Citrus Sinensis ID: 023497


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
MPLNIVHDKDGLPRIILTEPTGSSAESFWKPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELSTVSSSYCSGQLDPRRVLHGFH
ccEEEEEcccccEEEEEEccccccccccccccccccccccEEcEEccccccccccEEccccccEEEEcccccccccccEEEEEEEcccccHHccccccEEEEEEEEEEccEEEEEEEEEEccccEEEEEEEccEEEEEcccccEEEEccccccEEEccccccccccccccccccccccEEEcccccEEEEEEcccccEEEEEEEcccccEEEccccccccccccccccccccEEEEEcccccccEEEccccEEEEEEEEEEEEcccccccccccccccccc
ccEEEEEccccccEEEEEccccccccccccccccEEccccccccccccccccccccccEcccEEEEccccccccccccEEEEEEEcccccccccccccEEEEEEEEEccccEEEEEEEEEcccccEEEEHHHHHHEEcccccEEEEEcccccHHHHccccccEEEEcccEEEEcccccEEEEccccEEEEEccccccEEEEEEcccccEEEEccHHHHHHHHcccccccccEEEEEEEccccccEEEcccccEEEEEEEEEEEcccccccccHHHEHcccc
mplnivhdkdglpriilteptgssaesfwkppkairggipvcfpqfgnlglleqhgfarnrfwsldedasplppannqstVDLILKSTEEDIKAWPRGFELRLRIsispgkltliprvrnvdnKAFSFMFALRNylsvsdisevRVEGLETLDYFDYlmnkerfteqadaitfdgeidrvylstptkiaiIDHEKKRTFelrkdgmpdsvvwnpwdkkakalpdmgvdgykTMLCVdsaaienpivlkpfeewrgrqelstvsssycsgqldprrvlhgfh
mplnivhdkdglpriilteptgssaesfWKPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLrisispgkltliprvrNVDNKAFSFMFALRNylsvsdisevRVEGLETLDYFDYLMNKERFTeqadaitfdgeiDRVYlstptkiaiidhekkrtfelrkdgmpdsvvwnpwdkkakalpdMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELStvsssycsgqldprrvlhgfh
MPLNIVHDKDGLPRIILTEPTGSSAESFWKPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELSTVSSSYCSGQLDPRRVLHGFH
********************************KAIRGGIPVCFPQFGNLGLLEQHGFARNRFWSLD**************VDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQ************************
MPLNIVHDKDGLPRIILTEPTGSSAESFWKPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELSTVSSSYCSGQLDPRRVLHG**
MPLNIVHDKDGLPRIILTEPTGSSAESFWKPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELSTVSSSYCSGQLDPRRVLHGFH
MPLNIVHDKDGLPRIILTEPTGSSAESFWKPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELSTVSSSYCSGQLDPRRVLHGFH
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPLNIVHDKDGLPRIILTEPTGSSAESFWKPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELSTVSSSYCSGQLDPRRVLHGFH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query281 2.2.26 [Sep-21-2011]
Q40784329 Putative glucose-6-phosph N/A no 0.907 0.775 0.647 9e-95
Q03161297 Glucose-6-phosphate 1-epi yes no 0.822 0.777 0.306 3e-25
P39173294 Putative glucose-6-phosph N/A no 0.683 0.653 0.349 5e-18
P44160271 Putative glucose-6-phosph yes no 0.683 0.708 0.274 7e-14
>sp|Q40784|AAPC_CENCI Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1 Back     alignment and function desciption
 Score =  346 bits (888), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 169/261 (64%), Positives = 201/261 (77%), Gaps = 6/261 (2%)

Query: 24  SAESFWKPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPLP--PANNQSTV 81
           S+++ +KPPKAIRGGIP+C PQFG  G LEQHGFARNRFWS+D D  PLP  PA  ++ V
Sbjct: 70  SSKAIFKPPKAIRGGIPICLPQFGTHGNLEQHGFARNRFWSIDNDPPPLPVNPAI-KAFV 128

Query: 82  DLILKSTEEDIKAWPRGFELRLRISISP-GKLTLIPRVRNV--DNKAFSFMFALRNYLSV 138
           DLIL+  EED+K WP  FE RLR+++ P G L+L  R+RN   D + FS+ FA   Y  V
Sbjct: 129 DLILRPAEEDLKIWPHSFEFRLRVALGPSGDLSLTSRIRNTNTDGRPFSYTFAYHTYFFV 188

Query: 139 SDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRT 198
           SDISEVRVEGLET+DY D L  KERFTEQ DAI F+ E+D+VYL+ P+KIAIIDHEKK+T
Sbjct: 189 SDISEVRVEGLETMDYLDNLKAKERFTEQGDAIVFESEVDKVYLAAPSKIAIIDHEKKKT 248

Query: 199 FELRKDGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQE 258
           F + K+G+PD+VVWNPWDKKAKA+ D G   YK MLCV+ AA+E PI LKP EEWRGR  
Sbjct: 249 FVVTKEGLPDAVVWNPWDKKAKAMQDFGDAEYKNMLCVEPAAVEKPITLKPGEEWRGRIA 308

