HI1317 domain: Hypothetical protein HI1317 species: Haemophilus influenzae [TaxId: 727]
Score = 191 bits (487), Expect = 8e-61
Identities = 57/236 (24%), Positives = 93/236 (39%), Gaps = 25/236 (10%)
Query: 24 SAESFWKPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDL 83
S +K AIRGG+P+C+P FG + HG AR R W L + +
Sbjct: 58 SEVEPFKNGNAIRGGVPICYPWFGGVKQ-PAHGTARIRLWQLSH-----------YYISV 105
Query: 84 ILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISE 143
E ++ + E ++ + T + S AL Y ++ DI++
Sbjct: 106 HKVRLEFELFSDLNIIEAKVSM-----VFTDKCHLTFTHYGEESAQAALHTYFNIGDINQ 160
Query: 144 VRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRK 203
V V+GL + +E +D +Y + + I+D RT L
Sbjct: 161 VEVQGLPETCFNSLNQQQE---NVPSPRHISENVDCIYSAENMQNQILDKSFNRTIALHH 217
Query: 204 DGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQEL 259
V+WNPW KK + + GY+ MLC+++A I + +L+ E L
Sbjct: 218 HNASQFVLWNPWHKKTSGMSE---TGYQKMLCLETARIHH--LLEFGESLSVEISL 268
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 281 | |||
| d1jova_ | 269 | Hypothetical protein HI1317 {Haemophilus influenza | 100.0 | |
| d1z45a1 | 342 | Galactose mutarotase {Baker's yeast (Saccharomyces | 99.86 | |
| d1nsza_ | 340 | Galactose mutarotase {Lactococcus lactis [TaxId: 1 | 99.84 | |
| d1so0a_ | 344 | Galactose mutarotase {Human (Homo sapiens) [TaxId: | 99.84 | |
| d1lura_ | 329 | Aldose 1-epimerase homologue {Nematode (Caenorhabd | 99.84 | |
| d1ejxb_ | 101 | Urease, beta-subunit {Klebsiella aerogenes [TaxId: | 84.8 | |
| d4ubpb_ | 122 | Urease, beta-subunit {Bacillus pasteurii [TaxId: 1 | 80.16 |
| >d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Supersandwich superfamily: Galactose mutarotase-like family: Hypothetical protein HI1317 domain: Hypothetical protein HI1317 species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=7.1e-53 Score=372.85 Aligned_cols=230 Identities=26% Similarity=0.450 Sum_probs=188.1
Q ss_pred eEecCCCCCcEEEEECCCcceEEE--------------------------EecCCCCCcCCcceEccccCCCCCCcccee
Q 023497 4 NIVHDKDGLPRIILTEPTGSSAES--------------------------FWKPPKAIRGGIPVCFPQFGNLGLLEQHGF 57 (281)
Q Consensus 4 ~~~~~~~~l~~~~l~~~~g~~~~v--------------------------~~~~~~~irgGiPv~fP~~G~~~~~p~HGf 57 (281)
++++ .|+++.++|+|+.+ +|+| .|++.++|||||||||||||+ ..+|+|||
T Consensus 14 ~~~~-~~~l~~i~i~~~~~-~a~i~~~Ga~l~s~~~~~~~~e~Lw~s~~a~~~~~~~IRGGiPi~fP~fG~-~~~p~HGF 90 (269)
T d1jova_ 14 HLVQ-HNDIPVLHLKHAVG-TAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWFGG-VKQPAHGT 90 (269)
T ss_dssp EEEE-ETTEEEEEEEETTE-EEEEETBTTEEEEEEETTCSSCSBCBCTTCCCCTTSCCSBSCCEEBSSCGG-GSSSTTBS
T ss_pred Eeec-cCCccEEEEeCCCE-EEEEECCCCEEEEEEECCCCceEEEeCChhhccCCCcccCCcceeCcccCC-CCCCCCcc
Confidence 3344 68999999999986 6788 578899999999999999998 57899999
Q ss_pred eeccCeEEeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEEeCCeeEEEEEEEeCCCCceeeeecCcceee
Q 023497 58 ARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 137 (281)
Q Consensus 58 aR~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~ 137 (281)
||++.|+|++... +...+.++++ ...|||.|+++++|+|+ | +++++|+++++|||++|+||||+
T Consensus 91 AR~~~w~l~~~~~------~~~~~~l~~~-----l~~~~~~f~~~~~~~lt---l--~~~l~n~~~~~~pf~~g~HpyF~ 154 (269)
T d1jova_ 91 ARIRLWQLSHYYI------SVHKVRLEFE-----LFSDLNIIEAKVSMVFT---D--KCHLTFTHYGEESAQAALHTYFN 154 (269)
T ss_dssp GGGSBCEEEEEEE------ETTEEEEEEE-----EECTTSCEEEEEEEEES---S--SEEEEEEECCSSCEEEEECCEEE
T ss_pred ccccceEEEEEec------CCceEEEEEE-----eccCCCcceEEEEEEec---c--EEEEEEccCCCccceecccceEe
Confidence 9999999998742 3344444442 24578899999888874 3 45567777889999999999999
Q ss_pred cCCCCeeEEEcCCCCccccccCccccccccCceEEeccCcceEEcCCCCeEEEEeCCCCcEEEEEecCCCcEEEeCCccc
Q 023497 138 VSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDK 217 (281)
Q Consensus 138 v~~~~~~~v~gl~~~~~~d~l~~~~~~~~~~~~l~~~~~~D~vy~~~~~~~~l~~~~~~~~i~i~~~~~~~~vvwnP~~~ 217 (281)
|++++++.+.|+++..|.+.. .... ...+.+.+.+++|++|.+.++.+.|.|...+++|+|+.+|++++||||||.+
T Consensus 155 v~d~~~~~v~gl~~~~~~~~~-~~~~--~~~~~~~~~~~~D~i~~~~~~~~~i~d~~~~~~i~v~~~g~~~~vVWnP~~~ 231 (269)
T d1jova_ 155 IGDINQVEVQGLPETCFNSLN-QQQE--NVPSPRHISENVDCIYSAENMQNQILDKSFNRTIALHHHNASQFVLWNPWHK 231 (269)
T ss_dssp CSCGGGEEEESCCSEEEETTT-TEEE--ECCSSBCCSSCEEEEEECSSSEEEEEETTTTEEEEEEEESCSEEEEEECTTS
T ss_pred cCCccceEEecCCcccccccc-cccc--ccCCCcccCcCeeEEecCCCCcEEEEeCCCCCEEEEEEeCCCcEEEECCccc
Confidence 999999999999887665433 2221 1234577889999999998889999999999999999999999999999988
Q ss_pred ccccCCCCCCCCCcceEEecccccCCCeEeCCCCEEEEEEEEE
Q 023497 218 KAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELS 260 (281)
Q Consensus 218 ~~~~~~d~~~~~~~~~vCvEp~~~~~~~~L~pge~~~~~~~i~ 260 (281)
+++.|. +++|++||||||+++. .+|+|||+|+++++|+
T Consensus 232 ~a~~~~---d~~~~~fvCVEp~~~~--~~L~PGes~~~~~~ir 269 (269)
T d1jova_ 232 KTSGMS---ETGYQKMLCLETARIH--HLLEFGESLSVEISLK 269 (269)
T ss_dssp CCTTCC---TTGGGGEEEEEEEEEE--EEECTTCEEEEEEEEC
T ss_pred hhcccc---ccCCCCEEEECcccCC--ceECCCCeEEEEEEEC
Confidence 776554 4669999999999874 4899999999999874
|
| >d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
| >d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
| >d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|