Citrus Sinensis ID: 023501

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
Protein Sequence
MVLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKEGFLDEASSTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWAYKAS
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHcHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccHcccccEEEEEccccEccccccHcHHHHHHHHHHcccccccccccccHHHcHHHHHHHHHHHHHHHHcccEEEcc
Coil and Loop (DISEMBL)
MVLEAGLAGVAKQAEQLRLdgnyyfskdryGAAIDAYTEAItlcpnvpiywtnralchlkrndwTKVEADCRKAIqldhdsvkghyLLGQTLLQRNEYADGIKELEKALNlgrgakpkgyiVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVldisrkegfldeASSTHLKQMEALRQVFRKAaeddtpaevpdylcckitldifrdpvitpsgvtyERAVILDHLdkvgkfdpitreplresqlvpnLAIKEAVRAYMDKhgwaykas
Flexible Loop (DISEMBL)
MVLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIqldhdsvkgHYLLGQTLLQRNEYADGIKELEKAlnlgrgakpkGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKEGFLDEASSTHLKQMEALRQVFRKAAeddtpaevPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKfdpitreplresqlvpnlAIKEAVRAYMDKHGWAYKAS
Low Complexity Region (SEG)
MVLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSlkeaceaaleekHVLDISRKEGFLDEASSTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWAYKAS
Disordered region (IsUnstruct)
*********VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQ******WELQ*LKEACEAALEEKHVLDI**********************************AEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWAY***
Disordered Region (DISOPRED)
******************LDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL*************************************************************************MEAL****************PDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWAYK**
Disordered Region (DISEMBL)
MVLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKEGFLDEASSTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWAYKAS
Disordered Region (DISPRO)
*************AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKEGFLDEASSTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWAYKAS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKEGFLDEASSTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWAYKAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	281	2.2.26 [Sep-21-2011]
Q9SRS9	278	E3 ubiquitin-protein liga	yes	no	0.971	0.982	0.667	1e-108
Q5ZHY5	314	STIP1 homology and U box-	yes	no	0.925	0.828	0.381	4e-45
Q9UNE7	303	E3 ubiquitin-protein liga	yes	no	0.928	0.861	0.376	4e-43
Q9WUD1	304	STIP1 homology and U box-	yes	no	0.928	0.858	0.376	5e-43
Q8VD33	304	Small glutamine-rich tetr	no	no	0.352	0.325	0.363	8e-13
Q80W98	304	Small glutamine-rich tetr	no	no	0.352	0.325	0.363	8e-13
Q96EQ0	304	Small glutamine-rich tetr	no	no	0.352	0.325	0.363	2e-12
Q84XU2	538	Serine/threonine-protein	no	no	0.352	0.184	0.343	3e-11
Q99KD5	944	Protein unc-45 homolog A	no	no	0.391	0.116	0.341	1e-09
Q9H3U1	944	Protein unc-45 homolog A	no	no	0.412	0.122	0.325	3e-09

>sp|Q9SRS9|CHIP_ARATH E3 ubiquitin-protein ligase CHIP OS=Arabidopsis thaliana GN=CHIP PE=1 SV=1

 Score =  391 bits (1005), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/274 (66%), Positives = 224/274 (81%), Gaps = 1/274 (0%)

Query: 7   LAGVAK-QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWT 65
           + GVA   AE+L+ DGN  F K+R+GAAIDAYTEAI L PNVP YWTNRALCH+KR DWT
Sbjct: 2   VTGVASAMAERLKEDGNNCFKKERFGAAIDAYTEAIALSPNVPAYWTNRALCHMKRKDWT 61

Query: 66  KVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDI 125
           KVE DCRKAIQL H+SVK HY+LG  LLQ+ E+ +G+KEL++AL+LGR + P GY+VE+I
Sbjct: 62  KVEEDCRKAIQLVHNSVKAHYMLGLALLQKKEFTNGVKELQRALDLGRCSNPTGYMVEEI 121

Query: 126 WQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKEGFLDEASSTHLKQM 185
           W+EL++AKY+ WE  S+ RSWEL SLKE CEAAL ++  LD+SR E   DEA + H +++
Sbjct: 122 WEELSKAKYMEWELVSAMRSWELNSLKETCEAALNQQRALDMSRTEESSDEAYTAHTERL 181

Query: 186 EALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFD 245
           +AL +VF+KAAE+D P EVPDYLCC ITL+IFRDPVI+PSGVTYERA IL+HL KVGKFD
Sbjct: 182 KALERVFKKAAEEDKPTEVPDYLCCNITLEIFRDPVISPSGVTYERAAILEHLKKVGKFD 241

Query: 246 PITREPLRESQLVPNLAIKEAVRAYMDKHGWAYK 279
           PITRE +  + LVPNLAIKEAV AY++KH WAYK
Sbjct: 242 PITREKIDPANLVPNLAIKEAVAAYLEKHVWAYK 275

Has E3 ubiquitin-protein ligase activity and may target misfolded substrates towards proteasomal degradation. Regulates the activity of some serine/threonine-protein phosphatases by E3 ubiquitin-protein ligase activity. Required for responses to biotic and abiotic stresses such as auxin, abscisic acid (ABA), low and high temperature and darkness, probably through the activation of serine/threonine-protein phosphatase and the subsequent modification of the plasma membrane composition. Regulates the chloroplastic Clp proteolytic activity in response to stresses. Ubiquitylates FtsH1, a component of the chloroplast FtsH protease, and affects protein degradation in chloroplasts. Mediates plastid precursor degradation to prevent cytosolic precursor accumulation, together with the molecular chaperone HSC70-4. Mediates ubiquitination of transit peptides and thereby led to their degradation through the ubiquitin-proteasome system.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q5ZHY5|CHIP_CHICK STIP1 homology and U box-containing protein 1 OS=Gallus gallus GN=STUB1 PE=2 SV=1

 Score =  181 bits (460), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 106/278 (38%), Positives = 154/278 (55%), Gaps = 18/278 (6%)

Query: 14  AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73
           A++ +  GN  F   +Y  A  AY  AI   P V +Y+TNRALC+LK     K  ADC++
Sbjct: 36  AQEHKEQGNRLFGGRKYPEAAAAYGRAINRNPLVAVYYTNRALCYLKMQQHDKALADCKR 95

Query: 74  AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAK 133
           A++LD  SVK H+ LGQ  ++   Y + I  L++A NL +  +      +DI   L  AK
Sbjct: 96  ALELDGQSVKAHFFLGQCQMEMENYDEAIANLQRAYNLAKEQRLN--FGDDIPSALRIAK 153

Query: 134 YLLWEQESSKR---SWELQSL--------KE----ACEAALEEKHVLDISRKEGFLDEAS 178
              W     KR     EL S         KE     C  A +E++V D SR    L    
Sbjct: 154 KKRWNSIEEKRINQENELHSYLTRLIMAEKERELAECRKAQQEENV-DESRGRVQLAGIE 212

Query: 179 STHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHL 238
           + H K +  + ++F +  E     ++PDYLC KI+ ++ R+P ITPSG+TY+R  I +HL
Sbjct: 213 AKHDKYLADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHL 272

Query: 239 DKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGW 276
            +VG FDP+TR PL + QL+PNLA+KE + A++ ++GW
Sbjct: 273 QRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFISENGW 310

E3 ubiquitin-protein ligase which targets misfolded chaperone substrates towards proteasomal degradation. Ubiquitinates NOS1 in concert with Hsp70 and Hsp40. Mediates polyubiquitination of DNA polymerase beta (POLB), thereby playing a role in base-excision repair: catalyzes polyubiquitination by amplifying the HUWE1/ARF-BP1-dependent monoubiquitination and leading to POLB-degradation by the proteasome. Mediates polyubiquitination of CYP3A4. May ubiquitinate EPHA2 and regulate the receptor stability and activity through proteasomal degradation.

Gallus gallus (taxid: 9031)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9UNE7|CHIP_HUMAN E3 ubiquitin-protein ligase CHIP OS=Homo sapiens GN=STUB1 PE=1 SV=2

 Score =  175 bits (443), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 104/276 (37%), Positives = 154/276 (55%), Gaps = 15/276 (5%)

Query: 14  AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73
           A++L+  GN  F   +Y  A   Y  AIT  P V +Y+TNRALC+LK     +  ADCR+
Sbjct: 26  AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQHEQALADCRR 85

Query: 74  AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAK 133
           A++LD  SVK H+ LGQ  L+   Y + I  L++A +L +  +      +DI   L  AK
Sbjct: 86  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN--FGDDIPSALRIAK 143

Query: 134 YLLWEQESSKR---SWELQSLKEACEAALEEKHVLDISRK-EGFLDEA---------SST 180
              W     +R     EL S      AA  E+ + +  R  EG  D++          + 
Sbjct: 144 KKRWNSIEERRIHQESELHSYLSRLIAAERERELEECQRNHEGDEDDSHVRAQQACIEAK 203

Query: 181 HLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK 240
           H K M  + ++F +  E     ++PDYLC KI+ ++ R+P ITPSG+TY+R  I +HL +
Sbjct: 204 HDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR 263

Query: 241 VGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGW 276
           VG FDP+TR PL + QL+PNLA+KE + A++ ++GW
Sbjct: 264 VGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 299

E3 ubiquitin-protein ligase which targets misfolded chaperone substrates towards proteasomal degradation. Collaborates with ATXN3 in the degradation of misfolded chaperone substrates: ATXN3 restricting the length of ubiquitin chain attached to STUB1/CHIP substrates and preventing further chain extension. Ubiquitinates NOS1 in concert with Hsp70 and Hsp40. Modulates the activity of several chaperone complexes, including Hsp70, Hsc70 and Hsp90. Mediates transfer of non-canonical short ubiquitin chains to HSPA8 that have no effect on HSPA8 degradation. Mediates polyubiquitination of DNA polymerase beta (POLB) at 'Lys-41', 'Lys-61' and 'Lys-81', thereby playing a role in base-excision repair: catalyzes polyubiquitination by amplifying the HUWE1/ARF-BP1-dependent monoubiquitination and leading to POLB-degradation by the proteasome. Mediates polyubiquitination of CYP3A4. Ubiquitinates EPHA2 and may regulate the receptor stability and activity through proteasomal degradation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9WUD1|CHIP_MOUSE STIP1 homology and U box-containing protein 1 OS=Mus musculus GN=Stub1 PE=1 SV=1

 Score =  174 bits (442), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 104/276 (37%), Positives = 153/276 (55%), Gaps = 15/276 (5%)

Query: 14  AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73
           A++L+  GN  F   +Y  A   Y  AIT  P V +Y+TNRALC+LK     +  ADCR+
Sbjct: 27  AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 86

Query: 74  AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAK 133
           A++LD  SVK H+ LGQ  L+   Y + I  L++A +L +  +      +DI   L  AK
Sbjct: 87  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN--FGDDIPSALRIAK 144

Query: 134 YLLWEQESSKR---SWELQSLKEACEAALEEKHVLDISRK-EGFLDEA---------SST 180
              W     +R     EL S      AA  E+ + +  R  EG  D+           + 
Sbjct: 145 KKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAK 204

Query: 181 HLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK 240
           H K M  + ++F +  E     ++PDYLC KI+ ++ R+P ITPSG+TY+R  I +HL +
Sbjct: 205 HDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR 264

Query: 241 VGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGW 276
           VG FDP+TR PL + QL+PNLA+KE + A++ ++GW
Sbjct: 265 VGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 300

E3 ubiquitin-protein ligase which targets misfolded chaperone substrates towards proteasomal degradation. Collaborates with ATXN3 in the degradation of misfolded chaperone substrates: ATXN3 restricting the length of ubiquitin chain attached to STUB1/CHIP substrates and preventing further chain extension. Ubiquitinates NOS1 in concert with Hsp70 and Hsp40. Modulates the activity of several chaperone complexes, including Hsp70, Hsc70 and Hsp90. Mediates transfer of non-canonical short ubiquitin chains to HSPA8 that have no effect on HSPA8 degradation. Mediates polyubiquitination of DNA polymerase beta (POLB) at 'Lys-41', 'Lys-61' and 'Lys-81', thereby playing a role in base-excision repair: catalyzes polyubiquitination by amplifying the HUWE1/ARF-BP1-dependent monoubiquitination and leading to POLB-degradation by the proteasome. Mediates polyubiquitination of CYP3A4. Ubiquitinates EPHA2 and may regulate the receptor stability and activity through proteasomal degradation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8VD33|SGTB_MOUSE Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Mus musculus GN=Sgtb PE=2 SV=1

 Score = 74.3 bits (181), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 58/99 (58%)

Query: 13  QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72
           +A+QL+ +GN +  ++ Y AA+D YT+AI L PN  +Y+ NRA    K + +T    DC 
Sbjct: 84  KADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCE 143

Query: 73  KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           KAI +D    K +  +G  L   N++ + +   +KAL+L
Sbjct: 144 KAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDL 182

Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity.

Mus musculus (taxid: 10090)

>sp|Q80W98|SGTB_RAT Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Rattus norvegicus GN=Sgtb PE=1 SV=1

 Score = 74.3 bits (181), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 58/99 (58%)

Query: 13  QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72
           +A+QL+ +GN +  ++ Y AA+D YT+AI L PN  +Y+ NRA    K + +T    DC 
Sbjct: 84  KADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCE 143

Query: 73  KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           KAI +D    K +  +G  L   N++ + +   +KAL+L
Sbjct: 144 KAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDL 182

Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity.

Rattus norvegicus (taxid: 10116)

>sp|Q96EQ0|SGTB_HUMAN Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens GN=SGTB PE=1 SV=1

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 57/99 (57%)

Query: 13  QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72
           +A+QL+ +GN +  ++ Y AA+D YT+AI L PN  +Y+ NRA    K   +T    DC 
Sbjct: 84  KADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCE 143

Query: 73  KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           KAI +D    K +  +G  L   N++ + +   +KAL+L
Sbjct: 144 KAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQKALDL 182

Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity.

Homo sapiens (taxid: 9606)

>sp|Q84XU2|PPP5_ARATH Serine/threonine-protein phosphatase 5 OS=Arabidopsis thaliana GN=PAPP5 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 52/99 (52%)

Query: 13  QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72
           +AE+ +   N  F   +Y +AID YT+AI L  N  +YW NRA  H K  ++     D  
Sbjct: 12  RAEEFKSQANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANRAFAHTKLEEYGSAIQDAS 71

Query: 73  KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           KAI++D    KG+Y  G   L   ++ D +K+ ++   L
Sbjct: 72  KAIEVDSRYSKGYYRRGAAYLAMGKFKDALKDFQQVKRL 110

Isoform 2 dephosphorylates phosphorylated phytochromes, with a preference toward Pfr forms, and enhances phytochrome-mediated photoresponses, probably by enhancing their stability and their binding affinity for light signal transducers such as NDPK2. Can use para-nitrophenylphosphate (pNPP) as substrate.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q99KD5|UN45A_MOUSE Protein unc-45 homolog A OS=Mus musculus GN=Unc45a PE=1 SV=2

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 7/117 (5%)

Query: 11  AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCP---NVPIYWTNRALCHLKRNDWTKV 67
           A  AEQLR +GN  F    Y  A+ AYT+A++L     +  I   NRA CHLK  D++K 
Sbjct: 18  ASSAEQLRKEGNELFKCGDYEGALTAYTQALSLGATPQDQAILHRNRAACHLKLEDYSKA 77

Query: 68  EADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVED 124
           E++  KAI+ D   VK  Y   Q L +       + +L++ ++L    +PK  + ++
Sbjct: 78  ESEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLKRCVSL----EPKNKVFQE 130

May act as co-chaperone for HSP90 (Potential). Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell (By similarity). May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Mus musculus (taxid: 10090)

>sp|Q9H3U1|UN45A_HUMAN Protein unc-45 homolog A OS=Homo sapiens GN=UNC45A PE=1 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 7/123 (5%)

Query: 11  AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--CP-NVPIYWTNRALCHLKRNDWTKV 67
           A   EQLR +GN  F    YG A+ AYT+A+ L   P +  +   NRA CHLK  D+ K 
Sbjct: 18  ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKA 77

Query: 68  EADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQ 127
           E +  KAI+ D   VK  Y   Q L +       + +L++ ++L    +PK  + ++  +
Sbjct: 78  ETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL----EPKNKVFQEALR 133

Query: 128 ELA 130
            + 
Sbjct: 134 NIG 136

Acts as co-chaperone for HSP90. Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell. May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
388508694	278	unknown [Lotus japonicus]	0.964	0.974	0.778	1e-125
356558963	278	PREDICTED: E3 ubiquitin-protein ligase C	0.967	0.978	0.779	1e-125
356504418	278	PREDICTED: E3 ubiquitin-protein ligase C	0.967	0.978	0.772	1e-123
147834652	276	hypothetical protein VITISV_000496 [Viti	0.960	0.978	0.762	1e-121
255644555	278	unknown [Glycine max]	0.967	0.978	0.761	1e-121
255585622	279	heat shock protein 70 (HSP70)-interactin	0.971	0.978	0.751	1e-121
224069892	287	predicted protein [Populus trichocarpa]	0.982	0.961	0.734	1e-119
449453294	281	PREDICTED: E3 ubiquitin-protein ligase C	0.967	0.967	0.742	1e-117
357513209	277	E3 ubiquitin-protein ligase CHIP [Medica	0.964	0.978	0.709	1e-113
217072282	277	unknown [Medicago truncatula] gi|3885154	0.964	0.978	0.705	1e-112

>gi|388508694|gb|AFK42413.1| unknown [Lotus japonicus]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/271 (77%), Positives = 240/271 (88%)

Query: 8   AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKV 67
           A  AKQAEQLR+DGN YF KDR+GAAIDAYTEAITLCPNVP+YWTNRALCHLKRN+W +V
Sbjct: 5   ATAAKQAEQLRIDGNSYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHLKRNNWERV 64

Query: 68  EADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQ 127
           E DCR+AIQLD +SVK HYL G  LLQ+ EYA GI+ELEKAL+LGRGA PKGY+VE+IWQ
Sbjct: 65  EEDCRRAIQLDSNSVKAHYLFGLVLLQKQEYAKGIRELEKALDLGRGANPKGYMVEEIWQ 124

Query: 128 ELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKEGFLDEASSTHLKQMEA 187
           ELA+AKY  WE+ S+KRSWELQSLK+ACE+AL+EKH LD S  EGF+D+A++THLKQ+EA
Sbjct: 125 ELAKAKYQEWERSSTKRSWELQSLKQACESALKEKHFLDGSDMEGFVDDATTTHLKQLEA 184

Query: 188 LRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPI 247
           L  VF KAAE D PAEVPDYLCCKITLDIF DPVITPSG+TYERAVILDHL KVG+FDP+
Sbjct: 185 LEGVFNKAAEADIPAEVPDYLCCKITLDIFHDPVITPSGLTYERAVILDHLQKVGRFDPV 244

Query: 248 TREPLRESQLVPNLAIKEAVRAYMDKHGWAY 278
           TREPL  SQLVPNLAIKEAV+A++D HGWAY
Sbjct: 245 TREPLDPSQLVPNLAIKEAVQAFLDTHGWAY 275

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558963|ref|XP_003547771.1| PREDICTED: E3 ubiquitin-protein ligase CHIP-like [Glycine max]

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/272 (77%), Positives = 240/272 (88%)

Query: 8   AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKV 67
           A  AKQAE+LR+DGN YF KDR+GAAIDAYTEAITLCPNVP+YWTNRALCHLKRNDW +V
Sbjct: 5   AAAAKQAEKLRIDGNTYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHLKRNDWERV 64

Query: 68  EADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQ 127
           E D RKAIQLD +SVK HY+LG  LLQR E A GIKELEKAL+LGRGA PKGY+VE+IWQ
Sbjct: 65  EEDSRKAIQLDSNSVKAHYMLGLALLQRQESAKGIKELEKALDLGRGANPKGYMVEEIWQ 124

Query: 128 ELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKEGFLDEASSTHLKQMEA 187
           ELA+AKYL WE+ SSKRSWELQSLKEACE+AL+EKH LD S+ EGF+D+A+++H +Q+EA
Sbjct: 125 ELAKAKYLEWERSSSKRSWELQSLKEACESALKEKHFLDYSQMEGFVDDATTSHSEQLEA 184

Query: 188 LRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPI 247
           L +VF  AAE D P EVPDYLCC+ITLDIF DPVITPSG+TYERAVIL+HL KVGKFDPI
Sbjct: 185 LERVFNTAAEADIPTEVPDYLCCRITLDIFHDPVITPSGLTYERAVILEHLQKVGKFDPI 244

Query: 248 TREPLRESQLVPNLAIKEAVRAYMDKHGWAYK 279
           TREPL  SQLVPNLAIKEAV A++DKHGWAYK
Sbjct: 245 TREPLDPSQLVPNLAIKEAVEAFLDKHGWAYK 276

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504418|ref|XP_003520993.1| PREDICTED: E3 ubiquitin-protein ligase CHIP-like [Glycine max]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/272 (77%), Positives = 238/272 (87%)

Query: 8   AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKV 67
           A  AKQAE+LR+DGN YF KDR+GAAIDAYTEAITLCPNVP+YWTNRALCHLKRNDW +V
Sbjct: 5   AAAAKQAEKLRIDGNTYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHLKRNDWERV 64

Query: 68  EADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQ 127
           E D RKAIQLD +SVK HY+LG  LLQR E   GIKELEKAL+LGRGA PKGY+VE+IWQ
Sbjct: 65  EEDSRKAIQLDSNSVKAHYILGLALLQRQESVKGIKELEKALDLGRGANPKGYMVEEIWQ 124

Query: 128 ELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKEGFLDEASSTHLKQMEA 187
           ELA+AKYL WE+ SSKRSWELQ LKEACE+AL+EKH LD S+ EGF+D+A+++  +Q+EA
Sbjct: 125 ELAKAKYLEWERLSSKRSWELQCLKEACESALKEKHFLDFSQMEGFVDDATTSQSEQLEA 184

Query: 188 LRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPI 247
           L +VF  AAE DTP EVPDYLCC+ITLDIF DPVITPSG+TYERAVIL+HL KVGKFDPI
Sbjct: 185 LERVFNTAAEADTPTEVPDYLCCRITLDIFHDPVITPSGLTYERAVILEHLQKVGKFDPI 244

Query: 248 TREPLRESQLVPNLAIKEAVRAYMDKHGWAYK 279
           TREPL  SQLVPNLAIKEAV A++DKHGWAYK
Sbjct: 245 TREPLDPSQLVPNLAIKEAVEAFLDKHGWAYK 276

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834652|emb|CAN63106.1| hypothetical protein VITISV_000496 [Vitis vinifera]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/270 (76%), Positives = 237/270 (87%)

Query: 11  AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD 70
           AKQAEQLRLDGN YF K R+ AAIDAYTEAITLCPNVPIYWTNRAL H KRN+WT+VE D
Sbjct: 6   AKQAEQLRLDGNTYFKKGRFAAAIDAYTEAITLCPNVPIYWTNRALGHRKRNNWTRVEED 65

Query: 71  CRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELA 130
           CR+AIQLD +SVK HY+LG  LLQR EYA+G+KELEKAL+LGRGA PKGY+VE+IWQELA
Sbjct: 66  CRRAIQLDSNSVKAHYMLGLALLQREEYAEGVKELEKALDLGRGANPKGYMVEEIWQELA 125

Query: 131 RAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKEGFLDEASSTHLKQMEALRQ 190
           +AKY+ WE ES+KRSWELQ+LKEACE AL+EKH+ D S  EGFLDE   ++L+Q+EAL +
Sbjct: 126 KAKYMEWEHESTKRSWELQTLKEACETALKEKHLFDSSELEGFLDEIPRSNLEQLEALDR 185

Query: 191 VFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITRE 250
           VFR AAE D P +VPDYLCCKITLDIFRDPVI PSG+TYER V+LDHL+KVGKFDPITRE
Sbjct: 186 VFRIAAEADLPTDVPDYLCCKITLDIFRDPVIAPSGLTYEREVLLDHLEKVGKFDPITRE 245

Query: 251 PLRESQLVPNLAIKEAVRAYMDKHGWAYKA 280
           PL +SQLV NLAIKEAV+A++D+HGWAYK 
Sbjct: 246 PLSQSQLVSNLAIKEAVQAFLDEHGWAYKT 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255644555|gb|ACU22780.1| unknown [Glycine max]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/272 (76%), Positives = 236/272 (86%)

Query: 8   AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKV 67
           A  AKQAE+LR+DGN YF KDR+GAAIDAYTEAITLCPNVP+YWTNRALCHLKRNDW +V
Sbjct: 5   AAAAKQAEKLRIDGNTYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHLKRNDWERV 64

Query: 68  EADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQ 127
           E D RKAIQLD +SVK HY+LG  LLQR E   GIKELEKAL+LGRGA PKGY+VE+IWQ
Sbjct: 65  EEDSRKAIQLDSNSVKAHYILGLALLQRQESVKGIKELEKALDLGRGANPKGYMVEEIWQ 124

Query: 128 ELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKEGFLDEASSTHLKQMEA 187
           ELA+AKYL WE+ SSKRSWELQ LKEACE+AL+EK+ LD S+ EGF+D+A+++  +Q+EA
Sbjct: 125 ELAKAKYLEWERLSSKRSWELQCLKEACESALKEKYFLDFSQMEGFVDDATTSQSEQLEA 184

Query: 188 LRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPI 247
           L +VF  AAE DTP EVPDYLCC+ITLDIF DPVITPSG+TYERAVIL+HL K GKFDPI
Sbjct: 185 LERVFNTAAEADTPTEVPDYLCCRITLDIFHDPVITPSGLTYERAVILEHLQKGGKFDPI 244

Query: 248 TREPLRESQLVPNLAIKEAVRAYMDKHGWAYK 279
           TREPL  SQ VPNLAIKEAV A++DKHGWAYK
Sbjct: 245 TREPLDPSQSVPNLAIKEAVEAFLDKHGWAYK 276

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585622|ref|XP_002533498.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis] gi|223526642|gb|EEF28885.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/274 (75%), Positives = 238/274 (86%), Gaps = 1/274 (0%)

Query: 7   LAGVA-KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWT 65
           + G A KQAE+LR+DGN YF +DR+GAAIDAYTEAITLCPNVP+YWTNRALCH KRNDW 
Sbjct: 2   VGGAAFKQAEKLRIDGNTYFKRDRFGAAIDAYTEAITLCPNVPVYWTNRALCHRKRNDWR 61

Query: 66  KVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDI 125
           KVE DCR+AIQLD++S K HY+LG  LLQ+ E A+G+KEL+KAL+LGRGA  KGY+VE+I
Sbjct: 62  KVEQDCRRAIQLDNNSFKAHYMLGLALLQKGELAEGVKELQKALDLGRGADGKGYMVEEI 121

Query: 126 WQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKEGFLDEASSTHLKQM 185
           WQELA+AKY+ WEQ S+KRSWELQ+LKEACE AL EK  LD S+ EGFLD+  ++H KQ+
Sbjct: 122 WQELAKAKYMEWEQASTKRSWELQNLKEACENALREKSFLDNSQTEGFLDDMIASHSKQL 181

Query: 186 EALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFD 245
           E L  VF+KAAEDDTP EVPDYLCCKITLDIFRDPVITPSG++YERAVILDHL KVGKFD
Sbjct: 182 EDLGHVFKKAAEDDTPTEVPDYLCCKITLDIFRDPVITPSGISYERAVILDHLQKVGKFD 241

Query: 246 PITREPLRESQLVPNLAIKEAVRAYMDKHGWAYK 279
           P+TREPL  SQLV NLAIKEAV AY++KHGWAYK
Sbjct: 242 PVTREPLDPSQLVSNLAIKEAVEAYLNKHGWAYK 275

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069892|ref|XP_002303074.1| predicted protein [Populus trichocarpa] gi|222844800|gb|EEE82347.1| predicted protein [Populus trichocarpa]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/279 (73%), Positives = 240/279 (86%), Gaps = 3/279 (1%)

Query: 5   AGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDW 64
           + L+   K+A++LR +GN  FSKDR+ AAIDAYT AITLCP VP+YWTNRALCH KRNDW
Sbjct: 6   SALSDEEKRADKLRQEGNICFSKDRFQAAIDAYTAAITLCPKVPVYWTNRALCHRKRNDW 65

Query: 65  TKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVED 124
           T+VE D RKAIQLDH SVK HY+LG  LLQ+ EY++G+KELEKAL+LGRGA P GY+VE+
Sbjct: 66  TRVEEDSRKAIQLDHYSVKAHYMLGLALLQKQEYSEGVKELEKALDLGRGANPNGYMVEE 125

Query: 125 IWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKEGFLDE---ASSTH 181
           IW+ELA+AKYL WE+ES++RSWELQSLKEACE AL+EKH LD S  EGFLD+   +  +H
Sbjct: 126 IWEELAKAKYLEWEEESTQRSWELQSLKEACERALKEKHFLDDSETEGFLDDPIVSIVSH 185

Query: 182 LKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKV 241
           L+Q+E L QVF+KAAEDDTP+EVPDYLCCKITLDI RDPVITPSGV+YERAV+LDHL+KV
Sbjct: 186 LQQLELLGQVFQKAAEDDTPSEVPDYLCCKITLDILRDPVITPSGVSYERAVLLDHLEKV 245

Query: 242 GKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWAYKA 280
           G FDP+TREPL  SQLVPNLAIKEAV AY+DKHGWAYK 
Sbjct: 246 GNFDPVTREPLEPSQLVPNLAIKEAVHAYLDKHGWAYKT 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453294|ref|XP_004144393.1| PREDICTED: E3 ubiquitin-protein ligase CHIP-like [Cucumis sativus] gi|449506077|ref|XP_004162646.1| PREDICTED: E3 ubiquitin-protein ligase CHIP-like [Cucumis sativus]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/272 (74%), Positives = 229/272 (84%)

Query: 7   LAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTK 66
           L+G AKQAE LR DGN+YF K R GAAI+AYTEAITLCPNVP+Y TNRALCH KRNDW K
Sbjct: 7   LSGPAKQAEILRKDGNHYFQKGRIGAAIEAYTEAITLCPNVPVYLTNRALCHRKRNDWNK 66

Query: 67  VEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIW 126
           VE DCR+AIQLD  SVK HY+LG  LLQ  EY +GIK LEKAL+LGRG  PK YIVE+IW
Sbjct: 67  VEEDCRRAIQLDSSSVKAHYMLGLALLQNKEYPEGIKHLEKALDLGRGENPKSYIVEEIW 126

Query: 127 QELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKEGFLDEASSTHLKQME 186
           QELA+AKY  WEQ S++RSWELQ+LKEACEAALE+K+ LD S  EGF+DEA   H KQ++
Sbjct: 127 QELAKAKYREWEQASTERSWELQTLKEACEAALEQKYFLDQSELEGFVDEADIAHRKQLK 186

Query: 187 ALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDP 246
           +LR VF K  E D+P+EVPDYLCCKITLDI RDPVITPSGVTYERAVILDH +KVG FDP
Sbjct: 187 SLRSVFEKVTEADSPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFNKVGNFDP 246

Query: 247 ITREPLRESQLVPNLAIKEAVRAYMDKHGWAY 278
           ITRE L ESQL+PNLAIKEAV++++DKHGWAY
Sbjct: 247 ITRELLNESQLIPNLAIKEAVQSFLDKHGWAY 278

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513209|ref|XP_003626893.1| E3 ubiquitin-protein ligase CHIP [Medicago truncatula] gi|355520915|gb|AET01369.1| E3 ubiquitin-protein ligase CHIP [Medicago truncatula]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/272 (70%), Positives = 230/272 (84%), Gaps = 1/272 (0%)

Query: 8   AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKV 67
           A   +QAE LR DGN YF K+R+ AAIDAYTEAITLCPNVP+Y+TNRALCHLKRN+W +V
Sbjct: 5   ASAMRQAELLRNDGNNYFKKNRFNAAIDAYTEAITLCPNVPVYFTNRALCHLKRNEWERV 64

Query: 68  EADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQ 127
           E D R+AIQLD  SVK HY+LG  LLQ+ E+  GI+EL+KAL+LGRGA PKGY+VE+IWQ
Sbjct: 65  EEDSRRAIQLDSHSVKAHYMLGLALLQKQEHTKGIRELQKALDLGRGANPKGYMVEEIWQ 124

Query: 128 ELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKEGFLDEASSTHLKQMEA 187
           E A+AKY  WE+ SS+RSWELQ+LKEAC++AL+EKH L  S  EGF+D+A+++HLKQ+EA
Sbjct: 125 EFAKAKYKEWERSSSQRSWELQNLKEACKSALKEKHFLG-SEMEGFVDDATTSHLKQLEA 183

Query: 188 LRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPI 247
           + +VF KAA+DD P EVPD+LCC+ITLDIF DPVITPSG TYERAVILDHL KVG+FDPI
Sbjct: 184 VERVFNKAADDDIPTEVPDHLCCRITLDIFHDPVITPSGHTYERAVILDHLQKVGEFDPI 243

Query: 248 TREPLRESQLVPNLAIKEAVRAYMDKHGWAYK 279
           TREPL  SQLV NLAI+EAV  Y+D HGWAYK
Sbjct: 244 TREPLDPSQLVSNLAIREAVHEYLDTHGWAYK 275

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072282|gb|ACJ84501.1| unknown [Medicago truncatula] gi|388515481|gb|AFK45802.1| unknown [Medicago truncatula]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/272 (70%), Positives = 229/272 (84%), Gaps = 1/272 (0%)

Query: 8   AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKV 67
           A   +QAE LR DGN YF K+R+ AAIDAYTEAITLCPNVP+Y+TNRALCHLKRN+W +V
Sbjct: 5   ASAMRQAELLRNDGNNYFKKNRFNAAIDAYTEAITLCPNVPVYFTNRALCHLKRNEWERV 64

Query: 68  EADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQ 127
           E D R+AIQLD  SVK HY+LG  LLQ+ E+  GI+EL+KAL+LGRGA PKGY+VE+IWQ
Sbjct: 65  EEDSRRAIQLDSHSVKAHYMLGLALLQKQEHTKGIRELQKALDLGRGANPKGYMVEEIWQ 124

Query: 128 ELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKEGFLDEASSTHLKQMEA 187
           E A+AKY  WE+ SS+RSWELQ+LKEAC++AL+EKH L  S  E F+D+A+++HLKQ+EA
Sbjct: 125 EFAKAKYKEWERSSSQRSWELQNLKEACKSALKEKHFLG-SEMERFVDDATTSHLKQLEA 183

Query: 188 LRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPI 247
           + +VF KAA+DD P EVPD+LCC+ITLDIF DPVITPSG TYERAVILDHL KVG+FDPI
Sbjct: 184 VERVFNKAADDDIPTEVPDHLCCRITLDIFHDPVITPSGHTYERAVILDHLQKVGEFDPI 243

Query: 248 TREPLRESQLVPNLAIKEAVRAYMDKHGWAYK 279
           TREPL  SQLV NLAI+EAV  Y+D HGWAYK
Sbjct: 244 TREPLDPSQLVSNLAIREAVHEYLDTHGWAYK 275

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
TAIR|locus:2079716	278	CHIP "carboxyl terminus of HSC	0.971	0.982	0.638	2.3e-94
ZFIN|ZDB-GENE-030131-2963	287	stub1 "STIP1 homology and U-Bo	0.939	0.919	0.370	7.1e-45
UNIPROTKB|E1B7G3	319	STUB1 "Uncharacterized protein	0.967	0.852	0.366	5.7e-43
UNIPROTKB|F1MUH4	302	STUB1 "Uncharacterized protein	0.967	0.900	0.366	5.7e-43
UNIPROTKB|Q9UNE7	303	STUB1 "E3 ubiquitin-protein li	0.928	0.861	0.365	1.2e-42
UNIPROTKB|F1RG35	303	STUB1 "Uncharacterized protein	0.928	0.861	0.365	1.2e-42
MGI|MGI:1891731	304	Stub1 "STIP1 homology and U-Bo	0.928	0.858	0.365	1.5e-42
RGD|1306167	304	Stub1 "STIP1 homology and U-bo	0.928	0.858	0.365	1.5e-42
UNIPROTKB|Q5ZHY5	314	STUB1 "STIP1 homology and U bo	0.928	0.831	0.357	6.6e-42
FB|FBgn0027052	289	CHIP "CHIP" [Drosophila melano	0.925	0.899	0.351	6.8e-40

TAIR|locus:2079716 CHIP "carboxyl terminus of HSC70-interacting protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
 Identities = 175/274 (63%), Positives = 214/274 (78%)

Query:     7 LAGVAK-QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWT 65
             + GVA   AE+L+ DGN  F K+R+GAAIDAYTEAI L PNVP YWTNRALCH+KR DWT
Sbjct:     2 VTGVASAMAERLKEDGNNCFKKERFGAAIDAYTEAIALSPNVPAYWTNRALCHMKRKDWT 61

Query:    66 KVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDI 125
             KVE DCRKAIQL H+SVK HY+LG  LLQ+ E+ +G+KEL++AL+LGR + P GY+VE+I
Sbjct:    62 KVEEDCRKAIQLVHNSVKAHYMLGLALLQKKEFTNGVKELQRALDLGRCSNPTGYMVEEI 121

Query:   126 WQELARAKYLLWEQESSKRSWELQSXXXXXXXXXXXXHVLDISRKEGFLDEASSTHLKQM 185
             W+EL++AKY+ WE  S+ RSWEL S              LD+SR E   DEA + H +++
Sbjct:   122 WEELSKAKYMEWELVSAMRSWELNSLKETCEAALNQQRALDMSRTEESSDEAYTAHTERL 181

Query:   186 EALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFD 245
             +AL +VF+KAAE+D P EVPDYLCC ITL+IFRDPVI+PSGVTYERA IL+HL KVGKFD
Sbjct:   182 KALERVFKKAAEEDKPTEVPDYLCCNITLEIFRDPVISPSGVTYERAAILEHLKKVGKFD 241

Query:   246 PITREPLRESQLVPNLAIKEAVRAYMDKHGWAYK 279
             PITRE +  + LVPNLAIKEAV AY++KH WAYK
Sbjct:   242 PITREKIDPANLVPNLAIKEAVAAYLEKHVWAYK 275

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0009266 "response to temperature stimulus" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0051087 "chaperone binding" evidence=IPI

GO:0007165 "signal transduction" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

ZFIN|ZDB-GENE-030131-2963 stub1 "STIP1 homology and U-Box containing protein 1" [Danio rerio (taxid:7955)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 102/275 (37%), Positives = 153/275 (55%)

Query:    11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD 70
             +  A++L+  GN  F   +Y  A+  Y++AI   P+V +Y+TNRALC++K   + K  AD
Sbjct:    11 SSSAQELKEQGNRLFLSRKYQEAVTCYSKAINRNPSVAVYYTNRALCYVKLQQYDKALAD 70

Query:    71 CRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELA 130
             C+ A++LD  SVK H+ LGQ  L+   Y + I  L++A NL +  +      +DI   L 
Sbjct:    71 CKHALELDSQSVKAHFFLGQCQLELENYEEAIGNLQRAYNLAKEQRLN--FGDDIPSALR 128

Query:   131 RAKYLLWEQESSKR-SWE------LQSXXXXXXXXXXXXHVL--DISRKEGFLDEASSTH 181
              AK   W     KR S E      L               V   D S+  G + +  S H
Sbjct:   129 IAKKKRWNSIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDDSQNGGDISKMKSKH 188

Query:   182 LKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKV 241
              K +  + ++F +  E     E+PDYLC KI+ ++ R+P ITPSG+TY+R  I +HL +V
Sbjct:   189 DKYLMDMDELFSQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV 248

Query:   242 GKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGW 276
             G FDP+TR PL + QL+PNLA+KE + A++ ++GW
Sbjct:   249 GHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGW 283

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0030544 "Hsp70 protein binding" evidence=ISS

GO:0030911 "TPR domain binding" evidence=ISS

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISS

GO:0046332 "SMAD binding" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0051879 "Hsp90 protein binding" evidence=ISS

GO:0030579 "ubiquitin-dependent SMAD protein catabolic process" evidence=ISS

GO:0031943 "regulation of glucocorticoid metabolic process" evidence=ISS

UNIPROTKB|E1B7G3 STUB1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 106/289 (36%), Positives = 155/289 (53%)

Query:     3 LEAGLAGVAKQ--AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLK 60
             L AG A   K   A++L+  GN  F   +Y  A   Y  AIT  P V +Y+TNRALC+LK
Sbjct:    13 LGAGGASPEKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK 72

Query:    61 RNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGY 120
                  +  ADCR+A++LD  SVK H+ LGQ  L+   Y + I  L++A NL +  +    
Sbjct:    73 MQQHEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYNLAKEQRLN-- 130

Query:   121 IVEDIWQELARAKYLLWEQESSKRSW---ELQSXXXXXXXXXXXXHVLDISRK-EGFLDE 176
               +DI   L  AK   W     +R     EL S             + +  R  EG  D+
Sbjct:   131 FGDDIPSALRIAKKKRWNSIEERRIHQENELHSYLTRLIVAERERELEECQRNHEGDEDD 190

Query:   177 A---------SSTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGV 227
             +          + H K +  + ++F +  E     ++PDYLC KI+ ++ R+P ITPSG+
Sbjct:   191 SHIRAQQACIEAKHDKYLADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGI 250

Query:   228 TYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGW 276
             TY+R  I +HL +VG FDP+TR PL + QL+PNLA+KE + A++ ++GW
Sbjct:   251 TYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 299

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=IEA

GO:0071218 "cellular response to misfolded protein" evidence=IEA

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0051787 "misfolded protein binding" evidence=IEA

GO:0046332 "SMAD binding" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042405 "nuclear inclusion body" evidence=IEA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031943 "regulation of glucocorticoid metabolic process" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030911 "TPR domain binding" evidence=IEA

GO:0030579 "ubiquitin-dependent SMAD protein catabolic process" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0019900 "kinase binding" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

UNIPROTKB|F1MUH4 STUB1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 106/289 (36%), Positives = 155/289 (53%)

Query:     3 LEAGLAGVAKQ--AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLK 60
             L AG A   K   A++L+  GN  F   +Y  A   Y  AIT  P V +Y+TNRALC+LK
Sbjct:    13 LGAGGASPEKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK 72

Query:    61 RNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGY 120
                  +  ADCR+A++LD  SVK H+ LGQ  L+   Y + I  L++A NL +  +    
Sbjct:    73 MQQHEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYNLAKEQRLN-- 130

Query:   121 IVEDIWQELARAKYLLWEQESSKRSW---ELQSXXXXXXXXXXXXHVLDISRK-EGFLDE 176
               +DI   L  AK   W     +R     EL S             + +  R  EG  D+
Sbjct:   131 FGDDIPSALRIAKKKRWNSIEERRIHQENELHSYLTRLIVAERERELEECQRNHEGDEDD 190

Query:   177 A---------SSTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGV 227
             +          + H K +  + ++F +  E     ++PDYLC KI+ ++ R+P ITPSG+
Sbjct:   191 SHIRAQQACIEAKHDKYLADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGI 250

Query:   228 TYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGW 276
             TY+R  I +HL +VG FDP+TR PL + QL+PNLA+KE + A++ ++GW
Sbjct:   251 TYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 299

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

UNIPROTKB|Q9UNE7 STUB1 "E3 ubiquitin-protein ligase CHIP" [Homo sapiens (taxid:9606)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 101/276 (36%), Positives = 150/276 (54%)

Query:    14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73
             A++L+  GN  F   +Y  A   Y  AIT  P V +Y+TNRALC+LK     +  ADCR+
Sbjct:    26 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQHEQALADCRR 85

Query:    74 AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAK 133
             A++LD  SVK H+ LGQ  L+   Y + I  L++A +L +  +      +DI   L  AK
Sbjct:    86 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN--FGDDIPSALRIAK 143

Query:   134 YLLWEQESSKR---SWELQSXXXXXXXXXXXXHVLDISRK-EGFLDEA---------SST 180
                W     +R     EL S             + +  R  EG  D++          + 
Sbjct:   144 KKRWNSIEERRIHQESELHSYLSRLIAAERERELEECQRNHEGDEDDSHVRAQQACIEAK 203

Query:   181 HLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK 240
             H K M  + ++F +  E     ++PDYLC KI+ ++ R+P ITPSG+TY+R  I +HL +
Sbjct:   204 HDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR 263

Query:   241 VGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGW 276
             VG FDP+TR PL + QL+PNLA+KE + A++ ++GW
Sbjct:   264 VGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 299

GO:0006281 "DNA repair" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA;IMP;TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0000209 "protein polyubiquitination" evidence=IDA;IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=ISS

GO:0070534 "protein K63-linked ubiquitination" evidence=IDA

GO:0000151 "ubiquitin ligase complex" evidence=IDA

GO:0019899 "enzyme binding" evidence=IPI

GO:0051879 "Hsp90 protein binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=IDA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IDA

GO:0031943 "regulation of glucocorticoid metabolic process" evidence=IDA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0030911 "TPR domain binding" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=TAS

GO:0051604 "protein maturation" evidence=TAS

GO:0031371 "ubiquitin conjugating enzyme complex" evidence=TAS

GO:0030579 "ubiquitin-dependent SMAD protein catabolic process" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0046332 "SMAD binding" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0042405 "nuclear inclusion body" evidence=IDA

GO:0051787 "misfolded protein binding" evidence=IDA

GO:0071218 "cellular response to misfolded protein" evidence=IDA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IDA

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=IDA

GO:0019900 "kinase binding" evidence=IPI

UNIPROTKB|F1RG35 STUB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 101/276 (36%), Positives = 149/276 (53%)

Query:    14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73
             A++L+  GN  F   +Y  A   Y  AIT  P V +Y+TNRALC+LK     +  ADCR+
Sbjct:    26 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQHEQALADCRR 85

Query:    74 AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAK 133
             A++LD  SVK H+ LGQ  L+   Y + I  L++A NL +  +      +DI   L  AK
Sbjct:    86 ALELDSQSVKAHFFLGQCQLEMESYDEAIANLQRAYNLAKEQRLN--FGDDIPSALRIAK 143

Query:   134 YLLWEQESSKRSW---ELQSXXXXXXXXXXXXHVLDISRK-EGFLDEA---------SST 180
                W     +R     EL S             + +  R  EG  D+           + 
Sbjct:   144 KKRWNSIEERRIHQENELHSYLTRLIVAERERELEECQRNHEGEEDDGHIRAQQACIEAK 203

Query:   181 HLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK 240
             H K +  + ++F +  E     ++PDYLC KI+ ++ R+P ITPSG+TY+R  I +HL +
Sbjct:   204 HDKYLADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR 263

Query:   241 VGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGW 276
             VG FDP+TR PL + QL+PNLA+KE + A++ ++GW
Sbjct:   264 VGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 299

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=IEA

GO:0071218 "cellular response to misfolded protein" evidence=IEA

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0051787 "misfolded protein binding" evidence=IEA

GO:0046332 "SMAD binding" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042405 "nuclear inclusion body" evidence=IEA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031943 "regulation of glucocorticoid metabolic process" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030911 "TPR domain binding" evidence=IEA

GO:0030579 "ubiquitin-dependent SMAD protein catabolic process" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0019900 "kinase binding" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

MGI|MGI:1891731 Stub1 "STIP1 homology and U-Box containing protein 1" [Mus musculus (taxid:10090)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 101/276 (36%), Positives = 149/276 (53%)

Query:    14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73
             A++L+  GN  F   +Y  A   Y  AIT  P V +Y+TNRALC+LK     +  ADCR+
Sbjct:    27 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 86

Query:    74 AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAK 133
             A++LD  SVK H+ LGQ  L+   Y + I  L++A +L +  +      +DI   L  AK
Sbjct:    87 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN--FGDDIPSALRIAK 144

Query:   134 YLLWEQESSKR---SWELQSXXXXXXXXXXXXHVLDISRK-EGFLDEA---------SST 180
                W     +R     EL S             + +  R  EG  D+           + 
Sbjct:   145 KKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAK 204

Query:   181 HLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK 240
             H K M  + ++F +  E     ++PDYLC KI+ ++ R+P ITPSG+TY+R  I +HL +
Sbjct:   205 HDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR 264

Query:   241 VGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGW 276
             VG FDP+TR PL + QL+PNLA+KE + A++ ++GW
Sbjct:   265 VGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 300

GO:0000151 "ubiquitin ligase complex" evidence=ISO

GO:0000209 "protein polyubiquitination" evidence=ISO;IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0006281 "DNA repair" evidence=IEA

GO:0006457 "protein folding" evidence=TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISO;IMP

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0016874 "ligase activity" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

GO:0019900 "kinase binding" evidence=ISO

GO:0030544 "Hsp70 protein binding" evidence=ISO;ISS;TAS

GO:0030579 "ubiquitin-dependent SMAD protein catabolic process" evidence=ISO

GO:0030674 "protein binding, bridging" evidence=TAS

GO:0030911 "TPR domain binding" evidence=ISO;ISS

GO:0031072 "heat shock protein binding" evidence=TAS

GO:0031371 "ubiquitin conjugating enzyme complex" evidence=TAS

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO;ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0031943 "regulation of glucocorticoid metabolic process" evidence=ISO;ISS

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IDA

GO:0042405 "nuclear inclusion body" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;IMP

GO:0046332 "SMAD binding" evidence=ISO

GO:0051604 "protein maturation" evidence=TAS

GO:0051787 "misfolded protein binding" evidence=ISO

GO:0051865 "protein autoubiquitination" evidence=ISO

GO:0051879 "Hsp90 protein binding" evidence=ISO;ISS

GO:0070534 "protein K63-linked ubiquitination" evidence=ISO

GO:0071218 "cellular response to misfolded protein" evidence=ISO;IMP

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=ISO

RGD|1306167 Stub1 "STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 101/276 (36%), Positives = 149/276 (53%)

Query:    14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73
             A++L+  GN  F   +Y  A   Y  AIT  P V +Y+TNRALC+LK     +  ADCR+
Sbjct:    27 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 86

Query:    74 AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAK 133
             A++LD  SVK H+ LGQ  L+   Y + I  L++A +L +  +      +DI   L  AK
Sbjct:    87 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN--FGDDIPSALRIAK 144

Query:   134 YLLWEQESSKR---SWELQSXXXXXXXXXXXXHVLDISRK-EGFLDEA---------SST 180
                W     +R     EL S             + +  R  EG  D+           + 
Sbjct:   145 KKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGDEDDGHIRAQQACIEAK 204

Query:   181 HLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK 240
             H K M  + ++F +  E     ++PDYLC KI+ ++ R+P ITPSG+TY+R  I +HL +
Sbjct:   205 HDKYMADMNELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR 264

Query:   241 VGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGW 276
             VG FDP+TR PL + QL+PNLA+KE + A++ ++GW
Sbjct:   265 VGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 300

GO:0000151 "ubiquitin ligase complex" evidence=IEA;ISO

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA;ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0019900 "kinase binding" evidence=IEA;ISO

GO:0030544 "Hsp70 protein binding" evidence=IEA;ISO

GO:0030579 "ubiquitin-dependent SMAD protein catabolic process" evidence=IEA;ISO

GO:0030911 "TPR domain binding" evidence=IEA;ISO

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA;ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA;ISO

GO:0031943 "regulation of glucocorticoid metabolic process" evidence=IEA;ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA;ISO

GO:0042405 "nuclear inclusion body" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0046332 "SMAD binding" evidence=IEA;ISO

GO:0051787 "misfolded protein binding" evidence=IEA;ISO

GO:0051865 "protein autoubiquitination" evidence=IEA;ISO

GO:0051879 "Hsp90 protein binding" evidence=IEA;ISO

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA;ISO

GO:0071218 "cellular response to misfolded protein" evidence=IEA;ISO

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=IEA;ISO

UNIPROTKB|Q5ZHY5 STUB1 "STIP1 homology and U box-containing protein 1" [Gallus gallus (taxid:9031)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 99/277 (35%), Positives = 151/277 (54%)

Query:    14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73
             A++ +  GN  F   +Y  A  AY  AI   P V +Y+TNRALC+LK     K  ADC++
Sbjct:    36 AQEHKEQGNRLFGGRKYPEAAAAYGRAINRNPLVAVYYTNRALCYLKMQQHDKALADCKR 95

Query:    74 AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAK 133
             A++LD  SVK H+ LGQ  ++   Y + I  L++A NL +  +      +DI   L  AK
Sbjct:    96 ALELDGQSVKAHFFLGQCQMEMENYDEAIANLQRAYNLAKEQRLN--FGDDIPSALRIAK 153

Query:   134 YLLWEQESSKR---SWELQSXXXXXXXXXXXXHVLDI--SRKEGFLDEA---------SS 179
                W     KR     EL S             + +   +++E  +DE+          +
Sbjct:   154 KKRWNSIEEKRINQENELHSYLTRLIMAEKERELAECRKAQQEENVDESRGRVQLAGIEA 213

Query:   180 THLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLD 239
              H K +  + ++F +  E     ++PDYLC KI+ ++ R+P ITPSG+TY+R  I +HL 
Sbjct:   214 KHDKYLADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQ 273

Query:   240 KVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGW 276
             +VG FDP+TR PL + QL+PNLA+KE + A++ ++GW
Sbjct:   274 RVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFISENGW 310

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0071218 "cellular response to misfolded protein" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=ISS

GO:0000209 "protein polyubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

FB|FBgn0027052 CHIP "CHIP" [Drosophila melanogaster (taxid:7227)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 96/273 (35%), Positives = 150/273 (54%)

Query:    16 QLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAI 75
             QL+  GN  F+  +Y  AI+ Y++AI   P    Y+TNRALC+LK   W     D R+A+
Sbjct:    16 QLKEQGNCLFAARKYDDAINCYSKAIIKNPTNATYFTNRALCNLKLKRWELCCQDSRRAL 75

Query:    76 QLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYL 135
              +D + +KGH+ LGQ L++ + + + IK L++A +L +  K      +DI  +L  A+  
Sbjct:    76 DIDGNLLKGHFFLGQGLMEIDNFDEAIKHLQRAYDLSKEQKQN--FGDDITLQLRLARKK 133

Query:   136 LW---EQESSKRSWELQSXXXXXXXXXXXXHVLDISRKEGFLDEASSTHLKQMEA----- 187
              W   E++  ++  ELQS             + ++       DE      +++E      
Sbjct:   134 RWNVMEEKRIQQEIELQSYLNGLIKGDMESRLANLKLNGNVHDEQLKDKQQEIEQECDDH 193

Query:   188 ---LRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKF 244
                L  +F K  E     EVPD+LC KI+ +I  DPVITPSG+TYER  I +HL +VG F
Sbjct:   194 IKELNNIFSKVDERRKKREVPDFLCGKISFEILTDPVITPSGITYERKDIEEHLQRVGHF 253

Query:   245 DPITREPLRESQLVPNLAIKEAVRAYMDKHGWA 277
             DP+TR  L + QL+PN ++KE V +++ ++ W+
Sbjct:   254 DPVTRVKLTQDQLIPNFSMKEVVDSFIAENEWS 286

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0030018 "Z disc" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9WUD1	CHIP_MOUSE	6, ., 3, ., 2, ., -	0.3768	0.9288	0.8585	yes	no
Q5ZHY5	CHIP_CHICK	6, ., 3, ., 2, ., -	0.3812	0.9252	0.8280	yes	no
Q9SRS9	CHIP_ARATH	6, ., 3, ., 2, ., -	0.6678	0.9715	0.9820	yes	no
Q9UNE7	CHIP_HUMAN	6, ., 3, ., 2, ., -	0.3768	0.9288	0.8613	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00012527001	SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_390, whole genome shotgun sequence); (276 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00033001001	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (352 aa)						•			0.800
	GSVIVG00019136001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (419 aa)						•			0.800
	GSVIVG00016875001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (357 aa)						•			0.800
	GSVIVG00002640001	SubName- Full=Chromosome undetermined scaffold_134, whole genome shotgun sequence; (416 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	281
pfam04564	73	pfam04564, U-box, U-box domain	6e-32
smart00504	63	smart00504, Ubox, Modified RING finger domain	3e-23
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-17
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-13
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-09
COG5113	929	COG5113, UFD2, Ubiquitin fusion degradation protei	1e-08
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	8e-08
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	9e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-06
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	7e-06
COG4235	287	COG4235, COG4235, Cytochrome c biogenesis factor [	1e-05
TIGR00599	397	TIGR00599, rad18, DNA repair protein rad18	1e-04
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	6e-04
pfam11789	57	pfam11789, zf-Nse, Zinc-finger of the MIZ type in	9e-04
pfam12895	80	pfam12895, Apc3, Anaphase-promoting complex, cyclo	0.001

>gnl|CDD|203049 pfam04564, U-box, U-box domain

 Score =  112 bits (283), Expect = 6e-32
 Identities = 35/73 (47%), Positives = 50/73 (68%)

Query: 204 VPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAI 263
           +PD     ITL++ +DPVI PSG+TY+R+ I  HL  V   DP TREPL   QL+PNL +
Sbjct: 1   IPDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLEL 60

Query: 264 KEAVRAYMDKHGW 276
           KE + A+++++ W
Sbjct: 61  KEKIDAWLEENRW 73

This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score = 89.6 bits (223), Expect = 3e-23
 Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEA 266
              C I+L++ +DPVI PSG TYER+ I   L   G  DP+T +PL    L+PNLA+K A
Sbjct: 1   EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLSHG-TDPVTGQPLTHEDLIPNLALKSA 59

Query: 267 VRAY 270
           ++ +
Sbjct: 60  IQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 74.0 bits (182), Expect = 7e-17
 Identities = 28/91 (30%), Positives = 47/91 (51%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           GN Y+    Y  A++ Y +A+ L P+    + N A  + K   + +   D  KA++LD D
Sbjct: 7   GNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           + K +Y LG    +  +Y + ++  EKAL L
Sbjct: 67  NAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 62.3 bits (152), Expect = 5e-13
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN-DWTKVEAD 70
            AE L+  GN  F    Y  AI+AY +A+ L P+    + N AL +LK   D+ +   D
Sbjct: 1  DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 71 CRKAIQLD 78
            KA++LD
Sbjct: 61 LEKALELD 68

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 57.7 bits (139), Expect = 2e-09
 Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 8/98 (8%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
           K A +L+  GN  +    +  AI  Y++AI   P+ P+Y++NRA CH    DW KV  D 
Sbjct: 125 KYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDT 183

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKAL 109
             A++LD D  K        L +R    DG+ +   AL
Sbjct: 184 TAALELDPDYSK-------ALNRRANAYDGLGKYADAL 214

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|227444 COG5113, UFD2, Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 10/107 (9%)

Query: 184 QMEALR--------QVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITP-SGVTYERAVI 234
           Q+E LR            +A E++   +VPD     +   I +DPV  P S +T +R+ I
Sbjct: 823 QIEELRSFINRLEKVRVIEAVEEEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTI 882

Query: 235 LDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWAYKAS 281
             HL      DP  R PL    + PN  ++E +  +    G  +  S
Sbjct: 883 KAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCKGQKHGGS 928

Length = 929

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 52.1 bits (125), Expect = 8e-08
 Identities = 31/90 (34%), Positives = 46/90 (51%)

Query: 25  FSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG 84
           F  D +  A+D YT+AI L PN    + +RA  ++K  ++T+  AD  KAI+LD    K 
Sbjct: 13  FVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKA 72

Query: 85  HYLLGQTLLQRNEYADGIKELEKALNLGRG 114
           +   G   ++  EY      LEK  +L  G
Sbjct: 73  YLRKGTACMKLEEYQTAKAALEKGASLAPG 102

Length = 356

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 25/110 (22%), Positives = 42/110 (38%)

Query: 3   LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN 62
           ++  L       + L L G+   S      A+ AY +AI L PN        A   ++  
Sbjct: 182 IDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAG 241

Query: 63  DWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLG 112
           ++ + E      ++   +S   HYL      Q+  Y D  + L+ AL   
Sbjct: 242 EFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA 291

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 46  NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNE-YADGIKE 104
           +      N      K  D+ +      KA++LD D+ + +Y L    L+  + Y + +++
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 105 LEKALNL 111
           LEKAL L
Sbjct: 61  LEKALEL 67

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD 78
             Y+   +Y  A++ Y +A+ L P+    + N  L + K   + +      KA++LD
Sbjct: 41 AAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 51  WTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALN 110
             N    + K  D+ +      KA++LD D+   +Y L     +  +Y + +++ EKAL 
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62

Query: 111 L 111
           L
Sbjct: 63  L 63

Length = 100

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 46.9 bits (111), Expect = 7e-06
 Identities = 28/100 (28%), Positives = 51/100 (51%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
           K+A  L L G +   K ++  A+   +++I L P V   +  RA  +L+  D  K E D 
Sbjct: 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDF 388

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            KA++L+ +    +Y   Q    + E+A   K+ +K+++L
Sbjct: 389 DKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 2   VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTN--RALCHL 59
            LE  L      AE   L G  Y +  R   A+ AY  A+ L  + P        AL + 
Sbjct: 144 RLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQ 203

Query: 60  K-RNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK 118
             +    K  A  R+A+ LD  +++   LL     ++ +YA+     +  L+L     P+
Sbjct: 204 AGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263

Query: 119 GYIVEDIWQELARA 132
             ++E         
Sbjct: 264 RSLIERSIARALAQ 277

Length = 287

>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 208 LCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAV 267
           L C I  D F  PV+T    T+    I   L    K  P+ R   +ES+L  N  + E V
Sbjct: 27  LRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKC-PLCRAEDQESKLRSNWLVSEIV 85

Query: 268 RAY 270
            ++
Sbjct: 86  ESF 88

All proteins in this family for which functions are known are involved in nucleotide excision repair.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 397

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 7/103 (6%)

Query: 30  YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG 89
           Y  A+      I   P+ P Y        L+ N   +     +KA+ LD +S      L 
Sbjct: 322 YDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381

Query: 90  QTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARA 132
           Q LL+  +  + I+ L + L       P      + W  LA+A
Sbjct: 382 QALLKGGKPQEAIRILNRYL-FNDPEDP------NGWDLLAQA 417

Length = 484

>gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit

 Score = 36.5 bits (85), Expect = 9e-04
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 208 LCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVGK 243
           L C +TL  F +PV        +E+  IL  L +   
Sbjct: 12  LTCPLTLQPFEEPVTSKKCNHVFEKDAILSMLRRNKT 48

Nse1 and Nse2 are novel non-SMC subunits of the fission yeast Smc5-6 DNA repair complex. This family is the zinc-finger domain similar to the MIZ type of zinc-finger. Length = 57

>gnl|CDD|221837 pfam12895, Apc3, Anaphase-promoting complex, cyclosome, subunit 3

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 29  RYGAAIDAYTEAITLCPNV-PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYL 87
            Y  AI    + + L P+    Y    A C+  +  + +     RK    +       YL
Sbjct: 4   NYENAIFLAEKLLALTPSNEDAYLL--AQCYFLQGQYKRAYELLRKLKLDNSSGC--RYL 59

Query: 88  LGQTLLQRNEYADGIKELEKA 108
           L Q LL+  +Y + I  LEKA
Sbjct: 60  LAQCLLKLGKYDEAIAVLEKA 80

Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20. Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	281
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	100.0
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.9
KOG0553	304	consensus TPR repeat-containing protein [General f	99.87
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.76
PRK15359	144	type III secretion system chaperone protein SscB;	99.76
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.75
KOG4234	271	consensus TPR repeat-containing protein [General f	99.73
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.69
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.68
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.65
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.65
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.65
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.65
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.64
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.64
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.64
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.62
PRK11189	296	lipoprotein NlpI; Provisional	99.59
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.58
KOG1126	638	consensus DNA-binding cell division cycle control	99.57
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.56
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.54
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.53
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.53
PRK12370	553	invasion protein regulator; Provisional	99.52
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.51
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.49
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.49
PRK12370	553	invasion protein regulator; Provisional	99.49
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.49
KOG1126	638	consensus DNA-binding cell division cycle control	99.48
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.46
KOG1125	579	consensus TPR repeat-containing protein [General f	99.46
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.45
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.44
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.43
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.42
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.42
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.42
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.41
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.4
PRK15359	144	type III secretion system chaperone protein SscB;	99.4
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.4
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.4
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.4
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.39
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.39
PRK11189	296	lipoprotein NlpI; Provisional	99.38
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.37
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.37
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.37
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.37
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.37
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.37
PRK15331	165	chaperone protein SicA; Provisional	99.36
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.34
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.34
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.34
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.34
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.31
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.3
KOG1125	579	consensus TPR repeat-containing protein [General f	99.3
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.28
PLN02789	320	farnesyltranstransferase	99.27
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.27
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.26
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.26
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.25
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.25
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.24
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.23
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.22
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	99.22
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	99.21
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.2
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.18
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.16
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.15
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.14
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.14
PRK10803	263	tol-pal system protein YbgF; Provisional	99.14
PLN02789	320	farnesyltranstransferase	99.13
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.13
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.13
KOG0553	304	consensus TPR repeat-containing protein [General f	99.13
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	99.13
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.13
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.12
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	99.11
PF13371	73	TPR_9: Tetratricopeptide repeat	99.11
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.1
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.09
KOG4555	175	consensus TPR repeat-containing protein [Function	99.08
KOG2076	895	consensus RNA polymerase III transcription factor	99.07
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	99.06
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	99.06
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.05
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.05
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.04
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.04
KOG2076	895	consensus RNA polymerase III transcription factor	99.04
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.02
PF12688	120	TPR_5: Tetratrico peptide repeat	99.02
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.02
PF13512	142	TPR_18: Tetratricopeptide repeat	99.0
PRK14574	822	hmsH outer membrane protein; Provisional	99.0
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.99
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.96
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.96
KOG2003	840	consensus TPR repeat-containing protein [General f	98.96
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.95
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.95
PHA02929	238	N1R/p28-like protein; Provisional	98.95
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.92
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.91
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.91
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.91
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.89
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.89
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.89
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.89
KOG2042	943	consensus Ubiquitin fusion degradation protein-2 [	98.88
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.88
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.88
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.88
PRK11906	458	transcriptional regulator; Provisional	98.88
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.87
PF13371	73	TPR_9: Tetratricopeptide repeat	98.87
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.86
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.85
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.85
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.84
PRK14574	822	hmsH outer membrane protein; Provisional	98.83
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.82
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.82
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.81
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.8
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.79
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.78
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.77
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.77
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.77
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.76
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.76
COG5222	427	Uncharacterized conserved protein, contains RING Z	98.76
PRK11906	458	transcriptional regulator; Provisional	98.75
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.75
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.75
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.74
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.74
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.74
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.74
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.73
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.72
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.72
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.71
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.71
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.69
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.66
PHA02926	242	zinc finger-like protein; Provisional	98.66
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.65
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.65
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.65
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.64
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.64
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.64
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	98.63
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.62
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.61
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.61
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.61
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	98.6
KOG1129	478	consensus TPR repeat-containing protein [General f	98.6
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.6
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.6
PF14634	44	zf-RING_5: zinc-RING finger domain	98.57
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.57
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.56
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.56
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.55
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.53
PRK10803	263	tol-pal system protein YbgF; Provisional	98.53
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.44
KOG1310	758	consensus WD40 repeat protein [General function pr	98.44
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.42
KOG1129	478	consensus TPR repeat-containing protein [General f	98.4
PF13428	44	TPR_14: Tetratricopeptide repeat	98.39
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.37
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.35
PF13431	34	TPR_17: Tetratricopeptide repeat	98.35
PF13431	34	TPR_17: Tetratricopeptide repeat	98.34
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.34
KOG2003	840	consensus TPR repeat-containing protein [General f	98.34
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.32
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.31
KOG4234	271	consensus TPR repeat-containing protein [General f	98.31
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.31
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.3
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.28
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.27
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.27
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.25
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.25
PRK15331	165	chaperone protein SicA; Provisional	98.24
KOG2660	331	consensus Locus-specific chromosome binding protei	98.22
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.2
KOG0297	391	consensus TNF receptor-associated factor [Signal t	98.17
PF12688	120	TPR_5: Tetratrico peptide repeat	98.16
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.15
PF13428	44	TPR_14: Tetratricopeptide repeat	98.15
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.15
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.14
KOG0289	506	consensus mRNA splicing factor [General function p	98.1
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.09
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.08
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.07
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.07
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.04
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	98.04
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.02
KOG3039	303	consensus Uncharacterized conserved protein [Funct	97.92
PF13512	142	TPR_18: Tetratricopeptide repeat	97.9
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.89
KOG4555	175	consensus TPR repeat-containing protein [Function	97.88
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.84
COG5152	259	Uncharacterized conserved protein, contains RING a	97.84
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.8
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.76
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.74
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.73
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.7
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.69
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	97.65
KOG1002	791	consensus Nucleotide excision repair protein RAD16	97.64
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	97.64
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.62
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.62
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.61
PF04641	260	Rtf2: Rtf2 RING-finger	97.6
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.6
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.6
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.58
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	97.57
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.55
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.53
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.53
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.51
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.51
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.5
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.46
PRK10941	269	hypothetical protein; Provisional	97.42
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.41
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.41
PLN03218	1060	maturation of RBCL 1; Provisional	97.4
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.4
PRK10941	269	hypothetical protein; Provisional	97.39
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.38
PLN03218	1060	maturation of RBCL 1; Provisional	97.37
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	97.37
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.36
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.36
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.36
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	97.34
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.31
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.31
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.3
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.3
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.29
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.29
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.28
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.27
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.25
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	97.23
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.22
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.22
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.22
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.22
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.21
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.21
KOG3039	303	consensus Uncharacterized conserved protein [Funct	97.2
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.2
PRK04841	903	transcriptional regulator MalT; Provisional	97.2
PLN03077	857	Protein ECB2; Provisional	97.19
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.17
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.13
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.12
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.1
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.07
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.04
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.01
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.99
KOG1586	288	consensus Protein required for fusion of vesicles	96.97
PRK04841	903	transcriptional regulator MalT; Provisional	96.96
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.9
PLN03077	857	Protein ECB2; Provisional	96.89
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.88
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.87
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.87
KOG4367	699	consensus Predicted Zn-finger protein [Function un	96.84
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	96.84
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.83
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.78
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.75
KOG2471	696	consensus TPR repeat-containing protein [General f	96.73
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.73
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.67
KOG3113	293	consensus Uncharacterized conserved protein [Funct	96.65
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.61
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.59
KOG1585	308	consensus Protein required for fusion of vesicles	96.59
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.56
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.55
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.54
KOG1586	288	consensus Protein required for fusion of vesicles	96.51
KOG2979	262	consensus Protein involved in DNA repair [General	96.44
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.44
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.4
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	96.36
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.31
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	96.3
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.23
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	96.2
KOG1001	674	consensus Helicase-like transcription factor HLTF/	96.11
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	96.11
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.11
COG2912	269	Uncharacterized conserved protein [Function unknow	96.08
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	96.08
KOG0396	389	consensus Uncharacterized conserved protein [Funct	96.07
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	96.04
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	96.02
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.95
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.94
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.92
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.9
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	95.88
COG2912	269	Uncharacterized conserved protein [Function unknow	95.83
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	95.82
COG5109	396	Uncharacterized conserved protein, contains RING Z	95.8
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.79
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	95.74
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	95.72
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	95.69
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.65
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	95.62
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.61
KOG3364	149	consensus Membrane protein involved in organellar	95.45
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.45
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.36
KOG2471	696	consensus TPR repeat-containing protein [General f	95.32
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.24
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.24
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	95.2
KOG0825	1134	consensus PHD Zn-finger protein [General function	95.12
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.12
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	95.12
KOG3364	149	consensus Membrane protein involved in organellar	95.11
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.1
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.1
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.98
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.94
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	94.81
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.79
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	94.76
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.61
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.54
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.45
KOG4739	233	consensus Uncharacterized protein involved in syna	94.33
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.27
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.26
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	94.18
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.15
KOG2047	835	consensus mRNA splicing factor [RNA processing and	94.11
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	94.07
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.04
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.02
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	93.91
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	93.88
COG3947	361	Response regulator containing CheY-like receiver a	93.81
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.76
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	93.68
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.65
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	93.64
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	93.63
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	93.62
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.6
COG5219	1525	Uncharacterized conserved protein, contains RING Z	93.57
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	93.47
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	93.46
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	93.44
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	93.41
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.39
KOG3002	299	consensus Zn finger protein [General function pred	93.34
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	93.23
KOG2047	835	consensus mRNA splicing factor [RNA processing and	93.22
COG5191	435	Uncharacterized conserved protein, contains HAT (H	93.21
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.11
COG5627	275	MMS21 DNA repair protein MMS21 [DNA replication, r	92.91
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	92.84
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.74
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	92.73
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.68
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.59
COG4455	273	ImpE Protein of avirulence locus involved in tempe	92.48
COG5191	435	Uncharacterized conserved protein, contains HAT (H	92.31
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	92.23
KOG1585	308	consensus Protein required for fusion of vesicles	92.18
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.12
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	92.08
COG4455	273	ImpE Protein of avirulence locus involved in tempe	92.0
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	91.81
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	91.77
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	91.74
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.73
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	91.7
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	91.67
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	91.4
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	91.4
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	91.18
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	91.13
KOG0298	1394	consensus DEAD box-containing helicase-like transc	90.87
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	90.78
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	90.58
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.56
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	90.47
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	90.45
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	90.3
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.3
KOG2300	629	consensus Uncharacterized conserved protein [Funct	90.27
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	90.06
PF06416	113	DUF1076: Protein of unknown function (DUF1076); In	90.05
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	89.94
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	89.88
KOG2041	1189	consensus WD40 repeat protein [General function pr	89.7
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	89.66
KOG1310	758	consensus WD40 repeat protein [General function pr	89.56
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	89.54
KOG0529	421	consensus Protein geranylgeranyltransferase type I	89.42
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	89.28
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	89.28
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	89.25
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	88.93
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	88.89
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.88
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	88.79
KOG2041	1189	consensus WD40 repeat protein [General function pr	88.75
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	88.62
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	88.53
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	88.52
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	88.4
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	88.1
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	86.85
PF04212	69	MIT: MIT (microtubule interacting and transport) d	86.73
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.73
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	86.67
COG3947	361	Response regulator containing CheY-like receiver a	86.62
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	86.6
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	86.53
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	86.36
COG3813	84	Uncharacterized protein conserved in bacteria [Fun	86.29
COG5175	480	MOT2 Transcriptional repressor [Transcription]	85.9
KOG4814	872	consensus Uncharacterized conserved protein [Funct	85.58
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	85.37
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	85.37
PF07219	108	HemY_N: HemY protein N-terminus; InterPro: IPR0108	84.84
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	84.41
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	83.98
COG4941	415	Predicted RNA polymerase sigma factor containing a	83.26
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	83.2
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	83.15
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	83.09
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	82.92
PF14353	128	CpXC: CpXC protein	82.59
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	82.47
COG5236	493	Uncharacterized conserved protein, contains RING Z	82.14
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	81.63
PF12854	34	PPR_1: PPR repeat	81.23
KOG2581	493	consensus 26S proteasome regulatory complex, subun	80.91
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	80.87
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	80.84
PF04212	69	MIT: MIT (microtubule interacting and transport) d	80.75
PHA02537	230	M terminase endonuclease subunit; Provisional	80.71
PRK06266	178	transcription initiation factor E subunit alpha; V	80.7
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	80.67
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	80.62
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	80.55
KOG3899	381	consensus Uncharacterized conserved protein [Funct	80.39
KOG1940	276	consensus Zn-finger protein [General function pred	80.34

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.4e-41  Score=260.44  Aligned_cols=268  Identities=46%  Similarity=0.737  Sum_probs=245.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ   90 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~   90 (281)
                      +..+..+++.|+.+|..++|..||..|.+||.++|..+.+|.|+|.||+++++|+.+..++++|++++|+..+++|.+|.
T Consensus         7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~   86 (284)
T KOG4642|consen    7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQ   86 (284)
T ss_pred             chHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--
Q 023501           91 TLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDIS--  168 (281)
Q Consensus        91 ~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--  168 (281)
                      .+++...|++|+..+.+++.+.......  +...+...|..++...|.....+|..+..++..++..+++..+.++.+  
T Consensus        87 ~~l~s~~~~eaI~~Lqra~sl~r~~~~~--~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~El~~yl~slie~~~~~~~s~~  164 (284)
T KOG4642|consen   87 WLLQSKGYDEAIKVLQRAYSLLREQPFT--FGDDIPKALRDAKKKRWEVSEEKRIRQELELHSYLESLIEGDRERELSEW  164 (284)
T ss_pred             HHHhhccccHHHHHHHHHHHHHhcCCCC--CcchHHHHHHHHHhCccchhHHHHHHHHhhHHHHHHHHhccchhhHHHHH
Confidence            9999999999999999998886553333  566899999999999999999999999999999999999988666655  


Q ss_pred             hhccchhh--------hhhHHHHHHHHHHHHHHHhcCcCCCCCCCCcccccCCcccccCceecCCCcccccchHHhHhcc
Q 023501          169 RKEGFLDE--------ASSTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK  240 (281)
Q Consensus       169 ~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~  240 (281)
                      ..+++.+.        +.......+..+.++|+.+.....++++|+.++|.|+.++|.+||++|+|-||.+.-|++++..
T Consensus       165 ~~N~~sde~~k~~q~~~~~~~d~~~kel~elf~~v~e~rk~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~r  244 (284)
T KOG4642|consen  165 QENGESDEHLKTMQVPIEQDHDHTTKELSELFSKVDEKRKKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQR  244 (284)
T ss_pred             HHcCCChHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHH
Confidence            23433332        4467778888999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHcCCCccC
Q 023501          241 VGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWAYKA  280 (281)
Q Consensus       241 ~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~~~~~~~  280 (281)
                      .++++|++|.++++.+++||+.|+..|..|++.|+|+.+|
T Consensus       245 vghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~~~~  284 (284)
T KOG4642|consen  245 VGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWADDY  284 (284)
T ss_pred             hccCCchhcccCCHHhhccchHHHHHHHHHHHhccccccC
Confidence            8889999999999999999999999999999999999886

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.90  E-value=2e-24  Score=143.58  Aligned_cols=73  Identities=47%  Similarity=0.784  Sum_probs=63.9

Q ss_pred             CCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHcCC
Q 023501          204 VPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGW  276 (281)
Q Consensus       204 ~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~~~  276 (281)
                      +|+.|.||||+.+|.|||++|+||+||++||++|+..+..+||+|+++++..+++||..|+..|++|+.+|+|
T Consensus         1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~~   73 (73)
T PF04564_consen    1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENKK   73 (73)
T ss_dssp             SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCTC
T ss_pred             CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHccC
Confidence            5899999999999999999999999999999999998555799999999999999999999999999999987

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.87  E-value=2.2e-21  Score=157.58  Aligned_cols=106  Identities=32%  Similarity=0.485  Sum_probs=103.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG   89 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la   89 (281)
                      +...|+.++..|+.+++.++|++|+..|++||.++|+|+++|.|||.+|.++|.|+.|+++|+.||.+||.+.++|.++|
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG  156 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG  156 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           90 QTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        90 ~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      .+|+.+|++++|++.|.|+|.++|++
T Consensus       157 ~A~~~~gk~~~A~~aykKaLeldP~N  182 (304)
T KOG0553|consen  157 LAYLALGKYEEAIEAYKKALELDPDN  182 (304)
T ss_pred             HHHHccCcHHHHHHHHHhhhccCCCc
Confidence            99999999999999999999999983

>smart00504 Ubox Modified RING finger domain

Probab=99.76  E-value=6.7e-19  Score=114.37  Aligned_cols=63  Identities=46%  Similarity=0.829  Sum_probs=59.1

Q ss_pred             cccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHH
Q 023501          207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAY  270 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~  270 (281)
                      +|.||||+++|.+||+++|||+||+.||.+|+..++ .||+|+.+++..++++|..|++.|++|
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~-~cP~~~~~~~~~~l~~~~~l~~~i~~~   63 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHG-TDPVTGQPLTHEDLIPNLALKSAIQEW   63 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCC-CCCCCcCCCChhhceeCHHHHHHHHhC
Confidence            478999999999999999999999999999998755 699999999999999999999999976

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.76  E-value=3.3e-17  Score=124.47  Aligned_cols=113  Identities=14%  Similarity=0.093  Sum_probs=104.7

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      +++.++..+|+.   +..+|..+++.|+|++|+.+|.+++..+|.++.+|.++|.++..+|++++|+..++++++++|.+
T Consensus        15 ~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~   91 (144)
T PRK15359         15 ILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH   91 (144)
T ss_pred             HHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            456667766665   66789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      +.+++.+|.++..+|++++|+..|.+++.++|+...
T Consensus        92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~  127 (144)
T PRK15359         92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS  127 (144)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            999999999999999999999999999999887443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=3.6e-17  Score=141.96  Aligned_cols=119  Identities=29%  Similarity=0.406  Sum_probs=108.6

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL   88 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (281)
                      .+|+.+...+..|+.+|+.|+|..|+.+|++||..+|+|+.+|+|||.||.++|++..|++|++.+++++|++.++|++.
T Consensus       353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RK  432 (539)
T KOG0548|consen  353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRK  432 (539)
T ss_pred             hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            35777888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHH
Q 023501           89 GQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKY  134 (281)
Q Consensus        89 a~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~  134 (281)
                      |.++..+.+|++|.+.|.++++++|+       ...+...+.++..
T Consensus       433 g~al~~mk~ydkAleay~eale~dp~-------~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  433 GAALRAMKEYDKALEAYQEALELDPS-------NAEAIDGYRRCVE  471 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCch-------hHHHHHHHHHHHH
Confidence            99999999999999999999999876       3344455555443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.73  E-value=3.5e-16  Score=120.17  Aligned_cols=104  Identities=27%  Similarity=0.489  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN-----VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGH   85 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~   85 (281)
                      ...+..++..|+.+|+.|+|++|...|+.||++.|.     .+.+|.|+|.|.++++.|+.|+.+|.+||+++|.+.+|+
T Consensus        92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl  171 (271)
T KOG4234|consen   92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL  171 (271)
T ss_pred             HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence            456788999999999999999999999999999987     468999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           86 YLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        86 ~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .++|.+|.++.+|++|+..|.+.+.++|.
T Consensus       172 ~RRAeayek~ek~eealeDyKki~E~dPs  200 (271)
T KOG4234|consen  172 ERRAEAYEKMEKYEEALEDYKKILESDPS  200 (271)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence            99999999999999999999999999887

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.69  E-value=2.2e-15  Score=113.14  Aligned_cols=106  Identities=12%  Similarity=0.161  Sum_probs=101.8

Q ss_pred             hch-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHH
Q 023501            8 AGV-AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHY   86 (281)
Q Consensus         8 ~~~-~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~   86 (281)
                      ..+ ++..+.++..|..++..|++++|...|+-+..++|.++..|+++|.|+..+|+|++|+..|.+|+.++|+++.+++
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~  107 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW  107 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            345 6788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501           87 LLGQTLLQRNEYADGIKELEKALNLGR  113 (281)
Q Consensus        87 ~la~~~~~~g~~~~A~~~~~kal~~~p  113 (281)
                      ++|.+++.+|+.+.|.+.|+.++..+.
T Consensus       108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        108 AAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999974

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.68  E-value=2.5e-15  Score=112.95  Aligned_cols=114  Identities=20%  Similarity=0.266  Sum_probs=109.8

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      .++.++..+|+.+.....+|..++..|++++|+..|++++..+|.++.++.++|.++..+|++++|+..++++++++|.+
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~   84 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD   84 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            46778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      +..++.+|.++...|++++|+..|+++++++|+.
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  118 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEICGEN  118 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999999998873

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=5e-15  Score=125.47  Aligned_cols=119  Identities=27%  Similarity=0.410  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---------------chHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN---------------VPIYWTNRALCHLKRNDWTKVEADCRKAI   75 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al   75 (281)
                      -+.|...+..|+.+|+.|+|..|+..|.+|+..-..               -..++.|+|.||.++++|..|+..|+++|
T Consensus       205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            356788999999999999999999999999877442               13689999999999999999999999999


Q ss_pred             hhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHH
Q 023501           76 QLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLL  136 (281)
Q Consensus        76 ~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~  136 (281)
                      +++|+|.+|+|+.|.++..+|+|+.|...|++++++.|++       ..+..++..+...+
T Consensus       285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-------ka~~~el~~l~~k~  338 (397)
T KOG0543|consen  285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-------KAARAELIKLKQKI  338 (397)
T ss_pred             hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998883       24555555554433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.65  E-value=5.4e-15  Score=118.22  Aligned_cols=112  Identities=24%  Similarity=0.357  Sum_probs=105.9

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH-HHhcC--HHHHHHHHHHHHhhcC
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCH-LKRND--WTKVEADCRKAIQLDH   79 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~al~l~p   79 (281)
                      ++.++..+|++++.|..+|..+...|++++|+..|.+++.++|+++.++.++|.++ ...|+  +++|...++++++++|
T Consensus        62 l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP  141 (198)
T PRK10370         62 LQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA  141 (198)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence            45677788999999999999999999999999999999999999999999999985 67787  5999999999999999


Q ss_pred             cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           80 DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        80 ~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +++.+++.+|.++...|++++|+..|++++++.|.
T Consensus       142 ~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        142 NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            99999999999999999999999999999999876

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.65  E-value=1.3e-15  Score=134.35  Aligned_cols=132  Identities=17%  Similarity=0.168  Sum_probs=102.0

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501            4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK   83 (281)
Q Consensus         4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (281)
                      +++...+|..+.++.++|++|-..+.|+.|+.+|.+|+.+.|+.+.++.|+|.+|+..|..+-|+..|++||.++|+++.
T Consensus       242 ~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~  321 (966)
T KOG4626|consen  242 EEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPD  321 (966)
T ss_pred             HHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchH
Confidence            45677778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHH
Q 023501           84 GHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYL  135 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~  135 (281)
                      ++.++|.++...|+..+|+.+|.+++.++|...+.-+.+..+..+.++.+.+
T Consensus       322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A  373 (966)
T KOG4626|consen  322 AYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEA  373 (966)
T ss_pred             HHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHH
Confidence            8888888888888888888888888888777666555555555555544433

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.65  E-value=2.1e-15  Score=133.06  Aligned_cols=161  Identities=16%  Similarity=0.131  Sum_probs=118.9

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501            4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK   83 (281)
Q Consensus         4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (281)
                      ..+....|..|.++-++|.+|+.+|..+-||..|.+||+++|+.+.+|.|+|+++...|+..+|...|.+|+.+.|+++.
T Consensus       276 ~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~had  355 (966)
T KOG4626|consen  276 LRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHAD  355 (966)
T ss_pred             HHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHH
Confidence            45666677788888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHH------------------HH
Q 023501           84 GHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSK------------------RS  145 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------~~  145 (281)
                      +.+++|.++..+|.+++|...|.+++...|+.......+..+.+..+....++...++..                  ..
T Consensus       356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~  435 (966)
T KOG4626|consen  356 AMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEM  435 (966)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHh
Confidence            888888888888888888888888888877765555556666665555555444443333                  33


Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 023501          146 WELQSLKEACEAALEEKHV  164 (281)
Q Consensus       146 ~~~~~~~~~~~~~l~~~~~  164 (281)
                      ++...+.....+++..+|.
T Consensus       436 g~v~~A~q~y~rAI~~nPt  454 (966)
T KOG4626|consen  436 GDVSAAIQCYTRAIQINPT  454 (966)
T ss_pred             hhHHHHHHHHHHHHhcCcH
Confidence            5566666666666665554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.64  E-value=6.4e-15  Score=128.31  Aligned_cols=100  Identities=32%  Similarity=0.459  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ   94 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~   94 (281)
                      ..+...|..++..|+|++|+.+|++|+.++|+++.+|.++|.+|..+|++++|+.++++|+.++|.++.+|+++|.++..
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~   82 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            34778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcChHHHHHHHHHHHhhccC
Q 023501           95 RNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        95 ~g~~~~A~~~~~kal~~~p~  114 (281)
                      +|+|++|+..|++++.++|+
T Consensus        83 lg~~~eA~~~~~~al~l~P~  102 (356)
T PLN03088         83 LEEYQTAKAALEKGASLAPG  102 (356)
T ss_pred             hCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999887

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=4.3e-15  Score=127.82  Aligned_cols=101  Identities=36%  Similarity=0.636  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ   90 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~   90 (281)
                      .+.|..++.+||.+|+.|+|++||++|++||++.|+.+.+|.||+.||..+|+|++.++++.+|++++|++.+++++++.
T Consensus       112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~  191 (606)
T KOG0547|consen  112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS  191 (606)
T ss_pred             HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcChHHHHHHHHHHHhhc
Q 023501           91 TLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        91 ~~~~~g~~~~A~~~~~kal~~~  112 (281)
                      ++..+|++++|+.... ++-+.
T Consensus       192 A~E~lg~~~eal~D~t-v~ci~  212 (606)
T KOG0547|consen  192 AHEQLGKFDEALFDVT-VLCIL  212 (606)
T ss_pred             HHHhhccHHHHHHhhh-HHHHh
Confidence            9999999999998875 44443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=1.9e-15  Score=131.40  Aligned_cols=101  Identities=28%  Similarity=0.399  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL   93 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~   93 (281)
                      +..++..|+..|..|+|+.|+.+|+.||.++|.++..|+||+.||..+|+|++|+.+..+.++++|.|+++|.++|.++.
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~   81 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF   81 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcChHHHHHHHHHHHhhccC
Q 023501           94 QRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        94 ~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .+|+|++|+..|.+.|+.+|+
T Consensus        82 ~lg~~~eA~~ay~~GL~~d~~  102 (539)
T KOG0548|consen   82 GLGDYEEAILAYSEGLEKDPS  102 (539)
T ss_pred             hcccHHHHHHHHHHHhhcCCc
Confidence            999999999999999999887

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.62  E-value=3.3e-14  Score=133.01  Aligned_cols=102  Identities=27%  Similarity=0.358  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT   91 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~   91 (281)
                      ..+..+..+|..++..|++++|+..|++++.++|+++..|.++|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus       329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~  408 (615)
T TIGR00990       329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL  408 (615)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            33344444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHhcChHHHHHHHHHHHhhcc
Q 023501           92 LLQRNEYADGIKELEKALNLGR  113 (281)
Q Consensus        92 ~~~~g~~~~A~~~~~kal~~~p  113 (281)
                      +..+|++++|+..|++++.++|
T Consensus       409 ~~~~g~~~~A~~~~~kal~l~P  430 (615)
T TIGR00990       409 HFIKGEFAQAGKDYQKSIDLDP  430 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCc
Confidence            4444444444444444444433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.59  E-value=4.1e-14  Score=120.52  Aligned_cols=106  Identities=13%  Similarity=0.103  Sum_probs=102.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG   89 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la   89 (281)
                      ++..+..+..+|..+...|++.+|+..|++++.++|+++.+|.++|.++..+|++++|+..++++++++|++..+++.+|
T Consensus        60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg  139 (296)
T PRK11189         60 DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRG  139 (296)
T ss_pred             cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45668999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           90 QTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        90 ~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      .++...|++++|+..++++++++|+.
T Consensus       140 ~~l~~~g~~~eA~~~~~~al~~~P~~  165 (296)
T PRK11189        140 IALYYGGRYELAQDDLLAFYQDDPND  165 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999998873

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.58  E-value=7e-15  Score=121.72  Aligned_cols=103  Identities=35%  Similarity=0.525  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT   91 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~   91 (281)
                      +.+-.+++.|+.||++|.|++||.+|++++...|.++.++.|||.+|+++..|..|..+|+.|+.+|..+.++|-++|.+
T Consensus        95 ~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A  174 (536)
T KOG4648|consen   95 KKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA  174 (536)
T ss_pred             HhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence            33445899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcChHHHHHHHHHHHhhccC
Q 023501           92 LLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        92 ~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      -..+|...+|.+.++.+|.+.|+
T Consensus       175 R~~Lg~~~EAKkD~E~vL~LEP~  197 (536)
T KOG4648|consen  175 RESLGNNMEAKKDCETVLALEPK  197 (536)
T ss_pred             HHHHhhHHHHHHhHHHHHhhCcc
Confidence            99999999999999999999887

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=1.1e-14  Score=129.53  Aligned_cols=133  Identities=19%  Similarity=0.213  Sum_probs=115.1

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501            4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK   83 (281)
Q Consensus         4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (281)
                      ...++.++..++.|-..|+.+--+++++.||++|.+|+.++|+.+.+|..+|.=+....+|+.|...|+.|+..+|.+..
T Consensus       411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn  490 (638)
T KOG1126|consen  411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN  490 (638)
T ss_pred             HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHH
Q 023501           84 GHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLL  136 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~  136 (281)
                      |||-+|.+|.++++++.|.-.|++|+.++|.+..-......++..+++.++++
T Consensus       491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL  543 (638)
T KOG1126|consen  491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKAL  543 (638)
T ss_pred             HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHH
Confidence            99999999999999999999999999998875443223333444444443333

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.56  E-value=2.6e-13  Score=127.06  Aligned_cols=146  Identities=16%  Similarity=0.184  Sum_probs=125.3

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      ++.++...|..+..+..+|..++..|++++|+..|.++++.+|+++.++.++|.+++.+|++++|+.+++++++++|++.
T Consensus       354 ~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~  433 (615)
T TIGR00990       354 LSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI  433 (615)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence            45566677888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEK  162 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (281)
                      .+++.+|.++..+|++++|+..|.+++...|....                .....+......+++.++...+.++++..
T Consensus       434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~----------------~~~~lg~~~~~~g~~~~A~~~~~~Al~l~  497 (615)
T TIGR00990       434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD----------------VYNYYGELLLDQNKFDEAIEKFDTAIELE  497 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH----------------HHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999998776322                12233445556788888999999988865


Q ss_pred             hh
Q 023501          163 HV  164 (281)
Q Consensus       163 ~~  164 (281)
                      +.
T Consensus       498 p~  499 (615)
T TIGR00990       498 KE  499 (615)
T ss_pred             Cc
Confidence            43

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=5.6e-13  Score=109.96  Aligned_cols=104  Identities=27%  Similarity=0.448  Sum_probs=97.5

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN----VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG   84 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (281)
                      .+-+.|+.++..||.||+.++|..|+..|+++|.....    ++.+|.|||.|.+-+|+|..|+.||.+|++++|.+.++
T Consensus        76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka  155 (390)
T KOG0551|consen   76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKA  155 (390)
T ss_pred             ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence            34568999999999999999999999999999998544    57899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           85 HYLLGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        85 ~~~la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                      +++-|.+++.+.++.+|+.+++..+.++
T Consensus       156 ~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  156 YIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence            9999999999999999999999988774

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=8.5e-13  Score=113.88  Aligned_cols=124  Identities=17%  Similarity=0.174  Sum_probs=73.4

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501            4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK   83 (281)
Q Consensus         4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (281)
                      +.++..++.....+..+|..|...++-++-...|.+|.+++|.++.+|+.||+.++-+++|++|+.+|++++.++|.++-
T Consensus       350 ~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~  429 (606)
T KOG0547|consen  350 DAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY  429 (606)
T ss_pred             HHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH
Confidence            34444445545556666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHH
Q 023501           84 GHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQ  127 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~  127 (281)
                      +|..++-+++.+++++++...|+.+..--|.-.....+..++..
T Consensus       430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLt  473 (606)
T KOG0547|consen  430 AYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILT  473 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Confidence            66666666666666655555555555555543333334444443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.53  E-value=8e-13  Score=109.66  Aligned_cols=151  Identities=18%  Similarity=0.124  Sum_probs=123.4

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL   88 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (281)
                      .++..++.+.++|..++..|.+.+|+..|..|++.+|++..+++.||.+|+.+|+-..|+.++.+++++.|++.-|...+
T Consensus        33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR  112 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR  112 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501           89 GQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWE---QESSKRSWELQSLKEACEAALEEKH  163 (281)
Q Consensus        89 a~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~  163 (281)
                      |.+++.+|++++|...|.+++..+|+++.    ..+.+..+..+......   .....-.+....+...+..+|+..+
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~~~s~~~----~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~  186 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQHEPSNGL----VLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP  186 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcCCCcch----hHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence            99999999999999999999999886544    23444444443333222   2222223456666666666666544

>PRK12370 invasion protein regulator; Provisional

Probab=99.52  E-value=5.8e-13  Score=122.91  Aligned_cols=115  Identities=15%  Similarity=0.111  Sum_probs=105.7

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHH
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSK---------DRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR   72 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~   72 (281)
                      ++++++..+|+.+..+..+|..++..         +++++|+..+++|++++|+++.++..+|.++...|++++|+..++
T Consensus       283 ~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~  362 (553)
T PRK12370        283 LLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFK  362 (553)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            46678888899999999998877633         458999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCC
Q 023501           73 KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK  116 (281)
Q Consensus        73 ~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~  116 (281)
                      +|++++|+++.+++.+|.++...|++++|+..+++++.++|...
T Consensus       363 ~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~  406 (553)
T PRK12370        363 QANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA  406 (553)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence            99999999999999999999999999999999999999988743

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.51  E-value=1.1e-12  Score=103.30  Aligned_cols=142  Identities=16%  Similarity=0.087  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ   90 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~   90 (281)
                      ...+.+...+|..|+..|++..|..-+++||+.+|++..+|..||..|.+.|+.+.|-+.|++|++++|++...+.+.|-
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~  111 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA  111 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence            45577888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023501           91 TLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLD  166 (281)
Q Consensus        91 ~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  166 (281)
                      -++.+|++++|.+.|++|+.. |.-+    ......         .+.+-...+.++.+.+..++.++|+.++...
T Consensus       112 FLC~qg~~~eA~q~F~~Al~~-P~Y~----~~s~t~---------eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~  173 (250)
T COG3063         112 FLCAQGRPEEAMQQFERALAD-PAYG----EPSDTL---------ENLGLCALKAGQFDQAEEYLKRALELDPQFP  173 (250)
T ss_pred             HHHhCCChHHHHHHHHHHHhC-CCCC----Ccchhh---------hhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence            999999999999999999876 3211    112222         2333344555666667777777776665533

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=3.8e-12  Score=109.28  Aligned_cols=144  Identities=18%  Similarity=0.146  Sum_probs=120.5

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      ....+.+.+|+-..+|..+|..|..-++-..|+..|+.|++++|.|..+|+++|++|--++...=|+-++++|+++.|++
T Consensus       352 YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD  431 (559)
T KOG1155|consen  352 YFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND  431 (559)
T ss_pred             HHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence            35567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEE  161 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (281)
                      ...|..+|++|.++++.++|+..|.+++....-++       .+.-.         .++-.++.++.+++..+..+.++.
T Consensus       432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~-------~~l~~---------LakLye~l~d~~eAa~~yek~v~~  495 (559)
T KOG1155|consen  432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG-------SALVR---------LAKLYEELKDLNEAAQYYEKYVEV  495 (559)
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch-------HHHHH---------HHHHHHHHHhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998832211       22222         223334445556666666666553

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.49  E-value=1.3e-13  Score=91.10  Aligned_cols=67  Identities=33%  Similarity=0.457  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcC
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN-DWTKVEADCRKAIQLDH   79 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p   79 (281)
                      +|..+..+|..++..|+|++|+.+|+++++.+|+++.+++++|.||..+| ++++|+.++++|++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            47788888888888888888888888888888888888888888888888 68888888888888887

...