Query: 259 LSTVSSSYCSGQLDPRRVLHG 279
           LS V SSYCSGQLDP +VLHG
Sbjct: 309 LSAVPSSYCSGQLDPLKVLHG 329





Cenchrus ciliaris (taxid: 35872)
EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5
>sp|Q03161|YMY9_YEAST Glucose-6-phosphate 1-epimerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR099C PE=1 SV=1 Back     alignment and function description
>sp|P39173|YEAD_ECOLI Putative glucose-6-phosphate 1-epimerase OS=Escherichia coli (strain K12) GN=yeaD PE=1 SV=2 Back     alignment and function description
>sp|P44160|Y1317_HAEIN Putative glucose-6-phosphate 1-epimerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1317 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query281
255560932306 aldose 1-epimerase, putative [Ricinus co 1.0 0.918 0.784 1e-135
255560928305 aldose 1-epimerase, putative [Ricinus co 0.992 0.914 0.779 1e-133
224055575306 predicted protein [Populus trichocarpa] 1.0 0.918 0.758 1e-133
225452318306 PREDICTED: putative glucose-6-phosphate 0.996 0.915 0.763 1e-131
297811575306 aldose 1-epimerase family protein [Arabi 0.992 0.911 0.726 1e-126
18417396306 aldose 1-epimerase family protein [Arabi 0.992 0.911 0.723 1e-126
297832784306 aldose 1-epimerase family protein [Arabi 0.992 0.911 0.730 1e-126
28393808306 unknown protein [Arabidopsis thaliana] 0.992 0.911 0.720 1e-125
18395868306 glucose-6-phosphate 1-epimerase [Arabido 0.992 0.911 0.730 1e-125
7573475381 putative protein [Arabidopsis thaliana] 0.992 0.732 0.721 1e-125
>gi|255560932|ref|XP_002521479.1| aldose 1-epimerase, putative [Ricinus communis] gi|223539378|gb|EEF40969.1| aldose 1-epimerase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  485 bits (1248), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/306 (78%), Positives = 255/306 (83%), Gaps = 25/306 (8%)

Query: 1   MPLNIVHDKDGLPRIILTEPTGSSAE-------------------------SFWKPPKAI 35
           MPLNIV+D DGLP+IILTEPTGSSAE                         +  K PKAI
Sbjct: 1   MPLNIVNDVDGLPKIILTEPTGSSAEVLLYGGQVVSWKNERREELLFMSTKAVLKAPKAI 60

Query: 36  RGGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAW 95
           RGGIPVCFPQFGNLG LEQHGFARN+ WSLD D  PLPP NNQS+VDLILKSTEED+K W
Sbjct: 61  RGGIPVCFPQFGNLGSLEQHGFARNKLWSLDSDPLPLPPVNNQSSVDLILKSTEEDLKTW 120

Query: 96  PRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISEVRVEGLETLDYF 155
           PR FELRLRISISPGKLTLIPRVRN DNKAFSF FAL NYLSVSDISEVR+EGLETLDYF
Sbjct: 121 PRSFELRLRISISPGKLTLIPRVRNTDNKAFSFTFALCNYLSVSDISEVRIEGLETLDYF 180

Query: 156 DYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPW 215
           D LM +ERFTEQADAITFD EIDR+YLSTPTKIAIIDHEKKRTF LRKDG+PD+VVWNPW
Sbjct: 181 DNLMQRERFTEQADAITFDAEIDRIYLSTPTKIAIIDHEKKRTFVLRKDGLPDAVVWNPW 240

Query: 216 DKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELSTVSSSYCSGQLDPRR 275
           DKKAKAL D+G D YKTMLCVDSAAIE PIVLKPFEEW+G QELSTVSSSYCSGQLDP +
Sbjct: 241 DKKAKALQDLGDDDYKTMLCVDSAAIETPIVLKPFEEWKGHQELSTVSSSYCSGQLDPGK 300

Query: 276 VLHGFH 281
           VL+GF 
Sbjct: 301 VLYGFQ 306




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560928|ref|XP_002521477.1| aldose 1-epimerase, putative [Ricinus communis] gi|223539376|gb|EEF40967.1| aldose 1-epimerase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224055575|ref|XP_002298547.1| predicted protein [Populus trichocarpa] gi|222845805|gb|EEE83352.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225452318|ref|XP_002272928.1| PREDICTED: putative glucose-6-phosphate 1-epimerase [Vitis vinifera] gi|296087598|emb|CBI34854.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297811575|ref|XP_002873671.1| aldose 1-epimerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319508|gb|EFH49930.1| aldose 1-epimerase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18417396|ref|NP_568301.1| aldose 1-epimerase family protein [Arabidopsis thaliana] gi|58743290|gb|AAW81723.1| At5g14500 [Arabidopsis thaliana] gi|108385311|gb|ABF85771.1| At5g14500 [Arabidopsis thaliana] gi|332004658|gb|AED92041.1| aldose 1-epimerase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297832784|ref|XP_002884274.1| aldose 1-epimerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297330114|gb|EFH60533.1| aldose 1-epimerase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|28393808|gb|AAO42313.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18395868|ref|NP_566143.1| glucose-6-phosphate 1-epimerase [Arabidopsis thaliana] gi|30678376|ref|NP_850493.1| glucose-6-phosphate 1-epimerase [Arabidopsis thaliana] gi|6016717|gb|AAF01543.1|AC009325_13 unknown protein [Arabidopsis thaliana] gi|15810277|gb|AAL07026.1| unknown protein [Arabidopsis thaliana] gi|20258973|gb|AAM14202.1| unknown protein [Arabidopsis thaliana] gi|21593681|gb|AAM65648.1| unknown [Arabidopsis thaliana] gi|332640171|gb|AEE73692.1| glucose-6-phosphate 1-epimerase [Arabidopsis thaliana] gi|332640172|gb|AEE73693.1| glucose-6-phosphate 1-epimerase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|7573475|emb|CAB87789.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query281
TAIR|locus:2145748306 AT5G14500 [Arabidopsis thalian 0.911 0.836 0.792 7.5e-120
TAIR|locus:2084233306 AT3G01590 [Arabidopsis thalian 0.911 0.836 0.800 1.5e-119
TAIR|locus:2165580312 AT5G57330 [Arabidopsis thalian 0.903 0.814 0.643 2.4e-91
TAIR|locus:2082842317 AT3G61610 [Arabidopsis thalian 0.889 0.788 0.561 2.5e-81
TAIR|locus:2128519306 AT4G23730 [Arabidopsis thalian 0.864 0.794 0.574 1.4e-78
TAIR|locus:2117572318 AT4G25900 [Arabidopsis thalian 0.846 0.748 0.489 4.2e-65
ASPGD|ASPL0000045178315 AN10222 [Emericella nidulans ( 0.800 0.714 0.379 1.1e-34
UNIPROTKB|Q9KQJ7296 VC_2001 "Putative uncharacteri 0.775 0.736 0.365 3.7e-32
TIGR_CMR|VC_2001296 VC_2001 "conserved hypothetica 0.775 0.736 0.365 3.7e-32
UNIPROTKB|G4N684326 MGG_08597 "Uncharacterized pro 0.736 0.634 0.318 5.3e-30
TAIR|locus:2145748 AT5G14500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1104 (393.7 bits), Expect = 7.5e-120, Sum P(2) = 7.5e-120
 Identities = 203/256 (79%), Positives = 229/256 (89%)