>PRK12370 invasion protein regulator; Provisional

Probab=99.49  E-value=7.7e-13  Score=122.12  Aligned_cols=110  Identities=10%  Similarity=-0.048  Sum_probs=103.9

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      +++++..+|+.+..+..+|..+...|++++|+..|++|++++|+++.+++++|.++...|++++|+..++++++++|.++
T Consensus       327 ~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~  406 (553)
T PRK12370        327 AIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA  406 (553)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence            45677788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                      .+++.++.+++..|++++|+..+++++...
T Consensus       407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~  436 (553)
T PRK12370        407 AAGITKLWITYYHTGIDDAIRLGDELRSQH  436 (553)
T ss_pred             hhHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence            888888888999999999999999999875

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=3e-13  Score=114.42  Aligned_cols=105  Identities=25%  Similarity=0.450  Sum_probs=99.0

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN----VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGH   85 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~   85 (281)
                      .++.-+.++..|+..|+.|+|..|.+.|+.||.++|+    ++.+|.|||.+...+|+..+|+.+|+.|++|||...+++
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal  324 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL  324 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence            4566788999999999999999999999999999998    478999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           86 YLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        86 ~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .+.|.++..+++|++|++.|++++++..+
T Consensus       325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  325 LRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999998433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=1.3e-13  Score=122.82  Aligned_cols=134  Identities=16%  Similarity=0.171  Sum_probs=119.4

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      ..++|++.+|..+-++-.+|..+....+|+.|..+|+.|+..+|.+..+|+++|.+|+++++++.|.-.+++|++++|.+
T Consensus       443 ~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n  522 (638)
T KOG1126|consen  443 CFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN  522 (638)
T ss_pred             HHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHH
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYL  135 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~  135 (281)
                      ......+|.++.++|+.++|+..|++|+.++|.+....+....+...+.+-.+.
T Consensus       523 svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ea  576 (638)
T KOG1126|consen  523 SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEA  576 (638)
T ss_pred             hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHH
Confidence            999999999999999999999999999999998666544444444444444333

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.46  E-value=4.4e-12  Score=119.17  Aligned_cols=108  Identities=16%  Similarity=0.076  Sum_probs=64.9

Q ss_pred             hhchHHHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            7 LAGVAKQAEQLRLDGNYYFSKDRYGA----AIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      ....|+.+..+..+|..++..|++++    |+..|++++..+|+++.++.++|.++...|++++|+..+++++.++|+++
T Consensus       239 l~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~  318 (656)
T PRK15174        239 LARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP  318 (656)
T ss_pred             HhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            33444555555556666666666654    56666666666666666666666666666666666666666666666666


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .++..+|.++..+|++++|+..|.+++...|.
T Consensus       319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~  350 (656)
T PRK15174        319 YVRAMYARALRQVGQYTAASDEFVQLAREKGV  350 (656)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            66666666666666666666666666655443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.46  E-value=3.9e-13  Score=118.04  Aligned_cols=130  Identities=23%  Similarity=0.340  Sum_probs=111.7

Q ss_pred             hhhhhhhchH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc
Q 023501            2 VLEAGLAGVA-KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD   80 (281)
Q Consensus         2 ~l~~~~~~~~-~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~   80 (281)
                      +|+.+...+. ..+++..-+|..|+..|+|+.|+.+|+.||...|+|..+|..+|..+....+.++|+..|++|++|.|.
T Consensus       417 fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~  496 (579)
T KOG1125|consen  417 FLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG  496 (579)
T ss_pred             HHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC
Confidence            4455544332 678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcch---HHHHHHHHHH
Q 023501           81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYI---VEDIWQELAR  131 (281)
Q Consensus        81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~---~~~~~~~l~~  131 (281)
                      ++++.|++|..++.+|.|++|+.+|..||.+.+.+......   .+.++..|+.
T Consensus       497 yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~  550 (579)
T KOG1125|consen  497 YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRL  550 (579)
T ss_pred             eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHH
Confidence            99999999999999999999999999999998763332111   2445555553

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.45  E-value=2.8e-12  Score=123.96  Aligned_cols=114  Identities=14%  Similarity=0.032  Sum_probs=103.0

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      ++.++...|+ +..+..+|..+.+.|++++|+..|.+++..+|+++.++.++|.++...|++++|+..+++|++++|+++
T Consensus       599 ~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~  677 (987)
T PRK09782        599 LTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP  677 (987)
T ss_pred             HHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            3455665665 788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      .+++.+|.++..+|++++|+..|+++++++|++..
T Consensus       678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~  712 (987)
T PRK09782        678 ALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL  712 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence            99999999999999999999999999999887433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.44  E-value=6e-12  Score=121.70  Aligned_cols=142  Identities=13%  Similarity=0.111  Sum_probs=112.2

Q ss_pred             hhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHH
Q 023501            6 GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGH   85 (281)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~   85 (281)
                      ++...|.....+..++......|++++|+..|.+++..+|+ +.++.++|.++.++|++++|+..+++++.++|+++.++
T Consensus       568 AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~  646 (987)
T PRK09782        568 AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQ  646 (987)
T ss_pred             HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            33334444444555566666679999999999999999996 89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501           86 YLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus        86 ~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      ..+|.++...|++++|+..|++++++.|+...       +         ....+......+++.++...++++++..+.
T Consensus       647 ~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~-------a---------~~nLA~al~~lGd~~eA~~~l~~Al~l~P~  709 (987)
T PRK09782        647 AALGYALWDSGDIAQSREMLERAHKGLPDDPA-------L---------IRQLAYVNQRLDDMAATQHYARLVIDDIDN  709 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-------H---------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999887333       2         222233344557777788888888876653

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.43  E-value=2.4e-11  Score=100.11  Aligned_cols=151  Identities=14%  Similarity=0.120  Sum_probs=121.0

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh--
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP---IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK--   83 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~--   83 (281)
                      .++..+..+..+|..++..|+|++|+..|.+++...|+++   .+++.+|.++...|++++|+..++++++..|+++.  
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  107 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD  107 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence            3456788999999999999999999999999999999876   68899999999999999999999999999998876  


Q ss_pred             -HHHHHHHHHHHh--------cChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 023501           84 -GHYLLGQTLLQR--------NEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAK-----YLLWEQESSKRSWELQ  149 (281)
Q Consensus        84 -a~~~la~~~~~~--------g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~  149 (281)
                       +++.+|.++...        |++++|+..|++++...|++....    .....+....     .....+....+.+++.
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~----~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~  183 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP----DAKKRMDYLRNRLAGKELYVARFYLKRGAYV  183 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence             799999999987        889999999999999988754321    1111111111     1122334455668888


Q ss_pred             HHHHHHHHHHHHhh
Q 023501          150 SLKEACEAALEEKH  163 (281)
Q Consensus       150 ~~~~~~~~~l~~~~  163 (281)
                      ++...+..++...+
T Consensus       184 ~A~~~~~~al~~~p  197 (235)
T TIGR03302       184 AAINRFETVVENYP  197 (235)
T ss_pred             HHHHHHHHHHHHCC
Confidence            88888888887654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.42  E-value=6.7e-12  Score=98.99  Aligned_cols=143  Identities=17%  Similarity=0.126  Sum_probs=122.2

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--C
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD--H   79 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--p   79 (281)
                      -|+++++.+|+...++..++..|.+.|+.+.|-+.|++|+.++|++..+++|.|.-+...|.|++|...+++|+..-  |
T Consensus        57 nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~  136 (250)
T COG3063          57 NLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYG  136 (250)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCC
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999998753  4


Q ss_pred             cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           80 DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAAL  159 (281)
Q Consensus        80 ~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (281)
                      .-...+-++|.|.++.|+++.|...|.+++.++|+....                .....+.+...+++..+..+++...
T Consensus       137 ~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~----------------~l~~a~~~~~~~~y~~Ar~~~~~~~  200 (250)
T COG3063         137 EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPA----------------LLELARLHYKAGDYAPARLYLERYQ  200 (250)
T ss_pred             CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChH----------------HHHHHHHHHhcccchHHHHHHHHHH
Confidence            557899999999999999999999999999999986653                3333344445566666665555554


Q ss_pred             H
Q 023501          160 E  160 (281)
Q Consensus       160 ~  160 (281)
                      .
T Consensus       201 ~  201 (250)
T COG3063         201 Q  201 (250)
T ss_pred             h
Confidence            3

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.42  E-value=1.1e-13  Score=119.27  Aligned_cols=72  Identities=26%  Similarity=0.344  Sum_probs=64.4

Q ss_pred             CCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHc
Q 023501          202 AEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKH  274 (281)
Q Consensus       202 ~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~  274 (281)
                      ..+...+.|+||.+++.+||+++|||+||..||..|+.... .||+|+.++....+.+|..|.++|+.|....
T Consensus        21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~-~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R   92 (397)
T TIGR00599        21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQP-KCPLCRAEDQESKLRSNWLVSEIVESFKNLR   92 (397)
T ss_pred             cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCC-CCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence            34556799999999999999999999999999999998766 5999999998889999999999999996543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.42  E-value=3.1e-11  Score=98.10  Aligned_cols=139  Identities=16%  Similarity=0.161  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ   90 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~   90 (281)
                      ...+..+..+|..++..|++++|+..+.+++..+|.+..++..+|.++...|++++|+..++++++++|.+..+++.+|.
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  107 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT  107 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501           91 TLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKH  163 (281)
Q Consensus        91 ~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (281)
                      ++...|++++|+..+.+++...+.+..     ......         .+......++..++...+.+++...+
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~---------l~~~~~~~g~~~~A~~~~~~~~~~~~  166 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQP-----ARSLEN---------AGLCALKAGDFDKAEKYLTRALQIDP  166 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccc-----hHHHHH---------HHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            999999999999999999976322111     111111         12223345666667777777766543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.41  E-value=1.6e-11  Score=99.75  Aligned_cols=143  Identities=16%  Similarity=0.111  Sum_probs=117.0

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--Cc
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD--HD   80 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--p~   80 (281)
                      +++++...|..+..+..+|..++..|++++|+..|.+++...|.+..++.++|.++...|++++|+..+++++...  |.
T Consensus        54 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~  133 (234)
T TIGR02521        54 LDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ  133 (234)
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence            4455666788889999999999999999999999999999999999999999999999999999999999999864  55


Q ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALE  160 (281)
Q Consensus        81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  160 (281)
                      ....++.+|.++...|++++|...+.+++...|....       ..         ...+......+++.++...+++++.
T Consensus       134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~---------~~la~~~~~~~~~~~A~~~~~~~~~  197 (234)
T TIGR02521       134 PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPE-------SL---------LELAELYYLRGQYKDARAYLERYQQ  197 (234)
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChH-------HH---------HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6788999999999999999999999999999776221       11         1122223344556666666666665


Q ss_pred             H
Q 023501          161 E  161 (281)
Q Consensus       161 ~  161 (281)
                      .
T Consensus       198 ~  198 (234)
T TIGR02521       198 T  198 (234)
T ss_pred             h
Confidence            4

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.40  E-value=1.1e-11  Score=90.72  Aligned_cols=102  Identities=13%  Similarity=0.124  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGHYL   87 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~   87 (281)
                      ++.++..|..++..|+|++|+..|.+++...|++   +.+++.+|.++.+.|+++.|+..+++++...|++   +.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4678899999999999999999999999999876   5789999999999999999999999999999885   678999


Q ss_pred             HHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           88 LGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        88 la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      +|.++..+|++++|+..+.+++...|++
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence            9999999999999999999999998773

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.40  E-value=2.6e-12  Score=97.60  Aligned_cols=94  Identities=11%  Similarity=0.038  Sum_probs=88.4

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      +..+...+|..+..+..+|..+...|++++|+..|.+++.++|+++.+++++|.|+..+|++++|+..+++|++++|+++
T Consensus        47 ~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~  126 (144)
T PRK15359         47 FSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA  126 (144)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            45667778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhc
Q 023501           83 KGHYLLGQTLLQRN   96 (281)
Q Consensus        83 ~a~~~la~~~~~~g   96 (281)
                      ..+..+|.+...++
T Consensus       127 ~~~~~~~~~~~~l~  140 (144)
T PRK15359        127 SWSEIRQNAQIMVD  140 (144)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998877654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.40  E-value=8.5e-12  Score=86.28  Aligned_cols=98  Identities=30%  Similarity=0.446  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHh
Q 023501           16 QLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQR   95 (281)
Q Consensus        16 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~   95 (281)
                      .+..+|..++..|++++|+..+.+++...|.+..++..+|.++...|++++|+..+++++.+.|.+..+++.+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChHHHHHHHHHHHhhcc
Q 023501           96 NEYADGIKELEKALNLGR  113 (281)
Q Consensus        96 g~~~~A~~~~~kal~~~p  113 (281)
                      |++++|...+.+++..+|
T Consensus        82 ~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          82 GKYEEALEAYEKALELDP   99 (100)
T ss_pred             HhHHHHHHHHHHHHccCC
Confidence            999999999999998865

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.40  E-value=1.6e-13  Score=80.32  Aligned_cols=39  Identities=31%  Similarity=0.553  Sum_probs=31.7

Q ss_pred             ccCCcccccCceecCCCcccccchHHhHhccCCC---CCCCC
Q 023501          210 CKITLDIFRDPVITPSGVTYERAVILDHLDKVGK---FDPIT  248 (281)
Q Consensus       210 c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~---~cP~~  248 (281)
                      ||||.++|.+||+++|||+||++||..+++....   .||+|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999999999999999999999999999986532   49987

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.40  E-value=1.8e-13  Score=105.44  Aligned_cols=62  Identities=26%  Similarity=0.338  Sum_probs=51.9

Q ss_pred             CCCCCCcccccCCcccccCceecCCCcccccchHHhHhcc---------------CCCCCCCCCCCcCCCCCcccHH
Q 023501          201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK---------------VGKFDPITREPLRESQLVPNLA  262 (281)
Q Consensus       201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~---------------~~~~cP~~~~~~~~~~~~~n~~  262 (281)
                      ..+...++.||||.+.+.+||+|+|||.||+.||.+|+..               +...||+|+.+++...++|.+.
T Consensus        12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg   88 (193)
T PLN03208         12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG   88 (193)
T ss_pred             eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence            3444567999999999999999999999999999999852               1235999999999888888753

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.39  E-value=1.5e-12  Score=89.56  Aligned_cols=82  Identities=32%  Similarity=0.514  Sum_probs=74.8

Q ss_pred             hcCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHH
Q 023501           26 SKDRYGAAIDAYTEAITLCPN--VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIK  103 (281)
Q Consensus        26 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~  103 (281)
                      ..|+|+.|+.+|+++++..|+  +..++..+|.||++.|+|++|+..+++ .+.+|.++..++.+|.++..+|++++|+.
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            368999999999999999995  577888899999999999999999999 99999999999999999999999999999


Q ss_pred             HHHHH
Q 023501          104 ELEKA  108 (281)
Q Consensus       104 ~~~ka  108 (281)
                      .++++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.39  E-value=2.1e-12  Score=85.20  Aligned_cols=67  Identities=27%  Similarity=0.456  Sum_probs=65.0

Q ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhc-ChHHHHHHHHHHHhhcc
Q 023501           47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRN-EYADGIKELEKALNLGR  113 (281)
Q Consensus        47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g-~~~~A~~~~~kal~~~p  113 (281)
                      ++..|..+|.+++..|+|++|+..++++++++|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            57899999999999999999999999999999999999999999999999 79999999999999977

...

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.38  E-value=6.1e-11  Score=101.08  Aligned_cols=108  Identities=15%  Similarity=0.136  Sum_probs=94.8

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      +.+++...|+.+.++..+|..+...|+|++|+..|+++++++|++..++.++|.++...|++++|+.+++++++++|+++
T Consensus        87 ~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189         87 FSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            45677778899999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      ..... ..+....+++++|+..+.+++..
T Consensus       167 ~~~~~-~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        167 YRALW-LYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHH-HHHHHccCCHHHHHHHHHHHHhh
Confidence            43222 22345577899999999877654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.37  E-value=1.8e-11  Score=114.33  Aligned_cols=108  Identities=6%  Similarity=-0.073  Sum_probs=101.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG   89 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la   89 (281)
                      -+..++.+..+|.+....|.+++|...+..+++..|++..+..+++.++.+++++++|+..+++++..+|+++.+++.+|
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a  161 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA  161 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            35568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           90 QTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        90 ~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      .++.++|++++|+..|++++..+|++..
T Consensus       162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~  189 (694)
T PRK15179        162 KSWDEIGQSEQADACFERLSRQHPEFEN  189 (694)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCCcHH
Confidence            9999999999999999999997666444

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.37  E-value=2e-11  Score=97.68  Aligned_cols=122  Identities=19%  Similarity=0.181  Sum_probs=106.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH-HHhcC--hHHHHH
Q 023501           27 KDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL-LQRNE--YADGIK  103 (281)
Q Consensus        27 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~-~~~g~--~~~A~~  103 (281)
                      .++.++++..+.+++..+|+++..|..+|.+|..+|++++|+..+++|++++|+++..+..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            567799999999999999999999999999999999999999999999999999999999999985 67787  599999


Q ss_pred             HHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501          104 ELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus       104 ~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      .++++++++|++..                .....+....+.++++++....+++++..+.
T Consensus       132 ~l~~al~~dP~~~~----------------al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        132 MIDKALALDANEVT----------------ALMLLASDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             HHHHHHHhCCCChh----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            99999999988443                2333344455678899999999999887654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.37  E-value=8.3e-11  Score=104.06  Aligned_cols=111  Identities=22%  Similarity=0.220  Sum_probs=87.8

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 023501            4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV-----PIYWTNRALCHLKRNDWTKVEADCRKAIQLD   78 (281)
Q Consensus         4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~   78 (281)
                      +.+....+.....+..+|..+.+.|++++|+..|.+++...|.+     ..++.++|.++...|++++|+..++++++.+
T Consensus       131 ~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  210 (389)
T PRK11788        131 LQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD  210 (389)
T ss_pred             HHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC
Confidence            34444456677778888888888888888888888888877764     2356678888888888888888888888888


Q ss_pred             CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           79 HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        79 p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      |.+..+++.+|.++...|++++|+..+.+++..+|.
T Consensus       211 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  246 (389)
T PRK11788        211 PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE  246 (389)
T ss_pred             cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence            888888888888888888888888888888877654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.37  E-value=2.7e-11  Score=120.82  Aligned_cols=115  Identities=22%  Similarity=0.308  Sum_probs=101.5

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH--------------HHHHHHHHHHHhcCHHHHH
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPI--------------YWTNRALCHLKRNDWTKVE   68 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~a~~~~~~~~~~~A~   68 (281)
                      +++++...|+.+..+..+|..+++.|++++|+.+|+++++.+|++..              ....+|.++...|++++|+
T Consensus       292 l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~  371 (1157)
T PRK11447        292 LQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAE  371 (1157)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHH
Confidence            55667778888999999999999999999999999999999997642              2235578888999999999


Q ss_pred             HHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           69 ADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        69 ~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      ..++++++++|.+..+++.+|.++...|++++|+..|+++++++|++..
T Consensus       372 ~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~  420 (1157)
T PRK11447        372 RLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN  420 (1157)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999999999999999999999999887543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=2.3e-11  Score=100.11  Aligned_cols=115  Identities=25%  Similarity=0.289  Sum_probs=106.1

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhcC
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN---DWTKVEADCRKAIQLDH   79 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p   79 (281)
                      |+..+..+|++++-|..+|.+|+..|++..|...|.+|+++.|+++.++..+|.+++-..   .-.++...+++++++||
T Consensus       145 Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~  224 (287)
T COG4235         145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP  224 (287)
T ss_pred             HHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence            456677899999999999999999999999999999999999999999999999887554   46889999999999999


Q ss_pred             cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           80 DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        80 ~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      .++.+.+.+|..+++.|+|.+|+..|+..+++.|...+
T Consensus       225 ~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         225 ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            99999999999999999999999999999999876444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.37  E-value=2e-11  Score=95.72  Aligned_cols=108  Identities=18%  Similarity=0.208  Sum_probs=93.9

Q ss_pred             hhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501            7 LAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK   83 (281)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (281)
                      +...+..+..+..+|..+...|++++|+.+|.+++...|+.   +.++.++|.++..+|++++|+..+++++.+.|.+..
T Consensus        28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  107 (172)
T PRK02603         28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS  107 (172)
T ss_pred             cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence            34466788899999999999999999999999999987763   579999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcC--------------hHHHHHHHHHHHhhccC
Q 023501           84 GHYLLGQTLLQRNE--------------YADGIKELEKALNLGRG  114 (281)
Q Consensus        84 a~~~la~~~~~~g~--------------~~~A~~~~~kal~~~p~  114 (281)
                      ++..+|.++..+|+              +++|++.+++++.++|+
T Consensus       108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~  152 (172)
T PRK02603        108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN  152 (172)
T ss_pred             HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence            99999999999887              45566666666666554

>PRK15331 chaperone protein SicA; Provisional

Probab=99.36  E-value=2.1e-11  Score=92.21  Aligned_cols=106  Identities=13%  Similarity=0.031  Sum_probs=100.4

Q ss_pred             hhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHH
Q 023501            6 GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGH   85 (281)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~   85 (281)
                      ....+++..+..+..|..+|..|++++|...|+-....+|.++..+.++|.|+..+++|++|+..|..|..++++++...
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~  108 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV  108 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence            34456778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           86 YLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        86 ~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      +..|++++.+|+.+.|...|..++..
T Consensus       109 f~agqC~l~l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        109 FFTGQCQLLMRKAAKARQCFELVNER  134 (165)
T ss_pred             chHHHHHHHhCCHHHHHHHHHHHHhC
Confidence            99999999999999999999999874

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.34  E-value=2.8e-11  Score=97.27  Aligned_cols=106  Identities=20%  Similarity=0.216  Sum_probs=99.6

Q ss_pred             hchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHH
Q 023501            8 AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYL   87 (281)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (281)
                      ...++....+..+|...+..|+|.+|+..+.++....|+|+.+|+.+|.+|.++|++++|...|.+++++.|+.+....+
T Consensus        94 ~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nN  173 (257)
T COG5010          94 IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANN  173 (257)
T ss_pred             ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhh
Confidence            34566777888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501           88 LGQTLLQRNEYADGIKELEKALNLGR  113 (281)
Q Consensus        88 la~~~~~~g~~~~A~~~~~kal~~~p  113 (281)
                      +|..|+-.|+++.|..++..+....+
T Consensus       174 lgms~~L~gd~~~A~~lll~a~l~~~  199 (257)
T COG5010         174 LGMSLLLRGDLEDAETLLLPAYLSPA  199 (257)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence            99999999999999999999987744

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.34  E-value=2.4e-12  Score=111.40  Aligned_cols=102  Identities=33%  Similarity=0.509  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL   92 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~   92 (281)
                      .|..++..|+.++.-++|+.|+..|++||+++|+.+.++.+||.++.+.++|..|+.|+.+|++++|...++|++.|.+.
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~   82 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV   82 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcChHHHHHHHHHHHhhccC
Q 023501           93 LQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        93 ~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +.++++.+|...|++...+.|+
T Consensus        83 m~l~~~~~A~~~l~~~~~l~Pn  104 (476)
T KOG0376|consen   83 MALGEFKKALLDLEKVKKLAPN  104 (476)
T ss_pred             HhHHHHHHHHHHHHHhhhcCcC
Confidence            9999999999999999999887

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.34  E-value=4.7e-11  Score=112.25  Aligned_cols=101  Identities=16%  Similarity=0.158  Sum_probs=94.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHH----HHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501           17 LRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTK----VEADCRKAIQLDHDSVKGHYLLGQTL   92 (281)
Q Consensus        17 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~----A~~~~~~al~l~p~~~~a~~~la~~~   92 (281)
                      ....|..+...|++++|+..|.+++...|+++.++.++|.++...|++++    |+..++++++++|+++.++..+|.++
T Consensus       215 ~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  294 (656)
T PRK15174        215 AGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADAL  294 (656)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999986    89999999999999999999999999


Q ss_pred             HHhcChHHHHHHHHHHHhhccCCCC
Q 023501           93 LQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        93 ~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      ...|++++|+..+++++.++|++..
T Consensus       295 ~~~g~~~eA~~~l~~al~l~P~~~~  319 (656)
T PRK15174        295 IRTGQNEKAIPLLQQSLATHPDLPY  319 (656)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999887543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.34  E-value=5.9e-11  Score=105.00  Aligned_cols=104  Identities=17%  Similarity=0.118  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch-----hHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV-----KGHY   86 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-----~a~~   86 (281)
                      .....+..+|..++..|++++|+..|.++++..|.+..++..++.++.+.|++++|+..++++++.+|.+.     ..+.
T Consensus       105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  184 (389)
T PRK11788        105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYC  184 (389)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            34567888899999999999999999999998888888999999999999999999999999998887653     3566


Q ss_pred             HHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           87 LLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        87 ~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      .+|.++...|++++|+..|.++++..|+.
T Consensus       185 ~la~~~~~~~~~~~A~~~~~~al~~~p~~  213 (389)
T PRK11788        185 ELAQQALARGDLDAARALLKKALAADPQC  213 (389)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence            78889999999999999999999887763

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=9.2e-11  Score=93.29  Aligned_cols=103  Identities=25%  Similarity=0.359  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCc----------hHHHHHHHHHHHHhcCHHHHHHHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNV----------PIYWTNRALCHLKRNDWTKVEADCRK   73 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~   73 (281)
                      +...++...||.+|+.|+|.+|...|..||..        .|.+          ..++.|.++|++..|+|-++++.+..
T Consensus       176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se  255 (329)
T KOG0545|consen  176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE  255 (329)
T ss_pred             hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence            34567889999999999999999999999854        3443          46899999999999999999999999


Q ss_pred             HHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           74 AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        74 al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +++.+|.|.+|||+.|.+....=+..+|...|.++++++|.
T Consensus       256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps  296 (329)
T KOG0545|consen  256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS  296 (329)
T ss_pred             HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence            99999999999999999999999999999999999999886

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.30  E-value=3.4e-10  Score=94.28  Aligned_cols=147  Identities=20%  Similarity=0.211  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL   93 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~   93 (281)
                      -..+......++..|++..||.+.+..+++.|.++.++..||.||...|+...|+.+++.|-++..++.+++|..+.+++
T Consensus       155 ~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y  234 (504)
T KOG0624|consen  155 HWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLY  234 (504)
T ss_pred             HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            34566677788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501           94 QRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus        94 ~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      ..|+.+.++...+.+|+++|+...    .-..+..+.++.+.+..++...+.+.+.+..+.-++.++.++.
T Consensus       235 ~vgd~~~sL~~iRECLKldpdHK~----Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~  301 (504)
T KOG0624|consen  235 TVGDAENSLKEIRECLKLDPDHKL----CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE  301 (504)
T ss_pred             hhhhHHHHHHHHHHHHccCcchhh----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc
Confidence            999999999999999999887333    4566777888888888888888888888888888888887765

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.30  E-value=1.3e-10  Score=102.40  Aligned_cols=172  Identities=17%  Similarity=0.098  Sum_probs=124.2

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----------------------------------
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV----------------------------------   47 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------------------   47 (281)
                      .+|.++..+|+.+++|..+|.+....++=..||..+.++++++|++                                  
T Consensus       307 afEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y  386 (579)
T KOG1125|consen  307 AFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKY  386 (579)
T ss_pred             HHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccc
Confidence            5678888899999999999999998888888888888888888875                                  


Q ss_pred             -------------------------------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501           48 -------------------------------------------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG   84 (281)
Q Consensus        48 -------------------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (281)
                                                                 +.+...+|..|...|+|++|++.|+.||..+|++...
T Consensus       387 ~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~l  466 (579)
T KOG1125|consen  387 VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLL  466 (579)
T ss_pred             hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHH
Confidence                                                       4667777777777778888888888888888888888


Q ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501           85 HYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus        85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      |.+||-++..-.+.++|+..|.+|+++.|+.-.                .....+-.....+-+.++.+.+..+|...+.
T Consensus       467 WNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR----------------~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  467 WNRLGATLANGNRSEEAISAYNRALQLQPGYVR----------------VRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             HHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee----------------eehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            888888888888888888888888888776332                2333444556678888888888888775433


Q ss_pred             hhhhhhccchhhhhhHHHHHHHHHHHHHHHh
Q 023501          165 LDISRKEGFLDEASSTHLKQMEALRQVFRKA  195 (281)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  195 (281)
                      ......      ....-+..|+.|+-.|...
T Consensus       531 s~~~~~------~~~~se~iw~tLR~als~~  555 (579)
T KOG1125|consen  531 SRNHNK------APMASENIWQTLRLALSAM  555 (579)
T ss_pred             cccccc------CCcchHHHHHHHHHHHHHc
Confidence            111100      1111355677777555443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.28  E-value=1.5e-10  Score=90.38  Aligned_cols=106  Identities=19%  Similarity=0.152  Sum_probs=91.0

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHH
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN---VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGH   85 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~   85 (281)
                      .....+..+...|..+...|+|++|+..|.+++.+.|+   .+.++.++|.++...|++++|+..+++|+.++|.+..++
T Consensus        30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~  109 (168)
T CHL00033         30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL  109 (168)
T ss_pred             chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence            34557888999999999999999999999999998776   356899999999999999999999999999999999999


Q ss_pred             HHHHHHHH-------HhcChH-------HHHHHHHHHHhhccC
Q 023501           86 YLLGQTLL-------QRNEYA-------DGIKELEKALNLGRG  114 (281)
Q Consensus        86 ~~la~~~~-------~~g~~~-------~A~~~~~kal~~~p~  114 (281)
                      ..+|.++.       .+|+++       +|+..|++++..+|.
T Consensus       110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033        110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            99999999       777766       555555566666554

>PLN02789 farnesyltranstransferase

Probab=99.27  E-value=9.7e-11  Score=100.19  Aligned_cols=116  Identities=12%  Similarity=0.013  Sum_probs=106.5

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCH--HHHHHHHHHHHhhc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKD-RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDW--TKVEADCRKAIQLD   78 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~l~   78 (281)
                      +.++++...|+...+|..+|..+...| ++++|+.++++++..+|++..+|.+|+.++.++|+.  ++++..++++++++
T Consensus        59 lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d  138 (320)
T PLN02789         59 LTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD  138 (320)
T ss_pred             HHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC
Confidence            345677888999999999999999998 689999999999999999999999999999999874  78899999999999


Q ss_pred             CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           79 HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        79 p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      |.|..+|..+|.++..+|++++|++.+.++++.+|.+..
T Consensus       139 pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s  177 (320)
T PLN02789        139 AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS  177 (320)
T ss_pred             cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh
Confidence            999999999999999999999999999999999887544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.27  E-value=1.3e-10  Score=116.07  Aligned_cols=115  Identities=17%  Similarity=0.132  Sum_probs=101.3

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHH-------------------------
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALC-------------------------   57 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~-------------------------   57 (281)
                      +++++...|..+..+..+|..+...|++++|+..|++++..+|++..++.+++.+                         
T Consensus       374 ~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~  453 (1157)
T PRK11447        374 YQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSID  453 (1157)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHH
Confidence            4556666778888999999999999999999999999999999987766555444                         


Q ss_pred             -----------------HHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           58 -----------------HLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        58 -----------------~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                                       +...|++++|+..++++++++|+++.+++.+|.+|..+|++++|+..+++++...|....
T Consensus       454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~  530 (1157)
T PRK11447        454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE  530 (1157)
T ss_pred             HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence                             446799999999999999999999999999999999999999999999999999886443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.26  E-value=2.8e-11  Score=78.82  Aligned_cols=64  Identities=20%  Similarity=0.327  Sum_probs=43.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501           19 LDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus        19 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      .+|..++..|+|++|+..|++++..+|+++.++..+|.++..+|++++|+..++++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4566667777777777777777777777777777777777777777777777777777776653

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.26  E-value=2.5e-10  Score=93.99  Aligned_cols=103  Identities=18%  Similarity=0.202  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH---HHHHHHHHHHHh--------cCHHHHHHHHHHHHhhcCcc
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPI---YWTNRALCHLKR--------NDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~--------~~~~~A~~~~~~al~l~p~~   81 (281)
                      ...++..+|..++..|++++|+..|.++++..|+++.   +++.+|.++...        |++++|+..++++++.+|.+
T Consensus        69 ~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  148 (235)
T TIGR03302        69 AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS  148 (235)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence            4467899999999999999999999999999998776   689999999887        88999999999999999998


Q ss_pred             hhHH-----------------HHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           82 VKGH-----------------YLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        82 ~~a~-----------------~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      ..++                 +.+|..+...|++.+|+..+.+++...|+.
T Consensus       149 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~  199 (235)
T TIGR03302       149 EYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDT  199 (235)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Confidence            6543                 467888999999999999999999998763

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.25  E-value=2.9e-10  Score=106.34  Aligned_cols=111  Identities=11%  Similarity=-0.075  Sum_probs=107.3

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      +|+.+.+..|+.+.+....|..+.+.+++++|+..+++++..+|+++.+++.+|.++.++|++++|+..|++++..+|++
T Consensus       108 ~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~  187 (694)
T PRK15179        108 VWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF  187 (694)
T ss_pred             HHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence            46677888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                      ..++..+|.++..+|+.++|...|+++++..
T Consensus       188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        188 ENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999984

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.25  E-value=3.5e-10  Score=109.51  Aligned_cols=110  Identities=24%  Similarity=0.323  Sum_probs=84.8

Q ss_pred             hhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501            5 AGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG   84 (281)
Q Consensus         5 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (281)
                      .+....|.....+..+|..+...|++++|+..+.+++...|.++.+|..+|.++...|++++|+..++++++.+|.++.+
T Consensus       558 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  637 (899)
T TIGR02917       558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA  637 (899)
T ss_pred             HHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence            33444455556666777777777788888888887777777778888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           85 HYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +..+|.++...|++++|+..|.+++...|+
T Consensus       638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  667 (899)
T TIGR02917       638 LLLLADAYAVMKNYAKAITSLKRALELKPD  667 (899)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            888888888888888888888888877665

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.24  E-value=3e-11  Score=102.20  Aligned_cols=104  Identities=20%  Similarity=0.227  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ   90 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~   90 (281)
                      +.++..+...|..+.+.|++++|+..|+++++.+|+++.+...++.++...|+++++...+....+..|.++..+..+|.
T Consensus       143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~  222 (280)
T PF13429_consen  143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA  222 (280)
T ss_dssp             -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            56778888999999999999999999999999999999999999999999999999888888888888888888899999


Q ss_pred             HHHHhcChHHHHHHHHHHHhhccC
Q 023501           91 TLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        91 ~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ++..+|++++|+.+|+++++..|+
T Consensus       223 ~~~~lg~~~~Al~~~~~~~~~~p~  246 (280)
T PF13429_consen  223 AYLQLGRYEEALEYLEKALKLNPD  246 (280)
T ss_dssp             HHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred             Hhcccccccccccccccccccccc
Confidence            999999999999999999998776

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.23  E-value=2.1e-10  Score=111.11  Aligned_cols=99  Identities=17%  Similarity=0.145  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ   94 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~   94 (281)
                      ..+..+|..+...|++++|+..+.+++...|++..++..+|.+|..+|++++|+..++++++.+|+++.++..+|.++..
T Consensus       737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  816 (899)
T TIGR02917       737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE  816 (899)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            44455666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hcChHHHHHHHHHHHhhccC
Q 023501           95 RNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        95 ~g~~~~A~~~~~kal~~~p~  114 (281)
                      .|+ .+|+..+++++.+.|+
T Consensus       817 ~~~-~~A~~~~~~~~~~~~~  835 (899)
T TIGR02917       817 LKD-PRALEYAEKALKLAPN  835 (899)
T ss_pred             cCc-HHHHHHHHHHHhhCCC
Confidence            666 5566666666666554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=1.6e-09  Score=93.38  Aligned_cols=149  Identities=16%  Similarity=0.090  Sum_probs=123.5

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501            4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK   83 (281)
Q Consensus         4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (281)
                      ..|++..|..-++|+-+|+.|--.+...=|+-+|++|+...|+|+..|..+|.||.++++.++|++.|.+|+.....+..
T Consensus       388 RrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~  467 (559)
T KOG1155|consen  388 RRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS  467 (559)
T ss_pred             HHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence            35777889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           84 GHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEE  161 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (281)
                      ++.++|.+|.++++..+|.+.|++.++..-..+.       +...+  .+...+.+.-..+.+.++++..+....+..
T Consensus       468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~-------~~~~t--~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGE-------IDDET--IKARLFLAEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc-------cchHH--HHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence            9999999999999999999999999985311111       11111  123344555556667777777777776653

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=99.22  E-value=3.3e-12  Score=104.85  Aligned_cols=65  Identities=29%  Similarity=0.392  Sum_probs=60.6

Q ss_pred             CcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHH
Q 023501          206 DYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYM  271 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~  271 (281)
                      +-+.|.||++.|.-|++||||||||.-||..+|...+. ||.|..++....|..|..|.++|+.|-
T Consensus        22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~-CP~C~~~~~Es~Lr~n~il~Eiv~S~~   86 (442)
T KOG0287|consen   22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQ-CPTCCVTVTESDLRNNRILDEIVKSLN   86 (442)
T ss_pred             HHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCC-CCceecccchhhhhhhhHHHHHHHHHH
Confidence            45789999999999999999999999999999998885 999999999999999999999999883

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=5.9e-12  Score=98.83  Aligned_cols=57  Identities=23%  Similarity=0.427  Sum_probs=49.8

Q ss_pred             CCcccccCCcccccCceecCCCcccccchHHhHhccCCC--CCCCCCCCcCCCCCcccH
Q 023501          205 PDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGK--FDPITREPLRESQLVPNL  261 (281)
Q Consensus       205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~--~cP~~~~~~~~~~~~~n~  261 (281)
                      -..|.|.||.+.-+|||+|.|||-||.-||.+|+.....  .||+|+..++.+.++|=+
T Consensus        45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY  103 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY  103 (230)
T ss_pred             CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence            357999999999999999999999999999999975433  599999999888887754

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.20  E-value=3.3e-10  Score=84.93  Aligned_cols=113  Identities=13%  Similarity=0.003  Sum_probs=95.3

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           35 DAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        35 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ..|.+++..+|++......+|.++...|++++|...+++++.++|.++.+++.+|.++..+|++++|+..+++++..+|.
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501          115 AKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKH  163 (281)
Q Consensus       115 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (281)
                      +...                ....+......++.+.+...++.+++..+
T Consensus        84 ~~~~----------------~~~la~~~~~~g~~~~A~~~~~~al~~~p  116 (135)
T TIGR02552        84 DPRP----------------YFHAAECLLALGEPESALKALDLAIEICG  116 (135)
T ss_pred             ChHH----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            4332                12222233345667777788888887654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=2e-10  Score=101.01  Aligned_cols=112  Identities=18%  Similarity=0.168  Sum_probs=102.0

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-------CchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCP-------NVPIYWTNRALCHLKRNDWTKVEADCRKAI   75 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   75 (281)
                      +..|....|..+-++.++|.+.|..+.|.+|+.+|+.++..-+       .....+.|+|.++.+++.+++|+..+++|+
T Consensus       403 f~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL  482 (611)
T KOG1173|consen  403 FKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL  482 (611)
T ss_pred             HHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            4456777888999999999999999999999999999984422       245679999999999999999999999999


Q ss_pred             hhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           76 QLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        76 ~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .+.|.++.+|-.+|.+|..+|+++.|++.|.|+|.+.|+
T Consensus       483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~  521 (611)
T KOG1173|consen  483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD  521 (611)
T ss_pred             HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence            999999999999999999999999999999999999887

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.16  E-value=1.3e-10  Score=75.64  Aligned_cols=64  Identities=27%  Similarity=0.424  Sum_probs=59.5

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           52 TNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        52 ~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      +.+|..++..|+|++|+..++++++.+|.++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            3578899999999999999999999999999999999999999999999999999999998873

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=2.1e-11  Score=98.61  Aligned_cols=56  Identities=21%  Similarity=0.377  Sum_probs=49.0

Q ss_pred             CCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCc
Q 023501          202 AEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLV  258 (281)
Q Consensus       202 ~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~  258 (281)
                      ...+....|.||.+-+++|..|||||.||.+||..|.....- ||+||+++++.+++
T Consensus       234 ~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~e-CPlCR~~~~pskvi  289 (293)
T KOG0317|consen  234 SIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAE-CPLCREKFQPSKVI  289 (293)
T ss_pred             cCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccC-CCcccccCCCccee
Confidence            344466999999999999999999999999999999987774 99999999876553

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.14  E-value=5.4e-10  Score=101.47  Aligned_cols=115  Identities=20%  Similarity=0.129  Sum_probs=107.3

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHH--HHHHHHhhcC
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEA--DCRKAIQLDH   79 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~--~~~~al~l~p   79 (281)
                      +|.++-...+..+..++..|..+..+|.+.+|...|..|+.++|+++.....+|.++.+.|+..-|.+  .+..++++||
T Consensus       672 CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp  751 (799)
T KOG4162|consen  672 CLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP  751 (799)
T ss_pred             HHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence            45666677788899999999999999999999999999999999999999999999999999888888  9999999999


Q ss_pred             cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCC
Q 023501           80 DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK  116 (281)
Q Consensus        80 ~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~  116 (281)
                      .++++||.+|.++..+|+.++|.+.|..++.+.+..+
T Consensus       752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            9999999999999999999999999999999976643

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.14  E-value=4.3e-10  Score=98.12  Aligned_cols=95  Identities=13%  Similarity=0.124  Sum_probs=88.9

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      ++.+++...|..+..+..+|..++..|+|++|+..+.+++.++|.++.+|+.+|.+|+.+|+|++|+..++++++++|++
T Consensus        24 ~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~  103 (356)
T PLN03088         24 LYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGD  103 (356)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence            45677888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhc
Q 023501           82 VKGHYLLGQTLLQRN   96 (281)
Q Consensus        82 ~~a~~~la~~~~~~g   96 (281)
                      ..++..++.+...+.
T Consensus       104 ~~~~~~l~~~~~kl~  118 (356)
T PLN03088        104 SRFTKLIKECDEKIA  118 (356)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999888866663

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.14  E-value=1.6e-09  Score=90.19  Aligned_cols=102  Identities=11%  Similarity=0.064  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc---chhHHH
Q 023501           14 AEQLRLDGNYY-FSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD---SVKGHY   86 (281)
Q Consensus        14 a~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~   86 (281)
                      ....+..|..+ ++.|+|++|+..|...+...|++   +.+++.+|.+|+..|++++|+..|.++++..|+   .+.+++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            46677777776 67899999999999999999997   579999999999999999999999999998877   478999


Q ss_pred             HHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           87 LLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        87 ~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      .+|.++..+|++++|...|+++++..|++
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            99999999999999999999999998873

>PLN02789 farnesyltranstransferase

Probab=99.13  E-value=2.9e-09  Score=91.19  Aligned_cols=139  Identities=17%  Similarity=0.108  Sum_probs=111.0

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN-DWTKVEADCRKAIQLDHDSVKGHYLL   88 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~l   88 (281)
                      .++..+++.-+-..+...+++++|+..++++|.++|.+..+|..|+.++..+| ++++++..++++++.+|++..+|+.+
T Consensus        33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R  112 (320)
T PLN02789         33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR  112 (320)
T ss_pred             CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH
Confidence            45556666556666778889999999999999999999999999999999999 68999999999999999999999999


Q ss_pred             HHHHHHhcCh--HHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501           89 GQTLLQRNEY--ADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus        89 a~~~~~~g~~--~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      +.++..+|+.  ++++..+.++++++|.+..       ++...+.+..         ..+.++++...+.++|+.++.
T Consensus       113 ~~~l~~l~~~~~~~el~~~~kal~~dpkNy~-------AW~~R~w~l~---------~l~~~~eeL~~~~~~I~~d~~  174 (320)
T PLN02789        113 RWLAEKLGPDAANKELEFTRKILSLDAKNYH-------AWSHRQWVLR---------TLGGWEDELEYCHQLLEEDVR  174 (320)
T ss_pred             HHHHHHcCchhhHHHHHHHHHHHHhCcccHH-------HHHHHHHHHH---------HhhhHHHHHHHHHHHHHHCCC
Confidence            9999999974  7889999999999887332       2322222222         224466677777777776543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.13  E-value=6.6e-09  Score=90.38  Aligned_cols=148  Identities=18%  Similarity=0.103  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT   91 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~   91 (281)
                      ......+-.+..++..|.+++|...++..+...|+|+.++..++.++++.|+.++|.+.+++++.++|..+-..+.+|++
T Consensus       304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a  383 (484)
T COG4783         304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA  383 (484)
T ss_pred             cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence            44556666677777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 023501           92 LLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLW-EQESSKRSWELQSLKEACEAAL  159 (281)
Q Consensus        92 ~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l  159 (281)
                      |++.|++.+|+..++..+.-+|+.+.....+......++....... ..+.....+.++.++..+..+.
T Consensus       384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~  452 (484)
T COG4783         384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRAS  452 (484)
T ss_pred             HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            7777777777777777777666644433333333333333322222 2222233344455544444443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.13  E-value=7.2e-10  Score=106.24  Aligned_cols=108  Identities=11%  Similarity=0.129  Sum_probs=102.0

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL   88 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (281)
                      ..+..+..+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|+++. ++.+
T Consensus        44 ~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~l  122 (765)
T PRK10049         44 HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLAL  122 (765)
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHH
Confidence            345667789999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           89 GQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        89 a~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      |.++...|++++|+..+++++++.|++..
T Consensus       123 a~~l~~~g~~~~Al~~l~~al~~~P~~~~  151 (765)
T PRK10049        123 AYVYKRAGRHWDELRAMTQALPRAPQTQQ  151 (765)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999999999988544

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.13  E-value=2.7e-10  Score=93.43  Aligned_cols=98  Identities=16%  Similarity=0.126  Sum_probs=90.3

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      .+.+|+..+|++|-.|-+++.+|.+.|.|+.|++-+..||.++|..+.+|..+|.+|+.+|++++|+..|++||.++|+|
T Consensus       103 kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~N  182 (304)
T KOG0553|consen  103 KYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDN  182 (304)
T ss_pred             HHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCc
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcChH
Q 023501           82 VKGHYLLGQTLLQRNEYA   99 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~   99 (281)
                      ....-.|..+-..+++..
T Consensus       183 e~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  183 ESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHHHHHHHHHhcCCC
Confidence            987777777766666554

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=99.13  E-value=2.4e-11  Score=97.80  Aligned_cols=64  Identities=28%  Similarity=0.294  Sum_probs=58.7

Q ss_pred             CcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHH
Q 023501          206 DYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAY  270 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~  270 (281)
                      ..+.|-||...++-|++|+|||+||.-||..||...+ .||+|+.+....-+..+..++.+++-|
T Consensus        24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp-~CP~Cr~~~~esrlr~~s~~~ei~es~   87 (391)
T COG5432          24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQP-FCPVCREDPCESRLRGSSGSREINESH   87 (391)
T ss_pred             hHHHhhhhhheeecceecccccchhHHHHHHHhcCCC-CCccccccHHhhhcccchhHHHHHHhh
Confidence            4578999999999999999999999999999999887 499999999988899998888888877

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.13  E-value=2.7e-11  Score=70.10  Aligned_cols=38  Identities=39%  Similarity=0.669  Sum_probs=32.7

Q ss_pred             ccCCcccccCc-eecCCCcccccchHHhHhccCCCCCCCC
Q 023501          210 CKITLDIFRDP-VITPSGVTYERAVILDHLDKVGKFDPIT  248 (281)
Q Consensus       210 c~i~~~~~~~p-v~~~~g~~~~~~~i~~~~~~~~~~cP~~  248 (281)
                      ||||.+.+.+| |+++|||+||+.||.+|+..+. .||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~-~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNP-KCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTS-B-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcC-CCcCC
Confidence            79999999999 5799999999999999999854 69987

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.12  E-value=3.1e-10  Score=74.51  Aligned_cols=68  Identities=24%  Similarity=0.328  Sum_probs=61.9

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501           24 YFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT   91 (281)
Q Consensus        24 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~   91 (281)
                      +++.|+|++|+..|++++..+|++..++..+|.||++.|++++|...+++++..+|+++..+..++.+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            46789999999999999999999999999999999999999999999999999999998888777753

...

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=99.11  E-value=7e-11  Score=73.54  Aligned_cols=58  Identities=21%  Similarity=0.365  Sum_probs=33.2

Q ss_pred             cccccCCcccccCcee-cCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHH
Q 023501          207 YLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAV  267 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i  267 (281)
                      .+.|++|..+|+.||. +.|.|.||+.||.+.+.  . .||+|..|--..++.-|..|.++|
T Consensus         7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~-~CPvC~~Paw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--S-ECPVCHTPAWIQDIQINRQLDSMI   65 (65)
T ss_dssp             TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--T-B-SSS--B-S-SS----HHHHHHH
T ss_pred             hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--C-CCCCcCChHHHHHHHhhhhhhccC
Confidence            4679999999999995 78999999999999775  2 399999999989999999888765

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.11  E-value=6.1e-10  Score=74.17  Aligned_cols=70  Identities=23%  Similarity=0.470  Sum_probs=60.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501           21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ   90 (281)
Q Consensus        21 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~   90 (281)
                      ...+++.++|++|+.++++++..+|+++.++..+|.++..+|++.+|..+++++++.+|+++.+...++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            4678888999999999999999999999999999999999999999999999999999988877665543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.10  E-value=1.2e-08  Score=82.14  Aligned_cols=149  Identities=19%  Similarity=0.176  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch---hHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV---KGH   85 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~   85 (281)
                      ..+..++..|..++..|+|.+|+..|++.+...|..   ..+...+|.++++.|+|+.|+..+++.++..|.++   .++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            467889999999999999999999999999998874   57889999999999999999999999999999864   589


Q ss_pred             HHHHHHHHHhcC-----------hHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 023501           86 YLLGQTLLQRNE-----------YADGIKELEKALNLGRGAKPKGYIVEDIWQELARA-----KYLLWEQESSKRSWELQ  149 (281)
Q Consensus        86 ~~la~~~~~~g~-----------~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~  149 (281)
                      +.+|.+++.+..           ..+|+..|+..+..-|++.-.    ......+..+     ...+..++-..+.+.+.
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~----~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~  158 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA----EEAKKRLAELRNRLAEHELYIARFYYKRGKYK  158 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence            999999877642           458999999999998885443    3333322222     23344455566778888


Q ss_pred             HHHHHHHHHHHHhhh
Q 023501          150 SLKEACEAALEEKHV  164 (281)
Q Consensus       150 ~~~~~~~~~l~~~~~  164 (281)
                      .+...++.+++..+.
T Consensus       159 aA~~r~~~v~~~yp~  173 (203)
T PF13525_consen  159 AAIIRFQYVIENYPD  173 (203)
T ss_dssp             HHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHCCC
Confidence            888888888887664

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.09  E-value=1.5e-08  Score=83.56  Aligned_cols=149  Identities=14%  Similarity=0.097  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHH---HHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYW---TNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGH   85 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~   85 (281)
                      ..+..++..|..++..|+|++|+..|++++...|..+.+.   ..+|.+|++.++|++|+..+++.+++.|++   +.++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            3577788999999999999999999999999999876544   889999999999999999999999999877   4688


Q ss_pred             HHHHHHHHHhcC------------------hHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHH-----HHHHHHHHHH
Q 023501           86 YLLGQTLLQRNE------------------YADGIKELEKALNLGRGAKPKGYIVEDIWQELARA-----KYLLWEQESS  142 (281)
Q Consensus        86 ~~la~~~~~~g~------------------~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~  142 (281)
                      |.+|.++..+++                  -.+|+..|++.++.-|++.-    .......+..+     +..+..++-.
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y----a~~A~~rl~~l~~~la~~e~~ia~~Y  185 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY----TTDATKRLVFLKDRLAKYELSVAEYY  185 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988755541                  25788999999999887433    23333322222     2334445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Q 023501          143 KRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus       143 ~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      .+.+.+..+...++.+++..+.
T Consensus       186 ~~~~~y~AA~~r~~~v~~~Yp~  207 (243)
T PRK10866        186 TKRGAYVAVVNRVEQMLRDYPD  207 (243)
T ss_pred             HHcCchHHHHHHHHHHHHHCCC
Confidence            5667777888888888876654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.08  E-value=7.2e-09  Score=74.77  Aligned_cols=101  Identities=21%  Similarity=0.240  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc----hhHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS----VKGHYL   87 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----~~a~~~   87 (281)
                      +....+...|..+...|+.+.|++.|.+++.+.|.++.+|+|+|+++.-.|+.++|++++++|+++.-..    -.+|..
T Consensus        41 e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQ  120 (175)
T KOG4555|consen   41 KASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQ  120 (175)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence            4456677889999999999999999999999999999999999999999999999999999999997543    357889


Q ss_pred             HHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           88 LGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        88 la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                      .|.+|..+|+-+.|...|+.+-.+.
T Consensus       121 Rg~lyRl~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  121 RGLLYRLLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             HHHHHHHhCchHHHHHhHHHHHHhC
Confidence            9999999999999999999998883

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.07  E-value=2e-08  Score=92.86  Aligned_cols=102  Identities=18%  Similarity=0.088  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL   93 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~   93 (281)
                      ...+...|+.+|.+|++++|...+.++|.++|.++.+|+-+|.+|-++|+.++|+...-.|--++|.+..-|..++....
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~  218 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE  218 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            56677778888888888888888888888888888888888888888888888888887888888888888888888888


Q ss_pred             HhcChHHHHHHHHHHHhhccCC
Q 023501           94 QRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        94 ~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      ++|.+.+|.-+|.+|++.+|.+
T Consensus       219 ~~~~i~qA~~cy~rAI~~~p~n  240 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQANPSN  240 (895)
T ss_pred             hcccHHHHHHHHHHHHhcCCcc
Confidence            8888888888888888887664

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=5.2e-11  Score=89.40  Aligned_cols=53  Identities=26%  Similarity=0.369  Sum_probs=45.9

Q ss_pred             CcccccCCcccccC--ceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcc
Q 023501          206 DYLCCKITLDIFRD--PVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVP  259 (281)
Q Consensus       206 ~~~~c~i~~~~~~~--pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~  259 (281)
                      ..+.||||++-+..  ||.|.|||.||+.||...++... .||+|++.++.+++.+
T Consensus       130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~-~CP~C~kkIt~k~~~r  184 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTN-KCPTCRKKITHKQFHR  184 (187)
T ss_pred             cccCCCceecchhhccccccccchhHHHHHHHHHHHhCC-CCCCcccccchhhhee
Confidence            34899999998887  77799999999999999999776 5999999998776654

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.06  E-value=1e-10  Score=97.19  Aligned_cols=102  Identities=25%  Similarity=0.371  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT   91 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~   91 (281)
                      +++...+..+..++..|+++.||..|+.+|.++|..+.+|.+|+.++++++++..|+++|..|++++|+..+.|-..|.+
T Consensus       112 eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A  191 (377)
T KOG1308|consen  112 DQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYA  191 (377)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHH
Confidence            45666778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcChHHHHHHHHHHHhhcc
Q 023501           92 LLQRNEYADGIKELEKALNLGR  113 (281)
Q Consensus        92 ~~~~g~~~~A~~~~~kal~~~p  113 (281)
                      ...+|+|++|..++..+.+++-
T Consensus       192 ~rllg~~e~aa~dl~~a~kld~  213 (377)
T KOG1308|consen  192 ERLLGNWEEAAHDLALACKLDY  213 (377)
T ss_pred             HHHhhchHHHHHHHHHHHhccc
Confidence            9999999999999999999953

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=5.7e-09  Score=88.94  Aligned_cols=140  Identities=18%  Similarity=0.152  Sum_probs=118.2

Q ss_pred             hchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------------hHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023501            8 AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------------PIYWTNRALCHLKRNDWTKVEADCRKAI   75 (281)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~~a~~~~~~~~~~~A~~~~~~al   75 (281)
                      +.++.++++++..|..++...+.+.|+.+|++++.++|+.            -..+..+|+-.++.|+|..|.+.|..||
T Consensus       197 kld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal  276 (486)
T KOG0550|consen  197 KLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL  276 (486)
T ss_pred             hcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence            4567889999999999999999999999999999999984            2567788999999999999999999999


Q ss_pred             hhcCcc----hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           76 QLDHDS----VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSL  151 (281)
Q Consensus        76 ~l~p~~----~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  151 (281)
                      .++|.+    .+.|.++|.+...+|+.++|+..++.++++++.         -|...+       ..++.....+++.++
T Consensus       277 ~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s---------yikall-------~ra~c~l~le~~e~A  340 (486)
T KOG0550|consen  277 NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS---------YIKALL-------RRANCHLALEKWEEA  340 (486)
T ss_pred             cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH---------HHHHHH-------HHHHHHHHHHHHHHH
Confidence            999975    678999999999999999999999999999654         344333       344455566777888


Q ss_pred             HHHHHHHHHHhh
Q 023501          152 KEACEAALEEKH  163 (281)
Q Consensus       152 ~~~~~~~l~~~~  163 (281)
                      .+.++++++...
T Consensus       341 V~d~~~a~q~~~  352 (486)
T KOG0550|consen  341 VEDYEKAMQLEK  352 (486)
T ss_pred             HHHHHHHHhhcc
Confidence            888888877643

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.05  E-value=4.7e-09  Score=97.63  Aligned_cols=128  Identities=16%  Similarity=0.132  Sum_probs=111.1

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLD   78 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~   78 (281)
                      ++..+....+.++.++..+++-+|..|+|+.+...+.-++...-..   +..++.+|.+|..+|+|++|..+|.++++.+
T Consensus       258 ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~  337 (1018)
T KOG2002|consen  258 LLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD  337 (1018)
T ss_pred             HHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence            3556677788899999999999999999999999999999887554   4569999999999999999999999999999


Q ss_pred             Ccc-hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHH
Q 023501           79 HDS-VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQEL  129 (281)
Q Consensus        79 p~~-~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l  129 (281)
                      |++ .-.++.+|++++..|+++.|+..|+++++..|++....++.+.++...
T Consensus       338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~  389 (1018)
T KOG2002|consen  338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS  389 (1018)
T ss_pred             CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence            988 889999999999999999999999999999988666544555555444

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.04  E-value=5.9e-09  Score=100.01  Aligned_cols=132  Identities=13%  Similarity=-0.022  Sum_probs=78.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501           17 LRLDGNYYFSKDRYGAAIDAYTEAITLCPN---------------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus        17 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      ...++..+...|++++|+..+.++....|.               ...++..+|.++...|++++|+..+++++...|.+
T Consensus       313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n  392 (765)
T PRK10049        313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN  392 (765)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            344445556666666666666666665542               12345566666666666666666666666666666


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEE  161 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (281)
                      +.+++.+|.++...|++++|++.+++++.+.|++..                .....+....+.+++..+...+..+++.
T Consensus       393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~----------------l~~~~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN----------------LEVEQAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH----------------HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            666666666666666666666666666666655222                1122222344455666777777777765


Q ss_pred             hhh
Q 023501          162 KHV  164 (281)
Q Consensus       162 ~~~  164 (281)
                      .|.
T Consensus       457 ~Pd  459 (765)
T PRK10049        457 EPQ  459 (765)
T ss_pred             CCC
Confidence            543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.04  E-value=4.4e-10  Score=95.12  Aligned_cols=110  Identities=16%  Similarity=0.172  Sum_probs=82.5

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      ++++++...|++......++..+...|+++++...+.......|+++.++..+|.++..+|++++|+..++++++.+|++
T Consensus       168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d  247 (280)
T PF13429_consen  168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD  247 (280)
T ss_dssp             HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence            46678888999999999999999999999999999999888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      +..+..+|.++...|+.++|...+.+++..
T Consensus       248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  248 PLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHHHHHHT------------------
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            999999999999999999999999988764

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.04  E-value=2.1e-08  Score=92.71  Aligned_cols=112  Identities=13%  Similarity=0.114  Sum_probs=108.8

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      ++.+.+..+|..+..|+.+|.+|-++|+.++|..+...|-.++|++...|..++....++|++..|.-+|.+||+++|.+
T Consensus       161 i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n  240 (895)
T KOG2076|consen  161 ILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN  240 (895)
T ss_pred             HHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc
Confidence            56778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGR  113 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p  113 (281)
                      .+..+..+.+|-++|+...|...|.+++.++|
T Consensus       241 ~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  241 WELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999987

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.02  E-value=1.4e-08  Score=76.68  Aligned_cols=105  Identities=10%  Similarity=-0.010  Sum_probs=86.7

Q ss_pred             HHhC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCc
Q 023501           41 ITLC-PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKG  119 (281)
Q Consensus        41 l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~  119 (281)
                      ..+. ++.-...+.+|..++..|++++|...++.++.+||.+...|+.||.++-.+|+|++|+..|.+++.++|+.+.. 
T Consensus        27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~-  105 (157)
T PRK15363         27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA-  105 (157)
T ss_pred             HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH-
Confidence            4456 66777888899999999999999999999999999999999999999999999999999999999999874442 


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501          120 YIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEE  161 (281)
Q Consensus       120 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (281)
                                     ....+......++...+.+.+..++..
T Consensus       106 ---------------~~~ag~c~L~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        106 ---------------PWAAAECYLACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             ---------------HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                           334444455556666677777777654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.02  E-value=1.2e-08  Score=74.34  Aligned_cols=97  Identities=16%  Similarity=-0.013  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc---chhHHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD---SVKGHYLL   88 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~l   88 (281)
                      .++++.|..+-..|+.++|+.+|.+++....+.   ..++..+|.++..+|++++|+..+++++.-.|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            568899999999999999999999999986553   578999999999999999999999999999888   88888999


Q ss_pred             HHHHHHhcChHHHHHHHHHHHhh
Q 023501           89 GQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        89 a~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      +.++...|++++|+..+..++.-
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la~  104 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALAE  104 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHH
Confidence            99999999999999999887753

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.02  E-value=7.6e-09  Score=78.69  Aligned_cols=97  Identities=20%  Similarity=0.223  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL   88 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (281)
                      -.......+|..++..|+|++|+..|..++...|+.   +.+...+|.+++..|+|++|+..++. +.-.+-.+.++..+
T Consensus        46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~  124 (145)
T PF09976_consen   46 YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELL  124 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHH
Confidence            345667778888888899999999998888877654   45777888888888899988888865 34444556788888


Q ss_pred             HHHHHHhcChHHHHHHHHHHH
Q 023501           89 GQTLLQRNEYADGIKELEKAL  109 (281)
Q Consensus        89 a~~~~~~g~~~~A~~~~~kal  109 (281)
                      |.++...|++++|+..|++++
T Consensus       125 Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  125 GDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHCCCHHHHHHHHHHhC
Confidence            999999999999988888774

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.00  E-value=1.8e-08  Score=74.68  Aligned_cols=104  Identities=17%  Similarity=0.203  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch---hHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV---KGH   85 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~   85 (281)
                      ..+..++..|...++.|+|.+|++.|+......|..   ..+...++.+|++.++|++|+..+++-|+++|.++   -++
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            457789999999999999999999999999988874   57889999999999999999999999999999885   588


Q ss_pred             HHHHHHHHHhcC---------------hHHHHHHHHHHHhhccCC
Q 023501           86 YLLGQTLLQRNE---------------YADGIKELEKALNLGRGA  115 (281)
Q Consensus        86 ~~la~~~~~~g~---------------~~~A~~~~~kal~~~p~~  115 (281)
                      |..|.+++.+..               ..+|...|++.+..-|++
T Consensus        88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen   88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence            999999999876               788999999999887774

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.00  E-value=1.5e-08  Score=96.58  Aligned_cols=109  Identities=7%  Similarity=-0.118  Sum_probs=91.5

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL   88 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (281)
                      ..|..+...+..+...++.|+|..|+..|.++++.+|.++.....++.++...|++++|+..+++++.-+|.+..++..+
T Consensus        29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal  108 (822)
T PRK14574         29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA  108 (822)
T ss_pred             cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence            35667889999999999999999999999999999999863333888888899999999999999993334445555555


Q ss_pred             HHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           89 GQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        89 a~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      |.++..+|++++|++.|+++++.+|++..
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~  137 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPD  137 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence            88999999999999999999999988533

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.99  E-value=2.2e-08  Score=87.14  Aligned_cols=111  Identities=21%  Similarity=0.234  Sum_probs=104.4

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      |...+...|+++..+-..|..++..|+..+|++.+.+++.++|+.+.+..++|++|++.|++.+|+..++..+..+|+++
T Consensus       329 l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp  408 (484)
T COG4783         329 LQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP  408 (484)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence            44456677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGR  113 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p  113 (281)
                      ..|..+|++|..+|+-.+|...+-..+.+..
T Consensus       409 ~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G  439 (484)
T COG4783         409 NGWDLLAQAYAELGNRAEALLARAEGYALAG  439 (484)
T ss_pred             hHHHHHHHHHHHhCchHHHHHHHHHHHHhCC
Confidence            9999999999999999999999998888843

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.96  E-value=5.8e-08  Score=81.71  Aligned_cols=215  Identities=11%  Similarity=0.068  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc------
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN----------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLD------   78 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~------   78 (281)
                      ++...+|..+-+.+||++|+-+..+|.++..+          .....+.++.++.++|..-.|.+.+++|.++.      
T Consensus       163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr  242 (518)
T KOG1941|consen  163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR  242 (518)
T ss_pred             ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence            45667788888888899988888888877433          23567778889999999999999999998875      


Q ss_pred             CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Q 023501           79 HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQS-----LKE  153 (281)
Q Consensus        79 p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~  153 (281)
                      +.......-+|.+|...|+.+.|..-|+.|......          +...+++.......++.....+-.++     +.+
T Consensus       243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~----------~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale  312 (518)
T KOG1941|consen  243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS----------LGDRMGQVEALDGAAKCLETLRLQNKICNCRALE  312 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh----------hhhhHHHHHHHHHHHHHHHHHHHhhcccccchhH
Confidence            445667788899999999999999999999877433          23333333333333333322222222     222


Q ss_pred             HHHHHHHHhhhhhhhh-------hccchh---hhhhHHHHHHHHHHHHHHHhcCcCCCCCCCCcccccCCcccccC-c--
Q 023501          154 ACEAALEEKHVLDISR-------KEGFLD---EASSTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRD-P--  220 (281)
Q Consensus       154 ~~~~~l~~~~~~~~~~-------~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~c~i~~~~~~~-p--  220 (281)
                      ...++++....-..+-       +-....   ...+++.....+..+.-.           ...+.|..|++..-- |  
T Consensus       313 ~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~-----------e~~L~Cg~CGe~~Glk~e~  381 (518)
T KOG1941|consen  313 FNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVE-----------ETELYCGLCGESIGLKNER  381 (518)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH-----------HHhhhhhhhhhhhcCCccc
Confidence            2222222111000000       000000   011122222222111111           235779999876542 2  


Q ss_pred             -eecCCCcccccchHHhHhccCC-CCCCCCCC
Q 023501          221 -VITPSGVTYERAVILDHLDKVG-KFDPITRE  250 (281)
Q Consensus       221 -v~~~~g~~~~~~~i~~~~~~~~-~~cP~~~~  250 (281)
                       ..+||.|.|--.|+.+.+.+++ .+||-||+
T Consensus       382 LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  382 LQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             ccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence             2489999999999999997664 36999983

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.96  E-value=3.8e-10  Score=66.11  Aligned_cols=39  Identities=31%  Similarity=0.593  Sum_probs=35.1

Q ss_pred             ccCCcccccCce-ecCCCcccccchHHhHhc-cCCCCCCCC
Q 023501          210 CKITLDIFRDPV-ITPSGVTYERAVILDHLD-KVGKFDPIT  248 (281)
Q Consensus       210 c~i~~~~~~~pv-~~~~g~~~~~~~i~~~~~-~~~~~cP~~  248 (281)
                      |+||.+.+.+|+ +++|||+||..||.+|+. .....||+|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            799999999999 899999999999999998 444469987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.96  E-value=9.4e-09  Score=88.72  Aligned_cols=113  Identities=16%  Similarity=0.044  Sum_probs=103.2

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501            4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK   83 (281)
Q Consensus         4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (281)
                      +.+...+.-++.++.+.|+..|..|++++|...|..|+..+..-..+++|.|..+..+|+.++|++.+-+.-.+--++.+
T Consensus       480 d~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~e  559 (840)
T KOG2003|consen  480 DIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAE  559 (840)
T ss_pred             HHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHH
Confidence            34555666788899999999999999999999999999999999999999999999999999999999988777778999


Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCC
Q 023501           84 GHYLLGQTLLQRNEYADGIKELEKALNLGRGAK  116 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~  116 (281)
                      .++.++.+|..+.+..+|++++-++..+.|..+
T Consensus       560 vl~qianiye~led~aqaie~~~q~~slip~dp  592 (840)
T KOG2003|consen  560 VLVQIANIYELLEDPAQAIELLMQANSLIPNDP  592 (840)
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCH
Confidence            999999999999999999999999999988733

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.95  E-value=2.5e-08  Score=80.47  Aligned_cols=110  Identities=12%  Similarity=0.162  Sum_probs=101.0

Q ss_pred             hhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHH
Q 023501            7 LAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHY   86 (281)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~   86 (281)
                      ...+|+...+ ...+..++..|+-+.+..+.+++....|.+..+....|..++..|+|..|+..++++..++|+++++|.
T Consensus        60 ~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~  138 (257)
T COG5010          60 VLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWN  138 (257)
T ss_pred             HhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhh
Confidence            3445666677 888999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           87 LLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        87 ~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      .+|.+|.+.|++++|...|.+++++.|..+.
T Consensus       139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~  169 (257)
T COG5010         139 LLGAALDQLGRFDEARRAYRQALELAPNEPS  169 (257)
T ss_pred             HHHHHHHHccChhHHHHHHHHHHHhccCCch
Confidence            9999999999999999999999999887444

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.95  E-value=1.3e-07  Score=78.57  Aligned_cols=116  Identities=20%  Similarity=0.293  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV-----PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHY   86 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~   86 (281)
                      ....++..+-.+|-+.++|++||+.-++...+.+..     +.+|+.+|..+....+.+.|...+.+|++.+|+...+-.
T Consensus       139 fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi  218 (389)
T COG2956         139 FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASI  218 (389)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhh
Confidence            344566677788888888899998888888887763     678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHH
Q 023501           87 LLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAK  133 (281)
Q Consensus        87 ~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~  133 (281)
                      .+|.+....|+|..|++.++.+++.+|+      +..++...+..+-
T Consensus       219 ~lG~v~~~~g~y~~AV~~~e~v~eQn~~------yl~evl~~L~~~Y  259 (389)
T COG2956         219 ILGRVELAKGDYQKAVEALERVLEQNPE------YLSEVLEMLYECY  259 (389)
T ss_pred             hhhHHHHhccchHHHHHHHHHHHHhChH------HHHHHHHHHHHHH
Confidence            9999999999999999999999999876      4555655555543

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.95  E-value=5e-10  Score=90.38  Aligned_cols=48  Identities=15%  Similarity=0.199  Sum_probs=40.8

Q ss_pred             CCcccccCCcccccCc--------eecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501          205 PDYLCCKITLDIFRDP--------VITPSGVTYERAVILDHLDKVGKFDPITREPLR  253 (281)
Q Consensus       205 p~~~~c~i~~~~~~~p--------v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~  253 (281)
                      ..+..||||.+.+.+|        ++++|||+||+.||.+|+...+ +||+||.++.
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~-tCPlCR~~~~  227 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN-TCPVCRTPFI  227 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC-CCCCCCCEee
Confidence            3467899999987763        5688999999999999998766 5999999876

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.92  E-value=2e-08  Score=87.68  Aligned_cols=70  Identities=30%  Similarity=0.316  Sum_probs=65.2

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHH---HHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIY---WTNRALCHLKRNDWTKVEADCRKAIQLD   78 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~l~   78 (281)
                      ..|+.+..+.++|..++..|+|++|+..|++|++++|+++.+   |+|+|.||..+|++++|+.++++|+++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            467889999999999999999999999999999999999854   9999999999999999999999999983

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.91  E-value=6.6e-09  Score=90.60  Aligned_cols=69  Identities=16%  Similarity=0.049  Sum_probs=66.2

Q ss_pred             hCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH---HHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           43 LCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG---HYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        43 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a---~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      .+|+++..++|+|.+|+++|+|++|+..|++|++++|++..+   |+++|.+|..+|++++|+.++++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            478899999999999999999999999999999999999865   999999999999999999999999998

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.91  E-value=2.8e-07  Score=74.08  Aligned_cols=107  Identities=10%  Similarity=0.059  Sum_probs=78.4

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL   88 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (281)
                      .-|+..++.+..|..+-..|.|++|+++|+..++-+|+|..++-..-.+...+|+--+|++-+..-++.-+.+.++|..+
T Consensus        81 ~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eL  160 (289)
T KOG3060|consen   81 RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHEL  160 (289)
T ss_pred             hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            34566667777777777888888888888888888888777776666666667776777777777777777777777777


Q ss_pred             HHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           89 GQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        89 a~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      +++|...|+|++|.-++++.+-+.|.+
T Consensus       161 aeiY~~~~~f~kA~fClEE~ll~~P~n  187 (289)
T KOG3060|consen  161 AEIYLSEGDFEKAAFCLEELLLIQPFN  187 (289)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHcCCCc
Confidence            777777777777777777777776653

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.91  E-value=8.9e-08  Score=76.92  Aligned_cols=112  Identities=16%  Similarity=0.067  Sum_probs=102.5

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      ++..+..+|.+.-.++..--..-..|+-.+||+....-++..+.|+++|..++.+|+..|+|++|.-.+++.+-+.|.++
T Consensus       109 y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~  188 (289)
T KOG3060|consen  109 YESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP  188 (289)
T ss_pred             HHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH
Confidence            45556667888888888888888899999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhc---ChHHHHHHHHHHHhhccC
Q 023501           83 KGHYLLGQTLLQRN---EYADGIKELEKALNLGRG  114 (281)
Q Consensus        83 ~a~~~la~~~~~~g---~~~~A~~~~~kal~~~p~  114 (281)
                      -.+.++|++++.+|   ++.-|.++|.++++++|.
T Consensus       189 l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~  223 (289)
T KOG3060|consen  189 LYFQRLAEVLYTQGGAENLELARKYYERALKLNPK  223 (289)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence            99999999999988   577899999999999774

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.89  E-value=2.1e-08  Score=91.29  Aligned_cols=114  Identities=18%  Similarity=0.133  Sum_probs=98.4

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhcCHHHHHHHH
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKD--------RYGAAIDAYTEAITL--CPNVPIYWTNRALCHLKRNDWTKVEADC   71 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~--------~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~   71 (281)
                      ++++++..+|+.+.++..++..+....        +...|.....+++.+  +|.++.+|.-+|..+...|++++|...+
T Consensus       364 lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l  443 (517)
T PRK10153        364 LLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAI  443 (517)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence            578899999999999998888775542        234566666676664  7778899999999999999999999999


Q ss_pred             HHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCC
Q 023501           72 RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK  116 (281)
Q Consensus        72 ~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~  116 (281)
                      ++|+.++| +..+|..+|.++...|++++|+..|.+|+.++|..+
T Consensus       444 ~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        444 NKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             HHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            99999999 578999999999999999999999999999998744

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.89  E-value=8.8e-10  Score=67.49  Aligned_cols=46  Identities=26%  Similarity=0.366  Sum_probs=40.0

Q ss_pred             cccccCCcccccCceecCCCcc-cccchHHhHhccCCCCCCCCCCCcC
Q 023501          207 YLCCKITLDIFRDPVITPSGVT-YERAVILDHLDKVGKFDPITREPLR  253 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~~~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~~  253 (281)
                      +..|+||.+...+++++||||. ||..|+.+|+.... .||+||++++
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKK-KCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTS-BBTTTTBB-S
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCC-CCCcCChhhc
Confidence            4679999999999999999999 99999999998655 5999999876

...

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.89  E-value=2.6e-08  Score=78.23  Aligned_cols=106  Identities=15%  Similarity=0.164  Sum_probs=102.0

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL   88 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (281)
                      .+.+.|..++++|..|=..|-+.-|..-|++++.+.|+.+.+++.+|.-+...|+|+.|.+.++..+++||.+--++.++
T Consensus        60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR  139 (297)
T COG4785          60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  139 (297)
T ss_pred             ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           89 GQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        89 a~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      |.+++--|++.-|.+.+.+-...+|+
T Consensus       140 gi~~YY~gR~~LAq~d~~~fYQ~D~~  165 (297)
T COG4785         140 GIALYYGGRYKLAQDDLLAFYQDDPN  165 (297)
T ss_pred             ceeeeecCchHhhHHHHHHHHhcCCC
Confidence            99999999999999999999999876

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.89  E-value=5.4e-10  Score=65.21  Aligned_cols=36  Identities=22%  Similarity=0.434  Sum_probs=22.9

Q ss_pred             ccCCcccccC----ceecCCCcccccchHHhHhccC---CCCCC
Q 023501          210 CKITLDIFRD----PVITPSGVTYERAVILDHLDKV---GKFDP  246 (281)
Q Consensus       210 c~i~~~~~~~----pv~~~~g~~~~~~~i~~~~~~~---~~~cP  246 (281)
                      ||||.+ |.+    |++++|||+||++||.+++..+   ...||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 888    9999999999999999999854   22476

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=2.5e-08  Score=93.80  Aligned_cols=72  Identities=35%  Similarity=0.582  Sum_probs=67.2

Q ss_pred             CCCCCcccccCCcccccCceecC-CCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHc
Q 023501          202 AEVPDYLCCKITLDIFRDPVITP-SGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKH  274 (281)
Q Consensus       202 ~~~p~~~~c~i~~~~~~~pv~~~-~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~  274 (281)
                      .++|++|..|++..+|.|||++| +|++.||+-|.+|+.+.. ++|.||.+|+.+.+.||..|+..|+.|..++
T Consensus       865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~-tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek  937 (943)
T KOG2042|consen  865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDC-TDPFNREPLTEDMVSPNEELKAKIRCWIKEK  937 (943)
T ss_pred             ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcCC-CCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence            34799999999999999999998 999999999999999777 5999999999999999999999999998765

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=8.5e-08  Score=84.81  Aligned_cols=185  Identities=15%  Similarity=0.091  Sum_probs=103.6

Q ss_pred             hchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHH
Q 023501            8 AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYL   87 (281)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (281)
                      +..|+.+-.|+..|.-|+..|++.+|.++|.++..++|..+.+|...|+.+.-.|.-++|+..+..|-++-|......+.
T Consensus       306 ~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY  385 (611)
T KOG1173|consen  306 DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY  385 (611)
T ss_pred             HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH
Confidence            34566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhcChHHHHHHHHHHHhhccCCCCCcc-------hHHHHHHHHHHHHH------------------HHHHHHHH
Q 023501           88 LGQTLLQRNEYADGIKELEKALNLGRGAKPKGY-------IVEDIWQELARAKY------------------LLWEQESS  142 (281)
Q Consensus        88 la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~-------~~~~~~~~l~~~~~------------------~~~~~~~~  142 (281)
                      +|.=|..+++++-|.+.|.+|+.++|..+-..-       ............+.                  ....+-..
T Consensus       386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~  465 (611)
T KOG1173|consen  386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY  465 (611)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence            666666666666666666666666655222100       01111111111111                  12233344


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhh-hccchhhhhhHHHHHHHHHHHHH
Q 023501          143 KRSWELQSLKEACEAALEEKHVLDISR-KEGFLDEASSTHLKQMEALRQVF  192 (281)
Q Consensus       143 ~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~  192 (281)
                      .+.+++.++....+++|...+..-... ..|.+.-..+..+.++..+.+.+
T Consensus       466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL  516 (611)
T KOG1173|consen  466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL  516 (611)
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            556778888888888887654322221 12333445555555555555444

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=98.88  E-value=6e-10  Score=69.45  Aligned_cols=44  Identities=39%  Similarity=0.599  Sum_probs=31.1

Q ss_pred             CcccccCCcccccCcee-cCCCcccccchHHhHhccCC-CCCCCCC
Q 023501          206 DYLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVG-KFDPITR  249 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~-~~cP~~~  249 (281)
                      ..+.|||+...|.+||. +.|||+|++++|.+++..++ ..||+.|
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G   55 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG   55 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence            35789999999999998 47999999999999994433 3599965

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.88  E-value=5.5e-08  Score=79.42  Aligned_cols=103  Identities=16%  Similarity=0.151  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGHYL   87 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~   87 (281)
                      +..+++.|..+++.|+|.+|...|..-+...|++   +.+++++|.+++.+|+|++|...|..+++--|.+   +++++.
T Consensus       141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            4558999999999999999999999999999985   6899999999999999999999999999988765   578999


Q ss_pred             HHHHHHHhcChHHHHHHHHHHHhhccCCC
Q 023501           88 LGQTLLQRNEYADGIKELEKALNLGRGAK  116 (281)
Q Consensus        88 la~~~~~~g~~~~A~~~~~kal~~~p~~~  116 (281)
                      +|.++..+|+.++|...|.++++..|+..
T Consensus       221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         221 LGVSLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            99999999999999999999999988843

>PRK11906 transcriptional regulator; Provisional

Probab=98.88  E-value=3.4e-08  Score=86.35  Aligned_cols=113  Identities=10%  Similarity=-0.063  Sum_probs=102.3

Q ss_pred             hhhhhh---hchHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHH
Q 023501            2 VLEAGL---AGVAKQAEQLRLDGNYYFSK---------DRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEA   69 (281)
Q Consensus         2 ~l~~~~---~~~~~~a~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~   69 (281)
                      ++.+++   ..+|+.+..+-.++..++..         .+-.+|.....+|++++|.|+.++..+|.++...++++.|..
T Consensus       280 lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~  359 (458)
T PRK11906        280 IFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHI  359 (458)
T ss_pred             HHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHH
Confidence            456677   67788888888888887655         234679999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           70 DCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        70 ~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .+++|+.++|+++.+++..|.+....|+.++|...++++++++|.
T Consensus       360 ~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~  404 (458)
T PRK11906        360 LFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR  404 (458)
T ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence            999999999999999999999999999999999999999999876

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.87  E-value=3.2e-08  Score=86.44  Aligned_cols=105  Identities=13%  Similarity=0.008  Sum_probs=91.9

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch----hH
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV----KG   84 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~----~a   84 (281)
                      ..+.....+..+|..+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...|..+    ..
T Consensus       109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~  188 (355)
T cd05804         109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN  188 (355)
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence            34555667778899999999999999999999999999999999999999999999999999999999887432    35


Q ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501           85 HYLLGQTLLQRNEYADGIKELEKALNLGR  113 (281)
Q Consensus        85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p  113 (281)
                      +..+|.++...|++++|+..|++++...|
T Consensus       189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         189 WWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            66899999999999999999999976654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.87  E-value=6.4e-09  Score=69.18  Aligned_cols=60  Identities=23%  Similarity=0.370  Sum_probs=57.8

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           55 ALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        55 a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ..+|...++|++|+..+++++.++|+++.+++.+|.++..+|++.+|+..++++++.+|+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~   61 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD   61 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            567899999999999999999999999999999999999999999999999999999886

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.86  E-value=5.2e-08  Score=75.98  Aligned_cols=95  Identities=12%  Similarity=0.129  Sum_probs=80.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHHHHHHHHHHHhc
Q 023501           22 NYYFSKDRYGAAIDAYTEAITLCPNV--PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGHYLLGQTLLQRN   96 (281)
Q Consensus        22 ~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~la~~~~~~g   96 (281)
                      +.+|-.+.|..+...+...+..++.+  +.++.++|.++...|++++|+..+++++.+.|+.   +.+++.+|.++...|
T Consensus         7 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g   86 (168)
T CHL00033          7 NDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG   86 (168)
T ss_pred             cccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC
Confidence            34555666888888886666666655  6788999999999999999999999999997763   458999999999999


Q ss_pred             ChHHHHHHHHHHHhhccCCC
Q 023501           97 EYADGIKELEKALNLGRGAK  116 (281)
Q Consensus        97 ~~~~A~~~~~kal~~~p~~~  116 (281)
                      ++++|+..+++++.+.|...
T Consensus        87 ~~~eA~~~~~~Al~~~~~~~  106 (168)
T CHL00033         87 EHTKALEYYFQALERNPFLP  106 (168)
T ss_pred             CHHHHHHHHHHHHHhCcCcH
Confidence            99999999999999977643

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.85  E-value=1.3e-07  Score=85.85  Aligned_cols=102  Identities=13%  Similarity=0.155  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL   92 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~   92 (281)
                      ++.+....|.-.+..++|++|.++++.+++++|-....|+++|.|..++++++.|.++|.+++.++|++..+|.+++.+|
T Consensus       484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay  563 (777)
T KOG1128|consen  484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY  563 (777)
T ss_pred             hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence            45556666777788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcChHHHHHHHHHHHhhccC
Q 023501           93 LQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        93 ~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +.+|+-.+|...+.+|++.+-+
T Consensus       564 i~~~~k~ra~~~l~EAlKcn~~  585 (777)
T KOG1128|consen  564 IRLKKKKRAFRKLKEALKCNYQ  585 (777)
T ss_pred             HHHhhhHHHHHHHHHHhhcCCC
Confidence            9999999999999999998644

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=5.3e-08  Score=83.23  Aligned_cols=100  Identities=17%  Similarity=0.147  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL   93 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~   93 (281)
                      ...+.+++..+.+.++|.+|+...+++|.++|+|..+++.+|.++..+|+|+.|+.++++|++++|.|-.+...+..+..
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999988888888


Q ss_pred             HhcChHHH-HHHHHHHHhhcc
Q 023501           94 QRNEYADG-IKELEKALNLGR  113 (281)
Q Consensus        94 ~~g~~~~A-~~~~~kal~~~p  113 (281)
                      ...++.+. .+.|.+.+...+
T Consensus       337 k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  337 KIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHHhhccc
Confidence            87776655 677888887644

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.84  E-value=1.3e-08  Score=68.63  Aligned_cols=67  Identities=19%  Similarity=0.292  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC----CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL---CP----NVPIYWTNRALCHLKRNDWTKVEADCRKAIQL   77 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   77 (281)
                      |..+..+..+|..++..|+|++|+.+|++++.+   .+    .-+.++.++|.++..+|++++|+..+++|+++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            344555566666666666666666666665544   11    11344555555555555555555555555443

...

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.83  E-value=1.1e-07  Score=90.94  Aligned_cols=112  Identities=12%  Similarity=-0.068  Sum_probs=94.5

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      |.+++...|..+.....+...+...|++++|+.++++++.-.|........+|.++..+|+|++|+..++++++.+|+++
T Consensus        57 L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~  136 (822)
T PRK14574         57 LQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP  136 (822)
T ss_pred             HHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence            55666667776534348888888899999999999999943444455555558899999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .+++.++.++...++.++|+..+.++...+|.
T Consensus       137 ~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~  168 (822)
T PRK14574        137 DLISGMIMTQADAGRGGVVLKQATELAERDPT  168 (822)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence            99999999999999999999999999999776

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.82  E-value=5.4e-08  Score=85.13  Aligned_cols=95  Identities=18%  Similarity=0.222  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL   93 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~   93 (281)
                      +++...++..++..++..+|+..+.+++...|.++.++...|..++..++++.|+..+++|+.+.|...+.|+.||.+|.
T Consensus       200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi  279 (395)
T PF09295_consen  200 PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYI  279 (395)
T ss_pred             CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            45666789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcChHHHHHHHHHH
Q 023501           94 QRNEYADGIKELEKA  108 (281)
Q Consensus        94 ~~g~~~~A~~~~~ka  108 (281)
                      .+|++++|+..++.+
T Consensus       280 ~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  280 QLGDFENALLALNSC  294 (395)
T ss_pred             hcCCHHHHHHHHhcC
Confidence            999999999776633

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.82  E-value=1.7e-07  Score=84.29  Aligned_cols=149  Identities=23%  Similarity=0.259  Sum_probs=116.9

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc---
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD---   78 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---   78 (281)
                      .+.-+..++.+|..|...++|.+|+..|.+|+.+        .|.-+.++.|+|.+|.+.|+|++|..+|++|+++-   
T Consensus       237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~  316 (508)
T KOG1840|consen  237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL  316 (508)
T ss_pred             CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence            4556677778999999999999999999999977        44567899999999999999999999999999874   


Q ss_pred             -----CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           79 -----HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG-AKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLK  152 (281)
Q Consensus        79 -----p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  152 (281)
                           |.-...+..++.++..++++++|+.++.+++++.-+ ++..++....+...++..         ....++++++.
T Consensus       317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l---------~~~~gk~~ea~  387 (508)
T KOG1840|consen  317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAEL---------YLKMGKYKEAE  387 (508)
T ss_pred             hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH---------HHHhcchhHHH
Confidence                 334667888999999999999999999999988542 223333444454444443         44567888888


Q ss_pred             HHHHHHHHHhhhhhh
Q 023501          153 EACEAALEEKHVLDI  167 (281)
Q Consensus       153 ~~~~~~l~~~~~~~~  167 (281)
                      +.+.+++...+....
T Consensus       388 ~~~k~ai~~~~~~~~  402 (508)
T KOG1840|consen  388 ELYKKAIQILRELLG  402 (508)
T ss_pred             HHHHHHHHHHHhccc
Confidence            888888876554443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.81  E-value=5.6e-08  Score=90.67  Aligned_cols=115  Identities=14%  Similarity=0.138  Sum_probs=104.7

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--Ccc
Q 023501            4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD--HDS   81 (281)
Q Consensus         4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--p~~   81 (281)
                      .+.++.+|.+..+..-+|.++...|++.+|+..|.++.+-..+++.+|.|+|+||+.+|+|-.|++.|+.+++.-  .++
T Consensus       636 ~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~  715 (1018)
T KOG2002|consen  636 GKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR  715 (1018)
T ss_pred             HHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            456677889999999999999999999999999999998888889999999999999999999999999999764  357


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK  118 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~  118 (281)
                      ...+..||.+++..|.+.+|..++.+|+.+.|.+...
T Consensus       716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v  752 (1018)
T KOG2002|consen  716 SEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSV  752 (1018)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchH
Confidence            8899999999999999999999999999998885553

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.80  E-value=2.4e-07  Score=71.01  Aligned_cols=85  Identities=13%  Similarity=0.113  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC----------HHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcC--
Q 023501           30 YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRND----------WTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNE--   97 (281)
Q Consensus        30 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~--   97 (281)
                      |+.|.+.+...+..+|.|+..+++=|.+++.+.+          +++|+.=+++||.++|+...+++.+|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            7889999999999999999999999999888754          5778889999999999999999999999999874  


Q ss_pred             ---------hHHHHHHHHHHHhhccC
Q 023501           98 ---------YADGIKELEKALNLGRG  114 (281)
Q Consensus        98 ---------~~~A~~~~~kal~~~p~  114 (281)
                               |++|..+|++|...+|+
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~  112 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPN  112 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCC
Confidence                     78999999999999887

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.79  E-value=9.9e-08  Score=83.37  Aligned_cols=102  Identities=13%  Similarity=0.152  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH-------------------------------------HHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPI-------------------------------------YWTNRA   55 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-------------------------------------~~~~~a   55 (281)
                      ..+.....|..++..|++++|+..+.++++.+|++..                                     .+..+|
T Consensus        42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a  121 (355)
T cd05804          42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA  121 (355)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence            4455666778888888888888888887777776543                                     334566


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           56 LCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        56 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .++...|++++|+..++++++++|+++.++..+|.++...|++++|+..+.+++...|.
T Consensus       122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence            78888899999999999999999999999999999999999999999999999988765

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.78  E-value=2.3e-07  Score=67.43  Aligned_cols=104  Identities=17%  Similarity=0.184  Sum_probs=80.9

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHH
Q 023501           48 PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVED  124 (281)
Q Consensus        48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~  124 (281)
                      +..++.+|..+...|++++|+..+.+++...|++   ..+++.+|.++...|++++|+..|++++...|++...    ..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~----~~   77 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA----PD   77 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc----cH
Confidence            4678899999999999999999999999999876   5799999999999999999999999999998874332    11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501          125 IWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus       125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      +...+.         ......++..++...+..+++..|.
T Consensus        78 ~~~~~~---------~~~~~~~~~~~A~~~~~~~~~~~p~  108 (119)
T TIGR02795        78 ALLKLG---------MSLQELGDKEKAKATLQQVIKRYPG  108 (119)
T ss_pred             HHHHHH---------HHHHHhCChHHHHHHHHHHHHHCcC
Confidence            222222         1223456667777778888776543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.77  E-value=9.2e-09  Score=85.51  Aligned_cols=63  Identities=19%  Similarity=0.269  Sum_probs=46.5

Q ss_pred             CcccccCCccc-ccCce----ecCCCcccccchHHhHhccCCCCCCCCCCCcCCCC----CcccHHHHHHHH
Q 023501          206 DYLCCKITLDI-FRDPV----ITPSGVTYERAVILDHLDKVGKFDPITREPLRESQ----LVPNLAIKEAVR  268 (281)
Q Consensus       206 ~~~~c~i~~~~-~~~pv----~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~----~~~n~~l~~~i~  268 (281)
                      ++..||+|..- ...|-    +.+|||+||++||...|..++..||.|+.++....    +.++..+.+.|+
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~   73 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVD   73 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHH
Confidence            34679999862 33442    35899999999999998776657999999988665    666666655443

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.77  E-value=2.4e-07  Score=63.45  Aligned_cols=65  Identities=25%  Similarity=0.334  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           50 YWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ++.++|.++...|++++|+..++++++..|.+..+++.+|.++...|++++|+..+.+++...|.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   66 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD   66 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            57889999999999999999999999999999999999999999999999999999999999766

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.77  E-value=1.7e-08  Score=68.01  Aligned_cols=67  Identities=18%  Similarity=0.309  Sum_probs=58.7

Q ss_pred             CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-------CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           45 PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-------HDSVKGHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      |+-+.++.++|.+|..+|+|++|+..+++|+++.       |..+.+++.+|.++..+|++++|++.+++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3446789999999999999999999999999763       234778999999999999999999999999987

...

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.76  E-value=2.2e-09  Score=63.82  Aligned_cols=40  Identities=30%  Similarity=0.527  Sum_probs=33.6

Q ss_pred             cccCCccccc---CceecCCCcccccchHHhHhccCCCCCCCCC
Q 023501          209 CCKITLDIFR---DPVITPSGVTYERAVILDHLDKVGKFDPITR  249 (281)
Q Consensus       209 ~c~i~~~~~~---~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~  249 (281)
                      .|+||.+-+.   .++.++|||.|+.+||.+|+..+. .||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~-~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNN-SCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSS-B-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCC-cCCccC
Confidence            4899998885   366789999999999999999876 599996

...

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.76  E-value=9.2e-07  Score=78.63  Aligned_cols=98  Identities=14%  Similarity=0.092  Sum_probs=83.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHH-HHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHh
Q 023501           17 LRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYW-TNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQR   95 (281)
Q Consensus        17 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~   95 (281)
                      +...+....+.|+++.|..+|.++.+.+|++.... ...+..+...|++++|+..++++++.+|+++.++..++.+|...
T Consensus       121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~  200 (398)
T PRK10747        121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT  200 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            33445666999999999999999999999875443 34488999999999999999999999999999999999999999


Q ss_pred             cChHHHHHHHHHHHhhccC
Q 023501           96 NEYADGIKELEKALNLGRG  114 (281)
Q Consensus        96 g~~~~A~~~~~kal~~~p~  114 (281)
                      |+|++|+..+.+..+..+.
T Consensus       201 gdw~~a~~~l~~l~k~~~~  219 (398)
T PRK10747        201 GAWSSLLDILPSMAKAHVG  219 (398)
T ss_pred             HhHHHHHHHHHHHHHcCCC
Confidence            9999999888888877443

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.76  E-value=1.4e-08  Score=82.46  Aligned_cols=66  Identities=24%  Similarity=0.295  Sum_probs=57.6

Q ss_pred             ccccCCcccccCceecC-CCcccccchHHhHhccCCCCCCCCCC-CcCCCCCcccHHHHHHHHHHHHH
Q 023501          208 LCCKITLDIFRDPVITP-SGVTYERAVILDHLDKVGKFDPITRE-PLRESQLVPNLAIKEAVRAYMDK  273 (281)
Q Consensus       208 ~~c~i~~~~~~~pv~~~-~g~~~~~~~i~~~~~~~~~~cP~~~~-~~~~~~~~~n~~l~~~i~~~~~~  273 (281)
                      +.||+|+.++++|+-|| |||+||..||+..|......||.|.. .+..+.|.|+...+..|+.+++.
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk  342 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK  342 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence            88999999999999885 88999999999987766657999954 46667899999999999999875

>PRK11906 transcriptional regulator; Provisional

Probab=98.75  E-value=2.8e-07  Score=80.74  Aligned_cols=137  Identities=9%  Similarity=-0.063  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHhcCC---HHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHh---------cCHHHHHHHHHHHHhhcCc
Q 023501           16 QLRLDGNYYFSKDR---YGAAIDAYTEAI---TLCPNVPIYWTNRALCHLKR---------NDWTKVEADCRKAIQLDHD   80 (281)
Q Consensus        16 ~~~~~g~~~~~~~~---~~~A~~~~~~al---~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~l~p~   80 (281)
                      -++.+|...+..+.   .+.|+.+|++|+   .++|..+.+|..+|.||+..         .+-.+|....++|++++|.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            44667777765554   367999999999   99999999999999999866         1357789999999999999


Q ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALE  160 (281)
Q Consensus        81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  160 (281)
                      ++.++..+|.++...|+++.|+..|++|+.++|+....       ....+.         ...-.++..++...++++++
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~-------~~~~~~---------~~~~~G~~~~a~~~i~~alr  400 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL-------YYYRAL---------VHFHNEKIEEARICIDKSLQ  400 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH-------HHHHHH---------HHHHcCCHHHHHHHHHHHhc
Confidence            99999999999999999999999999999998884332       211111         12223556667777888888


Q ss_pred             Hhhhhhhh
Q 023501          161 EKHVLDIS  168 (281)
Q Consensus       161 ~~~~~~~~  168 (281)
                      ..|.+...
T Consensus       401 LsP~~~~~  408 (458)
T PRK11906        401 LEPRRRKA  408 (458)
T ss_pred             cCchhhHH
Confidence            77766554

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=5.6e-09  Score=90.23  Aligned_cols=70  Identities=26%  Similarity=0.403  Sum_probs=60.1

Q ss_pred             CCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHcCCC
Q 023501          205 PDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWA  277 (281)
Q Consensus       205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~~~~  277 (281)
                      ...+.||||.+.|.+|++++|||+||+.||..++. ....||.|+. ... .+.+|..+..+++.+...+.+.
T Consensus        11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~~~   80 (386)
T KOG2177|consen   11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLRLSR   80 (386)
T ss_pred             cccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcCCcc
Confidence            46788999999999999999999999999999998 4446999996 333 8889999999999997766543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.75  E-value=1e-07  Score=74.64  Aligned_cols=71  Identities=13%  Similarity=0.223  Sum_probs=64.4

Q ss_pred             CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           45 PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      +..+.+++++|..+...|++++|+..+++++++.|+.   ..+++.+|.++..+|++++|+..+.+++...|..
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  105 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ  105 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            3567889999999999999999999999999987753   5799999999999999999999999999997763

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.74  E-value=4.7e-07  Score=82.57  Aligned_cols=135  Identities=13%  Similarity=0.125  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhh--cC
Q 023501           13 QAEQLRLDGNYYFSKDR---YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN--------DWTKVEADCRKAIQL--DH   79 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~al~l--~p   79 (281)
                      .|-.++.+|..++..++   +..|+.+|++|++++|+++.+|..++.+|....        ++..+...+.+++.+  +|
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            45667788988887665   789999999999999999999999999886653        345666667776664  78


Q ss_pred             cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           80 DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAAL  159 (281)
Q Consensus        80 ~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (281)
                      ..+.+|..+|..+...|++++|...+++|+.++|+ ..                .....++.....|+.+++...+.+++
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~----------------a~~~lG~~~~~~G~~~eA~~~~~~A~  480 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WL----------------NYVLLGKVYELKGDNRLAADAYSTAF  480 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HH----------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            88899999999999999999999999999999764 11                23333444455677778888888888


Q ss_pred             HHhhh
Q 023501          160 EEKHV  164 (281)
Q Consensus       160 ~~~~~  164 (281)
                      ..+|.
T Consensus       481 ~L~P~  485 (517)
T PRK10153        481 NLRPG  485 (517)
T ss_pred             hcCCC
Confidence            76654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=1.8e-07  Score=79.97  Aligned_cols=111  Identities=21%  Similarity=0.216  Sum_probs=67.1

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501            4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK   83 (281)
Q Consensus         4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (281)
                      +++++.++.....+...|+.+...|+.++|+-.|+.|+.+.|.+-.+|.++-.+|+..|.+.+|....+.+++.-|.+++
T Consensus       324 eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~  403 (564)
T KOG1174|consen  324 EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR  403 (564)
T ss_pred             HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh
Confidence            45555566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHH-HHHHHh-cChHHHHHHHHHHHhhccC
Q 023501           84 GHYLLG-QTLLQR-NEYADGIKELEKALNLGRG  114 (281)
Q Consensus        84 a~~~la-~~~~~~-g~~~~A~~~~~kal~~~p~  114 (281)
                      ++..+| .++... .--++|...+++++.+.|+
T Consensus       404 ~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~  436 (564)
T KOG1174|consen  404 SLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI  436 (564)
T ss_pred             hhhhhcceeeccCchhHHHHHHHHHhhhccCCc
Confidence            655554 333222 1235556666666666554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.74  E-value=1e-06  Score=79.42  Aligned_cols=106  Identities=14%  Similarity=0.098  Sum_probs=94.3

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD--   78 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--   78 (281)
                      ..|....+...+|..|..+|+|+.|+..+..|++.        .|.-.....++|..|..+++|.+|+..|++|+.+-  
T Consensus       194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~  273 (508)
T KOG1840|consen  194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE  273 (508)
T ss_pred             CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            46777788888999999999999999999999998        56666777789999999999999999999999864  


Q ss_pred             ------CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           79 ------HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        79 ------p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                            |.-+.++.+||.+|...|++++|..++++|+.+...
T Consensus       274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~  315 (508)
T KOG1840|consen  274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK  315 (508)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence                  445679999999999999999999999999999543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=2.8e-07  Score=78.91  Aligned_cols=106  Identities=13%  Similarity=0.155  Sum_probs=91.1

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch----------------------------------HHHHHH
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP----------------------------------IYWTNR   54 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------------------~~~~~~   54 (281)
                      .-+.+...+..+|..++..|++.+|+..|.++.-++|.+.                                  .-|+--
T Consensus       227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~  306 (564)
T KOG1174|consen  227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH  306 (564)
T ss_pred             cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence            4567888999999999999999999999999999998842                                  223333


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           55 ALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        55 a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +...+..++|..|+.+.+++|..+|.+..++...|.++.++|+.++|+-.|+.|..+.|.
T Consensus       307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~  366 (564)
T KOG1174|consen  307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY  366 (564)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence            344455667889999999999999999999999999999999999999999999999776

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.73  E-value=3.5e-07  Score=87.00  Aligned_cols=155  Identities=11%  Similarity=-0.025  Sum_probs=114.1

Q ss_pred             hchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch-----
Q 023501            8 AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV-----   82 (281)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-----   82 (281)
                      .-+|.+..++..+...+...+++++|+..+..+++.+|+...+|+.+|..+++.+++.+|...  .++.+-+.+.     
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v  102 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV  102 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence            357888999999999999999999999999999999999999999999999999988877666  6666666555     


Q ss_pred             --------------hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHH--HHHHHHHHHHH-HHHHHHH
Q 023501           83 --------------KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQ--ELARAKYLLWE-QESSKRS  145 (281)
Q Consensus        83 --------------~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~--~l~~~~~~~~~-~~~~~~~  145 (281)
                                    .|++.+|.+|-.+|++++|...|+++++++|++..........+.  .+.++...... .......
T Consensus       103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~  182 (906)
T PRK14720        103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKK  182 (906)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence                          899999999999999999999999999998875554222222222  22222222221 1222234


Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 023501          146 WELQSLKEACEAALEEKHV  164 (281)
Q Consensus       146 ~~~~~~~~~~~~~l~~~~~  164 (281)
                      +++.++...-.+.+...++
T Consensus       183 kq~~~~~e~W~k~~~~~~~  201 (906)
T PRK14720        183 KQYVGIEEIWSKLVHYNSD  201 (906)
T ss_pred             hcchHHHHHHHHHHhcCcc
Confidence            5666666666665554443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.72  E-value=5.3e-06  Score=63.94  Aligned_cols=100  Identities=19%  Similarity=0.258  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc--chhHHHHHHHHH
Q 023501           16 QLRLDGNYYFSKDRYGAAIDAYTEAITL-CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD--SVKGHYLLGQTL   92 (281)
Q Consensus        16 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~la~~~   92 (281)
                      ....+|+.+...|++.+|..+|++++.- ..+++.....++++.+..+++..|...+++..+.+|.  .+..+..+|.+|
T Consensus        91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l  170 (251)
T COG4700          91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL  170 (251)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence            4567899999999999999999999864 5679999999999999999999999999999999985  588999999999


Q ss_pred             HHhcChHHHHHHHHHHHhhccCC
Q 023501           93 LQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        93 ~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      ..+|++.+|...|+.+++..|++
T Consensus       171 aa~g~~a~Aesafe~a~~~ypg~  193 (251)
T COG4700         171 AAQGKYADAESAFEVAISYYPGP  193 (251)
T ss_pred             HhcCCchhHHHHHHHHHHhCCCH
Confidence            99999999999999999998873

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.72  E-value=5e-07  Score=85.98  Aligned_cols=107  Identities=17%  Similarity=0.086  Sum_probs=95.2

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch-------------------HHHHHHHHHHHHhcC
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP-------------------IYWTNRALCHLKRND   63 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-------------------~~~~~~a~~~~~~~~   63 (281)
                      ++.+....|+....+..+|..+++.+++.+|.-.  .++...+.+.                   .+++.+|.||-++|+
T Consensus        54 ~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~  131 (906)
T PRK14720         54 CEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNE  131 (906)
T ss_pred             HHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCC
Confidence            4556777888889999999999999998877766  6666666665                   899999999999999


Q ss_pred             HHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           64 WTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        64 ~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                      +++|...++++++++|+++.++.++|..|... +.++|++.+.+|+...
T Consensus       132 ~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        132 NKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999 9999999999998773

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.71  E-value=8.8e-08  Score=62.65  Aligned_cols=57  Identities=26%  Similarity=0.372  Sum_probs=53.4

Q ss_pred             HHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           58 HLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        58 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +++.|+|++|+..+++++..+|++..+++.+|.+++..|++++|...+.+++..+|+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~   57 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD   57 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            357899999999999999999999999999999999999999999999999999876

...

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.71  E-value=9.1e-07  Score=73.59  Aligned_cols=138  Identities=15%  Similarity=0.099  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc-----hhHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS-----VKGH   85 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-----~~a~   85 (281)
                      .....++..+|..|+..|-++.|...|...++....-..+...+..+|.+..+|++|++..++..++.+..     +..|
T Consensus       104 ~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy  183 (389)
T COG2956         104 EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY  183 (389)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence            44566677777777777777777777777766555556677777888888888888888888888887754     4566


Q ss_pred             HHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501           86 YLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus        86 ~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      ..+|+.+....+.+.|...+.+|++-+|.....                .+..++-....+++..+.+.++.++++++.
T Consensus       184 CELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA----------------si~lG~v~~~~g~y~~AV~~~e~v~eQn~~  246 (389)
T COG2956         184 CELAQQALASSDVDRARELLKKALQADKKCVRA----------------SIILGRVELAKGDYQKAVEALERVLEQNPE  246 (389)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhhCccceeh----------------hhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence            777888888888888888888888887764332                222333344445555555555555555544

>TIGR00540 hemY_coli hemY protein

Probab=98.69  E-value=1.8e-06  Score=77.14  Aligned_cols=95  Identities=12%  Similarity=0.048  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHh
Q 023501           17 LRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP-IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQR   95 (281)
Q Consensus        17 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~   95 (281)
                      +...|..+.+.|+++.|..+|.++.+..|++. .+...++..+...|+++.|...+++.++..|+++.++..++.++...
T Consensus       121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~  200 (409)
T TIGR00540       121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS  200 (409)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            33444445555555555555555555444443 23333445555555555555555555555555555555555555555


Q ss_pred             cChHHHHHHHHHHHhh
Q 023501           96 NEYADGIKELEKALNL  111 (281)
Q Consensus        96 g~~~~A~~~~~kal~~  111 (281)
                      |+|++|...+.+.++.
T Consensus       201 ~d~~~a~~~l~~l~k~  216 (409)
T TIGR00540       201 GAWQALDDIIDNMAKA  216 (409)
T ss_pred             hhHHHHHHHHHHHHHc
Confidence            5555555555544444

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.66  E-value=3.2e-06  Score=76.85  Aligned_cols=141  Identities=15%  Similarity=0.068  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL   92 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~   92 (281)
                      ....++.++.-+-..|++++|+.+.++||+..|+.+.+|...|.++...|++.+|...++.|-.+|+.+--.-...+..+
T Consensus       193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~  272 (517)
T PF12569_consen  193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL  272 (517)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999888888889999


Q ss_pred             HHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           93 LQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALE  160 (281)
Q Consensus        93 ~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  160 (281)
                      +..|+.++|.+.+..-..-+-++.......+.+|-.+..       ++...|.+.+..+.+.+....+
T Consensus       273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~-------a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETEC-------AEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHH
Confidence            999999999999876544422212221223334443333       3344455666666555555444

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PHA02926 zinc finger-like protein; Provisional

Probab=98.66  E-value=1.3e-08  Score=79.61  Aligned_cols=49  Identities=14%  Similarity=0.149  Sum_probs=39.4

Q ss_pred             CCcccccCCcccccC---------ceecCCCcccccchHHhHhccC-----CCCCCCCCCCcC
Q 023501          205 PDYLCCKITLDIFRD---------PVITPSGVTYERAVILDHLDKV-----GKFDPITREPLR  253 (281)
Q Consensus       205 p~~~~c~i~~~~~~~---------pv~~~~g~~~~~~~i~~~~~~~-----~~~cP~~~~~~~  253 (281)
                      ..+..|+||.+...+         +++.+|+|+||..||.+|-...     ...||+||..+.
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            346789999987643         5778999999999999998743     124999999876

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=8.2e-09  Score=82.67  Aligned_cols=53  Identities=21%  Similarity=0.258  Sum_probs=44.2

Q ss_pred             CCcccccCCcccccCceecCCCcccccchHHh-HhccCCCCCCCCCCCcCCCCC
Q 023501          205 PDYLCCKITLDIFRDPVITPSGVTYERAVILD-HLDKVGKFDPITREPLRESQL  257 (281)
Q Consensus       205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~-~~~~~~~~cP~~~~~~~~~~~  257 (281)
                      ..++.|+||.+.+..|+.++|||.||..||.. |-.....+||+||....+..+
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v  266 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV  266 (271)
T ss_pred             ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence            36899999999999999999999999999999 544444459999987765543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=9.8e-07  Score=73.04  Aligned_cols=118  Identities=15%  Similarity=0.051  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcC---hHHHHHHHH
Q 023501           30 YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNE---YADGIKELE  106 (281)
Q Consensus        30 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~---~~~A~~~~~  106 (281)
                      .+..+.-++.-+..+|+|+.-|..+|.+|+.+|++..|...|.+|+++.|+++..+..+|++++...+   -.++...+.
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            45677778888999999999999999999999999999999999999999999999999999988764   578899999


Q ss_pred             HHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501          107 KALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKH  163 (281)
Q Consensus       107 kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (281)
                      +++.++|.+..                .....+......+++.++....+..+...+
T Consensus       218 ~al~~D~~~ir----------------al~lLA~~afe~g~~~~A~~~Wq~lL~~lp  258 (287)
T COG4235         218 QALALDPANIR----------------ALSLLAFAAFEQGDYAEAAAAWQMLLDLLP  258 (287)
T ss_pred             HHHhcCCccHH----------------HHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence            99999887322                233334455567888889888888887644

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.65  E-value=2.1e-08  Score=59.74  Aligned_cols=44  Identities=34%  Similarity=0.629  Sum_probs=36.7

Q ss_pred             cccCCcccccCceec-CCCcccccchHHhHhccCCCCCCCCCCCc
Q 023501          209 CCKITLDIFRDPVIT-PSGVTYERAVILDHLDKVGKFDPITREPL  252 (281)
Q Consensus       209 ~c~i~~~~~~~pv~~-~~g~~~~~~~i~~~~~~~~~~cP~~~~~~  252 (281)
                      .|+||.+.+.+|+.+ +|||.||..|+..|+..+...||.|+..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            489999999888865 49999999999999987444699998753

>TIGR00540 hemY_coli hemY protein

Probab=98.64  E-value=3e-06  Score=75.71  Aligned_cols=118  Identities=14%  Similarity=0.136  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch-hHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV-KGHYLLG   89 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~~la   89 (281)
                      ...+......|...+..|+|+.|.+...++.+..|+....+...|.++...|+++.|..++.++.+..|++. .+...++
T Consensus        81 ~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a  160 (409)
T TIGR00540        81 RRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART  160 (409)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence            345777788999999999999999999999999999888889899999999999999999999999999885 4666679


Q ss_pred             HHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHH
Q 023501           90 QTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQE  128 (281)
Q Consensus        90 ~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~  128 (281)
                      .++...|+++.|...+++.++..|++.........+...
T Consensus       161 ~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~  199 (409)
T TIGR00540       161 RILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR  199 (409)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999988855443333333333

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=1.3e-08  Score=88.82  Aligned_cols=70  Identities=26%  Similarity=0.317  Sum_probs=54.2

Q ss_pred             CcccccCCcccccCceecCCCcccccchHHhHhccC----CCCCCCCCCCcCCCCCcccH----HHHHHHHHHHHHcC
Q 023501          206 DYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKV----GKFDPITREPLRESQLVPNL----AIKEAVRAYMDKHG  275 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~----~~~cP~~~~~~~~~~~~~n~----~l~~~i~~~~~~~~  275 (281)
                      .+..||||+....-|+.|.|||.||-.||.++|...    ...||+|+..+..++|.|-+    .-+..++..+..||
T Consensus       185 t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng  262 (513)
T KOG2164|consen  185 TDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG  262 (513)
T ss_pred             cCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence            378899999999999999999999999999998754    23599999999887665543    33444555555554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.64  E-value=2e-07  Score=84.70  Aligned_cols=114  Identities=18%  Similarity=0.174  Sum_probs=106.2

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      ++......|-....|+..|..+++.++++.|.+.|+.++.++|++...|+|++.+|.++++-.+|...+.+|++-+-.+.
T Consensus       508 le~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w  587 (777)
T KOG1128|consen  508 LERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW  587 (777)
T ss_pred             HHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC
Confidence            45566677888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCC
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK  116 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~  116 (281)
                      +.|-+...+....|.+++|++.|.+.+.+.....
T Consensus       588 ~iWENymlvsvdvge~eda~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  588 QIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             eeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence            9999999999999999999999999998854433

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=2.2e-08  Score=86.88  Aligned_cols=73  Identities=22%  Similarity=0.391  Sum_probs=59.8

Q ss_pred             CCCCCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCC-----CCcccHHHHHHHHHHHH
Q 023501          199 DTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRES-----QLVPNLAIKEAVRAYMD  272 (281)
Q Consensus       199 ~~~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~-----~~~~n~~l~~~i~~~~~  272 (281)
                      ..+..++.+|.|.+|..++..||+|||||+||..||.+.++.... ||.|+.++...     ...+|..+...|..|+.
T Consensus        76 s~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~-cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~  153 (398)
T KOG4159|consen   76 SGPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETE-CPLCRDELVELPALEQALSLNRLLCKLITKFLE  153 (398)
T ss_pred             ccCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCC-CcccccccccchHHHHHHHHHHHHHHHHHHhhh
Confidence            446666899999999999999999999999999999999987774 99999887631     23346667788887754

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.62  E-value=2.7e-06  Score=64.56  Aligned_cols=96  Identities=19%  Similarity=0.192  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGH   85 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~   85 (281)
                      ..+...+......+..+++..+...++..+...|+.   ..+...+|.+++..|++++|...++.++...|+.   ..+.
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~   88 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR   88 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            456667777777788999999999999999999987   5778889999999999999999999999987654   4688


Q ss_pred             HHHHHHHHHhcChHHHHHHHHH
Q 023501           86 YLLGQTLLQRNEYADGIKELEK  107 (281)
Q Consensus        86 ~~la~~~~~~g~~~~A~~~~~k  107 (281)
                      +++|.+++..|++++|+..+..
T Consensus        89 l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   89 LRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999999999999865

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.61  E-value=8.6e-08  Score=65.63  Aligned_cols=61  Identities=25%  Similarity=0.322  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKA   74 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   74 (281)
                      ....+..+|..+++.|+|++|+..+++ ...+|.+....+.+|.|++++|+|++|+..+++|
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            566777899999999999999999999 8888988888889999999999999999999875

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.61  E-value=7.6e-07  Score=83.56  Aligned_cols=97  Identities=15%  Similarity=0.185  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ   94 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~   94 (281)
                      ..|..+|-.+...+++..|+..|+.|++.+|.|..+|..+|.+|...|.|..|++.+.+|..++|.+.-+.|..+.+...
T Consensus       563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd  642 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD  642 (1238)
T ss_pred             hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence            34556899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcChHHHHHHHHHHHhh
Q 023501           95 RNEYADGIKELEKALNL  111 (281)
Q Consensus        95 ~g~~~~A~~~~~kal~~  111 (281)
                      +|+|.+|+..+...+.-
T Consensus       643 ~GkYkeald~l~~ii~~  659 (1238)
T KOG1127|consen  643 NGKYKEALDALGLIIYA  659 (1238)
T ss_pred             hhhHHHHHHHHHHHHHH
Confidence            99999999999888766

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.61  E-value=2e-06  Score=77.59  Aligned_cols=114  Identities=15%  Similarity=0.074  Sum_probs=85.0

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      |+.+.+..|.+-+.+...-...+...+|+.|..+|.+|....|+ ..+|..-+....-+++.++|++.++++++.-|++.
T Consensus       607 l~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~  685 (913)
T KOG0495|consen  607 LDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH  685 (913)
T ss_pred             HHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH
Confidence            44444444444445544445555555555555555555554443 45666677777788899999999999999999999


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      +.|..+|+++.++++.+.|...|...++.+|...+
T Consensus       686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip  720 (913)
T KOG0495|consen  686 KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP  720 (913)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch
Confidence            99999999999999999999999999999998444

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=1.2e-07  Score=84.59  Aligned_cols=74  Identities=31%  Similarity=0.550  Sum_probs=67.8

Q ss_pred             CCCCCCCCcccccCCcccccCceecC-CCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHH
Q 023501          199 DTPAEVPDYLCCKITLDIFRDPVITP-SGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDK  273 (281)
Q Consensus       199 ~~~~~~p~~~~c~i~~~~~~~pv~~~-~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~  273 (281)
                      +.-.++|++|..|++..+|+|||++| +|-+.+|+.|..|+.+.+ ++|..|.|++.+++.||..|++.|..|...
T Consensus       846 ED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~-tDPFNRmPLtlddVtpn~eLrekIn~f~k~  920 (929)
T COG5113         846 EDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDG-TDPFNRMPLTLDDVTPNAELREKINRFYKC  920 (929)
T ss_pred             hhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcCC-CCccccCCCchhhcCCCHHHHHHHHHHHhc
Confidence            33678999999999999999999877 889999999999999887 699999999999999999999999999654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.60  E-value=7.7e-08  Score=80.00  Aligned_cols=109  Identities=15%  Similarity=0.075  Sum_probs=68.6

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501            4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK   83 (281)
Q Consensus         4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (281)
                      .+..+.-|.+...+-..+.++-..+++++|+++|..+++.+|.+.++....|.-|+--++.+-|+.+|++.+.+.-.+++
T Consensus       280 ~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe  359 (478)
T KOG1129|consen  280 GEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE  359 (478)
T ss_pred             hhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH
Confidence            34445556666666666666666666777777777776666666655555555566666666666666666666666666


Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           84 GHYLLGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                      .+.++|.+.+.-++++-++..|++++...
T Consensus       360 Lf~NigLCC~yaqQ~D~~L~sf~RAlsta  388 (478)
T KOG1129|consen  360 LFCNIGLCCLYAQQIDLVLPSFQRALSTA  388 (478)
T ss_pred             HHhhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence            66666666666666666666666666554

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=6e-06  Score=75.98  Aligned_cols=54  Identities=15%  Similarity=0.285  Sum_probs=49.2

Q ss_pred             CcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcc
Q 023501          206 DYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVP  259 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~  259 (281)
                      .-+.||.|..-.+|-|++.|||.||-.||..-+......||.|+.+|...++.|
T Consensus       642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~  695 (698)
T KOG0978|consen  642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR  695 (698)
T ss_pred             hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence            358899999999999999999999999999999887778999999999887765

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.60  E-value=1.4e-06  Score=78.48  Aligned_cols=111  Identities=14%  Similarity=0.156  Sum_probs=87.8

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501            4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK   83 (281)
Q Consensus         4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (281)
                      +......|+..+.+...|..+...|+-++|..+...++..++.+..+|..+|..+..-++|++|++.|+.|++++|+|..
T Consensus        31 ~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~q  110 (700)
T KOG1156|consen   31 KQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQ  110 (700)
T ss_pred             HHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHH
Confidence            33444566777777788888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           84 GHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .+.-++....++|+++.....-.+.+++.|.
T Consensus       111 ilrDlslLQ~QmRd~~~~~~tr~~LLql~~~  141 (700)
T KOG1156|consen  111 ILRDLSLLQIQMRDYEGYLETRNQLLQLRPS  141 (700)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence            8888888888888888888877777777665

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.57  E-value=4.2e-08  Score=58.18  Aligned_cols=40  Identities=23%  Similarity=0.419  Sum_probs=33.2

Q ss_pred             ccCCcccc---cCceecCCCcccccchHHhHhccCCCCCCCCCC
Q 023501          210 CKITLDIF---RDPVITPSGVTYERAVILDHLDKVGKFDPITRE  250 (281)
Q Consensus       210 c~i~~~~~---~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~  250 (281)
                      |++|.+.+   ..|++++|||+||..||..... ....||+|++
T Consensus         2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~-~~~~CP~C~k   44 (44)
T PF14634_consen    2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLKG-KSVKCPICRK   44 (44)
T ss_pred             CcCcCccccCCCCeEEcccCCHHHHHHHHhhcC-CCCCCcCCCC
Confidence            78888888   3588999999999999999983 3336999984

>smart00184 RING Ring finger

Probab=98.57  E-value=4.4e-08  Score=56.28  Aligned_cols=39  Identities=36%  Similarity=0.624  Sum_probs=34.2

Q ss_pred             ccCCcccccCceecCCCcccccchHHhHhccCCCCCCCC
Q 023501          210 CKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPIT  248 (281)
Q Consensus       210 c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~  248 (281)
                      |+||.+...+|++++|||.||..|+..|+......||+|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            789999999999999999999999999998444459986

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.56  E-value=3.5e-05  Score=62.68  Aligned_cols=151  Identities=15%  Similarity=0.027  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch---hHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV---KGHY   86 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~~   86 (281)
                      .+..|+..|...++.|+|.+|+..|.......|..   ..+...++.++++.++|++|+..+++-+++.|.++   -++|
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            57889999999999999999999999999998875   47888899999999999999999999999998775   4778


Q ss_pred             HHHHHHHHhc--------ChHHHHHHHHHHHhhccCCCCCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           87 LLGQTLLQRN--------EYADGIKELEKALNLGRGAKPKGYIVEDI-WQELARAKYLLWEQESSKRSWELQSLKEACEA  157 (281)
Q Consensus        87 ~la~~~~~~g--------~~~~A~~~~~kal~~~p~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (281)
                      ..|.+++..=        --.+|+..|.+.+.--|++.-.......+ ......+...+..++-..+++.+..+...++.
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~  192 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE  192 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            8888876542        24678888999998888744332111111 22233344455566666777888888888888


Q ss_pred             HHHHhh
Q 023501          158 ALEEKH  163 (281)
Q Consensus       158 ~l~~~~  163 (281)
                      +++..+
T Consensus       193 v~e~y~  198 (254)
T COG4105         193 VLENYP  198 (254)
T ss_pred             HHhccc
Confidence            888643

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.56  E-value=3.1e-06  Score=75.32  Aligned_cols=102  Identities=16%  Similarity=0.064  Sum_probs=88.9

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG   89 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la   89 (281)
                      .++.+......|..+...|+.++|...+.+++.. |.++.+....+.+  ..+++++++..+++.++..|+++..++.+|
T Consensus       259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lg  335 (398)
T PRK10747        259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLG  335 (398)
T ss_pred             HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            3456778888999999999999999999999995 4455544444443  459999999999999999999999999999


Q ss_pred             HHHHHhcChHHHHHHHHHHHhhccC
Q 023501           90 QTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        90 ~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .++...|+|++|...|+++++..|+
T Consensus       336 rl~~~~~~~~~A~~~le~al~~~P~  360 (398)
T PRK10747        336 QLLMKHGEWQEASLAFRAALKQRPD  360 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999876

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.55  E-value=8.7e-06  Score=73.45  Aligned_cols=108  Identities=17%  Similarity=0.143  Sum_probs=99.9

Q ss_pred             hhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501            5 AGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG   84 (281)
Q Consensus         5 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (281)
                      .+...++...--|..+|..+-.-++|.+||++|+.|+...|+|..+|..++....++++|+.....-.+.+++.|..-..
T Consensus        66 ~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~  145 (700)
T KOG1156|consen   66 LGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRAS  145 (700)
T ss_pred             HHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHH
Confidence            34555666677789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           85 HYLLGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        85 ~~~la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                      |+-.+.++...|++..|...++...+..
T Consensus       146 w~~~Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  146 WIGFAVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999988887775

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.53  E-value=8.7e-07  Score=75.99  Aligned_cols=139  Identities=14%  Similarity=0.156  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc----Ccc
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLD----HDS   81 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~----p~~   81 (281)
                      .+...+-++|+.||-.|+|++||.+-..-+.+...      .-.++.|+|+||.-+|+++.|++.|.+.+.+.    ...
T Consensus       193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~  272 (639)
T KOG1130|consen  193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT  272 (639)
T ss_pred             hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh
Confidence            34567889999999999999999988777666322      34689999999999999999999999876543    333


Q ss_pred             --hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           82 --VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAAL  159 (281)
Q Consensus        82 --~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (281)
                        +...|.+|..|.-+.++.+||.++.+-+++.          .++...++..+.-...+......+....+..+.+..+
T Consensus       273 vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA----------qeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  273 VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA----------QELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence              4566999999999999999999999999883          3455555555554444555555555555555555544


Q ss_pred             H
Q 023501          160 E  160 (281)
Q Consensus       160 ~  160 (281)
                      +
T Consensus       343 ~  343 (639)
T KOG1130|consen  343 R  343 (639)
T ss_pred             H
Confidence            4

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.53  E-value=2.6e-06  Score=71.04  Aligned_cols=106  Identities=11%  Similarity=0.031  Sum_probs=83.5

Q ss_pred             hHHHHHHHHHH-HHhcCHHHHHHHHHHHHhhcCcc---hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHH
Q 023501           48 PIYWTNRALCH-LKRNDWTKVEADCRKAIQLDHDS---VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVE  123 (281)
Q Consensus        48 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~l~p~~---~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~  123 (281)
                      ....+..|..+ ++.|+|++|+..|+..++..|++   +.++|.+|.+|+..|++++|+..|.++++..|++...    .
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~----~  217 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA----A  217 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch----h
Confidence            46777788876 56799999999999999999988   5899999999999999999999999999998875443    1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023501          124 DIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLD  166 (281)
Q Consensus       124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  166 (281)
                      .....         .+......++...+...++.+++..|...
T Consensus       218 dAl~k---------lg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        218 DAMFK---------VGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHH---------HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            22221         22233356778888899999988776543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.44  E-value=3.6e-05  Score=70.08  Aligned_cols=65  Identities=15%  Similarity=0.031  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           50 YWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +++.+|+.|-.+|++++|+.++++||...|..++.|+..|.++.+.|++.+|...++.|..+++.
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~  260 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA  260 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh
Confidence            56778999999999999999999999999999999999999999999999999999999999654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.44  E-value=8.3e-07  Score=78.17  Aligned_cols=104  Identities=23%  Similarity=0.302  Sum_probs=94.9

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhcCcchhHHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN---DWTKVEADCRKAIQLDHDSVKGHY   86 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~~~a~~   86 (281)
                      -++.++.++..|+..|..+....|+..|.+++...|....+|.|+|.++++.+   +--.|+.++..|++++|...+||+
T Consensus       370 L~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~  449 (758)
T KOG1310|consen  370 LPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHF  449 (758)
T ss_pred             chHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHH
Confidence            46788999999999999999999999999999999999999999999998764   677899999999999999999999


Q ss_pred             HHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501           87 LLGQTLLQRNEYADGIKELEKALNLGR  113 (281)
Q Consensus        87 ~la~~~~~~g~~~~A~~~~~kal~~~p  113 (281)
                      +|+.++..++++.+|++....+....|
T Consensus       450 ~la~aL~el~r~~eal~~~~alq~~~P  476 (758)
T KOG1310|consen  450 RLARALNELTRYLEALSCHWALQMSFP  476 (758)
T ss_pred             HHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence            999999999999999998776555545

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.42  E-value=5.5e-06  Score=78.00  Aligned_cols=113  Identities=19%  Similarity=0.200  Sum_probs=92.2

Q ss_pred             hhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch------------------------------------
Q 023501            5 AGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP------------------------------------   48 (281)
Q Consensus         5 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------------------------------------   48 (281)
                      +++..++.-|-++-.+|..|...-|-..|..+|.+|.+++++++                                    
T Consensus       483 ~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k  562 (1238)
T KOG1127|consen  483 RALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACK  562 (1238)
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHH
Confidence            45556667777777788887766677778888888888877753                                    


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           49 IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      ..|..+|..|.+.++..+|+.+++.|+..+|.+...|..+|++|...|++.-|++.|.|+..++|...-
T Consensus       563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y  631 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY  631 (1238)
T ss_pred             hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence            234446777777778888999999999999999999999999999999999999999999999887433

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.40  E-value=3.4e-06  Score=70.41  Aligned_cols=95  Identities=11%  Similarity=-0.026  Sum_probs=65.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcCh
Q 023501           19 LDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEY   98 (281)
Q Consensus        19 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~   98 (281)
                      .+|..|++.|.+.+|.+.++.++...|. ++.+..++.+|....+...|+..+.+.+..-|.+...+.-.+.++..++++
T Consensus       228 Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~  306 (478)
T KOG1129|consen  228 QMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ  306 (478)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence            4577777777777777777777766653 556666666777777777777777777777777766666667777777777


Q ss_pred             HHHHHHHHHHHhhccC
Q 023501           99 ADGIKELEKALNLGRG  114 (281)
Q Consensus        99 ~~A~~~~~kal~~~p~  114 (281)
                      ++|+++|..++++.|.
T Consensus       307 ~~a~~lYk~vlk~~~~  322 (478)
T KOG1129|consen  307 EDALQLYKLVLKLHPI  322 (478)
T ss_pred             HHHHHHHHHHHhcCCc
Confidence            7777777777776655

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.39  E-value=8.9e-07  Score=52.50  Aligned_cols=42  Identities=24%  Similarity=0.222  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501           49 IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ   90 (281)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~   90 (281)
                      .++..+|.+|..+|++++|++.++++++.+|+++.++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            456777777777777777777777777777777777777765

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=4e-08  Score=81.82  Aligned_cols=66  Identities=15%  Similarity=0.154  Sum_probs=56.1

Q ss_pred             CCcccccCCcccccCceecC-CCcccccchHHhHhccCCCCCCCCCCCcC-CCCCcccHHHHHHHHHH
Q 023501          205 PDYLCCKITLDIFRDPVITP-SGVTYERAVILDHLDKVGKFDPITREPLR-ESQLVPNLAIKEAVRAY  270 (281)
Q Consensus       205 p~~~~c~i~~~~~~~pv~~~-~g~~~~~~~i~~~~~~~~~~cP~~~~~~~-~~~~~~n~~l~~~i~~~  270 (281)
                      -..+.||||..+++.-.+++ |+|.||..||-..++.++..||-||+.+- ...|.++.+.-.+|.+.
T Consensus        41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i  108 (381)
T KOG0311|consen   41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI  108 (381)
T ss_pred             hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence            45789999999999999876 99999999999999988888999999875 55788877777776654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.35  E-value=1e-06  Score=49.03  Aligned_cols=32  Identities=19%  Similarity=0.249  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc
Q 023501           49 IYWTNRALCHLKRNDWTKVEADCRKAIQLDHD   80 (281)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~   80 (281)
                      .+|+++|.+|..+|++++|+.++++|++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45666666666666666666666666666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.35  E-value=5.4e-07  Score=50.09  Aligned_cols=31  Identities=23%  Similarity=0.443  Sum_probs=15.5

Q ss_pred             HHHHHhhcCcchhHHHHHHHHHHHhcChHHH
Q 023501           71 CRKAIQLDHDSVKGHYLLGQTLLQRNEYADG  101 (281)
Q Consensus        71 ~~~al~l~p~~~~a~~~la~~~~~~g~~~~A  101 (281)
                      |++||+++|+++.+|+.+|.+|...|++++|
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence            3444555555555555555555555555444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.34  E-value=5e-07  Score=50.23  Aligned_cols=33  Identities=30%  Similarity=0.391  Sum_probs=31.3

Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHH
Q 023501           36 AYTEAITLCPNVPIYWTNRALCHLKRNDWTKVE   68 (281)
Q Consensus        36 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~   68 (281)
                      +|++||+++|+++.+|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            488999999999999999999999999999986

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.34  E-value=7.9e-06  Score=70.25  Aligned_cols=102  Identities=18%  Similarity=0.218  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhcCH
Q 023501           11 AKQAEQLRLDGNYYFSKDRY--------------------GAAIDAYTEAITLCPN------VPIYWTNRALCHLKRNDW   64 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~--------------------~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~   64 (281)
                      .-.+.+++++|++|-.+|+-                    +.|+++|..-+++...      ...+|-|+|+.|+-+|+|
T Consensus       132 v~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf  211 (639)
T KOG1130|consen  132 VLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDF  211 (639)
T ss_pred             HhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccH
Confidence            34578899999999877653                    4577777777666433      357899999999999999


Q ss_pred             HHHHHHHHHHHhhcCcc------hhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           65 TKVEADCRKAIQLDHDS------VKGHYLLGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        65 ~~A~~~~~~al~l~p~~------~~a~~~la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                      +.|+..-+.-+.+...+      -.++-++|.+++-+|+++.|+++|.+.+.+.
T Consensus       212 ~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA  265 (639)
T KOG1130|consen  212 DQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA  265 (639)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence            99999888877776543      4689999999999999999999999998874

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.34  E-value=2.9e-05  Score=67.62  Aligned_cols=102  Identities=19%  Similarity=0.078  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT   91 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~   91 (281)
                      ++++++..++++|-...+..+||++|.++..+-|+++.+++.+|..|-+.|+-.+|..+.-...+.-|.+.+..-++|.-
T Consensus       556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ay  635 (840)
T KOG2003|consen  556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAY  635 (840)
T ss_pred             hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHH
Confidence            34444444444444444455555555555555555555555555555444444444444444444444444444444444


Q ss_pred             HHHhcChHHHHHHHHHHHhhcc
Q 023501           92 LLQRNEYADGIKELEKALNLGR  113 (281)
Q Consensus        92 ~~~~g~~~~A~~~~~kal~~~p  113 (281)
                      |+...-+++|+.+|+++--+.|
T Consensus       636 yidtqf~ekai~y~ekaaliqp  657 (840)
T KOG2003|consen  636 YIDTQFSEKAINYFEKAALIQP  657 (840)
T ss_pred             HHhhHHHHHHHHHHHHHHhcCc
Confidence            4444445555555555554433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.32  E-value=1.4e-05  Score=65.45  Aligned_cols=104  Identities=18%  Similarity=0.146  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHH
Q 023501           51 WTNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQ  127 (281)
Q Consensus        51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~  127 (281)
                      .++.|.-+++.|+|..|...|..-++.-|+.   +.++|+||++++.+|+|+.|...|..+.+-.|+++..         
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA---------  214 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA---------  214 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC---------
Confidence            7888999999999999999999999998875   7899999999999999999999999999998875554         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 023501          128 ELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDI  167 (281)
Q Consensus       128 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  167 (281)
                          .+..+..+....+.++.+++...+..++++.|....
T Consensus       215 ----pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         215 ----PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             ----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence                123445556667788899999999999998775443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.31  E-value=0.00013  Score=58.58  Aligned_cols=117  Identities=15%  Similarity=0.143  Sum_probs=80.9

Q ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHH
Q 023501           47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVE  123 (281)
Q Consensus        47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~  123 (281)
                      ++..++..|..++..|+|.+|+..+++++..-|..   ..+.+.+|.+++..|++++|+..+++.+...|.+..    ..
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~----~~   79 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK----AD   79 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT----HH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc----hh
Confidence            46778888999999999999999999999988764   689999999999999999999999999999888554    33


Q ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 023501          124 DIWQELARAKYLLWEQ--ESSKRSWELQSLKEACEAALEEKHVLDI  167 (281)
Q Consensus       124 ~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~  167 (281)
                      .+.-.++.+.......  ...........+...++.++...|...-
T Consensus        80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y  125 (203)
T PF13525_consen   80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY  125 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT
T ss_pred             hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH
Confidence            3433333332222111  1134456667788888888888776443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.31  E-value=6.8e-06  Score=64.08  Aligned_cols=74  Identities=16%  Similarity=0.189  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG   84 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (281)
                      ..++-.|.+.|-++++.+.++.||.-+++||+++|++..++..||.+|-++.+|++|+.+|.+.++++|..-.+
T Consensus       131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea  204 (271)
T KOG4234|consen  131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA  204 (271)
T ss_pred             HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence            34566788999999999999999999999999999999999999999999999999999999999999975543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.31  E-value=2.3e-05  Score=72.02  Aligned_cols=131  Identities=20%  Similarity=0.162  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ   94 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~   94 (281)
                      ..|...|..+.+.+.-++|-.++.+|-.++|..+..|+.+|.++...|++++|...|..|+.+||+++.....+|.++..
T Consensus       651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle  730 (799)
T KOG4162|consen  651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE  730 (799)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            45566778888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcChHHHHH--HHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           95 RNEYADGIK--ELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEE  161 (281)
Q Consensus        95 ~g~~~~A~~--~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (281)
                      .|+..-|..  .+..+++++|.+       .+.+..++..-+         ..|+.+.+-..+..+++.
T Consensus       731 ~G~~~la~~~~~L~dalr~dp~n-------~eaW~~LG~v~k---------~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  731 LGSPRLAEKRSLLSDALRLDPLN-------HEAWYYLGEVFK---------KLGDSKQAAECFQAALQL  783 (799)
T ss_pred             hCCcchHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHH---------HccchHHHHHHHHHHHhh
Confidence            999988888  999999998873       355655555433         345555566666666554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.30  E-value=1.8e-05  Score=67.09  Aligned_cols=138  Identities=19%  Similarity=0.170  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-----C-
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-----H-   79 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-----p-   79 (281)
                      +.+..+...|+.|-..|+|++|...|.++.+..-.      -+..|...+.+|.+. ++++|+..+++|+.+-     | 
T Consensus        33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~  111 (282)
T PF14938_consen   33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFS  111 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HH
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHH
Confidence            45677888899999999999999999999766321      246777778887666 9999999999999873     1 


Q ss_pred             cchhHHHHHHHHHHHh-cChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           80 DSVKGHYLLGQTLLQR-NEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAA  158 (281)
Q Consensus        80 ~~~~a~~~la~~~~~~-g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (281)
                      .-.+.+..+|.+|... |++++|++.|++|+++-...+.          ...........+.-..+.+++.++...+++.
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~----------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~  181 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS----------PHSAAECLLKAADLYARLGRYEEAIEIYEEV  181 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC----------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            2367899999999999 9999999999999998543221          1111122233333444556777777777766


Q ss_pred             HH
Q 023501          159 LE  160 (281)
Q Consensus       159 l~  160 (281)
                      ..
T Consensus       182 ~~  183 (282)
T PF14938_consen  182 AK  183 (282)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.28  E-value=7.8e-05  Score=61.63  Aligned_cols=73  Identities=10%  Similarity=0.022  Sum_probs=65.3

Q ss_pred             CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH---HHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501           46 NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG---HYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK  118 (281)
Q Consensus        46 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a---~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~  118 (281)
                      .++..++..|.-++..|+|++|+..+++++...|..+.+   .+.+|.+++..+++++|+..+++.+++.|+++..
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~  105 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI  105 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence            356778888999999999999999999999999987654   4999999999999999999999999999986653

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.27  E-value=1.2e-05  Score=67.55  Aligned_cols=98  Identities=14%  Similarity=0.113  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHH
Q 023501           51 WTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELA  130 (281)
Q Consensus        51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~  130 (281)
                      .-.+|+-|++.|.|++|++.|.+++.++|.|+..+.++|.+|+.+.+|..|...+..|+.++..         .+.    
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~---------Y~K----  166 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL---------YVK----  166 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH---------HHH----
Confidence            3457899999999999999999999999999999999999999999999999999999999322         121    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501          131 RAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                         .+-..+......+...++++..+.+|+.++.
T Consensus       167 ---AYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~  197 (536)
T KOG4648|consen  167 ---AYSRRMQARESLGNNMEAKKDCETVLALEPK  197 (536)
T ss_pred             ---HHHHHHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence               2222233334456667777777777777654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.27  E-value=4.1e-05  Score=69.46  Aligned_cols=114  Identities=16%  Similarity=0.091  Sum_probs=83.7

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      +|+++++.-|.-...|..+|+++-+.++.+.|...|...+...|+...+|..++..--+.|+.-.|...++++...+|.+
T Consensus       673 llEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~  752 (913)
T KOG0495|consen  673 LLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN  752 (913)
T ss_pred             HHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc
Confidence            45666666666677777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      ...|...-.+-+..|..+.|.....+||+-+|++
T Consensus       753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s  786 (913)
T KOG0495|consen  753 ALLWLESIRMELRAGNKEQAELLMAKALQECPSS  786 (913)
T ss_pred             chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence            7777777777777777777777777777777763

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.25  E-value=6.4e-06  Score=69.81  Aligned_cols=84  Identities=17%  Similarity=0.171  Sum_probs=41.4

Q ss_pred             CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcCh-HHHHHHHHH
Q 023501           29 RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEY-ADGIKELEK  107 (281)
Q Consensus        29 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~-~~A~~~~~k  107 (281)
                      .+++|...|+...+..+.++.+++.+|.|++.+|+|++|...+.+|+..+|.++.++.+++.+...+|+. +.+...+.+
T Consensus       182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q  261 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ  261 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            3555555555544444445555555555555555555555555555555555555555555555555555 333334444


Q ss_pred             HHhhc
Q 023501          108 ALNLG  112 (281)
Q Consensus       108 al~~~  112 (281)
                      .....
T Consensus       262 L~~~~  266 (290)
T PF04733_consen  262 LKQSN  266 (290)
T ss_dssp             CHHHT
T ss_pred             HHHhC
Confidence            33343

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.25  E-value=7e-05  Score=56.79  Aligned_cols=98  Identities=18%  Similarity=0.114  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----------------------hHHHHHHHHHHHHhcCHHHHHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV----------------------PIYWTNRALCHLKRNDWTKVEADC   71 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~~~~   71 (281)
                      -+.+...|......++...++..+.+++.+..++                      ..+...++..+...|++++|+..+
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~   85 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL   85 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            3455566777888899999999999999885331                      246666778888999999999999


Q ss_pred             HHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           72 RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        72 ~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      ++++.++|.+-.+|..+..+|..+|+..+|+..|.++...
T Consensus        86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988655

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=98.24  E-value=4.8e-05  Score=57.91  Aligned_cols=101  Identities=9%  Similarity=-0.030  Sum_probs=77.7

Q ss_pred             CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHH
Q 023501           44 CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVE  123 (281)
Q Consensus        44 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~  123 (281)
                      .++.-...+..|.-++..|++++|...|+-...++|.+++.++.||-++-.+++|++|+..|..+..++++.+...    
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~----  108 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV----  108 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc----
Confidence            3334456677788889999999999999999999999999999999999999999999999999999987644432    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501          124 DIWQELARAKYLLWEQESSKRSWELQSLKEACEAALE  160 (281)
Q Consensus       124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  160 (281)
                                  ...+......++...+...+..+++
T Consensus       109 ------------f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        109 ------------FFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             ------------chHHHHHHHhCCHHHHHHHHHHHHh
Confidence                        2233333344455555555555555

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=98.22  E-value=4.5e-07  Score=75.22  Aligned_cols=65  Identities=12%  Similarity=0.246  Sum_probs=53.2

Q ss_pred             CCcccccCCcccccCcee-cCCCcccccchHHhHhccCCCCCCCCCCCcCCC----CCcccHHHHHHHHHH
Q 023501          205 PDYLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVGKFDPITREPLRES----QLVPNLAIKEAVRAY  270 (281)
Q Consensus       205 p~~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~----~~~~n~~l~~~i~~~  270 (281)
                      -....|++|..+|.|+-+ +-|=||||++||..++.... +||.|+..+...    .+.++..|..++-.+
T Consensus        13 n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~-~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL   82 (331)
T KOG2660|consen   13 NPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESK-YCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL   82 (331)
T ss_pred             ccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhc-cCCccceeccCccccccCCcchHHHHHHHHH
Confidence            356789999999999996 45889999999999999866 599998776533    577788887777665

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.20  E-value=1e-05  Score=62.19  Aligned_cols=79  Identities=18%  Similarity=0.064  Sum_probs=61.6

Q ss_pred             hhhchHHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC-----------H
Q 023501            6 GLAGVAKQAEQLRLDGNYYFSKD----------RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRND-----------W   64 (281)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~~----------~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-----------~   64 (281)
                      ....+|..++.+..-|.+++...          -+++|+..|++||.++|+...++.++|++|..++.           |
T Consensus        17 ~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F   96 (186)
T PF06552_consen   17 AYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYF   96 (186)
T ss_dssp             HHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred             HHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHH
Confidence            34557888899988888886553          45789999999999999999999999999998874           8


Q ss_pred             HHHHHHHHHHHhhcCcchhH
Q 023501           65 TKVEADCRKAIQLDHDSVKG   84 (281)
Q Consensus        65 ~~A~~~~~~al~l~p~~~~a   84 (281)
                      ++|..+|++|+..+|.+.-.
T Consensus        97 ~kA~~~FqkAv~~~P~ne~Y  116 (186)
T PF06552_consen   97 EKATEYFQKAVDEDPNNELY  116 (186)
T ss_dssp             HHHHHHHHHHHHH-TT-HHH
T ss_pred             HHHHHHHHHHHhcCCCcHHH
Confidence            88999999999999987653

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=98.17  E-value=1.8e-06  Score=75.92  Aligned_cols=69  Identities=23%  Similarity=0.451  Sum_probs=54.5

Q ss_pred             CCCCCCcccccCCcccccCcee-cCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcc-cHHHHHHHHHH
Q 023501          201 PAEVPDYLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVP-NLAIKEAVRAY  270 (281)
Q Consensus       201 ~~~~p~~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~-n~~l~~~i~~~  270 (281)
                      +..+...+.||+|..++.+|+. +.|||.||..||..|+..++ .||.|+.++.....++ ...+++.+..+
T Consensus        15 ~~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~-~cp~~~~~~~~~~~~~~~~~~~~~~~~l   85 (391)
T KOG0297|consen   15 GRPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQ-KCPVCRQELTQAEELPVPRALRRELLKL   85 (391)
T ss_pred             CCCCcccccCccccccccCCCCCCCCCCcccccccchhhccCc-CCcccccccchhhccCchHHHHHHHHhc
Confidence            3346678999999999999998 49999999999999999855 5999999988776665 33344444433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.16  E-value=4.5e-05  Score=55.60  Aligned_cols=67  Identities=19%  Similarity=0.121  Sum_probs=60.0

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc---chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           48 PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD---SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +.+.+++|.++-.+|+.++|+..|++++.....   -..++..+|.++..+|++++|+..+++++...|+
T Consensus         1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            356789999999999999999999999997644   3679999999999999999999999999988665

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.15  E-value=5.6e-05  Score=64.03  Aligned_cols=109  Identities=15%  Similarity=0.088  Sum_probs=86.4

Q ss_pred             hHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc--
Q 023501           10 VAKQAEQLRLDGNYYFSK-DRYGAAIDAYTEAITLCPN------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD--   80 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--   80 (281)
                      ....+..+..+|..+... |++++|+.+|.+|+++...      -..++.+.|.++..+|+|++|+..++++....-+  
T Consensus       110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~  189 (282)
T PF14938_consen  110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN  189 (282)
T ss_dssp             HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence            455688899999999998 9999999999999988322      2467888999999999999999999999875321  


Q ss_pred             ----ch-hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501           81 ----SV-KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK  118 (281)
Q Consensus        81 ----~~-~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~  118 (281)
                          +. ..++..+.+++..|++..|...+++....+|.....
T Consensus       190 l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s  232 (282)
T PF14938_consen  190 LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS  232 (282)
T ss_dssp             TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred             ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence                23 345677889999999999999999999998876554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.15  E-value=5.9e-06  Score=48.90  Aligned_cols=42  Identities=19%  Similarity=0.146  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRAL   56 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~   56 (281)
                      ..+..+|..+...|++++|+..|+++++.+|+++.++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            568889999999999999999999999999999999998875

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.15  E-value=6.1e-06  Score=45.71  Aligned_cols=31  Identities=16%  Similarity=0.269  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc
Q 023501           50 YWTNRALCHLKRNDWTKVEADCRKAIQLDHD   80 (281)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~   80 (281)
                      +++.+|.+++.+|++++|+..++++++++|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            3444444444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.14  E-value=6e-05  Score=59.66  Aligned_cols=107  Identities=16%  Similarity=0.101  Sum_probs=86.6

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501            4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK   83 (281)
Q Consensus         4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (281)
                      .++....|+.+.++..+|.-+...|+|+.|.+.|+..++++|..--+..|||.+++-.|+|+-|.+++.+--.-||++|-
T Consensus        89 tQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785          89 SQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             hhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence            35666789999999999999999999999999999999999999999999999999999999999999999999999875


Q ss_pred             HHHHHHHHHHHhcChHHHH-HHHHHHHhh
Q 023501           84 GHYLLGQTLLQRNEYADGI-KELEKALNL  111 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~-~~~~kal~~  111 (281)
                      --..+-..-.. -++.+|. ...+++..+
T Consensus       169 R~LWLYl~E~k-~dP~~A~tnL~qR~~~~  196 (297)
T COG4785         169 RSLWLYLNEQK-LDPKQAKTNLKQRAEKS  196 (297)
T ss_pred             HHHHHHHHHhh-CCHHHHHHHHHHHHHhc
Confidence            44433322222 2455554 344455444

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=98.10  E-value=1.2e-06  Score=75.04  Aligned_cols=51  Identities=39%  Similarity=0.760  Sum_probs=45.7

Q ss_pred             ccccCCcccccCceecC-CCcccccchHHhHhccCCCCCCCCCCCcCCCCCcc
Q 023501          208 LCCKITLDIFRDPVITP-SGVTYERAVILDHLDKVGKFDPITREPLRESQLVP  259 (281)
Q Consensus       208 ~~c~i~~~~~~~pv~~~-~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~  259 (281)
                      +.|.|++++-.+||++| +||.|+|.-|++++..++. ||+++++++.+++++
T Consensus         1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~-DPIt~~pLs~eelV~   52 (506)
T KOG0289|consen    1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGK-DPITNEPLSIEELVE   52 (506)
T ss_pred             CeecccCCCCCCccccccccchHHHHHHHHHHHHcCC-CCCCCCcCCHHHeee
Confidence            57999999999999977 9999999999999999985 999999998766554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.09  E-value=8.6e-06  Score=45.18  Aligned_cols=34  Identities=35%  Similarity=0.513  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV   47 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   47 (281)
                      |..+..+|..++..|+|++|+..|++|++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            5789999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.08  E-value=1.1e-05  Score=44.66  Aligned_cols=34  Identities=32%  Similarity=0.501  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV   47 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   47 (281)
                      |+.+..+|..++..|+|++|+.+|++++.++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            5788999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.07  E-value=3.3e-06  Score=55.81  Aligned_cols=39  Identities=26%  Similarity=0.479  Sum_probs=31.8

Q ss_pred             ccCCcccccC------------ce-ecCCCcccccchHHhHhccCCCCCCCCC
Q 023501          210 CKITLDIFRD------------PV-ITPSGVTYERAVILDHLDKVGKFDPITR  249 (281)
Q Consensus       210 c~i~~~~~~~------------pv-~~~~g~~~~~~~i~~~~~~~~~~cP~~~  249 (281)
                      |.||.+.+.+            |+ ..+|||.|-..||.+|+..+. +||+||
T Consensus        22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR   73 (73)
T PF12678_consen   22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPLCR   73 (73)
T ss_dssp             ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TTSS
T ss_pred             ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCCCC
Confidence            9999988844            33 468999999999999998777 699997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.07  E-value=0.00016  Score=51.50  Aligned_cols=98  Identities=10%  Similarity=0.086  Sum_probs=78.8

Q ss_pred             HHHHH--HHHHHHHhcCCHHHHHHHHHHHHHhCCC------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--
Q 023501           14 AEQLR--LDGNYYFSKDRYGAAIDAYTEAITLCPN------------VPIYWTNRALCHLKRNDWTKVEADCRKAIQL--   77 (281)
Q Consensus        14 a~~~~--~~g~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--   77 (281)
                      +..|.  ..|...+..|-|++|...|.+|.+...+            |+.++..++.++..+|+|++++...++++..  
T Consensus         7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN   86 (144)
T PF12968_consen    7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN   86 (144)
T ss_dssp             HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence            34444  4466778899999999999999987433            5678899999999999999999988888763  


Q ss_pred             -----cC----cchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           78 -----DH----DSVKGHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        78 -----~p----~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                           +.    .|+.+.+..|.++-.+|+.++|+..|+++-++
T Consensus        87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                 33    36778899999999999999999999988766

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.00032  Score=63.09  Aligned_cols=141  Identities=14%  Similarity=0.075  Sum_probs=103.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-------------------
Q 023501           18 RLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-------------------   78 (281)
Q Consensus        18 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------------------   78 (281)
                      ++.+.+.|+.++.++|+..++   ..++.+..+...+|+.++++|+|++|++.|+..++.+                   
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l  159 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL  159 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence            688899999999999999998   5667777788889999999999999999999886543                   


Q ss_pred             -----------Cc-chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           79 -----------HD-SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK-GYIVEDIWQELARAKYLLWEQESSKRS  145 (281)
Q Consensus        79 -----------p~-~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~  145 (281)
                                 |. ..+.+|+.|-++...|+|.+|++.+++++.++...-.. ...-+.+..++.-++..+..  -....
T Consensus       160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay--VlQ~~  237 (652)
T KOG2376|consen  160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY--VLQLQ  237 (652)
T ss_pred             hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH--HHHHh
Confidence                       22 45678999999999999999999999998776542111 11235666666655544333  23345


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 023501          146 WELQSLKEACEAALEEKH  163 (281)
Q Consensus       146 ~~~~~~~~~~~~~l~~~~  163 (281)
                      |+-.++.......+...+
T Consensus       238 Gqt~ea~~iy~~~i~~~~  255 (652)
T KOG2376|consen  238 GQTAEASSIYVDIIKRNP  255 (652)
T ss_pred             cchHHHHHHHHHHHHhcC
Confidence            666666665555555544

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=3.4e-06  Score=68.92  Aligned_cols=48  Identities=21%  Similarity=0.197  Sum_probs=43.2

Q ss_pred             CCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501          205 PDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLR  253 (281)
Q Consensus       205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~  253 (281)
                      +-.|.|-||...|.+||+|.|||.||..|-...++.+.. |++|++...
T Consensus       239 ~~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~-c~vC~~~t~  286 (313)
T KOG1813|consen  239 LLPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEK-CYVCSQQTH  286 (313)
T ss_pred             cCCccccccccccccchhhcCCceeehhhhccccccCCc-ceecccccc
Confidence            456889999999999999999999999999999998774 999988754

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.02  E-value=0.00012  Score=64.46  Aligned_cols=90  Identities=19%  Similarity=0.158  Sum_probs=81.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHH
Q 023501           22 NYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADG  101 (281)
Q Consensus        22 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A  101 (281)
                      ..+-..++++.|+..+++....+|.   +...+|.++...++-.+|++.+.++++..|.+...+...|..+...++++.|
T Consensus       177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA  253 (395)
T PF09295_consen  177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA  253 (395)
T ss_pred             HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence            3344567899999999998888875   5556899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccC
Q 023501          102 IKELEKALNLGRG  114 (281)
Q Consensus       102 ~~~~~kal~~~p~  114 (281)
                      +...++++.+.|+
T Consensus       254 L~iAk~av~lsP~  266 (395)
T PF09295_consen  254 LEIAKKAVELSPS  266 (395)
T ss_pred             HHHHHHHHHhCch
Confidence            9999999999887

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=6.2e-06  Score=65.50  Aligned_cols=52  Identities=25%  Similarity=0.519  Sum_probs=46.2

Q ss_pred             cccccCCcccccC----ceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcc
Q 023501          207 YLCCKITLDIFRD----PVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVP  259 (281)
Q Consensus       207 ~~~c~i~~~~~~~----pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~  259 (281)
                      .+.||+|.+.+++    .|+.||||++|..|.+..+.... .||+|+.+++.+++++
T Consensus       221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~-v~pv~d~plkdrdiI~  276 (303)
T KOG3039|consen  221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM-VDPVTDKPLKDRDIIG  276 (303)
T ss_pred             ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc-cccCCCCcCcccceEe
Confidence            4899999999998    44679999999999999999887 5999999999888775

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.90  E-value=0.00085  Score=50.01  Aligned_cols=72  Identities=10%  Similarity=0.093  Sum_probs=64.6

Q ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc---chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501           47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD---SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK  118 (281)
Q Consensus        47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~  118 (281)
                      .+..++..|...++.|+|++|++.++.....-|.   ...+.+.+|.+|+..|++++|+..+++-+++.|.++..
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            4567788888899999999999999999888774   46899999999999999999999999999999987765

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.89  E-value=0.00025  Score=60.21  Aligned_cols=103  Identities=16%  Similarity=0.037  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc--CHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN--DWTKVEADCRKAIQLDHDSVKGHYLLG   89 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~l~p~~~~a~~~la   89 (281)
                      ...+.....-..+++.++++.|.+.+...-+.+.+...+....|.+.+..|  ++.+|...|++....-+.++..+..+|
T Consensus       129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A  208 (290)
T PF04733_consen  129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA  208 (290)
T ss_dssp             TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            345666677788999999999999999988877776555555555555555  699999999998887788999999999


Q ss_pred             HHHHHhcChHHHHHHHHHHHhhccC
Q 023501           90 QTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        90 ~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .+++.+|+|++|...+.+++..+|.
T Consensus       209 ~~~l~~~~~~eAe~~L~~al~~~~~  233 (290)
T PF04733_consen  209 VCHLQLGHYEEAEELLEEALEKDPN  233 (290)
T ss_dssp             HHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhccC
Confidence            9999999999999999999988766

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.88  E-value=0.00043  Score=50.43  Aligned_cols=63  Identities=17%  Similarity=0.176  Sum_probs=58.3

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           52 TNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        52 ~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      -..|.+....|+.+.|++-|.+++.+-|..+.+|.+.++++.-+|+.++|++.+++++++..+
T Consensus        47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~  109 (175)
T KOG4555|consen   47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD  109 (175)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence            345777889999999999999999999999999999999999999999999999999999544

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.0005  Score=56.15  Aligned_cols=109  Identities=14%  Similarity=0.135  Sum_probs=94.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----C--CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL----C--PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK   83 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (281)
                      ++..+.....+|...++.||-+.|..+|+..-..    +  ...-.+..|.+.+|...+++..|...+.+++..||.++.
T Consensus       208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~  287 (366)
T KOG2796|consen  208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV  287 (366)
T ss_pred             CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence            4667788889999999999999999999954332    2  234567777888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501           84 GHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK  118 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~  118 (281)
                      +-...|.+++.+|+..+|++..+.++...|.+...
T Consensus       288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~  322 (366)
T KOG2796|consen  288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH  322 (366)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence            99999999999999999999999999998875544

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.84  E-value=4.6e-06  Score=63.96  Aligned_cols=46  Identities=15%  Similarity=0.215  Sum_probs=41.1

Q ss_pred             cccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501          207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLR  253 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~  253 (281)
                      .|.|.||..-+..||+|.|||.||..|-..-+..+. .|-+|+....
T Consensus       196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~-~C~~Cgk~t~  241 (259)
T COG5152         196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGD-ECGVCGKATY  241 (259)
T ss_pred             ceeehhchhhccchhhhhcchhHHHHHHHHHhccCC-cceecchhhc
Confidence            488999999999999999999999999988888777 5999987644

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.80  E-value=5e-05  Score=41.96  Aligned_cols=30  Identities=17%  Similarity=0.144  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 023501           50 YWTNRALCHLKRNDWTKVEADCRKAIQLDH   79 (281)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p   79 (281)
                      +|..+|.+|..+|++++|+..++++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            344445555555555555555555555444

...

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=1.5e-05  Score=65.40  Aligned_cols=47  Identities=17%  Similarity=0.088  Sum_probs=42.1

Q ss_pred             cccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501          209 CCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRES  255 (281)
Q Consensus       209 ~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~  255 (281)
                      .|+||..-+.-||.++|+|.||.-||.-.......+||+||.+++..
T Consensus         9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            49999999999999999999999999998776666799999998753

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=0.00093  Score=56.82  Aligned_cols=100  Identities=18%  Similarity=0.238  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh--------------hcC-
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQ--------------LDH-   79 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--------------l~p-   79 (281)
                      ..-..+|..+|..|+|++|+..|+-+...+.-++.++.++|.|++-+|.|.+|.....+|-+              ++. 
T Consensus        58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE  137 (557)
T KOG3785|consen   58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE  137 (557)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence            34445799999999999999999999887777889999999999999999999877666522              221 


Q ss_pred             -----------cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           80 -----------DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        80 -----------~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                                 +..+-...+|.+.+..-.|.+|++.|.+++.-+|+
T Consensus       138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e  183 (557)
T KOG3785|consen  138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE  183 (557)
T ss_pred             HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence                       12233344555666666789999999988887665

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.73  E-value=0.00068  Score=56.36  Aligned_cols=138  Identities=17%  Similarity=0.195  Sum_probs=88.2

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHH----------Hhh-
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKA----------IQL-   77 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a----------l~l-   77 (281)
                      ..|..-..+..+|..|+..++|..|..+|.+.-.+.|..+.....-|+.+++.+.+.+|+......          +++ 
T Consensus        39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLq  118 (459)
T KOG4340|consen   39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQ  118 (459)
T ss_pred             cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            344455566777777777777777777777777777777666666666666666666665543221          111 


Q ss_pred             -----c--------------C--cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHH
Q 023501           78 -----D--------------H--DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLL  136 (281)
Q Consensus        78 -----~--------------p--~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~  136 (281)
                           .              |  +........|-++++.|++++|++-|+.+++...-++.                ...
T Consensus       119 aAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl----------------lAY  182 (459)
T KOG4340|consen  119 AAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL----------------LAY  182 (459)
T ss_pred             HHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch----------------hHH
Confidence                 1              2  34455666667777777777777777777766322111                233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023501          137 WEQESSKRSWELQSLKEACEAALEEK  162 (281)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (281)
                      ..+....+.+++..+.+.+.+.+++.
T Consensus       183 niALaHy~~~qyasALk~iSEIieRG  208 (459)
T KOG4340|consen  183 NLALAHYSSRQYASALKHISEIIERG  208 (459)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence            44455667788888888888887754

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=0.003  Score=53.85  Aligned_cols=87  Identities=16%  Similarity=0.102  Sum_probs=76.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHH
Q 023501           22 NYYFSKDRYGAAIDAYTEAITLCPNV-PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYAD  100 (281)
Q Consensus        22 ~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~  100 (281)
                      ..++..+||..|+..++-....+... ...-..+|.|++.+|+|++|+..|..+...+..+.+.+.++|-+++-+|.|.+
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e  109 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE  109 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence            45678899999999999888766543 46778899999999999999999999999887889999999999999999999


Q ss_pred             HHHHHHHH
Q 023501          101 GIKELEKA  108 (281)
Q Consensus       101 A~~~~~ka  108 (281)
                      |.+...++
T Consensus       110 A~~~~~ka  117 (557)
T KOG3785|consen  110 AKSIAEKA  117 (557)
T ss_pred             HHHHHhhC
Confidence            98877665

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.69  E-value=2.7e-05  Score=68.34  Aligned_cols=92  Identities=13%  Similarity=0.096  Sum_probs=84.7

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      .-+++..+|+.|..+.+++.++++.++|..|+.-+.+||+.+|....+|+.+|.+.+.++.+.+|+.++++...+.|+.+
T Consensus        27 ysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~  106 (476)
T KOG0376|consen   27 YSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDP  106 (476)
T ss_pred             HHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcH
Confidence            34678888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHH
Q 023501           83 KGHYLLGQTLLQ   94 (281)
Q Consensus        83 ~a~~~la~~~~~   94 (281)
                      .+...+.++-.-
T Consensus       107 ~~~r~~~Ec~~~  118 (476)
T KOG0376|consen  107 DATRKIDECNKI  118 (476)
T ss_pred             HHHHHHHHHHHH
Confidence            988777766543

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.00016  Score=61.25  Aligned_cols=103  Identities=23%  Similarity=0.293  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---C----------------chHHHHHHHHHHHHhcCHHHHHHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCP---N----------------VPIYWTNRALCHLKRNDWTKVEADCR   72 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~   72 (281)
                      +.++..++.|+..+++++|..|..-|.+++..-.   .                -...+.+.+.+-++.+.+..|+....
T Consensus       220 ~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~  299 (372)
T KOG0546|consen  220 EREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTN  299 (372)
T ss_pred             hhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccc
Confidence            4456677889999999999999999999876521   1                13577788999999999999999999


Q ss_pred             HHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           73 KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        73 ~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .++..++...++|+++++.+..+.++++|++.+..+....|+
T Consensus       300 ~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~  341 (372)
T KOG0546|consen  300 EALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN  341 (372)
T ss_pred             cccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence            999999999999999999999999999999999999988776

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=97.64  E-value=2e-05  Score=69.36  Aligned_cols=59  Identities=17%  Similarity=0.170  Sum_probs=47.1

Q ss_pred             CCCCCCcccccCCcccccCceecCCCcccccchHHhHhcc----CCCCCCCCCCCcCCCCCcc
Q 023501          201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK----VGKFDPITREPLRESQLVP  259 (281)
Q Consensus       201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~----~~~~cP~~~~~~~~~~~~~  259 (281)
                      +.+.-....|.+|.+.-.||+.+.|-|+|||.||.+++..    ++.+||.|-.+++.+.-.|
T Consensus       530 ~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~  592 (791)
T KOG1002|consen  530 PDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP  592 (791)
T ss_pred             CccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence            3444467889999999999999999999999999887643    3457999998887654333

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=0.0071  Score=52.06  Aligned_cols=44  Identities=11%  Similarity=0.139  Sum_probs=37.9

Q ss_pred             CcccccCCcccccC---ceecCCCcccccchHHhHhccCC--CCCCCCC
Q 023501          206 DYLCCKITLDIFRD---PVITPSGVTYERAVILDHLDKVG--KFDPITR  249 (281)
Q Consensus       206 ~~~~c~i~~~~~~~---pv~~~~g~~~~~~~i~~~~~~~~--~~cP~~~  249 (281)
                      +-|.|||..+.-++   |+.++|||+-++..|.+-..++.  ..||-|-
T Consensus       333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP  381 (394)
T KOG2817|consen  333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP  381 (394)
T ss_pred             ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence            45899999988776   99999999999999999988765  4699994

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.62  E-value=0.00095  Score=47.28  Aligned_cols=92  Identities=15%  Similarity=0.198  Sum_probs=78.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHhcC-----------HHHHHHHHHHHHhhcCcchhHH
Q 023501           20 DGNYYFSKDRYGAAIDAYTEAITLCPNVP---IYWTNRALCHLKRND-----------WTKVEADCRKAIQLDHDSVKGH   85 (281)
Q Consensus        20 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~l~p~~~~a~   85 (281)
                      ++..++.+|++-+|++..+..+...+++.   .++...|.++.++..           .-.+++.+.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            57789999999999999999999988866   566667888776653           4568999999999999999999


Q ss_pred             HHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           86 YLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        86 ~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      +.+|.-+.....|++++.-.+++|..
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            99998888888889998888888866

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.62  E-value=0.0054  Score=48.45  Aligned_cols=98  Identities=26%  Similarity=0.266  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH-
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAIT--LCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ-   90 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~-   90 (281)
                      .......+..+...+++..++..+..++.  ..+.....+...+..+...+++..++..+..++..++.........+. 
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG  138 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence            34444555555555555555555555554  445555555555555555555555555555555555544444444444 


Q ss_pred             HHHHhcChHHHHHHHHHHHhh
Q 023501           91 TLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        91 ~~~~~g~~~~A~~~~~kal~~  111 (281)
                      ++...|+++.|...+.+++..
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~  159 (291)
T COG0457         139 ALYELGDYEEALELYEKALEL  159 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhc
Confidence            555555555555555555443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.0043  Score=51.65  Aligned_cols=103  Identities=18%  Similarity=0.192  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHH---------------------
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK---------------------   73 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~---------------------   73 (281)
                      +.....|......|++.+|...|..++...|.+..+...++.||...|+.+.|...+..                     
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~  214 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE  214 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence            44556778899999999999999999999999999999999999999998665544332                     


Q ss_pred             -------------HHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           74 -------------AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        74 -------------al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                                   .+..+|++..+-+.+|..+...|++++|.+.+-..+..+.+..+
T Consensus       215 qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d  271 (304)
T COG3118         215 QAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFED  271 (304)
T ss_pred             HHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence                         22246899999999999999999999999999999888655443

>PF04641 Rtf2: Rtf2 RING-finger

Probab=97.60  E-value=4.7e-05  Score=63.51  Aligned_cols=54  Identities=19%  Similarity=0.426  Sum_probs=43.2

Q ss_pred             CCCcccccCCcccccC--ce--ecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcc
Q 023501          204 VPDYLCCKITLDIFRD--PV--ITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVP  259 (281)
Q Consensus       204 ~p~~~~c~i~~~~~~~--pv--~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~  259 (281)
                      -...|.|||++..|..  +.  +.||||+|+..+|.+.- ... .||+|+.+|...++++
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~-~Cp~c~~~f~~~DiI~  167 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSK-KCPVCGKPFTEEDIIP  167 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccc-cccccCCccccCCEEE
Confidence            3567999999999954  23  47999999999999983 233 5999999999877664

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.60  E-value=0.00063  Score=61.74  Aligned_cols=109  Identities=21%  Similarity=0.276  Sum_probs=86.6

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN----VPIYWTNRALCHLKRNDWTKVEADCRKAIQL   77 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   77 (281)
                      +|+.....-|+.+--+...|..+...|+.++|+..|++++.....    ...++..+|.|+..+.+|++|...+.+.++.
T Consensus       255 lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~  334 (468)
T PF10300_consen  255 LLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE  334 (468)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence            355556666788888899999999999999999999998854333    4578888999999999999999999999886


Q ss_pred             cCcchhH--HHHHHHHHHHhcCh-------HHHHHHHHHHHhh
Q 023501           78 DHDSVKG--HYLLGQTLLQRNEY-------ADGIKELEKALNL  111 (281)
Q Consensus        78 ~p~~~~a--~~~la~~~~~~g~~-------~~A~~~~~kal~~  111 (281)
                      + .|.++  .|..|-++..+|+.       ++|.+.+.++-.+
T Consensus       335 s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  335 S-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             c-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            5 45444  46668888999988       7777777766655

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.60  E-value=0.0061  Score=52.56  Aligned_cols=106  Identities=13%  Similarity=0.142  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC-cchhHHHHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH-DSVKGHYLLGQ   90 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p-~~~~a~~~la~   90 (281)
                      ..+......|..-+..|+|..|.+...++-+-.+.-...|..-|.+--++|+++.|-.++.++-++.+ +.......++.
T Consensus        82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar  161 (400)
T COG3071          82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR  161 (400)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence            45667778899999999999999999998888887778888888899999999999999999999943 34667888999


Q ss_pred             HHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           91 TLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        91 ~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      ++...|++..|.....++++..|.++.
T Consensus       162 lll~~~d~~aA~~~v~~ll~~~pr~~~  188 (400)
T COG3071         162 LLLNRRDYPAARENVDQLLEMTPRHPE  188 (400)
T ss_pred             HHHhCCCchhHHHHHHHHHHhCcCChH
Confidence            999999999999999999999877433

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=7.1e-05  Score=63.72  Aligned_cols=47  Identities=21%  Similarity=0.382  Sum_probs=40.6

Q ss_pred             ccccCCcccccC---ceecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501          208 LCCKITLDIFRD---PVITPSGVTYERAVILDHLDKVGKFDPITREPLRE  254 (281)
Q Consensus       208 ~~c~i~~~~~~~---pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~  254 (281)
                      ..|-||.+-+..   =+++||+|.|=..||..||....++||+|+..+..
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            689999998886   34699999999999999999887679999976543

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=3.6e-05  Score=63.15  Aligned_cols=47  Identities=15%  Similarity=0.242  Sum_probs=38.6

Q ss_pred             ccccCCcccccC---ceecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501          208 LCCKITLDIFRD---PVITPSGVTYERAVILDHLDKVGKFDPITREPLRE  254 (281)
Q Consensus       208 ~~c~i~~~~~~~---pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~  254 (281)
                      ..|.||..-|..   =+++||.|.|-..||..|+-.....||+||.++++
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            679999876653   34699999999999999998555569999998875

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=2.5e-05  Score=72.05  Aligned_cols=46  Identities=20%  Similarity=0.340  Sum_probs=41.1

Q ss_pred             CcccccCCcccccC-----ceecCCCcccccchHHhHhccCCCCCCCCCCCc
Q 023501          206 DYLCCKITLDIFRD-----PVITPSGVTYERAVILDHLDKVGKFDPITREPL  252 (281)
Q Consensus       206 ~~~~c~i~~~~~~~-----pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~  252 (281)
                      .+-.|+||.+.|..     |-.++|||.|+..||..|++... +||.||..+
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~q-tCP~CR~~~  340 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQ-TCPTCRTVL  340 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhC-cCCcchhhh
Confidence            46789999999999     77899999999999999999877 599999844

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.53  E-value=0.00019  Score=39.56  Aligned_cols=33  Identities=27%  Similarity=0.420  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN   46 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   46 (281)
                      ++.+..+|..+...|++++|+.+|.++++++|+
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            467899999999999999999999999999885

...