Query:    24 SAESFWKPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDL 83
             S ++  KPPKAIRGG+P+ FPQFGN G LE+HGFARNRFWSLD D SPLPPAN QSTVDL
Sbjct:    49 STKAQLKPPKAIRGGLPISFPQFGNFGALERHGFARNRFWSLDNDPSPLPPANQQSTVDL 108

Query:    84 ILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISE 143
             +LKSTE+D+K WP  FELR+RISISPGKLT+IPRVRN D KAFSFMF+LRNYL VSDISE
Sbjct:   109 VLKSTEDDLKIWPHSFELRVRISISPGKLTIIPRVRNTDTKAFSFMFSLRNYLYVSDISE 168

Query:   144 VRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRK 203
             VRVEGLETLDY D LM +ERFTEQADAITFDGE+D+VYL+TPTKIAIIDHE+KRT ELRK
Sbjct:   169 VRVEGLETLDYLDNLMRRERFTEQADAITFDGEVDKVYLNTPTKIAIIDHERKRTIELRK 228

Query:   204 DGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELSTVS 263
             +GMP++ VWNPWDKKAK++ DMG + Y TMLCVDS AIE+PIVLKP EEW+GRQELS VS
Sbjct:   229 EGMPNAAVWNPWDKKAKSIADMGDEDYTTMLCVDSGAIESPIVLKPHEEWKGRQELSIVS 288

Query:   264 SSYCSGQLDPRRVLHG 279
             SSYCSGQLDPR+VL+G
Sbjct:   289 SSYCSGQLDPRKVLYG 304


GO:0003824 "catalytic activity" evidence=IEA
GO:0004034 "aldose 1-epimerase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006012 "galactose metabolic process" evidence=ISS
GO:0016853 "isomerase activity" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0009086 "methionine biosynthetic process" evidence=RCA
TAIR|locus:2084233 AT3G01590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165580 AT5G57330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082842 AT3G61610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128519 AT4G23730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117572 AT4G25900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000045178 AN10222 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KQJ7 VC_2001 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2001 VC_2001 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|G4N684 MGG_08597 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.1.3.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
fgenesh4_pm.C_LG_I000875
hypothetical protein (306 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.VIII.2574.1
glucose-6-phosphate isomerase (EC-5.3.1.9) (569 aa)
       0.899
gw1.II.3030.1
glucose-6-phosphate isomerase (EC-5.3.1.9) (542 aa)
       0.899
fgenesh4_pm.C_LG_I000617
hexokinase (508 aa)
       0.899
fgenesh4_pg.C_LG_VII001238
hexokinase (EC-2.7.1.2) (502 aa)
       0.899
fgenesh4_pg.C_LG_IX001086
hexokinase (508 aa)
       0.899
eugene3.00121193
phosphoglucomutase (EC-5.4.2.2) (631 aa)
       0.899
estExt_fgenesh4_pm.C_LG_VIII0571
phosphoglucomutase (EC-5.4.2.2) (582 aa)
       0.899
estExt_fgenesh4_pg.C_LG_XVIII0751
hexokinase (EC-2.7.1.1) (498 aa)
       0.899
estExt_fgenesh4_pg.C_LG_XV1054
phosphoglucomutase (EC-5.4.2.2) (551 aa)
       0.899
estExt_fgenesh4_pg.C_LG_X0989
phosphoglucomutase (EC-5.4.2.2) (582 aa)
       0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query281
cd09020269 cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate 1e-102
pfam01263301 pfam01263, Aldose_epim, Aldose 1-epimerase 3e-50
COG0676287 COG0676, COG0676, Uncharacterized enzymes related 4e-50
cd09025271 cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, 1e-23
cd09024288 cd09024, Aldose_epim_lacX, Aldose 1-epimerase, sim 7e-07
cd01081284 cd01081, Aldose_epim, aldose 1-epimerase superfami 0.002
>gnl|CDD|185697 cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like Back     alignment and domain information
 Score =  297 bits (764), Expect = e-102
 Identities = 106/241 (43%), Positives = 133/241 (55%), Gaps = 9/241 (3%)

Query: 23  SSAESFWKPPKAIRGGIPVCFPQFGNLG---LLEQHGFARNRFWSLDEDASPLPPANNQS 79
           S    F    KAIRGGIPVC+P FG  G    L  HGFAR R W L E +       +  
Sbjct: 35  SPQAPF-DGGKAIRGGIPVCWPWFGPHGPNADLPAHGFARTRLWELLEVSED----EDGV 89

Query: 80  TVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVS 139
           TV L L  T+E    WP  FELRL +++    L L   V N  +K FSF  AL  Y  VS
Sbjct: 90  TVSLELDDTDETRAIWPHAFELRLTVTLGFDTLELELTVTNTGDKPFSFTAALHTYFRVS 149