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.53  E-value=0.0012  Score=56.80  Aligned_cols=119  Identities=14%  Similarity=0.056  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL   93 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~   93 (281)
                      +......+..+...|++++|.+....++...-+.- ++...+  ....+++..=++.+++.++..|+++..++.+|..++
T Consensus       263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~  339 (400)
T COG3071         263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLAL  339 (400)
T ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence            55566677888888999999988888887654422 222222  235677777777777777777777777777777777


Q ss_pred             HhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHH
Q 023501           94 QRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLL  136 (281)
Q Consensus        94 ~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~  136 (281)
                      ..+.|.+|..+|+.+++..|+..+ ......+...+++.....
T Consensus       340 k~~~w~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g~~~~A~  381 (400)
T COG3071         340 KNKLWGKASEALEAALKLRPSASD-YAELADALDQLGEPEEAE  381 (400)
T ss_pred             HhhHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHcCChHHHH
Confidence            777777777777777777655222 223344444444444333

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.51  E-value=0.0095  Score=47.00  Aligned_cols=105  Identities=25%  Similarity=0.290  Sum_probs=76.9

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHH-HHHHhcCHHHHHHHHHHHHhhcC---cchhHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRAL-CHLKRNDWTKVEADCRKAIQLDH---DSVKGH   85 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~al~l~p---~~~~a~   85 (281)
                      .+.....+...|......+++..|+..+.+++...+.+.......+. ++...|+++.|...+.+++..+|   .....+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  170 (291)
T COG0457          91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL  170 (291)
T ss_pred             ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence            34455667777777888888888888888888877766555555555 77788888888888888877766   456666


Q ss_pred             HHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           86 YLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        86 ~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ...+..+...++++.|+..+.+++...+.
T Consensus       171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         171 LALGALLEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             HHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            77777777778888888888888877544

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.51  E-value=0.00055  Score=41.97  Aligned_cols=41  Identities=17%  Similarity=0.276  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501           50 YWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ   90 (281)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~   90 (281)
                      +++.+|..++++|+|++|..+++.+++++|+|..+......
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            56677888888888888888888888888888777654443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.50  E-value=0.00075  Score=56.29  Aligned_cols=61  Identities=20%  Similarity=0.123  Sum_probs=39.7

Q ss_pred             HHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501           58 HLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK  118 (281)
Q Consensus        58 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~  118 (281)
                      ..+.|+.++|...++.|+.++|.++.++..+|+....-++.-+|-++|-+|+.++|.+...
T Consensus       126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA  186 (472)
T KOG3824|consen  126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA  186 (472)
T ss_pred             HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence            4456666666666666666666666666666666666666666666666666666654443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.46  E-value=0.0063  Score=52.09  Aligned_cols=100  Identities=16%  Similarity=0.120  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--c----hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc--------
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN--V----PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD--------   80 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--------   80 (281)
                      .++..+|+++...+-|+.+++.|+.|+.+.-.  |    -.++..+|..+-.+.|+++|+-+..+|..+...        
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            45556788888888888888888888777433  2    357788888888888888888888888776521        


Q ss_pred             --chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           81 --SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        81 --~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                        ..-++|.++.++..+|+...|.++++++.++.-.
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~  238 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ  238 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence              1345677888888888888888888888777543

>PRK10941 hypothetical protein; Provisional

Probab=97.42  E-value=0.0024  Score=53.37  Aligned_cols=80  Identities=9%  Similarity=-0.035  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHH
Q 023501           49 IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQE  128 (281)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~  128 (281)
                      ....|+=.+|...++++.|+...+..+.++|+++.-+.-+|.+|.++|.+..|...++..++.+|+.+.    ...+...
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~----a~~ik~q  257 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI----SEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh----HHHHHHH
Confidence            345566677888888888888888888888888888888888888888888888888888888877444    3344444


Q ss_pred             HHHH
Q 023501          129 LARA  132 (281)
Q Consensus       129 l~~~  132 (281)
                      +...
T Consensus       258 l~~l  261 (269)
T PRK10941        258 IHSI  261 (269)
T ss_pred             HHHH
Confidence            4444

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.009  Score=50.50  Aligned_cols=87  Identities=10%  Similarity=0.017  Sum_probs=68.0

Q ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc----chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchH
Q 023501           47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD----SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIV  122 (281)
Q Consensus        47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~  122 (281)
                      .+..|-.-|+-|++-++|..|+..|.++|+..-.    +...|.++|-+...+|+|..|+..+.+++.++|......+..
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            4566777799999999999999999999987633    567889999999999999999999999999988854443333


Q ss_pred             HHHHHHHHHHH
Q 023501          123 EDIWQELARAK  133 (281)
Q Consensus       123 ~~~~~~l~~~~  133 (281)
                      ....-.|.++.
T Consensus       160 Akc~~eLe~~~  170 (390)
T KOG0551|consen  160 AKCLLELERFA  170 (390)
T ss_pred             hHHHHHHHHHH
Confidence            33333444433

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.41  E-value=0.0033  Score=56.79  Aligned_cols=93  Identities=13%  Similarity=0.091  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL   92 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~   92 (281)
                      ....+..--+.+...++|++|+....+.+...|++..+....-.|+.+++.|++|+.+.++=..+.-.+ ...|..|.|.
T Consensus        11 ~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~   89 (652)
T KOG2376|consen   11 NLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCE   89 (652)
T ss_pred             cHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHH
Confidence            345666777888889999999999999999999988888888888888888888875444332222111 1226778888


Q ss_pred             HHhcChHHHHHHHH
Q 023501           93 LQRNEYADGIKELE  106 (281)
Q Consensus        93 ~~~g~~~~A~~~~~  106 (281)
                      +++++.++|+..+.
T Consensus        90 Yrlnk~Dealk~~~  103 (652)
T KOG2376|consen   90 YRLNKLDEALKTLK  103 (652)
T ss_pred             HHcccHHHHHHHHh
Confidence            88888888888877

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.40  E-value=0.0078  Score=59.89  Aligned_cols=94  Identities=11%  Similarity=0.009  Sum_probs=42.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--cCcchhHHHHHHHHHH
Q 023501           17 LRLDGNYYFSKDRYGAAIDAYTEAITLC-PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL--DHDSVKGHYLLGQTLL   93 (281)
Q Consensus        17 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p~~~~a~~~la~~~~   93 (281)
                      +..+-..|.+.|++++|...|....+.+ +.+...|..+..+|.+.|++++|+..+++..+.  .|+ ...|..+..++.
T Consensus       582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~  660 (1060)
T PLN03218        582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAG  660 (1060)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Confidence            3333344444444444444444444433 223444444444444455555555444444433  122 334444444455


Q ss_pred             HhcChHHHHHHHHHHHhh
Q 023501           94 QRNEYADGIKELEKALNL  111 (281)
Q Consensus        94 ~~g~~~~A~~~~~kal~~  111 (281)
                      ..|++++|.+.+.+..+.
T Consensus       661 k~G~~eeA~~l~~eM~k~  678 (1060)
T PLN03218        661 HAGDLDKAFEILQDARKQ  678 (1060)
T ss_pred             hCCCHHHHHHHHHHHHHc
Confidence            555555555555544443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.00065  Score=54.62  Aligned_cols=61  Identities=10%  Similarity=0.021  Sum_probs=57.3

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           54 RALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        54 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      -|..++....|..|+..|.+||.++|..+..+.+.+.+++++.+|+.+.....++++++|+
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N   76 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN   76 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH
Confidence            4667778889999999999999999999999999999999999999999999999999887

>PRK10941 hypothetical protein; Provisional

Probab=97.39  E-value=0.0025  Score=53.22  Aligned_cols=79  Identities=11%  Similarity=0.028  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL   92 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~   92 (281)
                      .+.+.++=..+.+.++++.|+.+.+..+.+.|+++.-+.-||.+|.++|.+..|..|++..++..|+.+.+-....++.
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            3456677788999999999999999999999999999999999999999999999999999999999998876665543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.38  E-value=0.0035  Score=49.03  Aligned_cols=98  Identities=12%  Similarity=0.018  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc-hhHHHHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS-VKGHYLLGQ   90 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-~~a~~~la~   90 (281)
                      -....++..+...|++++|+..+..++....+.   +.+-..+|.+..++|.+++|+..++....  +.+ +..-...|.
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGD  167 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGD  167 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhh
Confidence            345678899999999999999999998765442   46777889999999999999888765432  222 234567899


Q ss_pred             HHHHhcChHHHHHHHHHHHhhccC
Q 023501           91 TLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        91 ~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ++...|+-++|...|.+++...++
T Consensus       168 ill~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         168 ILLAKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             HHHHcCchHHHHHHHHHHHHccCC
Confidence            999999999999999999998643

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.37  E-value=0.0091  Score=59.43  Aligned_cols=94  Identities=12%  Similarity=0.052  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-CcchhHHHHHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITL--CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-HDSVKGHYLLGQT   91 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~la~~   91 (281)
                      ..|..+...|.+.|++++|+..|.+....  .| +...|..+..+|.+.|++++|...+.+..+.. +.+...|..+..+
T Consensus       615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~a  693 (1060)
T PLN03218        615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA  693 (1060)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            44455555555555555555555554443  22 23444445555555555555555555554433 2234445555555


Q ss_pred             HHHhcChHHHHHHHHHHH
Q 023501           92 LLQRNEYADGIKELEKAL  109 (281)
Q Consensus        92 ~~~~g~~~~A~~~~~kal  109 (281)
                      |...|++++|...|++..
T Consensus       694 y~k~G~~eeA~~lf~eM~  711 (1060)
T PLN03218        694 CSNAKNWKKALELYEDIK  711 (1060)
T ss_pred             HHhCCCHHHHHHHHHHHH
Confidence            555555555555555443

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=5.7e-05  Score=62.72  Aligned_cols=53  Identities=25%  Similarity=0.446  Sum_probs=43.5

Q ss_pred             CCcccccCCcccccCcee-cCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCc
Q 023501          205 PDYLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVGKFDPITREPLRESQLV  258 (281)
Q Consensus       205 p~~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~  258 (281)
                      |+.-.||+|..--.+|.+ +-+|.+||-.||-.++...++ ||+|+.|.+.++++
T Consensus       298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~-CPVT~~p~~v~~l~  351 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGH-CPVTGYPASVDHLI  351 (357)
T ss_pred             CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCC-CCccCCcchHHHHH
Confidence            345679999988888775 568999999999999997775 99999988765443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.36  E-value=0.0014  Score=62.67  Aligned_cols=94  Identities=10%  Similarity=0.006  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHh
Q 023501           16 QLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQR   95 (281)
Q Consensus        16 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~   95 (281)
                      .+..+...+.+.|++++|.+.+.+. ...| +...|..+..++...|+++.|...+++.++++|.+...|..++.+|...
T Consensus       464 ~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~  541 (697)
T PLN03081        464 HYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS  541 (697)
T ss_pred             chHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence            3444556666666666666666542 2223 3445666666666677777777777777777777666777777777777


Q ss_pred             cChHHHHHHHHHHHhh
Q 023501           96 NEYADGIKELEKALNL  111 (281)
Q Consensus        96 g~~~~A~~~~~kal~~  111 (281)
                      |++++|.+.++...+.
T Consensus       542 G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        542 GRQAEAAKVVETLKRK  557 (697)
T ss_pred             CCHHHHHHHHHHHHHc
Confidence            7777777777665544

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.36  E-value=0.0025  Score=61.10  Aligned_cols=97  Identities=8%  Similarity=-0.074  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-CcchhHHHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLC-PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-HDSVKGHYLLG   89 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~la   89 (281)
                      .+...|..+...|.+.|++++|+..|.+..... .-+...|..+..++.+.|++++|...+...++.. +.+...+..+.
T Consensus       288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li  367 (697)
T PLN03081        288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV  367 (697)
T ss_pred             CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence            355667777777788888888888887765432 1134556666666666666666666666666554 33444555555


Q ss_pred             HHHHHhcChHHHHHHHHHH
Q 023501           90 QTLLQRNEYADGIKELEKA  108 (281)
Q Consensus        90 ~~~~~~g~~~~A~~~~~ka  108 (281)
                      ..|.+.|++++|...|++.
T Consensus       368 ~~y~k~G~~~~A~~vf~~m  386 (697)
T PLN03081        368 DLYSKWGRMEDARNVFDRM  386 (697)
T ss_pred             HHHHHCCCHHHHHHHHHhC
Confidence            5555555555555555543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=0.0077  Score=49.40  Aligned_cols=103  Identities=15%  Similarity=0.156  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHH----hhcC--cchhHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLC-PNVPIYWTNRALCHLKRNDWTKVEADCRKAI----QLDH--DSVKGHYL   87 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----~l~p--~~~~a~~~   87 (281)
                      .+.+.+.+.+...|+|.-.+..|.+.+..+ |.++.+...++.+.++.||.+.|..+++++-    +++.  .+.-.+.+
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            345567888899999999999999999998 6789999999999999999999999999543    3442  34567777


Q ss_pred             HHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           88 LGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        88 la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      .+.++.-.+++.+|...+.+++..+|....
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~  287 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAV  287 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccCCCchh
Confidence            888888888999999999999999876433

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.00015  Score=58.78  Aligned_cols=48  Identities=15%  Similarity=0.038  Sum_probs=39.5

Q ss_pred             CcccccCCcccccCcee-cCCCcccccchHHhHhcc-CCCCCCCCCCCcC
Q 023501          206 DYLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDK-VGKFDPITREPLR  253 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~-~~~~cP~~~~~~~  253 (281)
                      ....||+|++.-..|-+ .+|||.||-.||..-... ...+||.|+++..
T Consensus       238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            56889999999999986 569999999999887543 3346999998765

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.31  E-value=0.029  Score=46.17  Aligned_cols=85  Identities=19%  Similarity=0.230  Sum_probs=71.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHH
Q 023501           27 KDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELE  106 (281)
Q Consensus        27 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~  106 (281)
                      .+.+.+|.-+|+..-+..|-.+.+..+.|.|++.+|+|++|...++.|+..++++++++.++-.+-..+|...++..-+.
T Consensus       186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l  265 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL  265 (299)
T ss_pred             chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence            44688888899888877777888999999999999999999999999999999999999999999999998877765555


Q ss_pred             HHHhh
Q 023501          107 KALNL  111 (281)
Q Consensus       107 kal~~  111 (281)
                      .-+..
T Consensus       266 ~QLk~  270 (299)
T KOG3081|consen  266 SQLKL  270 (299)
T ss_pred             HHHHh
Confidence            44433

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.31  E-value=0.023  Score=50.47  Aligned_cols=110  Identities=9%  Similarity=-0.005  Sum_probs=100.5

Q ss_pred             hhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501            5 AGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG   84 (281)
Q Consensus         5 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (281)
                      ..+..+.-+...|...|.--..++++..|...|.+|++.+-.+..+|...+.+-++.+....|...+++|+.+-|.-.+.
T Consensus        64 d~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql  143 (677)
T KOG1915|consen   64 DQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL  143 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH
Confidence            34445556667788888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           85 HYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ||....+-..+|+...|.+.|++=+...|+
T Consensus       144 WyKY~ymEE~LgNi~gaRqiferW~~w~P~  173 (677)
T KOG1915|consen  144 WYKYIYMEEMLGNIAGARQIFERWMEWEPD  173 (677)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHcCCCc
Confidence            999999999999999999999999999877

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.30  E-value=0.041  Score=42.98  Aligned_cols=95  Identities=14%  Similarity=0.063  Sum_probs=79.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh-hcCcchhHHHHHHHHHHHhcCh
Q 023501           20 DGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQ-LDHDSVKGHYLLGQTLLQRNEY   98 (281)
Q Consensus        20 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-l~p~~~~a~~~la~~~~~~g~~   98 (281)
                      .+....+.=|.+.++.-.++.++..|+.. ..+.+|.+...+|++.+|...|.+++. +--.++..+..++++.+..+++
T Consensus        62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~  140 (251)
T COG4700          62 LLMALQQKLDPERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF  140 (251)
T ss_pred             HHHHHHHhcChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence            34555566688888888888888888744 456689999999999999999999975 5567788899999999999999


Q ss_pred             HHHHHHHHHHHhhccCC
Q 023501           99 ADGIKELEKALNLGRGA  115 (281)
Q Consensus        99 ~~A~~~~~kal~~~p~~  115 (281)
                      ..|...+++..+..|..
T Consensus       141 A~a~~tLe~l~e~~pa~  157 (251)
T COG4700         141 AAAQQTLEDLMEYNPAF  157 (251)
T ss_pred             HHHHHHHHHHhhcCCcc
Confidence            99999999999998763

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.30  E-value=0.00038  Score=39.06  Aligned_cols=27  Identities=33%  Similarity=0.455  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           85 HYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        85 ~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      +..+|.+|..+|+|++|+..|++++.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            455666666666666666666665544

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.29  E-value=0.00022  Score=60.09  Aligned_cols=74  Identities=18%  Similarity=0.186  Sum_probs=70.6

Q ss_pred             hhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 023501            5 AGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD   78 (281)
Q Consensus         5 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~   78 (281)
                      .++..+|..+..+..+|.++++.++...||.-|..|+.++|+.+.-|-.++.++..+|+|++|.+++..|++++
T Consensus       139 ~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld  212 (377)
T KOG1308|consen  139 SAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLD  212 (377)
T ss_pred             cccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence            46777888999999999999999999999999999999999999999999999999999999999999999997

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.29  E-value=0.0038  Score=47.19  Aligned_cols=65  Identities=9%  Similarity=0.003  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQ   76 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   76 (281)
                      .....+..++..+...|++++|+..+.+++..+|.+-.+|..+-.+|...|+...|+..|++...
T Consensus        60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   60 LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            44567778888999999999999999999999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.28  E-value=0.0059  Score=51.66  Aligned_cols=99  Identities=10%  Similarity=-0.040  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501           16 QLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLK-RNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ   94 (281)
Q Consensus        16 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~   94 (281)
                      +|....+..-+.+..+.|...|.+|....+....+|...|..-+. .++.+.|...++.+++.-|.+...|..+..-+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            455666677777779999999999997666678999989988666 5677779999999999999999999999999999


Q ss_pred             hcChHHHHHHHHHHHhhccC
Q 023501           95 RNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        95 ~g~~~~A~~~~~kal~~~p~  114 (281)
                      +|+.+.|...|++++..-|.
T Consensus        83 ~~d~~~aR~lfer~i~~l~~  102 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPK  102 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSC
T ss_pred             hCcHHHHHHHHHHHHHhcCc
Confidence            99999999999999987544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.27  E-value=0.0039  Score=56.87  Aligned_cols=97  Identities=16%  Similarity=0.177  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL   88 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (281)
                      ..+.+.|...|+-++|..++++|...+..-|.|      +....+++.||+.+.+.+.|.+++.+|=+.+|.++-..+..
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            456788899999999999999999999887775      57888999999999999999999999999999999999999


Q ss_pred             HHHHHHhcChHHHHHHHHHHHhh
Q 023501           89 GQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        89 a~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      ..+...-|.-++|+....+....
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhh
Confidence            99999999999999988776654

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.25  E-value=0.0002  Score=47.91  Aligned_cols=45  Identities=20%  Similarity=0.253  Sum_probs=32.0

Q ss_pred             ccCCcccccC-cee-cCCCcccccchHHhHhccC--CCCCCCCCCCcCC
Q 023501          210 CKITLDIFRD-PVI-TPSGVTYERAVILDHLDKV--GKFDPITREPLRE  254 (281)
Q Consensus       210 c~i~~~~~~~-pv~-~~~g~~~~~~~i~~~~~~~--~~~cP~~~~~~~~  254 (281)
                      ||.|.-.-.+ |++ -.|+|.|=.-||.+|+...  ...||+||+++..
T Consensus        35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF   83 (85)
T ss_pred             CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence            4444433333 554 5699999999999999853  3369999998653

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.00026  Score=59.42  Aligned_cols=47  Identities=15%  Similarity=0.106  Sum_probs=41.0

Q ss_pred             CcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501          206 DYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLR  253 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~  253 (281)
                      .+-.||||-.=-...|.+||||.-|+.||.+|+.+... |=.|+..+.
T Consensus       421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~-CFfCktTv~  467 (489)
T KOG4692|consen  421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKR-CFFCKTTVI  467 (489)
T ss_pred             ccccCcceecccchhhccCCCCchHHHHHHHHHhcCCe-eeEecceee
Confidence            57789999988888899999999999999999998874 888876654

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.22  E-value=0.0017  Score=54.26  Aligned_cols=82  Identities=13%  Similarity=0.110  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG   89 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la   89 (281)
                      .-+.|......+....+.|+-++|...|..|+.+.|+++.++...|...-..++.-+|-.+|-+|+.++|.+.+|+.+.+
T Consensus       112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            34456666677888899999999999999999999999999999999998889999999999999999999999988876


Q ss_pred             HH
Q 023501           90 QT   91 (281)
Q Consensus        90 ~~   91 (281)
                      ..
T Consensus       192 RT  193 (472)
T KOG3824|consen  192 RT  193 (472)
T ss_pred             cc
Confidence            54

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.22  E-value=0.011  Score=44.90  Aligned_cols=103  Identities=15%  Similarity=0.019  Sum_probs=88.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG   89 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la   89 (281)
                      +......+.+........++..++...+...-.+.|..+.+-..-|..+...|+|.+|+..++.+..-.|.++.+--.++
T Consensus         6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA   85 (160)
T PF09613_consen    6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA   85 (160)
T ss_pred             cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            34566788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcChHHHHHHHHHHHhhcc
Q 023501           90 QTLLQRNEYADGIKELEKALNLGR  113 (281)
Q Consensus        90 ~~~~~~g~~~~A~~~~~kal~~~p  113 (281)
                      .++..+|+.+-=.. -.+++..++
T Consensus        86 ~CL~~~~D~~Wr~~-A~evle~~~  108 (160)
T PF09613_consen   86 LCLYALGDPSWRRY-ADEVLESGA  108 (160)
T ss_pred             HHHHHcCChHHHHH-HHHHHhcCC
Confidence            99999998654322 334555543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.22  E-value=0.008  Score=41.43  Aligned_cols=66  Identities=15%  Similarity=0.007  Sum_probs=38.6

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc--hhHHHHHHHHHHHhcChH
Q 023501           34 IDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS--VKGHYLLGQTLLQRNEYA   99 (281)
Q Consensus        34 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~~~la~~~~~~g~~~   99 (281)
                      +..+++++..+|+|..+.+.+|..+...|++++|++.+-.+++.++.+  ..+.-.+-.++..+|.-+
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            455666667777777777777777777777777777777777776655  444444444455555433

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.00022  Score=60.30  Aligned_cols=46  Identities=24%  Similarity=0.394  Sum_probs=38.5

Q ss_pred             CcccccCCcccccC-------------ceecCCCcccccchHHhHhccCCCCCCCCCCCc
Q 023501          206 DYLCCKITLDIFRD-------------PVITPSGVTYERAVILDHLDKVGKFDPITREPL  252 (281)
Q Consensus       206 ~~~~c~i~~~~~~~-------------pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~  252 (281)
                      ++-.|.||.+=|..             |--+||||.+--.|+..|++..+ +||+||.|+
T Consensus       286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ-TCPICr~p~  344 (491)
T COG5243         286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ-TCPICRRPV  344 (491)
T ss_pred             CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhcc-CCCcccCcc
Confidence            56789999866443             35689999999999999999888 699999985

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.0054  Score=49.72  Aligned_cols=73  Identities=18%  Similarity=0.160  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG   84 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (281)
                      ...-.+.+....++..|+|-+++++....+...|++..+|+.||.++...=+..+|..|+.++++++|.-..+
T Consensus       228 ~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  228 MITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            3445677889999999999999999999999999999999999999999999999999999999999965443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.21  E-value=0.003  Score=52.64  Aligned_cols=86  Identities=15%  Similarity=0.156  Sum_probs=78.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHH
Q 023501           23 YYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGI  102 (281)
Q Consensus        23 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~  102 (281)
                      .+.+..+|.+||++.+.-.+..|.+-..++.+|.||+...+|..|...+++...+.|...+..+..++.+++.+.+.+|+
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            34677899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHH
Q 023501          103 KELEKA  108 (281)
Q Consensus       103 ~~~~ka  108 (281)
                      ......
T Consensus        99 rV~~~~  104 (459)
T KOG4340|consen   99 RVAFLL  104 (459)
T ss_pred             HHHHHh
Confidence            776544

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.00018  Score=57.31  Aligned_cols=36  Identities=42%  Similarity=0.818  Sum_probs=31.3

Q ss_pred             CCcccccCCcccccCceecCCCcccccchHHhHhcc
Q 023501          205 PDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK  240 (281)
Q Consensus       205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~  240 (281)
                      -+.-.|.+|...+++||++|+|+.|||.||.+++-.
T Consensus        41 K~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila   76 (303)
T KOG3039|consen   41 KPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA   76 (303)
T ss_pred             CCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence            334467999999999999999999999999998653

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.20  E-value=0.00054  Score=38.41  Aligned_cols=25  Identities=16%  Similarity=0.145  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHH
Q 023501           51 WTNRALCHLKRNDWTKVEADCRKAI   75 (281)
Q Consensus        51 ~~~~a~~~~~~~~~~~A~~~~~~al   75 (281)
                      |.++|.+|..+|+|++|+..+++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.20  E-value=0.018  Score=56.85  Aligned_cols=102  Identities=15%  Similarity=0.049  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc------c
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV-----PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD------S   81 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~------~   81 (281)
                      .+.....+|..++..|++++|..++.+++...+..     ..+...+|.++...|++++|...+.+++.....      .
T Consensus       451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~  530 (903)
T PRK04841        451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA  530 (903)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence            34555667889999999999999999999865542     246678899999999999999999999876432      1


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ..++..+|.++...|++++|...+.+++.+...
T Consensus       531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~  563 (903)
T PRK04841        531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEE  563 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            346678899999999999999999999987543

>PLN03077 Protein ECB2; Provisional

Probab=97.19  E-value=0.0046  Score=60.67  Aligned_cols=95  Identities=12%  Similarity=0.086  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ   94 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~   94 (281)
                      ..+..+...+.+.|++++|...+++. ...|+ +.+|..+-.++...|+.+.+....+++++++|+++..|..++.+|..
T Consensus       626 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~  703 (857)
T PLN03077        626 KHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD  703 (857)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence            45666777777778888888777663 34454 55566665566667777888777888888888888888888888888


Q ss_pred             hcChHHHHHHHHHHHhh
Q 023501           95 RNEYADGIKELEKALNL  111 (281)
Q Consensus        95 ~g~~~~A~~~~~kal~~  111 (281)
                      .|+|++|.+......+.
T Consensus       704 ~g~~~~a~~vr~~M~~~  720 (857)
T PLN03077        704 AGKWDEVARVRKTMREN  720 (857)
T ss_pred             CCChHHHHHHHHHHHHc
Confidence            88888888777766544

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.17  E-value=0.0085  Score=52.21  Aligned_cols=94  Identities=15%  Similarity=0.261  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-------------c-----hHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN-------------V-----PIYWTNRALCHLKRNDWTKVEADCRKAIQ   76 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------------~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~   76 (281)
                      ++....|..+|++++|..|+.-|..|+++..+             +     +-+-..+..||+.+++.+.|+....+.|-
T Consensus       177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~  256 (569)
T PF15015_consen  177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN  256 (569)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence            34455678889999999999888888877322             1     24566789999999999999999999999


Q ss_pred             hcCcchhHHHHHHHHHHHhcChHHHHHHHHHH
Q 023501           77 LDHDSVKGHYLLGQTLLQRNEYADGIKELEKA  108 (281)
Q Consensus        77 l~p~~~~a~~~la~~~~~~g~~~~A~~~~~ka  108 (281)
                      ++|.+..-|.+.|.++..+.+|.+|...+--+
T Consensus       257 lnP~~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998776544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.13  E-value=0.036  Score=45.44  Aligned_cols=72  Identities=11%  Similarity=0.067  Sum_probs=64.7

Q ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501           47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK  118 (281)
Q Consensus        47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~  118 (281)
                      -+..+++-|...+..|+|++|...++.+....|..   .++...++.+++..+++++|+...++.+.+.|.+.+.
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence            35778888888999999999999999999888754   6899999999999999999999999999999986664

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.12  E-value=0.019  Score=54.42  Aligned_cols=91  Identities=10%  Similarity=0.034  Sum_probs=82.4

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHH
Q 023501           24 YFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIK  103 (281)
Q Consensus        24 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~  103 (281)
                      ....++|..|+...++.+...|+...+....|..+.++|.+++|...++..-...+++...+-.+-.+|..+|++++|..
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            45678999999999999999999998888899999999999999966666666677888899999999999999999999


Q ss_pred             HHHHHHhhccC
Q 023501          104 ELEKALNLGRG  114 (281)
Q Consensus       104 ~~~kal~~~p~  114 (281)
                      .|++++..+|+
T Consensus        99 ~Ye~~~~~~P~  109 (932)
T KOG2053|consen   99 LYERANQKYPS  109 (932)
T ss_pred             HHHHHHhhCCc
Confidence            99999999876

>smart00028 TPR Tetratricopeptide repeats

Probab=97.10  E-value=0.0012  Score=35.02  Aligned_cols=30  Identities=27%  Similarity=0.225  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 023501           50 YWTNRALCHLKRNDWTKVEADCRKAIQLDH   79 (281)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p   79 (281)
                      ++.++|.++..+|+++.|...++++++++|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            445555555555555555555555555554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.07  E-value=0.0013  Score=35.70  Aligned_cols=31  Identities=13%  Similarity=0.293  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           84 GHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +++.+|.++..+|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4455555555555555555555555555443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.04  E-value=0.0015  Score=35.47  Aligned_cols=31  Identities=19%  Similarity=0.164  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc
Q 023501           50 YWTNRALCHLKRNDWTKVEADCRKAIQLDHD   80 (281)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~   80 (281)
                      +++++|.++.++|++++|+..++++++.-|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4555666666666666666666666666554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.01  E-value=0.012  Score=49.86  Aligned_cols=110  Identities=13%  Similarity=-0.010  Sum_probs=86.2

Q ss_pred             hhhhchHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch-
Q 023501            5 AGLAGVAKQAEQLRLDGNYYFS-KDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV-   82 (281)
Q Consensus         5 ~~~~~~~~~a~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-   82 (281)
                      .+.......-.+|...|..-+. .++.+.|...|+.++...|.+..+|......+..+|+.+.|...+++++..-|... 
T Consensus        26 ~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~  105 (280)
T PF05843_consen   26 RARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQ  105 (280)
T ss_dssp             HHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHH
T ss_pred             HHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhH
Confidence            3443333445677777887666 67777799999999999999999999999999999999999999999998876554 


Q ss_pred             --hHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           83 --KGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        83 --~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                        ..|.....--...|+.+.......++.++.|.
T Consensus       106 ~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen  106 SKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence              56777777777889999999999999888665

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.99  E-value=0.0098  Score=56.25  Aligned_cols=109  Identities=10%  Similarity=-0.098  Sum_probs=89.9

Q ss_pred             hhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501            5 AGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG   84 (281)
Q Consensus         5 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (281)
                      ...+..|+..-+....|..+++.|++++|..+++..-...++|-..+..+-.||..+|++++|...|++++..+|. -+.
T Consensus        34 kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eel  112 (932)
T KOG2053|consen   34 KLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EEL  112 (932)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHH
Confidence            3344556666666677899999999999998888877778889999999999999999999999999999999999 888


Q ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           85 HYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .+.+-.+|..-+.|.+--+.--+..+.-|+
T Consensus       113 l~~lFmayvR~~~yk~qQkaa~~LyK~~pk  142 (932)
T KOG2053|consen  113 LYHLFMAYVREKSYKKQQKAALQLYKNFPK  142 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            888889999988887665555555555444

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.97  E-value=0.08  Score=42.85  Aligned_cols=105  Identities=16%  Similarity=0.114  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc-----
Q 023501           14 AEQLRLDGNYYFSK-DRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS-----   81 (281)
Q Consensus        14 a~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-----   81 (281)
                      |..+..+|..|-.. .++++||.+|++|-+....+      ..++...|..-..+++|.+|++.|+++....-++     
T Consensus       113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy  192 (288)
T KOG1586|consen  113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY  192 (288)
T ss_pred             HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence            44556777777655 89999999999998775442      2456666776678899999999999988766443     


Q ss_pred             -hhHH-HHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501           82 -VKGH-YLLGQTLLQRNEYADGIKELEKALNLGRGAKPK  118 (281)
Q Consensus        82 -~~a~-~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~  118 (281)
                       .+.| +..|.+++-..+.-.+...+++...++|...+.
T Consensus       193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS  231 (288)
T ss_pred             HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence             3444 445677777788889999999999999987765

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.96  E-value=0.035  Score=54.86  Aligned_cols=101  Identities=15%  Similarity=0.109  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN---------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---   81 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---   81 (281)
                      +......+..++..|++++|...+..+....+.         ...+...+|.++...|++++|...+++++...|..   
T Consensus       409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~  488 (903)
T PRK04841        409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYY  488 (903)
T ss_pred             cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHH
Confidence            334456788889999999999999988765322         23455667888999999999999999999865432   


Q ss_pred             --hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           82 --VKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        82 --~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                        ..+...+|.++...|++++|...+.+++.....
T Consensus       489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~  523 (903)
T PRK04841        489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQ  523 (903)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence              246678899999999999999999999987554

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.90  E-value=0.0064  Score=55.07  Aligned_cols=91  Identities=15%  Similarity=0.128  Sum_probs=82.0

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHH
Q 023501           25 FSKDRYGAAIDAYTEAITLCPNV-PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIK  103 (281)
Q Consensus        25 ~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~  103 (281)
                      --.|+...|+.++..|+...|.. ..-..++|+.+.+-|-..+|-..+.+++.++..-+-.++.+|.++..+.+.+.|++
T Consensus       618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~  697 (886)
T KOG4507|consen  618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE  697 (886)
T ss_pred             eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence            35688999999999999998864 45678899999999989999999999999998888899999999999999999999


Q ss_pred             HHHHHHhhccCC
Q 023501          104 ELEKALNLGRGA  115 (281)
Q Consensus       104 ~~~kal~~~p~~  115 (281)
                      .|..|++++|+.
T Consensus       698 ~~~~a~~~~~~~  709 (886)
T KOG4507|consen  698 AFRQALKLTTKC  709 (886)
T ss_pred             HHHHHHhcCCCC
Confidence            999999998873

>PLN03077 Protein ECB2; Provisional

Probab=96.89  E-value=0.045  Score=53.87  Aligned_cols=53  Identities=6%  Similarity=0.015  Sum_probs=39.4

Q ss_pred             HHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           56 LCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        56 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                      ..|.+.|++++|...++..    +.+...|..+...|...|+.++|+..|++..+..
T Consensus       532 ~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g  584 (857)
T PLN03077        532 DLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG  584 (857)
T ss_pred             HHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            4555566666666665554    4566778888899999999999999999888753

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.88  E-value=0.064  Score=47.73  Aligned_cols=98  Identities=10%  Similarity=0.098  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL   92 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~   92 (281)
                      .+..|...|....++.+...|.+.+-.||...|.+-. +-..-..-.++++++.+...|++-|+-+|.+-.+|...|..-
T Consensus       403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl-Fk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE  481 (677)
T KOG1915|consen  403 FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL-FKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELE  481 (677)
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH-HHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHH
Confidence            3566777788888999999999999999999998543 333344567889999999999999999999999999999999


Q ss_pred             HHhcChHHHHHHHHHHHhh
Q 023501           93 LQRNEYADGIKELEKALNL  111 (281)
Q Consensus        93 ~~~g~~~~A~~~~~kal~~  111 (281)
                      ..+|+.+.|...|+-|+..
T Consensus       482 ~~LgdtdRaRaifelAi~q  500 (677)
T KOG1915|consen  482 TSLGDTDRARAIFELAISQ  500 (677)
T ss_pred             HHhhhHHHHHHHHHHHhcC
Confidence            9999999999999988876

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.87  E-value=0.029  Score=43.96  Aligned_cols=101  Identities=18%  Similarity=0.176  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc--ch---
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN---VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD--SV---   82 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~---   82 (281)
                      .+....+..+|.-|++.|++++|++.|.++.+...+   -...+.++-.+.+..++|..+.....+|-.+-..  +.   
T Consensus        33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~  112 (177)
T PF10602_consen   33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR  112 (177)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence            445678899999999999999999999998887544   2467777888888999999999999998665432  22   


Q ss_pred             -hHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           83 -KGHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        83 -~a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                       +.....|..++..++|..|...|..+...
T Consensus       113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  113 NRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence             23445577788889999999998876533

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.87  E-value=0.0024  Score=39.13  Aligned_cols=33  Identities=15%  Similarity=0.195  Sum_probs=29.1

Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      +.+|.+|..++.+|+|++|....+.++++.|++
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N   34 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN   34 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence            467999999999999999999999999998883

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=96.84  E-value=0.00044  Score=59.71  Aligned_cols=37  Identities=22%  Similarity=0.400  Sum_probs=32.9

Q ss_pred             CCcccccCCcccccCceecCCCcccccchHHhHhccC
Q 023501          205 PDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKV  241 (281)
Q Consensus       205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~  241 (281)
                      ..++.||||+..+.+|+++||||+.|+.|-...+.+.
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~t   38 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQT   38 (699)
T ss_pred             cccccCceehhhccCceEeecccHHHHHHHHhhcccC
Confidence            4578999999999999999999999999998776554

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=96.84  E-value=0.0004  Score=59.30  Aligned_cols=45  Identities=24%  Similarity=0.341  Sum_probs=38.8

Q ss_pred             cccCCcccccCceecCCCcccccchHHhHhccC-CCCCCCCCCCcC
Q 023501          209 CCKITLDIFRDPVITPSGVTYERAVILDHLDKV-GKFDPITREPLR  253 (281)
Q Consensus       209 ~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~-~~~cP~~~~~~~  253 (281)
                      .|.||-+--+|--+-||||-.|-.||..|-.+. +.+||.||-.+.
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK  416 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK  416 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence            599999999998899999999999999998544 557999996654

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.83  E-value=0.0047  Score=57.61  Aligned_cols=104  Identities=22%  Similarity=0.341  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHh--cCHHHHHHHHHHHHhhcCcchhHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN----VPIYWTNRALCHLKR--NDWTKVEADCRKAIQLDHDSVKGH   85 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~l~p~~~~a~   85 (281)
                      ..+..++..|+..+++++|.+|.-.|..++.+-|.    .+....+.+.|++++  |+|..++..++-|+...|...+++
T Consensus        51 ~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~L  130 (748)
T KOG4151|consen   51 SRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKAL  130 (748)
T ss_pred             HHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHH
Confidence            45667889999999999999999999999999885    457888899888765  589999999999999999999999


Q ss_pred             HHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           86 YLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        86 ~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      +..+.+|..+++++-|+..+.-.....|.+
T Consensus       131 l~r~~~y~al~k~d~a~rdl~i~~~~~p~~  160 (748)
T KOG4151|consen  131 LKRARKYEALNKLDLAVRDLRIVEKMDPSN  160 (748)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            999999999999999999977777777764

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.78  E-value=0.0022  Score=51.36  Aligned_cols=57  Identities=19%  Similarity=0.312  Sum_probs=31.4

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501           25 FSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus        25 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      .+.++.+.|.+.|.+++++.|.+...|..+|....+.|+++.|.+.+++.++++|.+
T Consensus         6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            444555555555555555555555555555555555555555555555555555543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.75  E-value=0.015  Score=49.33  Aligned_cols=97  Identities=11%  Similarity=0.075  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCch---HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL-CPNVP---IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHY   86 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~   86 (281)
                      |...-+++.--..+|..|+...-...+.+.+-. +|+.|   .+.--.|-++...|-|++|.+..++|++++|.+.-+..
T Consensus       134 PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~H  213 (491)
T KOG2610|consen  134 PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASH  213 (491)
T ss_pred             chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHH
Confidence            333333333344444444444444444444433 33332   22223455666777777777777777777777777777


Q ss_pred             HHHHHHHHhcChHHHHHHHHH
Q 023501           87 LLGQTLLQRNEYADGIKELEK  107 (281)
Q Consensus        87 ~la~~~~~~g~~~~A~~~~~k  107 (281)
                      .++.++...|++.++.+...+
T Consensus       214 a~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  214 AKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             HHHHHHHhcchhhhHHHHHHh
Confidence            777777777777777665543

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.73  E-value=0.0029  Score=56.02  Aligned_cols=101  Identities=16%  Similarity=0.116  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhCCC--------chHHHHHHHHHHHHhcCHHHHHHHHHHHHh------
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEA-ITLCPN--------VPIYWTNRALCHLKRNDWTKVEADCRKAIQ------   76 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------   76 (281)
                      +.+..+...++.+|-.|+|..|++.+... +...|.        ...+|.|+|-+++++|.|.-+..+|.+|++      
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence            45677888899999999999999987543 343444        456789999999999999999999999996      


Q ss_pred             ---hcC---------cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           77 ---LDH---------DSVKGHYLLGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        77 ---l~p---------~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                         +.|         ...+..|+.|..|.+.|++-.|.++|.++...-
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf  365 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF  365 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence               112         356789999999999999999999999998773

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.73  E-value=0.073  Score=48.48  Aligned_cols=87  Identities=9%  Similarity=0.099  Sum_probs=76.8

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc----hhHHHHHHHHHHHhcChHHH
Q 023501           26 SKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS----VKGHYLLGQTLLQRNEYADG  101 (281)
Q Consensus        26 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----~~a~~~la~~~~~~g~~~~A  101 (281)
                      ...+.+.|...+.......|+.+..+...|..+...|+.++|+..+++++.....+    .-.++.+|.++..+++|++|
T Consensus       245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            34567889999999999999999999999999999999999999999999655443    34678899999999999999


Q ss_pred             HHHHHHHHhhc
Q 023501          102 IKELEKALNLG  112 (281)
Q Consensus       102 ~~~~~kal~~~  112 (281)
                      ...+.+..+.+
T Consensus       325 ~~~f~~L~~~s  335 (468)
T PF10300_consen  325 AEYFLRLLKES  335 (468)
T ss_pred             HHHHHHHHhcc
Confidence            99999998873

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.67  E-value=0.025  Score=38.97  Aligned_cols=52  Identities=19%  Similarity=0.336  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501           67 VEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK  118 (281)
Q Consensus        67 A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~  118 (281)
                      .+..+++++..+|++..+.+.+|..+...|++++|++.+..++..+++..+.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~   58 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDD   58 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccccc
Confidence            4567889999999999999999999999999999999999999998876554

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=0.0012  Score=53.07  Aligned_cols=52  Identities=8%  Similarity=0.135  Sum_probs=42.7

Q ss_pred             CCcccccCCcccccC----ceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcc
Q 023501          205 PDYLCCKITLDIFRD----PVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVP  259 (281)
Q Consensus       205 p~~~~c~i~~~~~~~----pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~  259 (281)
                      -..|+|||++-.|..    -++.+|||+|.-..+.+.-   ...|++|+.++..+++++
T Consensus       109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIv  164 (293)
T KOG3113|consen  109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIV  164 (293)
T ss_pred             cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEe
Confidence            457999999999987    4568999999999998875   336999999999876443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.61  E-value=0.038  Score=44.70  Aligned_cols=89  Identities=15%  Similarity=0.131  Sum_probs=68.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHh----CCC---chHHHHHHHHHHHHhcC-------HHHHHHHHHHHHhhcC------cchh
Q 023501           24 YFSKDRYGAAIDAYTEAITL----CPN---VPIYWTNRALCHLKRND-------WTKVEADCRKAIQLDH------DSVK   83 (281)
Q Consensus        24 ~~~~~~~~~A~~~~~~al~~----~p~---~~~~~~~~a~~~~~~~~-------~~~A~~~~~~al~l~p------~~~~   83 (281)
                      +-....+++|+..|.-|+-.    ...   -+.++..+|.+|-.+|+       +..|+..|.+|++...      +...
T Consensus        87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~  166 (214)
T PF09986_consen   87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT  166 (214)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence            34455778999999888754    112   36788888999998888       5567777777776553      2357


Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           84 GHYLLGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                      ..|.+|.+...+|++++|..+|.+++...
T Consensus       167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  167 LLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            88999999999999999999999999873

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.59  E-value=0.021  Score=50.99  Aligned_cols=57  Identities=21%  Similarity=0.141  Sum_probs=33.3

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhcCc--chhHHHHHHHHHHHhcChHHHHHHHHHH
Q 023501           52 TNRALCHLKRNDWTKVEADCRKAIQLDHD--SVKGHYLLGQTLLQRNEYADGIKELEKA  108 (281)
Q Consensus        52 ~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~la~~~~~~g~~~~A~~~~~ka  108 (281)
                      ..+|+|..++|+.++|++.++..++..|.  +...++++..++..++.|.++...+.+.
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            34556666666666666666666655543  3445566666666666666665555554

The molecular function of this protein is uncertain.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.59  E-value=0.3  Score=39.95  Aligned_cols=99  Identities=14%  Similarity=0.083  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-----Ccchh
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLD-----HDSVK   83 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-----p~~~~   83 (281)
                      ..+..-+..+-..++|++|...+.+|++...++      +..|-..+.....+..|.++...+++|..+-     |+...
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA  111 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA  111 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence            344445556667889999999999998654443      4667777888888999999999999998874     33333


Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501           84 GHYLLGQTLLQRNEYADGIKELEKALNLGR  113 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p  113 (281)
                      .-...+--.....++++|++.|++++.+-.
T Consensus       112 maleKAak~lenv~Pd~AlqlYqralavve  141 (308)
T KOG1585|consen  112 MALEKAAKALENVKPDDALQLYQRALAVVE  141 (308)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence            233333334556679999999999998843

>smart00028 TPR Tetratricopeptide repeats

Probab=96.56  E-value=0.0041  Score=32.72  Aligned_cols=32  Identities=38%  Similarity=0.565  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN   46 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   46 (281)
                      ..+..+|..++..+++++|+..|++++..+|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            46788999999999999999999999998885

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.55  E-value=0.037  Score=36.62  Aligned_cols=66  Identities=12%  Similarity=0.148  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH---HHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPI---YWTNRALCHLKRNDWTKVEADCRKAIQL   77 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~al~l   77 (281)
                      ..+....+.|..+|.+++.++|+..+++++...++...   ++-.+..+|...|+|.+++++...=+.+
T Consensus         4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777889999999999999999999999998877554   5555667888899999988877665544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.54  E-value=0.064  Score=40.24  Aligned_cols=90  Identities=13%  Similarity=0.007  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ   90 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~   90 (281)
                      ......+.+.........+..++...+...-.+.|+.+.+-..-|..+...|+|.+|+..++....-.+..+-+.-.++.
T Consensus         7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~   86 (153)
T TIGR02561         7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL   86 (153)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence            34456677777777889999999999999989999999999999999999999999999999999999999988899999


Q ss_pred             HHHHhcChHH
Q 023501           91 TLLQRNEYAD  100 (281)
Q Consensus        91 ~~~~~g~~~~  100 (281)
                      ++..+|+.+-
T Consensus        87 CL~al~Dp~W   96 (153)
T TIGR02561        87 CLNAKGDAEW   96 (153)
T ss_pred             HHHhcCChHH
Confidence            9999998653

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.51  E-value=0.34  Score=39.34  Aligned_cols=103  Identities=22%  Similarity=0.239  Sum_probs=76.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----C-chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc--
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCP-----N-VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS--   81 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--   81 (281)
                      -.+.++.+..-|+.|-..+++..|=..|-+|-+..-     + -+..|.--+.||.+. +.++|+..+++++++--+-  
T Consensus        30 ~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Gr  108 (288)
T KOG1586|consen   30 YEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGR  108 (288)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhH
Confidence            345566777778888888888888888888765521     1 356777777777554 9999999999999886432  


Q ss_pred             ----hhHHHHHHHHHHHh-cChHHHHHHHHHHHhhcc
Q 023501           82 ----VKGHYLLGQTLLQR-NEYADGIKELEKALNLGR  113 (281)
Q Consensus        82 ----~~a~~~la~~~~~~-g~~~~A~~~~~kal~~~p  113 (281)
                          .+.+..+|++|..- .++++|+.+|+++-+.-.
T Consensus       109 f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk  145 (288)
T KOG1586|consen  109 FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK  145 (288)
T ss_pred             HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence                44566888888775 889999999998877643

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]

Probab=96.44  E-value=0.003  Score=51.13  Aligned_cols=63  Identities=19%  Similarity=0.236  Sum_probs=47.2

Q ss_pred             cccccCCcccccCcee-cCCCcccccchHHhHhccC-CCCCCCCCCC----cCCCCCcccHHHHHHHHH
Q 023501          207 YLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKV-GKFDPITREP----LRESQLVPNLAIKEAVRA  269 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~-~~~cP~~~~~----~~~~~~~~n~~l~~~i~~  269 (281)
                      .+.||++.....+||+ ..|||.|.|+.|...+... ...||+-+.+    +....+.+...+..-|++
T Consensus       176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr~  244 (262)
T KOG2979|consen  176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIRQ  244 (262)
T ss_pred             cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHHH
Confidence            4779999999999998 5699999999999999763 2359998765    223356666556555543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.44  E-value=0.069  Score=50.50  Aligned_cols=63  Identities=16%  Similarity=0.137  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHhcCcCCCCCCCCcccccCCcccccCcee-cCCCcccccchHHhHhccCCCCCCCCCC
Q 023501          181 HLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVGKFDPITRE  250 (281)
Q Consensus       181 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~  250 (281)
                      +.+.++...+.++......++.+   .-.|..|.-.+.-|++ -.|||+|=+.|++   + +...||.|.-
T Consensus       817 yk~~i~e~r~~l~~lr~sa~i~q---~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~-~~~~CP~C~~  880 (933)
T KOG2114|consen  817 YKKDIEEKRQELETLRTSAQIFQ---VSKCSACEGTLDLPFVHFLCGHSYHQHCLE---D-KEDKCPKCLP  880 (933)
T ss_pred             HHHHHHHHHHHHHHhhcccceee---eeeecccCCccccceeeeecccHHHHHhhc---c-CcccCCccch
Confidence            34444444444444433344433   3579999999999987 6899999999999   3 3335999975

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.40  E-value=0.0063  Score=48.84  Aligned_cols=58  Identities=17%  Similarity=0.231  Sum_probs=54.6

Q ss_pred             HHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           57 CHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        57 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ...+-++.+.|.+.+.+|+.+.|.|...|+++|......|+++.|...|++.++++|.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~   61 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE   61 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence            3456789999999999999999999999999999999999999999999999999986

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.0028  Score=54.17  Aligned_cols=52  Identities=33%  Similarity=0.585  Sum_probs=46.6

Q ss_pred             cccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcc
Q 023501          207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVP  259 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~  259 (281)
                      ...|.+++..|.+||.+.+|..|+-..|..||...+ +-|++|+++...+|++
T Consensus        40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~g-~nP~tG~kl~~~dLIk   91 (518)
T KOG0883|consen   40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKHG-TNPITGQKLDGKDLIK   91 (518)
T ss_pred             hhhceeccccccCcccccCCcEEeeehhhHHHHHcC-CCCCCCCcccccccee
Confidence            456899999999999999999999999999999877 4899999988877766

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.31  E-value=0.16  Score=46.48  Aligned_cols=111  Identities=15%  Similarity=0.079  Sum_probs=90.2

Q ss_pred             hhhchHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            6 GLAGVAKQAEQLRLDGNYY-FSKDRYGAAIDAYTEAITLCPNV--PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      +.+..+.+...+ .++..| -.+|+..+|..+|..|+-..|..  ..++..+|.++..+|-..+|--.+..|+.-.|...
T Consensus       205 glq~~~~sw~lH-~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t  283 (886)
T KOG4507|consen  205 GLQKNTSSWVLH-NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFT  283 (886)
T ss_pred             hhhcCchhHHHH-HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcccc
Confidence            334344444444 444444 47899999999999999988764  36788899999999999999888888888888888


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      .-+|-+|.++..+|.+...+..|..+.+.+|....
T Consensus       284 ~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q  318 (886)
T KOG4507|consen  284 SNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ  318 (886)
T ss_pred             ccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence            88999999999999999999999999999887433

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.30  E-value=0.00069  Score=40.66  Aligned_cols=45  Identities=24%  Similarity=0.278  Sum_probs=35.9

Q ss_pred             cccCCcccccCceecCCCcc-cccchHHhHhccCCCCCCCCCCCcC
Q 023501          209 CCKITLDIFRDPVITPSGVT-YERAVILDHLDKVGKFDPITREPLR  253 (281)
Q Consensus       209 ~c~i~~~~~~~pv~~~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~~  253 (281)
                      .|.||.+--.|-|+-.|||. .|-.|=.+.++.....||+||.|+.
T Consensus         9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            48899887777778889985 7899988888755546999998764

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.23  E-value=0.11  Score=46.57  Aligned_cols=93  Identities=16%  Similarity=0.052  Sum_probs=71.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC--------------c-----
Q 023501           20 DGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH--------------D-----   80 (281)
Q Consensus        20 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--------------~-----   80 (281)
                      .-....+..+++.-++.-.+|++++|+-+.+|..+|.=  ......+|...+++|++...              .     
T Consensus       174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~  251 (539)
T PF04184_consen  174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH  251 (539)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh
Confidence            34667889999999999999999999999999888752  12235566666666655321              0     


Q ss_pred             ------chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           81 ------SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        81 ------~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                            .+.+..++|.+..++|+.++|++.+...++..|.
T Consensus       252 ~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~  291 (539)
T PF04184_consen  252 RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN  291 (539)
T ss_pred             ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc
Confidence                  1445678999999999999999999999988664

The molecular function of this protein is uncertain.

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.20  E-value=0.0028  Score=54.37  Aligned_cols=49  Identities=14%  Similarity=0.188  Sum_probs=38.5

Q ss_pred             CCcccccCCcccccCce-----e---cCCCcccccchHHhHhccCC------CCCCCCCCCcC
Q 023501          205 PDYLCCKITLDIFRDPV-----I---TPSGVTYERAVILDHLDKVG------KFDPITREPLR  253 (281)
Q Consensus       205 p~~~~c~i~~~~~~~pv-----~---~~~g~~~~~~~i~~~~~~~~------~~cP~~~~~~~  253 (281)
                      -.+..|.||++...+++     .   .+|.|+||..||..|-....      ..||.||.+..
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            45788999999888877     3   56999999999999973222      25999997754

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=96.11  E-value=0.001  Score=62.49  Aligned_cols=47  Identities=21%  Similarity=0.335  Sum_probs=39.7

Q ss_pred             ccccCCcccccCceecCCCcccccchHHhHhccCCC-CCCCCCCCcCCC
Q 023501          208 LCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGK-FDPITREPLRES  255 (281)
Q Consensus       208 ~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~-~cP~~~~~~~~~  255 (281)
                      +.|++|.+ ...||+++|||.||..|+...++.... .||.|+..+...
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~  502 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK  502 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence            78999999 888999999999999999999875432 499999776543

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=0.0034  Score=51.68  Aligned_cols=45  Identities=18%  Similarity=0.140  Sum_probs=35.5

Q ss_pred             cccCCc-ccccCce----ecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501          209 CCKITL-DIFRDPV----ITPSGVTYERAVILDHLDKVGKFDPITREPLR  253 (281)
Q Consensus       209 ~c~i~~-~~~~~pv----~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~  253 (281)
                      .||.|. ....+|-    +.+|||+.|.+|.-.-+..++..||.|+..+.
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR   51 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR   51 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence            378875 4445554    25899999999999999888777999998765

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.11  E-value=0.18  Score=50.56  Aligned_cols=99  Identities=12%  Similarity=-0.003  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc--chhHHHHHHHHHH
Q 023501           16 QLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD--SVKGHYLLGQTLL   93 (281)
Q Consensus        16 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~la~~~~   93 (281)
                      ++..+...|-+.+.+++|.++|+..+.........|...|..++..++-+.|...+.+|++--|.  +.+..-.-|++-+
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence            34455666666777777777777777777766777777777777777777777777777777776  6666666777777


Q ss_pred             HhcChHHHHHHHHHHHhhccC
Q 023501           94 QRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        94 ~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +.|+.+.+...|+-.+...|.
T Consensus      1612 k~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred             hcCCchhhHHHHHHHHhhCcc
Confidence            777777777777777777666

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.08  E-value=0.061  Score=44.53  Aligned_cols=69  Identities=12%  Similarity=0.062  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           49 IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      ....++=..+...++++.|..+..+.+.++|.++.-+.-.|.+|.++|-+.-|++.+...++.+|+.+.
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~  250 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI  250 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence            455566667888899999999999999999999999999999999999999999999999999988443

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=96.08  E-value=0.0054  Score=37.31  Aligned_cols=46  Identities=11%  Similarity=0.068  Sum_probs=33.4

Q ss_pred             ccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCC
Q 023501          208 LCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQ  256 (281)
Q Consensus       208 ~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~  256 (281)
                      ..|-.|...-...+++||||..|+.|.--+  .-. .||+|+.++...+
T Consensus         8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--rYn-gCPfC~~~~~~~~   53 (55)
T PF14447_consen    8 QPCVFCGFVGTKGTVLPCGHLICDNCFPGE--RYN-GCPFCGTPFEFDD   53 (55)
T ss_pred             eeEEEccccccccccccccceeeccccChh--hcc-CCCCCCCcccCCC
Confidence            345566666677889999999999994322  112 3999999998654

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.07  E-value=0.7  Score=39.82  Aligned_cols=49  Identities=29%  Similarity=0.470  Sum_probs=41.7

Q ss_pred             cccccCCcccccC---ceecCCCcccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501          207 YLCCKITLDIFRD---PVITPSGVTYERAVILDHLDKVGKFDPITREPLRES  255 (281)
Q Consensus       207 ~~~c~i~~~~~~~---pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~  255 (281)
                      .+.|.|+++.|-+   |++.|+|++|....|+.|-...+..||.++..|...
T Consensus       330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~  381 (389)
T KOG0396|consen  330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYS  381 (389)
T ss_pred             HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHH
Confidence            4678888888876   999999999999999999877766799999887653

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.04  E-value=0.0068  Score=51.72  Aligned_cols=63  Identities=21%  Similarity=0.283  Sum_probs=51.2

Q ss_pred             ccccCCcccccC------ceecCCCcccccchHHhHhccCCCCCCCCCCC--cC---CCCCcccHHHHHHHHHH
Q 023501          208 LCCKITLDIFRD------PVITPSGVTYERAVILDHLDKVGKFDPITREP--LR---ESQLVPNLAIKEAVRAY  270 (281)
Q Consensus       208 ~~c~i~~~~~~~------pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~--~~---~~~~~~n~~l~~~i~~~  270 (281)
                      ..|-||.+-++.      |-++.|||++|..|+...+..+...||.||.+  +.   ...+..|+.+-+.++..
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            457777766664      77778999999999999998777679999998  33   34788999999998875

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=96.02  E-value=0.0022  Score=55.83  Aligned_cols=42  Identities=12%  Similarity=0.251  Sum_probs=34.8

Q ss_pred             cccCCcccccCce----ecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501          209 CCKITLDIFRDPV----ITPSGVTYERAVILDHLDKVGKFDPITREPLR  253 (281)
Q Consensus       209 ~c~i~~~~~~~pv----~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~  253 (281)
                      +||+|.+-|-+-|    ++.|.|+|--+|+..|+.  . +||+||--.+
T Consensus       177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~-scpvcR~~q~  222 (493)
T KOG0804|consen  177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--S-SCPVCRYCQS  222 (493)
T ss_pred             CcchhHhhcCccccceeeeecccccchHHHhhccc--C-cChhhhhhcC
Confidence            5999999998755    467999999999999985  3 4999986544

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.95  E-value=0.55  Score=41.17  Aligned_cols=101  Identities=14%  Similarity=0.005  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHH---hcCHHHHHHHHHHH-HhhcCcchhHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITL----CPNVPIYWTNRALCHLK---RNDWTKVEADCRKA-IQLDHDSVKGH   85 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~a-l~l~p~~~~a~   85 (281)
                      ++...++-..|-..++|+.-+...+..-..    -++.+.+-...|.++-+   .|+.++|+..+..+ ....+.+++.+
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            445556666778888898888888775444    33456677778888888   89999999999995 45567889999


Q ss_pred             HHHHHHHHHh---------cChHHHHHHHHHHHhhccC
Q 023501           86 YLLGQTLLQR---------NEYADGIKELEKALNLGRG  114 (281)
Q Consensus        86 ~~la~~~~~~---------g~~~~A~~~~~kal~~~p~  114 (281)
                      -.+|.+|-.+         ...++|+.+|.+++.+.|+
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~  258 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD  258 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence            9999998654         2478999999999999754

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.94  E-value=0.019  Score=32.81  Aligned_cols=28  Identities=11%  Similarity=0.052  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501           50 YWTNRALCHLKRNDWTKVEADCRKAIQL   77 (281)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l   77 (281)
                      ++.++|.+|..+|++++|+..+++++.+
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            4445555555555555555555555443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.92  E-value=0.31  Score=43.77  Aligned_cols=86  Identities=8%  Similarity=0.026  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcC-hHHHHHHHHHHHh
Q 023501           32 AAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNE-YADGIKELEKALN  110 (281)
Q Consensus        32 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~-~~~A~~~~~kal~  110 (281)
                      .-+..|+.|....+.|..+|.+...-..+-+.+.+.-..|.+++...|+++..|...|.=.+..+. .+.|...+.++|.
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR  168 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR  168 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence            445779999999999999999988777777779999999999999999999999999998888876 8899999999999


Q ss_pred             hccCCCC
Q 023501          111 LGRGAKP  117 (281)
Q Consensus       111 ~~p~~~~  117 (281)
                      .+|+++.
T Consensus       169 ~npdsp~  175 (568)
T KOG2396|consen  169 FNPDSPK  175 (568)
T ss_pred             cCCCChH
Confidence            9888444

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.90  E-value=0.38  Score=48.32  Aligned_cols=106  Identities=9%  Similarity=0.050  Sum_probs=96.9

Q ss_pred             hhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501            6 GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN--VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK   83 (281)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (281)
                      ....-......|...|..++++++-++|...+.+|+..-|.  ...+-..-|+.-++.|+.+.+...++-.+.-.|.-..
T Consensus      1556 m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtD 1635 (1710)
T KOG1070|consen 1556 MLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTD 1635 (1710)
T ss_pred             HHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchh
Confidence            33333355678899999999999999999999999999998  7788889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           84 GHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      .|.-+...-+..|+.+.+...|++++.+
T Consensus      1636 lW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1636 LWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999988

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=95.88  E-value=0.0061  Score=39.80  Aligned_cols=44  Identities=20%  Similarity=0.302  Sum_probs=32.6

Q ss_pred             cccCCcccccC----cee-cCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501          209 CCKITLDIFRD----PVI-TPSGVTYERAVILDHLDKVGKFDPITREPLR  253 (281)
Q Consensus       209 ~c~i~~~~~~~----pv~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~  253 (281)
                      .||-|..-|..    ||. --|.|.|=--||.+||...+ .||++++++.
T Consensus        33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~-~CPld~q~w~   81 (88)
T COG5194          33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKG-VCPLDRQTWV   81 (88)
T ss_pred             cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCC-CCCCCCceeE
Confidence            35555543322    565 34999999999999999876 4999998864

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.83  E-value=0.075  Score=44.02  Aligned_cols=77  Identities=14%  Similarity=0.083  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT   91 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~   91 (281)
                      +...++=..+...++++.|..+-.+.+.++|.++.-..-+|.+|.++|.+.-|+.++...+..-|+.+.+-...+..
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            33445556778999999999999999999999999999999999999999999999999999999988876655554

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.82  E-value=0.0046  Score=53.21  Aligned_cols=61  Identities=20%  Similarity=0.250  Sum_probs=45.7

Q ss_pred             cccccCCcccccCce-----ecCCCcccccchHHhHhccCC-CCCCCCCCCcCCCCCcccHHHHHHH
Q 023501          207 YLCCKITLDIFRDPV-----ITPSGVTYERAVILDHLDKVG-KFDPITREPLRESQLVPNLAIKEAV  267 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv-----~~~~g~~~~~~~i~~~~~~~~-~~cP~~~~~~~~~~~~~n~~l~~~i  267 (281)
                      ..+||||.+-..-|+     .+.|||-|..+||+.|+-+.. ..||.|...-...++.+-..++...
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa   70 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA   70 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence            467999987666554     467999999999999995321 2499998877777777776665544

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.80  E-value=0.47  Score=39.84  Aligned_cols=45  Identities=16%  Similarity=0.219  Sum_probs=36.4

Q ss_pred             CcccccCCcccccC---ceecCCCcccccchHHhHhccCCC--CCCCCCC
Q 023501          206 DYLCCKITLDIFRD---PVITPSGVTYERAVILDHLDKVGK--FDPITRE  250 (281)
Q Consensus       206 ~~~~c~i~~~~~~~---pv~~~~g~~~~~~~i~~~~~~~~~--~cP~~~~  250 (281)
                      +-|+||+..+.-.+   ||++.|||...+..+.+.-+.+..  .||.|-.
T Consensus       335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~  384 (396)
T COG5109         335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE  384 (396)
T ss_pred             ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence            45899999887775   999999999999999887765432  4999943

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.79  E-value=0.12  Score=44.06  Aligned_cols=98  Identities=14%  Similarity=0.104  Sum_probs=83.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-cCcc---hhHHHHHHHHH
Q 023501           17 LRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL-DHDS---VKGHYLLGQTL   92 (281)
Q Consensus        17 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-~p~~---~~a~~~la~~~   92 (281)
                      ....+-..+.+|++.+|...+++.++-.|+|-.++..--.+++-+|+-......+++++-. +|+-   ...+-.++..+
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL  185 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL  185 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence            3445666788999999999999999999999888887778889999999999999998866 5544   56666778889


Q ss_pred             HHhcChHHHHHHHHHHHhhccC
Q 023501           93 LQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        93 ~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ...|-|++|.+...++++++|.
T Consensus       186 ~E~g~y~dAEk~A~ralqiN~~  207 (491)
T KOG2610|consen  186 EECGIYDDAEKQADRALQINRF  207 (491)
T ss_pred             HHhccchhHHHHHHhhccCCCc
Confidence            9999999999999999999765

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.74  E-value=0.0039  Score=54.90  Aligned_cols=34  Identities=26%  Similarity=0.498  Sum_probs=28.6

Q ss_pred             eecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501          221 VITPSGVTYERAVILDHLDKVGKFDPITREPLRE  254 (281)
Q Consensus       221 v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~  254 (281)
                      .+|||.|.|-+.|+++|.+.-.-.||+||.++.+
T Consensus       602 m~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  602 MLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             cccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            3579999999999999998544359999999864

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.72  E-value=0.0063  Score=52.02  Aligned_cols=51  Identities=20%  Similarity=0.239  Sum_probs=35.7

Q ss_pred             CCcccccCCcccccC----ceecCCCcccccchHHhHhccCCC--CCCCCCCCcCCC
Q 023501          205 PDYLCCKITLDIFRD----PVITPSGVTYERAVILDHLDKVGK--FDPITREPLRES  255 (281)
Q Consensus       205 p~~~~c~i~~~~~~~----pv~~~~g~~~~~~~i~~~~~~~~~--~cP~~~~~~~~~  255 (281)
                      |-.-.|.||.+.+-.    .-+..|||+|--.|+.+|+...+.  .||+|+-.+...
T Consensus         2 pi~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r   58 (465)
T KOG0827|consen    2 PIMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQER   58 (465)
T ss_pred             CccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccce
Confidence            445579999443322    113459999999999999987654  699999555443

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.69  E-value=0.0032  Score=51.13  Aligned_cols=63  Identities=11%  Similarity=0.086  Sum_probs=46.2

Q ss_pred             cCCCCCCCCcccccCCcccccCce----------ecCCCcccccchHHhHhcc-CCCCCCCCCCCcCCCCCccc
Q 023501          198 DDTPAEVPDYLCCKITLDIFRDPV----------ITPSGVTYERAVILDHLDK-VGKFDPITREPLRESQLVPN  260 (281)
Q Consensus       198 ~~~~~~~p~~~~c~i~~~~~~~pv----------~~~~g~~~~~~~i~~~~~~-~~~~cP~~~~~~~~~~~~~n  260 (281)
                      ++.|..--++-.|.+|+.-+..-|          .+.|+|+|-..||.-|.-- ...+||-|++.+....+..|
T Consensus       215 ~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn  288 (328)
T KOG1734|consen  215 SGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN  288 (328)
T ss_pred             CCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence            444555556778999987776544          4689999999999999653 33479999988775555544

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.65  E-value=0.078  Score=36.79  Aligned_cols=35  Identities=20%  Similarity=0.281  Sum_probs=22.8

Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      .+...+|.+....|++++|+..+++++++.....+
T Consensus        42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D   76 (94)
T PF12862_consen   42 YALLNLAELHRRFGHYEEALQALEEAIRLARENGD   76 (94)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence            45566667777777777777777777776555333

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.62  E-value=0.0057  Score=51.98  Aligned_cols=50  Identities=26%  Similarity=0.340  Sum_probs=38.2

Q ss_pred             CCCCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501          200 TPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLR  253 (281)
Q Consensus       200 ~~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~  253 (281)
                      .+.+.|..-.|-||.+-..+-+..||||+.|  |+.-.. +.+ .||+||+.+.
T Consensus       298 ~~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~-~l~-~CPvCR~rI~  347 (355)
T KOG1571|consen  298 TFRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK-HLP-QCPVCRQRIR  347 (355)
T ss_pred             cccccCCCCceEEecCCccceeeecCCcEEE--chHHHh-hCC-CCchhHHHHH
Confidence            3566677888999999999999999999988  544332 233 3999998654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.61  E-value=0.035  Score=31.62  Aligned_cols=30  Identities=30%  Similarity=0.433  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITL   43 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   43 (281)
                      +..+..+|..+...|+|++|+.++.+++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            567889999999999999999999999886

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.45  E-value=0.33  Score=35.87  Aligned_cols=68  Identities=12%  Similarity=0.092  Sum_probs=51.3

Q ss_pred             hHHHHHHHHHHHHhc---CHHHHHHHHHHHHh-hcCc-chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           48 PIYWTNRALCHLKRN---DWTKVEADCRKAIQ-LDHD-SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        48 ~~~~~~~a~~~~~~~---~~~~A~~~~~~al~-l~p~-~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      ....+++|.++....   +..+.+..++..++ -.|. .-+..|.+|..++.+++|+.++.+.+..++..|++
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n  104 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN  104 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence            456677777776555   45667778888886 3343 35678889999999999999999999999887763

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.45  E-value=0.28  Score=42.58  Aligned_cols=105  Identities=15%  Similarity=0.109  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--c-----
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCP----NVPIYWTNRALCHLKRNDWTKVEADCRKAIQL--D-----   78 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~-----   78 (281)
                      ....+..+...+..+.+.|.++.|...+.++...++    ..+.+....+..+...|+-.+|+..++..++.  .     
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            345566666667777777777777777666666541    14666666666666666666666666665550  0     


Q ss_pred             ---------------------------CcchhHHHHHHHHHHHh------cChHHHHHHHHHHHhhccC
Q 023501           79 ---------------------------HDSVKGHYLLGQTLLQR------NEYADGIKELEKALNLGRG  114 (281)
Q Consensus        79 ---------------------------p~~~~a~~~la~~~~~~------g~~~~A~~~~~kal~~~p~  114 (281)
                                                 ....++++.+|.-...+      +..++++..|.+++.++|.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  290 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS  290 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence                                       01245666666666666      6666667777777666654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.36  E-value=0.09  Score=36.48  Aligned_cols=59  Identities=17%  Similarity=0.189  Sum_probs=48.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCC---------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc
Q 023501           22 NYYFSKDRYGAAIDAYTEAITLCPN---------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD   80 (281)
Q Consensus        22 ~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~   80 (281)
                      ....+.|+|.+|++.+.+.++....         ...+..++|.++...|++++|+..+++|+++...
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            3467889999999988888877432         1467788999999999999999999999998754

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.32  E-value=0.031  Score=49.78  Aligned_cols=80  Identities=15%  Similarity=0.010  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh---------CCC---------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501           16 QLRLDGNYYFSKDRYGAAIDAYTEAITL---------CPN---------VPIYWTNRALCHLKRNDWTKVEADCRKAIQL   77 (281)
Q Consensus        16 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---------~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   77 (281)
                      .+.++|.++|+.+.|.-++.+|.+|++.         .|.         .-.+.+|.|..|+..|+.-.|.+.+.+++..
T Consensus       285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v  364 (696)
T KOG2471|consen  285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV  364 (696)
T ss_pred             eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence            3578999999999999999999999962         111         4578999999999999999999999999999


Q ss_pred             cCcchhHHHHHHHHHHHh
Q 023501           78 DHDSVKGHYLLGQTLLQR   95 (281)
Q Consensus        78 ~p~~~~a~~~la~~~~~~   95 (281)
                      --.+|..|.++|++.+..
T Consensus       365 fh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  365 FHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HhcCcHHHHHHHHHHHHH
Confidence            999999999999987654

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.24  E-value=0.015  Score=34.49  Aligned_cols=43  Identities=26%  Similarity=0.306  Sum_probs=20.4

Q ss_pred             ccCCccccc--Cceec--CCCcccccchHHhHhccCCCCCCCCCCCc
Q 023501          210 CKITLDIFR--DPVIT--PSGVTYERAVILDHLDKVGKFDPITREPL  252 (281)
Q Consensus       210 c~i~~~~~~--~pv~~--~~g~~~~~~~i~~~~~~~~~~cP~~~~~~  252 (281)
                      ||+|.+.|.  +--+.  +||...|+.|..+.+......||-||++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            577776662  11123  49999999999999875444699999875

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.24  E-value=0.045  Score=30.90  Aligned_cols=28  Identities=32%  Similarity=0.529  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           84 GHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      .|..+|.+-...++|++|+..|.+++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3444455555555555555555555444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=95.20  E-value=0.16  Score=37.04  Aligned_cols=51  Identities=16%  Similarity=0.283  Sum_probs=41.1

Q ss_pred             CCcccccCCcccccCceec-C---CCcccccchHHhHhccCC--CCCCCCCCCcCCC
Q 023501          205 PDYLCCKITLDIFRDPVIT-P---SGVTYERAVILDHLDKVG--KFDPITREPLRES  255 (281)
Q Consensus       205 p~~~~c~i~~~~~~~pv~~-~---~g~~~~~~~i~~~~~~~~--~~cP~~~~~~~~~  255 (281)
                      |.-+.|.||.+.-.++-.+ |   ||.+.|-.|-..-|....  ..||+|+..|...
T Consensus        78 ~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss  134 (140)
T PF05290_consen   78 PKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS  134 (140)
T ss_pred             CCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence            3678899999999998754 3   999999999999887532  2599999988653

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=95.12  E-value=0.0035  Score=58.22  Aligned_cols=48  Identities=13%  Similarity=0.055  Sum_probs=38.0

Q ss_pred             CcccccCCcccccCcee---cCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501          206 DYLCCKITLDIFRDPVI---TPSGVTYERAVILDHLDKVGKFDPITREPLRE  254 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv~---~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~  254 (281)
                      ..-.||+|..-+.|-.+   .+|+|-||..||..|-+... +||+|+..|..
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aq-TCPiDR~EF~~  172 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQ-TCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcc-cCchhhhhhhe
Confidence            34568888877776553   35999999999999988777 59999988764

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.12  E-value=0.4  Score=39.69  Aligned_cols=67  Identities=15%  Similarity=-0.041  Sum_probs=54.1

Q ss_pred             hHHHHHHHHHHHHh----cCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           48 PIYWTNRALCHLKR----NDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        48 ~~~~~~~a~~~~~~----~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      -..+.-+|.+|.++    +.+.+|.-.|++.-..-|..+..+.-.+.+.+.+|+|++|...++.++.-+++
T Consensus       169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~  239 (299)
T KOG3081|consen  169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK  239 (299)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence            34555566666544    36888888888888877777888899999999999999999999999988665

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.12  E-value=0.018  Score=34.83  Aligned_cols=44  Identities=20%  Similarity=0.336  Sum_probs=22.5

Q ss_pred             ccccCCcccccCcee-cCCCcc--cccchHHhHhccCC-CCCCCCCCC
Q 023501          208 LCCKITLDIFRDPVI-TPSGVT--YERAVILDHLDKVG-KFDPITREP  251 (281)
Q Consensus       208 ~~c~i~~~~~~~pv~-~~~g~~--~~~~~i~~~~~~~~-~~cP~~~~~  251 (281)
                      +.|||+...|.-||- ..|.|.  |+-..........+ -.||+|+++
T Consensus         3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            679999999999996 557776  44433333333222 259999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.11  E-value=0.42  Score=35.32  Aligned_cols=75  Identities=8%  Similarity=-0.008  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHhcC---CHHHHHHHHHHHHH-hCCC-chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501           14 AEQLRLDGNYYFSKD---RYGAAIDAYTEAIT-LCPN-VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL   88 (281)
Q Consensus        14 a~~~~~~g~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (281)
                      .+..++++..+....   +-++.|..++..+. -.|. .-.+.+.+|..++++++|+.++.+++..++.+|+|..+.-..
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            345667777777655   45678999999886 4454 346777788889999999999999999999999998876543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.10  E-value=1.6  Score=39.02  Aligned_cols=93  Identities=13%  Similarity=0.102  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCc---------------------------------------------
Q 023501           14 AEQLRLDGNYYFSKDR-YGAAIDAYTEAITLCPNV---------------------------------------------   47 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~---------------------------------------------   47 (281)
                      +..+..-|..++..|. -++|+..+..++...|.|                                             
T Consensus       379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~  458 (549)
T PF07079_consen  379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS  458 (549)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence            4455666777777776 556666666666554443                                             


Q ss_pred             -hHHHHHH--HHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHH
Q 023501           48 -PIYWTNR--ALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEK  107 (281)
Q Consensus        48 -~~~~~~~--a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~k  107 (281)
                       ..+-+.+  |.-++..|+|.++.-+..=..+++| ++.++..+|.+++...+|++|...+.+
T Consensus       459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence             2333333  3345678999999999998999999 899999999999999999999988764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.10  E-value=0.47  Score=41.47  Aligned_cols=97  Identities=7%  Similarity=-0.007  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV-PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL   92 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~   92 (281)
                      +-++...++..+-.|+|++|.+.|+..++ +|.. -.-+..+-.--..+|+.+.|.++.+.|-...|.-+-+....-...
T Consensus       120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r  198 (531)
T COG3898         120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR  198 (531)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence            44566778889999999999999988665 3431 112222222234789999999999999999999999998888999


Q ss_pred             HHhcChHHHHHHHHHHHhh
Q 023501           93 LQRNEYADGIKELEKALNL  111 (281)
Q Consensus        93 ~~~g~~~~A~~~~~kal~~  111 (281)
                      ...|+|+.|++..+.....
T Consensus       199 ~~~gdWd~AlkLvd~~~~~  217 (531)
T COG3898         199 CAAGDWDGALKLVDAQRAA  217 (531)
T ss_pred             HhcCChHHHHHHHHHHHHH
Confidence            9999999999998866543

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.98  E-value=2.1  Score=36.93  Aligned_cols=111  Identities=11%  Similarity=-0.118  Sum_probs=83.2

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHH
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKD------------RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD   70 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~   70 (281)
                      +.+.+..+|.+.+.|..+....-..-            -.+.-+..|++|++.+|++..++..+-.+..+..+-+...+-
T Consensus         8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~   87 (321)
T PF08424_consen    8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK   87 (321)
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            44566778888888876664432221            145678899999999999999999888888888899999999


Q ss_pred             HHHHHhhcCcchhHHHHHHHHHHH---hcChHHHHHHHHHHHhhcc
Q 023501           71 CRKAIQLDHDSVKGHYLLGQTLLQ---RNEYADGIKELEKALNLGR  113 (281)
Q Consensus        71 ~~~al~l~p~~~~a~~~la~~~~~---~g~~~~A~~~~~kal~~~p  113 (281)
                      .++++..+|.++..|..+-.....   .-.+......|.+++..-.
T Consensus        88 we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~  133 (321)
T PF08424_consen   88 WEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALS  133 (321)
T ss_pred             HHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence            999999999988777555433322   3357788888888886643

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.94  E-value=0.062  Score=30.35  Aligned_cols=30  Identities=13%  Similarity=0.215  Sum_probs=27.0

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501           48 PIYWTNRALCHLKRNDWTKVEADCRKAIQL   77 (281)
Q Consensus        48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   77 (281)
                      +.+|..+|.+-+..++|++|+.++.+++++
T Consensus         1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    1 ADVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             CcHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            357889999999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.81  E-value=0.014  Score=49.62  Aligned_cols=48  Identities=25%  Similarity=0.261  Sum_probs=38.5

Q ss_pred             CcccccCCcccccCceecCCCcc-cccchHHhHhccCCCCCCCCCCCcCC
Q 023501          206 DYLCCKITLDIFRDPVITPSGVT-YERAVILDHLDKVGKFDPITREPLRE  254 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv~~~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~~~  254 (281)
                      ..-.|-||..--+|=+++||.|. .|..|-...--+.. .||+||+++..
T Consensus       289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n-~CPICRqpi~~  337 (349)
T KOG4265|consen  289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTN-NCPICRQPIEE  337 (349)
T ss_pred             CCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhc-CCCccccchHh
Confidence            35679999999999999999986 79999876643333 39999999864

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.79  E-value=0.12  Score=39.52  Aligned_cols=99  Identities=17%  Similarity=0.137  Sum_probs=71.3

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      +|+......|+.++.-.-.|..+..+|+|.+|+..++...+..|..+.+--.+|.|++.+|+.. =..+..++++..+ +
T Consensus        32 lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~-Wr~~A~evle~~~-d  109 (160)
T PF09613_consen   32 LLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS-WRRYADEVLESGA-D  109 (160)
T ss_pred             HHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH-HHHHHHHHHhcCC-C
Confidence            3444455678888888999999999999999999999999999999999999999999999843 1234566666664 3


Q ss_pred             hhHHHHHHHHHHHhcChHHHHH
Q 023501           82 VKGHYLLGQTLLQRNEYADGIK  103 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~  103 (281)
                      +.+.. +...+....+...|..
T Consensus       110 ~~a~~-Lv~~Ll~~~~~~~a~~  130 (160)
T PF09613_consen  110 PDARA-LVRALLARADLEPAHE  130 (160)
T ss_pred             hHHHH-HHHHHHHhccccchhh
Confidence            33332 3344444444444443

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=94.76  E-value=0.029  Score=33.78  Aligned_cols=40  Identities=23%  Similarity=0.406  Sum_probs=29.2

Q ss_pred             ccCCcc--cccCceecCCC-----cccccchHHhHhccCC-CCCCCCC
Q 023501          210 CKITLD--IFRDPVITPSG-----VTYERAVILDHLDKVG-KFDPITR  249 (281)
Q Consensus       210 c~i~~~--~~~~pv~~~~g-----~~~~~~~i~~~~~~~~-~~cP~~~  249 (281)
                      |-||..  --.+|.++||.     +-+=++||.+|+.... ..||+|+
T Consensus         2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            667765  34458888874     5688899999997553 3599985

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.61  E-value=2.7  Score=36.96  Aligned_cols=97  Identities=18%  Similarity=0.159  Sum_probs=69.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHh---CCC-----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501           17 LRLDGNYYFSKDRYGAAIDAYTEAITL---CPN-----VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL   88 (281)
Q Consensus        17 ~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (281)
                      ....-......|+++.|++..+.....   .++     .+.++...+.... .-+...|..+..+++++.|+...+-..-
T Consensus       191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~A  269 (531)
T COG3898         191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVA  269 (531)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHH
Confidence            333344556777777777777665433   222     1233333333222 2357788888899999999999999999


Q ss_pred             HHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           89 GQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        89 a~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +.+++..|+..++-..++.+.+..|.
T Consensus       270 Aralf~d~~~rKg~~ilE~aWK~ePH  295 (531)
T COG3898         270 ARALFRDGNLRKGSKILETAWKAEPH  295 (531)
T ss_pred             HHHHHhccchhhhhhHHHHHHhcCCC
Confidence            99999999999999999999999776

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.54  E-value=0.6  Score=42.79  Aligned_cols=96  Identities=19%  Similarity=-0.050  Sum_probs=79.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHH-HHHHHhhcCcchhHHHHH------HHHH
Q 023501           20 DGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD-CRKAIQLDHDSVKGHYLL------GQTL   92 (281)
Q Consensus        20 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~-~~~al~l~p~~~~a~~~l------a~~~   92 (281)
                      +...+...++...|.-....++..+|.++.++.+++.+....|..-.+... ...+....|.+..+...+      |..+
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  152 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL  152 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence            456666778888889999999999999999999999988777766555555 455899999988877776      8888


Q ss_pred             HHhcChHHHHHHHHHHHhhccCC
Q 023501           93 LQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        93 ~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      ..+|+..++....+++..+.|..
T Consensus       153 ~~l~~~~~~~~~l~~~~d~~p~~  175 (620)
T COG3914         153 KLLGRTAEAELALERAVDLLPKY  175 (620)
T ss_pred             HHhccHHHHHHHHHHHHHhhhhh
Confidence            88999999999999999998875

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.45  E-value=2.5  Score=36.53  Aligned_cols=80  Identities=11%  Similarity=-0.051  Sum_probs=68.5

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHHhcC------------HHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHH
Q 023501           35 DAYTEAITLCPNVPIYWTNRALCHLKRND------------WTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGI  102 (281)
Q Consensus        35 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~  102 (281)
                      .-|++.+..+|.|..+|..+....-.+-.            .+..+..+++|++.+|++...+..+-.......+.++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45788899999999999988876554432            567788999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccC
Q 023501          103 KELEKALNLGRG  114 (281)
Q Consensus       103 ~~~~kal~~~p~  114 (281)
                      +-+++++...|+
T Consensus        86 ~~we~~l~~~~~   97 (321)
T PF08424_consen   86 KKWEELLFKNPG   97 (321)
T ss_pred             HHHHHHHHHCCC
Confidence            999999999776

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.33  E-value=0.02  Score=46.22  Aligned_cols=49  Identities=16%  Similarity=0.295  Sum_probs=34.2

Q ss_pred             cccCCcccc-cCce-ecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCccc
Q 023501          209 CCKITLDIF-RDPV-ITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPN  260 (281)
Q Consensus       209 ~c~i~~~~~-~~pv-~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n  260 (281)
                      .|.-|+.-- .+|- +|.|+|.||..|.....-   ..||+|+.++....+.+|
T Consensus         5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir~i~l~~s   55 (233)
T KOG4739|consen    5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIRIIQLNRS   55 (233)
T ss_pred             EeccccccCCCCceeeeechhhhhhhhcccCCc---cccccccceeeeeecccc
Confidence            355554222 4455 689999999999776542   159999999877666666

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.27  E-value=1.1  Score=36.34  Aligned_cols=72  Identities=11%  Similarity=-0.045  Sum_probs=55.3

Q ss_pred             chHHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRY-------GAAIDAYTEAITLCPN------VPIYWTNRALCHLKRNDWTKVEADCRKAI   75 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~-------~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al   75 (281)
                      .+...|..+..+|..|-..|+-       ..|+..|.+|+.....      ...+.+.+|..+.++|++++|..++.+++
T Consensus       113 ~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi  192 (214)
T PF09986_consen  113 KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI  192 (214)
T ss_pred             CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3456777788888888777774       4577777777665432      35788889999999999999999999999


Q ss_pred             hhcCc
Q 023501           76 QLDHD   80 (281)
Q Consensus        76 ~l~p~   80 (281)
                      ...-.
T Consensus       193 ~~~~~  197 (214)
T PF09986_consen  193 GSKKA  197 (214)
T ss_pred             cCCCC
Confidence            87543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.26  E-value=2.9  Score=35.27  Aligned_cols=102  Identities=14%  Similarity=-0.006  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHh----CCC----------chHHHHHHHHHHHHhcCHHH---HHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKD-RYGAAIDAYTEAITL----CPN----------VPIYWTNRALCHLKRNDWTK---VEADCR   72 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~----~p~----------~~~~~~~~a~~~~~~~~~~~---A~~~~~   72 (281)
                      ..-+..+++.|...+.++ +|++|+.++++|+++    .+.          ...++..++.+|+..+.++.   |....+
T Consensus        32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~  111 (278)
T PF08631_consen   32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR  111 (278)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            345778899999999999 999999999999988    222          24678889999998887654   444444


Q ss_pred             HHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           73 KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        73 ~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                      .+-.--|+.+..++..-.++...++.+++.+.+.+.+...
T Consensus       112 ~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen  112 LLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             HHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence            4444457777777666666777888999999999888764

It is also involved in sporulation [].