Query: 140 DISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTF 199
           DI +VRVEGLE   Y D L ++     Q  A+TFDGE+DRVYL+TP  + I D    R  
Sbjct: 150 DIEQVRVEGLEGATYLDKLTDQRE-KVQGGAVTFDGEVDRVYLNTPAPLTIDDPAWGRRI 208

Query: 200 ELRKDGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQEL 259
            + K G P +VVWNPW +KA  + D   DGY+ M+CV++A + +P+ L P E     Q +
Sbjct: 209 RIEKSGSPSAVVWNPWIEKAARMADFPDDGYRRMVCVEAANVADPVTLAPGESHTLSQTI 268

Query: 260 S 260
           S
Sbjct: 269 S 269


D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P. Length = 269

>gnl|CDD|216397 pfam01263, Aldose_epim, Aldose 1-epimerase Back     alignment and domain information
>gnl|CDD|223748 COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|185702 cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, similar to Synechocystis Slr1438 Back     alignment and domain information
>gnl|CDD|185701 cd09024, Aldose_epim_lacX, Aldose 1-epimerase, similar to Lactococcus lactis lacX Back     alignment and domain information
>gnl|CDD|185695 cd01081, Aldose_epim, aldose 1-epimerase superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 281
KOG1594305 consensus Uncharacterized enzymes related to aldos 100.0
cd09020269 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase- 100.0
COG0676287 Uncharacterized enzymes related to aldose 1-epimer 100.0
cd09025271 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to 100.0
cd09021273 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to 100.0
cd09024288 Aldose_epim_lacX Aldose 1-epimerase, similar to La 100.0
cd01081284 Aldose_epim aldose 1-epimerase superfamily. Aldose 100.0
PF01263300 Aldose_epim: Aldose 1-epimerase; InterPro: IPR0081 100.0
cd09022284 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to 99.98
PRK15172300 putative aldose-1-epimerase; Provisional 99.97
COG2017308 GalM Galactose mutarotase and related enzymes [Car 99.96
cd09019326 galactose_mutarotase_like galactose mutarotase_lik 99.95
PLN00194337 aldose 1-epimerase; Provisional 99.93
TIGR02636335 galM_Leloir galactose mutarotase. Members of this 99.9
PRK11055342 galM galactose-1-epimerase; Provisional 99.87
PTZ00485376 aldolase 1-epimerase; Provisional 99.81
cd09023284 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar t 99.77
KOG1604353 consensus Predicted mutarotase [Carbohydrate trans 99.46
cd09269293 deoxyribose_mutarotase deoxyribose mutarotase_like 99.22
PF14486302 DUF4432: Domain of unknown function (DUF4432); PDB 98.82
PF14315274 DUF4380: Domain of unknown function (DUF4380) 88.63
PF09095278 DUF1926: Domain of unknown function (DUF1926); Int 86.64
COG0832106 UreB Urea amidohydrolase (urease) beta subunit [Am 84.38
PF00699100 Urease_beta: Urease beta subunit CAUTION: The Pros 82.94
TIGR00192101 urease_beta urease, beta subunit. In a number of s 82.76
cd00407101 Urease_beta Urease beta-subunit; Urease is a nicke 82.54
PRK13203102 ureB urease subunit beta; Reviewed 82.43
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
Probab=100.00  E-value=1.1e-71  Score=473.71  Aligned_cols=269  Identities=66%  Similarity=1.172  Sum_probs=255.5

Q ss_pred             CCeeEecCCCCCcEEEEECCCcceEEE-------------------------EecCCCCCcCCcceEccccCCCCCCccc
Q 023497            1 MPLNIVHDKDGLPRIILTEPTGSSAES-------------------------FWKPPKAIRGGIPVCFPQFGNLGLLEQH   55 (281)
Q Consensus         1 ~~~~~~~~~~~l~~~~l~~~~g~~~~v-------------------------~~~~~~~irgGiPv~fP~~G~~~~~p~H   55 (281)
                      |++...++.+|+..|+|++|.|++|+|                         .|++.+|||||||+|||+||..+.+++|
T Consensus        12 ~~~~~~k~~~g~~~ivL~~p~g~taev~L~Gg~V~SWK~~~geElLf~S~kA~f~ppKpIRGGIP~~FPQFG~~g~l~qH   91 (305)
T KOG1594|consen   12 MPVELAKGRNGLDKIVLTDPRGSTAEVYLYGGQVVSWKNENGEELLFVSTKAIFKPPKPIRGGIPICFPQFGNFGSLPQH   91 (305)
T ss_pred             ccceeecccCCCceEEEeCCCCCeEEEEEeccEEEEeecCCCceeEEechhhhcCCCCcccCCcceEeeccCCCCccccc
Confidence            678889999999999999999999998                         6799999999999999999999999999


Q ss_pred             eeeeccCeEEeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEEeCCeeEEEEEEEeCCCCceeeeecCcce
Q 023497           56 GFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNY  135 (281)
Q Consensus        56 GfaR~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpY  135 (281)
                      ||||++.|+++....+++ ......|.|.|.+++++++.|||+|++++++.|.++.|+++..|+|++++||.|++++|+|
T Consensus        92 GFaRn~~W~v~~~p~~lp-~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~g~Lt~~~rV~Ntd~KpFsF~~alHtY  170 (305)
T KOG1594|consen   92 GFARNRFWEVENNPPPLP-SLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGDGELTLTSRVRNTDSKPFSFSFALHTY  170 (305)
T ss_pred             ccccceeeEeccCCCCCC-cCCceeEEEEecCChhhhhhCCcceEEEEEEEEcCCceEEEEEeecCCCCceEEEeEeeee
Confidence            999999999997754333 2245789999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCeeEEEcCCCCccccccCccccccccCceEEeccCcceEEcCCCCeEEEEeCCCCcEEEEEecCCCcEEEeCCc
Q 023497          136 LSVSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPW  215 (281)
Q Consensus       136 F~v~~~~~~~v~gl~~~~~~d~l~~~~~~~~~~~~l~~~~~~D~vy~~~~~~~~l~~~~~~~~i~i~~~~~~~~vvwnP~  215 (281)
                      |+++|++.++|+||+++.|+|++...+.++++.++++|.+++||||+++|.++.|.|..++|+|.|.+.|+|++||||||
T Consensus       171 f~vsdisevrveGL~tldylD~~~~~~~~tE~~davTF~~e~DrvYl~tp~e~aI~dh~~krti~l~k~g~pDaVVWNPW  250 (305)
T KOG1594|consen  171 FRVSDISEVRVEGLETLDYLDNLKNRERFTEQRDAVTFNSEVDRVYLNTPTELAIFDHEKKRTIVLKKEGLPDAVVWNPW  250 (305)
T ss_pred             EeecccceEEEeccccccccccccchhhccccCceEeeccceeeEEecCCceEEEEEeccccEEEEeccCCCceEEeChh
Confidence            99999999999999999999999888889999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCCCCcceEEecccccCCCeEeCCCCEEEEEEEEEEEecccccCC
Q 023497          216 DKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELSTVSSSYCSGQ  270 (281)
Q Consensus       216 ~~~~~~~~d~~~~~~~~~vCvEp~~~~~~~~L~pge~~~~~~~i~~~~~~~~~~~  270 (281)
                      .++++.|+||++++|++|+|||++.+..+++|+||++|++++.+++.+.+|||||
T Consensus       251 ~kksk~maD~gde~Y~~mlCVe~a~v~~pI~L~PG~eW~g~q~Lsiv~s~~~s~q  305 (305)
T KOG1594|consen  251 DKKSKTMADFGDEDYKHMLCVESAAVESPITLKPGEEWKGRQLLSIVPSSYCSGQ  305 (305)
T ss_pred             HhhhhhhhhccccccceeEEecccccCCceeecCCccceeEEEEEEeecccccCC
Confidence            9999999999999999999999999999999999999999999999999999997



>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like Back     alignment and domain information
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438 Back     alignment and domain information
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB Back     alignment and domain information
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX Back     alignment and domain information
>cd01081 Aldose_epim aldose 1-epimerase superfamily Back     alignment and domain information
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5 Back     alignment and domain information
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR Back     alignment and domain information
>PRK15172 putative aldose-1-epimerase; Provisional Back     alignment and domain information
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09019 galactose_mutarotase_like galactose mutarotase_like Back     alignment and domain information
>PLN00194 aldose 1-epimerase; Provisional Back     alignment and domain information
>TIGR02636 galM_Leloir galactose mutarotase Back     alignment and domain information
>PRK11055 galM galactose-1-epimerase; Provisional Back     alignment and domain information
>PTZ00485 aldolase 1-epimerase; Provisional Back     alignment and domain information
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013 Back     alignment and domain information
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like Back     alignment and domain information
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A Back     alignment and domain information
>PF14315 DUF4380: Domain of unknown function (DUF4380) Back     alignment and domain information
>PF09095 DUF1926: Domain of unknown function (DUF1926); InterPro: IPR015179 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals Back     alignment and domain information
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3 Back     alignment and domain information
>TIGR00192 urease_beta urease, beta subunit Back     alignment and domain information
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide Back     alignment and domain information
>PRK13203 ureB urease subunit beta; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query281
2cir_A297 Structure-Based Functional Annotation: Yeast Ymr099 2e-26
2ciq_A297 Structure-Based Functional Annotation: Yeast Ymr099 2e-26
2hta_A309 Crystal Structure Of A Putative Mutarotase (Yead) F 4e-20
1jov_A270 Crystal Structure Analysis Of Hi1317 Length = 270 3e-15
3k25_A289 Crystal Structure Of Slr1438 Protein From Synechocy 1e-07
>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes For A D-Hexose-6-Phosphate Mutarotase. Complex With Glucose-6-Phosphate Length = 297 Back     alignment and structure

Iteration: 1

Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 117/251 (46%), Gaps = 20/251 (7%) Query: 33 KAIRGGIPVCFPQFG------NLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILK 86 K +RGGIP+ FP FG +L L QHG ARN W PP TV LK Sbjct: 54 KPVRGGIPLVFPVFGKNSTDEHLSKLPQHGLARNSTWEFLGQTKENPP-----TVQFGLK 108 Query: 87 ---STEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDN-KAFSFMFALRNYLSVSDIS 142 + E K WP + L L + + L V N + K F + Y + DI Sbjct: 109 PEIANPELTKLWPMDYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIE 168 Query: 143 EVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVY--LSTPTKIAIIDHEKKRTFE 200 V L + +D L+ KE + ++ +TF+ E D +Y +S I I+D + + Sbjct: 169 GTMVSNLAGMKLYDQLL-KESYVDKHPVVTFNQETDVIYQNVSAERAIQIVD-KGVQIHT 226 Query: 201 LRKDGMPDSVVWNPWDKKAKALPDMG-VDGYKTMLCVDSAAIENPIVLKPFEEWRGRQEL 259 L++ +PD+VVWNPW +K++ + D GY+ M+C++ + + I L P ++W Q L Sbjct: 227 LKRYNLPDTVVWNPWIEKSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNAYQLL 286 Query: 260 STVSSSYCSGQ 270 Y + Q Sbjct: 287 XKEELKYQAIQ 297
>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes For A D-Hexose-6-Phosphate Mutarotase Length = 297 Back     alignment and structure
>pdb|2HTA|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From Salmonella Typhimurium In Orthorhombic Form Length = 309 Back     alignment and structure
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317 Length = 270 Back     alignment and structure
>pdb|3K25|A Chain A, Crystal Structure Of Slr1438 Protein From Synechocystis Sp. Pcc 6803, Northeast Structural Genomics Consortium Target Sgr112 Length = 289 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query281
2cir_A297 Hexose-6-phosphate mutarotase; hypothetical protei 7e-83
2hta_A309 Putative enzyme related to aldose 1-epimerase; car 4e-76
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 4e-62
1jov_A270 HI1317; hypothetical protein, structure 2 function 3e-60
3dcd_A307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 9e-31
3q1n_A294 Galactose mutarotase related enzyme; structural ge 9e-29
3os7_A341 Galactose mutarotase-like protein; structural geno 3e-11
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 1e-09
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Length = 297 Back     alignment and structure
 Score =  250 bits (639), Expect = 7e-83
 Identities = 74/259 (28%), Positives = 113/259 (43%), Gaps = 18/259 (6%)