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=94.18  E-value=0.6  Score=41.92  Aligned_cols=93  Identities=9%  Similarity=-0.007  Sum_probs=65.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc-----------------chhH
Q 023501           22 NYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD-----------------SVKG   84 (281)
Q Consensus        22 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-----------------~~~a   84 (281)
                      ...+..|+...|-.....++...|.++..-..++.+...+|+|+.|..++.-+=++-..                 +-.+
T Consensus       297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence            45567788888888888889999999988888899999999999988876554332211                 1111


Q ss_pred             H-----------------HHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           85 H-----------------YLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        85 ~-----------------~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +                 ...|...-++|-+++|...+.+.+.++|.
T Consensus       377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~  423 (831)
T PRK15180        377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE  423 (831)
T ss_pred             HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence            1                 11122234456678888888888888765

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.15  E-value=0.22  Score=27.73  Aligned_cols=30  Identities=23%  Similarity=0.242  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHH--HHHHHHhCC
Q 023501           16 QLRLDGNYYFSKDRYGAAIDA--YTEAITLCP   45 (281)
Q Consensus        16 ~~~~~g~~~~~~~~~~~A~~~--~~~al~~~p   45 (281)
                      .++..|-.++.+|+|++|+..  |.-+..+++
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            345556666666666666666  335544444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=94.11  E-value=4.5  Score=37.92  Aligned_cols=103  Identities=15%  Similarity=0.123  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------------------chHHHHHHHHHHHHhcCHHHHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN------------------VPIYWTNRALCHLKRNDWTKVEADCR   72 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~~~~a~~~~~~~~~~~A~~~~~   72 (281)
                      .+-+.+|-+-|..-++.++++.|+...+.|...-..                  +..+|+..+...-..|-++.....|+
T Consensus       422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd  501 (835)
T KOG2047|consen  422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD  501 (835)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            456778888888888888888888888888765221                  23566666666667778888888888


Q ss_pred             HHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501           73 KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGR  113 (281)
Q Consensus        73 ~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p  113 (281)
                      +.|.+.--.|..-.+.|..+.....+++|.+.|++.+.+-+
T Consensus       502 riidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk  542 (835)
T KOG2047|consen  502 RIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK  542 (835)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence            88888888888888888888888888999999999888843

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.07  E-value=0.018  Score=52.56  Aligned_cols=64  Identities=17%  Similarity=0.136  Sum_probs=43.1

Q ss_pred             CCCCcccccCCccccc----CceecCCCcccccchHHhHhccCCCCCCCCCCCc--CCCCCcccHHHHHHH
Q 023501          203 EVPDYLCCKITLDIFR----DPVITPSGVTYERAVILDHLDKVGKFDPITREPL--RESQLVPNLAIKEAV  267 (281)
Q Consensus       203 ~~p~~~~c~i~~~~~~----~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~--~~~~~~~n~~l~~~i  267 (281)
                      ++-..+.|+||...|.    .||.+-||||.|+.|++......- .||......  +.+++..|++|-+.+
T Consensus         7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~sc-p~~~De~~~~~~~~e~p~n~alL~~~   76 (861)
T KOG3161|consen    7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNASC-PTKRDEDSSLMQLKEEPRNYALLRRE   76 (861)
T ss_pred             hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhccC-CCCccccchhcChhhcchhHHHHHhh
Confidence            3445678999987776    499999999999999998774322 134443332  344666677665544

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.04  E-value=3.6  Score=35.54  Aligned_cols=32  Identities=13%  Similarity=-0.064  Sum_probs=17.4

Q ss_pred             cCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501           62 NDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL   93 (281)
Q Consensus        62 ~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~   93 (281)
                      ++.++++..|.+|++++|.+.++|+.+|..+.
T Consensus       272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~  303 (352)
T PF02259_consen  272 ESSDEILKYYKEATKLDPSWEKAWHSWALFND  303 (352)
T ss_pred             ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence            44455555555555555555555555555433

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.02  E-value=0.4  Score=40.25  Aligned_cols=64  Identities=14%  Similarity=0.028  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           48 PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      ..++..++..+...|+++.++..+++.+.++|.+-.+|..+-.+|...|+...|+..|.+.-++
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            5677888899999999999999999999999999999999999999999999999999987664

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=93.91  E-value=0.48  Score=34.23  Aligned_cols=67  Identities=12%  Similarity=-0.037  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCc----hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL-------CPNV----PIYWTNRALCHLKRNDWTKVEADCRKAIQL   77 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   77 (281)
                      --.+-.+..++..+...|+|++++..-..++..       +.+.    ..+-+++|.++-.+|..++|+..++.+.++
T Consensus        52 GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   52 GFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            345667788899999999999988877777754       4443    456678999999999999999999998765

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=93.88  E-value=2.5  Score=40.76  Aligned_cols=96  Identities=11%  Similarity=0.077  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH----------HhCCC----------chHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023501           16 QLRLDGNYYFSKDRYGAAIDAYTEAI----------TLCPN----------VPIYWTNRALCHLKRNDWTKVEADCRKAI   75 (281)
Q Consensus        16 ~~~~~g~~~~~~~~~~~A~~~~~~al----------~~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~al   75 (281)
                      .+++.+..+-.++|.+.|+++|+++-          .-+|.          +..+|..-|.-+-..|+.+.|+..|..|-
T Consensus       860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~  939 (1416)
T KOG3617|consen  860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK  939 (1416)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            46777778888889999999998752          22333          56788888888888999999999888763


Q ss_pred             h---------------------hcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           76 Q---------------------LDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        76 ~---------------------l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      .                     ....+..|.|.+|..|...|++.+|+..|.+|...
T Consensus       940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            3                     12456778999999999999999999888776544

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.81  E-value=0.3  Score=40.93  Aligned_cols=61  Identities=18%  Similarity=0.060  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHH
Q 023501           49 IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKAL  109 (281)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal  109 (281)
                      .++...+..|...|.+.+|+..++++++++|-+...+..+-.++..+|+--.+++.|++.-
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            3445567889999999999999999999999999999999999999999888888877653

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.76  E-value=2  Score=33.61  Aligned_cols=66  Identities=14%  Similarity=-0.006  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc---chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           49 IYWTNRALCHLKRNDWTKVEADCRKAIQLDHD---SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ..+..+|.-|.+.|+++.|++.|.++....-.   -...++.+-.+.+..|+|......+.++-.+...
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~  105 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK  105 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence            57778999999999999999999998776532   3567788888899999999999999999877433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=93.68  E-value=0.026  Score=36.83  Aligned_cols=48  Identities=17%  Similarity=0.236  Sum_probs=23.4

Q ss_pred             cccccCCccccc-C---cee----cCCCcccccchHHhHhccC--C--------CCCCCCCCCcCC
Q 023501          207 YLCCKITLDIFR-D---PVI----TPSGVTYERAVILDHLDKV--G--------KFDPITREPLRE  254 (281)
Q Consensus       207 ~~~c~i~~~~~~-~---pv~----~~~g~~~~~~~i~~~~~~~--~--------~~cP~~~~~~~~  254 (281)
                      ...|+||..... +   |++    ..|+.+|=..||.+|+...  .        ..||.|+.+++-
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            356999997655 2   543    2589999999999998641  1        149999998763

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.65  E-value=0.11  Score=26.49  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHhcChHHHHHHH
Q 023501           84 GHYLLGQTLLQRNEYADGIKEL  105 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~~~~  105 (281)
                      +++.+|.++..+|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            4455566666666666655554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=93.64  E-value=0.28  Score=27.34  Aligned_cols=31  Identities=13%  Similarity=0.067  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHhcCHHHHHHH--HHHHHhhcCc
Q 023501           50 YWTNRALCHLKRNDWTKVEAD--CRKAIQLDHD   80 (281)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~--~~~al~l~p~   80 (281)
                      .+..+|..+...|++++|++.  +.-+..+++.
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            344555555566666666666  3355555543

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=93.63  E-value=0.54  Score=33.26  Aligned_cols=36  Identities=14%  Similarity=0.249  Sum_probs=28.5

Q ss_pred             CCCCCCCcccccCCcccccCce--ecCCCcccccchHH
Q 023501          200 TPAEVPDYLCCKITLDIFRDPV--ITPSGVTYERAVIL  235 (281)
Q Consensus       200 ~~~~~p~~~~c~i~~~~~~~pv--~~~~g~~~~~~~i~  235 (281)
                      ....+...-.|++|+..+..++  +.||||.|-..|+.
T Consensus        71 ~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   71 RSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             ceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence            3445566777999998888766  47999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=93.62  E-value=1.8  Score=36.60  Aligned_cols=97  Identities=23%  Similarity=0.141  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHhc-------CHHHHHHHHHHHHhhcCc
Q 023501           13 QAEQLRLDGNYYFS----KDRYGAAIDAYTEAITLCPNV-PIYWTNRALCHLKRN-------DWTKVEADCRKAIQLDHD   80 (281)
Q Consensus        13 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~-------~~~~A~~~~~~al~l~p~   80 (281)
                      .+.....+|..+..    ..++.+|..+|.+|....-.. ......++.+|..-.       +...|...+.++....  
T Consensus       108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--  185 (292)
T COG0790         108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--  185 (292)
T ss_pred             cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--
Confidence            34556667777776    458888888888887765443 344667777776541       2336888888877775  


Q ss_pred             chhHHHHHHHHHHH----hcChHHHHHHHHHHHhh
Q 023501           81 SVKGHYLLGQTLLQ----RNEYADGIKELEKALNL  111 (281)
Q Consensus        81 ~~~a~~~la~~~~~----~g~~~~A~~~~~kal~~  111 (281)
                      ++.+.+.+|.+|..    ..++.+|..+|.++-+.
T Consensus       186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~  220 (292)
T COG0790         186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ  220 (292)
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence            67788888877755    23778888888888777

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.60  E-value=2  Score=36.17  Aligned_cols=104  Identities=10%  Similarity=-0.071  Sum_probs=76.8

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHH----------------------------------HHHhCCCch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTE----------------------------------AITLCPNVP   48 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~----------------------------------al~~~p~~~   48 (281)
                      +..+....++++++...++..+...|+.+.|...+..                                  .+..+|+|.
T Consensus       157 ~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~  236 (304)
T COG3118         157 LKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDV  236 (304)
T ss_pred             HHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCH
Confidence            4456666777788888888999999998766555533                                  123388899


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc--chhHHHHHHHHHHHhcChHHHHHHHH
Q 023501           49 IYWTNRALCHLKRNDWTKVEADCRKAIQLDHD--SVKGHYLLGQTLLQRNEYADGIKELE  106 (281)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~la~~~~~~g~~~~A~~~~~  106 (281)
                      .+-+.+|..+...|+++.|++.+-..++.|-.  +..+...+-.++...|.-+.+...++
T Consensus       237 ~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R  296 (304)
T COG3118         237 EAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR  296 (304)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            99999999999999999999999888888754  45566666677777765444444443

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.57  E-value=0.021  Score=54.46  Aligned_cols=50  Identities=12%  Similarity=0.258  Sum_probs=37.2

Q ss_pred             CCCcccccCCccccc--C---cee--cCCCcccccchHHhHhccCC-CCCCCCCCCcC
Q 023501          204 VPDYLCCKITLDIFR--D---PVI--TPSGVTYERAVILDHLDKVG-KFDPITREPLR  253 (281)
Q Consensus       204 ~p~~~~c~i~~~~~~--~---pv~--~~~g~~~~~~~i~~~~~~~~-~~cP~~~~~~~  253 (281)
                      ....-.|+||-.++.  |   |--  ..|.|.|--+||..|+.+++ ..||+||..++
T Consensus      1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            334456999988877  2   442  34779999999999998654 36999997765

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=93.47  E-value=0.49  Score=39.65  Aligned_cols=62  Identities=15%  Similarity=0.029  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501           33 AIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ   94 (281)
Q Consensus        33 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~   94 (281)
                      |+.+|.+|+.+.|++...|+.+|..+...|+.=.|+-+|-+++-....++.|.-++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999997776678888888888777

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.46  E-value=3  Score=40.23  Aligned_cols=38  Identities=16%  Similarity=0.347  Sum_probs=27.9

Q ss_pred             CCCCCcccccCCcc-cccCce-ecCCCcccccchHHhHhc
Q 023501          202 AEVPDYLCCKITLD-IFRDPV-ITPSGVTYERAVILDHLD  239 (281)
Q Consensus       202 ~~~p~~~~c~i~~~-~~~~pv-~~~~g~~~~~~~i~~~~~  239 (281)
                      +.+.+.=.|.+|.. ++..|- +-||||.|=+.||+++..
T Consensus       812 ~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~  851 (911)
T KOG2034|consen  812 RVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL  851 (911)
T ss_pred             EEecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence            33444557899974 444576 589999999999999854

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=93.44  E-value=0.56  Score=42.18  Aligned_cols=82  Identities=16%  Similarity=0.142  Sum_probs=66.6

Q ss_pred             hhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC-HHHHHHHHHHHHhhcCcchhH
Q 023501            6 GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRND-WTKVEADCRKAIQLDHDSVKG   84 (281)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~a   84 (281)
                      +...-+.....|......+-+.+.|.+-...|.+++...|+++.+|..-|.=.+..+. .+.|...+.++++.+|++++.
T Consensus        97 at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~L  176 (568)
T KOG2396|consen   97 ATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKL  176 (568)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHH
Confidence            3343444566677777777777779999999999999999999999988877777775 899999999999999999876


Q ss_pred             HHH
Q 023501           85 HYL   87 (281)
Q Consensus        85 ~~~   87 (281)
                      |.-
T Consensus       177 w~e  179 (568)
T KOG2396|consen  177 WKE  179 (568)
T ss_pred             HHH
Confidence            643

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=93.41  E-value=1.2  Score=44.64  Aligned_cols=104  Identities=19%  Similarity=0.157  Sum_probs=85.9

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD--   78 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--   78 (281)
                      ..++.+..+..++..+...+++++|+..-.+|.-+        .|+....|.+++...+..++...|+..+.++.++.  
T Consensus       968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen  968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred             cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence            45677888999999999999999999998887654        24567889999999999999999999999988764  


Q ss_pred             ------CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           79 ------HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        79 ------p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                            |.-.-...+++.++..+++++.|+...+.|++..
T Consensus      1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence                  4444455778888888899999999999999864

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.39  E-value=0.83  Score=38.41  Aligned_cols=68  Identities=13%  Similarity=-0.004  Sum_probs=61.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL   77 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   77 (281)
                      ......++..++..+...++++.++..+++.+..+|.+-..|..+-..|++.|+...|+..|++.-++
T Consensus       149 ~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         149 EELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            34556778889999999999999999999999999999999999999999999999999999887654

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=93.34  E-value=0.093  Score=44.49  Aligned_cols=62  Identities=16%  Similarity=0.220  Sum_probs=48.3

Q ss_pred             CCCcccccCCcccccCcee-cCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHH
Q 023501          204 VPDYLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMD  272 (281)
Q Consensus       204 ~p~~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~  272 (281)
                      ..+-+.||+|.+.+..|+. =+.||.-|.+|=.+.   .. .||.|+.++..   +.+..+..+|+..+.
T Consensus        45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~---~~-~CP~Cr~~~g~---~R~~amEkV~e~~~v  107 (299)
T KOG3002|consen   45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV---SN-KCPTCRLPIGN---IRCRAMEKVAEAVLV  107 (299)
T ss_pred             chhhccCchhhccCcccceecCCCcEehhhhhhhh---cc-cCCcccccccc---HHHHHHHHHHHhcee
Confidence            3456789999999999996 568999999995432   22 59999999883   477888888877643

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.23  E-value=1.8  Score=35.85  Aligned_cols=92  Identities=12%  Similarity=0.022  Sum_probs=75.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChH-H
Q 023501           23 YYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN-DWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYA-D  100 (281)
Q Consensus        23 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~-~  100 (281)
                      +..+...-..|+..-..+|.++|.+..+|..|-.++..++ +..+-++++.+.++-+|.|...|..+-.+...+|++. .
T Consensus        52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r  131 (318)
T KOG0530|consen   52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR  131 (318)
T ss_pred             HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence            3345556678999999999999999999998888887665 6778888999999999999999999988888888887 6


Q ss_pred             HHHHHHHHHhhccC
Q 023501          101 GIKELEKALNLGRG  114 (281)
Q Consensus       101 A~~~~~kal~~~p~  114 (281)
                      -+.....++..+.+
T Consensus       132 ELef~~~~l~~DaK  145 (318)
T KOG0530|consen  132 ELEFTKLMLDDDAK  145 (318)
T ss_pred             hHHHHHHHHhcccc
Confidence            67777788877444

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=93.22  E-value=6.8  Score=36.76  Aligned_cols=101  Identities=12%  Similarity=0.006  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC--cchhHHH---HH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH--DSVKGHY---LL   88 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--~~~~a~~---~l   88 (281)
                      ...|...++..-..|=++.-...|++.|++.--.|..-.|.|..+-...-+++|.+.|++.|.+-+  .-.+.|.   ..
T Consensus       477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk  556 (835)
T KOG2047|consen  477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK  556 (835)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence            344555566666677888888899999999888888888999888888889999999999998874  3233332   23


Q ss_pred             HHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           89 GQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        89 a~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ...-+.-.+.+.|...|++|++.+|.
T Consensus       557 fi~rygg~klEraRdLFEqaL~~Cpp  582 (835)
T KOG2047|consen  557 FIKRYGGTKLERARDLFEQALDGCPP  582 (835)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence            33333334689999999999999883

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=93.21  E-value=0.14  Score=43.14  Aligned_cols=78  Identities=15%  Similarity=0.173  Sum_probs=55.1

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHH-HHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHH
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTN-RALCHLKRNDWTKVEADCRKAIQLDHDSVKGHY   86 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~   86 (281)
                      .-+..+..|...+.-..+.|-|.+--..|.+++...|.++.+|.. -+.=+...++++.+...+.++++++|+++..|+
T Consensus       102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~  180 (435)
T COG5191         102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI  180 (435)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence            334556666666666677777777777888888888887777765 333456667788888888888888877776554

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.11  E-value=1  Score=42.01  Aligned_cols=95  Identities=20%  Similarity=0.166  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhhcC
Q 023501           15 EQLRLDGNYYFSK-----DRYGAAIDAYTEAITL-----CPNVPIYWTNRALCHLKRN-----DWTKVEADCRKAIQLDH   79 (281)
Q Consensus        15 ~~~~~~g~~~~~~-----~~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~l~p   79 (281)
                      .....+|..++.-     +|.+.|+.+|..+...     .-.++.+.+.+|.+|.+..     ++..|+..+.+|-.++ 
T Consensus       245 ~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-  323 (552)
T KOG1550|consen  245 EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-  323 (552)
T ss_pred             HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-
Confidence            3344445554432     4666777777666551     0114455666666666543     4566666666666663 


Q ss_pred             cchhHHHHHHHHHHHhc---ChHHHHHHHHHHHhh
Q 023501           80 DSVKGHYLLGQTLLQRN---EYADGIKELEKALNL  111 (281)
Q Consensus        80 ~~~~a~~~la~~~~~~g---~~~~A~~~~~kal~~  111 (281)
                       ++.+.+.+|.++..-.   ++..|.++|..|...
T Consensus       324 -~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~  357 (552)
T KOG1550|consen  324 -NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA  357 (552)
T ss_pred             -CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc
Confidence             4566666666666544   455666666666544

>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]

Probab=92.91  E-value=0.082  Score=42.28  Aligned_cols=59  Identities=17%  Similarity=0.126  Sum_probs=45.6

Q ss_pred             cccccCCcccccCcee-cCCCcccccchHHhHhccCC-CCCCC--CCCCcCCCCCcccHHHHH
Q 023501          207 YLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVG-KFDPI--TREPLRESQLVPNLAIKE  265 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~-~~cP~--~~~~~~~~~~~~n~~l~~  265 (281)
                      ...|||+...-..|++ +.|+|.|+++-|...+.... ..||.  |.+.+..+.++.+..|..
T Consensus       189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~  251 (275)
T COG5627         189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEK  251 (275)
T ss_pred             cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHH
Confidence            4679999999999997 67999999999999997433 35885  556666667777765543

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.84  E-value=1.6  Score=28.81  Aligned_cols=30  Identities=20%  Similarity=0.199  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAIT   42 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~   42 (281)
                      .|..+...|..+=+.|+|++|+.+|+++++
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe   34 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIE   34 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            455666677777777777777777766655

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.74  E-value=0.19  Score=25.56  Aligned_cols=23  Identities=22%  Similarity=0.001  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHH
Q 023501           50 YWTNRALCHLKRNDWTKVEADCR   72 (281)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~   72 (281)
                      +..++|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            44556666666666666655543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=92.73  E-value=0.6  Score=35.03  Aligned_cols=52  Identities=17%  Similarity=0.060  Sum_probs=33.7

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChH
Q 023501           48 PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYA   99 (281)
Q Consensus        48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~   99 (281)
                      ......+|...+..|+|.-|.+.++.++..+|++..+...++.++.++|.-.
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~  121 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS  121 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence            3444455666667777777777777777777777777777777777777543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.68  E-value=0.54  Score=37.33  Aligned_cols=78  Identities=13%  Similarity=0.009  Sum_probs=59.1

Q ss_pred             HhcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc----chhHHHHHHHHHHHhcCh
Q 023501           25 FSKDRYGAAIDAYTEAITLCP--NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD----SVKGHYLLGQTLLQRNEY   98 (281)
Q Consensus        25 ~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~a~~~la~~~~~~g~~   98 (281)
                      +.+-.=++|...|-++- ..|  +++...+.+|..|. ..+.++|+..+.+++++.+.    +++.+..|+.++..+|++
T Consensus       117 Wsr~~d~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  117 WSRFGDQEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             hhccCcHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            44434467777776643 333  37888888887665 67899999999999998743    588999999999999999


Q ss_pred             HHHHHH
Q 023501           99 ADGIKE  104 (281)
Q Consensus        99 ~~A~~~  104 (281)
                      +.|.-+
T Consensus       195 e~AYiw  200 (203)
T PF11207_consen  195 EQAYIW  200 (203)
T ss_pred             hhhhhh
Confidence            988643

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.59  E-value=0.3  Score=36.73  Aligned_cols=63  Identities=21%  Similarity=0.157  Sum_probs=52.7

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCH
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDW   64 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~   64 (281)
                      +|+......|+.++.-.-.|..+..+|+|.+|+..+....+..+..+..--.++.|++.+||.
T Consensus        32 lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        32 MLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             HHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            344444556777888888999999999999999999998888888888888889999999874

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=92.48  E-value=1.4  Score=35.53  Aligned_cols=63  Identities=14%  Similarity=0.029  Sum_probs=53.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501           21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK   83 (281)
Q Consensus        21 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (281)
                      ...+++.+...+||.....-++..|.+......+-..+.-.|+|++|...++-+-+++|++..
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence            456778888899999999989999999888888888888899999999999999999988754

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=92.31  E-value=0.27  Score=41.59  Aligned_cols=80  Identities=11%  Similarity=0.101  Sum_probs=68.8

Q ss_pred             HHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHH-HHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           37 YTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYL-LGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        37 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~-la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      |.++-...|+|+.+|.-.+.-..+.|.|.+.-..|.++++..|.+++.|.. -+.-+...++++.+...|.+++.++|.+
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            444555578899999999888888889999999999999999999999987 5666788899999999999999998774


Q ss_pred             C
Q 023501          116 K  116 (281)
Q Consensus       116 ~  116 (281)
                      +
T Consensus       176 p  176 (435)
T COG5191         176 P  176 (435)
T ss_pred             c
Confidence            3

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=92.23  E-value=7.9  Score=37.61  Aligned_cols=94  Identities=16%  Similarity=0.051  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc----Ccc--
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV-----PIYWTNRALCHLKRNDWTKVEADCRKAIQLD----HDS--   81 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~----p~~--   81 (281)
                      .++.....|.+....|++++|+++.+.++..-|.+     ..+++..|.+..-.|++++|......+.++.    ..+  
T Consensus       457 ~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~  536 (894)
T COG2909         457 LAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLA  536 (894)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHH
Confidence            34555667889999999999999999999998764     5789999999999999999999999998874    322  


Q ss_pred             hhHHHHHHHHHHHhcC--hHHHHHHHH
Q 023501           82 VKGHYLLGQTLLQRNE--YADGIKELE  106 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~--~~~A~~~~~  106 (281)
                      .-+.+..+.++..+|+  +.+....+.
T Consensus       537 ~~~~~~~s~il~~qGq~~~a~~~~~~~  563 (894)
T COG2909         537 LWSLLQQSEILEAQGQVARAEQEKAFN  563 (894)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3344556888888893  333344443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.18  E-value=5.8  Score=32.71  Aligned_cols=98  Identities=11%  Similarity=0.086  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc------h
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITL-----CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS------V   82 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------~   82 (281)
                      |..+-..|..+-....+.++..+|++|..+     .|+-+..-..+|.=..+.-+.++|+..|++++.+-...      .
T Consensus        71 AKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~  150 (308)
T KOG1585|consen   71 AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF  150 (308)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence            344444455555666777788888887765     34444444444444456667888888888877654322      3


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      +.+-..+.++..+.+|++|-..+.+-...
T Consensus       151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~  179 (308)
T KOG1585|consen  151 ELYGKCSRVLVRLEKFTEAATAFLKEGVA  179 (308)
T ss_pred             HHHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence            34455567777788888887777665443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.12  E-value=8.7  Score=34.57  Aligned_cols=145  Identities=12%  Similarity=0.060  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP-----IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG   89 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la   89 (281)
                      -.+-..|..+.+++++.+|...|.+..+...+.+     +++.+|-.--+-+++.+.-.......-+..|..+......|
T Consensus         7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~   86 (549)
T PF07079_consen    7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKA   86 (549)
T ss_pred             HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            3455679999999999999999999877655543     45555555445567777777776666677788888899999


Q ss_pred             HHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           90 QTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALE  160 (281)
Q Consensus        90 ~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  160 (281)
                      ...++.+.|++|++.+..-.....+... .-+...+...+...--..-.+......|++.+....+++.+.
T Consensus        87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~-~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~  156 (549)
T PF07079_consen   87 LVAYKQKEYRKALQALSVWKEQIKGTES-PWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE  156 (549)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhhhccccc-chhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            9999999999999888655444222111 111222333333322222333444455555555544444433

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=92.08  E-value=0.041  Score=35.68  Aligned_cols=46  Identities=20%  Similarity=0.217  Sum_probs=31.1

Q ss_pred             ccccCCcccccC-ceec-CCCcccccchHHhHhccC--CCCCCCCCCCcC
Q 023501          208 LCCKITLDIFRD-PVIT-PSGVTYERAVILDHLDKV--GKFDPITREPLR  253 (281)
Q Consensus       208 ~~c~i~~~~~~~-pv~~-~~g~~~~~~~i~~~~~~~--~~~cP~~~~~~~  253 (281)
                      =.||-|.-.=-| |++. -|-|.|=.-||.+|+...  +..||+||+.+.
T Consensus        32 g~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   32 GCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            344554433333 6654 488999999999999643  335999998765

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=92.00  E-value=1.8  Score=34.93  Aligned_cols=76  Identities=16%  Similarity=0.177  Sum_probs=61.6

Q ss_pred             HHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHH
Q 023501           57 CHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLL  136 (281)
Q Consensus        57 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~  136 (281)
                      -+++-+...+|+...+.-++.+|.+......+-+.|.-.|+|++|...++-+-.+.|+...    ...++..+-+++...
T Consensus        10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~----~a~lyr~lir~ea~R   85 (273)
T COG4455          10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV----GASLYRHLIRCEAAR   85 (273)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch----HHHHHHHHHHHHHHH
Confidence            4567788999999999999999999999999999999999999999999999999776333    234445555554433

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=91.81  E-value=2.7  Score=37.33  Aligned_cols=60  Identities=18%  Similarity=0.223  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhc---------CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           51 WTNRALCHLKRNDWTKVEADCRKAIQLD---------HDSVKGHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~---------p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      ...+.+++.-+|||..|++.++-. .++         +.+...+|..|-+|+.+++|.+|+..|...+-.
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y  193 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY  193 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677888999999999887543 222         457789999999999999999999999988755

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.77  E-value=6.8  Score=32.64  Aligned_cols=86  Identities=13%  Similarity=0.061  Sum_probs=64.4

Q ss_pred             CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHH-HHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHH
Q 023501           29 RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWT-KVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEK  107 (281)
Q Consensus        29 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~k  107 (281)
                      +..+-+++++..++.+|.|..+|..|-.+...+|++. .-++.+..++..|..|..+|-.+--+....+.|+.-+.....
T Consensus        93 dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~  172 (318)
T KOG0530|consen   93 DLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE  172 (318)
T ss_pred             HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence            4556677777777778888888877777777777776 667777777887777777777777777777777777777777


Q ss_pred             HHhhccC
Q 023501          108 ALNLGRG  114 (281)
Q Consensus       108 al~~~p~  114 (281)
                      .++.+--
T Consensus       173 Lle~Di~  179 (318)
T KOG0530|consen  173 LLEEDIR  179 (318)
T ss_pred             HHHHhhh
Confidence            7776543

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=91.74  E-value=0.063  Score=49.99  Aligned_cols=65  Identities=11%  Similarity=0.221  Sum_probs=50.9

Q ss_pred             cccccCCcccccCceecCCCcccccchHHhHhccC--CCCCCCCCCCcCCCCCcccHHHHHHHHHHH
Q 023501          207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDKV--GKFDPITREPLRESQLVPNLAIKEAVRAYM  271 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~--~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~  271 (281)
                      .+.||||....++|+.+.|-|.||+.|+-..+...  ...||+|+..+.......-..-.+++++++
T Consensus        21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~l   87 (684)
T KOG4362|consen   21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKESL   87 (684)
T ss_pred             hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHhc
Confidence            45699999999999999999999999998876543  335999997776655555655677777663

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.73  E-value=0.55  Score=42.15  Aligned_cols=55  Identities=9%  Similarity=0.080  Sum_probs=25.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHH
Q 023501           18 RLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR   72 (281)
Q Consensus        18 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~   72 (281)
                      ...+.+.-..|+|+.|......+-..-..-..+...+-.-..++|.|+.|.....
T Consensus       327 ~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~  381 (831)
T PRK15180        327 QLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE  381 (831)
T ss_pred             HHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence            3445555666777777666554433322222222233333344444444444333

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.70  E-value=0.057  Score=44.62  Aligned_cols=43  Identities=23%  Similarity=0.159  Sum_probs=31.3

Q ss_pred             CCcccccCCcccccCceecCCCcc-cccchHHhHhccCCCCCCCCCCCc
Q 023501          205 PDYLCCKITLDIFRDPVITPSGVT-YERAVILDHLDKVGKFDPITREPL  252 (281)
Q Consensus       205 p~~~~c~i~~~~~~~pv~~~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~  252 (281)
                      ..+.+|.||.+.-.|=|.++|||. -|-.|=.+     -..||+||+.+
T Consensus       298 ~~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi  341 (350)
T KOG4275|consen  298 ATRRLCAICMDAPRDCVFLECGHMVTCTKCGKR-----MNECPICRQYI  341 (350)
T ss_pred             hHHHHHHHHhcCCcceEEeecCcEEeehhhccc-----cccCchHHHHH
Confidence            347889999999999999999996 34444111     11599998654

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.67  E-value=1.7  Score=38.19  Aligned_cols=96  Identities=21%  Similarity=0.213  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhh----c----Ccch
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN---VPIYWTNRALCHLKRNDWTKVEADCRKAIQL----D----HDSV   82 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l----~----p~~~   82 (281)
                      -..+.++|.-|...|+++.|++.|.++-+...+   -...+.|.-.+-..+|+|.....+..+|...    .    .-.+
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~  229 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA  229 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence            456788999999999999999999997665443   2456666666777899999988888888665    1    1235


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHH
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKAL  109 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal  109 (281)
                      +.....|.+.+.+++|..|..+|..+.
T Consensus       230 kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  230 KLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            667778888999999999999887553

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=91.40  E-value=4.3  Score=40.89  Aligned_cols=101  Identities=19%  Similarity=0.170  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHH------HHHHH-HHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc------
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAID------AYTEA-ITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD------   78 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~------~~~~a-l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~------   78 (281)
                      ..+....+.|......+.+.+|.+      .++.. -.+.|..+..|..++..+..+|++++|+....+|.-+.      
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence            567788889999999999998888      55533 23467889999999999999999999999999987654      


Q ss_pred             --CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           79 --HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        79 --p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                        |+....+..++...+..++...|+..+.+++.+.
T Consensus      1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~ 1045 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLK 1045 (1236)
T ss_pred             CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhh
Confidence              5667788888988888889999999988888764

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=91.40  E-value=9.6  Score=33.61  Aligned_cols=110  Identities=14%  Similarity=0.031  Sum_probs=79.6

Q ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHhh----cCcchhHHHHHHHHHHH---hcChHHHHHHHHHHHhhccCCCCCc
Q 023501           47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQL----DHDSVKGHYLLGQTLLQ---RNEYADGIKELEKALNLGRGAKPKG  119 (281)
Q Consensus        47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l----~p~~~~a~~~la~~~~~---~g~~~~A~~~~~kal~~~p~~~~~~  119 (281)
                      ++.+..++-.+|....+|+.-+...+..-.+    -+..+...+.+|.++..   .|+.++|+..+..++......    
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~----  215 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP----  215 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC----
Confidence            4566677777899999999999988887666    45677788899999999   999999999999976664332    


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023501          120 YIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEK  162 (281)
Q Consensus       120 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (281)
                        ..++.-.++++-+.++...........+.+.....+..+.+
T Consensus       216 --~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~  256 (374)
T PF13281_consen  216 --DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE  256 (374)
T ss_pred             --ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence              23566677777776666543333344666666666666554

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=91.18  E-value=1.3  Score=32.16  Aligned_cols=28  Identities=21%  Similarity=0.220  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 023501           16 QLRLDGNYYFSKDRYGAAIDAYTEAITL   43 (281)
Q Consensus        16 ~~~~~g~~~~~~~~~~~A~~~~~~al~~   43 (281)
                      .+..+|+..++.+++-.||-+|++|+.+
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~   30 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSL   30 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence            5678899999999999999999999875

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=91.13  E-value=12  Score=34.38  Aligned_cols=73  Identities=11%  Similarity=0.131  Sum_probs=61.1

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501            4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL   77 (281)
Q Consensus         4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   77 (281)
                      ++.++.+|.+...|..+-..+-.+ .+++....|++.+...|..+.+|......-++.++|+.....+.+++.-
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK   82 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            345667788888888887766665 8999999999999999999999988888888889999999999888754

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=90.87  E-value=0.051  Score=53.67  Aligned_cols=43  Identities=26%  Similarity=0.253  Sum_probs=38.4

Q ss_pred             cccccCCccccc-CceecCCCcccccchHHhHhccCCCCCCCCCC
Q 023501          207 YLCCKITLDIFR-DPVITPSGVTYERAVILDHLDKVGKFDPITRE  250 (281)
Q Consensus       207 ~~~c~i~~~~~~-~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~  250 (281)
                      .+.|++|+++++ .--+..|||.+|..|++.|+..... ||.|..
T Consensus      1153 ~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~-~~~~ks 1196 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSR-CPICKS 1196 (1394)
T ss_pred             ccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhcc-Ccchhh
Confidence            578999999999 5668899999999999999998884 999973

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.78  E-value=0.22  Score=43.29  Aligned_cols=35  Identities=11%  Similarity=0.210  Sum_probs=28.3

Q ss_pred             CcccccCCcccccCce---ecCCCcccccchHHhHhcc
Q 023501          206 DYLCCKITLDIFRDPV---ITPSGVTYERAVILDHLDK  240 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv---~~~~g~~~~~~~i~~~~~~  240 (281)
                      ..|.|.||++-...-+   .+||+|.||++|+..+++.
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~  220 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTI  220 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHH
Confidence            3578999997776633   5899999999999998753

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.58  E-value=0.8  Score=30.20  Aligned_cols=17  Identities=18%  Similarity=0.225  Sum_probs=9.7

Q ss_pred             hHHHHHHHHHHHhhccC
Q 023501           98 YADGIKELEKALNLGRG  114 (281)
Q Consensus        98 ~~~A~~~~~kal~~~p~  114 (281)
                      |.+|++.+.+++...|+
T Consensus        29 Y~~aIe~L~q~~~~~pD   45 (75)
T cd02682          29 YKKAIEVLSQIVKNYPD   45 (75)
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence            34555556666666555

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.56  E-value=0.71  Score=38.63  Aligned_cols=45  Identities=20%  Similarity=0.106  Sum_probs=40.3

Q ss_pred             HHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           67 VEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        67 A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      |..+|.+|+.+.|.++..|..+|.+....|+.=.|+-+|-+++..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~   45 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV   45 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhc
Confidence            678999999999999999999999999999999999999999855

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=90.47  E-value=3  Score=33.22  Aligned_cols=54  Identities=15%  Similarity=0.130  Sum_probs=35.7

Q ss_pred             HhcCHHHHHHHHHHHHhhc-CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           60 KRNDWTKVEADCRKAIQLD-HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        60 ~~~~~~~A~~~~~~al~l~-p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      +.|+ +.|..-+-++-... -+.++..+.+|..|. ..+.++|+..+.+++++.+..
T Consensus       119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~  173 (203)
T PF11207_consen  119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD  173 (203)
T ss_pred             ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC
Confidence            4454 66666654432222 246777788887665 667889999999999886553

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=90.45  E-value=1.2  Score=33.32  Aligned_cols=50  Identities=10%  Similarity=-0.025  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRND   63 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~   63 (281)
                      ++.+...+...+..|+|.-|....+.++..+|++..+...++.++.++|.
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            35566777888888888888888888888888888888888887776663

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=90.30  E-value=10  Score=33.44  Aligned_cols=73  Identities=11%  Similarity=0.017  Sum_probs=46.6

Q ss_pred             HhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------------c------------Cc---chhHHHHHHHHH
Q 023501           42 TLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL--------------D------------HD---SVKGHYLLGQTL   92 (281)
Q Consensus        42 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--------------~------------p~---~~~a~~~la~~~   92 (281)
                      ..+|-....+..++.++...|+...|.+.+++|+-.              +            +.   ...+.++....+
T Consensus        34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L  113 (360)
T PF04910_consen   34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL  113 (360)
T ss_pred             HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence            456666667777777777777766666666666421              1            11   234556666677


Q ss_pred             HHhcChHHHHHHHHHHHhhccC
Q 023501           93 LQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        93 ~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .+.|-+..|.+..+-.+.++|.
T Consensus       114 ~~RG~~rTAlE~~KlLlsLdp~  135 (360)
T PF04910_consen  114 GRRGCWRTALEWCKLLLSLDPD  135 (360)
T ss_pred             HhcCcHHHHHHHHHHHHhcCCC
Confidence            7777777777777777777766

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.30  E-value=4  Score=38.15  Aligned_cols=93  Identities=17%  Similarity=0.089  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhcC-----CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhcCcchhHHHH
Q 023501           16 QLRLDGNYYFSKD-----RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN---DWTKVEADCRKAIQLDHDSVKGHYL   87 (281)
Q Consensus        16 ~~~~~g~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~~~a~~~   87 (281)
                      +...+|..|++..     ++..|+.+|.++.+...  +...+.+|.++....   ++..|.+++..|.+.  .+..+.++
T Consensus       290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~  365 (552)
T KOG1550|consen  290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYR  365 (552)
T ss_pred             cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHH
Confidence            3456778887743     78999999999988754  556666788887655   678999999999877  46889999


Q ss_pred             HHHHHHHh----cChHHHHHHHHHHHhhc
Q 023501           88 LGQTLLQR----NEYADGIKELEKALNLG  112 (281)
Q Consensus        88 la~~~~~~----g~~~~A~~~~~kal~~~  112 (281)
                      +|.+|..=    .+...|..++.++-+..
T Consensus       366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  366 LALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            99988752    47899999999999884

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.27  E-value=12  Score=34.11  Aligned_cols=97  Identities=22%  Similarity=0.229  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHh-hcCcc------
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN---VPIYWTNRALCHLKRNDWTKVEADCRKAIQ-LDHDS------   81 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-l~p~~------   81 (281)
                      ..+..+..+|..+..-+-|+.|...|..|......   .+.+..|+|..|...|+-+.    +.++++ +.|.|      
T Consensus       365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i~p~nt~s~ss  440 (629)
T KOG2300|consen  365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAED----LYKALDLIGPLNTNSLSS  440 (629)
T ss_pred             hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHH----HHHHHHhcCCCCCCcchH
Confidence            34778889999999999999999999999887654   35677788999998877553    333332 34432      


Q ss_pred             ----hhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           82 ----VKGHYLLGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        82 ----~~a~~~la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                          ..++|..|...+.++++.+|...+.+.++..
T Consensus       441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence                3467778888889999999999999999985

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=90.06  E-value=5.6  Score=35.42  Aligned_cols=96  Identities=9%  Similarity=-0.076  Sum_probs=61.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCC---------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501           19 LDGNYYFSKDRYGAAIDAYTEAITLCPN---------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG   89 (281)
Q Consensus        19 ~~g~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la   89 (281)
                      -+...+.-.|||..|++.... |+++..         ...+++..|-||+++++|.+|++.+...+----..-..+....
T Consensus       127 gLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~  205 (404)
T PF10255_consen  127 GLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRS  205 (404)
T ss_pred             HHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence            344566788999999999765 333322         4678899999999999999999999988643211111111111


Q ss_pred             HHHHH-hcChHHHHHHHHHHHhhccCC
Q 023501           90 QTLLQ-RNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        90 ~~~~~-~g~~~~A~~~~~kal~~~p~~  115 (281)
                      .-+-. .+..++....+--++.+.|..
T Consensus       206 ~q~d~i~K~~eqMyaLlAic~~l~p~~  232 (404)
T PF10255_consen  206 YQYDQINKKNEQMYALLAICLSLCPQR  232 (404)
T ss_pred             chhhHHHhHHHHHHHHHHHHHHhCCCC
Confidence            11111 234566666666677777753

>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74)

Probab=90.05  E-value=0.41  Score=33.70  Aligned_cols=71  Identities=23%  Similarity=0.360  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHhcCcCCCC--C-CCCcccccCCcccccCceecC--CC----cccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501          185 MEALRQVFRKAAEDDTPA--E-VPDYLCCKITLDIFRDPVITP--SG----VTYERAVILDHLDKVGKFDPITREPLRES  255 (281)
Q Consensus       185 ~~~l~~~~~~~~~~~~~~--~-~p~~~~c~i~~~~~~~pv~~~--~g----~~~~~~~i~~~~~~~~~~cP~~~~~~~~~  255 (281)
                      ...+...+....+.-.+.  . ....+.|||+..+-..-|...  .|    .-|++..+.+.+..+.. -|++|+|++..
T Consensus        15 ~~~l~~kI~~csF~V~~~~f~C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~~-HPLSREpit~s   93 (113)
T PF06416_consen   15 RNQLQDKISSCSFSVNSEEFQCPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGAP-HPLSREPITPS   93 (113)
T ss_dssp             ---HHHHHHHC-EE--CCCCTS-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TT
T ss_pred             hHHHHHHHHhcccccChhhccCCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCCC-CCCccCCCChh
Confidence            344555566654332222  2 235688999999999988633  22    45889999999887764 89999999865


Q ss_pred             C
Q 023501          256 Q  256 (281)
Q Consensus       256 ~  256 (281)
                      -
T Consensus        94 M   94 (113)
T PF06416_consen   94 M   94 (113)
T ss_dssp             T
T ss_pred             h
Confidence            3

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=89.94  E-value=2.4  Score=35.14  Aligned_cols=62  Identities=11%  Similarity=-0.054  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--Cc----chhHHHHHHHHHHHhcChHHHHHHHHHHH
Q 023501           48 PIYWTNRALCHLKRNDWTKVEADCRKAIQLD--HD----SVKGHYLLGQTLLQRNEYADGIKELEKAL  109 (281)
Q Consensus        48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--p~----~~~a~~~la~~~~~~g~~~~A~~~~~kal  109 (281)
                      ..+...+|.-|+..|+|++|+..++.+...-  ..    ....+..+..++..+|+.+..+...-+.+
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            4455567777888888888888888775432  12    24566677777777888777776654443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=89.88  E-value=0.17  Score=34.98  Aligned_cols=27  Identities=11%  Similarity=0.114  Sum_probs=23.9

Q ss_pred             CCCcccccchHHhHhccCCCCCCCCCCC
Q 023501          224 PSGVTYERAVILDHLDKVGKFDPITREP  251 (281)
Q Consensus       224 ~~g~~~~~~~i~~~~~~~~~~cP~~~~~  251 (281)
                      -|+|.|=--||.+|+..... ||+|.++
T Consensus        80 ~CNHaFH~hCisrWlktr~v-CPLdn~e  106 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLKTRNV-CPLDNKE  106 (114)
T ss_pred             ecchHHHHHHHHHHHhhcCc-CCCcCcc
Confidence            48999999999999998884 9999865

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=89.70  E-value=19  Score=34.34  Aligned_cols=30  Identities=20%  Similarity=0.323  Sum_probs=18.8

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYT   38 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~   38 (281)
                      .-|++...+-.+|..+-..|.-++|++.|-
T Consensus       847 ~Lpe~s~llp~~a~mf~svGMC~qAV~a~L  876 (1189)
T KOG2041|consen  847 TLPEDSELLPVMADMFTSVGMCDQAVEAYL  876 (1189)
T ss_pred             hcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence            345555566666776666677666666653

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=89.66  E-value=5.6  Score=39.47  Aligned_cols=98  Identities=14%  Similarity=0.066  Sum_probs=73.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHh----c---CHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501           20 DGNYYFSKDRYGAAIDAYTEAITLCPNVP---IYWTNRALCHLKR----N---DWTKVEADCRKAIQLDHDSVKGHYLLG   89 (281)
Q Consensus        20 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~----~---~~~~A~~~~~~al~l~p~~~~a~~~la   89 (281)
                      ..++++..+.|+.|+..|++.-...|+..   ++.+..|.+.+..    |   .+.+|+.-+++. --.|.-|--|.-.|
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  559 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKA  559 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence            35678888999999999999999999854   4445556555433    2   356666665543 23466677788889


Q ss_pred             HHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501           90 QTLLQRNEYADGIKELEKALNLGRGAKPK  118 (281)
Q Consensus        90 ~~~~~~g~~~~A~~~~~kal~~~p~~~~~  118 (281)
                      .+|-.+|++++-++.|.-|++-.|..+.-
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        560 LVYQRLGEYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence            99999999999999999999998875553

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=89.56  E-value=1  Score=40.98  Aligned_cols=76  Identities=9%  Similarity=-0.061  Sum_probs=62.6

Q ss_pred             hhhchHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            6 GLAGVAKQAEQLRLDGNYYFSKD---RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      +++..+.....+-+++.++++++   +--.|+.-...|++++|....+++.++.++..++.+.+|+.....+....|.+
T Consensus       400 a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  400 AIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             HhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence            44555666677777787777654   66678899999999999999999999999999999999999888777777743

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=89.54  E-value=11  Score=31.65  Aligned_cols=90  Identities=22%  Similarity=0.117  Sum_probs=67.5

Q ss_pred             HHHHHHHHHhc-----C--CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh----cCHHHHHHHHHHHHhhcCcchhHH
Q 023501           17 LRLDGNYYFSK-----D--RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKR----NDWTKVEADCRKAIQLDHDSVKGH   85 (281)
Q Consensus        17 ~~~~g~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~l~p~~~~a~   85 (281)
                      ...+|..+..-     -  +...|+..|.++....  ++.+..++|.+|..-    .++++|..++.+|.+...  ..+.
T Consensus       151 ~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~  226 (292)
T COG0790         151 MYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAAC  226 (292)
T ss_pred             HHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHH
Confidence            55556555543     1  3347999999987776  788888899888653    389999999999999987  8899


Q ss_pred             HHHHHHHHHhc---------------ChHHHHHHHHHHHhh
Q 023501           86 YLLGQTLLQRN---------------EYADGIKELEKALNL  111 (281)
Q Consensus        86 ~~la~~~~~~g---------------~~~~A~~~~~kal~~  111 (281)
                      +.++ ++...|               +...|..++.++...
T Consensus       227 ~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~  266 (292)
T COG0790         227 YNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL  266 (292)
T ss_pred             HHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence            9999 777666               556666666666555

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.42  E-value=3.9  Score=36.10  Aligned_cols=88  Identities=16%  Similarity=0.189  Sum_probs=69.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc--CHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcC----hHH
Q 023501           27 KDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN--DWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNE----YAD  100 (281)
Q Consensus        27 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~----~~~  100 (281)
                      ..-.++-+.+...++..+|+...+|..|..++.+.+  +|..-+..++++++.||.|..+|..+=.+......    ..+
T Consensus        88 ~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~  167 (421)
T KOG0529|consen   88 QALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKE  167 (421)
T ss_pred             HHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchh
Confidence            335667788899999999999999999999998777  47899999999999999999988766555554433    455


Q ss_pred             HHHHHHHHHhhccC
Q 023501          101 GIKELEKALNLGRG  114 (281)
Q Consensus       101 A~~~~~kal~~~p~  114 (281)
                      -++...+++.-++.
T Consensus       168 El~ftt~~I~~nfS  181 (421)
T KOG0529|consen  168 ELEFTTKLINDNFS  181 (421)
T ss_pred             HHHHHHHHHhccch
Confidence            66777777766444

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=89.28  E-value=0.41  Score=41.10  Aligned_cols=76  Identities=14%  Similarity=-0.062  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501           16 QLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT   91 (281)
Q Consensus        16 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~   91 (281)
                      ...+.+..-++.+.+..|+..-..+++.++....+++.++..++.+.++++|+.++..+....|++....-.+..+
T Consensus       277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~  352 (372)
T KOG0546|consen  277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV  352 (372)
T ss_pred             cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence            3445677788899999999999999999999999999999999999999999999999999999987655444433

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=89.28  E-value=18  Score=33.55  Aligned_cols=91  Identities=14%  Similarity=0.029  Sum_probs=72.6

Q ss_pred             HhcCCHHH-HHHHHHHHHHhCCCchHHHHH--HHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHH
Q 023501           25 FSKDRYGA-AIDAYTEAITLCPNVPIYWTN--RALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADG  101 (281)
Q Consensus        25 ~~~~~~~~-A~~~~~~al~~~p~~~~~~~~--~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A  101 (281)
                      +..+..+. |+..+...+..+|.++.++..  ++..+..+++...+.-..+.++..+|.+..++..+|.++...|....+
T Consensus        41 l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~  120 (620)
T COG3914          41 LNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLA  120 (620)
T ss_pred             hcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHH
Confidence            34444444 778888888889998877444  488888899999999999999999999999999999999998877777


Q ss_pred             HHHHHH-HHhhccCC
Q 023501          102 IKELEK-ALNLGRGA  115 (281)
Q Consensus       102 ~~~~~k-al~~~p~~  115 (281)
                      +..+.. +....|.+
T Consensus       121 ~~~~~~~a~~~~~~~  135 (620)
T COG3914         121 LADISEIAEWLSPDN  135 (620)
T ss_pred             HHHHHHHHHhcCcch
Confidence            665554 77776653

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=89.25  E-value=0.79  Score=26.79  Aligned_cols=23  Identities=13%  Similarity=0.070  Sum_probs=12.1

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHH
Q 023501           53 NRALCHLKRNDWTKVEADCRKAI   75 (281)
Q Consensus        53 ~~a~~~~~~~~~~~A~~~~~~al   75 (281)
                      ++|.+|..+|+++.|...+++++
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHH
Confidence            44555555555555555555555

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.93  E-value=1.4  Score=29.30  Aligned_cols=15  Identities=27%  Similarity=0.372  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHhhccC
Q 023501          100 DGIKELEKALNLGRG  114 (281)
Q Consensus       100 ~A~~~~~kal~~~p~  114 (281)
                      +|++.|..++...|+
T Consensus        31 ~aie~l~~~lk~e~d   45 (77)
T cd02683          31 EGIDLLMQVLKGTKD   45 (77)
T ss_pred             HHHHHHHHHHhhCCC
Confidence            344444555555443

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=88.89  E-value=21  Score=34.81  Aligned_cols=64  Identities=17%  Similarity=-0.002  Sum_probs=50.5

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHH----------HhhcC----------cchhHHHHHHHHHHHhcChHHHHHHHHH
Q 023501           48 PIYWTNRALCHLKRNDWTKVEADCRKA----------IQLDH----------DSVKGHYLLGQTLLQRNEYADGIKELEK  107 (281)
Q Consensus        48 ~~~~~~~a~~~~~~~~~~~A~~~~~~a----------l~l~p----------~~~~a~~~la~~~~~~g~~~~A~~~~~k  107 (281)
                      -..|++.|.-+-..++.+.|+++|+++          ++-+|          .+...|...|+-+...|+.+.|+..|.+
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            357888888888889999999999875          22234          2456677789999999999999999998


Q ss_pred             HHhh
Q 023501          108 ALNL  111 (281)
Q Consensus       108 al~~  111 (281)
                      |-+.
T Consensus       938 A~D~  941 (1416)
T KOG3617|consen  938 AKDY  941 (1416)
T ss_pred             hhhh
Confidence            8654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.88  E-value=3.3  Score=37.51  Aligned_cols=80  Identities=15%  Similarity=0.106  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL   93 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~   93 (281)
                      ...|+.+|..++.+|+++-|..+|.++=+        +..+...|.-.|+-+.-.+....|......+.     .-.++.
T Consensus       347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~-----af~~~~  413 (443)
T PF04053_consen  347 PEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGDINI-----AFQAAL  413 (443)
T ss_dssp             HHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHH-----HHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccCHHH-----HHHHHH
Confidence            34555555555555555555555555332        33344444555554444444444433322111     223344


Q ss_pred             HhcChHHHHHHHH
Q 023501           94 QRNEYADGIKELE  106 (281)
Q Consensus        94 ~~g~~~~A~~~~~  106 (281)
                      .+|+.++.++.+.
T Consensus       414 ~lgd~~~cv~lL~  426 (443)
T PF04053_consen  414 LLGDVEECVDLLI  426 (443)
T ss_dssp             HHT-HHHHHHHHH
T ss_pred             HcCCHHHHHHHHH
Confidence            4455555554444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=88.79  E-value=5.5  Score=33.60  Aligned_cols=80  Identities=16%  Similarity=0.184  Sum_probs=61.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHhC----CC----chHHHHHHHHHHHHhc-CHHHHHHHHHHHHhh----cC---c-------
Q 023501           24 YFSKDRYGAAIDAYTEAITLC----PN----VPIYWTNRALCHLKRN-DWTKVEADCRKAIQL----DH---D-------   80 (281)
Q Consensus        24 ~~~~~~~~~A~~~~~~al~~~----p~----~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l----~p---~-------   80 (281)
                      ..++|+++.|..+|.++-...    |+    -+..+++.|...+..+ +++.|..++++|+++    .+   .       
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            467899999999999986654    33    2478888899888999 999999999999887    21   1       


Q ss_pred             chhHHHHHHHHHHHhcChHHHHH
Q 023501           81 SVKGHYLLGQTLLQRNEYADGIK  103 (281)
Q Consensus        81 ~~~a~~~la~~~~~~g~~~~A~~  103 (281)
                      ....+..++.+|...+.++...+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~k  105 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEK  105 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHH
Confidence            24567788899988887654333

It is also involved in sporulation [].

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=88.75  E-value=3.4  Score=39.06  Aligned_cols=85  Identities=7%  Similarity=0.048  Sum_probs=61.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG   89 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la   89 (281)
                      +...-.++.+.|..+.....+++|.++|.+.-.        .-+...|++.+++|++-    +.....-|++.+.+-.+|
T Consensus       792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a  859 (1189)
T KOG2041|consen  792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGEL----EVLARTLPEDSELLPVMA  859 (1189)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHH
Confidence            444567788899999999999999999977533        33567788888887753    444445577777777788


Q ss_pred             HHHHHhcChHHHHHHHH
Q 023501           90 QTLLQRNEYADGIKELE  106 (281)
Q Consensus        90 ~~~~~~g~~~~A~~~~~  106 (281)
                      +++...|--++|++.|.
T Consensus       860 ~mf~svGMC~qAV~a~L  876 (1189)
T KOG2041|consen  860 DMFTSVGMCDQAVEAYL  876 (1189)
T ss_pred             HHHHhhchHHHHHHHHH
Confidence            88777777766666553

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=88.62  E-value=0.12  Score=33.31  Aligned_cols=40  Identities=20%  Similarity=0.153  Sum_probs=23.1

Q ss_pred             ccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501          208 LCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLR  253 (281)
Q Consensus       208 ~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~  253 (281)
                      ..||.|..    |+....|+-+|..|-..+... . .||-|+++|.
T Consensus         2 ~~CP~C~~----~L~~~~~~~~C~~C~~~~~~~-a-~CPdC~~~Le   41 (70)
T PF07191_consen    2 NTCPKCQQ----ELEWQGGHYHCEACQKDYKKE-A-FCPDCGQPLE   41 (70)
T ss_dssp             -B-SSS-S----BEEEETTEEEETTT--EEEEE-E-E-TTT-SB-E
T ss_pred             CcCCCCCC----ccEEeCCEEECccccccceec-c-cCCCcccHHH
Confidence            57999984    444456899999998876543 3 4999999875

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=88.53  E-value=5.5  Score=26.52  Aligned_cols=57  Identities=18%  Similarity=0.124  Sum_probs=44.4

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhhcCcchh---HHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           55 ALCHLKRNDWTKVEADCRKAIQLDHDSVK---GHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        55 a~~~~~~~~~~~A~~~~~~al~l~p~~~~---a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      |.=++..++.++|+.-.+++++..++...   ++-.+..+|...|+|++++.....-+.+
T Consensus        13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33366788899999999999998877655   4445567888999999998887766655

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=88.52  E-value=15  Score=32.66  Aligned_cols=64  Identities=16%  Similarity=0.138  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch--HHHHHHHHHH--HHhcCHHHHHHHHHHHHhh
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP--IYWTNRALCH--LKRNDWTKVEADCRKAIQL   77 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~--~~~~~~~~A~~~~~~al~l   77 (281)
                      +......+..+|..++|..|...+......-|.+.  ..+..++.+|  ...-++++|.+.++..+..
T Consensus       131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            35667888999999999999999999988534333  4566665555  4666899999998877653

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.40  E-value=11  Score=29.91  Aligned_cols=58  Identities=21%  Similarity=0.260  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhcCc-c--hhHHHHHHHHHHHhcChHHHHHHHHHH
Q 023501           51 WTNRALCHLKRNDWTKVEADCRKAIQLDHD-S--VKGHYLLGQTLLQRNEYADGIKELEKA  108 (281)
Q Consensus        51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-~--~~a~~~la~~~~~~g~~~~A~~~~~ka  108 (281)
                      -..+|..+...|++++|+..++.++....+ +  .-+-.++|.++.++|++++|+..+...
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~  152 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI  152 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence            344677888899999999999999865432 2  345688999999999999999887643

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=88.10  E-value=5.2  Score=33.09  Aligned_cols=60  Identities=12%  Similarity=0.029  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhcCHHHHHHHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN------VPIYWTNRALCHLKRNDWTKVEADCRK   73 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~   73 (281)
                      ......+|..|+..|+|++|+.+|+.+......      ...+...+..|+..+|+.+..+..+-+
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le  243 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE  243 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            344456777777777777777777777544322      235566666777777777766665543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=86.85  E-value=4.8  Score=36.89  Aligned_cols=73  Identities=15%  Similarity=0.092  Sum_probs=65.5

Q ss_pred             HHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           38 TEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        38 ~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      ++-|+.+|.|...|+.+-.-+. ...++++...+++.+..-|..+.+|.......+...+|+.-...|.++|.-
T Consensus        10 ~~rie~nP~di~sw~~lire~q-t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQ-TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK   82 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHc-cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            5678999999999998877554 448999999999999999999999999999999999999999999988854

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=86.73  E-value=2.1  Score=27.53  Aligned_cols=30  Identities=27%  Similarity=0.263  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAIT   42 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~   42 (281)
                      .|..+...|..+=+.|+|++|+.+|.+|++
T Consensus         4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~   33 (69)
T PF04212_consen    4 KAIELIKKAVEADEAGNYEEALELYKEAIE   33 (69)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345556666666667777777777766665

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.73  E-value=1.2  Score=26.05  Aligned_cols=27  Identities=11%  Similarity=0.193  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           85 HYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        85 ~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      .+.+|.+|+.+|+.+.|...++.++.-
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            367999999999999999999999954

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=86.67  E-value=2.1  Score=22.26  Aligned_cols=28  Identities=21%  Similarity=0.298  Sum_probs=17.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCchHHHHHHH
Q 023501           28 DRYGAAIDAYTEAITLCPNVPIYWTNRA   55 (281)
Q Consensus        28 ~~~~~A~~~~~~al~~~p~~~~~~~~~a   55 (281)
                      |+++.|...|++++...|.++.+|...+
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~   28 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYA   28 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            3456666666666666666666665444

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=86.62  E-value=3.3  Score=34.92  Aligned_cols=58  Identities=16%  Similarity=0.025  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHH
Q 023501           16 QLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK   73 (281)
Q Consensus        16 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~   73 (281)
                      .+...+..|...|.|.+|+.+.++++.++|-+...+..+-..+..+|+--.|.+.+++
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer  338 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER  338 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence            3445577789999999999999999999999999999999999999997777766654

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=86.60  E-value=22  Score=31.33  Aligned_cols=104  Identities=18%  Similarity=0.129  Sum_probs=75.2

Q ss_pred             hhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------------CCC------------ch---HHHHHHHHH
Q 023501            7 LAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------------CPN------------VP---IYWTNRALC   57 (281)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------------~p~------------~~---~~~~~~a~~   57 (281)
                      ++..|-....+..++.++..+|+++.|.++.++|+-.              ++.            |-   .+.......
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~  112 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS  112 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence            3556677888999999999999999999999888632              111            22   334445566


Q ss_pred             HHHhcCHHHHHHHHHHHHhhcCc-chhHHHHH-HHHHHHhcChHHHHHHHHHHHh
Q 023501           58 HLKRNDWTKVEADCRKAIQLDHD-SVKGHYLL-GQTLLQRNEYADGIKELEKALN  110 (281)
Q Consensus        58 ~~~~~~~~~A~~~~~~al~l~p~-~~~a~~~l-a~~~~~~g~~~~A~~~~~kal~  110 (281)
                      +.+.|-+.-|++.++-.+.+||. ++-+-... -......++|+--++.++....
T Consensus       113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            77889999999999999999998 76654444 3444556677766666665444

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=86.53  E-value=9.7  Score=27.20  Aligned_cols=61  Identities=15%  Similarity=0.140  Sum_probs=49.2

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhhcCcch---hHHHHHHHHHHHhcC-----------hHHHHHHHHHHHhhccC
Q 023501           54 RALCHLKRNDWTKVEADCRKAIQLDHDSV---KGHYLLGQTLLQRNE-----------YADGIKELEKALNLGRG  114 (281)
Q Consensus        54 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~~~la~~~~~~g~-----------~~~A~~~~~kal~~~p~  114 (281)
                      +|.-++..|++-+|++..+..+...+++.   -.+..-|.++..+..           .-.+++.|.++..+.|.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~   76 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD   76 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence            46678899999999999999999987765   567777888877653           35778888888888766

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=86.36  E-value=0.19  Score=40.37  Aligned_cols=44  Identities=14%  Similarity=0.109  Sum_probs=33.2

Q ss_pred             cccccCCc-ccccCce----ecC-CCcccccchHHhHhccCCCCCC--CCCC
Q 023501          207 YLCCKITL-DIFRDPV----ITP-SGVTYERAVILDHLDKVGKFDP--ITRE  250 (281)
Q Consensus       207 ~~~c~i~~-~~~~~pv----~~~-~g~~~~~~~i~~~~~~~~~~cP--~~~~  250 (281)
                      +-.||+|. +..-+|-    +.| |=|.+|-+|+.+-+..++..||  -|++
T Consensus        10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k   61 (314)
T COG5220          10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK   61 (314)
T ss_pred             cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence            34699996 3444443    356 8899999999999998887899  6754

>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.29  E-value=0.68  Score=29.73  Aligned_cols=35  Identities=17%  Similarity=0.215  Sum_probs=27.2

Q ss_pred             CcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHH
Q 023501          226 GVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAI  263 (281)
Q Consensus       226 g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l  263 (281)
                      -+|||.+|.+.-+  ++ .||.|+-.|....+.|--.|
T Consensus        28 EcTFCadCae~~l--~g-~CPnCGGelv~RP~RPaa~L   62 (84)
T COG3813          28 ECTFCADCAENRL--HG-LCPNCGGELVARPIRPAAKL   62 (84)
T ss_pred             eeehhHhHHHHhh--cC-cCCCCCchhhcCcCChHHHH
Confidence            4799999999877  34 49999988877777775444

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=85.90  E-value=0.49  Score=40.13  Aligned_cols=48  Identities=13%  Similarity=0.165  Sum_probs=32.1

Q ss_pred             CcccccCCcccccC--ce--ecCCCcccccchHHhHhcc-CCCCCCCCCCCcCCC
Q 023501          206 DYLCCKITLDIFRD--PV--ITPSGVTYERAVILDHLDK-VGKFDPITREPLRES  255 (281)
Q Consensus       206 ~~~~c~i~~~~~~~--pv--~~~~g~~~~~~~i~~~~~~-~~~~cP~~~~~~~~~  255 (281)
                      +++ ||+|.+.|--  --  .-|||...|+-|....-+. ++ .||-||......
T Consensus        14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lng-rcpacrr~y~de   66 (480)
T COG5175          14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNG-RCPACRRKYDDE   66 (480)
T ss_pred             ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccC-CChHhhhhcccc
Confidence            445 9999877652  11  1469998888886554333 45 499999876654

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.58  E-value=14  Score=34.87  Aligned_cols=66  Identities=12%  Similarity=0.018  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC------cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           49 IYWTNRALCHLKRNDWTKVEADCRKAIQLDH------DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p------~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .++-|-|.-+++..+|..+++.|...++--|      .+.+....++.+|..+.+.+.|.++++.|-+.+|.
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~  426 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ  426 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc
Confidence            4555677788999999999999999988655      45788999999999999999999999999999776

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=85.37  E-value=0.59  Score=40.62  Aligned_cols=35  Identities=11%  Similarity=0.025  Sum_probs=24.9

Q ss_pred             cCCCccc-----ccchHHhHhccC------------CCCCCCCCCCcCCCCC
Q 023501          223 TPSGVTY-----ERAVILDHLDKV------------GKFDPITREPLRESQL  257 (281)
Q Consensus       223 ~~~g~~~-----~~~~i~~~~~~~------------~~~cP~~~~~~~~~~~  257 (281)
                      .+|+.-|     |-+|+-+|+.+.            ...||.||.+|+..++
T Consensus       304 ~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV  355 (358)
T PF10272_consen  304 PPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV  355 (358)
T ss_pred             CCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence            4566665     558999997542            2369999999986554

They are purported to be transmembrane protein-precursors but their function is unknown.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.37  E-value=2.7  Score=27.84  Aligned_cols=31  Identities=26%  Similarity=0.202  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAIT   42 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~   42 (281)
                      ..|..+...|..+=+.|+|++|+.+|..+++
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie   34 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQ   34 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3455566666777777777777777777766

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins

Probab=84.84  E-value=6.9  Score=27.77  Aligned_cols=51  Identities=14%  Similarity=0.115  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN   62 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~   62 (281)
                      +.+......|...+..|||+.|.+...++-+..+.....|..-|.+-..+|
T Consensus        57 ~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g  107 (108)
T PF07219_consen   57 RKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG  107 (108)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence            344445555555566666666666665554444443444443344433333

These are membrane protein involved in a late step of protoheme IX synthesis [].

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.41  E-value=40  Score=32.88  Aligned_cols=84  Identities=19%  Similarity=0.224  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLC-PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG   89 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la   89 (281)
                      ...++.+...|+-+|++|+|++|+..|-++|..- |....-.      +.......+=..+++...+..-.+..--..|-
T Consensus       365 d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~k------fLdaq~IknLt~YLe~L~~~gla~~dhttlLL  438 (933)
T KOG2114|consen  365 DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKK------FLDAQRIKNLTSYLEALHKKGLANSDHTTLLL  438 (933)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHH------hcCHHHHHHHHHHHHHHHHcccccchhHHHHH
Confidence            3457788899999999999999999999988763 3221111      12222223333344444444333333334455


Q ss_pred             HHHHHhcChHH
Q 023501           90 QTLLQRNEYAD  100 (281)
Q Consensus        90 ~~~~~~g~~~~  100 (281)
                      .+|.++++.++
T Consensus       439 ncYiKlkd~~k  449 (933)
T KOG2114|consen  439 NCYIKLKDVEK  449 (933)
T ss_pred             HHHHHhcchHH
Confidence            66766666544

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=83.98  E-value=8.9  Score=28.52  Aligned_cols=81  Identities=9%  Similarity=0.058  Sum_probs=42.1

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH-HHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHH
Q 023501           26 SKDRYGAAIDAYTEAITLCPNVPIYWTNRALCH-LKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKE  104 (281)
Q Consensus        26 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~  104 (281)
                      ..|+...-+.+|-..    ..+. =|..+|.-+ ...|.-++--+.+....+.+..+++.+..+|.+|..+|+..+|-+.
T Consensus        68 ~C~NlKrVi~C~~~~----n~~s-e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~el  142 (161)
T PF09205_consen   68 KCGNLKRVIECYAKR----NKLS-EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANEL  142 (161)
T ss_dssp             G-S-THHHHHHHHHT----T----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             hhcchHHHHHHHHHh----cchH-HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHH
Confidence            445555666665432    1112 233444433 3445544444455555555566778888888888888888888888


Q ss_pred             HHHHHhh
Q 023501          105 LEKALNL  111 (281)
Q Consensus       105 ~~kal~~  111 (281)
                      +.+|-+-
T Consensus       143 l~~ACek  149 (161)
T PF09205_consen  143 LKEACEK  149 (161)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            8887665

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=83.26  E-value=8.1  Score=33.35  Aligned_cols=85  Identities=16%  Similarity=0.098  Sum_probs=61.5

Q ss_pred             CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--cCcchhHHHHHHHHHHHhcChHHHHHHHH
Q 023501           29 RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL--DHDSVKGHYLLGQTLLQRNEYADGIKELE  106 (281)
Q Consensus        29 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p~~~~a~~~la~~~~~~g~~~~A~~~~~  106 (281)
                      +|..-..+|+-...+.| ++.+-.|++.+..+..-.+.++...+-...-  -..+...|-..|..+.++|+.++|-..|+
T Consensus       311 DW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd  389 (415)
T COG4941         311 DWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD  389 (415)
T ss_pred             ChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence            44455555665555555 4777788988887776677776666554433  12455677788999999999999999999


Q ss_pred             HHHhhccC
Q 023501          107 KALNLGRG  114 (281)
Q Consensus       107 kal~~~p~  114 (281)
                      +++.+.++
T Consensus       390 rAi~La~~  397 (415)
T COG4941         390 RAIALARN  397 (415)
T ss_pred             HHHHhcCC
Confidence            99999655

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=83.20  E-value=0.64  Score=34.19  Aligned_cols=44  Identities=18%  Similarity=0.257  Sum_probs=31.8

Q ss_pred             cccccCCcccccC--cee-cCCCc------ccccchHHhHhccCCCCCCCCCCC
Q 023501          207 YLCCKITLDIFRD--PVI-TPSGV------TYERAVILDHLDKVGKFDPITREP  251 (281)
Q Consensus       207 ~~~c~i~~~~~~~--pv~-~~~g~------~~~~~~i~~~~~~~~~~cP~~~~~  251 (281)
                      .+.|.||.+-..+  -|+ .+||.      .||.+|+.+|-.... .+|.-|..
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~-rDPfnR~I   78 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERN-RDPFNRNI   78 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhcc-CCCcccce
Confidence            5669999865555  554 56665      499999999965454 49988754

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.15  E-value=11  Score=24.97  Aligned_cols=31  Identities=19%  Similarity=0.220  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAIT   42 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~   42 (281)
                      ..|..+...|..+=+.|+|++|+.+|.++|+
T Consensus         4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie   34 (77)
T cd02683           4 LAAKEVLKRAVELDQEGRFQEALVCYQEGID   34 (77)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3455566666777777777777777766665

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=83.09  E-value=43  Score=31.79  Aligned_cols=103  Identities=18%  Similarity=0.103  Sum_probs=75.3

Q ss_pred             hHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc--
Q 023501           10 VAKQAEQLRLDGNYYF-SKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD--   80 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--   80 (281)
                      +...+.....+|..++ ...+++.|..++++++.+...+      ..+.+.++.++.+.+... |...++++|+.-..  
T Consensus        55 p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~  133 (608)
T PF10345_consen   55 PRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG  133 (608)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC
Confidence            4557888999999998 7789999999999998886431      234445688888777766 99999999887644  


Q ss_pred             --chhHHHHHH--HHHHHhcChHHHHHHHHHHHhhcc
Q 023501           81 --SVKGHYLLG--QTLLQRNEYADGIKELEKALNLGR  113 (281)
Q Consensus        81 --~~~a~~~la--~~~~~~g~~~~A~~~~~kal~~~p  113 (281)
                        .....+++-  ..+...+++..|++.++....+..
T Consensus       134 ~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~  170 (608)
T PF10345_consen  134 HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN  170 (608)
T ss_pred             chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence              233333333  223233799999999999988853

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.92  E-value=18  Score=36.17  Aligned_cols=105  Identities=17%  Similarity=0.131  Sum_probs=71.3

Q ss_pred             hhhhchHHHHHHHH---------HHHHHHHhcCCHHHHHHHHHH------HHHh----------------CCCchHHHHH
Q 023501            5 AGLAGVAKQAEQLR---------LDGNYYFSKDRYGAAIDAYTE------AITL----------------CPNVPIYWTN   53 (281)
Q Consensus         5 ~~~~~~~~~a~~~~---------~~g~~~~~~~~~~~A~~~~~~------al~~----------------~p~~~~~~~~   53 (281)
                      .|++.++.....+.         +.|......+-|++|-..|.+      |+..                .-+.+.+|+.
T Consensus      1030 tAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsq 1109 (1666)
T KOG0985|consen 1030 TAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQ 1109 (1666)
T ss_pred             HHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHH
Confidence            34555555554443         345666666677777666643      1111                2235788899


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           54 RALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        54 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +|.+.++.|...+|++.|-+|     +++..|...-.+..+.|.|++-+.++.-+.+....
T Consensus      1110 lakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E 1165 (1666)
T KOG0985|consen 1110 LAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE 1165 (1666)
T ss_pred             HHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC
Confidence            999988888899998888554     56777888888888888888888888777766433

>PF14353 CpXC: CpXC protein

Probab=82.59  E-value=0.85  Score=33.56  Aligned_cols=46  Identities=17%  Similarity=0.060  Sum_probs=30.8

Q ss_pred             ccccCCcccccCceecCCCcccccchHHhHhccCC--CCCCCCCCCcC
Q 023501          208 LCCKITLDIFRDPVITPSGVTYERAVILDHLDKVG--KFDPITREPLR  253 (281)
Q Consensus       208 ~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~--~~cP~~~~~~~  253 (281)
                      +.||-|+..+.-.|-+.=..+-...-.+.-+...-  .+||.||..+.
T Consensus         2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~   49 (128)
T PF14353_consen    2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR   49 (128)
T ss_pred             cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence            57999999888877554444444455666665432  25999997753

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=82.47  E-value=3.9  Score=21.08  Aligned_cols=30  Identities=13%  Similarity=0.047  Sum_probs=24.1

Q ss_pred             cCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501           62 NDWTKVEADCRKAIQLDHDSVKGHYLLGQT   91 (281)
Q Consensus        62 ~~~~~A~~~~~~al~l~p~~~~a~~~la~~   91 (281)
                      |+++.|...+++++...|.++..|...+..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            467888889999999989888888776653

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=82.14  E-value=0.83  Score=38.91  Aligned_cols=45  Identities=18%  Similarity=0.151  Sum_probs=36.0

Q ss_pred             CcccccCCcccccCceecCCCcccccchHHhH--hccCCCCCCCCCCC
Q 023501          206 DYLCCKITLDIFRDPVITPSGVTYERAVILDH--LDKVGKFDPITREP  251 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~--~~~~~~~cP~~~~~  251 (281)
                      +...|-||-.-..--.++||||..|-.|-.+.  |-... .||+|+..
T Consensus        60 en~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K-~C~~CrTE  106 (493)
T COG5236          60 ENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQK-GCPLCRTE  106 (493)
T ss_pred             ccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhcc-CCCccccc
Confidence            46789999988888888999999999998653  43344 49999865

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.63  E-value=12  Score=37.21  Aligned_cols=60  Identities=10%  Similarity=0.049  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQ   76 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   76 (281)
                      +.+.+|..+|.+.++.|.-.+||+.|-+|     +|+..|...-....+.|.|++-++++..|-+
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            45678999999999999999999999664     5567777777777788888887777766644

>PF12854 PPR_1: PPR repeat

Probab=81.23  E-value=4.1  Score=22.06  Aligned_cols=27  Identities=4%  Similarity=-0.213  Sum_probs=17.4

Q ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHH
Q 023501           47 VPIYWTNRALCHLKRNDWTKVEADCRK   73 (281)
Q Consensus        47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~   73 (281)
                      |...|..+-..|.+.|+.++|.+.+++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            345566666667777777777666553

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=80.91  E-value=41  Score=30.02  Aligned_cols=101  Identities=11%  Similarity=0.056  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh----hcCcchh
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLC------PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQ----LDHDSVK   83 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----l~p~~~~   83 (281)
                      +..|+-+...+-..++...-...+...+...      -+.+.+.+.+-.+|+..+.|+.|-+...++.-    .+..+..
T Consensus       169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR  248 (493)
T KOG2581|consen  169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR  248 (493)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence            4555555555556666555444444443321      22356666677888888899999777666541    2226788


Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           84 GHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .+|.+|.+..-+++|..|.+++..|+...|.
T Consensus       249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq  279 (493)
T KOG2581|consen  249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQ  279 (493)
T ss_pred             HHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence            8999999999999999999999999999886

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.87  E-value=16  Score=32.78  Aligned_cols=98  Identities=17%  Similarity=0.214  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----------hCCCchHHHHHHHHHHHHhcCH---HHHH---HHHHHHHh
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAIT-----------LCPNVPIYWTNRALCHLKRNDW---TKVE---ADCRKAIQ   76 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~-----------~~p~~~~~~~~~a~~~~~~~~~---~~A~---~~~~~al~   76 (281)
                      +.-+...|.+++..+.|.+|+..+-.|=+           ...+.+......-.||+.+.+.   .+|.   .-+++.+.
T Consensus       163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~  242 (568)
T KOG2561|consen  163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE  242 (568)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence            44567889999999999999988765533           3344555666677889988862   2222   22333332


Q ss_pred             h------------c-Ccc------hhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           77 L------------D-HDS------VKGHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        77 l------------~-p~~------~~a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      .            . +..      ...+..-|.+.+++|+-++|.+.++.+-+.
T Consensus       243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~  296 (568)
T KOG2561|consen  243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK  296 (568)
T ss_pred             hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            2            1 222      344556699999999999999999877643

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.84  E-value=0.55  Score=27.58  Aligned_cols=32  Identities=22%  Similarity=0.187  Sum_probs=21.6

Q ss_pred             ecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501          222 ITPSGVTYERAVILDHLDKVGKFDPITREPLRE  254 (281)
Q Consensus       222 ~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~  254 (281)
                      +.-+.|=-|..||..-+..+.. ||+|+.+++.
T Consensus        16 i~C~dHYLCl~CLt~ml~~s~~-C~iC~~~LPt   47 (50)
T PF03854_consen   16 IKCSDHYLCLNCLTLMLSRSDR-CPICGKPLPT   47 (50)
T ss_dssp             EE-SS-EEEHHHHHHT-SSSSE-ETTTTEE---
T ss_pred             eeecchhHHHHHHHHHhccccC-CCcccCcCcc
Confidence            3445688899999999887774 9999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=80.75  E-value=2.6  Score=27.16  Aligned_cols=16  Identities=13%  Similarity=0.447  Sum_probs=7.3

Q ss_pred             hcChHHHHHHHHHHHh
Q 023501           95 RNEYADGIKELEKALN  110 (281)
Q Consensus        95 ~g~~~~A~~~~~kal~  110 (281)
                      .|++++|+..|.+++.
T Consensus        18 ~g~~~~A~~~Y~~ai~   33 (69)
T PF04212_consen   18 AGNYEEALELYKEAIE   33 (69)
T ss_dssp             TTSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            3444444444444443

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=80.71  E-value=6.2  Score=32.23  Aligned_cols=91  Identities=20%  Similarity=0.166  Sum_probs=54.9

Q ss_pred             HhcCCHHHHHHHHHHHHHhC---CCc---------hHHHHHHHHHHHHhcC-HHHHHHHHHHHHhh----c-Ccc--hhH
Q 023501           25 FSKDRYGAAIDAYTEAITLC---PNV---------PIYWTNRALCHLKRND-WTKVEADCRKAIQL----D-HDS--VKG   84 (281)
Q Consensus        25 ~~~~~~~~A~~~~~~al~~~---p~~---------~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l----~-p~~--~~a   84 (281)
                      +..|+|+.|+....-||+.+   |+.         ++-...-|......|+ ++-..  ......+    + |+-  .+.
T Consensus        94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~--~~~~~~l~~~~dmpd~vrAKl  171 (230)
T PHA02537         94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYF--LRVFLDLTTEWDMPDEVRAKL  171 (230)
T ss_pred             eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHH--HHHHHHHHhcCCCChHHHHHH
Confidence            67899999999999999885   332         1222223333344444 22221  1222222    1 333  455


Q ss_pred             HHHHHHHHH---------HhcChHHHHHHHHHHHhhccCCCC
Q 023501           85 HYLLGQTLL---------QRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        85 ~~~la~~~~---------~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      |-..|..+.         ..++...|+.++++|+.++|+.+.
T Consensus       172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV  213 (230)
T PHA02537        172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV  213 (230)
T ss_pred             HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence            566666663         456788999999999999887544

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=80.70  E-value=6.8  Score=30.67  Aligned_cols=56  Identities=16%  Similarity=0.097  Sum_probs=31.8

Q ss_pred             CCCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCC-CcccHHHHHHHHHHHH
Q 023501          201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQ-LVPNLAIKEAVRAYMD  272 (281)
Q Consensus       201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~-~~~n~~l~~~i~~~~~  272 (281)
                      ...-+..+.||-|+.-++               ..+.+..+ +.||.||.++...+ -.--..|+..|+..-+
T Consensus       111 ~e~~~~~Y~Cp~C~~ryt---------------f~eA~~~~-F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~  167 (178)
T PRK06266        111 EEENNMFFFCPNCHIRFT---------------FDEAMEYG-FRCPQCGEMLEEYDNSELIKELKEQIKELEE  167 (178)
T ss_pred             hccCCCEEECCCCCcEEe---------------HHHHhhcC-CcCCCCCCCCeecccHHHHHHHHHHHHHHHH
Confidence            344467889998763221               12233334 46999999987643 2223445666665533

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.67  E-value=4.3  Score=26.78  Aligned_cols=9  Identities=0%  Similarity=-0.270  Sum_probs=3.3

Q ss_pred             CHHHHHHHH
Q 023501           63 DWTKVEADC   71 (281)
Q Consensus        63 ~~~~A~~~~   71 (281)
                      +|++|+..|
T Consensus        21 ny~eA~~lY   29 (75)
T cd02680          21 NAEEAIELY   29 (75)
T ss_pred             hHHHHHHHH
Confidence            333333333

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=80.62  E-value=4.2  Score=24.78  Aligned_cols=32  Identities=13%  Similarity=0.189  Sum_probs=18.9

Q ss_pred             cccccCCcccccCceecCCCcccccchHHhHhcc------CCCCCCCCCC
Q 023501          207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDK------VGKFDPITRE  250 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~------~~~~cP~~~~  250 (281)
                      .|.||.|++ -.+           ...|..++..      ....||+|..
T Consensus         2 ~f~CP~C~~-~~~-----------~~~L~~H~~~~H~~~~~~v~CPiC~~   39 (54)
T PF05605_consen    2 SFTCPYCGK-GFS-----------ESSLVEHCEDEHRSESKNVVCPICSS   39 (54)
T ss_pred             CcCCCCCCC-ccC-----------HHHHHHHHHhHCcCCCCCccCCCchh
Confidence            578999886 222           3444444332      2235999975

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=80.55  E-value=97  Score=34.13  Aligned_cols=112  Identities=14%  Similarity=0.039  Sum_probs=86.9

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-Cc--------
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-HD--------   80 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~--------   80 (281)
                      ....++.|...|...-+.|.++-|-.+.-.|.+..  -+.++..+|..+...|+-..|+..+++.+.++ |+        
T Consensus      1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred             cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence            56678899999999999999999999999988776  58899999999999999999999999999765 22        


Q ss_pred             --------chhHHHHHHHHHHHhcCh--HHHHHHHHHHHhhccCCCCCcchHH
Q 023501           81 --------SVKGHYLLGQTLLQRNEY--ADGIKELEKALNLGRGAKPKGYIVE  123 (281)
Q Consensus        81 --------~~~a~~~la~~~~~~g~~--~~A~~~~~kal~~~p~~~~~~~~~~  123 (281)
                              ..++.+..+.-....|++  .+-+..|..+.++.|.-.+..+...
T Consensus      1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred             chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence                    122344444444445553  4557889999999886666655554

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.39  E-value=0.63  Score=38.64  Aligned_cols=30  Identities=10%  Similarity=0.058  Sum_probs=21.9