Query: 24  SAESFWKPPKAIRGGIPVCFPQFGNL------GLLEQHGFARNRFWSLDEDASPLPPANN 77
           S  +     K +RGGIP+ FP FG          L QHG ARN  W             N
Sbjct: 45  STAAKLDGSKPVRGGIPLVFPVFGKNSTDEHLSKLPQHGLARNSTWEFLGQ-----TKEN 99

Query: 78  QSTVDLILK---STEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVD-NKAFSFMFALR 133
             TV   LK   +  E  K WP  + L L + +    L     V N   +K   F +   
Sbjct: 100 PPTVQFGLKPEIANPELTKLWPMDYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFH 159

Query: 134 NYLSVSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDH 193
            Y  + DI    V  L  +  +D L  KE + ++   +TF+ E D +Y +   + AI   
Sbjct: 160 TYFRIEDIEGTMVSNLAGMKLYDQL-LKESYVDKHPVVTFNQETDVIYQNVSAERAIQIV 218

Query: 194 E-KKRTFELRKDGMPDSVVWNPWDKKAKALPDMG-VDGYKTMLCVDSAAIENPIVLKPFE 251
           +   +   L++  +PD+VVWNPW +K++ + D     GY+ M+C++   + + I L P +
Sbjct: 219 DKGVQIHTLKRYNLPDTVVWNPWIEKSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGK 278

Query: 252 EWRGRQELSTVSSSYCSGQ 270
           +W   Q L      Y + Q
Sbjct: 279 KWNAYQLLCKEELKYQAIQ 297


>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Length = 309 Back     alignment and structure
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Length = 289 Back     alignment and structure
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Length = 270 Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Length = 307 Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Length = 294 Back     alignment and structure
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Length = 341 Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Length = 291 Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Length = 326 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query281
1jov_A270 HI1317; hypothetical protein, structure 2 function 100.0
2cir_A297 Hexose-6-phosphate mutarotase; hypothetical protei 100.0
2hta_A309 Putative enzyme related to aldose 1-epimerase; car 100.0
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 100.0
3dcd_A307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 100.0
3q1n_A294 Galactose mutarotase related enzyme; structural ge 100.0
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 100.0
3os7_A341 Galactose mutarotase-like protein; structural geno 100.0
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 100.0
1yga_A342 Hypothetical 37.9 kDa protein in BIO3-HXT17 interg 100.0
1snz_A344 Aldose 1-epimerase; mutarotase, galactosemia, isom 100.0
1lur_A339 Aldose 1-epimerase; vitamin B12, methyltransferase 99.96
1nsx_A347 Galactose mutarotase; epimerase, galactose metabol 99.96
1z45_A699 GAL10 bifunctional protein; epimerase, mutarotase, 99.95
3imh_A338 Galactose-1-epimerase; structural genomics, PSI-2, 99.94
3ty1_A384 Hypothetical aldose 1-epimerase; supersandwich, st 99.83
4ep8_B101 Urease subunit beta; alpha-beta barrel, nickel met 86.01
4ubp_B126 Protein (urease (chain B)); bacillus pasteurii, ni 80.63
4ac7_B126 Urease subunit beta; hydrolase, bacillus pasteurii 80.63
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Back     alignment and structure
Probab=100.00  E-value=1.2e-48  Score=347.79  Aligned_cols=226  Identities=27%  Similarity=0.477  Sum_probs=190.2

Q ss_pred             CCCCcEEEEECCCcceEEE--------------------------EecCCCCCcCCcceEccccCCCCCCccceeeeccC
Q 023497            9 KDGLPRIILTEPTGSSAES--------------------------FWKPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRF   62 (281)
Q Consensus         9 ~~~l~~~~l~~~~g~~~~v--------------------------~~~~~~~irgGiPv~fP~~G~~~~~p~HGfaR~~~   62 (281)
                      .+|++.++|+++.+ +|+|                          .|++.++||||+||||||||++ .+|+|||||++.
T Consensus        18 ~~~~~~~~l~~~~~-~a~i~~~Ga~l~s~~~~~~g~e~Lw~~~~~~~~~~~~irGGiPvlfP~~gr~-~~~~HGfaR~~~   95 (270)
T 1jov_A           18 HNDIPVLHLKHAVG-TAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWFGGV-KQPAHGTARIRL   95 (270)
T ss_dssp             ETTEEEEEEEETTE-EEEEETBTTEEEEEEETTCSSCSBCBCTTCCCCTTSCCSBSCCEEBSSCGGG-SSSTTBSGGGSB
T ss_pred             eCCceEEEEeCCCc-EEEEECCCCEEEEEEECCCCceEEEECcHHhcCCCCCccCccEEEEeccCCC-CCCCCceecCCC
Confidence            68889999998875 5777                          3577789999999999999995 579999999999