Q ss_pred             ccccchHHhHhcc------------CCCCCCCCCCCcCCCCC
Q 023501          228 TYERAVILDHLDK------------VGKFDPITREPLRESQL  257 (281)
Q Consensus       228 ~~~~~~i~~~~~~------------~~~~cP~~~~~~~~~~~  257 (281)
                      -.|++||-+|+..            ++..||.||+.++..++
T Consensus       328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv  369 (381)
T KOG3899|consen  328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV  369 (381)
T ss_pred             HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence            4678999998643            23469999999876543

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=80.34  E-value=0.97  Score=37.76  Aligned_cols=43  Identities=12%  Similarity=0.070  Sum_probs=35.6

Q ss_pred             cccccCCcccccC----ceecCCCcccccchHHhHhccCCCCCCCCCC
Q 023501          207 YLCCKITLDIFRD----PVITPSGVTYERAVILDHLDKVGKFDPITRE  250 (281)
Q Consensus       207 ~~~c~i~~~~~~~----pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~  250 (281)
                      .+.||||.+.++.    |...+|||+.=..|.++....+ .+||+|..
T Consensus       158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~  204 (276)
T KOG1940|consen  158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK  204 (276)
T ss_pred             cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence            4559999877664    6678999998889999988877 67999976

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	281
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		3e-44
2f42_A	179	Dimerization And U-Box Domains Of Zebrafish C-Termi		2e-25
2c2v_S	78	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		6e-22
2oxq_C	80	Structure Of The Ubch5 :chip U-Box Complex Length =		3e-20
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		3e-17
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		2e-10
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		1e-09
1wao_1	477	Pp5 Structure Length = 477		2e-09
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		3e-09
1t1h_A	78	Nmr Solution Structure Of The U Box Domain From Atp		2e-08
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		2e-08
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		5e-08
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		8e-08
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-07
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		4e-07
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		4e-07
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		5e-07
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		8e-07
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-06
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		3e-06
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		3e-06
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		8e-06
2c0l_A	305	Tpr Domain Of Human Pex5p In Complex With Human Msc		3e-05
1fch_A	368	Crystal Structure Of The Pts1 Complexed To The Tpr		3e-05
2j9q_A	328	A Novel Conformation For The Tpr Domain Of Pex5p Le		3e-05
3r9a_B	328	Human Alanine-Glyoxylate Aminotransferase In Comple		3e-05
2c0m_A	319	Apo Form Of The Tpr Domain Of The Pex5p Receptor Le		3e-05
3esk_A	129	Structure Of Hop Tpr2a Domain In Complex With The N		5e-05
2kre_A	100	Solution Structure Of E4bUFD2A U-Box Domain Length		6e-05
1elr_A	131	Crystal Structure Of The Tpr2a Domain Of Hop In Com		6e-05
2kr4_A	85	U-Box Domain Of The E3 Ubiquitin Ligase E4b Length		1e-04
2l6j_A	111	Tah1 Complexed By Meevd Length = 111		3e-04
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		4e-04
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		4e-04
1wgm_A	98	Solution Structure Of The U-Box In Human Ubiquitin		5e-04
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		5e-04

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score =  175 bits (443), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 100/276 (36%), Positives = 149/276 (53%), Gaps = 15/276 (5%)
Query: 14  AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73
           A++L+  GN  F   +Y  A   Y  AIT  P V +Y+TNRALC+LK     +  ADCR+
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 74  AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAK 133
           A++LD  SVK H+ LGQ  L+   Y + I  L++A +L +  +      +DI   L  AK
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN--FGDDIPSALRIAK 121
Query: 134 YLLWEQESSKR---SWELQSXXXXXXXXXXXXHVLDISRK-EGFLDEA---------SST 180
              W     +R     EL S             + +  R  EG  D+           + 
Sbjct: 122 KKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAK 181
Query: 181 HLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK 240
           H K M  + ++F +  E     ++PDYLC KI+ ++ R+P ITPSG+TY+R  I +HL +
Sbjct: 182 HDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR 241
Query: 241 VGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGW 276
           VG F+P+TR PL + QL+PNLA+KE + A++ ++GW
Sbjct: 242 VGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 277

>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of Hsp70 Interacting Protein Length = 179

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 75/112 (66%)
Query: 166 DISRKEGFLDEASSTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPS 225
           D S+  G + +  S H K +  + ++F +  E     E+PDYLC KI+ ++ R+P ITPS
Sbjct: 65  DDSQNGGDISKMKSKHDKYLMDMDELFSQVDEKRKKREIPDYLCGKISFELMREPCITPS 124
Query: 226 GVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWA 277
           G+TY+R  I +HL +VG FDP+TR PL + QL+PNLA+KE + A++ ++GW 
Sbjct: 125 GITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV 176

>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 78

Iteration: 1
 Score =  101 bits (251), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/74 (52%), Positives = 59/74 (79%)
Query: 203 EVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLA 262
           ++PDYLC KI+ ++ R+P ITPSG+TY+R  I +HL +VG F+P+TR PL + QL+PNLA
Sbjct: 1   DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA 60
Query: 263 IKEAVRAYMDKHGW 276
           +KE + A++ ++GW
Sbjct: 61  MKEVIDAFISENGW 74

>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex Length = 80

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/72 (52%), Positives = 56/72 (77%)
Query: 203 EVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLA 262
           E+PDYLC KI+ ++  +P ITPSG+TY+R  I +HL +VG FDP+TR PL + QL+PNLA
Sbjct: 9   EIPDYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLA 68
Query: 263 IKEAVRAYMDKH 274
           +KE + A++ ++
Sbjct: 69  MKEVIDAFIQEN 80

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 60/100 (60%)
Query: 14  AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73
           A++L+  GN  F   +Y  A   Y  AIT  P V +Y+TNRALC+LK     +  ADCR+
Sbjct: 9   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 74  AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGR 113
           A++LD  SVK H+ LGQ  L+   Y + I  L++A +L +
Sbjct: 69  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 11  AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--CP-NVPIYWTNRALCHLKRNDWTKV 67
           A   EQLR +GN  F    YG A+ AYT+A+ L   P +  +   NRA CHLK  D+ K 
Sbjct: 25  ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKA 84
Query: 68  EADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQ 127
           E +  KAI+ D   VK  Y   Q L +       + +L++ ++L    +PK  + ++  +
Sbjct: 85  ETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL----EPKNKVFQEALR 140
Query: 128 ELA 130
            ++
Sbjct: 141 NIS 143

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 55/103 (53%)
Query: 9   GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVE 68
           G  K+AE+L+   N YF    Y  AI  Y++AI L P+  IY+ NR+L +L+   +    
Sbjct: 8   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 67
Query: 69  ADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            D  +AI+LD   +KG+Y    + +   ++   +++ E  + +
Sbjct: 68  GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 55/103 (53%)
Query: 9   GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVE 68
           G  K+AE+L+   N YF    Y  AI  Y++AI L P+  IY+ NR+L +L+   +    
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 60
Query: 69  ADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            D  +AI+LD   +KG+Y    + +   ++   +++ E  + +
Sbjct: 61  GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 103

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 203 EVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLA 262
           E P+Y  C I+L++ +DPVI  +G TYER+ I   LD   K  P ++E L  + L PN  
Sbjct: 4   EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYV 63
Query: 263 IKEAVRAYMDKHG 275
           +K  +  + + +G
Sbjct: 64  LKSLIALWCESNG 76

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 50/96 (52%)
Query: 13  QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72
           +AE+ RL+G  YF+K  +  A+ AYTE I   P     ++NRA    K   + +  ADC 
Sbjct: 3   KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 62
Query: 73  KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKA 108
           KAI+ D + V+ +       +   EYA  ++ L+ A
Sbjct: 63  KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 98

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%)
Query: 13  QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72
           +AE+L+ +GN     + + AA+  Y +AI L P   +Y+ NRA  + K  ++     DC 
Sbjct: 11  EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 70
Query: 73  KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           +AI +D    K +  +G  L   N++ + +   +KAL L
Sbjct: 71  RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 50/96 (52%)
Query: 13  QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72
           +AE+ RL+G  YF+K  +  A+ AYTE I   P     ++NRA    K   + +  ADC 
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197
Query: 73  KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKA 108
           KAI+ D + V+ +       +   EYA  ++ L+ A
Sbjct: 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 51/98 (52%)
Query: 14  AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73
           AE  +  GN Y+ +  Y  AI+ Y +A+ L PN    W N    + K+ D+ K     +K
Sbjct: 9   AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 74  AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           A++LD ++ K  Y  G    ++ +Y   I++ +KAL L
Sbjct: 69  ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALEL 106

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 6  GLAGVAKQAE--QLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRND 63
          GL+   +QA   QL+  GN++F+   +  AI  Y  AI L PN P++++N + C++   D
Sbjct: 11 GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGD 70
Query: 64 WTKVEADCRKAIQLDHDSVKG 84
            KV     KA+++  D  K 
Sbjct: 71 LEKVIEFTTKALEIKPDHSKA 91

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 6  GLAGVAKQAE--QLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRND 63
          GL+   +QA   QL+  GN++F+   +  AI  Y  AI L PN P++++N + C++   D
Sbjct: 15 GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGD 74
Query: 64 WTKVEADCRKAIQLDHDSVKG 84
            KV     KA+++  D  K 
Sbjct: 75 LEKVIEFTTKALEIKPDHSKA 95

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 48/98 (48%)
Query: 14  AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73
           A++ +  GN YF K  Y  A+  Y EA+   P   I ++NRA C  K  ++ +   DC  
Sbjct: 13  AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 74  AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            I+LD   +KG+      L+   E++   +  E AL +
Sbjct: 73  CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           GN  F K  Y  A+  YTEAI   P     ++NRA C+ K  ++     DC + IQL+  
Sbjct: 23  GNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82
Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKY 134
            +KG+      L    +Y   +   +KAL+L    K       D +Q    A+Y
Sbjct: 83  FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKE----AADGYQRCMMAQY 132

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           GN Y+ +  Y  AI+ Y +A+ L PN    W N    + K+ D+ +     +KA++LD +
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           + +  Y LG    ++ +Y + I+  +KAL L
Sbjct: 76  NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 13  QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72
           ++++L+ +GN   ++  Y  AID YT+A+++ P  PIY +NRA  +       K   D  
Sbjct: 10  ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAE 69
Query: 73  KAIQLDHDSVKGHYLLGQTLLQRNEYAD--GIKE 104
            A  +D    K    LG   L R + AD  G KE
Sbjct: 70  LATVVDPKYSKAWSRLG---LARFDMADYKGAKE 100

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           GN Y+ +  Y  AI+ Y +A+ L P     W N    + K+ D+ +     +KA++LD  
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           S +  Y LG    ++ +Y + I+  +KAL L
Sbjct: 68  SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           GN Y+ +  Y  AI+ Y +A+ L PN    W N    + K+ D+ +     +KA++L  +
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           + +  Y LG    ++ +Y + I+  +KAL L
Sbjct: 76  NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106

>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G  +     Y  A+D +T A+++ PN  + W          N   +  A  R+A++L   
Sbjct: 161 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 220
Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK-PK---GYIVEDIWQELARAKYLL 136
            ++  Y LG + +    + + ++   +ALN+ R ++ P+   G + E+IW  L  A  +L
Sbjct: 221 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 280
Query: 137 WEQES 141
            + ++
Sbjct: 281 GQSDA 285

>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 30  YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG 89
           Y  A+D +T A+++ PN  + W          N   +  A  R+A++L    ++  Y LG
Sbjct: 233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 292
Query: 90  QTLLQRNEYADGIKELEKALNLGRGAK-PK---GYIVEDIWQELARAKYLLWEQES 141
            + +    + + ++   +ALN+ R ++ P+   G + E+IW  L  A  +L + ++
Sbjct: 293 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348

>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G  +     Y  A+D +T A+++ PN  + W          N   +  A  R+A++L   
Sbjct: 184 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 243
Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK-PK---GYIVEDIWQELARAKYLL 136
            ++  Y LG + +    + + ++   +ALN+ R ++ P+   G + E+IW  L  A  +L
Sbjct: 244 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 303
Query: 137 WEQES 141
            + ++
Sbjct: 304 GQSDA 308

>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 30  YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG 89
           Y  A+D +T A+++ PN  + W          N   +  A  R+A++L    ++  Y LG
Sbjct: 193 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 252
Query: 90  QTLLQRNEYADGIKELEKALNLGRGAK-PK---GYIVEDIWQELARAKYLLWEQES 141
            + +    + + ++   +ALN+ R ++ P+   G + E+IW  L  A  +L + ++
Sbjct: 253 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 308

>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G  +     Y  A+D +T A+++ PN  + W          N   +  A  R+A++L   
Sbjct: 175 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 234
Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK-PK---GYIVEDIWQELARAKYLL 136
            ++  Y LG + +    + + ++   +ALN+ R ++ P+   G + E+IW  L  A  +L
Sbjct: 235 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 294
Query: 137 WEQES 141
            + ++
Sbjct: 295 GQSDA 299

>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The Non-Cognate Hsc70 Peptide Ligand Length = 129

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 11  AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD 70
            KQA + +  GN  + K  +  A+  Y +A  L P    Y TN+A  + ++ D+ K    
Sbjct: 1   GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60
Query: 71  CRKAIQLDHDS-------VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVE 123
           C KAI++  ++        K +  +G +  +  +Y D I    K+L   R          
Sbjct: 61  CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR--------TP 112
Query: 124 DIWQELARAKYLLWEQE 140
           D+ ++  +A+ +L EQE
Sbjct: 113 DVLKKCQQAEKILKEQE 129

>pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain Length = 100

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 202 AEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNL 261
           ++ PD     +   +  DPV  PSG   +R++IL HL      DP  R+ L ES L P  
Sbjct: 24  SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVP 82
Query: 262 AIKEAVRAYM 271
            +KE ++A+M
Sbjct: 83  ELKEQIQAWM 92

>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex With The Hsp90 Peptide Meevd Length = 131

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 11  AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD 70
            KQA + +  GN  + K  +  A+  Y +A  L P    Y TN+A  + ++ D+ K    
Sbjct: 1   GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60
Query: 71  CRKAIQLDHDS-------VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVE 123
           C KAI++  ++        K +  +G +  +  +Y D I    K+L   R          
Sbjct: 61  CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR--------TP 112
Query: 124 DIWQELARAKYLLWEQE 140
           D+ ++  +A+ +L EQE
Sbjct: 113 DVLKKCQQAEKILKEQE 129

>pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b Length = 85

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 202 AEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNL 261
           ++ PD     +   +  DPV  PSG   +R++IL HL      DP  R+ L ES L P  
Sbjct: 9   SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVP 67
Query: 262 AIKEAVRAYM 271
            +KE ++A+M
Sbjct: 68  ELKEQIQAWM 77

>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd Length = 111

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 13  QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72
           Q E+ +  GN  F +  Y  A+  Y + IT  P  P+ ++N+A+  +K  ++T+    C+
Sbjct: 3   QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQ 62
Query: 73  KAIQLDHDSVKGHYLLGQTLLQRNEYADG 101
           +   L + S   H  +   L  R E A G
Sbjct: 63  QG--LRYTSTAEHVAIRSKLQYRLELAQG 89

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 51  WTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALN 110
           + N A+C+LK  ++TK    C KA+ LD  + KG Y  G+  L  NE+     + EK L 
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379
Query: 111 L 111
           +
Sbjct: 380 V 380

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 51  WTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALN 110
           + N A+C+LK  ++TK    C KA+ LD  + KG Y  G+  L  NE+     + EK L 
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379
Query: 111 L 111
           +
Sbjct: 380 V 380

>pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin Conjugation Factor E4a Length = 98

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 197 EDDTPAEVPDYLCCKITLDIFRDPVITPSG-VTYERAVILDHLDKVGKFDPITREPLRES 255
           E++T A+  D     I   +  DPV+ PS  VT +R+ I  HL    + DP  R PL   
Sbjct: 12  EEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHL-LSDQTDPFNRSPLTMD 70
Query: 256 QLVPNLAIKEAVRAYM 271
           Q+ PN  +KE ++ ++
Sbjct: 71  QIRPNTELKEKIQRWL 86

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 46/98 (46%)
Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
           +Q  +L+  GN   S      A+  Y+EAI L P+  + ++NR+  + K+ D+ K   D 
Sbjct: 2   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 61
Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKAL 109
            K + L  D  KG+      L   N + +  +  E+ L
Sbjct: 62  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	281
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	8e-92
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	9e-53
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	3e-41
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	2e-32
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-31
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	3e-31
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	5e-31
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	8e-30
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-28
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-28
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	4e-28
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-28
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	2e-27
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-27
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-27
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-06
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-26
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	1e-25
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-25
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-22
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-05
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-20
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	8e-20
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-19
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-10
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	2e-19
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-19
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-19
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-19
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-15
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-16
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-15
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	7e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-13
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-05
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-13
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-13
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	9e-13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-12
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-12
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-12
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-12
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-12
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-12
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-11
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-06
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	6e-11
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-10
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-11
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-09
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-11
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-09
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-09
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-10
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-07
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	6e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	4e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	2e-09
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-09
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-05
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	3e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	4e-07
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-06
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	6e-07
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	8e-07
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	2e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-06
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	9e-06
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	2e-05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	6e-05
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	7e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	8e-05
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	1e-04
1z6u_A	150	NP95-like ring finger protein isoform B; structura	2e-04
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	2e-04
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	4e-04
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	4e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	5e-04
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	7e-04

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  272 bits (697), Expect = 8e-92
 Identities = 94/281 (33%), Positives = 147/281 (52%), Gaps = 15/281 (5%)

Query: 11  AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD 70
           +  A++L+  GN  F   +Y  A   Y  AIT  P V +Y+TNRALC+LK     +  AD
Sbjct: 1   SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60

Query: 71  CRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELA 130
           CR+A++LD  SVK H+ LGQ  L+   Y + I  L++A +L +  +      +DI   L 
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN--FGDDIPSALR 118

Query: 131 RAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKEGFLDEASST---------- 180
            AK   W     +R  +   L       +  +   ++   +   +               
Sbjct: 119 IAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACI 178

Query: 181 ---HLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDH 237
              H K M  + ++F +  E     ++PDYLC KI+ ++ R+P ITPSG+TY+R  I +H
Sbjct: 179 EAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEH 238

Query: 238 LDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWAY 278
           L +VG F+P+TR PL + QL+PNLA+KE + A++ ++GW  
Sbjct: 239 LQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVE 279

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179

 Score =  169 bits (429), Expect = 9e-53
 Identities = 63/187 (33%), Positives = 94/187 (50%), Gaps = 19/187 (10%)

Query: 101 GIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAAL- 159
           GI    + LN G          +DI   L  AK   W     KR  +   L       + 
Sbjct: 1   GIDPFTQRLNFG----------DDIPSALRIAKKKRWNSIEEKRISQENELHAYLSKLIL 50

Query: 160 --------EEKHVLDISRKEGFLDEASSTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCK 211
                   +     D S+  G + +  S H K +  + ++F +  E     E+PDYLC K
Sbjct: 51  AEKERELDDRVKQSDDSQNGGDISKMKSKHDKYLMDMDELFSQVDEKRKKREIPDYLCGK 110

Query: 212 ITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYM 271
           I+ ++ R+P ITPSG+TY+R  I +HL +VG FDP+TR PL + QL+PNLA+KE + A++
Sbjct: 111 ISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI 170

Query: 272 DKHGWAY 278
            ++GW  
Sbjct: 171 QENGWVE 177

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  138 bits (349), Expect = 3e-41
 Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 2/134 (1%)

Query: 11  AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD 70
           +  A++L+  GN  F   +Y  A   Y  AIT  P V +Y+TNRALC+LK     +  AD
Sbjct: 6   SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 65

Query: 71  CRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELA 130
           CR+A++LD  SVK H+ LGQ  L+   Y + I  L++A +L +  +      +DI   L 
Sbjct: 66  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN--FGDDIPSALR 123

Query: 131 RAKYLLWEQESSKR 144
            AK   W     +R
Sbjct: 124 IAKKKRWNSIEERR 137

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78

 Score =  113 bits (285), Expect = 2e-32
 Identities = 27/74 (36%), Positives = 42/74 (56%)

Query: 202 AEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNL 261
            E P+Y  C I+L++ +DPVI  +G TYER+ I   LD   K  P ++E L  + L PN 
Sbjct: 3   PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNY 62

Query: 262 AIKEAVRAYMDKHG 275
            +K  +  + + +G
Sbjct: 63  VLKSLIALWCESNG 76

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  111 bits (281), Expect = 3e-31
 Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 2/126 (1%)

Query: 11  AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD 70
           + +AE+ RL+G  YF+K  +  A+ AYTE I   P     ++NRA    K   + +  AD
Sbjct: 1   SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 60

Query: 71  CRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL--GRGAKPKGYIVEDIWQE 128
           C KAI+ D + V+ +       +   EYA  ++ L+ A               ++ ++ +
Sbjct: 61  CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120

Query: 129 LARAKY 134
            ++ ++
Sbjct: 121 ASQQRF 126

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85

 Score =  110 bits (277), Expect = 3e-31
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 195 AAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRE 254
           +AE D  ++ PD     +   +  DPV  PSG   +R++IL HL      DP  R+ L E
Sbjct: 3   SAEIDY-SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTE 60

Query: 255 SQLVPNLAIKEAVRAYMDKHGWA 277
           S L P   +KE ++A+M +   +
Sbjct: 61  SMLEPVPELKEQIQAWMREKQSS 83

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score =  110 bits (277), Expect = 5e-31
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 186 EALRQVFRKAAEDD-TPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKF 244
           E + ++  K A  +   ++ PD     +   +  DPV  PSG   +R++IL HL      
Sbjct: 7   EKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPT 65

Query: 245 DPITREPLRESQLVPNLAIKEAVRAYMDKHGWA 277
           DP  R+ L ES L P   +KE ++A+M +   +
Sbjct: 66  DPFNRQTLTESMLEPVPELKEQIQAWMREKQNS 98

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  109 bits (274), Expect = 8e-30
 Identities = 27/101 (26%), Positives = 45/101 (44%)

Query: 11  AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD 70
             ++++L+ +GN   ++  Y  AID YT+A+++ P  PIY +NRA  +       K   D
Sbjct: 8   TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAED 67

Query: 71  CRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
              A  +D    K    LG       +Y    +  EK +  
Sbjct: 68  AELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score =  103 bits (260), Expect = 3e-28
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
            Q E+ +  GN  F +  Y  A+  Y + IT  P  P+ ++N+A+  +K  ++T+    C
Sbjct: 2   SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61

Query: 72  RKAIQLDHDSVKG------HYLLGQTLLQRNEYADGIKELEKAL 109
           ++ ++    +          Y L             + E+++  
Sbjct: 62  QQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  103 bits (260), Expect = 3e-28
 Identities = 27/100 (27%), Positives = 46/100 (46%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
           +Q  +L+  GN   S      A+  Y+EAI L P+  + ++NR+  + K+ D+ K   D 
Sbjct: 2   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 61

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            K + L  D  KG+      L   N + +  +  E+ L  
Sbjct: 62  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  103 bits (260), Expect = 4e-28
 Identities = 30/100 (30%), Positives = 49/100 (49%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
           + A++ +  GN YF K  Y  A+  Y EA+   P   I ++NRA C  K  ++ +   DC
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDC 70

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
              I+LD   +KG+      L+   E++   +  E AL +
Sbjct: 71  DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  103 bits (260), Expect = 4e-28
 Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 4/123 (3%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
             A  ++  GN  F K  Y  A+  YTEAI   P     ++NRA C+ K  ++     DC
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELAR 131
            + IQL+   +KG+      L    +Y   +   +KAL+L            D +Q    
Sbjct: 74  EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL----DSSCKEAADGYQRCMM 129

Query: 132 AKY 134
           A+Y
Sbjct: 130 AQY 132

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98

 Score =  101 bits (253), Expect = 2e-27
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 194 KAAEDDTPAEVPDYLCCKITLDIFRDPVITPSG-VTYERAVILDHLDKVGKFDPITREPL 252
           +  E++T A+  D     I   +  DPV+ PS  VT +R+ I  HL    + DP  R PL
Sbjct: 9   QQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPL 67

Query: 253 RESQLVPNLAIKEAVRAYMDKH 274
              Q+ PN  +KE ++ ++ + 
Sbjct: 68  TMDQIRPNTELKEKIQRWLAER 89

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  103 bits (258), Expect = 2e-27
 Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 3/125 (2%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
           K+AE+L+   N YF    Y  AI  Y++AI L P+  IY+ NR+L +L+   +     D 
Sbjct: 11  KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 70

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL---GRGAKPKGYIVEDIWQE 128
            +AI+LD   +KG+Y    + +   ++   +++ E  + +    + AK K      I ++
Sbjct: 71  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ 130

Query: 129 LARAK 133
            A  +
Sbjct: 131 KAFER 135

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  101 bits (254), Expect = 3e-27
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 7/125 (5%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
            +AE+L+ +GN     + + AA+  Y +AI L P   +Y+ NRA  + K  ++     DC
Sbjct: 10  AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDC 69

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELAR 131
            +AI +D    K +  +G  L   N++ + +   +KAL L     P     E     L  
Sbjct: 70  ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL----DPD---NETYKSNLKI 122

Query: 132 AKYLL 136
           A+  L
Sbjct: 123 AELKL 127

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 17/74 (22%), Positives = 26/74 (35%)

Query: 24  YFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK 83
           Y     Y  A+     AI + P     +    L     N   +  A  +KA++LD D+  
Sbjct: 56  YSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNET 115

Query: 84  GHYLLGQTLLQRNE 97
               L    L+  E
Sbjct: 116 YKSNLKIAELKLRE 129

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 99.7 bits (249), Expect = 2e-26
 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 15/137 (10%)

Query: 11  AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD 70
            KQA + +  GN  + K  +  A+  Y +A  L P    Y TN+A  + ++ D+ K    
Sbjct: 1   GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60

Query: 71  CRKAIQLDHDS-------VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVE 123
           C KAI++  ++        K +  +G +  +  +Y D I    K+L   R          
Sbjct: 61  CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--------P 112

Query: 124 DIWQELARAKYLLWEQE 140
           D+ ++  +A+ +L EQE
Sbjct: 113 DVLKKCQQAEKILKEQE 129

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968

 Score =  105 bits (262), Expect = 1e-25
 Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 11/171 (6%)

Query: 114 GAKPKGYIVE--DIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKE 171
              PK  +     ++  L+     +      +RS+       A +    +  +      E
Sbjct: 803 SFNPKDLLKALTTVYINLSEQSEFISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIE 862

Query: 172 GFLDEASSTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITP-SGVTYE 230
             L+        + E  R+   +   +    +VPD     +   I +DPVI P S +  +
Sbjct: 863 KLLN-----FANKAEEQRKADEEEDLE--YGDVPDEFLDPLMYTIMKDPVILPASKMNID 915

Query: 231 RAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWAYKAS 281
           R+ I  HL      DP  R PL+   + PN  +++ +  +  +     K  
Sbjct: 916 RSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKEEAKHK 965

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 97.4 bits (243), Expect = 2e-25
 Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 11  AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCP---NVPIYWTNRALCHLKRNDWTKV 67
           A   EQLR +GN  F    YG A+ AYT+A+ L     +  +   NRA CHLK  D+ K 
Sbjct: 25  ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKA 84

Query: 68  EADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           E +  KAI+ D   VK  Y   Q L +       + +L++ ++L
Sbjct: 85  ETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 88.5 bits (220), Expect = 2e-22
 Identities = 18/108 (16%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 11  AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD 70
              A   +  GN  + +  +  A   Y +AI L P+   ++ N+A  + +   + +    
Sbjct: 5   TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64

Query: 71  CRKAIQLDHDS-------VKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           C KA+++  ++        K     G    ++N+ +  ++   ++L+ 
Sbjct: 65  CEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 22/94 (23%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIY-------WTNRALCHLKRNDWTKVEADCRK 73
              YF + ++   +    +A+ +               +       K+ND +       +
Sbjct: 49  AAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHR 108

Query: 74  AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEK 107
           ++    D                E    +KELEK
Sbjct: 109 SLSEFRD---------------PELVKKVKELEK 127

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 89.0 bits (221), Expect = 3e-20
 Identities = 30/101 (29%), Positives = 54/101 (53%)

Query: 11  AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD 70
            K+AE+L+   N YF    Y  AI  Y++AI L P+  IY+ NR+L +L+   +     D
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD 62

Query: 71  CRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
             +AI+LD   +KG+Y    + +   ++   +++ E  + +
Sbjct: 63  ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 103

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 82.8 bits (205), Expect = 8e-20
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 18/118 (15%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP------------------IYWTN 53
           K  E LR  GN  F +  Y  AIDAY +A+T    +                     + N
Sbjct: 9   KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68

Query: 54  RALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            + C+L   D  + E    + ++ +  + K  +   +  +   +  +  ++L+  L  
Sbjct: 69  MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 25/132 (18%), Positives = 43/132 (32%), Gaps = 11/132 (8%)

Query: 9   GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWT----NRALCHLKRNDW 64
              K+  +L           RY  A   Y   +   P+V  Y          C  K    
Sbjct: 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP 288

Query: 65  TKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVED 124
            +    C + +Q++ D+V       +  L    Y + I++ E A              + 
Sbjct: 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH----NEN---DQQ 341

Query: 125 IWQELARAKYLL 136
           I + L +A+ LL
Sbjct: 342 IREGLEKAQRLL 353

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 83.1 bits (206), Expect = 2e-18
 Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 7/150 (4%)

Query: 14  AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73
            E+    G    +  +   A+  +  A+   P+  I +  RA   L          D  K
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 74  AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAK 133
            I L  D        G  LL++ +  +   + +K L       P     ++   +L +A 
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS----NPSEQEEKEAESQLVKAD 118

Query: 134 YLLWEQESSKRSWELQSLKEA---CEAALE 160
            +   +  +  +++      A    +  LE
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILE 148

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 80.8 bits (200), Expect = 1e-17
 Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 10/158 (6%)

Query: 6   GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWT 65
                A + ++LR      F    Y AAI    + + +C         RA C +K  +  
Sbjct: 112 SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPR 171

Query: 66  KVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDI 125
           K  +D + A +L  D+ +  Y +     Q  ++   + E+ + L L              
Sbjct: 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL----DQDHK---RC 224

Query: 126 WQELARAKYLLWEQESSKRSWELQSLKEACEA---ALE 160
           +    + K L    ES++         +A       ++
Sbjct: 225 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 15/106 (14%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNR---------------ALCHLKRNDWT 65
           G+    + +   A D + + +   P+                       AL      D+T
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137

Query: 66  KVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
                  K +++     +   L  +  ++  E    I +L+ A  L
Sbjct: 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 183

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 78.9 bits (195), Expect = 2e-19
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 207 YLCCKITLDIFRDPVITP-SGVTYERAVILDHLDKVGKFDPITREPLRESQLVP 259
           ++ C I+  + R PV++P S   +E++++  ++   G  DPIT EPL   ++V 
Sbjct: 3   HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN-DPITNEPLSIEEIVE 55

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 82.9 bits (205), Expect = 2e-19
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 16/116 (13%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP----------------IYWTNRA 55
           + A  ++ +GN +F K+    AI  Y EA+    +                      N A
Sbjct: 36  QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95

Query: 56  LCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            C+ K  D+ K      K +++D ++VK  Y LG   +      +  + L KA +L
Sbjct: 96  TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 84.9 bits (210), Expect = 3e-19
 Identities = 38/208 (18%), Positives = 70/208 (33%), Gaps = 33/208 (15%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP---------------IYWTNRAL 56
           +Q+  ++  G  YF + +Y  A+  Y + ++                         N A+
Sbjct: 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204

Query: 57  CHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK 116
           CHLK   ++     C KA++LD ++ KG    G+  L  N++     + +K L L     
Sbjct: 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL----Y 260

Query: 117 PKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKEGFLDE 176
           P     +    +LA  +  +  Q            K+      E     +   K    + 
Sbjct: 261 PN---NKAAKTQLAVCQQRIRRQL--------AREKKLYANMFERLAEEENKAKA---EA 306

Query: 177 ASSTHLKQMEALRQVFRKAAEDDTPAEV 204
           +S  H    E   +     A   +  E 
Sbjct: 307 SSGDHPTDTEMKEEQKSNTAGSQSQVET 334

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 83.4 bits (207), Expect = 4e-19
 Identities = 32/100 (32%), Positives = 51/100 (51%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
           ++AE+ RL+G  YF+K  +  A+ AYTE I   P     ++NRA    K   + +  ADC
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            KAI+ D + V+ +       +   EYA  ++ L+ A   
Sbjct: 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 72.6 bits (179), Expect = 3e-15
 Identities = 15/100 (15%), Positives = 44/100 (44%), Gaps = 1/100 (1%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
             A++ + +GN ++   ++  AI+ Y +A  L  +   Y  NRA    ++ ++    +  
Sbjct: 3   SMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD-ITYLNNRAAAEYEKGEYETAISTL 61

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
             A++   +    + ++ ++  +       + +L+K +  
Sbjct: 62  NDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEY 101

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 61.8 bits (151), Expect = 2e-11
 Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 1/91 (1%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
               + K  Y  AI    +A+     +   +   +    +  +      D +K I+    
Sbjct: 45  AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK 104

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           S+  H      L +       +K+ E    +
Sbjct: 105 SLTEHR-TADILTKLRNAEKELKKAEAEAYV 134

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 57.9 bits (141), Expect = 4e-10
 Identities = 9/91 (9%), Positives = 25/91 (27%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
            +           +        + P            +  ++DW        + I+   +
Sbjct: 112 ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE 171

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
             +G+      L +   + + I +  KA+  
Sbjct: 172 DARGYSNRAAALAKLMSFPEAIADCNKAIEK 202

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 56.8 bits (138), Expect = 9e-10
 Identities = 11/78 (14%), Positives = 19/78 (24%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
                    +  AI    +AI   PN    +  +A   +   ++         A   D +
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 239

Query: 81  SVKGHYLLGQTLLQRNEY 98
              G        L     
Sbjct: 240 VNNGSSAREIDQLYYKAS 257

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 7/91 (7%), Positives = 24/91 (26%), Gaps = 1/91 (1%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
              +         +    + I             A    K  +  K          ++ +
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPE 137

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
             +   L G+    ++++ + +K   + +  
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 168

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 84.0 bits (208), Expect = 2e-18
 Identities = 24/132 (18%), Positives = 43/132 (32%), Gaps = 11/132 (8%)

Query: 9   GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWT----NRALCHLKRNDW 64
              K+  +L           RY  A   Y   +   P++  Y          C  K    
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311

Query: 65  TKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVED 124
            +    C + +Q++ D+V       +  L    Y + I++ E A              + 
Sbjct: 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND-------QQ 364

Query: 125 IWQELARAKYLL 136
           I + L +A+ LL
Sbjct: 365 IREGLEKAQRLL 376

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 83.6 bits (207), Expect = 2e-18
 Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 7/152 (4%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
              E+    G    +  +   A+  +  A+   P+  I +  RA   L          D 
Sbjct: 24  ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 83

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELAR 131
            K IQL  D        G  LL++ +  +   + +K L       P     ++   +L +
Sbjct: 84  TKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS----NPSENEEKEAQSQLIK 139

Query: 132 AKYLLWEQESSKRSWELQSLKEA---CEAALE 160
           +  +   +  +  ++       A    +  LE
Sbjct: 140 SDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 171

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 79.7 bits (197), Expect = 4e-17
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 7/152 (4%)

Query: 6   GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWT 65
                + + ++LR      F    Y AAI    + + +C         RA C +K  +  
Sbjct: 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPR 194

Query: 66  KVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDI 125
           K  +D + A +L +D+ +  Y +     Q  ++   + E+ + L L           +  
Sbjct: 195 KAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL----DQDH---KRC 247

Query: 126 WQELARAKYLLWEQESSKRSWELQSLKEACEA 157
           +    + K L    ES++         +A   
Sbjct: 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSK 279

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 58.2 bits (141), Expect = 8e-10
 Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 2/96 (2%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
            + +   ++   AI   +E + + P+      +RA  +L    + +   D   A + + +
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK 116
             +    L +      +     ++  K L + R AK
Sbjct: 362 DQQIREGLEKAQRLLKQSQ--KRDYYKILGVKRNAK 395

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 81.7 bits (202), Expect = 9e-18
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 1/98 (1%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
           K A  L+  GN +F   +Y  AI  Y  A+ L  + P++++N + C++   D  KV    
Sbjct: 4   KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMS 62

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKAL 109
            KA++L  D  K             ++AD + +L    
Sbjct: 63  TKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLS 100

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 72.5 bits (178), Expect = 1e-14
 Identities = 25/143 (17%), Positives = 53/143 (37%), Gaps = 13/143 (9%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G   F    Y  A   + +A  L P     +   A    + N +   E    +A +   +
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQE 140
           + +      + L  +N++   +K+ + A+ L    + K      I+  +A    L+ +  
Sbjct: 371 APEVPNFFAEILTDKNDFDKALKQYDLAIEL----ENKLD---GIYVGIA---PLVGKAT 420

Query: 141 SSKRSWELQSLKEA---CEAALE 160
              R+  +++  EA    E A +
Sbjct: 421 LLTRNPTVENFIEATNLLEKASK 443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 72.5 bits (178), Expect = 1e-14
 Identities = 13/91 (14%), Positives = 34/91 (37%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
                 ++      + + +A+ L  N    + +R   +    ++ +   D  KA +LD +
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           ++  +  L     + N++ D      +A   
Sbjct: 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRK 367

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 71.3 bits (175), Expect = 4e-14
 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 9/109 (8%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKR---------N 62
           +  E           K+ +  A+  Y  AI L   +   +   A    K           
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429

Query: 63  DWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           ++ +      KA +LD  S +    L Q  LQ+ +  + I   E++ +L
Sbjct: 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 68.6 bits (168), Expect = 2e-13
 Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
           K A  L   G + F K+    A +   +AI L P V  Y    AL    RND T+     
Sbjct: 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY-IYMALIMADRNDSTEYYNYF 293

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            KA++LD ++   +Y  GQ       Y    K+ +KA  L
Sbjct: 294 DKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL 333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 1/103 (0%)

Query: 11  AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD 70
                  + D ++  +   +   +D   E   L   + I   +  +    +ND      D
Sbjct: 200 RSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHED 259

Query: 71  CRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGR 113
            +KAI+L    V  +  +   +  RN+  +     +KAL L  
Sbjct: 260 IKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDS 301

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 8/76 (10%), Positives = 22/76 (28%)

Query: 22  NYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81
               + + +  A +   +A  L P         A   L++ D  +      ++  L    
Sbjct: 423 TRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482

Query: 82  VKGHYLLGQTLLQRNE 97
            +    +      + +
Sbjct: 483 EEKLQAITFAEAAKVQ 498

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 4/144 (2%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK-AIQLDH 79
              Y S       ++  T+A+ L P+       RA  +     +     D    ++  D 
Sbjct: 46  SACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF 105

Query: 80  D--SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLW 137
           +  S++            ++  +   +++ A         +        QE   +   + 
Sbjct: 106 NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165

Query: 138 EQESSKRSWE-LQSLKEACEAALE 160
                 +      +  E+ EA  E
Sbjct: 166 SFFGIFKPELTFANYDESNEADKE 189

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 80.2 bits (198), Expect = 3e-17
 Identities = 27/99 (27%), Positives = 45/99 (45%)

Query: 14  AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73
           A QL+  GN++F+   +  AI  Y  AI L PN P++++N + C++   D  KV     K
Sbjct: 25  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84

Query: 74  AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLG 112
           A+++  D  K              + D + +L      G
Sbjct: 85  ALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNG 123

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 19/91 (20%), Positives = 34/91 (37%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G  YF    Y  A + + +A +L P     +   A    K+  +T+ EA   +       
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
             +      + L  R ++   IK+ + A  L
Sbjct: 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 69.0 bits (169), Expect = 2e-13
 Identities = 14/91 (15%), Positives = 34/91 (37%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
                 K+        + +A+ L P  P  + +R   +    D+   + D +KA  L+ +
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           +V  +  L   L ++ ++ +      +    
Sbjct: 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLK 373

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 68.6 bits (168), Expect = 2e-13
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 1/100 (1%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
             A  L   G ++F K+    A     E+I L P  P  +   AL    + +  +     
Sbjct: 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFF 299

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           +KA+ L+ +    +Y  GQ      +Y +  ++ +KA +L
Sbjct: 300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 1/101 (0%)

Query: 11  AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD 70
           A     L  +     S D Y + + A T    L  N  +      + H  +N+    +  
Sbjct: 206 ATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVL 265

Query: 71  CRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            +++I L       +  L  TL  +    +  K  +KA++L
Sbjct: 266 LQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL 305

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 4/87 (4%)

Query: 29  RYGAAIDAYTEAITLCPNVP----IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG 84
            +        +   L P+      +   NR        ++ +     + AI+LD +    
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61

Query: 85  HYLLGQTLLQRNEYADGIKELEKALNL 111
           +  +    +   +    I+   KAL +
Sbjct: 62  YSNISACYISTGDLEKVIEFTTKALEI 88

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 11/89 (12%), Positives = 23/89 (25%)

Query: 11  AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD 70
           A    +          ++++ AAI   T+A  L P         A   L+     +    
Sbjct: 425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484

Query: 71  CRKAIQLDHDSVKGHYLLGQTLLQRNEYA 99
              +  L     +           + +  
Sbjct: 485 FEDSAILARTMDEKLQATTFAEAAKIQKR 513

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 73.6 bits (181), Expect = 1e-16
 Identities = 13/99 (13%), Positives = 26/99 (26%)

Query: 13  QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72
             EQL   G   +   ++  A   +     L      Y+     C      + +      
Sbjct: 17  TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYS 76

Query: 73  KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
               +D +  +  +   +  LQ  +          A  L
Sbjct: 77  YGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 15/61 (24%), Positives = 23/61 (37%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G    S   Y  A+ +Y+    +  N P +  + A CHL+  D    E+    A  L   
Sbjct: 59  GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118

Query: 81  S 81
            
Sbjct: 119 Q 119

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 8/76 (10%), Positives = 16/76 (21%)

Query: 36  AYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQR 95
                  L  +             +   W   +   +    LDH   +    LG      
Sbjct: 6   TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65

Query: 96  NEYADGIKELEKALNL 111
             Y   ++       +
Sbjct: 66  GLYEQALQSYSYGALM 81

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 75.1 bits (184), Expect = 1e-15
 Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 17/117 (14%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIY-----------------WTNR 54
             A++ ++DGN  F +++   A+  Y  AI    +  ++                   N 
Sbjct: 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNI 236

Query: 55  ALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           A C +K   + +    C   +  +  + K  +  G+   +  +      +  KA   
Sbjct: 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 73.2 bits (179), Expect = 7e-15
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 15/115 (13%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIY---------------WTNRAL 56
           +QA  ++  G  YF   +Y  A+  Y + ++                       + N A+
Sbjct: 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325

Query: 57  CHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           C+LK  ++TK    C KA+ LD  + KG Y  G+  L  NE+     + EK L +
Sbjct: 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 72.6 bits (179), Expect = 8e-15
 Identities = 19/91 (20%), Positives = 36/91 (39%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
            N    K     A D Y  A+ LCP       N A    ++ +  +     RKA+++  +
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
               H  L   L Q+ +  + +   ++A+ +
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 72.6 bits (179), Expect = 8e-15
 Identities = 19/100 (19%), Positives = 36/100 (36%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
                L L  + +F   R   +    T AI   P +   ++N    + +R    +     
Sbjct: 31  DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           R A++L  D + G+  L   L+   +    ++    AL  
Sbjct: 91  RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY 130

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 69.5 bits (171), Expect = 1e-13
 Identities = 21/91 (23%), Positives = 35/91 (38%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           GN       +  A+ AY  A++L PN  +   N A  + ++          R+AI+L   
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
               +  L   L ++   A+       AL L
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRL 300

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 68.3 bits (168), Expect = 2e-13
 Identities = 17/91 (18%), Positives = 30/91 (32%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
                +      A+ AY  A+   P++    ++            + +A   KAI+   +
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
                  LG     + E    I   EKA+ L
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 67.6 bits (166), Expect = 4e-13
 Identities = 21/91 (23%), Positives = 36/91 (39%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           GN   +  R   A   Y +AI   PN  + W+N       + +         KA+ LD +
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            +  +  LG  L +   +   +    +AL+L
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSL 232

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 67.6 bits (166), Expect = 4e-13
 Identities = 20/91 (21%), Positives = 31/91 (34%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           GN Y  + +   AI+ Y  A+ L P+    + N A   +   D          A+Q + D
Sbjct: 74  GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
                  LG  L       +      KA+  
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIET 164

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 67.6 bits (166), Expect = 5e-13
 Identities = 17/91 (18%), Positives = 34/91 (37%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G  + ++     AI  + +A+TL PN    + N      +   + +  A   +A+ L  +
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
               H  L     ++      I    +A+ L
Sbjct: 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 67.6 bits (166), Expect = 5e-13
 Identities = 19/91 (20%), Positives = 34/91 (37%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
              Y+ +     AID Y  AI L P+ P  + N A    ++    + E     A++L   
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
                  L     ++    + ++   KAL +
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEV 334

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.2 bits (152), Expect = 3e-11
 Identities = 13/91 (14%), Positives = 29/91 (31%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
            +  +    + AA     +     P+        +  H +     +       AI+ +  
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
             + +  LG    +R +  + I+    AL L
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAIEHYRHALRL 96

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.0 bits (136), Expect = 3e-09
 Identities = 12/77 (15%), Positives = 29/77 (37%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
            N    +     A+  Y +A+ + P      +N A    ++    +     ++AI++   
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371

Query: 81  SVKGHYLLGQTLLQRNE 97
               +  +G TL +  +
Sbjct: 372 FADAYSNMGNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.1 bits (118), Expect = 5e-07
 Identities = 9/61 (14%), Positives = 16/61 (26%)

Query: 51  WTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALN 110
               A    +  D+   E  C +  + + D+     LL     Q             A+ 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 111 L 111
            
Sbjct: 62  Q 62

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 65.7 bits (160), Expect = 1e-13
 Identities = 16/100 (16%), Positives = 26/100 (26%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
              EQL       +    Y  A   +     L      ++     C      +       
Sbjct: 19  DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSY 78

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
                +D    +  +   + LLQ  E A+    L  A  L
Sbjct: 79  SYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 9/83 (10%), Positives = 19/83 (22%)

Query: 29  RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL 88
             G+          +  +      + A    +   +       +    LDH   +    L
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 89  GQTLLQRNEYADGIKELEKALNL 111
           G       +Y   I        +
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVM 84

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 68.6 bits (168), Expect = 2e-13
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 25/139 (17%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAI---TLCPN--------------VPIYWTNR 54
             +E L+  GN +F    +  AI  YT+ +                      +     N 
Sbjct: 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCV-LNI 279

Query: 55  ALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG 114
             C LK +DW      C +A+++D  + K  Y   Q      EY   + +L+KA  +   
Sbjct: 280 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339

Query: 115 AKPKGYIVEDIWQELARAK 133
            K        I  EL + K
Sbjct: 340 DK-------AIQAELLKVK 351

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 68.3 bits (167), Expect = 3e-13
 Identities = 15/120 (12%), Positives = 28/120 (23%), Gaps = 7/120 (5%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
            +         A   A    + L P  P            +    +     ++A     +
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQE 140
                  LG  L    +         +A  L     P+      I  +L   +  L +  
Sbjct: 90  HPGIALWLGHALEDAGQAEAAAAAYTRAHQL----LPE---EPYITAQLLNWRRRLCDWR 142

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 61.8 bits (150), Expect = 5e-11
 Identities = 14/83 (16%), Positives = 28/83 (33%)

Query: 29  RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL 88
                +     A+   P   + W   A   L   D T  E   ++ + L     +    L
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 89  GQTLLQRNEYADGIKELEKALNL 111
           G+    +  +A+    L++A + 
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDA 86

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 3/116 (2%)

Query: 3   LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN 62
           ++ GLA      E +   G   +++ R+  A     +A    P  P              
Sbjct: 46  VQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG 105

Query: 63  DWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ---RNEYADGIKELEKALNLGRGA 115
                 A   +A QL  +       L     +            ++  A+  G GA
Sbjct: 106 QAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 67.9 bits (166), Expect = 4e-13
 Identities = 19/116 (16%), Positives = 37/116 (31%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
            + +  +  +  AI AYT A  L     + +    + H++  +        + +  L   
Sbjct: 414 AHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY 473

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLL 136
                  LG     +++    I   + AL L +  +         W  L  A   L
Sbjct: 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 65.2 bits (159), Expect = 4e-12
 Identities = 18/140 (12%), Positives = 45/140 (32%), Gaps = 12/140 (8%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G YY   ++   A   ++++ T+ P     W   A       +  +  +    A +L   
Sbjct: 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQE 140
           +   +  LG   +Q        + L+ +  L         ++     EL    +   + +
Sbjct: 440 THLPYLFLGMQHMQLGNILLANEYLQSSYAL----FQYDPLL---LNELGVVAFNKSDMQ 492

Query: 141 SSKRSWELQSLKEACEAALE 160
           ++     +   + A     +
Sbjct: 493 TA-----INHFQNALLLVKK 507

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 61.4 bits (149), Expect = 7e-11
 Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 7/98 (7%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLC-------PNVPIYWTNRALCHLKRNDWTKVEADCRK 73
           G   F+K     AI+ +  A+ L              W N    + K   +        +
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541

Query: 74  AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            + L  +    H  +    L +      I  L ++L +
Sbjct: 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 10/91 (10%), Positives = 21/91 (23%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
                             + +   P   + W    + +L  N  ++      K+  +D  
Sbjct: 346 LASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
                     +     E+   I     A  L
Sbjct: 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 58.3 bits (141), Expect = 8e-10
 Identities = 17/72 (23%), Positives = 29/72 (40%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G+ Y     Y AAIDA  + + L  N     T  AL +L +           +++ +  +
Sbjct: 523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582

Query: 81  SVKGHYLLGQTL 92
            +    LL + L
Sbjct: 583 EIMASDLLKRAL 594

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 9/91 (9%), Positives = 29/91 (31%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
            +  F + R+   +   T+ + + P     +        +  +  K+       +    +
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
                  +G   L  N+ ++  +   K+  +
Sbjct: 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTM 402

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 14/101 (13%), Positives = 31/101 (30%)

Query: 11  AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD 70
           A     L +      S +      + Y  +I            +A     R+ +  V A 
Sbjct: 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAI 327

Query: 71  CRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
             K +++D  ++  + L   +L +  E           ++ 
Sbjct: 328 TTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 3/102 (2%)

Query: 13  QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEA--- 69
           +A    L G  Y +   +  A + Y EA+ +       +      HL   D         
Sbjct: 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKL 258

Query: 70  DCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           +     + D   ++  Y+L        +     ++   ++N 
Sbjct: 259 NYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 2/95 (2%)

Query: 15  EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKA 74
           + LRL  +    + +Y  A     + + +  N P      A  +    D+ + +    K 
Sbjct: 85  DYLRLWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKE 143

Query: 75  IQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKAL 109
             L + S    YL    L++  ++   +  L +  
Sbjct: 144 D-LYNRSSACRYLAAFCLVKLYDWQGALNLLGETN 177

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 63.7 bits (155), Expect = 9e-13
 Identities = 11/100 (11%), Positives = 26/100 (26%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
              + +      +++K R   A   +            Y    A  +  +  + +     
Sbjct: 34  DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLY 93

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
             A  L  +     +  GQ  L+        +  E  +  
Sbjct: 94  AVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 14/61 (22%), Positives = 21/61 (34%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
              Y  K+++  A D Y  A  L  N      +   C L+     K +      IQ  +D
Sbjct: 77  AAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136

Query: 81  S 81
            
Sbjct: 137 E 137

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 8/76 (10%), Positives = 19/76 (25%)

Query: 36  AYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQR 95
              +   +  ++     + A     +    + E   R     D  +V     L      +
Sbjct: 24  TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK 83

Query: 96  NEYADGIKELEKALNL 111
            ++         A  L
Sbjct: 84  EQFQQAADLYAVAFAL 99

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 16/117 (13%)

Query: 11  AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN----------------VPIYWTNR 54
            +  +++    +      + G A+  + + I L  +                     T  
Sbjct: 1   GQSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATEL 60

Query: 55  ALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           AL + K  ++ K     ++ +Q   ++V       +  + R +  D ++  EK L L
Sbjct: 61  ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 22/128 (17%), Positives = 36/128 (28%), Gaps = 8/128 (6%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
              Y     Y  A   Y E +   PN        A   + R           K +QL+ D
Sbjct: 61  ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120

Query: 81  SVKGHYLLGQTLLQRNEYADG-IKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQ 139
           ++  +  LG       E     ++   K L+       K             +K      
Sbjct: 121 NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS----PTKMQ---YARYRDGLSKLFTTRY 173

Query: 140 ESSKRSWE 147
           E ++ S +
Sbjct: 174 EKARNSLQ 181

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 1/92 (1%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRA-LCHLKRNDWTKVEADCRKAIQLDH 79
                 + +   A+  Y + + L  +            +L      K      K +    
Sbjct: 95  AEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154

Query: 80  DSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
                 Y  G + L    Y      L+K +  
Sbjct: 155 KMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 2/79 (2%)

Query: 21  GNYYFSK-DRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH 79
           GNYY+   ++    ++   + ++    +        L  L    + K     +K I    
Sbjct: 129 GNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188

Query: 80  DSVKGHYLLGQTLLQRNEY 98
            + +    L + L    E 
Sbjct: 189 ST-EAQKTLDKILRIEKEV 206

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 66.4 bits (161), Expect = 2e-12
 Identities = 34/215 (15%), Positives = 58/215 (26%), Gaps = 14/215 (6%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
            +    + +   A+  Y EAI + P     ++N      +  D         +AIQ++  
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQE 140
               H  L           + I     AL L    KP            A        Q 
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKL----KP--------DFPDAYCNLAHCLQI 157

Query: 141 SSKRSWELQSLKEACE--AALEEKHVLDISRKEGFLDEASSTHLKQMEALRQVFRKAAED 198
               +   + +K+     A   EK+ L        +    S   ++  A R       + 
Sbjct: 158 VCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKI 217

Query: 199 DTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAV 233
           +   + P      + L   R  V   S        
Sbjct: 218 NVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPT 252

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 59.8 bits (144), Expect = 2e-10
 Identities = 16/106 (15%), Positives = 39/106 (36%)

Query: 6   GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWT 65
           G       A+ L    N    +     A+  Y +A+ + P      +N A    ++    
Sbjct: 1   GPGSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 60

Query: 66  KVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           +     ++AI++       +  +G TL +  +    ++   +A+ +
Sbjct: 61  EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 106

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 18/87 (20%), Positives = 32/87 (36%)

Query: 14  AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73
           A+      + +        AI +Y  A+ L P+ P  + N A C     DWT  +   +K
Sbjct: 111 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKK 170

Query: 74  AIQLDHDSVKGHYLLGQTLLQRNEYAD 100
            + +  D ++ + L          Y  
Sbjct: 171 LVSIVADQLEKNRLPSVHPHHSMLYPL 197

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 23/164 (14%), Positives = 51/164 (31%), Gaps = 20/164 (12%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G  Y S      A + +++A+ + P++P  +    +   +  ++          ++LD  
Sbjct: 50  GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQE 140
               H   G  L           +L           P           L  A+  L E++
Sbjct: 110 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD----DPN---DPFRSLWLYLAEQKLDEKQ 162

Query: 141 SSKRSWELQSLKEACEAALEEK-------HVLDISRKEGFLDEA 177
                   + LK+  E + +E+         L    ++  ++  
Sbjct: 163 ------AKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERL 200

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 10/87 (11%), Positives = 23/87 (26%), Gaps = 4/87 (4%)

Query: 29  RYGAAIDAYTEAITLC----PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG 84
           +    +    + +                R + +           D  +A+ +  D  + 
Sbjct: 20  QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 79

Query: 85  HYLLGQTLLQRNEYADGIKELEKALNL 111
              LG  L Q   +    +  +  L L
Sbjct: 80  FNYLGIYLTQAGNFDAAYEAFDSVLEL 106

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 10/81 (12%), Positives = 24/81 (29%)

Query: 27  KDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHY 86
           +          T+  +L  ++          +L   D     A  + A+  +  +   H 
Sbjct: 194 QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 253

Query: 87  LLGQTLLQRNEYADGIKELEK 107
                L    +  D + E ++
Sbjct: 254 YALLELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 11/94 (11%), Positives = 25/94 (26%), Gaps = 4/94 (4%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNR--ALCHLKRN-DWTKVEADCRKAIQL 77
                  D   A  +   +           W      L ++       +++AD      L
Sbjct: 152 YLAEQKLDEKQA-KEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSL 210

Query: 78  DHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
                + ++ LG+  L   +        + A+  
Sbjct: 211 AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 18/91 (19%), Positives = 25/91 (27%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G     K +   AI  Y  A+         +         + ++        K I+    
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT 140

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
             K  Y LGQ      EY        K L L
Sbjct: 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 14/94 (14%), Positives = 38/94 (40%), Gaps = 3/94 (3%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC---RKAIQL 77
            ++ F  + Y  AI+ + +      N P  +  RA+C+ +   +   + D       +  
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA 69

Query: 78  DHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
                      G+ L+++ + +  I++ + A++ 
Sbjct: 70  TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 11/94 (11%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 21  GNYYFSKDRYGAAI---DAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL 77
              Y+   +Y  A    + Y   +         +       +K+   +      + A+  
Sbjct: 44  AVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103

Query: 78  DHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           D   +  +  +G     +  +   I+ +EK +  
Sbjct: 104 DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 8/80 (10%)

Query: 27  KDRYGAAIDAYTEAITLCPNVPIY--------WTNRALCHLKRNDWTKVEADCRKAIQLD 78
             + G A   Y + I +C                  A  +    D  K +A  +  + LD
Sbjct: 192 DTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251

Query: 79  HDSVKGHYLLGQTLLQRNEY 98
             + K    L   L   + +
Sbjct: 252 PTNKKAIDGLKMKLEHHHHH 271

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 3/64 (4%)

Query: 51  WTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELE---K 107
               A    K N++ +      K     ++S   +        +  +Y    K++E    
Sbjct: 6   EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65

Query: 108 ALNL 111
            +N 
Sbjct: 66  KVNA 69

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 64.1 bits (157), Expect = 3e-12
 Identities = 13/91 (14%), Positives = 28/91 (30%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G      ++   A+     A+ L  N         +C        +  +      + D  
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
                Y  G T   +      ++ L+KA+++
Sbjct: 192 HADAFYNAGVTYAYKENREKALEMLDKAIDI 222

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 63.3 bits (155), Expect = 5e-12
 Identities = 15/91 (16%), Positives = 39/91 (42%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
            N   S +    A+  Y +A+ L  +    +      ++ +  + + +    KA++   +
Sbjct: 64  ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME 123

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           +    Y+LG  L++  +    +  L++A+ L
Sbjct: 124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 62.9 bits (154), Expect = 7e-12
 Identities = 13/91 (14%), Positives = 30/91 (32%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           GN Y  K+ Y  A D + +A+         +       +K           ++A++L+ +
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
             +  +  G  L       + + +       
Sbjct: 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 61.8 bits (151), Expect = 1e-11
 Identities = 22/91 (24%), Positives = 35/91 (38%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
                    Y  A +A+T+AI       I + N A      N+  +  A   KA++LD  
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS 89

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           +   +Y  G   + +  Y +     EKAL  
Sbjct: 90  AATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 54.1 bits (131), Expect = 6e-09
 Identities = 9/78 (11%), Positives = 23/78 (29%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G    ++     A+  +       P     + N  + +  + +  K      KAI +  D
Sbjct: 166 GMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225

Query: 81  SVKGHYLLGQTLLQRNEY 98
            +   +         + +
Sbjct: 226 HMLALHAKKLLGHHHHHH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 51.4 bits (124), Expect = 6e-08
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 4/85 (4%)

Query: 31  GAAIDAYTEAITLCPNVPIYWTNRALCHLKR----NDWTKVEADCRKAIQLDHDSVKGHY 86
           G++   +  +  L P      +      + R     D+ K      KAI+ + +    + 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61

Query: 87  LLGQTLLQRNEYADGIKELEKALNL 111
                L   NE    +   +KAL L
Sbjct: 62  NFANLLSSVNELERALAFYDKALEL 86

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 63.4 bits (155), Expect = 4e-12
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 2/93 (2%)

Query: 21  GNYYFSKDRYGAAIDAYTEAI--TLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD 78
           G + + + RY  A     EA   TL P     + N  L  L+     + +    K+++L+
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171

Query: 79  HDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            +       +   L +  EY    +  +     
Sbjct: 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQG 204

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 15/89 (16%), Positives = 32/89 (35%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G  Y  +     A     +A+ + P+        A+      +    + + RKA+  D  
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKAL 109
           + +     G  L ++  Y +  + L +A 
Sbjct: 104 NARVLNNYGGFLYEQKRYEEAYQRLLEAS 132

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 15/81 (18%), Positives = 26/81 (32%)

Query: 31  GAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ 90
                   +           +    L +L+R +  + +   RKA+++D  S   H  L  
Sbjct: 20  HMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAV 79

Query: 91  TLLQRNEYADGIKELEKALNL 111
                 E     +E  KAL  
Sbjct: 80  VFQTEMEPKLADEEYRKALAS 100

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 13/89 (14%), Positives = 24/89 (26%), Gaps = 1/89 (1%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G       +   A + + +++ L  N P      A    K  ++           Q    
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKAL 109
           + +   L    L +  E  D        L
Sbjct: 208 NARSLLLGI-RLAKVFEDRDTAASYGLQL 235

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 62.2 bits (151), Expect = 4e-12
 Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 7/126 (5%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWT---KVEADCRKAIQL 77
           G YY  ++ Y  ++ AY +A+ L       +   A     +       +  A   KA+ L
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110

Query: 78  DHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLW 137
           D + +    LL      +  YA  I+  +K ++L             + + +  AK L  
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDL----NSPRINRTQLVESINMAKLLQR 166

Query: 138 EQESSK 143
             +   
Sbjct: 167 RSDLEH 172

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 10  VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEA 69
           V  + ++ R   + + S+    A + A  + I   P     W      +L +ND++    
Sbjct: 6   VRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLL 65

Query: 70  DCRKAIQLDHDSVKGHYLLGQTLLQRNEY---ADGIKELEKALNL 111
             R+A+QL  ++ + +  L   L  +      A     ++KAL L
Sbjct: 66  AYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 11/80 (13%), Positives = 23/80 (28%)

Query: 32  AAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT 91
           A  +     +    +  +        + +   +       R A+  D         LG+T
Sbjct: 3   AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62

Query: 92  LLQRNEYADGIKELEKALNL 111
           L  + + A   +  E  L  
Sbjct: 63  LQGQGDRAGARQAWESGLAA 82

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 8/60 (13%), Positives = 16/60 (26%)

Query: 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
          G  Y   +++ AA+     A+   P   + W         + D           +     
Sbjct: 26 GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 61.3 bits (150), Expect = 1e-11
 Identities = 15/91 (16%), Positives = 31/91 (34%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G  +    RY  A+    +             +  + ++K     +      +++    D
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           +VK   +LG T +Q  +Y   +  L K    
Sbjct: 75  NVKVATVLGLTYVQVQKYDLAVPLLIKVAEA 105

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 60.5 bits (148), Expect = 2e-11
 Identities = 13/91 (14%), Positives = 28/91 (30%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G  Y    +Y  A+    +     P          +       + +     + A+ L  +
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
             K H  +  +  Q   + + +   +KA  L
Sbjct: 143 EGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 60.2 bits (147), Expect = 3e-11
 Identities = 13/91 (14%), Positives = 28/91 (30%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G  Y          +    ++   P+     T   L +++   +        K  + +  
Sbjct: 49  GIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI 108

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           +    + LG  L     + + I   + AL L
Sbjct: 109 NFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 45.5 bits (109), Expect = 4e-06
 Identities = 11/67 (16%), Positives = 25/67 (37%)

Query: 45  PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKE 104
               +Y+ ++ + H K   +++      +    D   V     LG   ++      G + 
Sbjct: 5   DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL 64

Query: 105 LEKALNL 111
           LE++L  
Sbjct: 65  LERSLAD 71

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 14/60 (23%), Positives = 24/60 (40%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G    +  R+  AID++  A+ L PN        A  + +     +     +KA +LD  
Sbjct: 117 GVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 2/118 (1%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G+ +  +  +  A+ AY  A  L     +      L +   N+    E    +A+ +  +
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE 191

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIV--EDIWQELARAKYLL 136
                + +G    Q  E+    K    AL   +    +  +   E +   L      L
Sbjct: 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 14/138 (10%), Positives = 35/138 (25%), Gaps = 16/138 (11%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIY---------WTNRALCHLKRNDWTKVEADC 71
           G   F    +  A   + +A+     +              N      K   + +     
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELAR 131
           R+A+ L   +   +  +G        + + +     AL L    +            L  
Sbjct: 260 RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL----RRDDT---FSVTMLGH 312

Query: 132 AKYLLWEQESSKRSWELQ 149
              +      +    +++
Sbjct: 313 CIEMYIGDSEAYIGADIK 330

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 57.7 bits (140), Expect = 7e-10
 Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 1/92 (1%)

Query: 21  GNYYFSKDR-YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH 79
           G YY         A    ++A TL       W          ++  +  A    A QL  
Sbjct: 97  GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK 156

Query: 80  DSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
                   +G      N      +   +AL++
Sbjct: 157 GCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.6 bits (132), Expect = 8e-09
 Identities = 11/92 (11%), Positives = 24/92 (26%), Gaps = 1/92 (1%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALC-HLKRNDWTKVEADCRKAIQLDH 79
                  ++         + + L P+ P+ W        +  +          KA  L+ 
Sbjct: 63  IGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122

Query: 80  DSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
                    G +    +E+   +     A  L
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL 154

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 10/76 (13%), Positives = 23/76 (30%)

Query: 36  AYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQR 95
              E++           + A  H    D+          ++ D        +   TL++ 
Sbjct: 10  VIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVEL 69

Query: 96  NEYADGIKELEKALNL 111
           N+  +      K ++L
Sbjct: 70  NKANELFYLSHKLVDL 85

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 14/94 (14%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 21  GNYYFSK-DRYGAAIDAYTEAI--TLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL 77
           G +   + +R   ++  + +A+     P   I   N+ +C  K+  +   EA  ++++  
Sbjct: 83  GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA 142

Query: 78  DHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
                     L +T +   +  D     +K  + 
Sbjct: 143 QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 2/101 (1%)

Query: 11  AKQAEQLRLD-GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEA 69
           A Q   ++      Y     Y  A  +  +A+   P   + W  RA  +       K + 
Sbjct: 4   ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQE 63

Query: 70  DCRKAIQLDHDSVKGHYLLGQTLLQR-NEYADGIKELEKAL 109
             R+A+ +  DS + +   G  L  R N  A+ +   +KAL
Sbjct: 64  SFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKAL 104

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 14/90 (15%), Positives = 25/90 (27%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G     + ++G A      ++   P  P  +   A   +        +   +K       
Sbjct: 120 GICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV 179

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALN 110
                 LLG  + +    A    E E  L 
Sbjct: 180 LQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 8/61 (13%), Positives = 23/61 (37%)

Query: 51  WTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALN 110
            T  A+ +++  D+ +  A    A++ D  +     +  +            +   +AL+
Sbjct: 11  KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70

Query: 111 L 111
           +
Sbjct: 71  I 71

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 58.2 bits (142), Expect = 6e-11
 Identities = 28/91 (30%), Positives = 47/91 (51%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           GN Y+ +  Y  AI+ Y +A+ L P     W N    + K+ D+ +     +KA++LD  
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           S +  Y LG    ++ +Y + I+  +KAL L
Sbjct: 68  SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 55.9 bits (136), Expect = 3e-10
 Identities = 28/91 (30%), Positives = 47/91 (51%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           GN Y+ +  Y  AI+ Y +A+ L P     W N    + K+ D+ +     +KA++LD  
Sbjct: 42  GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           S +  Y LG    ++ +Y + I+  +KAL L
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 41.2 bits (98), Expect = 5e-05
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           GN Y+ +  Y  AI+ Y +A+ L P     W N    + K+ D+ +     +KA++LD  
Sbjct: 76  GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135

Query: 81  S 81
           S
Sbjct: 136 S 136

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 59.7 bits (145), Expect = 6e-11
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G     K  +  A+DA++              N    +    + T+ E    ++I  D  
Sbjct: 13  GVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH 69

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGY 120
               ++  G    Q  +Y   IK+L++AL   RG +   Y
Sbjct: 70  LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY 109

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 13/107 (12%), Positives = 36/107 (33%), Gaps = 16/107 (14%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH- 79
           G  Y        A  A+T +I    ++ + +  R + + +   +     D ++A+     
Sbjct: 44  GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103

Query: 80  ---------------DSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
                           + +  Y +     ++ E+    ++L  A ++
Sbjct: 104 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 59.5 bits (145), Expect = 8e-11
 Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 1/90 (1%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G  Y        A  +  +A+ L    P   +  A  +L      +  A   KA++    
Sbjct: 125 GLVYALLGERDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPK 183

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALN 110
            +         LL + +  +  +      +
Sbjct: 184 DLDLRVRYASALLLKGKAEEAARAAALEHH 213

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 55.6 bits (135), Expect = 2e-09
 Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 11/102 (10%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G   ++  RY AA+  +  A+   P  P      A   LK         + +  +     
Sbjct: 12  GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR 71

Query: 81  SVKGHYLLGQTLL-----------QRNEYADGIKELEKALNL 111
            + G+ +L +  +            +      +  L+ A  +
Sbjct: 72  YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV 113

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 1/98 (1%)

Query: 14  AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73
               R   +    K     A+    +A  + P        R L +    +  K EA  ++
Sbjct: 84  VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143

Query: 74  AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           A+ L+ D+ +    L +  L      + + +  KAL  
Sbjct: 144 ALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ 180

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 10/59 (16%), Positives = 15/59 (25%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH 79
              Y S  R   A+  Y +A+   P         A   L +    +            H
Sbjct: 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.9 bits (148), Expect = 8e-11
 Identities = 11/91 (12%), Positives = 23/91 (25%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G    + +     +    +A  L P   +   +            ++     +A  L  +
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 376

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            V      G            +  L +A  L
Sbjct: 377 QVVAIASNGGGKQALETVQRLLPVLCQAHGL 407

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 10/100 (10%), Positives = 24/100 (24%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
           +Q   +        + +     +    +A  L P   +   +            ++    
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 401

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            +A  L  + V                   +  L +A  L
Sbjct: 402 CQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGL 441

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 9/91 (9%), Positives = 20/91 (21%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
                + +     +    +A  L P   +   +            ++     +A  L   
Sbjct: 283 SGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 342

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            V                   +  L +A  L
Sbjct: 343 QVVAIASHDGGKQALETVQRLLPVLCQAHGL 373

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 11/100 (11%), Positives = 24/100 (24%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
           +Q   +        + +     +    +A  L P   +   +             +    
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVL 163

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            +A  L  + V      G            +  L +A  L
Sbjct: 164 CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGL 203

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.0 bits (143), Expect = 4e-10
 Identities = 12/100 (12%), Positives = 25/100 (25%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
           +Q   +        + +   A +    +A  L P   +   +            ++    
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 197

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            +A  L    V      G            +  L +A  L
Sbjct: 198 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL 237

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.6 bits (142), Expect = 5e-10
 Identities = 10/91 (10%), Positives = 21/91 (23%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G    + +     +    +A  L P   +   +            ++     +A  L   
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 444

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            V      G            +   + AL  
Sbjct: 445 QVVAIASNGGGRPALESIVAQLSRPDPALAA 475

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.6 bits (142), Expect = 5e-10
 Identities = 12/100 (12%), Positives = 27/100 (27%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
           +Q   +  +G    + +     +    +A  L P   +   + +          ++    
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVL 299

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            +A  L    V      G            +  L +A  L
Sbjct: 300 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL 339

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.6 bits (142), Expect = 5e-10
 Identities = 10/100 (10%), Positives = 24/100 (24%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
           +Q   +        + +     +    +A  L P   +   +            ++    
Sbjct: 70  EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            +A  L  + V                   +  L +A  L
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGL 169

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 10/91 (10%), Positives = 21/91 (23%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G    + +     +    +A  L P   +   +            ++     +A  L   
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 274

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            V                   +  L +A  L
Sbjct: 275 QVVAIASNSGGKQALETVQRLLPVLCQAHGL 305

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 12/100 (12%), Positives = 26/100 (26%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
           +Q   +  +G    + +     +    +A  L P   +   +            ++    
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 231

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            +A  L    V      G            +  L +A  L
Sbjct: 232 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL 271

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 5/69 (7%), Positives = 16/69 (23%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
           +Q   +        + +     +    +A  L P   +   +               +  
Sbjct: 410 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRP 469

Query: 72  RKAIQLDHD 80
             A+    +
Sbjct: 470 DPALAALTN 478

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 16/110 (14%), Positives = 28/110 (25%), Gaps = 5/110 (4%)

Query: 7   LAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAIT-----LCPNVPIYWTNRALCHLKR 61
           L G   Q +  +L             A+ A+  A+T     L P   +   +        
Sbjct: 26  LRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQAL 85

Query: 62  NDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
               ++     +A  L    V                   +  L +A  L
Sbjct: 86  ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGL 135

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 56.2 bits (137), Expect = 2e-10
 Identities = 28/91 (30%), Positives = 49/91 (53%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           GN Y+ +  Y  AI+ Y +A+ L PN    W N    + K+ D+ +     +KA++LD +
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           + +  Y LG    ++ +Y + I+  +KAL L
Sbjct: 76  NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 47.0 bits (113), Expect = 4e-07
 Identities = 21/72 (29%), Positives = 36/72 (50%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           GN Y+ +  Y  AI+ Y +A+ L PN    W N    + K+ D+ +     +KA++LD +
Sbjct: 50  GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109

Query: 81  SVKGHYLLGQTL 92
           + +    LG   
Sbjct: 110 NAEAKQNLGNAK 121

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 37.8 bits (89), Expect = 6e-04
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 45  PNVPIYWTNR--ALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGI 102
            N    W N   A       D  +     +KA++LD ++ +  Y LG    ++ +Y + I
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYD--EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63

Query: 103 KELEKALNL 111
           +  +KAL L
Sbjct: 64  EYYQKALEL 72

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 17/91 (18%), Positives = 35/91 (38%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G  +     +  AIDA+  A+T+ P     W          +   +      +A+++   
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            ++  Y LG + +    Y + +     AL+L
Sbjct: 280 FIRSRYNLGISCINLGAYREAVSNFLTALSL 310

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 19/143 (13%), Positives = 41/143 (28%), Gaps = 8/143 (5%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G     +      I     AI   P     W    +   +  +        ++ ++L  +
Sbjct: 72  GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN 131

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQE 140
           ++K    L  +    +   D  + L+  +       PK      + +    +  L     
Sbjct: 132 NLKALMALAVSYTNTSHQQDACEALKNWIKQ----NPKYK---YLVKNKKGSPGLTRRMS 184

Query: 141 SSKRSWE-LQSLKEACEAALEEK 162
            S      L+ +KE    A  + 
Sbjct: 185 KSPVDSSVLEGVKELYLEAAHQN 207

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 16/92 (17%), Positives = 24/92 (26%)

Query: 20  DGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH 79
           +     ++    A+   Y                  L  LK  D          AI  D 
Sbjct: 37  ENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP 96

Query: 80  DSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
              +    LG T  +       I  L++ L L
Sbjct: 97  GDAEAWQFLGITQAENENEQAAIVALQRCLEL 128

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 13/99 (13%), Positives = 29/99 (29%), Gaps = 2/99 (2%)

Query: 15  EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV--PIYWTNRALCHLKRNDWTKVEADCR 72
              R                + Y EA     ++  P   T   +      ++ +      
Sbjct: 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN 237

Query: 73  KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            A+ +  +       LG TL   +   + ++   +AL +
Sbjct: 238 AALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI 276

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 19/110 (17%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G    + DR   A++AYT A+ + P       N  +  +    + +  ++   A+ L   
Sbjct: 254 GATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313

Query: 81  SVKGHYLLGQ--------------TLLQRNEYAD-----GIKELEKALNL 111
           S     +                 +L+ + E         +  L +A NL
Sbjct: 314 SRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFNL 363

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 16/91 (17%), Positives = 34/91 (37%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G  Y   + Y +A      A+ L P+    W          N   +      +A+ ++  
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            V+  Y +  +    ++Y    K+L +A+ +
Sbjct: 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 19/106 (17%), Positives = 43/106 (40%)

Query: 6   GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWT 65
             A V      ++ +  ++ + + Y         A+ + PN      +  + +   N++ 
Sbjct: 130 LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYD 189

Query: 66  KVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
              A+ R+A++L  D  +    LG TL   N   + +    +AL++
Sbjct: 190 SAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 18/137 (13%), Positives = 33/137 (24%), Gaps = 7/137 (5%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G           A  A+       P     W +  L   +             A  LD  
Sbjct: 28  GLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 87

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQE 140
            +  H  L  +    +     +  L   L      +P+    E +     +A   + +  
Sbjct: 88  DIAVHAALAVSHTNEHNANAALASLRAWLLS----QPQ---YEQLGSVNLQADVDIDDLN 140

Query: 141 SSKRSWELQSLKEACEA 157
                +   +  E  E 
Sbjct: 141 VQSEDFFFAAPNEYREC 157

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 12/79 (15%), Positives = 18/79 (22%)

Query: 33  AIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL 92
               Y                  L  LK  +  +         Q   +  +    LG T 
Sbjct: 6   NNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQ 65

Query: 93  LQRNEYADGIKELEKALNL 111
            +  +    I  L  A  L
Sbjct: 66  AENEKDGLAIIALNHARML 84

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 13/106 (12%), Positives = 31/106 (29%), Gaps = 15/106 (14%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWT--------------- 65
              + ++    AA+ +    +   P      +      +  +D                 
Sbjct: 96  AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155

Query: 66  KVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           +       A++++ +  + H  LG      N Y      L +A+ L
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL 201

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 19/111 (17%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G    + +R   A+DAY  A+ + P       N A+ +   + +        +AI +   
Sbjct: 213 GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272

Query: 81  SVKGHYLLGQ--------------TLLQRNEYAD-----GIKELEKALNLG 112
                    +               ++ R +  +      ++   K   L 
Sbjct: 273 GTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGLQ 323

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 55.0 bits (132), Expect = 4e-10
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 208 LCCKITLDIFRDPVITPS-GVTYERAVILDHLDKVGKFD-----PIT---REPLRESQLV 258
             C IT +  + PV     G TYE   I+  ++   K       P        +R+S L+
Sbjct: 8   FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI 67

Query: 259 PNLAIKEAVRAYMDKH 274
            + A++ A+  +  K 
Sbjct: 68  QDEALRRAIENHNKKR 83

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 58.1 bits (141), Expect = 5e-10
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G  +     Y  A+D +T A+++ PN  + W          N   +  A  R+A++L   
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK--------GYIVEDIWQELARA 132
            ++  Y LG + +    + + ++   +ALN+    + K        G + E+IW  L  A
Sbjct: 284 YIRSRYNLGISCINLGAHREAVEHFLEALNM----QRKSRGPRGEGGAMSENIWSTLRLA 339

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 19/106 (17%), Positives = 31/106 (29%), Gaps = 5/106 (4%)

Query: 11  AKQAEQLRLDGNYYFSKDRYG-AAIDAYTEAITLCPNVPIY----WTNRALCHLKRNDWT 65
           A+  E  + D   +     Y       Y +        P+          L  L+  D  
Sbjct: 22  AELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP 81

Query: 66  KVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
                   A+Q D   ++    LG T  +  +    I  L + L L
Sbjct: 82  NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 127

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 17/137 (12%), Positives = 33/137 (24%), Gaps = 4/137 (2%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G     +     A+  +  A+   P     W        +        +  R+ ++L  D
Sbjct: 71  GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 130

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQE 140
           +      L  +    +      + L   L       P    +    +E A    L   + 
Sbjct: 131 NQTALMALAVSFTNESLQRQACEILRDWLRY----TPAYAHLVTPAEEGAGGAGLGPSKR 186

Query: 141 SSKRSWELQSLKEACEA 157
                       E  E 
Sbjct: 187 ILGSLLSDSLFLEVKEL 203

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 2/94 (2%)

Query: 20  DGNYYFSKDRYGAAIDAYTEAITLCPN--VPIYWTNRALCHLKRNDWTKVEADCRKAIQL 77
                 S   +    + +  A+ L P    P       +      ++ K       A+ +
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246

Query: 78  DHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
             +       LG TL   N+  + +    +AL L
Sbjct: 247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 57.7 bits (139), Expect = 1e-09
 Identities = 16/137 (11%), Positives = 39/137 (28%), Gaps = 9/137 (6%)

Query: 27  KDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTK-VEADCRKAIQLDHDSVKGH 85
           ++     +    E +            +        D++   E    KA++L+ + V+  
Sbjct: 81  QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW 140

Query: 86  YLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRS 145
             LG+   ++ +          AL   +             Q L+     L      + S
Sbjct: 141 NQLGEVYWKKGDVTSAHTCFSGALTHCKNK--------VSLQNLSMVLRQLQTDSGDEHS 192

Query: 146 WELQSLKEACEAALEEK 162
             +       + A++  
Sbjct: 193 RHVMDSVRQAKLAVQMD 209

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 50.8 bits (121), Expect = 2e-07
 Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 3/83 (3%)

Query: 29  RYGAAIDAYTEAITLCPNVPIY---WTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGH 85
               A+ AY +A  +            NRA  H     + +      +A  LD    +  
Sbjct: 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQ 295

Query: 86  YLLGQTLLQRNEYADGIKELEKA 108
               Q L   +     ++   K 
Sbjct: 296 QREQQLLEFLSRLTSLLESKGKT 318

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 50.0 bits (119), Expect = 4e-07
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVE---------ADC 71
           G  Y+ K    +A   ++ A+T C N      N ++   +    +  E            
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ-NLSMVLRQLQTDSGDEHSRHVMDSVRQA 202

Query: 72  RKAIQLDHDSVKGHYLLGQTLL-QRNEYADGIKELEKALN 110
           + A+Q+D    +  Y+LG   L          K  ++AL+
Sbjct: 203 KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 23/143 (16%), Positives = 42/143 (29%), Gaps = 10/143 (6%)

Query: 23  YYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82
              + D    A    ++A+ L P +   W      + K+ D T        A+    +  
Sbjct: 112 LNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNK- 170

Query: 83  KGHYLLGQTL--LQRNEYADGIKELEKALNLGRGA---KPKGYIVEDIWQELARAKYLLW 137
                L   L  LQ +   +  + +  ++   + A             W  L  A YL  
Sbjct: 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG---RSWYILGNA-YLSL 226

Query: 138 EQESSKRSWELQSLKEACEAALE 160
              + +     Q    A   A +
Sbjct: 227 YFNTGQNPKISQQALSAYAQAEK 249

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.7 bits (139), Expect = 1e-09
 Identities = 13/100 (13%), Positives = 26/100 (26%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
            Q   +   G    + +     +    +A  L P+  +   +            ++    
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 351

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            +A  L  D V      G            +  L +A  L
Sbjct: 352 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL 391

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.7 bits (131), Expect = 1e-08
 Identities = 11/100 (11%), Positives = 25/100 (25%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
            Q   +  +     + +     +    +A  L P+  +   +            ++    
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVL 317

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            +A  L  D V                   +  L +A  L
Sbjct: 318 CQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGL 357

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 11/109 (10%), Positives = 25/109 (22%)

Query: 3   LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN 62
           L         Q   +        + +     +    +A  L P+  +   +         
Sbjct: 622 LCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 681

Query: 63  DWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
              ++     +A  L  + V                   +  L +A  L
Sbjct: 682 TVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGL 730

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.1 bits (127), Expect = 5e-08
 Identities = 11/100 (11%), Positives = 24/100 (24%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
            Q   +  +     + +     +    +A  L P   +   +            ++    
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVL 249

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            +A  L  D V                   +  L +A  L
Sbjct: 250 CQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGL 289

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.7 bits (126), Expect = 6e-08
 Identities = 12/100 (12%), Positives = 25/100 (25%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
            Q   +        + +     +    +A  L P+  +   +            ++    
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            +A  L  D V      G            +  L +A  L
Sbjct: 284 CQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGL 323

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.6 bits (123), Expect = 2e-07
 Identities = 12/100 (12%), Positives = 25/100 (25%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
            Q   +  +G    + +     +    +A  L     +   +            ++    
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVL 724

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            +A  L  D V      G            +  L +A  L
Sbjct: 725 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL 764

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.8 bits (121), Expect = 2e-07
 Identities = 10/97 (10%), Positives = 24/97 (24%)

Query: 13  QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72
           Q   +  +G    + +     +    +A  L P+  +   +            ++     
Sbjct: 530 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 589

Query: 73  KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKAL 109
           +A  L    V                   +  L +A 
Sbjct: 590 QAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAH 626

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.4 bits (120), Expect = 4e-07
 Identities = 12/100 (12%), Positives = 25/100 (25%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
            Q   +  +     + +     +    +A  L P   +   +            ++    
Sbjct: 597 VQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVL 656

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            +A  L  D V      G            +  L +A  L
Sbjct: 657 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL 696

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.0 bits (119), Expect = 4e-07
 Identities = 10/99 (10%), Positives = 22/99 (22%)

Query: 13  QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72
           Q   +        + +     +    +   L P   +   +            ++     
Sbjct: 428 QVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLC 487

Query: 73  KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           +A  L  D V                   +  L +A  L
Sbjct: 488 QAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGL 526

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 10/99 (10%), Positives = 23/99 (23%)

Query: 13  QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72
           Q   +  +G    + +     +    +A  L     +   +            ++     
Sbjct: 564 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLC 623

Query: 73  KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           +A  L    V                   +  L +A  L
Sbjct: 624 QAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGL 662

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 12/99 (12%), Positives = 25/99 (25%)

Query: 13  QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72
           Q   +        + +     +    +A  L P+  +   +            ++     
Sbjct: 462 QVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLC 521

Query: 73  KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           +A  L  D V      G            +  L +A  L
Sbjct: 522 QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL 560

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 12/100 (12%), Positives = 25/100 (25%), Gaps = 1/100 (1%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
            Q   +        + +     +    +A  L P+  +   +            ++    
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 385

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            +A  L  D V      G            +  L +A  L
Sbjct: 386 CQAHGLTPDQVVAIASNGGKQAL-ETVQRLLPVLCQAHGL 424

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 12/99 (12%), Positives = 25/99 (25%)

Query: 13  QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72
           Q   +  +     +       +    +A  L P+  +   +            ++     
Sbjct: 496 QVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 555

Query: 73  KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           +A  L  D V      G            +  L +A  L
Sbjct: 556 QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL 594

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 8/83 (9%), Positives = 18/83 (21%)

Query: 29  RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL 88
                +    +A  L P+  +   +            ++     +   L    V      
Sbjct: 410 TVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASH 469

Query: 89  GQTLLQRNEYADGIKELEKALNL 111
                        +  L +A  L
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGL 492

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 16/110 (14%), Positives = 27/110 (24%), Gaps = 5/110 (4%)

Query: 7   LAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAIT-----LCPNVPIYWTNRALCHLKR 61
           L G   Q +  +L             A+ A   A+T     L P   +   +        
Sbjct: 146 LRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQAL 205

Query: 62  NDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
               ++     +A  L    V                   +  L +A  L
Sbjct: 206 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGL 255

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 195 AAEDDTPAEVPDYLCCKITLDIFRDPVITPS-GVTYERAVILDHLDKVGKFD-PITRE-P 251
                    +PD L C I  DI  D V+ P  G +Y    I   L +  +   P   +  
Sbjct: 1   GPLGSEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60

Query: 252 LRESQLVPNLAIKEAVRAY 270
           +    L+ N  +++AV  +
Sbjct: 61  VSPDALIANKFLRQAVNNF 79

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 52.8 bits (128), Expect = 2e-09
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 10/97 (10%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNR--ALCHLKRNDWTKVEA--DCRKAIQ 76
           G   +    Y  +ID + +AI L P    YW  +  AL +L+R +    EA       I 
Sbjct: 13  GVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYE----EAVDCYNYVIN 68

Query: 77  L--DHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           +  D  +          L          +  E    L
Sbjct: 69  VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPN--VPIYWTNR--ALCHLKRNDWTKVEA--DCRKA 74
           G   ++ +RY  A+D Y   I +  +      W  +  AL +++  +             
Sbjct: 47  GKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKE----VEAEIAEAR 102

Query: 75  IQLDHD 80
            +L+H 
Sbjct: 103 AKLEHH 108

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 55.3 bits (132), Expect = 3e-09
 Identities = 38/255 (14%), Positives = 81/255 (31%), Gaps = 25/255 (9%)

Query: 39  EAITLCPNVPIYWTNRALCH-LKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQR-- 95
               +  +VP++  +    H L   D + +   C K I    + +          ++   
Sbjct: 4   NDNPIPKSVPLHPKSGKYFHNLHARDLSNIYQQCYKQIDETINQLVDSTSPSTIGIEEQV 63

Query: 96  NEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEAC 155
            +     K L    +           ++  +++ + A       +    +W+     E  
Sbjct: 64  ADITSTYKLLSTYESESNSFDEHIKDLKKNFKQSSDA-----CPQIDLSTWDKYRTGELT 118

Query: 156 EAALEEKHVLDISRKEGFLDEASSTHLKQMEALRQVFR-----------KAAEDDTPAEV 204
              L E   L++   E      ++  LK ++ L  ++             A EDD   E 
Sbjct: 119 APKLSEL-YLNMPTPEPATMVNNTDTLKILKVLPYIWNDPTCVIPDLQNPADEDDLQIEG 177

Query: 205 PDY-LCCKITLDIFRDPVITPS-GVTYERAVILDHLDKVGKFD-PIT--REPLRESQLVP 259
               L C IT   +  P+I+      ++R  I ++L      D P     + +     V 
Sbjct: 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVR 237

Query: 260 NLAIKEAVRAYMDKH 274
           +  ++   +    K 
Sbjct: 238 DPIMELRCKIAKMKE 252

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 56.1 bits (135), Expect = 3e-09
 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 7/95 (7%)

Query: 24  YFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVE---ADCRKAIQLDHD 80
               ++   A   + +A+   P  P + +  A+   + ++W   +      R+AI+L+ D
Sbjct: 148 KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207

Query: 81  SVKGHYLLGQTL----LQRNEYADGIKELEKALNL 111
           +     LL   L     +  E  +G K +E+AL  
Sbjct: 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK 242

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.2 bits (117), Expect = 7e-07
 Identities = 17/119 (14%), Positives = 35/119 (29%), Gaps = 19/119 (15%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKR---------- 61
              + LR    +Y  KD    AI+   +A+   PN          C+  +          
Sbjct: 245 GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLREN 304

Query: 62  ---------NDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
                           A  +KA + + +  +   +L       ++Y +     +K  + 
Sbjct: 305 GMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 12/90 (13%), Positives = 29/90 (32%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
                  +  G       EA+   P V     + A  + ++++  K     +KA++   +
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALN 110
           +   H  +G     +      ++E      
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.5 bits (110), Expect = 5e-06
 Identities = 14/107 (13%), Positives = 28/107 (26%), Gaps = 4/107 (3%)

Query: 9   GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVE 68
                  +           +  G A+    +A     N+    +  A  H   + + + E
Sbjct: 295 VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAE 354

Query: 69  ADCRKAIQLDHDSVKG---HYLLGQTLL-QRNEYADGIKELEKALNL 111
              +K    +   V     H   G   L Q       I    + + +
Sbjct: 355 YYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 9/90 (10%), Positives = 25/90 (27%), Gaps = 10/90 (11%)

Query: 24  YFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK 83
            +       AI  + E + +                K     K++   +  +  +    +
Sbjct: 382 LYQMKCEDKAIHHFIEGVKINQK----------SREKEKMKDKLQKIAKMRLSKNGADSE 431

Query: 84  GHYLLGQTLLQRNEYADGIKELEKALNLGR 113
             ++L        +     ++ E+ L  G 
Sbjct: 432 ALHVLAFLQELNEKMQQADEDSERGLESGS 461

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 11/104 (10%), Positives = 25/104 (24%), Gaps = 13/104 (12%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNR----------ALCHLKRNDWTKVEAD 70
              Y+   R         +   +C      +                    N   + +  
Sbjct: 101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVC 160

Query: 71  CRKAIQLDHDSVKGHYLLGQTLLQ---RNEYADGIKELEKALNL 111
             KA++    + +    L     +        + I  L +A+ L
Sbjct: 161 FEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 13/91 (14%), Positives = 20/91 (21%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G           A  A+       P     W +  L   +             A  LD  
Sbjct: 24  GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 83

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            +  H  L  +    +     +  L   L  
Sbjct: 84  DIAVHAALAVSHTNEHNANAALASLRAWLLS 114

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 12/58 (20%), Positives = 18/58 (31%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD 78
           G      ++ G AI A   A  L P         A+ H   ++     A  R  +   
Sbjct: 58  GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 11/61 (18%), Positives = 18/61 (29%)

Query: 51  WTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALN 110
                L  LK  +  +         Q + +  +    LG T  +  +    I  L  A  
Sbjct: 20  PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79

Query: 111 L 111
           L
Sbjct: 80  L 80

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 52.4 bits (125), Expect = 3e-08
 Identities = 12/88 (13%), Positives = 26/88 (29%)

Query: 22  NYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS 81
           +     ++   A   + E    C    +    +A CH+ +  W   E   ++A+  D   
Sbjct: 174 SLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233

Query: 82  VKGHYLLGQTLLQRNEYADGIKELEKAL 109
            +    L        +  +        L
Sbjct: 234 PETLINLVVLSQHLGKPPEVTNRYLSQL 261

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 15/67 (22%), Positives = 29/67 (43%)

Query: 45  PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKE 104
           P  P      A  HLK ++ ++  A   + ++ D D V  +Y LG+   + +   D I  
Sbjct: 4   PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63

Query: 105 LEKALNL 111
             + + +
Sbjct: 64  YAQGIEV 70

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 8/81 (9%), Positives = 24/81 (29%), Gaps = 1/81 (1%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
              +   D    A+  + E +   P+    + +    + + +          + I++  +
Sbjct: 14  AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73

Query: 81  SVKGHYLLG-QTLLQRNEYAD 100
                 L   Q    + E  +
Sbjct: 74  EGTQKDLSELQDAKLKAEGLE 94

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 49.7 bits (118), Expect = 4e-07
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 25  FSKDRYGAAIDAYTEAITL--CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV 82
             + +  A        +TL    N+ I +  +A+  L +    +        I L+  S 
Sbjct: 252 LDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-MSW 310

Query: 83  KGHYLLGQTLLQRNEYADGIKELEKALNL 111
             + LLG+    +    +       A NL
Sbjct: 311 LNYVLLGKVYEMKGMNREAADAYLTAFNL 339

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 10/112 (8%), Positives = 30/112 (26%), Gaps = 13/112 (11%)

Query: 13  QAEQLRLDGNYYF---SKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDW----- 64
                    + Y           A +   E +   P        +AL  + R+       
Sbjct: 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDE 254

Query: 65  ---TKVEADCRKAIQLDHDSV--KGHYLLGQTLLQRNEYADGIKELEKALNL 111
                +  +    + L   +     + +   + L + +  +  + +   ++L
Sbjct: 255 KQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL 306

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 45.9 bits (109), Expect = 6e-07
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 202 AEVPDYLCCKITLDIFRDPVITPS-GVTYERAVILDHLDKVGKFDPITREPLRESQLVPN 260
             + D L C I  + F   +I P     Y    I   L    +  P     + E  L  N
Sbjct: 17  KTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQC-PTCCVTVTEPDLKNN 75

Query: 261 LAIKEAVRAY 270
             + E V++ 
Sbjct: 76  RILDELVKSL 85

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 45.1 bits (107), Expect = 8e-07
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 195 AAEDDTPAEVPDYLCCKITLDIFRDPVITPS-GVTYERAVILDHLDKVGKFD-PITREPL 252
           +        +PD L C I  DI  D V+ P  G +Y    I   L +  +   P   +  
Sbjct: 3   SGSSGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62

Query: 253 RE 254
             
Sbjct: 63  VS 64

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 45.5 bits (109), Expect = 8e-07
 Identities = 21/72 (29%), Positives = 36/72 (50%)

Query: 21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
          GN Y+ +  Y  AI+ Y +A+ L PN    W N    + K+ D+ +     +KA++LD +
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75

Query: 81 SVKGHYLLGQTL 92
          + +    LG   
Sbjct: 76 NAEAKQNLGNAK 87

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 43/295 (14%), Positives = 82/295 (27%), Gaps = 98/295 (33%)

Query: 6   GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAY-TEAITLCPNVPIYWTN----------- 53
           G+ G  K      +             A+D   +  +    +  I+W N           
Sbjct: 157 GVLGSGKTW----V-------------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 54  ---RALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYA------DGIKE 104
              + L +    +WT   +D    I+L   S++      + LL+   Y         ++ 
Sbjct: 200 EMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAEL---RRLLKSKPYENCLLVLLNVQN 255

Query: 105 LE--KALNLG-------R---------GAKPKGYIVEDIWQELAR-------AKYLLWEQ 139
            +   A NL        R          A      ++     L          KYL    
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL---- 311

Query: 140 ESSKRSWELQSL-KEACEAALEEKHVLDISRKEGFLDEASST--HLKQM--EALRQVFRK 194
                    Q L +E         +   +S     + +  +T  + K +  + L  +   
Sbjct: 312 -----DCRPQDLPREVLTT-----NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 195 AAEDDTPAEVPDYLCCKITLDIFRDPVITPSGV---------TYERAVILDHLDK 240
           +     PAE          L +F      P+ +           +  V+++ L K
Sbjct: 362 SLNVLEPAEYRKMF---DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 19/68 (27%), Positives = 30/68 (44%)

Query: 197 EDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQ 256
           + +    +     C I L   R+ V TP G  + +A I+  +   G   P+  E L E+Q
Sbjct: 8   DVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67

Query: 257 LVPNLAIK 264
           L P+   K
Sbjct: 68  LFPDNFAK 75

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 3/84 (3%)

Query: 29  RYGAAIDAYTEAITLCPNVPIY---WTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGH 85
               A+  Y +AI            +           ++ K EA     ++   +     
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 86  YLLGQTLLQRNEYADGIKELEKAL 109
                 L     Y  G++ L K +
Sbjct: 65  VFYAMVLYNLGRYEQGVELLLKII 88

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 43.0 bits (101), Expect = 9e-06
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 199 DTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLV 258
           D PA     + C+I   I  DPV T     + R  IL  L  +G + P  R P   + L 
Sbjct: 15  DFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE 74

Query: 259 -PNLAIKE 265
            P  +   
Sbjct: 75  SPVKSFLN 82

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 208 LCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFD-----PITREPLRESQLVPNLA 262
           + C I L++ ++PV      ++ RA I  + +     D     P+ R P     L PNL 
Sbjct: 20  VTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLH 79

Query: 263 IKEAV 267
           +   V
Sbjct: 80  VANIV 84

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 40.7 bits (95), Expect = 6e-05
 Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 1/70 (1%)

Query: 202 AEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRES-QLVPN 260
           ++V +   C    ++   P+ T       +  +           P  R  L  S  +  N
Sbjct: 47  SKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVN 106

Query: 261 LAIKEAVRAY 270
             ++  +   
Sbjct: 107 QPLQTVLNQL 116

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 41.6 bits (97), Expect = 7e-05
 Identities = 19/67 (28%), Positives = 29/67 (43%)

Query: 201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPN 260
              +     C I L   R+ V TP G  + +A I+  +   G   P+  E L E+QL P+
Sbjct: 12  DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71

Query: 261 LAIKEAV 267
              K  +
Sbjct: 72  NFAKREI 78

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 20 DGNYYFSKDRYGAAIDAYTEAITLCP-NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD 78
                ++     A+ A  E +   P      +      + K  DW K   + + AI+L+
Sbjct: 6  TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65

Query: 79 HDS 81
           DS
Sbjct: 66 PDS 68

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 1/79 (1%)

Query: 193 RKAAEDDTPAEVPDYLCCKITLDIFRDPVITPS-GVTYERAVILDHLDKVGKFDPITREP 251
               ++ +   + +   C I ++  RD  + P        + I   L +     P  R P
Sbjct: 8   HSHMDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAP 67

Query: 252 LRESQLVPNLAIKEAVRAY 270
           L+  +LV     +E  +  
Sbjct: 68  LQLRELVNCRWAEEVTQQL 86

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 9/73 (12%), Positives = 24/73 (32%), Gaps = 1/73 (1%)

Query: 199 DTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRES-QL 257
           +   ++     C    ++   PV T       +  +           P  R  L ++  +
Sbjct: 70  NFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIM 129

Query: 258 VPNLAIKEAVRAY 270
           +PN  ++  +  +
Sbjct: 130 IPNEILQTLLDLF 142

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 6/66 (9%)

Query: 208 LCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFD------PITREPLRESQLVPNL 261
           + C I L++  +P+    G +  RA I     +           P+         L  N 
Sbjct: 13  VTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQ 72

Query: 262 AIKEAV 267
            +   V
Sbjct: 73  HLANIV 78

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 208 LCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFD--PITREPLRESQLVPNLAIKE 265
           L C I L++ ++PV T     + +  +L  L++       P+ +  + +  L  +    +
Sbjct: 22  LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQ 81

Query: 266 AV 267
            V
Sbjct: 82  LV 83

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 208 LCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFD-----PITREPLRESQLVPNLA 262
           + C I L++   P+    G ++ +A +  +  K          P+ R   +   + PN  
Sbjct: 20  VTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRH 79

Query: 263 IKEAV 267
           +   V
Sbjct: 80  VANIV 84

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 40.1 bits (93), Expect = 5e-04
 Identities = 8/85 (9%), Positives = 26/85 (30%)

Query: 27  KDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHY 86
           +      ++  T  I   P     W +R +      D ++        +  D  +     
Sbjct: 145 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ 204

Query: 87  LLGQTLLQRNEYADGIKELEKALNL 111
                + +   + + ++ +++ L  
Sbjct: 205 HRQWVIQEFKLWDNELQYVDQLLKE 229

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 36.3 bits (84), Expect = 7e-04
 Identities = 8/55 (14%), Positives = 18/55 (32%)

Query: 203 EVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQL 257
            V D   C+    +   P  T  G  +  + +   L          +E + + ++
Sbjct: 11  TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	281
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	100.0
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.97
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.89
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.89
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.88
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.88
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.85
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.84
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.83
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.83
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.83
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.82
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.82
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.81
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.8
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.8
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.78
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.78
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.78
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.77
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.77
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.76
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.76
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.74
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.74
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.74
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.73
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.72
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.72
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.71
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.71
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.71
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.7
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.69
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.69
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.68
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.68
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.67
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.67
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.67
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.66
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.66
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.65
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.65
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.65
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	99.65
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.65
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.64
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.64
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.64
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.63
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.63
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.63
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.63
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.62
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.62
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.62
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.62
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.61
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.61
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.6
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.6
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.6
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.6
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.6
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.6
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.59
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.59
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.59
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.59
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.58
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.58
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.58
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.58
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.58
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.58
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.57
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.57
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.57
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.57
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.57
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.57
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.57
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.56
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.56
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.56
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.56
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.56
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.56
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.56
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.55
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.55
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.55
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.55
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.55
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.55
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.55
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.54
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.54
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.54
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.54
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.53
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.52
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.52
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.52
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.51
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.51
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.51
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.51
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.51
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.51
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.51
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.51
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.51
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.5
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.5
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.5
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.49
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.49
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.49
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.48
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.47
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.47
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.47
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.47
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.46
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.46
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.46
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.46
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.45
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.45
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.45
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.45
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.45
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.45
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.45
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.44
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.44
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.44
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.43
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.43
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.42
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.42
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.42
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.42
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.41
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.41
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.41
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.4
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.4
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.39
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.39
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.38
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.38
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.38
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.38
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.37
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.37
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.36
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.36
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.36
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.35
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.35
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.34
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.34
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.34
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.33
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.33
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.33
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.33
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.32
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.32
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.32
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.31
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.3
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.3
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.29
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.29
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.29
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.29
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.29
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.28
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.28
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.28
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.28
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.28
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.28
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.28
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.27
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.27
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.26
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.26
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.26
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.25
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.25
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.25
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.24
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.24
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.23
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.23
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.23
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.21
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.2
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.2
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.2
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.2
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.2
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.19
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.18
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.18
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.17
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.16
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.16
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.16
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.15
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.14
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.13
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.13
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.12
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.12
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.12
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.11
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.11
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.1
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.1
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.1
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.09
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.09
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.08
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.08
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.06
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.05
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.05
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	99.02
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.01
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.0
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.99
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.98
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.95
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.95
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.95
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.94
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.89
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.88
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.87
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.87
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.87
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.86
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.86
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.84
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.8
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.79
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.77
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.73
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.72
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.7
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.69
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.68
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.68
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.67
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.66
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.63
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.62
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.61
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.61
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.59
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.59
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.56
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.52
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.49
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.48
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.44
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.43
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.38
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.38
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.38
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.37
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.29
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.29
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.22
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.17
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.16
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.16
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.03
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.98
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.95
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.76
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.75
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.71
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.64
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.64
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.52
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.48
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.44
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.37
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	97.29
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.25
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	97.18
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	97.11
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.01
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.79
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.67
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	96.52
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.47
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.44
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	96.15
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	95.97
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.96
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.91
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.62
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.48
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.44
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.26
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.77
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.44
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.41
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.32
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.94
3nw0_A	238	Non-structural maintenance of chromosomes element	92.76
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	92.75
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	92.08
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.06
2kkx_A	102	Uncharacterized protein ECS2156; methods developme	91.65
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	91.46
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.95
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	90.67
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	90.34
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	88.75
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	88.58
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	87.23
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	86.47
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	86.36
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	85.7
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	85.48
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	85.41
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	85.38
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	84.98
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	84.9
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	84.45
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	84.29
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	84.27
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	83.58
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	83.54
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	83.37
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	82.71
1m3v_A	122	FLIN4, fusion of the LIM interacting domain of LDB	82.07
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	81.86
2jne_A	101	Hypothetical protein YFGJ; zinc fingers, two zinc,	81.62
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	81.33
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	80.86
1lko_A	191	Rubrerythrin all-iron(II) form; reduced form, DIIR	80.72
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	80.16

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=100.00  E-value=9e-46  Score=312.27  Aligned_cols=265  Identities=37%  Similarity=0.642  Sum_probs=208.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT   91 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~   91 (281)
                      ..+..+..+|..++..|+|++|+..|++++..+|+++.++.++|.+|..+|++++|+.++++|++++|+++.+++.+|.+
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHH
Q 023501           92 LLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKR---------------SWELQSLKEACE  156 (281)
Q Consensus        92 ~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~  156 (281)
                      +..+|++++|+..|.+++.++|++...  +...+...+...+...+......+               .+++.++.+.+.
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~  159 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLAKEQRLN--FGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQ  159 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCC--CCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchhh--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999975433  122333334333333332222221               122222222222


Q ss_pred             HHHHHhhhhhhhhhccchhhhhhHHHHHHHHHHHHHHHhcCcCCCCCCCCcccccCCcccccCceecCCCcccccchHHh
Q 023501          157 AALEEKHVLDISRKEGFLDEASSTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILD  236 (281)
Q Consensus       157 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~  236 (281)
                      .+++..+...  ........+.......+..+...|..+........+|..|.||||.++|.+||++||||+||+.||++
T Consensus       160 ~al~~~p~~~--~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~  237 (281)
T 2c2l_A          160 RNHEGHEDDG--HIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEE  237 (281)
T ss_dssp             GGGTTTSCHH--HHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHH
T ss_pred             hhhccccchh--hhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHH
Confidence            2222111000  00001112334445566778888888877777888999999999999999999999999999999999


Q ss_pred             HhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHcCCCccC
Q 023501          237 HLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWAYKA  280 (281)
Q Consensus       237 ~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~~~~~~~  280 (281)
                      ||..++.+||+||.+++..+++||..|+++|+.|+..|||+++|
T Consensus       238 ~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~~~~  281 (281)
T 2c2l_A          238 HLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVEDY  281 (281)
T ss_dssp             HHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSSCC
T ss_pred             HHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCCCCC
Confidence            99876656999999999999999999999999999999999998

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.97  E-value=3.1e-32  Score=209.55  Aligned_cols=160  Identities=35%  Similarity=0.641  Sum_probs=126.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc---------cchhhhhhHHHHHHHHHHHH
Q 023501          121 IVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKE---------GFLDEASSTHLKQMEALRQV  191 (281)
Q Consensus       121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~  191 (281)
                      +.+.|...+.++++..|..+...|..+..++..++..+++.+..+......         .....+..++.+.+..+..+
T Consensus        11 ~~~~I~~~l~~aKk~~w~~~e~~r~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l   90 (179)
T 2f42_A           11 FGDDIPSALRIAKKKRWNSIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDDSQNGGDISKMKSKHDKYLMDMDEL   90 (179)
T ss_dssp             -----------CCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------------------CHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999999999999987765544221         12233566777888899999


Q ss_pred             HHHhcCcCCCCCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHH
Q 023501          192 FRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYM  271 (281)
Q Consensus       192 ~~~~~~~~~~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~  271 (281)
                      |..+........+|..|.||||+++|.|||++||||+||+.||..||..++.+||+||.+++..+++||..|+++|+.|+
T Consensus        91 ~~~~~~~~~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~  170 (179)
T 2f42_A           91 FSQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI  170 (179)
T ss_dssp             HHHHHHGGGCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred             HHHHhhhccccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHH
Confidence            98886666678899999999999999999999999999999999999875546999999999999999999999999999


Q ss_pred             HHcCCCccC
Q 023501          272 DKHGWAYKA  280 (281)
Q Consensus       272 ~~~~~~~~~  280 (281)
                      ..|||++||
T Consensus       171 ~~~~~~~d~  179 (179)
T 2f42_A          171 QENGWVEDY  179 (179)
T ss_dssp             HHCTTCC--
T ss_pred             HHCCCcCCC
Confidence            999999998

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.89  E-value=1.1e-23  Score=147.41  Aligned_cols=78  Identities=32%  Similarity=0.450  Sum_probs=72.6

Q ss_pred             CCCCCCCcccccCCcccccCceecCCC-cccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHcCCCc
Q 023501          200 TPAEVPDYLCCKITLDIFRDPVITPSG-VTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWAY  278 (281)
Q Consensus       200 ~~~~~p~~~~c~i~~~~~~~pv~~~~g-~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~~~~~  278 (281)
                      ....+|.+|.||||+++|.|||+++|| |+||+.||++||..+. +||+||++++..+|+||..|+++|+.|+..++|+-
T Consensus        15 ~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~-~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~~   93 (98)
T 1wgm_A           15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQS   93 (98)
T ss_dssp             CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSC-BCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTCS
T ss_pred             hhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCC-CCCCCCCCCChhhceEcHHHHHHHHHHHHHcchhh
Confidence            345678999999999999999999999 9999999999998765 69999999999999999999999999999999874

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.89  E-value=6e-22  Score=146.45  Aligned_cols=108  Identities=28%  Similarity=0.440  Sum_probs=105.2

Q ss_pred             hchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHH
Q 023501            8 AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYL   87 (281)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (281)
                      ..+|+.++.++++|+.+++.|+|++|+..|+++++++|.++.+|.++|.+|..+|++++|+.++++|++++|+++.+|+.
T Consensus         7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   86 (126)
T 4gco_A            7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR   86 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           88 LGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        88 la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      +|.++..+|++++|+..|+++++++|++
T Consensus        87 lg~~~~~~~~~~~A~~~~~~al~l~P~~  114 (126)
T 4gco_A           87 KAACLVAMREWSKAQRAYEDALQVDPSN  114 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence            9999999999999999999999998873

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.88  E-value=2.1e-23  Score=142.43  Aligned_cols=74  Identities=34%  Similarity=0.520  Sum_probs=68.8

Q ss_pred             CCCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHcC
Q 023501          201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHG  275 (281)
Q Consensus       201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~~  275 (281)
                      ...+|..|.||||+++|.|||+++|||+||+.||++||..+. +||+||.+++..+++||..|+++|+.|+.+|+
T Consensus         8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~-~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~   81 (85)
T 2kr4_A            8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSP-TDPFNRQMLTESMLEPVPELKEQIQAWMREKQ   81 (85)
T ss_dssp             CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCS-BCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCC-CCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence            456789999999999999999999999999999999999765 69999999999999999999999999998764

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.88  E-value=3.2e-23  Score=145.64  Aligned_cols=75  Identities=33%  Similarity=0.521  Sum_probs=69.7

Q ss_pred             CCCCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHcC
Q 023501          200 TPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHG  275 (281)
Q Consensus       200 ~~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~~  275 (281)
                      ....+|..|.||||+++|.|||+++|||+||+.||++||..+. +||+||.+++..+|+||..|+++|+.|+..|+
T Consensus        22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~-~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~   96 (100)
T 2kre_A           22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSP-TDPFNRQTLTESMLEPVPELKEQIQAWMREKQ   96 (100)
T ss_dssp             SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCS-BCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred             hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCC-CCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence            3567799999999999999999999999999999999998655 69999999999999999999999999999875

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.85  E-value=3.2e-20  Score=141.38  Aligned_cols=113  Identities=12%  Similarity=0.004  Sum_probs=109.3

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      .+.+++..+|+.+..+..+|..+++.|+|++|+..|++++.++|+++.+|.++|.+|..+|+|++|+..+++|++++|++
T Consensus        24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~  103 (151)
T 3gyz_A           24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND  103 (151)
T ss_dssp             CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred             CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence            35677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +.+++.+|.+|..+|++++|+..|++++++.|+
T Consensus       104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A          104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999876

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.84  E-value=1.5e-21  Score=131.71  Aligned_cols=76  Identities=36%  Similarity=0.657  Sum_probs=70.2

Q ss_pred             CCCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHcCC
Q 023501          201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGW  276 (281)
Q Consensus       201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~~~  276 (281)
                      ...+|..+.||||.++|.+||+++|||+||+.||.+|+..+...||+||.++...++.||..|+++|+.|+.+|+.
T Consensus         2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~   77 (78)
T 1t1h_A            2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI   77 (78)
T ss_dssp             CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred             CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence            3467889999999999999999999999999999999987455699999999999999999999999999999875

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.83  E-value=1.9e-19  Score=136.48  Aligned_cols=108  Identities=15%  Similarity=0.089  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-------chH-----HHHHHHHHHHHhcCHHHHHHHHHHHHhh-
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN-------VPI-----YWTNRALCHLKRNDWTKVEADCRKAIQL-   77 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~al~l-   77 (281)
                      ...+..++..|+.+++.|+|++|+..|++||+++|+       +..     +|+|+|.++..+|+|++|+.++++||++ 
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~   87 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            346888999999999999999999999999999999       444     9999999999999999999999999999 


Q ss_pred             ------cCcchhHH----HHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501           78 ------DHDSVKGH----YLLGQTLLQRNEYADGIKELEKALNLGRGAKPK  118 (281)
Q Consensus        78 ------~p~~~~a~----~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~  118 (281)
                            +|++.++|    +++|.++..+|++++|+..|+++++++|+....
T Consensus        88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~  138 (159)
T 2hr2_A           88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  138 (159)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence                  99999999    999999999999999999999999999985544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.83  E-value=2.4e-19  Score=132.46  Aligned_cols=105  Identities=18%  Similarity=0.297  Sum_probs=99.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch-------
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV-------   82 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-------   82 (281)
                      .++.|.+++++|+.+++.|+|++|+.+|++|++++|+++.+|.++|.+|..+|+|++|+.++++|++++|.+.       
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a   83 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA   83 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence            4678899999999999999999999999999999999999999999999999999999999999999998764       


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .+++++|.++..+|++++|+..|++++...|+
T Consensus        84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            58899999999999999999999999998765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.83  E-value=2.8e-19  Score=135.78  Aligned_cols=116  Identities=14%  Similarity=0.067  Sum_probs=110.7

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      .+..++..+|+.+..+..+|..++..|+|++|+..|.+++..+|+++.+|.++|.++..+|++++|+..+++++.++|++
T Consensus         9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   88 (148)
T 2vgx_A            9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE   88 (148)
T ss_dssp             SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      +.+++.+|.++..+|++++|+..|+++++++|+++.
T Consensus        89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  124 (148)
T 2vgx_A           89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE  124 (148)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence            999999999999999999999999999999887443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.82  E-value=4.6e-19  Score=133.35  Aligned_cols=116  Identities=12%  Similarity=0.073  Sum_probs=109.2

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      .+..++..+|+.+..+..+|..++..|+|++|+..|.+++..+|+++.+|.++|.++..+|++++|+..+++++.++|++
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   85 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE   85 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            35677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      +.+++.+|.++..+|++++|+..|++++.++|++..
T Consensus        86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  121 (142)
T 2xcb_A           86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA  121 (142)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence            999999999999999999999999999999987444

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.82  E-value=8.5e-19  Score=128.79  Aligned_cols=103  Identities=31%  Similarity=0.448  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ   90 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~   90 (281)
                      |..+..+..+|..++..|+|++|+..|++++..+|+++.+|.++|.++..+|++++|+.+++++++++|.++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcChHHHHHHHHHHHhhcc
Q 023501           91 TLLQRNEYADGIKELEKALNLGR  113 (281)
Q Consensus        91 ~~~~~g~~~~A~~~~~kal~~~p  113 (281)
                      ++..+|++++|+..|++++.++|
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p  103 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDA  103 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCc
Confidence            99999999999999999999984

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.81  E-value=6e-19  Score=135.54  Aligned_cols=104  Identities=22%  Similarity=0.304  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------------------CCCchHHHHHHHHHHHHhcCHHHHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL------------------CPNVPIYWTNRALCHLKRNDWTKVEADCR   72 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~   72 (281)
                      .+.+..++.+|+.+++.|+|++|+..|++++.+                  +|.++.+|.++|.||+++|+|++|+.+++
T Consensus         8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            356889999999999999999999999999999                  77788999999999999999999999999


Q ss_pred             HHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           73 KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        73 ~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +|++++|.++++++.+|.++..+|++++|+..|.+++.++|+
T Consensus        88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  129 (162)
T 3rkv_A           88 EVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA  129 (162)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999887

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.80  E-value=4.3e-19  Score=134.97  Aligned_cols=113  Identities=13%  Similarity=0.090  Sum_probs=106.7

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      ++.+...+|+.+..+..+|..|++.|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..++++++++|+++
T Consensus        20 ~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   99 (150)
T 4ga2_A           20 VQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK   99 (150)
T ss_dssp             HHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH
Confidence            45677788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcChHHHHHH-HHHHHhhccCC
Q 023501           83 KGHYLLGQTLLQRNEYADGIKE-LEKALNLGRGA  115 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~-~~kal~~~p~~  115 (281)
                      .+++.+|.++..+|++++|... ++++++++|++
T Consensus       100 ~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~  133 (150)
T 4ga2_A          100 DLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS  133 (150)
T ss_dssp             HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence            9999999999999999887766 58999998873

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.80  E-value=3.2e-20  Score=129.30  Aligned_cols=72  Identities=24%  Similarity=0.404  Sum_probs=63.4

Q ss_pred             CCCcccccCCcccccCceecC-CCcccccchHHhHhccC-----CCCCCC--CCCC-cCCCCCcccHHHHHHHHHHHHHc
Q 023501          204 VPDYLCCKITLDIFRDPVITP-SGVTYERAVILDHLDKV-----GKFDPI--TREP-LRESQLVPNLAIKEAVRAYMDKH  274 (281)
Q Consensus       204 ~p~~~~c~i~~~~~~~pv~~~-~g~~~~~~~i~~~~~~~-----~~~cP~--~~~~-~~~~~~~~n~~l~~~i~~~~~~~  274 (281)
                      .+..|.||||+++|.+||+++ |||+||+.||.+||..+     ..+||+  |+.. ++..+|+||..|+++|+.|+..+
T Consensus         4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~   83 (94)
T 2yu4_A            4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR   83 (94)
T ss_dssp             CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred             CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence            467899999999999999996 99999999999999864     236999  5555 88889999999999999998876


Q ss_pred             C
Q 023501          275 G  275 (281)
Q Consensus       275 ~  275 (281)
                      +
T Consensus        84 ~   84 (94)
T 2yu4_A           84 H   84 (94)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.78  E-value=1e-17  Score=128.85  Aligned_cols=109  Identities=25%  Similarity=0.402  Sum_probs=104.8

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL   88 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (281)
                      ..+..+..+..+|..++..|+|++|+.+|++++.++|+++.+|.++|.+|..+|+|++|+.+++++++++|.++.+++.+
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   85 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL   85 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           89 GQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        89 a~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      |.++..+|++++|+..|++++.++|+...
T Consensus        86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           86 GLARFDMADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence            99999999999999999999999988554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.78  E-value=3e-18  Score=160.96  Aligned_cols=141  Identities=14%  Similarity=0.137  Sum_probs=122.8

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL   88 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (281)
                      ..|+.++++.++|..+.+.|++++|+.+|++|++++|+++.+|.++|.+|.++|++++|+..+++|++++|+++.+|+.+
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023501           89 GQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVL  165 (281)
Q Consensus        89 a~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (281)
                      |.++..+|++++|++.|+++++++|+...       .+         ...+....+.++++++...++++++.++..
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~-------a~---------~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~  144 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFAD-------AH---------SNLASIHKDSGNIPEAIASYRTALKLKPDF  144 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------HH---------HHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HH---------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999887322       22         222333445677788888888888876653

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.78  E-value=6.9e-18  Score=125.30  Aligned_cols=127  Identities=38%  Similarity=0.604  Sum_probs=112.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG   89 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la   89 (281)
                      .+..+..+..+|..++..|+|++|+..|.+++..+|+++.++.++|.++..+|++++|+..++++++++|.++.+++.+|
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHH
Q 023501           90 QTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWE  138 (281)
Q Consensus        90 ~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~  138 (281)
                      .++..+|++++|+..|.+++.++|+....  ....+...+..+....+.
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~--~~~~~~~~l~~~~~~~~~  131 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSLAKEQRLN--FGDDIPSALRIAKKKRWN  131 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCC--CTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHChhHHHH--HHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998873322  334566666666554443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.77  E-value=2.4e-17  Score=132.02  Aligned_cols=152  Identities=12%  Similarity=0.090  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHH----------------HHHHHHHhcCHHHHHHHHHHHHh
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTN----------------RALCHLKRNDWTKVEADCRKAIQ   76 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~al~   76 (281)
                      .+..+...|..++..|+|++|+..|++++..+|+++.+++.                +|.+|..+|++++|+..++++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999                99999999999999999999999


Q ss_pred             hcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHH-------------------HHH
Q 023501           77 LDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKY-------------------LLW  137 (281)
Q Consensus        77 l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~-------------------~~~  137 (281)
                      ++|+++.+++.+|.++..+|++++|+..|+++++++|++.........+....+....                   ...
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  162 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR  162 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence            9999999999999999999999999999999999998854443333333221111100                   011


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501          138 EQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      .+......+++.++...++++++..|.
T Consensus       163 ~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          163 DGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            222333456677777777777776553

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.77  E-value=8.8e-18  Score=135.49  Aligned_cols=103  Identities=15%  Similarity=0.126  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT   91 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~   91 (281)
                      .++..+..+|..++..|++++|+..|++++..+|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~   82 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA   82 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            33445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHh-----------cChHHHHHHHHHHHhhccC
Q 023501           92 LLQR-----------NEYADGIKELEKALNLGRG  114 (281)
Q Consensus        92 ~~~~-----------g~~~~A~~~~~kal~~~p~  114 (281)
                      +..+           |++++|+..|+++++++|+
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~  116 (217)
T 2pl2_A           83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPR  116 (217)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc
Confidence            5555           5555555555555555554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.76  E-value=2e-17  Score=133.42  Aligned_cols=139  Identities=15%  Similarity=0.058  Sum_probs=119.9

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-----------cCHHHHHHH
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKR-----------NDWTKVEAD   70 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-----------~~~~~A~~~   70 (281)
                      .++.++...|+.+..+..+|..+...|++++|+..|++++.++|+++.++.++|.++..+           |++++|+..
T Consensus        27 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~  106 (217)
T 2pl2_A           27 LFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSV  106 (217)
T ss_dssp             HHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHH
Confidence            356677888999999999999999999999999999999999999999999999999999           999999999


Q ss_pred             HHHHHhhcCcchhHHHHHHHHHHHhc-------ChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 023501           71 CRKAIQLDHDSVKGHYLLGQTLLQRN-------EYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSK  143 (281)
Q Consensus        71 ~~~al~l~p~~~~a~~~la~~~~~~g-------~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  143 (281)
                      ++++++++|+++       .++..+|       ++++|+..|+++++++ +. .      .         .....+....
T Consensus       107 ~~~al~~~P~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~-~------~---------~~~~la~~~~  162 (217)
T 2pl2_A          107 LKDAERVNPRYA-------PLHLQRGLVYALLGERDKAEASLKQALALE-DT-P------E---------IRSALAELYL  162 (217)
T ss_dssp             HHHHHHHCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC-H------H---------HHHHHHHHHH
T ss_pred             HHHHHHhCcccH-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc-h------H---------HHHHHHHHHH
Confidence            999999999875       5666664       7899999999999996 31 1      1         2334555667


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh
Q 023501          144 RSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus       144 ~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      ..++++++...++++++..|.
T Consensus       163 ~~g~~~~A~~~~~~al~~~P~  183 (217)
T 2pl2_A          163 SMGRLDEALAQYAKALEQAPK  183 (217)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTT
T ss_pred             HcCCHHHHHHHHHHHHHhCCC
Confidence            788899999999999987654

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.76  E-value=1.5e-18  Score=120.66  Aligned_cols=79  Identities=25%  Similarity=0.431  Sum_probs=69.6

Q ss_pred             CCCCCCCCcccccCCcccccCceecC-CCcccccchHHhHhccCC-CCCCCCCCCc-CCCCCcccHHHHHHHHHHHHHcC
Q 023501          199 DTPAEVPDYLCCKITLDIFRDPVITP-SGVTYERAVILDHLDKVG-KFDPITREPL-RESQLVPNLAIKEAVRAYMDKHG  275 (281)
Q Consensus       199 ~~~~~~p~~~~c~i~~~~~~~pv~~~-~g~~~~~~~i~~~~~~~~-~~cP~~~~~~-~~~~~~~n~~l~~~i~~~~~~~~  275 (281)
                      .....++..+.||||.++|.+||+++ |||+||+.||..|+...+ ..||+||.++ ....+.+|..|.++|+.|...++
T Consensus         5 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~   84 (92)
T 3ztg_A            5 SEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG   84 (92)
T ss_dssp             SSCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred             cccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence            34566788999999999999999999 999999999999997543 4699999997 56789999999999999999877


Q ss_pred             CC
Q 023501          276 WA  277 (281)
Q Consensus       276 ~~  277 (281)
                      +.
T Consensus        85 ~~   86 (92)
T 3ztg_A           85 YT   86 (92)
T ss_dssp             CC
T ss_pred             HH
Confidence            64

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.74  E-value=1.7e-16  Score=123.95  Aligned_cols=166  Identities=16%  Similarity=0.122  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT   91 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~   91 (281)
                      +.+.++..+|..++..|+|++|+..|+++++++|+++.++.++|.+|..+|++++|+..+.+++..+|.++.++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 023501           92 LLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKE  171 (281)
Q Consensus        92 ~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  171 (281)
                      +...++++.|...+.+++.+.|....       +.         ...+....+.++++++...++++++..|.....-..
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~-------~~---------~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  146 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYAD-------AY---------YKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQS  146 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHH-------HH---------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchH-------HH---------HHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHH
Confidence            99999999999999999999776322       22         222333445677888888888888876643222111


Q ss_pred             -cchhhhhhHHHHHHHHHHHHHH
Q 023501          172 -GFLDEASSTHLKQMEALRQVFR  193 (281)
Q Consensus       172 -~~~~~~~~~~~~~~~~l~~~~~  193 (281)
                       +.+....+++++.+..+.+.+.
T Consensus       147 lg~~~~~~g~~~~A~~~~~~al~  169 (184)
T 3vtx_A          147 IGLAYEGKGLRDEAVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHh
Confidence             2333345566666666666554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.74  E-value=2.1e-17  Score=155.28  Aligned_cols=114  Identities=17%  Similarity=0.139  Sum_probs=109.7

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      .++++++..|+.+.++.++|..+.+.|++++|+..|++|++++|+++.+|.++|.+|..+|++++|+..+++|++++|++
T Consensus        31 ~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~  110 (723)
T 4gyw_A           31 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF  110 (723)
T ss_dssp             HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            35677888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      +.+++.+|.+|..+|++++|+..|+++++++|+.
T Consensus       111 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~  144 (723)
T 4gyw_A          111 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF  144 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999998873

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.74  E-value=8.9e-17  Score=138.29  Aligned_cols=113  Identities=24%  Similarity=0.375  Sum_probs=106.9

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---------------hHHHHHHHHHHHHhcCHHHH
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---------------PIYWTNRALCHLKRNDWTKV   67 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A   67 (281)
                      ++.+....++.+..+..+|..+++.|+|++|+..|.+|+.++|.+               +.+|.++|.||.++|+|++|
T Consensus       136 ~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A  215 (336)
T 1p5q_A          136 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAA  215 (336)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            344556678899999999999999999999999999999999998               69999999999999999999


Q ss_pred             HHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           68 EADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        68 ~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      +..+++|++++|.++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus       216 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  263 (336)
T 1p5q_A          216 IESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN  263 (336)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence            999999999999999999999999999999999999999999998873

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.73  E-value=1.3e-16  Score=142.89  Aligned_cols=114  Identities=28%  Similarity=0.406  Sum_probs=104.8

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---------------hHHHHHHHHHHHHhcCHHHHH
Q 023501            4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---------------PIYWTNRALCHLKRNDWTKVE   68 (281)
Q Consensus         4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~   68 (281)
                      +.+....++.+..++.+|+.+++.|+|++|+..|.+|+.++|.+               ..+|.++|.||+++|+|++|+
T Consensus       258 ~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~  337 (457)
T 1kt0_A          258 EMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV  337 (457)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            44556678899999999999999999999999999999999998               699999999999999999999


Q ss_pred             HHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           69 ADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        69 ~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      .++++|++++|+++++++++|.+|..+|++++|+..|+++++++|++..
T Consensus       338 ~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~  386 (457)
T 1kt0_A          338 ECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA  386 (457)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999999999999999999999999887443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.72  E-value=8.6e-17  Score=117.64  Aligned_cols=100  Identities=14%  Similarity=0.069  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ   94 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~   94 (281)
                      ..+..+|..++..|++++|+..|.+++..+|+++.+|.++|.++..+|++++|+..+++|++++|+++.+++.+|.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcChHHHHHHHHHHHhhccC
Q 023501           95 RNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        95 ~g~~~~A~~~~~kal~~~p~  114 (281)
                      +|++++|+..|+++++++|+
T Consensus        98 ~g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHHHC----
T ss_pred             cCCHHHHHHHHHHHHHhCcC
Confidence            99999999999999999886

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.72  E-value=1.7e-16  Score=128.36  Aligned_cols=100  Identities=16%  Similarity=0.205  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCP-NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL   93 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~   93 (281)
                      ..+..+|..++..|+|++|+..|++++..+| .+..+++++|.++..+|++++|+..++++++++|.++.+++.+|.++.
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   87 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR   87 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            4455555555555555555555555555555 455555555555555555555555555555555555555555555555


Q ss_pred             HhcChHHHHHHHHHHHhhccC
Q 023501           94 QRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        94 ~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .+|++++|+..+++++++.|+
T Consensus        88 ~~~~~~~A~~~~~~al~~~p~  108 (228)
T 4i17_A           88 DMKNNQEYIATLTEGIKAVPG  108 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTT
T ss_pred             HcccHHHHHHHHHHHHHHCCC
Confidence            555555555555555555444

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.71  E-value=5.1e-16  Score=122.99  Aligned_cols=109  Identities=25%  Similarity=0.319  Sum_probs=103.5

Q ss_pred             hhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch----------------HHHHHHHHHHHHhcCHHHHHH
Q 023501            6 GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP----------------IYWTNRALCHLKRNDWTKVEA   69 (281)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~~a~~~~~~~~~~~A~~   69 (281)
                      .....+..+..+..+|..++..|+|++|+..|.+++.+.|.++                .++.++|.++..+|+|++|+.
T Consensus        30 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  109 (198)
T 2fbn_A           30 TDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAID  109 (198)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            3445677889999999999999999999999999999999987                899999999999999999999


Q ss_pred             HHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           70 DCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        70 ~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +++++++++|.++.+++.+|.++..+|++++|+..|++++.++|+
T Consensus       110 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  154 (198)
T 2fbn_A          110 HASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN  154 (198)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            999999999999999999999999999999999999999999876

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.71  E-value=3.4e-16  Score=122.17  Aligned_cols=146  Identities=15%  Similarity=0.093  Sum_probs=129.7

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      +++++..+|+.+..+..+|..++..|++++|+..+.+++...|+++.++..+|.++...++++.|...+.++++++|.+.
T Consensus        28 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~  107 (184)
T 3vtx_A           28 YKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYA  107 (184)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence            56677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEK  162 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (281)
                      .+++.+|.++..+|++++|+..|+++++++|...       .+.         ...+....+.++++++...++++++.+
T Consensus       108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~---------~~lg~~~~~~g~~~~A~~~~~~al~~~  171 (184)
T 3vtx_A          108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI-------RAY---------QSIGLAYEGKGLRDEAVKYFKKALEKE  171 (184)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHH---------HHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh-------hHH---------HHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999988632       222         223334455688888999999999876


Q ss_pred             hh
Q 023501          163 HV  164 (281)
Q Consensus       163 ~~  164 (281)
                      |.
T Consensus       172 p~  173 (184)
T 3vtx_A          172 EK  173 (184)
T ss_dssp             HH
T ss_pred             cc
Confidence            53

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.71  E-value=1.3e-15  Score=123.02  Aligned_cols=109  Identities=14%  Similarity=0.022  Sum_probs=97.8

Q ss_pred             hhhhhhchH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            3 LEAGLAGVA-KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         3 l~~~~~~~~-~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      ++.++...| .....+..+|..++..|+|++|+.+|.+++..+|+++.++.++|.+|..+|++++|+..++++++++|++
T Consensus        30 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  109 (228)
T 4i17_A           30 YSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN  109 (228)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            445555555 6678888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      +..+..++.++..+|..-.....+.+|+..
T Consensus       110 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~  139 (228)
T 4i17_A          110 ATIEKLYAIYYLKEGQKFQQAGNIEKAEEN  139 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHhccHHHHHHH
Confidence            999999999999999887777777777665

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.70  E-value=1e-16  Score=140.15  Aligned_cols=143  Identities=10%  Similarity=-0.018  Sum_probs=120.1

Q ss_pred             hhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC-HHHHHHHHHHHHhhcCcchhH
Q 023501            6 GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRND-WTKVEADCRKAIQLDHDSVKG   84 (281)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~a   84 (281)
                      ++..+|+.+.++..+|..+...|++++|+..|+++|.++|+++.+|.++|.++..+|+ +++|+..+++|++++|++..+
T Consensus        89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a  168 (382)
T 2h6f_A           89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV  168 (382)
T ss_dssp             EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence            4566789999999999999999999999999999999999999999999999999996 999999999999999999999


Q ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501           85 HYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus        85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      |+.+|.++..+|++++|+..|+++++++|++..       .+..++.         ...+.+++.++...+.++++.++.
T Consensus       169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~-------a~~~lg~---------~~~~~g~~~eAl~~~~~al~l~P~  232 (382)
T 2h6f_A          169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYH-------AWQHRQW---------VIQEFKLWDNELQYVDQLLKEDVR  232 (382)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH-------HHHHHHH---------HHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHH-------HHHHHHH---------HHHHcCChHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999887332       2222222         222345566677777777776554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.69  E-value=4.7e-16  Score=124.45  Aligned_cols=94  Identities=18%  Similarity=0.138  Sum_probs=87.8

Q ss_pred             hhhhhhchHHHHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHH
Q 023501            3 LEAGLAGVAKQAEQLRL----------------DGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTK   66 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~----------------~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~   66 (281)
                      ++.++...|+.+..+..                +|..++..|+|++|+..|+++++++|+++.++.++|.++..+|++++
T Consensus        27 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  106 (208)
T 3urz_A           27 FRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKD  106 (208)
T ss_dssp             HHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHH
Confidence            55677778999999998                99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCcchhHHHHHHHHHHHhc
Q 023501           67 VEADCRKAIQLDHDSVKGHYLLGQTLLQRN   96 (281)
Q Consensus        67 A~~~~~~al~l~p~~~~a~~~la~~~~~~g   96 (281)
                      |+..++++++++|+++.+++.+|.+|...|
T Consensus       107 A~~~~~~al~~~P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A          107 ALRMYEKILQLEADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999998876554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.69  E-value=7.5e-17  Score=141.00  Aligned_cols=114  Identities=9%  Similarity=0.008  Sum_probs=109.3

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDR-YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD   80 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~   80 (281)
                      .++.++...|+.+.+|..+|..+...|+ +++|+..|++++.++|+++.+|+++|.++..+|++++|+..+++|++++|+
T Consensus       119 ~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~  198 (382)
T 2h6f_A          119 LTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK  198 (382)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            3566778889999999999999999997 999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      +..+|+.+|.++..+|++++|+..|+++++++|.+
T Consensus       199 ~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~  233 (382)
T 2h6f_A          199 NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN  233 (382)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999998874

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.68  E-value=1.1e-14  Score=111.09  Aligned_cols=105  Identities=29%  Similarity=0.500  Sum_probs=101.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG   89 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la   89 (281)
                      ..+.+..+..+|..++..|+|++|+..|.+++..+|.++.++.++|.++..+|++++|+..++++++++|.++.+++.+|
T Consensus         9 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a   88 (166)
T 1a17_A            9 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA   88 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcChHHHHHHHHHHHhhccC
Q 023501           90 QTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        90 ~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .++..+|++++|+..|.+++.++|.
T Consensus        89 ~~~~~~~~~~~A~~~~~~a~~~~p~  113 (166)
T 1a17_A           89 ASNMALGKFRAALRDYETVVKVKPH  113 (166)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999776

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.68  E-value=2.9e-17  Score=124.80  Aligned_cols=97  Identities=12%  Similarity=0.037  Sum_probs=89.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcCh
Q 023501           19 LDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEY   98 (281)
Q Consensus        19 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~   98 (281)
                      .+|..+..+|++++|+..|.+++..+|.++..++++|.+|+++|+|++|+..++++++++|+++.+|+.+|.++..+|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            36888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCC
Q 023501           99 ADGIKELEKALNLGRGA  115 (281)
Q Consensus        99 ~~A~~~~~kal~~~p~~  115 (281)
                      ++|+..|+++++++|+.
T Consensus        82 ~~A~~~~~~al~~~p~~   98 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQ   98 (150)
T ss_dssp             HHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            99999999999998873

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.67  E-value=3.5e-15  Score=106.81  Aligned_cols=102  Identities=26%  Similarity=0.357  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL   92 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~   92 (281)
                      .+..+..+|..++..|+|++|+..|.+++...|.++.++.++|.++..+|++++|+..++++++++|.++.+++.+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcChHHHHHHHHHHHhhccC
Q 023501           93 LQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        93 ~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ..+|++++|+..+.+++.++|+
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~  104 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEAN  104 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHhhHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999776

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.67  E-value=2.1e-15  Score=117.03  Aligned_cols=114  Identities=22%  Similarity=0.346  Sum_probs=107.7

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHH-HHHhcCH--HHHHHHHHHHHhhcC
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALC-HLKRNDW--TKVEADCRKAIQLDH   79 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~-~~~~~~~--~~A~~~~~~al~l~p   79 (281)
                      ++.++...|..+..+..+|..++..|+|++|+.+|.+++..+|.++.++.++|.+ +...|++  ++|+..++++++++|
T Consensus        33 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p  112 (177)
T 2e2e_A           33 LQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDS  112 (177)
T ss_dssp             HHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC
Confidence            4566677788899999999999999999999999999999999999999999999 8899999  999999999999999


Q ss_pred             cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCC
Q 023501           80 DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK  116 (281)
Q Consensus        80 ~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~  116 (281)
                      .++.+++.+|.++..+|++++|+..|.+++.++|...
T Consensus       113 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A          113 NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence            9999999999999999999999999999999988753

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.67  E-value=1.8e-15  Score=110.29  Aligned_cols=108  Identities=28%  Similarity=0.401  Sum_probs=103.2

Q ss_pred             hhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHH
Q 023501            7 LAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHY   86 (281)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~   86 (281)
                      ....+..+..+..+|..++..|++++|+..|.+++...|.++.++.++|.++...|++++|+..+++++.++|.++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   84 (131)
T 2vyi_A            5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG   84 (131)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence            44578889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           87 LLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        87 ~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .+|.++..+|++++|+..|.+++.++|.
T Consensus        85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~  112 (131)
T 2vyi_A           85 RMGLALSSLNKHVEAVAYYKKALELDPD  112 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence            9999999999999999999999999776

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.66  E-value=8.9e-16  Score=112.63  Aligned_cols=106  Identities=29%  Similarity=0.406  Sum_probs=102.5

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL   88 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (281)
                      ..+..+..+..+|..++..|+|++|+..|.+++..+|.++.++.++|.++...|++++|+..++++++++|.++.+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           89 GQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        89 a~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      |.++..+|++++|+..|++++.++|.
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~~p~  116 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDLDSS  116 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999876

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.66  E-value=2e-17  Score=104.77  Aligned_cols=54  Identities=30%  Similarity=0.544  Sum_probs=49.8

Q ss_pred             cccccCCcccccCceec-CCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccH
Q 023501          207 YLCCKITLDIFRDPVIT-PSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNL  261 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~~-~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~  261 (281)
                      .|.||||+++|.|||++ +|||+|||.||++|+..++ +||+||++++..+|+||.
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~-~cP~t~~~L~~~~Lip~~   57 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG-NDPITNEPLSIEEIVEIV   57 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS-BCTTTCCBCCGGGCEECC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC-CCcCCcCCCChhhcEECc
Confidence            47899999999999999 8999999999999998776 499999999999999984

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.65  E-value=7.3e-17  Score=118.45  Aligned_cols=69  Identities=10%  Similarity=0.086  Sum_probs=62.2

Q ss_pred             CCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCC-CCCcccHHHHHHHHHHHHH
Q 023501          205 PDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRE-SQLVPNLAIKEAVRAYMDK  273 (281)
Q Consensus       205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~-~~~~~n~~l~~~i~~~~~~  273 (281)
                      +..+.||||.++|.+||+++|||+||+.||..|+..+...||+||.++.. ..+.+|..|..+|+.|+..
T Consensus        50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~  119 (124)
T 3fl2_A           50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG  119 (124)
T ss_dssp             HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred             ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence            34678999999999999999999999999999998665569999999987 6899999999999998754

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.65  E-value=2.7e-15  Score=130.66  Aligned_cols=105  Identities=27%  Similarity=0.445  Sum_probs=100.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------------hCCCchHHHHHHHHHHHHhcCHHHHHHHHHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAIT----------------LCPNVPIYWTNRALCHLKRNDWTKVEADCRK   73 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~   73 (281)
                      ..+.+..+..+|+.+++.|+|++|+..|++|+.                .+|.++.+|.++|.+|+++|+|++|+.++++
T Consensus       219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  298 (370)
T 1ihg_A          219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE  298 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            456678899999999999999999999999999                7888899999999999999999999999999


Q ss_pred             HHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           74 AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        74 al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      |++++|.++++++.+|.+|..+|++++|+..|+++++++|+
T Consensus       299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~  339 (370)
T 1ihg_A          299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE  339 (370)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999886

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.65  E-value=1.5e-14  Score=119.37  Aligned_cols=156  Identities=9%  Similarity=0.032  Sum_probs=126.3

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc---ch
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD---SV   82 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~   82 (281)
                      ..+..+..++.+|..++..|+|++|+..|++++...|++   +.+++.+|.+|+.+|+|++|+..+++++++.|+   .+
T Consensus        10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   89 (261)
T 3qky_A           10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP   89 (261)
T ss_dssp             -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence            456778999999999999999999999999999999998   899999999999999999999999999999885   46


Q ss_pred             hHHHHHHHHHHH--------hcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           83 KGHYLLGQTLLQ--------RNEYADGIKELEKALNLGRGAKPKGYIVEDIWQEL-ARAKYLLWEQESSKRSWELQSLKE  153 (281)
Q Consensus        83 ~a~~~la~~~~~--------~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~  153 (281)
                      .+++.+|.++..        +|++++|+..|++++...|++.........+.... .........+......+++.++..
T Consensus        90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  169 (261)
T 3qky_A           90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV  169 (261)
T ss_dssp             HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            799999999999        99999999999999999887544311111111110 111122445556667788999999


Q ss_pred             HHHHHHHHhhh
Q 023501          154 ACEAALEEKHV  164 (281)
Q Consensus       154 ~~~~~l~~~~~  164 (281)
                      .+.++++..+.
T Consensus       170 ~~~~~l~~~p~  180 (261)
T 3qky_A          170 TYEAVFDAYPD  180 (261)
T ss_dssp             HHHHHHHHCTT
T ss_pred             HHHHHHHHCCC
Confidence            99999887665

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=99.65  E-value=4e-16  Score=145.96  Aligned_cols=74  Identities=27%  Similarity=0.512  Sum_probs=68.9

Q ss_pred             CCCCCCcccccCCcccccCceecCCC-cccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHcC
Q 023501          201 PAEVPDYLCCKITLDIFRDPVITPSG-VTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHG  275 (281)
Q Consensus       201 ~~~~p~~~~c~i~~~~~~~pv~~~~g-~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~~  275 (281)
                      ..++|++|.|||+.++|.|||++|+| +||+|++|++|+..++ +||+||++++..+++||+.|+..|++|+.+++
T Consensus       885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~-tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~  959 (968)
T 3m62_A          885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDS-TDPFNRMPLKLEDVTPNEELRQKILCFKKQKK  959 (968)
T ss_dssp             HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCC-BCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCC-CCCCCCCCCCcccccccHHHHHHHHHHHHHHH
Confidence            45789999999999999999999998 6999999999998765 69999999999999999999999999998874

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=3.1e-15  Score=111.90  Aligned_cols=106  Identities=35%  Similarity=0.512  Sum_probs=102.0

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHH
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGH   85 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~   85 (281)
                      ..+..+..+..+|..++..|+|++|+..|++++..+|++   ..++.++|.+|..+|++++|+..++++++++|.++.++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            446788999999999999999999999999999999998   89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           86 YLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        86 ~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +.+|.++..+|++++|+..|++++.++|+
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~  131 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLEPK  131 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999876

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.64  E-value=2.7e-15  Score=109.50  Aligned_cols=103  Identities=28%  Similarity=0.426  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc-------hhH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS-------VKG   84 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-------~~a   84 (281)
                      +.+..+..+|..++..|+|++|+.+|.+++..+|.++.++.++|.++...|++++|+..+++++.+.|.+       +.+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            5678899999999999999999999999999999999999999999999999999999999999999987       999


Q ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           85 HYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ++.+|.++..+|++++|+..|++++.+.|+
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999663

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.64  E-value=8.7e-16  Score=109.08  Aligned_cols=105  Identities=15%  Similarity=0.179  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc--chhHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD--SVKGHYLL   88 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~l   88 (281)
                      |..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++..+|++++|+..++++++++|.  +..+++.+
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l   82 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK   82 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence            4456778899999999999999999999999999999999999999999999999999999999999999  99999999


Q ss_pred             HHHHHHh-cChHHHHHHHHHHHhhccCC
Q 023501           89 GQTLLQR-NEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        89 a~~~~~~-g~~~~A~~~~~kal~~~p~~  115 (281)
                      |.++..+ |++++|++.+.+++...|..
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            9999999 99999999999999998764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.64  E-value=4.3e-16  Score=134.11  Aligned_cols=111  Identities=17%  Similarity=0.279  Sum_probs=99.3

Q ss_pred             hhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch-----------------HHHHHHHHHHHHhcCHHHHHH
Q 023501            7 LAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP-----------------IYWTNRALCHLKRNDWTKVEA   69 (281)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~   69 (281)
                      ....++.+..++.+|+.+++.|+|++|+..|.+|+...|.+.                 .+|.++|.||.++|+|++|+.
T Consensus       172 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~  251 (338)
T 2if4_A          172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG  251 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            345577899999999999999999999999999999999987                 499999999999999999999


Q ss_pred             HHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           70 DCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        70 ~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      +++++++++|++.++++++|.+|..+|++++|+..|+++++++|++..
T Consensus       252 ~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~  299 (338)
T 2if4_A          252 HCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA  299 (338)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence            999999999999999999999999999999999999999999887433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.63  E-value=2.9e-15  Score=109.73  Aligned_cols=100  Identities=13%  Similarity=0.084  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---hhHHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP---IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---VKGHYLL   88 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~l   88 (281)
                      ..+..+|..++..|+|++|+..|.+++...|+++   .++..+|.++...|++++|+..++++++.+|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            4577899999999999999999999999999988   799999999999999999999999999999999   8899999


Q ss_pred             HHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           89 GQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        89 a~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      |.++..+|++++|+..|++++...|+
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~  108 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPG  108 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            99999999999999999999999876

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.63  E-value=6.9e-15  Score=132.25  Aligned_cols=109  Identities=18%  Similarity=0.159  Sum_probs=103.0

Q ss_pred             hhhchHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501            6 GLAGVAKQAEQLRLDGNYYFSKDRY-GAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG   84 (281)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (281)
                      .....+..+..+..+|..++..|+| ++|+.+|++++..+|+++.+|.++|.+|..+|++++|+..++++++++|+ ..+
T Consensus        94 ~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~  172 (474)
T 4abn_A           94 VLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVS  172 (474)
T ss_dssp             HHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHH
T ss_pred             HhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHH
Confidence            3444566889999999999999999 99999999999999999999999999999999999999999999999999 799


Q ss_pred             HHHHHHHHHHh---------cChHHHHHHHHHHHhhccCC
Q 023501           85 HYLLGQTLLQR---------NEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        85 ~~~la~~~~~~---------g~~~~A~~~~~kal~~~p~~  115 (281)
                      ++.+|.++..+         |++++|+..|+++++++|+.
T Consensus       173 ~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  212 (474)
T 4abn_A          173 LQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD  212 (474)
T ss_dssp             HHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence            99999999999         99999999999999998874

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.63  E-value=1.6e-14  Score=111.55  Aligned_cols=102  Identities=16%  Similarity=0.046  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL   92 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~   92 (281)
                      .+..+..+|..++..|++++|+..|.+++...|.++.++..+|.++...|++++|+..++++++++|.++.+++.+|.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   86 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHhcChHHHHHHHHHHHhhccC
Q 023501           93 LQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        93 ~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ...|++++|+..+.+++...|.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~~  108 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANPI  108 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHhcCHHHHHHHHHHHHhcCcH
Confidence            5555555555555555555443

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.63  E-value=1.5e-16  Score=120.25  Aligned_cols=68  Identities=13%  Similarity=0.203  Sum_probs=62.1

Q ss_pred             CCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCC-CCcccHHHHHHHHHHHH
Q 023501          205 PDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRES-QLVPNLAIKEAVRAYMD  272 (281)
Q Consensus       205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~-~~~~n~~l~~~i~~~~~  272 (281)
                      +..+.||||.++|.+||+++|||+||+.||..|+......||+||.++... .+.+|..|.++|+.|+.
T Consensus        76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p  144 (150)
T 1z6u_A           76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP  144 (150)
T ss_dssp             HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred             ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence            456889999999999999999999999999999987655699999999987 89999999999999864

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.62  E-value=5.6e-14  Score=113.61  Aligned_cols=176  Identities=12%  Similarity=0.056  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh---HHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP---IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK---GHY   86 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~---a~~   86 (281)
                      .+..+..+|..++..|+|++|+..|++++...|.++   .+++++|.+|+.+|+|++|+..+++++++.|++..   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            467889999999999999999999999999999864   78999999999999999999999999999999875   899


Q ss_pred             HHHHHHHH------------------hcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHH-----HHHHHHHHHH
Q 023501           87 LLGQTLLQ------------------RNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAK-----YLLWEQESSK  143 (281)
Q Consensus        87 ~la~~~~~------------------~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~  143 (281)
                      .+|.++..                  .|++++|+..|+++++..|++....    .....+..+.     .....+....
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~----~a~~~l~~~~~~~~~~~~~~a~~~~  158 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT----DATKRLVFLKDRLAKYEYSVAEYYT  158 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999986                  5799999999999999988854431    1111111111     1133445556


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhh----hccchhhhhhHHHHHHHHHHHHH
Q 023501          144 RSWELQSLKEACEAALEEKHVLDISR----KEGFLDEASSTHLKQMEALRQVF  192 (281)
Q Consensus       144 ~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~  192 (281)
                      +.+++.++...++++++..|......    .-+......+..++.+..+..+.
T Consensus       159 ~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~  211 (225)
T 2yhc_A          159 ERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA  211 (225)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            77888999999999998766532210    11222334445555555554443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.62  E-value=2.9e-14  Score=117.60  Aligned_cols=105  Identities=14%  Similarity=0.139  Sum_probs=102.7

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG   89 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la   89 (281)
                      ++..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..++++++++|.++.+++.+|
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  118 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  118 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcChHHHHHHHHHHHhhccC
Q 023501           90 QTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        90 ~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .++..+|++++|+..|++++.++|.
T Consensus       119 ~~~~~~g~~~~A~~~~~~a~~~~~~  143 (275)
T 1xnf_A          119 IALYYGGRDKLAQDDLLAFYQDDPN  143 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999876

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.62  E-value=2.1e-14  Score=116.25  Aligned_cols=146  Identities=13%  Similarity=0.106  Sum_probs=119.8

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      ++++++...|..+..+..+|..++..|++++|+..|.+++...|.++.++..+|.++..+|++++|+..++++++++|.+
T Consensus        45 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  124 (243)
T 2q7f_A           45 AFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN  124 (243)
T ss_dssp             THHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence            35566667778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEE  161 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (281)
                      +.+++.+|.++...|++++|+..+++++...|....       +         ....+......+++.++...+.+++..
T Consensus       125 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~---------~~~l~~~~~~~~~~~~A~~~~~~~~~~  188 (243)
T 2q7f_A          125 GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE-------A---------RFQFGMCLANEGMLDEALSQFAAVTEQ  188 (243)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH-------H---------HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH-------H---------HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999775211       1         122223334456667777777777765


Q ss_pred             hh
Q 023501          162 KH  163 (281)
Q Consensus       162 ~~  163 (281)
                      .+
T Consensus       189 ~~  190 (243)
T 2q7f_A          189 DP  190 (243)
T ss_dssp             CT
T ss_pred             Cc
Confidence            44

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.62  E-value=6.9e-14  Score=115.35  Aligned_cols=159  Identities=17%  Similarity=0.093  Sum_probs=125.5

Q ss_pred             hhhhhhchHHH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHH--------hcCHHHHH
Q 023501            3 LEAGLAGVAKQ---AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLK--------RNDWTKVE   68 (281)
Q Consensus         3 l~~~~~~~~~~---a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~--------~~~~~~A~   68 (281)
                      ++.++...|..   +.++..+|..++..|+|++|+..|++++...|++   +.+++.+|.+++.        +|++++|+
T Consensus        38 ~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~  117 (261)
T 3qky_A           38 FKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAI  117 (261)
T ss_dssp             HHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHH
T ss_pred             HHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHH
Confidence            44555555555   8999999999999999999999999999998854   6789999999999        99999999


Q ss_pred             HHHHHHHhhcCcchhHH-----------------HHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHH
Q 023501           69 ADCRKAIQLDHDSVKGH-----------------YLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELAR  131 (281)
Q Consensus        69 ~~~~~al~l~p~~~~a~-----------------~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~  131 (281)
                      ..++++++..|++..+.                 +.+|.+|..+|++++|+..|+++++..|++..    .......++.
T Consensus       118 ~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~a~~~l~~  193 (261)
T 3qky_A          118 EAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW----ADDALVGAMR  193 (261)
T ss_dssp             HHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT----HHHHHHHHHH
T ss_pred             HHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch----HHHHHHHHHH
Confidence            99999999999987766                 88999999999999999999999999887433    2233333333


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023501          132 AKYLLWEQ-ESSKRSWELQSLKEACEAALEEKHVL  165 (281)
Q Consensus       132 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (281)
                      +...+... ......+++.++...+.++++..|..
T Consensus       194 ~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  228 (261)
T 3qky_A          194 AYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS  228 (261)
T ss_dssp             HHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence            32221110 00124588888999999999876643

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.61  E-value=9.1e-15  Score=134.20  Aligned_cols=147  Identities=14%  Similarity=0.051  Sum_probs=118.7

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      .+++++...|+.+..+..+|..++..|+|++|+..|+++++.+|+++.++.++|.+|..+|++++|+..++++++++|++
T Consensus        11 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   90 (568)
T 2vsy_A           11 QLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH   90 (568)
T ss_dssp             ----------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            35667777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRS---WELQSLKEACEAA  158 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  158 (281)
                      +.+++.+|.++..+|++++|+..|+++++++|+...       ....+         +......   ++.+++...+.++
T Consensus        91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~l---------~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY-------ITAQL---------LNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------HHHHH---------HHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHH---------HHHHHHhhccccHHHHHHHHHHH
Confidence            999999999999999999999999999999876322       22222         2222334   5667777777877


Q ss_pred             HHHhhh
Q 023501          159 LEEKHV  164 (281)
Q Consensus       159 l~~~~~  164 (281)
                      ++..+.
T Consensus       155 l~~~p~  160 (568)
T 2vsy_A          155 VAQGVG  160 (568)
T ss_dssp             HHHTCC
T ss_pred             HhcCCc
Confidence            776553

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.61  E-value=7.3e-15  Score=132.11  Aligned_cols=146  Identities=17%  Similarity=0.194  Sum_probs=125.4

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh---------cCHHHHHHHHH
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKR---------NDWTKVEADCR   72 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~   72 (281)
                      .+++++...|+.+..+..+|..++..|+|++|+.+|.+++.++|+ +.++.++|.++..+         |++++|+..++
T Consensus       125 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~  203 (474)
T 4abn_A          125 LLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK  203 (474)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHH
Confidence            356677778899999999999999999999999999999999999 79999999999999         99999999999


Q ss_pred             HHHhhcCcchhHHHHHHHHHHHh--------cChHHHHHHHHHHHhhcc---CCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 023501           73 KAIQLDHDSVKGHYLLGQTLLQR--------NEYADGIKELEKALNLGR---GAKPKGYIVEDIWQELARAKYLLWEQES  141 (281)
Q Consensus        73 ~al~l~p~~~~a~~~la~~~~~~--------g~~~~A~~~~~kal~~~p---~~~~~~~~~~~~~~~l~~~~~~~~~~~~  141 (281)
                      +|++++|+++.+++.+|.++..+        |++++|+..|+++++++|   ...       .++         ...+..
T Consensus       204 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-------~~~---------~~lg~~  267 (474)
T 4abn_A          204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNP-------DLH---------LNRATL  267 (474)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCH-------HHH---------HHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCH-------HHH---------HHHHHH
Confidence            99999999999999999999999        999999999999999988   421       222         222333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Q 023501          142 SKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus       142 ~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      ....+++.++...+.++++..+.
T Consensus       268 ~~~~g~~~~A~~~~~~al~l~p~  290 (474)
T 4abn_A          268 HKYEESYGEALEGFSQAAALDPA  290 (474)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC
Confidence            34456777788888888776654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.60  E-value=4.2e-14  Score=125.12  Aligned_cols=157  Identities=17%  Similarity=0.127  Sum_probs=123.0

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      +..++..+|..+..+..+|..++..|+|++|+..|++++..+|.++.++..+|.++..+|++++|+..++++++++|.++
T Consensus        15 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~   94 (450)
T 2y4t_A           15 TENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT   94 (450)
T ss_dssp             --------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             ccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence            34566678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELA---RAKYLLWEQESSKRSWELQSLKEACEAAL  159 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (281)
                      .+++.+|.++..+|++++|+..|++++.++|....    .......+.   ........+......+++.++...+.+++
T Consensus        95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~  170 (450)
T 2y4t_A           95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENE----EKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL  170 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh----hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999776220    002222111   11223333444555677777777777777


Q ss_pred             HHhh
Q 023501          160 EEKH  163 (281)
Q Consensus       160 ~~~~  163 (281)
                      +..+
T Consensus       171 ~~~~  174 (450)
T 2y4t_A          171 EVCV  174 (450)
T ss_dssp             HHCT
T ss_pred             HhCC
Confidence            6544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.60  E-value=7.7e-15  Score=110.92  Aligned_cols=90  Identities=8%  Similarity=0.024  Sum_probs=84.7

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501           25 FSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDW----------TKVEADCRKAIQLDHDSVKGHYLLGQTLLQ   94 (281)
Q Consensus        25 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~l~p~~~~a~~~la~~~~~   94 (281)
                      -+.+.|++|+..|.++++++|+++.+|.++|.++..++++          ++|+..+++||+++|++..+|+.+|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3456799999999999999999999999999999999875          599999999999999999999999999998


Q ss_pred             hc-----------ChHHHHHHHHHHHhhccC
Q 023501           95 RN-----------EYADGIKELEKALNLGRG  114 (281)
Q Consensus        95 ~g-----------~~~~A~~~~~kal~~~p~  114 (281)
                      +|           ++++|+..|++|++++|+
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~  123 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPD  123 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence            85           899999999999999887

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.60  E-value=7.4e-14  Score=119.13  Aligned_cols=148  Identities=16%  Similarity=0.136  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL   92 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~   92 (281)
                      +++.+..+|..++..|+|++|+..|.+++..+|+++.++.++|.++..+|++++|+..++++++++|.++.+++.+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501           93 LQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQEL---ARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus        93 ~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      ...|++++|+..|.+++.++|....    .......+   .........+......+++.++...+.++++..+.
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  152 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQE----EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW  152 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccC----hHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999772100    11222222   12222333344555667777777777777766543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.60  E-value=4.5e-14  Score=115.09  Aligned_cols=110  Identities=31%  Similarity=0.414  Sum_probs=105.0

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501            4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK   83 (281)
Q Consensus         4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (281)
                      +.+....|..+..+..+|..++..|+|++|+..|.+++..+|.++.++.++|.++..+|++++|+..++++++++|.++.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~  208 (258)
T 3uq3_A          129 EAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR  208 (258)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHH
Confidence            34455788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501           84 GHYLLGQTLLQRNEYADGIKELEKALNLGR  113 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p  113 (281)
                      +++.+|.++..+|++++|+..++++++++|
T Consensus       209 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  238 (258)
T 3uq3_A          209 AYIRKATAQIAVKEYASALETLDAARTKDA  238 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhCh
Confidence            999999999999999999999999999983

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.60  E-value=9.4e-16  Score=116.55  Aligned_cols=119  Identities=11%  Similarity=0.003  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHH
Q 023501           30 YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKAL  109 (281)
Q Consensus        30 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal  109 (281)
                      +..+-..|.+++.++|+++.+++++|.+++..|+|++|+..+++++.++|.++.+|+.+|.++..+|++++|+..|++++
T Consensus        18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al   97 (151)
T 3gyz_A           18 AINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF   97 (151)
T ss_dssp             HHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            33344667888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501          110 NLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus       110 ~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      +++|++..                .....+......++++++...++++++..+.
T Consensus        98 ~l~P~~~~----------------~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A           98 ALGKNDYT----------------PVFHTGQCQLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             HHSSSCCH----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             hhCCCCcH----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99988444                2333444455668888899999999887543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.60  E-value=1.5e-14  Score=125.96  Aligned_cols=111  Identities=17%  Similarity=0.148  Sum_probs=77.4

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501            4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK   83 (281)
Q Consensus         4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (281)
                      ..+....|+.+..+..+|..++..|++++|+.++++++..+|.++.+|..+|.++...|++++|+..++++++++|+++.
T Consensus        23 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  102 (388)
T 1w3b_A           23 MQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID  102 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHH
Confidence            34455566666666677777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           84 GHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +++.+|.++...|++++|+..|.++++++|+
T Consensus       103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  133 (388)
T 1w3b_A          103 GYINLAAALVAAGDMEGAVQAYVSALQYNPD  133 (388)
T ss_dssp             HHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            7777777777777777777777777776665

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.59  E-value=3.5e-14  Score=122.48  Aligned_cols=75  Identities=16%  Similarity=0.067  Sum_probs=38.8

Q ss_pred             hhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc
Q 023501            6 GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD   80 (281)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~   80 (281)
                      ++...|..+..+..+|..++..|++++|+..|.+++..+|+++.++.++|.+|..+|++++|+..++++++++|.
T Consensus        91 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  165 (365)
T 4eqf_A           91 AILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK  165 (365)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH
T ss_pred             HHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc
Confidence            333344445555555555555555555555555555555555555555555555555555555555555544443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.59  E-value=1.7e-13  Score=109.31  Aligned_cols=141  Identities=16%  Similarity=0.104  Sum_probs=112.2

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL   88 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (281)
                      .+|..+..+..+|..++..|++++|+..|.+++...|.++.++..+|.++...|++++|+..++++++++|.+..+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   82 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY   82 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence            35677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh-cChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501           89 GQTLLQR-NEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKH  163 (281)
Q Consensus        89 a~~~~~~-g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (281)
                      |.++... |++++|+..+++++. .|..+.    ...+...         .+......+++.++...+.++++..+
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~----~~~~~~~---------l~~~~~~~~~~~~A~~~~~~~~~~~~  144 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALA-DPTYPT----PYIANLN---------KGICSAKQGQFGLAEAYLKRSLAAQP  144 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHT-STTCSC----HHHHHHH---------HHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHc-CcCCcc----hHHHHHH---------HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999999 999999999999998 332221    1122222         22223344566666666777666544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.59  E-value=4.8e-14  Score=122.69  Aligned_cols=145  Identities=17%  Similarity=0.046  Sum_probs=112.7

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501            4 EAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK   83 (281)
Q Consensus         4 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (281)
                      +.++...|..+..+..+|..++..|++++|+..|++++..+|+++.+|.++|.++...|++++|+..++++++++|++..
T Consensus        57 ~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  136 (388)
T 1w3b_A           57 TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC  136 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence            44555667778888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501           84 GHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKH  163 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (281)
                      ++..+|.++..+|++++|+..|.+++..+|+...                .....+......+++.++...+++++...+
T Consensus       137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  200 (388)
T 1w3b_A          137 VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV----------------AWSNLGCVFNAQGEIWLAIHHFEKAVTLDP  200 (388)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH----------------HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            8888888888888888888888888888665211                122233444556777778888888877655


Q ss_pred             h
Q 023501          164 V  164 (281)
Q Consensus       164 ~  164 (281)
                      .
T Consensus       201 ~  201 (388)
T 1w3b_A          201 N  201 (388)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.59  E-value=3.5e-14  Score=102.49  Aligned_cols=102  Identities=29%  Similarity=0.482  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL   92 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~   92 (281)
                      .+..+..+|..++..|++++|+..|.+++...|.++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcChHHHHHHHHHHHhhccC
Q 023501           93 LQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        93 ~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ...|++++|+..+++++.++|.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~  109 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPN  109 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHhcCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999776

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.58  E-value=2e-15  Score=141.60  Aligned_cols=140  Identities=7%  Similarity=-0.034  Sum_probs=119.1

Q ss_pred             hchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHH
Q 023501            8 AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYL   87 (281)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (281)
                      ...|+.+..+..+|..++..|+|++|+..|+++++.+|+++.+|+++|.++..+|++++|+..+++|++++|+++.+++.
T Consensus       427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~  506 (681)
T 2pzi_A          427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA  506 (681)
T ss_dssp             -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred             cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            56688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501           88 LGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus        88 la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      +|.++..+|++++ +..|+++++++|+...       .         ....+....+.++++++...++++++..+.
T Consensus       507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~-------a---------~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  566 (681)
T 2pzi_A          507 LAATAELAGNTDE-HKFYQTVWSTNDGVIS-------A---------AFGLARARSAEGDRVGAVRTLDEVPPTSRH  566 (681)
T ss_dssp             HHHHHHHHTCCCT-TCHHHHHHHHCTTCHH-------H---------HHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred             HHHHHHHcCChHH-HHHHHHHHHhCCchHH-------H---------HHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence            9999999999999 9999999999887332       1         122233334456666677667666655443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.58  E-value=3.4e-14  Score=115.01  Aligned_cols=146  Identities=13%  Similarity=0.133  Sum_probs=124.7

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      ++.+....+..+..+..+|..++..|++++|+..|.+++...|.++.++..+|.++...|++++|+..++++++++|.++
T Consensus        80 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~  159 (243)
T 2q7f_A           80 YDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDT  159 (243)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccH
Confidence            44556666778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEK  162 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (281)
                      .+++.+|.++...|++++|+..+.+++...|...       .+.         ...+......++..++...+.++++..
T Consensus       160 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~---------~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          160 EARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA-------DAF---------YNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCH-------HHH---------HHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-------HHH---------HHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            9999999999999999999999999999977521       122         222333345577777888888888765


Q ss_pred             hh
Q 023501          163 HV  164 (281)
Q Consensus       163 ~~  164 (281)
                      +.
T Consensus       224 p~  225 (243)
T 2q7f_A          224 PD  225 (243)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.4e-15  Score=107.03  Aligned_cols=68  Identities=22%  Similarity=0.242  Sum_probs=62.0

Q ss_pred             CcccccCCcccccCceec-CCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHc
Q 023501          206 DYLCCKITLDIFRDPVIT-PSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKH  274 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv~~-~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~  274 (281)
                      ..+.||||.+.+.+||++ +|||+||+.||..|+..+. .||+||.++...++.+|..+.++|+.|....
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~   89 (99)
T 2y43_A           21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKT-QCPTCCVTVTEPDLKNNRILDELVKSLNFAR   89 (99)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCC-BCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred             CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCC-CCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence            467899999999999987 8999999999999998665 5999999999889999999999999997654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=4.8e-14  Score=114.93  Aligned_cols=144  Identities=14%  Similarity=0.163  Sum_probs=121.2

Q ss_pred             hhhhhchHHH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------------------------hCCCchHH
Q 023501            4 EAGLAGVAKQ-------AEQLRLDGNYYFSKDRYGAAIDAYTEAIT--------------------------LCPNVPIY   50 (281)
Q Consensus         4 ~~~~~~~~~~-------a~~~~~~g~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~   50 (281)
                      +.++...|+.       +..+..+|..+...|++++|+.+|.+++.                          .+|.++.+
T Consensus        62 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  141 (258)
T 3uq3_A           62 NDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEE  141 (258)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHH
Confidence            4445545554       89999999999999999999999999999                          66778899


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHH
Q 023501           51 WTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELA  130 (281)
Q Consensus        51 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~  130 (281)
                      +.++|.++...|++++|+..++++++++|.++.+++.+|.++..+|++++|+..+.+++.++|...       ..     
T Consensus       142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~-----  209 (258)
T 3uq3_A          142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV-------RA-----  209 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HH-----
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHH-------HH-----
Confidence            999999999999999999999999999999999999999999999999999999999999977621       11     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501          131 RAKYLLWEQESSKRSWELQSLKEACEAALEEKH  163 (281)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (281)
                          ....+......++..++...+.++++..+
T Consensus       210 ----~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  238 (258)
T 3uq3_A          210 ----YIRKATAQIAVKEYASALETLDAARTKDA  238 (258)
T ss_dssp             ----HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHhhHHHHHHHHHHHHHhCh
Confidence                22233334455777888888888887653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.58  E-value=7.9e-14  Score=101.72  Aligned_cols=132  Identities=26%  Similarity=0.392  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ   94 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~   94 (281)
                      ..+..+|..++..|++++|+..|.+++...|.++..+..+|.++...|++++|+..+++++..+|.++.+++.+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023501           95 RNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEK  162 (281)
Q Consensus        95 ~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (281)
                      .|++++|+..+.+++...|...       .+..         ..+......++..++...+..++...
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~-------~~~~---------~la~~~~~~~~~~~A~~~~~~~~~~~  133 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSA-------EAWY---------NLGNAYYKQGDYDEAIEYYQKALELD  133 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCH-------HHHH---------HHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred             hcCHHHHHHHHHHHHHhCCCCh-------HHHH---------HHHHHHHHHccHHHHHHHHHHHHccC
Confidence            9999999999999999976521       1111         11222334456666777777666543

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.58  E-value=9.9e-16  Score=123.17  Aligned_cols=68  Identities=16%  Similarity=0.192  Sum_probs=61.2

Q ss_pred             CCcccccCCcccccCcee-cCCCcccccchHHhHhccCC-CCCCC--CCCCcCCCCCcccHHHHHHHHHHHH
Q 023501          205 PDYLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVG-KFDPI--TREPLRESQLVPNLAIKEAVRAYMD  272 (281)
Q Consensus       205 p~~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~-~~cP~--~~~~~~~~~~~~n~~l~~~i~~~~~  272 (281)
                      ...+.||||+.+|.+||+ +.|||+||+.||.+||..++ ..||+  |++++...+|+||..|+++|+.|..
T Consensus       179 ~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~  250 (267)
T 3htk_C          179 KIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKM  250 (267)
T ss_dssp             BCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHH
T ss_pred             ceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHH
Confidence            457999999999999998 59999999999999998643 35999  9999999999999999999999855

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.57  E-value=7.8e-14  Score=113.81  Aligned_cols=97  Identities=15%  Similarity=0.154  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL   93 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~   93 (281)
                      +..+..+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..++++++++|.+..+++.+|.++.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HhcChHHHHHHHHHHHh
Q 023501           94 QRNEYADGIKELEKALN  110 (281)
Q Consensus        94 ~~g~~~~A~~~~~kal~  110 (281)
                      ..|++++|+..+++++.
T Consensus       117 ~~g~~~~A~~~~~~~~~  133 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQ  133 (252)
T ss_dssp             HTTCHHHHHHHHHHHTT
T ss_pred             HHhHHHHHHHHHHHHHh
Confidence            77777777777777777

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.57  E-value=9.6e-14  Score=110.74  Aligned_cols=145  Identities=12%  Similarity=0.029  Sum_probs=122.6

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-cCHHHHHHHHHHHHh--hcC
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKR-NDWTKVEADCRKAIQ--LDH   79 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~--l~p   79 (281)
                      ++.++...|..+..+..+|..+...|++++|+.+|.+++...|.++.++.++|.++... |++++|+..++++++  .+|
T Consensus        31 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~  110 (225)
T 2vq2_A           31 IEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP  110 (225)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCS
T ss_pred             HHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCc
Confidence            44556666778899999999999999999999999999999999999999999999999 999999999999999  677


Q ss_pred             cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           80 DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAAL  159 (281)
Q Consensus        80 ~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (281)
                      .+..+++.+|.++...|++++|+..+.+++...|...       .+.         ...+......+++.++...+.+++
T Consensus       111 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~---------~~la~~~~~~~~~~~A~~~~~~~~  174 (225)
T 2vq2_A          111 TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP-------PAF---------KELARTKMLAGQLGDADYYFKKYQ  174 (225)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-------HHH---------HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-------hHH---------HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            7889999999999999999999999999999977621       111         222233344567777888888887


Q ss_pred             HHhh
Q 023501          160 EEKH  163 (281)
Q Consensus       160 ~~~~  163 (281)
                      ...+
T Consensus       175 ~~~~  178 (225)
T 2vq2_A          175 SRVE  178 (225)
T ss_dssp             HHHC
T ss_pred             HhCC
Confidence            7655

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.57  E-value=5.7e-14  Score=111.86  Aligned_cols=141  Identities=19%  Similarity=0.139  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ   90 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~   90 (281)
                      ...+..+..+|..++..|+|++|+..|.+++  +| ++.++.++|.+|..+|++++|+..++++++++|.++.+++.+|.
T Consensus         3 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~   79 (213)
T 1hh8_A            3 LVEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM   79 (213)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            4567778999999999999999999999996  34 78999999999999999999999999999999999999999999


Q ss_pred             HHHHhcChHHHHHHHHHHHhhccCCCCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           91 TLLQRNEYADGIKELEKALNLGRGAKPK---------GYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEE  161 (281)
Q Consensus        91 ~~~~~g~~~~A~~~~~kal~~~p~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (281)
                      ++..+|++++|+..|++++.+.|.+...         ......+.         ...+......+++.++...+.++++.
T Consensus        80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVL---------YNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHH---------HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHH---------HHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            9999999999999999999998864410         00111222         23333344567888888889998876


Q ss_pred             hh
Q 023501          162 KH  163 (281)
Q Consensus       162 ~~  163 (281)
                      .+
T Consensus       151 ~p  152 (213)
T 1hh8_A          151 KS  152 (213)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.57  E-value=9.9e-14  Score=107.08  Aligned_cols=145  Identities=13%  Similarity=0.024  Sum_probs=124.8

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      ++.+....|..+..+..+|..++..|++++|+.+|.+++...|.++.++.++|.++...|++++|+..++++++++|.++
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~  110 (186)
T 3as5_A           31 LEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF  110 (186)
T ss_dssp             HTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH
Confidence            44556666778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEK  162 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (281)
                      .+++.+|.++...|++++|+..+++++...|....                .....+......++..++...+.++++..
T Consensus       111 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~  174 (186)
T 3as5_A          111 NVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK----------------VHRAIAFSYEQMGRHEEALPHFKKANELD  174 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchH----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999765211                22333444455677778888888877754


Q ss_pred             h
Q 023501          163 H  163 (281)
Q Consensus       163 ~  163 (281)
                      +
T Consensus       175 ~  175 (186)
T 3as5_A          175 E  175 (186)
T ss_dssp             H
T ss_pred             C
Confidence            4

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.57  E-value=1.3e-15  Score=107.21  Aligned_cols=69  Identities=19%  Similarity=0.190  Sum_probs=61.4

Q ss_pred             CcccccCCcccccCcee-cCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHc
Q 023501          206 DYLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKH  274 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~  274 (281)
                      ..+.||||.++|.+||+ ++|||+||+.||.+|+......||+||.++...++++|..+..+++.+-+..
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~   90 (100)
T 3lrq_A           21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ   90 (100)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred             CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence            46789999999999999 9999999999999999977446999999999999999998888888775543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.57  E-value=9.7e-14  Score=117.25  Aligned_cols=170  Identities=12%  Similarity=0.053  Sum_probs=80.0

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN-DWTKVEADCRKAIQLDHDSVKGHYLL   88 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~l   88 (281)
                      .|.....+...|..++..|++++|+..+.+++..+|.++.++..+|.++...| ++++|+..++++++++|.++.+++.+
T Consensus        52 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  131 (330)
T 3hym_B           52 DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAY  131 (330)
T ss_dssp             CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHH
T ss_pred             CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            33344444444445555555555555555555555555555555555555555 45555555555555555555555555


Q ss_pred             HHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 023501           89 GQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDIS  168 (281)
Q Consensus        89 a~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  168 (281)
                      |.++...|++++|+..+.+++.+.|.....                ....+......+++.++...+.++++..+.....
T Consensus       132 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  195 (330)
T 3hym_B          132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLP----------------MLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFV  195 (330)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTCSHH----------------HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhccccHHH----------------HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHH
Confidence            555555555555555555555554431110                1111222233455566666666666544332111