Q ss_pred             eEEeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEEeCCeeEEEEEEEeCCCCceeeeecCcceeecCCCC
Q 023497           63 WSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDIS  142 (281)
Q Consensus        63 W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~v~~~~  142 (281)
                      |+|++...    +++...++|.|.+++       +.|+++++|+|.   |+++++|+|+|++  ||++|+||||++++++
T Consensus        96 W~v~~~~~----~~~~v~l~~~l~~~~-------~~f~l~~~~~L~---l~~~~~v~N~g~~--p~~~g~HpyF~v~d~~  159 (270)
T 1jov_A           96 WQLSHYYI----SVHKVRLEFELFSDL-------NIIEAKVSMVFT---DKCHLTFTHYGEE--SAQAALHTYFNIGDIN  159 (270)
T ss_dssp             CEEEEEEE----ETTEEEEEEEEECTT-------SCEEEEEEEEES---SSEEEEEEECCSS--CEEEEECCEEECSCGG
T ss_pred             cEEeeecc----CCCcEEEEEEECCCc-------cccEEEEEEEEC---CeEEEEEEeCCch--hHhhhcccceecCCcc
Confidence            99997631    123456788887643       358999999995   8999999999986  6899999999999988


Q ss_pred             eeEEEcCCCCccccccCccccccccCceEEeccCcceEEcCCCCeEEEEeCCCCcEEEEEecCCCcEEEeCCcccccccC
Q 023497          143 EVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKAL  222 (281)
Q Consensus       143 ~~~v~gl~~~~~~d~l~~~~~~~~~~~~l~~~~~~D~vy~~~~~~~~l~~~~~~~~i~i~~~~~~~~vvwnP~~~~~~~~  222 (281)
                      +++|.|+.+ .|+|+++.....  ..+.+.+++++|++|.++++.++|.+++.+++|+|++++++++||||||.   ++|
T Consensus       160 ~~~v~g~~~-~~~d~l~~~~~~--~~~~~~~~~~~D~vy~~~~~~~~i~d~~~~~~i~v~~~~~~~~vvWnP~~---~~~  233 (270)
T 1jov_A          160 QVEVQGLPE-TCFNSLNQQQEN--VPSPRHISENVDCIYSAENMQNQILDKSFNRTIALHHHNASQFVLWNPWH---KKT  233 (270)
T ss_dssp             GEEEESCCS-EEEETTTTEEEE--CCSSBCCSSCEEEEEECSSSEEEEEETTTTEEEEEEEESCSEEEEEECTT---SCC
T ss_pred             eEEEECCCC-cceeccCCcccc--cCCcccCCCCccceeCCCCCCEEEEECCCCcEEEEEEcCCCeEEEECCCc---ccc
Confidence            999999954 788887653322  33467888899999998878899999999999999999999999999984   469


Q ss_pred             CCCCCCCCcceEEecccccCCCeEeCCCCEEEEEEEEE
Q 023497          223 PDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELS  260 (281)
Q Consensus       223 ~d~~~~~~~~~vCvEp~~~~~~~~L~pge~~~~~~~i~  260 (281)
                      .||++++|++||||||+++  .+.|+|||+++.+++|+
T Consensus       234 ~d~~~~~~~~fvCvEp~~~--~~~L~PGe~~~~~~~i~  269 (270)
T 1jov_A          234 SGMSETGYQKMLCLETARI--HHLLEFGESLSVEISLK  269 (270)
T ss_dssp             TTCCTTGGGGEEEEEEEEE--EEEECTTCEEEEEEEEC
T ss_pred             cccccccCccEEEeCcccc--ceEECCCCEEEEEEEEE
Confidence            9999999999999999875  57999999998888774



>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Back     alignment and structure
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Back     alignment and structure
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Back     alignment and structure
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Back     alignment and structure
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A* Back     alignment and structure
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4 Back     alignment and structure
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A* Back     alignment and structure
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Back     alignment and structure
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus} Back     alignment and structure
>3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp} Back     alignment and structure
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ... Back     alignment and structure
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B* Back     alignment and structure
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 281
d1jova_269 b.30.5.7 (A:) Hypothetical protein HI1317 {Haemoph 8e-61
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Length = 269 Back     information, alignment and structure

class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Hypothetical protein HI1317
domain: Hypothetical protein HI1317
species: Haemophilus influenzae [TaxId: 727]
 Score =  191 bits (487), Expect = 8e-61
 Identities = 57/236 (24%), Positives = 93/236 (39%), Gaps = 25/236 (10%)

Query: 24  SAESFWKPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDL 83
           S    +K   AIRGG+P+C+P FG +     HG AR R W L               + +
Sbjct: 58  SEVEPFKNGNAIRGGVPICYPWFGGVKQ-PAHGTARIRLWQLSH-----------YYISV 105

Query: 84  ILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISE 143
                E ++ +     E ++ +       T    +        S   AL  Y ++ DI++
Sbjct: 106 HKVRLEFELFSDLNIIEAKVSM-----VFTDKCHLTFTHYGEESAQAALHTYFNIGDINQ 160

Query: 144 VRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRK 203
           V V+GL    +      +E              +D +Y +   +  I+D    RT  L  
Sbjct: 161 VEVQGLPETCFNSLNQQQE---NVPSPRHISENVDCIYSAENMQNQILDKSFNRTIALHH 217

Query: 204 DGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQEL 259
                 V+WNPW KK   + +    GY+ MLC+++A I +  +L+  E       L
Sbjct: 218 HNASQFVLWNPWHKKTSGMSE---TGYQKMLCLETARIHH--LLEFGESLSVEISL 268


Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query281
d1jova_269 Hypothetical protein HI1317 {Haemophilus influenza 100.0
d1z45a1342 Galactose mutarotase {Baker's yeast (Saccharomyces 99.86
d1nsza_340 Galactose mutarotase {Lactococcus lactis [TaxId: 1 99.84
d1so0a_344 Galactose mutarotase {Human (Homo sapiens) [TaxId: 99.84
d1lura_329 Aldose 1-epimerase homologue {Nematode (Caenorhabd 99.84
d1ejxb_101 Urease, beta-subunit {Klebsiella aerogenes [TaxId: 84.8
d4ubpb_122 Urease, beta-subunit {Bacillus pasteurii [TaxId: 1 80.16
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Hypothetical protein HI1317
domain: Hypothetical protein HI1317
species: Haemophilus influenzae [TaxId: 727]
Probab=100.00  E-value=7.1e-53  Score=372.85  Aligned_cols=230  Identities=26%  Similarity=0.450  Sum_probs=188.1

Q ss_pred             eEecCCCCCcEEEEECCCcceEEE--------------------------EecCCCCCcCCcceEccccCCCCCCcccee
Q 023497            4 NIVHDKDGLPRIILTEPTGSSAES--------------------------FWKPPKAIRGGIPVCFPQFGNLGLLEQHGF   57 (281)
Q Consensus         4 ~~~~~~~~l~~~~l~~~~g~~~~v--------------------------~~~~~~~irgGiPv~fP~~G~~~~~p~HGf   57 (281)
                      ++++ .|+++.++|+|+.+ +|+|                          .|++.++|||||||||||||+ ..+|+|||
T Consensus        14 ~~~~-~~~l~~i~i~~~~~-~a~i~~~Ga~l~s~~~~~~~~e~Lw~s~~a~~~~~~~IRGGiPi~fP~fG~-~~~p~HGF   90 (269)
T d1jova_          14 HLVQ-HNDIPVLHLKHAVG-TAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWFGG-VKQPAHGT   90 (269)
T ss_dssp             EEEE-ETTEEEEEEEETTE-EEEEETBTTEEEEEEETTCSSCSBCBCTTCCCCTTSCCSBSCCEEBSSCGG-GSSSTTBS
T ss_pred             Eeec-cCCccEEEEeCCCE-EEEEECCCCEEEEEEECCCCceEEEeCChhhccCCCcccCCcceeCcccCC-CCCCCCcc
Confidence            3344 68999999999986 6788                          578899999999999999998 57899999


Q ss_pred             eeccCeEEeecCCCCCCCCCccEEEEEecCChhhhccCCcceEEEEEEEEeCCeeEEEEEEEeCCCCceeeeecCcceee
Q 023497           58 ARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS  137 (281)
Q Consensus        58 aR~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~~f~~g~HpYF~  137 (281)
                      ||++.|+|++...      +...+.++++     ...|||.|+++++|+|+   |  +++++|+++++|||++|+||||+
T Consensus        91 AR~~~w~l~~~~~------~~~~~~l~~~-----l~~~~~~f~~~~~~~lt---l--~~~l~n~~~~~~pf~~g~HpyF~  154 (269)
T d1jova_          91 ARIRLWQLSHYYI------SVHKVRLEFE-----LFSDLNIIEAKVSMVFT---D--KCHLTFTHYGEESAQAALHTYFN  154 (269)
T ss_dssp             GGGSBCEEEEEEE------ETTEEEEEEE-----EECTTSCEEEEEEEEES---S--SEEEEEEECCSSCEEEEECCEEE
T ss_pred             ccccceEEEEEec------CCceEEEEEE-----eccCCCcceEEEEEEec---c--EEEEEEccCCCccceecccceEe
Confidence            9999999998742      3344444442     24578899999888874   3  45567777889999999999999


Q ss_pred             cCCCCeeEEEcCCCCccccccCccccccccCceEEeccCcceEEcCCCCeEEEEeCCCCcEEEEEecCCCcEEEeCCccc
Q 023497          138 VSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDK  217 (281)
Q Consensus       138 v~~~~~~~v~gl~~~~~~d~l~~~~~~~~~~~~l~~~~~~D~vy~~~~~~~~l~~~~~~~~i~i~~~~~~~~vvwnP~~~  217 (281)
                      |++++++.+.|+++..|.+.. ....  ...+.+.+.+++|++|.+.++.+.|.|...+++|+|+.+|++++||||||.+
T Consensus       155 v~d~~~~~v~gl~~~~~~~~~-~~~~--~~~~~~~~~~~~D~i~~~~~~~~~i~d~~~~~~i~v~~~g~~~~vVWnP~~~  231 (269)
T d1jova_         155 IGDINQVEVQGLPETCFNSLN-QQQE--NVPSPRHISENVDCIYSAENMQNQILDKSFNRTIALHHHNASQFVLWNPWHK  231 (269)
T ss_dssp             CSCGGGEEEESCCSEEEETTT-TEEE--ECCSSBCCSSCEEEEEECSSSEEEEEETTTTEEEEEEEESCSEEEEEECTTS
T ss_pred             cCCccceEEecCCcccccccc-cccc--ccCCCcccCcCeeEEecCCCCcEEEEeCCCCCEEEEEEeCCCcEEEECCccc
Confidence            999999999999887665433 2221  1234577889999999998889999999999999999999999999999988


Q ss_pred             ccccCCCCCCCCCcceEEecccccCCCeEeCCCCEEEEEEEEE
Q 023497          218 KAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELS  260 (281)
Q Consensus       218 ~~~~~~d~~~~~~~~~vCvEp~~~~~~~~L~pge~~~~~~~i~  260 (281)
                      +++.|.   +++|++||||||+++.  .+|+|||+|+++++|+
T Consensus       232 ~a~~~~---d~~~~~fvCVEp~~~~--~~L~PGes~~~~~~ir  269 (269)
T d1jova_         232 KTSGMS---ETGYQKMLCLETARIH--HLLEFGESLSVEISLK  269 (269)
T ss_dssp             CCTTCC---TTGGGGEEEEEEEEEE--EEECTTCEEEEEEEEC
T ss_pred             hhcccc---ccCCCCEEEECcccCC--ceECCCCeEEEEEEEC
Confidence            776554   4669999999999874  4899999999999874



>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]} Back     information, alignment and structure
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]} Back     information, alignment and structure