Q ss_pred             h-hccchhhhhhHHHHHHHHHHHHHHHh
Q 023501          169 R-KEGFLDEASSTHLKQMEALRQVFRKA  195 (281)
Q Consensus       169 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~  195 (281)
                      - .-+......+.+++.+..+...+...
T Consensus       196 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~  223 (330)
T 3hym_B          196 MHEVGVVAFQNGEWKTAEKWFLDALEKI  223 (330)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence            0 01222224455566666666655544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.57  E-value=1.8e-14  Score=105.97  Aligned_cols=90  Identities=14%  Similarity=0.194  Sum_probs=85.8

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      +++++..+|..+..+..+|..++..|++++|+..|+++++++|+++.+|.++|.+|..+|++++|+.+++++++++|++.
T Consensus        36 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~  115 (126)
T 4gco_A           36 YNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE  115 (126)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHH
Q 023501           83 KGHYLLGQTL   92 (281)
Q Consensus        83 ~a~~~la~~~   92 (281)
                      .++..++.++
T Consensus       116 ~a~~~l~~~l  125 (126)
T 4gco_A          116 EAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.56  E-value=3.4e-15  Score=108.12  Aligned_cols=89  Identities=13%  Similarity=0.117  Sum_probs=81.8

Q ss_pred             hcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHH
Q 023501           26 SKDRYGAAIDAYTEAITL---CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGI  102 (281)
Q Consensus        26 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~  102 (281)
                      ..|+|++|+.+|++++..   +|+++.++.++|.+|..+|+|++|+..++++++++|+++.+++.+|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   58899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccC
Q 023501          103 KELEKALNLGRG  114 (281)
Q Consensus       103 ~~~~kal~~~p~  114 (281)
                      ..+++++...|+
T Consensus        82 ~~~~~al~~~p~   93 (117)
T 3k9i_A           82 ELLLKIIAETSD   93 (117)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHhCCC
Confidence            999999999876

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.56  E-value=2e-14  Score=107.36  Aligned_cols=62  Identities=16%  Similarity=0.262  Sum_probs=50.0

Q ss_pred             cccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHH
Q 023501          207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYM  271 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~  271 (281)
                      ++.||||.+.|.+||++||||+||..||..|+..+. .||+||.++...  .+|..+...|+.++
T Consensus        53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~--~~~~~~~~~i~~~~  114 (138)
T 4ayc_A           53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI-ECPICRKDIKSK--TYSLVLDNCINKMV  114 (138)
T ss_dssp             HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCS-BCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred             cCCCcccCcccCCceECCCCCCccHHHHHHHHHcCC-cCCCCCCcCCCC--CCccchhHHHHHHH
Confidence            578999999999999999999999999999998766 599999998743  23444445555443

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.56  E-value=1.5e-16  Score=107.23  Aligned_cols=66  Identities=18%  Similarity=0.269  Sum_probs=57.1

Q ss_pred             CCCCCCcccccCCcccccCceecCCCcccccchHHhHhccC------CCCCCCCCCCcCCCCCcccHHHHHH
Q 023501          201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKV------GKFDPITREPLRESQLVPNLAIKEA  266 (281)
Q Consensus       201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~------~~~cP~~~~~~~~~~~~~n~~l~~~  266 (281)
                      ...+...+.||||.+.+.+||+++|||+||+.||..|+...      ...||+||.++...++.+|..|.++
T Consensus         6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l   77 (79)
T 2egp_A            6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI   77 (79)
T ss_dssp             SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred             HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence            45567789999999999999999999999999999999863      3469999999998889999766544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.56  E-value=4.3e-15  Score=105.77  Aligned_cols=94  Identities=22%  Similarity=0.371  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc------hhHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS------VKGHY   86 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------~~a~~   86 (281)
                      .+..+..+|..++..|+|++|+..|++++..+|+++.++.++|.++..+|++++|+..++++++++|++      ..+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999999999999      99999


Q ss_pred             HHHHHHHHhcChHHHHHHHH
Q 023501           87 LLGQTLLQRNEYADGIKELE  106 (281)
Q Consensus        87 ~la~~~~~~g~~~~A~~~~~  106 (281)
                      .+|.++..+|+++.|+..++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHH
Confidence            99999999999888776654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.56  E-value=1.2e-13  Score=116.67  Aligned_cols=144  Identities=14%  Similarity=0.013  Sum_probs=121.4

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKD-RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      ++.++...|..+..+..+|..++..| ++++|+.+|.+++..+|.++.++..+|.++...|++++|+..+++++++.|.+
T Consensus        79 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  158 (330)
T 3hym_B           79 SHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC  158 (330)
T ss_dssp             HHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc
Confidence            45566667788899999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEE  161 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (281)
                      ..+++.+|.++...|++++|+..+++++...|...       .+.         ...+......+++.++...+.+++..
T Consensus       159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~---------~~l~~~~~~~~~~~~A~~~~~~a~~~  222 (330)
T 3hym_B          159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP-------FVM---------HEVGVVAFQNGEWKTAEKWFLDALEK  222 (330)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH-------HHH---------HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh-------HHH---------HHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999977632       111         12222333456666777777777765


Q ss_pred             h
Q 023501          162 K  162 (281)
Q Consensus       162 ~  162 (281)
                      .
T Consensus       223 ~  223 (330)
T 3hym_B          223 I  223 (330)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.56  E-value=4.4e-13  Score=114.26  Aligned_cols=157  Identities=17%  Similarity=0.195  Sum_probs=129.4

Q ss_pred             hhhhhchH---HHHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHH
Q 023501            4 EAGLAGVA---KQAEQLRLD------------GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVE   68 (281)
Q Consensus         4 ~~~~~~~~---~~a~~~~~~------------g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~   68 (281)
                      +.+....|   +....+..+            |..++..|++++|+..|.+++...|.++.++..+|.++..+|++++|+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  174 (359)
T 3ieg_A           95 KKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAI  174 (359)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHH
Confidence            34444455   556665555            799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           69 ADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWEL  148 (281)
Q Consensus        69 ~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  148 (281)
                      ..++++++++|.++.+++.+|.++...|++++|+..+.+++...|+...    .-.....+......+..+....+.+++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~  250 (359)
T 3ieg_A          175 SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR----CFAHYKQVKKLNKLIESAEELIRDGRY  250 (359)
T ss_dssp             HHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchH----HHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence            9999999999999999999999999999999999999999999776332    122233334444455556666777888


Q ss_pred             HHHHHHHHHHHHHhhh
Q 023501          149 QSLKEACEAALEEKHV  164 (281)
Q Consensus       149 ~~~~~~~~~~l~~~~~  164 (281)
                      .++...+.+++...+.
T Consensus       251 ~~A~~~~~~~~~~~~~  266 (359)
T 3ieg_A          251 TDATSKYESVMKTEPS  266 (359)
T ss_dssp             HHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            8898888888876554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.56  E-value=1e-13  Score=101.14  Aligned_cols=112  Identities=28%  Similarity=0.429  Sum_probs=104.1

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      ++.+....+..+..+..+|..++..|++++|+..|.+++...|.++.++.++|.++...|++++|+..++++++..|.+.
T Consensus        24 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  103 (136)
T 2fo7_A           24 YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA  103 (136)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence            34445556667888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .+++.+|.++...|++++|+..+.+++..+|.
T Consensus       104 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A          104 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            99999999999999999999999999999775

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.55  E-value=5.2e-15  Score=107.32  Aligned_cols=65  Identities=17%  Similarity=0.232  Sum_probs=59.3

Q ss_pred             CcccccCCcccccCceec-CCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHH
Q 023501          206 DYLCCKITLDIFRDPVIT-PSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDK  273 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv~~-~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~  273 (281)
                      ..+.||||.++|.+||++ +|||+||+.||..|+.   ..||+|+.++...++.+|..|..+|+.+...
T Consensus        21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~   86 (117)
T 1jm7_B           21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKL   86 (117)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred             hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHH
Confidence            468899999999999998 9999999999999997   3599999999888999999999999988543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.55  E-value=7.5e-13  Score=118.69  Aligned_cols=103  Identities=26%  Similarity=0.317  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ   90 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~   90 (281)
                      .+.+..+..+|..+++.|+|++|+..|++++..+| ++.++.++|.++..+|++++|+..++++++++|.++.+++.+|.
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~   81 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence            46789999999999999999999999999999999 69999999999999999999999999999999999999999999


Q ss_pred             HHHHhcChHHHHHHHHHHHhhccC
Q 023501           91 TLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        91 ~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ++..+|++++|+..|.+++...|.
T Consensus        82 ~~~~~g~~~~A~~~~~~~~~~~~~  105 (514)
T 2gw1_A           82 ANEGLGKFADAMFDLSVLSLNGDF  105 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999874

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.55  E-value=2.3e-15  Score=107.63  Aligned_cols=66  Identities=14%  Similarity=0.255  Sum_probs=59.6

Q ss_pred             CCcccccCCcccccCceec-CCCcccccchHHhHhccCCCCCCCCCCCcCCC----CCcccHHHHHHHHHHH
Q 023501          205 PDYLCCKITLDIFRDPVIT-PSGVTYERAVILDHLDKVGKFDPITREPLRES----QLVPNLAIKEAVRAYM  271 (281)
Q Consensus       205 p~~~~c~i~~~~~~~pv~~-~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~----~~~~n~~l~~~i~~~~  271 (281)
                      +..+.||||.+++.+||++ +|||+||+.||..|+..+. .||+|+.++...    .+.+|..+.++++.+.
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~   83 (108)
T 2ckl_A           13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSK-YCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV   83 (108)
T ss_dssp             GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCS-BCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred             CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCC-cCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence            5678999999999999997 9999999999999998765 599999999865    7899999999999884

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.55  E-value=1.1e-13  Score=110.24  Aligned_cols=102  Identities=13%  Similarity=0.136  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch----------
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV----------   82 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~----------   82 (281)
                      .+..+..+|..++..|+|++|+..|.+++..+|.++.++.++|.+|..+|++++|+..+++++++.|.+.          
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  115 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ  115 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence            5679999999999999999999999999999999999999999999999999999999999999888766          


Q ss_pred             ------hHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           83 ------KGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        83 ------~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                            .+++.+|.++..+|++++|+..|++++.+.|+
T Consensus       116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A          116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  153 (213)
T ss_dssp             CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence                  99999999999999999999999999999876

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.55  E-value=1.2e-13  Score=112.61  Aligned_cols=112  Identities=18%  Similarity=0.093  Sum_probs=103.0

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh--hcCc
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQ--LDHD   80 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~p~   80 (281)
                      ++.++...|..+..+..+|..++..|++++|+..|.+++..+|.++.++.++|.++...|++++|+..++++++  .+|.
T Consensus        60 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  139 (252)
T 2ho1_A           60 LRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE  139 (252)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc
Confidence            45666667778899999999999999999999999999999999999999999999999999999999999999  8888


Q ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +..+++.+|.++...|++++|+..+.+++...|.
T Consensus       140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  173 (252)
T 2ho1_A          140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN  173 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence            9999999999999999999999999999999776

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.55  E-value=8e-14  Score=120.22  Aligned_cols=115  Identities=16%  Similarity=0.271  Sum_probs=104.0

Q ss_pred             hhhhhhchHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc
Q 023501            3 LEAGLAGVAK--QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD   80 (281)
Q Consensus         3 l~~~~~~~~~--~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~   80 (281)
                      ++.++...|.  .+..+..+|..+...|++++|+..|.+++...|+++.++.++|.++..+|++++|+..++++++++|.
T Consensus       200 ~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  279 (365)
T 4eqf_A          200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG  279 (365)
T ss_dssp             HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            3445555566  78899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      ++.+++.+|.++..+|++++|+..|++++.+.|+...
T Consensus       280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  316 (365)
T 4eqf_A          280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN  316 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCC
Confidence            9999999999999999999999999999999887433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.55  E-value=1.5e-14  Score=130.23  Aligned_cols=107  Identities=29%  Similarity=0.497  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ   90 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~   90 (281)
                      ++.+..+..+|..+++.|+|++|+..|++|++.+|+++.++.++|.+|..+|++++|+.++++|++++|.++.+++.+|.
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   82 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   82 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           91 TLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        91 ~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      +|..+|++++|+..|+++++++|+...
T Consensus        83 ~~~~~g~~~eA~~~~~~al~~~p~~~~  109 (477)
T 1wao_1           83 SNMALGKFRAALRDYETVVKVKPHDKD  109 (477)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999887444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.54  E-value=4.1e-13  Score=115.50  Aligned_cols=105  Identities=11%  Similarity=0.066  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL   93 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~   93 (281)
                      +..+..+|..++..|+|++|+..|++++..+|.++.++.++|.++...|++++|+..++++++++|.++.+++.+|.++.
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  143 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT  143 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            56688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcChHHHHHHHHHHHhhccCCCCC
Q 023501           94 QRNEYADGIKELEKALNLGRGAKPK  118 (281)
Q Consensus        94 ~~g~~~~A~~~~~kal~~~p~~~~~  118 (281)
                      .+|++++|+..+.+++.+.|.....
T Consensus       144 ~~g~~~~A~~~~~~~~~~~~~~~~~  168 (368)
T 1fch_A          144 NESLQRQACEILRDWLRYTPAYAHL  168 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGG
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHH
Confidence            9999999999999999998875443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.54  E-value=4.2e-13  Score=121.25  Aligned_cols=116  Identities=16%  Similarity=0.169  Sum_probs=89.7

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      ++.+....|+.+..+..+|..++..|++++|+..|.+++..+|+++.++.++|.++..+|++++|+..++++++++|.++
T Consensus       299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  378 (537)
T 3fp2_A          299 FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP  378 (537)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            34455556667777788888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK  118 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~  118 (281)
                      .+++.+|.++...|++++|+..|++++.+.|.....
T Consensus       379 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  414 (537)
T 3fp2_A          379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI  414 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence            888888888888888888888888888777664443

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.54  E-value=2.5e-15  Score=109.17  Aligned_cols=70  Identities=27%  Similarity=0.423  Sum_probs=63.2

Q ss_pred             CCCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHH
Q 023501          201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAY  270 (281)
Q Consensus       201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~  270 (281)
                      ...++..+.||||.+++.+||+++|||+||+.||..|+......||+||.++...++.+|..+.+.|..+
T Consensus        12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l   81 (118)
T 3hct_A           12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (118)
T ss_dssp             SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence            3456788999999999999999999999999999999987654699999999998999999999988876

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=3.2e-15  Score=101.11  Aligned_cols=64  Identities=19%  Similarity=0.251  Sum_probs=54.4

Q ss_pred             CCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHH
Q 023501          202 AEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAV  267 (281)
Q Consensus       202 ~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i  267 (281)
                      ......+.||||.+.+.+||+++|||+||+.||.+|+.... .||+||.++. ..+.+|..|...+
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~-~~~~~~~~l~~~~   73 (81)
T 2csy_A           10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATP-RCYICDQPTG-GIFNPAKELMAKL   73 (81)
T ss_dssp             SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCS-BCSSSCCBCC-SCCEECHHHHHHH
T ss_pred             ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCC-cCCCcCcccc-ccCCcHHHHHHHH
Confidence            44456789999999999999999999999999999998766 5999999997 6788886554443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.53  E-value=1.9e-14  Score=135.00  Aligned_cols=111  Identities=10%  Similarity=0.051  Sum_probs=107.0

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      +++++...|+.+..+..+|..++..|+|++|+..|+++++++|+++.++.++|.++..+|++++ +..|++|++++|+++
T Consensus       456 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~  534 (681)
T 2pzi_A          456 LDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVI  534 (681)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCH
T ss_pred             HHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchH
Confidence            5567777888999999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .+++.+|.++..+|++++|+..|+++++++|+
T Consensus       535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  566 (681)
T 2pzi_A          535 SAAFGLARARSAEGDRVGAVRTLDEVPPTSRH  566 (681)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence            99999999999999999999999999999876

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.52  E-value=1.4e-14  Score=96.02  Aligned_cols=61  Identities=26%  Similarity=0.341  Sum_probs=51.0

Q ss_pred             CCCCCCCcccccCCcccccCceecC-CCcccccchHHhHhccCC-CCCCCCCCCcC-CCCCccc
Q 023501          200 TPAEVPDYLCCKITLDIFRDPVITP-SGVTYERAVILDHLDKVG-KFDPITREPLR-ESQLVPN  260 (281)
Q Consensus       200 ~~~~~p~~~~c~i~~~~~~~pv~~~-~g~~~~~~~i~~~~~~~~-~~cP~~~~~~~-~~~~~~n  260 (281)
                      ....++..+.||||.++|.+||+++ |||+||+.||.+|+.... ..||+||.++. .+.+.+|
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n   71 (74)
T 2yur_A            8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP   71 (74)
T ss_dssp             CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred             ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence            3456678899999999999999999 999999999999998653 36999999854 4456665

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.52  E-value=7e-14  Score=120.31  Aligned_cols=113  Identities=19%  Similarity=0.307  Sum_probs=106.0

Q ss_pred             hhhhhhchHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc
Q 023501            3 LEAGLAGVAK--QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD   80 (281)
Q Consensus         3 l~~~~~~~~~--~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~   80 (281)
                      ++.++...|.  .+..+..+|..++..|++++|+..|.+++..+|+++.++.++|.++..+|++++|+..++++++++|.
T Consensus       204 ~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  283 (368)
T 1fch_A          204 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG  283 (368)
T ss_dssp             HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3445555666  78999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      ++.+++.+|.++..+|++++|+..|++++.+.|+.
T Consensus       284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999998875

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.52  E-value=1.5e-15  Score=103.88  Aligned_cols=66  Identities=23%  Similarity=0.394  Sum_probs=56.8

Q ss_pred             CCCCCCcccccCCcccccCceecCCCcccccchHHhHhccC-----CCCCCCCCCCcCCCCCcccHHHHHH
Q 023501          201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKV-----GKFDPITREPLRESQLVPNLAIKEA  266 (281)
Q Consensus       201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~-----~~~cP~~~~~~~~~~~~~n~~l~~~  266 (281)
                      ...+...+.||||.+.+.+||+++|||+||+.||..|+...     ...||+|+.++...++.+|..|.++
T Consensus        13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~   83 (85)
T 2ecw_A           13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI   83 (85)
T ss_dssp             CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred             HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence            44566789999999999999999999999999999999872     3369999999998899999766544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.51  E-value=1.3e-13  Score=113.72  Aligned_cols=100  Identities=14%  Similarity=0.280  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc----hhHHHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS----VKGHYLLG   89 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----~~a~~~la   89 (281)
                      ++.+...|..++..|+|++|+..|++++..+|+++.++..+|.++..+|++++|+..++++++ .|.+    ..+++.+|
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence            345566666666667777777777777666666666666666666666777777776666666 3333    23366666


Q ss_pred             HHHHHhcChHHHHHHHHHHHhhccC
Q 023501           90 QTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        90 ~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .++..+|++++|+..|+++++++|.
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~  106 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTT  106 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcc
Confidence            6666677777777777766666555

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=2.2e-15  Score=103.02  Aligned_cols=66  Identities=18%  Similarity=0.344  Sum_probs=56.6

Q ss_pred             CCCCCCcccccCCcccccCceecCCCcccccchHHhHhcc-----CCCCCCCCCCCcCCCCCcccHHHHHH
Q 023501          201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK-----VGKFDPITREPLRESQLVPNLAIKEA  266 (281)
Q Consensus       201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~-----~~~~cP~~~~~~~~~~~~~n~~l~~~  266 (281)
                      ...+...+.||||.+.+.+|++++|||+||+.||..|+..     ....||+|+.++...++.+|..|.++
T Consensus        13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~   83 (85)
T 2ecv_A           13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI   83 (85)
T ss_dssp             CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred             HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence            4456678999999999999999999999999999999976     23369999999999899998766543

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=1.6e-14  Score=93.64  Aligned_cols=57  Identities=14%  Similarity=0.167  Sum_probs=49.3

Q ss_pred             CCCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCC
Q 023501          201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQL  257 (281)
Q Consensus       201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~  257 (281)
                      ...++..+.||||.+.+.+||+++|||+||+.||.+|+......||+||.++...++
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A            9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV   65 (66)
T ss_dssp             CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred             hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence            345567899999999999999999999999999999996544469999999987654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.51  E-value=5.6e-14  Score=115.90  Aligned_cols=111  Identities=11%  Similarity=0.081  Sum_probs=97.2

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV----PIYWTNRALCHLKRNDWTKVEADCRKAIQLD   78 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~   78 (281)
                      ++.++...|+.+..+..+|..++..|+|++|+..|.+++. .|.+    +.+|.++|.++..+|++++|+..++++++++
T Consensus        26 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~  104 (272)
T 3u4t_A           26 FNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD  104 (272)
T ss_dssp             HHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence            4556666777788899999999999999999999999998 4444    3458999999999999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           79 HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        79 p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      |.++.++..+|.++..+|++++|+..|++++.++|.
T Consensus       105 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  140 (272)
T 3u4t_A          105 TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT  140 (272)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC
Confidence            999999999999999999999999999999998665

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.51  E-value=5.3e-15  Score=107.03  Aligned_cols=68  Identities=16%  Similarity=0.268  Sum_probs=60.0

Q ss_pred             CCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCC-------CCCcccHHHHHHHHHHH
Q 023501          204 VPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRE-------SQLVPNLAIKEAVRAYM  271 (281)
Q Consensus       204 ~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~-------~~~~~n~~l~~~i~~~~  271 (281)
                      ...++.||||.+++.+||+++|||+||+.||..|+..+...||+||.++..       ..+..|..|...|+.+.
T Consensus        12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~   86 (115)
T 3l11_A           12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY   86 (115)
T ss_dssp             CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred             CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence            345789999999999999999999999999999998755579999999863       57888999999999884

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.51  E-value=2.1e-13  Score=105.84  Aligned_cols=114  Identities=10%  Similarity=0.036  Sum_probs=94.2

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHhhcCcc
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHL-KRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      ++.++...|+.+..+..+|..+...|++++|+..|++++...| ++.++..++.+.. ..+...+|+..++++++++|++
T Consensus        29 ~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~  107 (176)
T 2r5s_A           29 IQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDN  107 (176)
T ss_dssp             HHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCC
Confidence            4566777888888899999999999999999999999988888 7776666664432 3334455788999999999999


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      +.+++.+|.++...|++++|+..|+++++++|++..
T Consensus       108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  143 (176)
T 2r5s_A          108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQD  143 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh
Confidence            999999999999999999999999999999887543

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.51  E-value=7.3e-15  Score=105.81  Aligned_cols=66  Identities=18%  Similarity=0.367  Sum_probs=57.9

Q ss_pred             cccccCCcccccCceecCCCcccccchHHhHhccCC--CCCCCCCCCcCCCCCcccHHHHHHHHHHHH
Q 023501          207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVG--KFDPITREPLRESQLVPNLAIKEAVRAYMD  272 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~--~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~  272 (281)
                      .+.||||.+.+.+||+++|||+||+.||..|+....  ..||+|+.++...++.+|..+..+++.+..
T Consensus        21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~   88 (112)
T 1jm7_A           21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (112)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence            567999999999999999999999999999998543  359999999999999999887777777753

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.51  E-value=6.4e-14  Score=105.97  Aligned_cols=114  Identities=11%  Similarity=-0.011  Sum_probs=99.0

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501           34 IDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGR  113 (281)
Q Consensus        34 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p  113 (281)
                      -..|.+++.++|.++..++++|.+++..|+|++|+..+++++.++|.++.+++.+|.++..+|++++|+..|++++.++|
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501          114 GAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKH  163 (281)
Q Consensus       114 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (281)
                      +....                ....+......++..++...+.++++..+
T Consensus        87 ~~~~~----------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p  120 (148)
T 2vgx_A           87 XEPRF----------------PFHAAECLLQXGELAEAESGLFLAQELIA  120 (148)
T ss_dssp             TCTHH----------------HHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             CCchH----------------HHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            74332                22333444556788888888999888755

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.51  E-value=9.3e-13  Score=116.44  Aligned_cols=144  Identities=19%  Similarity=0.246  Sum_probs=119.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhc
Q 023501           17 LRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRN   96 (281)
Q Consensus        17 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g   96 (281)
                      +..+|..++..|++++|+..|++++...|.++.++.++|.+|...|++++|+..++++++++|.++.+++.+|.++...|
T Consensus       146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  225 (450)
T 2y4t_A          146 LRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLG  225 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            44558889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501           97 EYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus        97 ~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      ++++|+..|++++.+.|+...    .......+.........+......+++.++...+.+++...+.
T Consensus       226 ~~~~A~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~  289 (450)
T 2y4t_A          226 DHELSLSEVRECLKLDQDHKR----CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS  289 (450)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS
T ss_pred             CHHHHHHHHHHHHHhCCChHH----HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            999999999999999876322    1222223334444444555666677788888888888776543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.50  E-value=9.5e-14  Score=107.60  Aligned_cols=129  Identities=16%  Similarity=0.139  Sum_probs=105.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH-HHHhcCh
Q 023501           20 DGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT-LLQRNEY   98 (281)
Q Consensus        20 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~-~~~~g~~   98 (281)
                      .+..++..|+|++|+..|.+++..+|.++.++..+|.+|...|++++|+..++++++++|.++.+++.+|.+ +...|++
T Consensus        16 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~   95 (177)
T 2e2e_A           16 PLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH   95 (177)
T ss_dssp             TTCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred             hhhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCc
Confidence            345567889999999999999999999999999999999999999999999999999999999999999999 8899999


Q ss_pred             --HHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501           99 --ADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus        99 --~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                        ++|+..+.+++.++|...       .+.         ...+......+++.++...+.++++..+.
T Consensus        96 ~~~~A~~~~~~al~~~p~~~-------~~~---------~~la~~~~~~g~~~~A~~~~~~al~~~p~  147 (177)
T 2e2e_A           96 MTAQTRAMIDKALALDSNEI-------TAL---------MLLASDAFMQANYAQAIELWQKVMDLNSP  147 (177)
T ss_dssp             CCHHHHHHHHHHHHHCTTCH-------HHH---------HHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred             chHHHHHHHHHHHHhCCCcH-------HHH---------HHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence              999999999999987632       122         22233344567788888999999886554

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.50  E-value=8e-15  Score=113.01  Aligned_cols=68  Identities=21%  Similarity=0.300  Sum_probs=59.9

Q ss_pred             CCCcccccCCcccccCceec-CCCcccccchHHhHhccCCCCCCCCCCCcC-CCCCcccHHHHHHHHHHH
Q 023501          204 VPDYLCCKITLDIFRDPVIT-PSGVTYERAVILDHLDKVGKFDPITREPLR-ESQLVPNLAIKEAVRAYM  271 (281)
Q Consensus       204 ~p~~~~c~i~~~~~~~pv~~-~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~-~~~~~~n~~l~~~i~~~~  271 (281)
                      +...+.||||.+.+.+||++ +|||+||+.||..|+..+...||+||.++. ...+.+|..|..+|..+.
T Consensus        51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~  120 (165)
T 2ckl_B           51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIY  120 (165)
T ss_dssp             CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC
T ss_pred             CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHH
Confidence            34578999999999999986 999999999999999874556999999995 457999999999999883

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.50  E-value=7.4e-13  Score=119.61  Aligned_cols=142  Identities=12%  Similarity=0.093  Sum_probs=96.2

Q ss_pred             hhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHH
Q 023501            6 GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGH   85 (281)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~   85 (281)
                      ++...|. +..+..+|..++..|++++|+..|.+++..+|+++.++..+|.++...|++++|+..++++++++|.++.++
T Consensus       269 ~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  347 (537)
T 3fp2_A          269 SINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY  347 (537)
T ss_dssp             HHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHH
T ss_pred             HHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            3333444 566677777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501           86 YLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus        86 ~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      +.+|.++..+|++++|+..+.+++...|....       +.         ...+......+++.++...+.++++..+.
T Consensus       348 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~---------~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  410 (537)
T 3fp2_A          348 IQLACLLYKQGKFTESEAFFNETKLKFPTLPE-------VP---------TFFAEILTDRGDFDTAIKQYDIAKRLEEV  410 (537)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH-------HH---------HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-------HH---------HHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence            77777777777777777777777777655322       11         11223334456777777788887776554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.49  E-value=3.5e-13  Score=108.88  Aligned_cols=137  Identities=13%  Similarity=0.075  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH---HHHHHHHHHHH------------------hcCHHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPI---YWTNRALCHLK------------------RNDWTKVEADC   71 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~------------------~~~~~~A~~~~   71 (281)
                      ...++..+|..+++.|+|++|+..|++++...|+++.   +++.+|.++..                  .|++++|+..+
T Consensus        40 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  119 (225)
T 2yhc_A           40 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDF  119 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHH
Confidence            4578999999999999999999999999999999864   78999999986                  57899999999


Q ss_pred             HHHHhhcCcchhHH-----------------HHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHH
Q 023501           72 RKAIQLDHDSVKGH-----------------YLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKY  134 (281)
Q Consensus        72 ~~al~l~p~~~~a~-----------------~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~  134 (281)
                      +++++..|++..+.                 +.+|.+|...|++++|+..|+++++..|++..    ....         
T Consensus       120 ~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~a---------  186 (225)
T 2yhc_A          120 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQA----TRDA---------  186 (225)
T ss_dssp             HHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHH----HHHH---------
T ss_pred             HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCc----cHHH---------
Confidence            99999999987665                 67899999999999999999999999887321    1122         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023501          135 LLWEQESSKRSWELQSLKEACEAALEEK  162 (281)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (281)
                      ....+....+.++.+++...+..+....
T Consensus       187 ~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          187 LPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence            2333444455677777877777766543

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=3.3e-14  Score=93.80  Aligned_cols=59  Identities=17%  Similarity=0.234  Sum_probs=52.1

Q ss_pred             CCCCCCcccccCCcccccCceec-CCCcccccchHHhHhccCCCCCCCCCCCcCCCCCccc
Q 023501          201 PAEVPDYLCCKITLDIFRDPVIT-PSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPN  260 (281)
Q Consensus       201 ~~~~p~~~~c~i~~~~~~~pv~~-~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n  260 (281)
                      ...+...+.||||.+.+.+||++ +|||+||+.||.+|+.... .||+||.++...++.+|
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A            9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSN-RCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCS-SCTTTCCCCCSSCSCCC
T ss_pred             HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCC-cCCCcCcccCccccccc
Confidence            45566789999999999999986 9999999999999998765 59999999998887776

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.49  E-value=1.3e-12  Score=110.21  Aligned_cols=114  Identities=18%  Similarity=0.243  Sum_probs=106.5

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      ++.+....|..+..+..+|..++..|++++|+..|.+++..+|+++.++.++|.++...|++++|+..++++++++|.++
T Consensus       161 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  240 (327)
T 3cv0_A          161 LHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV  240 (327)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            34455566777899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCC
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK  116 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~  116 (281)
                      .+++.+|.++..+|++++|+..+++++.+.|...
T Consensus       241 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  274 (327)
T 3cv0_A          241 RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGT  274 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccc
Confidence            9999999999999999999999999999988743

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.48  E-value=6.7e-13  Score=111.58  Aligned_cols=108  Identities=11%  Similarity=0.021  Sum_probs=96.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHh-cCHHHHHHHHHHHHhhcCcc-
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKR-NDWTKVEADCRKAIQLDHDS-   81 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~al~l~p~~-   81 (281)
                      .+..+..+.++|..+...|+|++|+.+|++|+.+.|..      +.++.++|.+|... |++++|+..+++|+++.|.. 
T Consensus        73 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~  152 (292)
T 1qqe_A           73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ  152 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC
Confidence            34568899999999999999999999999999997653      56899999999995 99999999999999998864 


Q ss_pred             -----hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           82 -----VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        82 -----~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                           ..++..+|.++..+|++++|+..|++++.+.|....
T Consensus       153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence                 567899999999999999999999999999887554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.47  E-value=9.5e-12  Score=104.79  Aligned_cols=107  Identities=13%  Similarity=0.056  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT   91 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~   91 (281)
                      ..+..+..+|..++..|+|++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|.++.+++.+|.+
T Consensus        19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   98 (327)
T 3cv0_A           19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS   98 (327)
T ss_dssp             GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501           92 LLQRNEYADGIKELEKALNLGRGAKPK  118 (281)
Q Consensus        92 ~~~~g~~~~A~~~~~kal~~~p~~~~~  118 (281)
                      +...|++++|+..+.+++...|.....
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~  125 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQPQYEQL  125 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTTTC
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCccHHH
Confidence            999999999999999999998875443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.47  E-value=7.2e-13  Score=100.77  Aligned_cols=110  Identities=13%  Similarity=0.139  Sum_probs=99.5

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      ++.++...|..+..+..+|..++..|+|++|+..|.+++..+|.++.++.++|.++..+|++++|+..++++++++|.+.
T Consensus        36 ~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~  115 (166)
T 1a17_A           36 YSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK  115 (166)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence            44566667788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHH--HHHHHhcChHHHHHHHHHHHhhc
Q 023501           83 KGHYLLG--QTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        83 ~a~~~la--~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                      .++..++  ..+...|++++|+..+.++..+.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A          116 DAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence            8885554  44888999999999999887664

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.47  E-value=7.5e-13  Score=90.48  Aligned_cols=86  Identities=27%  Similarity=0.409  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ   90 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~   90 (281)
                      +..+..+..+|..++..|+|++|+.+|.+++..+|.++.++.++|.++..+|++++|+..++++++++|.++.++..+|.
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhc
Q 023501           91 TLLQRN   96 (281)
Q Consensus        91 ~~~~~g   96 (281)
                      ++..+|
T Consensus        86 ~~~~~g   91 (91)
T 1na3_A           86 AKQKQG   91 (91)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            998765

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.47  E-value=7.2e-13  Score=111.23  Aligned_cols=139  Identities=12%  Similarity=-0.014  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ   90 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~   90 (281)
                      |..+..+..+|..++..|++++|+..|++++..+|+++.++.++|.++...|++++|+..+++++..+|+....+...+.
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            56678889999999999999999999999999999999999999999999999999999999999999988888888888


Q ss_pred             HHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023501           91 TLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVL  165 (281)
Q Consensus        91 ~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (281)
                      .+...++.++|+..|++++.++|++..                .....+......++..++...+.+++..++..
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~----------------~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAA----------------LATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHH----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHH----------------HHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence            888999999999999999999887322                22333334455677788888888888876643

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.46  E-value=1.1e-12  Score=94.19  Aligned_cols=85  Identities=13%  Similarity=0.123  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Q 023501           31 GAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALN  110 (281)
Q Consensus        31 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~  110 (281)
                      ++|+..|.+++..+|+++.++.++|.+|...|++++|+..++++++++|.++.+++.+|.++..+|++++|+..|++++.
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCC
Q 023501          111 LGRGA  115 (281)
Q Consensus       111 ~~p~~  115 (281)
                      +.|..
T Consensus        82 ~~~~~   86 (115)
T 2kat_A           82 AAQSR   86 (115)
T ss_dssp             HHHHH
T ss_pred             hcccc
Confidence            97763

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.46  E-value=7.3e-13  Score=97.36  Aligned_cols=108  Identities=17%  Similarity=0.196  Sum_probs=88.1

Q ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHH
Q 023501           47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIW  126 (281)
Q Consensus        47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~  126 (281)
                      .+.++.++|.++++.|+|++|+..|++|++++|.++.+|+.+|.+|..+|++++|+..+.++++++|+..........+.
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999987655422222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501          127 QELARAKYLLWEQESSKRSWELQSLKEACEAALEEKH  163 (281)
Q Consensus       127 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (281)
                               ...+......+++.++...+.+++...+
T Consensus        87 ---------~~lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           87 ---------SRAGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             ---------HHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             ---------HHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence                     2333444556778888888888887543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.46  E-value=1.1e-12  Score=98.19  Aligned_cols=113  Identities=10%  Similarity=0.038  Sum_probs=95.1

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           35 DAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        35 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ..|.+++..+|++...++.+|.+++..|+|++|+..+++++.++|.++.+++.+|.++..+|++++|+..|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501          115 AKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKH  163 (281)
Q Consensus       115 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (281)
                      +...                ....+......+++.++...++++++..+
T Consensus        85 ~~~~----------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           85 EPRF----------------PFHAAECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             CTHH----------------HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcHH----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4331                22333344556778888888888888765

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.46  E-value=2.9e-12  Score=117.40  Aligned_cols=110  Identities=15%  Similarity=0.118  Sum_probs=73.1

Q ss_pred             hhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501            5 AGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG   84 (281)
Q Consensus         5 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (281)
                      ......|..+..+..+|..+.+.|++++|+..|.+++..+|.+..+|..++.+|.+.|++++|+..++++++++|.+..+
T Consensus       364 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  443 (597)
T 2xpi_A          364 DLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP  443 (597)
T ss_dssp             HHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHH
T ss_pred             HHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence            33344455566666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           85 HYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +..+|.++...|++++|+..|++++.+.|.
T Consensus       444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  473 (597)
T 2xpi_A          444 YLFLGMQHMQLGNILLANEYLQSSYALFQY  473 (597)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            666666666666666666666666666554

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.45  E-value=2.7e-12  Score=108.61  Aligned_cols=113  Identities=15%  Similarity=0.099  Sum_probs=104.2

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhcCHHH
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFS-------KDRY-------GAAIDAYTEAIT-LCPNVPIYWTNRALCHLKRNDWTK   66 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~   66 (281)
                      ++++++...|..+..|...|..+..       .|++       ++|+..|++|+. ++|++..+|.++|.++...|++++
T Consensus        38 ~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~  117 (308)
T 2ond_A           38 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK  117 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence            3566777789999999999999874       5885       999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhhcCcchh-HHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           67 VEADCRKAIQLDHDSVK-GHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        67 A~~~~~~al~l~p~~~~-a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      |...++++++++|.++. +|..+|.++...|++++|...|.++++..|.
T Consensus       118 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~  166 (308)
T 2ond_A          118 VHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART  166 (308)
T ss_dssp             HHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred             HHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence            99999999999999987 9999999999999999999999999999775

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.45  E-value=8.2e-13  Score=113.46  Aligned_cols=100  Identities=18%  Similarity=0.119  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT   91 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~   91 (281)
                      ..+..+.++|..+++.|+|++|+.+|++++.++|+++.+++++|.+|..+|++++|+.++++|++++|.+..++..+|.+
T Consensus       194 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~  273 (336)
T 1p5q_A          194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  273 (336)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            34799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcChHHH-HHHHHHHHhh
Q 023501           92 LLQRNEYADG-IKELEKALNL  111 (281)
Q Consensus        92 ~~~~g~~~~A-~~~~~kal~~  111 (281)
                      +..+|++++| ...|.+++..
T Consensus       274 ~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          274 QQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999 4566666644

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=1.1e-13  Score=91.65  Aligned_cols=57  Identities=19%  Similarity=0.305  Sum_probs=48.8

Q ss_pred             CCCCCCcccccCCcccccCceecCCCcccccchHHhHhcc--CCCCCCCCCCCcCCCCC
Q 023501          201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK--VGKFDPITREPLRESQL  257 (281)
Q Consensus       201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~--~~~~cP~~~~~~~~~~~  257 (281)
                      ...+...+.||||.+.+.+||+++|||+||+.||..|+..  ....||+||.++...++
T Consensus        14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A           14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            3456778999999999999999999999999999999973  33369999999987654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.45  E-value=1e-12  Score=108.22  Aligned_cols=112  Identities=16%  Similarity=0.111  Sum_probs=101.7

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      ++.++...|..+..+..+|..++..|++++|+.+|.+++..+|.++.++.++|.++..+|++++|+..++++++++|.+.
T Consensus        66 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A           66 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            45566667788899999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      ......+.. ...|++++|+..+.+++...|..
T Consensus       146 ~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~  177 (275)
T 1xnf_A          146 FRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKE  177 (275)
T ss_dssp             HHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcc
Confidence            777766654 67799999999999999987763

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.45  E-value=1.2e-12  Score=120.08  Aligned_cols=114  Identities=17%  Similarity=0.026  Sum_probs=108.8

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      +++++...|+.+..+..+|..++..|++++|+.+|+++++.+|+++.++.++|.+|..+|++++|+..++++++++|++.
T Consensus        46 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  125 (568)
T 2vsy_A           46 VQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEP  125 (568)
T ss_dssp             HHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            55677778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHh---cChHHHHHHHHHHHhhccCCC
Q 023501           83 KGHYLLGQTLLQR---NEYADGIKELEKALNLGRGAK  116 (281)
Q Consensus        83 ~a~~~la~~~~~~---g~~~~A~~~~~kal~~~p~~~  116 (281)
                      .+++.+|.++..+   |++++|+..++++++.+|...
T Consensus       126 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  162 (568)
T 2vsy_A          126 YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAV  162 (568)
T ss_dssp             HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCccc
Confidence            9999999999999   999999999999999988743

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.45  E-value=1.7e-12  Score=116.34  Aligned_cols=115  Identities=15%  Similarity=0.196  Sum_probs=96.2

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      ++.++...|..+..+..+|..++..|++++|+..|.+++...|.++.++.++|.++...|++++|+..++++++.+|.++
T Consensus       293 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  372 (514)
T 2gw1_A          293 FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP  372 (514)
T ss_dssp             HHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCS
T ss_pred             HHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCH
Confidence            44555566677778888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      .+++.+|.++...|++++|+..+.+++.+.|....
T Consensus       373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  407 (514)
T 2gw1_A          373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG  407 (514)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch
Confidence            88888888888888888888888888888776543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.45  E-value=3.8e-12  Score=116.60  Aligned_cols=113  Identities=12%  Similarity=0.049  Sum_probs=93.7

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      ++.+....|.....+..++..+.+.|++++|+..|.+++...|.++.++..+|.+|.+.|++++|+..++++++++|.+.
T Consensus       328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  407 (597)
T 2xpi_A          328 TTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG  407 (597)
T ss_dssp             HHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence            34455555666777888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      .+++.+|.++...|++++|+..|++++...|..
T Consensus       408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  440 (597)
T 2xpi_A          408 PAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT  440 (597)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            888888888888888888888888888887653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.44  E-value=2.5e-13  Score=114.05  Aligned_cols=114  Identities=11%  Similarity=-0.055  Sum_probs=106.7

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      .+++++...|+++.++..+|..+...|++++|+..|++++..+|+........+..+...++.++|+..+++++.++|++
T Consensus       139 ~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~  218 (287)
T 3qou_A          139 LLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPED  218 (287)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc
Confidence            35667778899999999999999999999999999999999999888888888888999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      +.+++.+|.++...|++++|+..|.++++.+|+.
T Consensus       219 ~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          219 AALATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999999999998874

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.44  E-value=2.2e-14  Score=103.85  Aligned_cols=67  Identities=25%  Similarity=0.385  Sum_probs=55.8

Q ss_pred             CCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCc-ccHHHHHHHHHH
Q 023501          204 VPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLV-PNLAIKEAVRAY  270 (281)
Q Consensus       204 ~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~-~n~~l~~~i~~~  270 (281)
                      ++..+.||||.+++.+||+++|||+||+.||.+|+...+..||+||.++...++. ++..+...+..+
T Consensus        20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l   87 (116)
T 1rmd_A           20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL   87 (116)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred             ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence            3457899999999999999999999999999999987554699999999987755 466666666544

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.44  E-value=4.4e-14  Score=109.39  Aligned_cols=69  Identities=28%  Similarity=0.433  Sum_probs=62.2

Q ss_pred             CCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHH
Q 023501          202 AEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAY  270 (281)
Q Consensus       202 ~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~  270 (281)
                      ..+++.+.||||.++|.+||+++|||+||+.||.+|+......||+||.+++..++.+|..+.+.|..+
T Consensus        13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l   81 (170)
T 3hcs_A           13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (170)
T ss_dssp             SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence            456788999999999999999999999999999999987654699999999998999999998888765

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.43  E-value=7.2e-14  Score=90.20  Aligned_cols=55  Identities=20%  Similarity=0.233  Sum_probs=48.3

Q ss_pred             CcccccCCcc-cccCc----eecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCccc
Q 023501          206 DYLCCKITLD-IFRDP----VITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPN  260 (281)
Q Consensus       206 ~~~~c~i~~~-~~~~p----v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n  260 (281)
                      +++.||||.+ .+.+|    ++++|||+||+.||.+|+..+...||+||.++...++.++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~   61 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ   61 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence            4678999999 99999    5789999999999999987655569999999998888776

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.43  E-value=2.1e-12  Score=106.34  Aligned_cols=146  Identities=17%  Similarity=0.166  Sum_probs=116.5

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh---
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL---   77 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l---   77 (281)
                      .++..+..+..+|..++..|+|++|+.+|.+++..        .|..+.++.++|.++...|++++|+..+++++.+   
T Consensus        38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  117 (283)
T 3edt_B           38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  117 (283)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            34788999999999999999999999999999988        3667889999999999999999999999999998   


Q ss_pred             -----cCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           78 -----DHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA-KPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSL  151 (281)
Q Consensus        78 -----~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  151 (281)
                           +|....+++.+|.++..+|++++|+..+++++.+.... +........         .....+......++++++
T Consensus       118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---------~~~~la~~~~~~g~~~~A  188 (283)
T 3edt_B          118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK---------TKNNLASCYLKQGKYQDA  188 (283)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH---------HHHHHHHHHHHHTCHHHH
T ss_pred             HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH---------HHHHHHHHHHHcCCHHHH
Confidence                 57889999999999999999999999999999883110 000001111         222233344556777888


Q ss_pred             HHHHHHHHHHhh
Q 023501          152 KEACEAALEEKH  163 (281)
Q Consensus       152 ~~~~~~~l~~~~  163 (281)
                      ...+.++++..+
T Consensus       189 ~~~~~~~l~~~~  200 (283)
T 3edt_B          189 ETLYKEILTRAH  200 (283)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888877543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.42  E-value=3.7e-12  Score=107.16  Aligned_cols=102  Identities=9%  Similarity=-0.017  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRA--LCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ   90 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a--~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~   90 (281)
                      ....+..+|..+.+.|++++|+..|++++..+|++.......+  ..+...|++++|+..++++++..|.++.+++.+|.
T Consensus       129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~  208 (291)
T 3mkr_A          129 SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAA  208 (291)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            3444555555555555555555555555555554432222211  11122244555555555555555555555555555


Q ss_pred             HHHHhcChHHHHHHHHHHHhhccC
Q 023501           91 TLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        91 ~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ++..+|++++|+..|++++.++|+
T Consensus       209 ~~~~~g~~~eA~~~l~~al~~~p~  232 (291)
T 3mkr_A          209 CHMAQGRWEAAEGVLQEALDKDSG  232 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC
Confidence            555555555555555555555444

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.42  E-value=6.7e-12  Score=94.36  Aligned_cols=143  Identities=15%  Similarity=0.151  Sum_probs=113.0

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc-
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS-   81 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-   81 (281)
                      .+...+..+..+|..++..|+|++|+.+|.+++...+..      ..++.++|.++...|++++|+..+++++.+.+.. 
T Consensus         4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   83 (164)
T 3ro3_A            4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK   83 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            356678899999999999999999999999999986543      2589999999999999999999999999987653 


Q ss_pred             -----hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           82 -----VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACE  156 (281)
Q Consensus        82 -----~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (281)
                           ..+++.+|.++..+|++++|+..+++++.+.+.....          ..........+......++..++...+.
T Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~  153 (164)
T 3ro3_A           84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR----------IGEGRACWSLGNAYTALGNHDQAMHFAE  153 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch----------HhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence                 6789999999999999999999999999886543221          1111222333444455667777777777


Q ss_pred             HHHHH
Q 023501          157 AALEE  161 (281)
Q Consensus       157 ~~l~~  161 (281)
                      ++++.
T Consensus       154 ~a~~~  158 (164)
T 3ro3_A          154 KHLEI  158 (164)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.42  E-value=2.9e-13  Score=105.04  Aligned_cols=137  Identities=12%  Similarity=-0.029  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ   90 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~   90 (281)
                      +...+.+..+|..++..|++++|+..|++++..+|+++.++.++|.++...|++++|+..+++++.++| ++..+..++.
T Consensus         3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~   81 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK   81 (176)
T ss_dssp             ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence            344566889999999999999999999999999999999999999999999999999999999999999 8877776665


Q ss_pred             HHH-HhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501           91 TLL-QRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus        91 ~~~-~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      +.. ..+...+|+..++++++++|+...                .....+......+++.++...+.++++..|.
T Consensus        82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~----------------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  140 (176)
T 2r5s_A           82 LELHQQAAESPELKRLEQELAANPDNFE----------------LACELAVQYNQVGRDEEALELLWNILKVNLG  140 (176)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHSTTCHH----------------HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHhhcccchHHHHHHHHHHhCCCCHH----------------HHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence            533 334555689999999999887322                2223333445567888888888888887654

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.42  E-value=2.8e-14  Score=106.50  Aligned_cols=68  Identities=15%  Similarity=0.170  Sum_probs=57.6

Q ss_pred             CCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcC---------CCCCcccHHHHHHHHHH
Q 023501          203 EVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLR---------ESQLVPNLAIKEAVRAY  270 (281)
Q Consensus       203 ~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~---------~~~~~~n~~l~~~i~~~  270 (281)
                      .++..+.||||..+|.+||+++|||+||+.||.+|+..+...||+||.++.         ...+.++..+.+.|..+
T Consensus        27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L  103 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL  103 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred             cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence            456789999999999999999999999999999999866546999998753         33577998888887754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.41  E-value=2.2e-12  Score=108.37  Aligned_cols=105  Identities=13%  Similarity=0.025  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh--
Q 023501           13 QAEQLRLDGNYYFSK-DRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK--   83 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~--   83 (281)
                      .+..+..+|..+... |++++|+.+|++|+.+.|.+      +.++.++|.++..+|+|++|+..+++++++.|.+..  
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  195 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ  195 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence            477899999999996 99999999999999998754      578999999999999999999999999999987653  


Q ss_pred             -----HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           84 -----GHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        84 -----a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                           +++.+|.++..+|++++|+..|++++.++|....
T Consensus       196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence                 6789999999999999999999999999887443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.41  E-value=9.8e-13  Score=91.75  Aligned_cols=92  Identities=16%  Similarity=0.051  Sum_probs=84.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhc
Q 023501           18 RLDGNYYFSKDRYGAAIDAYTEAITLCPNVPI-YWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRN   96 (281)
Q Consensus        18 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g   96 (281)
                      ..+|..++..|+|++|+..|++++..+|+++. ++.++|.+|..+|++++|+..++++++++|++..++..        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            56899999999999999999999999999999 99999999999999999999999999999999988754        6


Q ss_pred             ChHHHHHHHHHHHhhccCCCC
Q 023501           97 EYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        97 ~~~~A~~~~~kal~~~p~~~~  117 (281)
                      .+.+++..|.+++..+|++..
T Consensus        76 ~~~~a~~~~~~~~~~~p~~~~   96 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEHHH   96 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCCSS
T ss_pred             HHHHHHHHHHHHhccCccccc
Confidence            688899999999988887543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.41  E-value=5.7e-12  Score=103.70  Aligned_cols=104  Identities=21%  Similarity=0.241  Sum_probs=98.1

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh----
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL----   77 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l----   77 (281)
                      ++..+..+..+|..++..|++++|+.+|.+++..        .|....++.++|.++..+|++++|+..+++++++    
T Consensus        81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  160 (283)
T 3edt_B           81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR  160 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            5788999999999999999999999999999998        4777899999999999999999999999999999    


Q ss_pred             ----cCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501           78 ----DHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGR  113 (281)
Q Consensus        78 ----~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p  113 (281)
                          +|....++..+|.++..+|++++|+..+++++.+.+
T Consensus       161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  200 (283)
T 3edt_B          161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH  200 (283)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence                788899999999999999999999999999998854

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.40  E-value=2.8e-12  Score=92.55  Aligned_cols=86  Identities=15%  Similarity=0.039  Sum_probs=79.4

Q ss_pred             hhhhhhc---hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 023501            3 LEAGLAG---VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH   79 (281)
Q Consensus         3 l~~~~~~---~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p   79 (281)
                      +++++..   +|+.+..+..+|..++..|+|++|+..|+++++.+|+++.++.++|.++..+|++++|+..+++++.++|
T Consensus        13 ~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p   92 (117)
T 3k9i_A           13 YEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETS   92 (117)
T ss_dssp             HHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4566666   6999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHH
Q 023501           80 DSVKGHYLL   88 (281)
Q Consensus        80 ~~~~a~~~l   88 (281)
                      .++......
T Consensus        93 ~~~~~~~~~  101 (117)
T 3k9i_A           93 DDETIQSYK  101 (117)
T ss_dssp             CCHHHHHTH
T ss_pred             CcHHHHHHH
Confidence            998765433

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.40  E-value=4.6e-12  Score=107.17  Aligned_cols=144  Identities=10%  Similarity=-0.014  Sum_probs=119.0

Q ss_pred             hhhhhhh-chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 023501            2 VLEAGLA-GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPI-YWTNRALCHLKRNDWTKVEADCRKAIQLDH   79 (281)
Q Consensus         2 ~l~~~~~-~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~l~p   79 (281)
                      ++++++. ..|+.+..+..+|..+...|++++|+..|++++...|.++. +|.++|.++...|++++|...+++|++++|
T Consensus        86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p  165 (308)
T 2ond_A           86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR  165 (308)
T ss_dssp             HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence            3566777 58899999999999999999999999999999999999987 999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHH-hcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           80 DSVKGHYLLGQTLLQ-RNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAA  158 (281)
Q Consensus        80 ~~~~a~~~la~~~~~-~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (281)
                      .+..++...+..... .|++++|...|++++++.|+..       .++..         .+....+.++.+++...++++
T Consensus       166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~---------~~~~~~~~g~~~~A~~~~~~a  229 (308)
T 2ond_A          166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP-------EYVLA---------YIDYLSHLNEDNNTRVLFERV  229 (308)
T ss_dssp             CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH-------HHHHH---------HHHHHHTTCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------HHHHH---------HHHHHHHCCCHHHHHHHHHHH
Confidence            998888766666443 7999999999999999988621       22221         122233446777788888888


Q ss_pred             HHH
Q 023501          159 LEE  161 (281)
Q Consensus       159 l~~  161 (281)
                      +..
T Consensus       230 l~~  232 (308)
T 2ond_A          230 LTS  232 (308)
T ss_dssp             HHS
T ss_pred             Hhc
Confidence            874

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.39  E-value=5.3e-11  Score=103.89  Aligned_cols=104  Identities=17%  Similarity=0.195  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHhcCHHHHHHHHHHHHhh------cCc
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP----IYWTNRALCHLKRNDWTKVEADCRKAIQL------DHD   80 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~   80 (281)
                      +..+..+..+|..++..|+|++|+.+|++++...|+++    .++..+|.+|..+|++++|+..+++++++      +|.
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            57788889999999999999999999999999999986    68999999999999999999999999998      688


Q ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ...+++.+|.++..+|++++|+..+.+++.+.+.
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  158 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQ  158 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999998544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.39  E-value=4.5e-13  Score=120.48  Aligned_cols=114  Identities=12%  Similarity=0.156  Sum_probs=101.8

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      +++++...|+.+..+..+|..++..|+|++|+..|++|++++|+++.++.++|.+|..+|++++|+..+++|++++|++.
T Consensus        29 ~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~  108 (477)
T 1wao_1           29 YSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK  108 (477)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            45677778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHH--HHHhcChHHHHHHHH-----------HHHhhccCCC
Q 023501           83 KGHYLLGQT--LLQRNEYADGIKELE-----------KALNLGRGAK  116 (281)
Q Consensus        83 ~a~~~la~~--~~~~g~~~~A~~~~~-----------kal~~~p~~~  116 (281)
                      .++..++.+  +...|++++|+..++           +++.+.|...
T Consensus       109 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~  155 (477)
T 1wao_1          109 DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS  155 (477)
T ss_dssp             THHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence            999999999  889999999999999           8888877643

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.38  E-value=3.7e-12  Score=92.43  Aligned_cols=96  Identities=19%  Similarity=0.132  Sum_probs=89.9

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      ++.++...|..+..+..+|..++..|++++|+..|.+++...|+++.++..+|.++..+|++++|+..++++++++|.+.
T Consensus        35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  114 (131)
T 2vyi_A           35 YGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE  114 (131)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccch
Confidence            44555666778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCh
Q 023501           83 KGHYLLGQTLLQRNEY   98 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~   98 (281)
                      .+++.+|.++..+|++
T Consensus       115 ~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A          115 TYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999999999876

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.38  E-value=3.5e-12  Score=93.00  Aligned_cols=92  Identities=13%  Similarity=0.065  Sum_probs=85.6

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc----
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD----   78 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~----   78 (281)
                      ++.++...|+.+..+..+|..++..|+|++|+..|++++.++|+++.++.++|.++..+|++++|+..++++++++    
T Consensus        27 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  106 (126)
T 3upv_A           27 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN  106 (126)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC
Confidence            4567777888999999999999999999999999999999999999999999999999999999999999999999    


Q ss_pred             --CcchhHHHHHHHHHHH
Q 023501           79 --HDSVKGHYLLGQTLLQ   94 (281)
Q Consensus        79 --p~~~~a~~~la~~~~~   94 (281)
                        |.+..++..++.+...
T Consensus       107 ~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A          107 NGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             TTTTHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHh
Confidence              8888888888877654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.38  E-value=3.8e-12  Score=92.92  Aligned_cols=95  Identities=18%  Similarity=0.181  Sum_probs=89.5

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      ++.++...|..+..+..+|..++..|++++|+.+|.+++..+|.++.++.++|.++..+|++++|+..++++++++|.+.
T Consensus        39 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~  118 (133)
T 2lni_A           39 YTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK  118 (133)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch
Confidence            45666777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcC
Q 023501           83 KGHYLLGQTLLQRNE   97 (281)
Q Consensus        83 ~a~~~la~~~~~~g~   97 (281)
                      .+++.+|.++..+|+
T Consensus       119 ~~~~~l~~~~~~~~~  133 (133)
T 2lni_A          119 EAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999998774

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.38  E-value=1.8e-11  Score=102.88  Aligned_cols=134  Identities=10%  Similarity=0.052  Sum_probs=105.7

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG   89 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la   89 (281)
                      .|+++..+..+|..+...|++++|+..|.+     |.+..++..+|.++.++|++++|+..++++++++|++.......|
T Consensus        97 ~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a  171 (291)
T 3mkr_A           97 DVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATA  171 (291)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHH
Confidence            477889999999999999999999999987     899999999999999999999999999999999998765444333


Q ss_pred             --HHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501           90 --QTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus        90 --~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                        ..+...|++++|+..|+++++..|....       +         ....+....+.+++.++...++++++..|.
T Consensus       172 ~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~-------~---------~~~la~~~~~~g~~~eA~~~l~~al~~~p~  232 (291)
T 3mkr_A          172 WVSLAAGGEKLQDAYYIFQEMADKCSPTLL-------L---------LNGQAACHMAQGRWEAAEGVLQEALDKDSG  232 (291)
T ss_dssp             HHHHHHCTTHHHHHHHHHHHHHHHSCCCHH-------H---------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHhCCCcHH-------H---------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence              3334458999999999999999776211       1         122233344557777777778887777664

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.37  E-value=1.5e-11  Score=96.65  Aligned_cols=143  Identities=15%  Similarity=0.103  Sum_probs=113.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh------
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL------   77 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------   77 (281)
                      +...+..+..+|..++..|+|++|+.+|.+++..      .|..+.++.++|.++..+|++++|+..+++++.+      
T Consensus        22 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  101 (203)
T 3gw4_A           22 PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE  101 (203)
T ss_dssp             TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc
Confidence            3467889999999999999999999999999994      4556789999999999999999999999999998      


Q ss_pred             cC-cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           78 DH-DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACE  156 (281)
Q Consensus        78 ~p-~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (281)
                      +| ....+++.+|.++..+|++++|+..+.+++.+.+..+..   .       ..+......+......+++.++...+.
T Consensus       102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~-------~~~~~~~~la~~~~~~g~~~~A~~~~~  171 (203)
T 3gw4_A          102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ---V-------AIACAFRGLGDLAQQEKNLLEAQQHWL  171 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---H-------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccch---H-------HHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            33 346789999999999999999999999999886543331   1       111122333444455677788888888


Q ss_pred             HHHHHh
Q 023501          157 AALEEK  162 (281)
Q Consensus       157 ~~l~~~  162 (281)
                      +++...
T Consensus       172 ~al~~~  177 (203)
T 3gw4_A          172 RARDIF  177 (203)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887753

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.37  E-value=3.5e-12  Score=97.56  Aligned_cols=93  Identities=13%  Similarity=0.149  Sum_probs=85.7

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      .++.++...|..+..+..+|..++..|+|++|+..|.+++.++|+++.+|+++|.+|..+|++++|+..++++++++|++
T Consensus        33 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  112 (164)
T 3sz7_A           33 LYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG  112 (164)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence            35567777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHH
Q 023501           82 VKGHYLLGQTLLQ   94 (281)
Q Consensus        82 ~~a~~~la~~~~~   94 (281)
                      ..+++.++.....
T Consensus       113 ~~~~~~~~l~~~~  125 (164)
T 3sz7_A          113 GSDAMKRGLETTK  125 (164)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            9988887766543

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.36  E-value=2.4e-13  Score=89.37  Aligned_cols=56  Identities=20%  Similarity=0.336  Sum_probs=50.2

Q ss_pred             CCCcccccCCcccccCc-------eecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCccc
Q 023501          204 VPDYLCCKITLDIFRDP-------VITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPN  260 (281)
Q Consensus       204 ~p~~~~c~i~~~~~~~p-------v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n  260 (281)
                      ....+.|+||.+.+.+|       ++++|||+||+.||.+|+.... .||+||.++...++.++
T Consensus         7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~~   69 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYHPI   69 (71)
T ss_dssp             CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCCBCCCCSCCCC
T ss_pred             CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCC-CCCCCCCccChhheeec
Confidence            45678999999999998       8899999999999999998776 59999999998888775

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=7.2e-13  Score=84.88  Aligned_cols=48  Identities=21%  Similarity=0.263  Sum_probs=41.6

Q ss_pred             CCCCCCcccccCCcccccCceecCCCcccccchHHhHhcc--CCCCCCCC
Q 023501          201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK--VGKFDPIT  248 (281)
Q Consensus       201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~--~~~~cP~~  248 (281)
                      ...+...+.||||.+.+.+||+++|||+||+.||.+|+..  ....||+|
T Consensus        14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            3456678999999999999999999999999999999984  33369987

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.36  E-value=5.7e-12  Score=96.17  Aligned_cols=89  Identities=11%  Similarity=-0.002  Sum_probs=81.1

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch-hHHHHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV-KGHYLL   88 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~~l   88 (281)
                      .+..+..+..+|..+++.|+|++|+..|++++.++|+++.+|+.+|.+|..+|++++|+.+++++++++|++. .....+
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l  138 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM  138 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            6778899999999999999999999999999999999999999999999999999999999999999999998 667777


Q ss_pred             HHHHHHhcCh
Q 023501           89 GQTLLQRNEY   98 (281)
Q Consensus        89 a~~~~~~g~~   98 (281)
                      +.+...++++
T Consensus       139 ~~~~~~~~~~  148 (162)
T 3rkv_A          139 KIVTERRAEK  148 (162)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7766655543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.35  E-value=6.5e-12  Score=88.15  Aligned_cols=72  Identities=22%  Similarity=0.262  Sum_probs=58.5

Q ss_pred             hCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           43 LCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        43 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .+|+++.+++++|.+|+.+|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|++++++.|.
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            367888888888888888888888888888888888888888888888888888888888888888888665

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=2.3e-13  Score=89.39  Aligned_cols=52  Identities=15%  Similarity=0.082  Sum_probs=46.0

Q ss_pred             CCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501          203 EVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRES  255 (281)
Q Consensus       203 ~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~  255 (281)
                      .....+.|+||.+.+.+||+++|||+||..||..|+..+. .||+||.++...
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~   62 (71)
T 2d8t_A           11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK-RCALCRQEIPED   62 (71)
T ss_dssp             SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSS-BCSSSCCBCCHH
T ss_pred             cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCC-cCcCcCchhCHh
Confidence            3456789999999999999999999999999999998775 599999998754

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.34  E-value=2.2e-11  Score=108.34  Aligned_cols=108  Identities=19%  Similarity=0.078  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC-
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL---------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH-   79 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p-   79 (281)
                      .+..+..+..+|.+++..|+|++|+.+|++|+++         +|.....|.|+|.+|..+|++++|+.++++++++.+ 
T Consensus        47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~  126 (472)
T 4g1t_A           47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK  126 (472)
T ss_dssp             ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence            3455778889999999999999999999999987         567788999999999999999999999999998753 


Q ss_pred             -------cchhHHHHHHHHHHHhc--ChHHHHHHHHHHHhhccCCCC
Q 023501           80 -------DSVKGHYLLGQTLLQRN--EYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        80 -------~~~~a~~~la~~~~~~g--~~~~A~~~~~kal~~~p~~~~  117 (281)
                             ..+..+..+|.++...|  +|++|+..|++++.++|++..
T Consensus       127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~  173 (472)
T 4g1t_A          127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE  173 (472)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred             cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence                   45678888998887765  699999999999999887443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.34  E-value=2e-10  Score=96.51  Aligned_cols=106  Identities=15%  Similarity=0.213  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh------cCcc
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV----PIYWTNRALCHLKRNDWTKVEADCRKAIQL------DHDS   81 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~~   81 (281)
                      .....+...|..++..|+|++|+.+|++++...|.+    +.++..+|.++...|++++|+..+++++.+      .|..
T Consensus         3 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (338)
T 3ro2_A            3 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   82 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence            456678899999999999999999999999999998    578999999999999999999999999988      5667


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      ..++..+|.++..+|++++|+..+.+++.+.+...+
T Consensus        83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  118 (338)
T 3ro2_A           83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND  118 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Confidence            889999999999999999999999999999776433

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.34  E-value=2e-11  Score=106.17  Aligned_cols=105  Identities=14%  Similarity=0.144  Sum_probs=87.0

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc-
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN-------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS-   81 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-   81 (281)
                      ++..+..+..+|..++..|++++|+.+|.+|+.+.+.       .+.++.++|.+|..+|++++|+..+++|+++.+.. 
T Consensus       139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  218 (383)
T 3ulq_A          139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK  218 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC
Confidence            5667888899999999999999999999999887443       35688889999999999999999999998886543 


Q ss_pred             -----hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           82 -----VKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        82 -----~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                           ..+++.+|.++..+|++++|+..+++++.+.+.
T Consensus       219 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  256 (383)
T 3ulq_A          219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE  256 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence                 358888999999999999999999999886543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.33  E-value=3.6e-11  Score=100.49  Aligned_cols=145  Identities=17%  Similarity=0.097  Sum_probs=115.4

Q ss_pred             hhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-
Q 023501            7 LAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL-   77 (281)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-   77 (281)
                      ....|..+..+..+|..++..|+|++|+.+|.+++.+        .|..+.++..+|.++...|++++|+..+++++.+ 
T Consensus        20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   99 (311)
T 3nf1_A           20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR   99 (311)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            3456788999999999999999999999999999995        6778899999999999999999999999999988 


Q ss_pred             -------cCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           78 -------DHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA--KPKGYIVEDIWQELARAKYLLWEQESSKRSWEL  148 (281)
Q Consensus        78 -------~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  148 (281)
                             +|....+++.+|.++..+|++++|+..+.+++.+....  ... .....         .....+......+++
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~---------~~~~la~~~~~~~~~  169 (311)
T 3nf1_A          100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH-PDVAK---------QLNNLALLCQNQGKY  169 (311)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC-HHHHH---------HHHHHHHHHHTTTCH
T ss_pred             HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC-hHHHH---------HHHHHHHHHHHcCCH
Confidence                   47778999999999999999999999999999884110  000 00111         122223334455667


Q ss_pred             HHHHHHHHHHHHH
Q 023501          149 QSLKEACEAALEE  161 (281)
Q Consensus       149 ~~~~~~~~~~l~~  161 (281)
                      .++...+.+++..
T Consensus       170 ~~A~~~~~~a~~~  182 (311)
T 3nf1_A          170 EEVEYYYQRALEI  182 (311)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777777765

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.33  E-value=7e-12  Score=98.96  Aligned_cols=98  Identities=10%  Similarity=-0.001  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL   93 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~   93 (281)
                      +..+..+|..++..|+|++|+.+|.+++..+|+++.+++++|.+|..+|++++|+..++++++++|.+..++..++.++.
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  167 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  167 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcChHHHH-HHHHHHHhh
Q 023501           94 QRNEYADGI-KELEKALNL  111 (281)
Q Consensus        94 ~~g~~~~A~-~~~~kal~~  111 (281)
                      .+++..++. ..+.+.+..
T Consensus       168 ~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          168 KLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             HHHHHHC------------
T ss_pred             HHHHHHHHHHHHHHHHhcc
Confidence            999988887 555555443

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=1.5e-12  Score=89.29  Aligned_cols=63  Identities=25%  Similarity=0.352  Sum_probs=51.6

Q ss_pred             CCCCCCCcccccCCcccccC----ceecCCCcccccchHHhHhccC--CCCCCCCCCCcCCC---CCcccHH
Q 023501          200 TPAEVPDYLCCKITLDIFRD----PVITPSGVTYERAVILDHLDKV--GKFDPITREPLRES---QLVPNLA  262 (281)
Q Consensus       200 ~~~~~p~~~~c~i~~~~~~~----pv~~~~g~~~~~~~i~~~~~~~--~~~cP~~~~~~~~~---~~~~n~~  262 (281)
                      ....+...+.||||.+.+.+    |++++|||+||+.||.+|+...  ...||+||.++...   .+..|+.
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~n~~   79 (88)
T 2ct2_A            8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTDNLT   79 (88)
T ss_dssp             SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEECTT
T ss_pred             ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHHHHH
Confidence            34556678999999999999    9999999999999999999875  33699999998754   4555543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.33  E-value=3.7e-12  Score=96.21  Aligned_cols=81  Identities=14%  Similarity=0.097  Sum_probs=74.4

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc----------
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRY----------GAAIDAYTEAITLCPNVPIYWTNRALCHLKRN----------   62 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~----------   62 (281)
                      ++.++...|+.++.+..+|.++...+++          ++|+..|++||+++|+++.+|+++|.+|..+|          
T Consensus        25 ~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~  104 (158)
T 1zu2_A           25 AENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAK  104 (158)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhh
Confidence            4567778899999999999999998876          59999999999999999999999999999885          


Q ss_pred             -CHHHHHHHHHHHHhhcCcchh
Q 023501           63 -DWTKVEADCRKAIQLDHDSVK   83 (281)
Q Consensus        63 -~~~~A~~~~~~al~l~p~~~~   83 (281)
                       ++++|+..|++|++++|++..
T Consensus       105 g~~~eA~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A          105 HNFDLATQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHH
Confidence             899999999999999999753

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.32  E-value=9.1e-12  Score=111.39  Aligned_cols=97  Identities=11%  Similarity=0.138  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL   92 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~   92 (281)
                      .+..+.++|..+++.|+|++|+.+|++++.++|+++.+|+++|.+|..+|+|++|+.++++|++++|++..++..++.++
T Consensus       316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~  395 (457)
T 1kt0_A          316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ  395 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcChHHHHHH-HHHHH
Q 023501           93 LQRNEYADGIKE-LEKAL  109 (281)
Q Consensus        93 ~~~g~~~~A~~~-~~kal  109 (281)
                      ..++++++|... +.+.+
T Consensus       396 ~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          396 KKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999988744 44333

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.32  E-value=2.5e-10  Score=98.96  Aligned_cols=104  Identities=15%  Similarity=0.217  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh------cCcc
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV----PIYWTNRALCHLKRNDWTKVEADCRKAIQL------DHDS   81 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~~   81 (281)
                      ..+..+...|..++..|+|++|+.+|++++...|.+    +.++..+|.++...|++++|+..+++++.+      .|..
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            456788999999999999999999999999999998    468999999999999999999999999988      4667


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      ..+++.+|.++..+|++++|+..+.+++.+.|..
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  120 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL  120 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence            8899999999999999999999999999997753

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.32  E-value=6e-11  Score=99.09  Aligned_cols=145  Identities=17%  Similarity=0.188  Sum_probs=113.6

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD--   78 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--   78 (281)
                      ..+..+..+..+|..++..|++++|+.+|.+++..        .|..+.++.++|.++..+|++++|+..+++++++.  
T Consensus        64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  143 (311)
T 3nf1_A           64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  143 (311)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            46788899999999999999999999999999988        35678899999999999999999999999999884  


Q ss_pred             ------CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           79 ------HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK-PKGYIVEDIWQELARAKYLLWEQESSKRSWELQSL  151 (281)
Q Consensus        79 ------p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  151 (281)
                            |....++..+|.++...|++++|+..+++++.+..... ........+         ....+......++++++
T Consensus       144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A  214 (311)
T 3nf1_A          144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT---------KNNLASCYLKQGKFKQA  214 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHH---------HHHHHHHHHHHTCHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH---------HHHHHHHHHHcCCHHHH
Confidence                  67788999999999999999999999999998832210 000011111         22223334455667777


Q ss_pred             HHHHHHHHHHh
Q 023501          152 KEACEAALEEK  162 (281)
Q Consensus       152 ~~~~~~~l~~~  162 (281)
                      ...+.+++...
T Consensus       215 ~~~~~~al~~~  225 (311)
T 3nf1_A          215 ETLYKEILTRA  225 (311)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777777643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.31  E-value=6.8e-11  Score=105.19  Aligned_cols=112  Identities=17%  Similarity=0.204  Sum_probs=92.5

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-------------------cC
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKR-------------------ND   63 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-------------------~~   63 (281)
                      ++++....|..+..+..+|..+...|++++|+..|.++++.+|+++.++.++|.+|...                   +.
T Consensus       236 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~  315 (472)
T 4g1t_A          236 VEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLEL  315 (472)
T ss_dssp             HHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHH
T ss_pred             HHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Confidence            44555666777888888888888888888888888888888888888888888887543                   34


Q ss_pred             HHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           64 WTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        64 ~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ++.|+..++++++++|.+..+++.+|.++..+|++++|+..|++++.+.|.
T Consensus       316 ~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~  366 (472)
T 4g1t_A          316 IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT  366 (472)
T ss_dssp             HHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            677888888888888888888888899999999999999999998888654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.30  E-value=6.4e-11  Score=103.39  Aligned_cols=143  Identities=15%  Similarity=0.165  Sum_probs=116.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc--
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP------IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS--   81 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--   81 (281)
                      .+..+..+..+|..++..|+|++|+.+|.+++.+.+...      .++.++|.+|..+|++++|+..+++++.+.|..  
T Consensus       219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  298 (411)
T 4a1s_A          219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE  298 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence            456677899999999999999999999999999877643      389999999999999999999999999998754  


Q ss_pred             ----hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           82 ----VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEA  157 (281)
Q Consensus        82 ----~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (281)
                          ..++..+|.++..+|++++|+..+++++.+.+.....          ..........+......++..++...+.+
T Consensus       299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~  368 (411)
T 4a1s_A          299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR----------IGEARACWSLGNAHSAIGGHERALKYAEQ  368 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh----------HHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence                7899999999999999999999999999996543221          11222333344455566788888888888


Q ss_pred             HHHHh
Q 023501          158 ALEEK  162 (281)
Q Consensus       158 ~l~~~  162 (281)
                      +++..
T Consensus       369 al~~~  373 (411)
T 4a1s_A          369 HLQLA  373 (411)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            88753

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.30  E-value=2.1e-11  Score=85.44  Aligned_cols=87  Identities=9%  Similarity=0.007  Sum_probs=74.0

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch--hHHHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV--KGHYL   87 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~--~a~~~   87 (281)
                      +|+.+..+..+|..++..|+|++|+..|+++++.+|+++.+|.++|.+|..+|++++|+..+++++++.|.+.  .+...
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            5778899999999999999999999999999999999999999999999999999999999999999987543  33344


Q ss_pred             HHHHHHHhc
Q 023501           88 LGQTLLQRN   96 (281)
Q Consensus        88 la~~~~~~g   96 (281)
                      +..++...+
T Consensus        83 l~~~l~~~~   91 (100)
T 3ma5_A           83 LQDAKLKAE   91 (100)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHcc
Confidence            444444433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.29  E-value=3.3e-12  Score=109.78  Aligned_cols=103  Identities=14%  Similarity=0.030  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH-H
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL-L   93 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~-~   93 (281)
                      ..+.++|..+++.|+|++|+.+|++++.++|+++.+|+++|.+|..+|+|++|+.+++++++++|.+..++..++.+. .
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999999984 4


Q ss_pred             HhcChHHHHHHHHHHHhhccCCCC
Q 023501           94 QRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        94 ~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      ..+..+++...|.+++...|.+..
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCCC
Confidence            556788889999999999887443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.29  E-value=2.8e-10  Score=95.43  Aligned_cols=139  Identities=12%  Similarity=0.049  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHh---hcCcc--
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQ---LDHDS--   81 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~---l~p~~--   81 (281)
                      ....+..+|..+...|+|++|+.+|.+++...+..      +.++.++|.+|..+|+|++|+..+++|++   ..|.+  
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~  193 (293)
T 2qfc_A          114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE  193 (293)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcccc
Confidence            34456678888899999999999999999875543      56899999999999999999999999994   44543  


Q ss_pred             --hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 023501           82 --VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSL-KEACEAA  158 (281)
Q Consensus        82 --~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  158 (281)
                        ..+++.+|.+|..+|++++|+..+++++.+.+.... ......+...++.         .....++++++ ...+.++
T Consensus       194 ~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~-~~~~~~~~~~lg~---------~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-MALIGQLYYQRGE---------CLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-CSSHHHHHHHHHH---------HHHHTTCCHHHHHHHHHHH
T ss_pred             chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHH---------HHHHcCCcHHHHHHHHHHH
Confidence              268999999999999999999999999998654222 2223333333333         33344555556 5556666


Q ss_pred             HHH
Q 023501          159 LEE  161 (281)
Q Consensus       159 l~~  161 (281)
                      +..
T Consensus       264 l~~  266 (293)
T 2qfc_A          264 SFF  266 (293)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.29  E-value=9e-11  Score=101.99  Aligned_cols=135  Identities=14%  Similarity=0.145  Sum_probs=108.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHh---CCC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC-------cchh
Q 023501           17 LRLDGNYYFSKDRYGAAIDAYTEAITL---CPN---VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH-------DSVK   83 (281)
Q Consensus        17 ~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p-------~~~~   83 (281)
                      ++.+|..++..|+|++|+.+|.+|+.+   .++   .+.++.++|.+|..+|++++|+..+++|+++.+       ....
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  185 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence            445999999999999999999999987   233   568999999999999999999999999999854       3456


Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           84 GHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEE  161 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (281)
                      ++..+|.++..+|++++|+..|.+++.+.+..++.   .       ..+......+......++++++...+.+++..
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~-------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  253 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP---Q-------LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV  253 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---H-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh---H-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            89999999999999999999999999997764331   1       11112233444445667888888888888874

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.29  E-value=3.4e-11  Score=104.73  Aligned_cols=96  Identities=16%  Similarity=0.069  Sum_probs=91.8

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL   88 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (281)
                      ..+..+..+.++|..+++.|+|++|+.+|+++++++|+++.+++++|.+|..+|++++|+.++++|++++|.+..++..+
T Consensus       268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l  347 (370)
T 1ihg_A          268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  347 (370)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            67888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcChHHHHHH
Q 023501           89 GQTLLQRNEYADGIKE  104 (281)
Q Consensus        89 a~~~~~~g~~~~A~~~  104 (281)
                      +.++..+++++++...
T Consensus       348 ~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          348 LKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999998887654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.29  E-value=5.2e-11  Score=86.58  Aligned_cols=99  Identities=14%  Similarity=0.016  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHH
Q 023501           49 IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQE  128 (281)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~  128 (281)
                      ..++.+|.++...|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|+...       .   
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~-------~---   87 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA-------V---   87 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------H---
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------H---
Confidence            457889999999999999999999999999999999999999999999999999999999999887322       2   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501          129 LARAKYLLWEQESSKRSWELQSLKEACEAALEEKH  163 (281)
Q Consensus       129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (281)
                            ....+......++..++...++++++..+
T Consensus        88 ------~~~la~~~~~~g~~~~A~~~~~~al~~~P  116 (121)
T 1hxi_A           88 ------HAALAVSHTNEHNANAALASLRAWLLSQP  116 (121)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             ------HHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence                  22233334456777888888888876544

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=3.1e-12  Score=80.45  Aligned_cols=48  Identities=19%  Similarity=0.345  Sum_probs=41.0

Q ss_pred             CCCCCCcccccCCcccccCceecCCCcccccchHHhHhcc--CCCCCCCC
Q 023501          201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDK--VGKFDPIT  248 (281)
Q Consensus       201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~--~~~~cP~~  248 (281)
                      ...+...+.|+||.+.+.+||+++|||+||+.||.+|+..  ....||+|
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A            9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            3455678899999999999999999999999999999754  33469987

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.28  E-value=3.4e-11  Score=101.82  Aligned_cols=141  Identities=9%  Similarity=0.016  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---   81 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---   81 (281)
                      ...+..+..+|..+...|+|++|+.+|.+|+.+.+.      .+.++.++|.+|.. |++++|+..+++|+.+.|..   
T Consensus        73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~  151 (307)
T 2ifu_A           73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL  151 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence            455778889999999999999999999999988432      25688899999988 99999999999999988753   


Q ss_pred             ---hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           82 ---VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAA  158 (281)
Q Consensus        82 ---~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (281)
                         ..++..+|.++..+|++++|+..|++++.+.|.....   .       ................+++.++...++++
T Consensus       152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~-------~~~~~~~~~g~~~~~~g~~~~A~~~~~~a  221 (307)
T 2ifu_A          152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY---P-------TCYKKCIAQVLVQLHRADYVAAQKCVRES  221 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---H-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh---h-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence               5788899999999999999999999999987764331   1       11112222333334456777788888887


Q ss_pred             HHHhh
Q 023501          159 LEEKH  163 (281)
Q Consensus       159 l~~~~  163 (281)
                      + ..+
T Consensus       222 l-~~p  225 (307)
T 2ifu_A          222 Y-SIP  225 (307)
T ss_dssp             T-TST
T ss_pred             h-CCC
Confidence            7 554

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.28  E-value=7.4e-13  Score=85.10  Aligned_cols=53  Identities=21%  Similarity=0.374  Sum_probs=47.4

Q ss_pred             cccccCCcccccCc-------eecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCccc
Q 023501          207 YLCCKITLDIFRDP-------VITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPN  260 (281)
Q Consensus       207 ~~~c~i~~~~~~~p-------v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n  260 (281)
                      .+.||||.+.+.+|       ++++|||+||+.||.+|+..+. .||+||.++...++.++
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~~   62 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYHPI   62 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCS-BCTTTCCBCTTTCEEEC
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCC-CCCCCCccCCccceeee
Confidence            57899999999988       7899999999999999998766 59999999998777765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.28  E-value=4.5e-11  Score=85.81  Aligned_cols=94  Identities=26%  Similarity=0.370  Sum_probs=86.5

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      ++.+....|..+..+..+|..++..|++++|+..|.+++...|.++.++.++|.++...|++++|+..++++++++|.++
T Consensus        32 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  111 (125)
T 1na0_A           32 YQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA  111 (125)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence            34455556677889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhc
Q 023501           83 KGHYLLGQTLLQRN   96 (281)
Q Consensus        83 ~a~~~la~~~~~~g   96 (281)
                      .++..+|.++...|
T Consensus       112 ~~~~~l~~~~~~~g  125 (125)
T 1na0_A          112 EAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999988765

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.28  E-value=7.5e-11  Score=102.27  Aligned_cols=143  Identities=14%  Similarity=0.129  Sum_probs=116.9

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc--
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP------IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS--   81 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--   81 (281)
                      .+..+..+..+|..++..|+|++|+.+|.+++.+.+...      .++.++|.+|..+|++++|+..+++++.+.|..  
T Consensus       183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  262 (406)
T 3sf4_A          183 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD  262 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC
Confidence            566788899999999999999999999999998866543      499999999999999999999999999998766  


Q ss_pred             ----hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           82 ----VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEA  157 (281)
Q Consensus        82 ----~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (281)
                          ..++..+|.++...|++++|+..+.+++.+.+.....   .       .........+......+++.++...+.+
T Consensus       263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~  332 (406)
T 3sf4_A          263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR---I-------GEGRACWSLGNAYTALGNHDQAMHFAEK  332 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---H-------HHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc---H-------HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                7899999999999999999999999999997653331   1       1112223334444566778888888888


Q ss_pred             HHHHh
Q 023501          158 ALEEK  162 (281)
Q Consensus       158 ~l~~~  162 (281)
                      +++..
T Consensus       333 al~~~  337 (406)
T 3sf4_A          333 HLEIS  337 (406)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.28  E-value=5.8e-11  Score=108.82  Aligned_cols=155  Identities=11%  Similarity=0.041  Sum_probs=125.8

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc--CHHHHHHH
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDR----------YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN--DWTKVEAD   70 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~   70 (281)
                      .+.++..+|+...+|..+|..+...|+          +++|+.++++++..+|.+..+|+.|+.++..++  +|++|+..
T Consensus        52 ~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~  131 (567)
T 1dce_A           52 TSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELEL  131 (567)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred             HHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHH
Confidence            456677789999999999999999988          999999999999999999999999999999999  78999999


Q ss_pred             HHHHHhhcCcchhHHHHHHHHHHHhc-ChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHH-----HHH
Q 023501           71 CRKAIQLDHDSVKGHYLLGQTLLQRN-EYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQES-----SKR  144 (281)
Q Consensus        71 ~~~al~l~p~~~~a~~~la~~~~~~g-~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~  144 (281)
                      ++++++++|.+..||..++.++..+| .++++++.+.++++.+|.+.       ..+...+.+...+.....     ...
T Consensus       132 ~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~-------saW~~r~~ll~~l~~~~~~~~~~~~~  204 (567)
T 1dce_A          132 CARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY-------SSWHYRSCLLPQLHPQPDSGPQGRLP  204 (567)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH-------HHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred             HHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCc-------cHHHHHHHHHHhhccccccccccccc
Confidence            99999999999999999999999999 99999999999999988732       223222222211100000     011


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q 023501          145 SWELQSLKEACEAALEEKHV  164 (281)
Q Consensus       145 ~~~~~~~~~~~~~~l~~~~~  164 (281)
                      .+.++++.+.+.+++..+|.
T Consensus       205 ~~~~~eel~~~~~ai~~~P~  224 (567)
T 1dce_A          205 ENVLLKELELVQNAFFTDPN  224 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHHHhhCCC
Confidence            35677788888888887654

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.28  E-value=6.1e-12  Score=84.16  Aligned_cols=58  Identities=17%  Similarity=0.246  Sum_probs=48.9

Q ss_pred             CCCCCcccccCCcccccCc---eecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCccc
Q 023501          202 AEVPDYLCCKITLDIFRDP---VITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPN  260 (281)
Q Consensus       202 ~~~p~~~~c~i~~~~~~~p---v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n  260 (281)
                      ......+.|+||.+.|.+|   ++++|||+||..||.+|+.... .||+||.++...++.+|
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~~   70 (78)
T 2ect_A           10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD-SCPVCRKSLTGQNTATN   70 (78)
T ss_dssp             TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTC-SCTTTCCCCCCSCSCCC
T ss_pred             ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCC-cCcCcCCccCCcccCCC
Confidence            3445678999999999876   3579999999999999998775 59999999998777765

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.27  E-value=3.4e-11  Score=86.35  Aligned_cols=95  Identities=16%  Similarity=0.104  Sum_probs=81.7

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      .++.++...|+.+..+..+|..++..|+|++|+..|.+++..+|.++.++.++|.+|..+|++++|+..++++++++|..
T Consensus         7 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   86 (115)
T 2kat_A            7 RLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR   86 (115)
T ss_dssp             HHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            35667777888999999999999999999999999999999999999999999999999999999999999999999864


Q ss_pred             h--hHHHHHHHHHHHhc
Q 023501           82 V--KGHYLLGQTLLQRN   96 (281)
Q Consensus        82 ~--~a~~~la~~~~~~g   96 (281)
                      .  .+...+...+..++
T Consensus        87 ~~~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           87 GDQQVVKELQVFLRRLA  103 (115)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhc
Confidence            3  44444444444443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.27  E-value=2e-10  Score=86.85  Aligned_cols=109  Identities=14%  Similarity=0.181  Sum_probs=88.9

Q ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc-------chh-----HHHHHHHHHHHhcChHHHHHHHHHHHhh---
Q 023501           47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD-------SVK-----GHYLLGQTLLQRNEYADGIKELEKALNL---  111 (281)
Q Consensus        47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-------~~~-----a~~~la~~~~~~g~~~~A~~~~~kal~~---  111 (281)
                      .+..+.++|..++++|+|++|+..|++|++++|+       +..     +|.++|.++..+|+|++|+..|.+++++   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            3567889999999999999999999999999999       444     9999999999999999999999999999   


Q ss_pred             ----ccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 023501          112 ----GRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDI  167 (281)
Q Consensus       112 ----~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  167 (281)
                          +|+.       ...+     ++.....+......++++++...++++++..|....
T Consensus        90 ~~e~~pd~-------~~A~-----~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           90 RGELNQDE-------GKLW-----ISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             HCCTTSTH-------HHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             cccCCCch-------HHHH-----HHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence                8861       1111     011244455566778899999999999998776444

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=2.4e-12  Score=84.04  Aligned_cols=53  Identities=19%  Similarity=0.313  Sum_probs=46.4

Q ss_pred             CCCCCCcccccCCcccccCc-------eecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501          201 PAEVPDYLCCKITLDIFRDP-------VITPSGVTYERAVILDHLDKVGKFDPITREPLRE  254 (281)
Q Consensus       201 ~~~~p~~~~c~i~~~~~~~p-------v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~  254 (281)
                      ....+..+.|+||.+.+.+|       ++++|||+||..||..|+.... .||+||.++..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~   68 (69)
T 2ea6_A            9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINH   68 (69)
T ss_dssp             CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCS-SCTTTCCCCCC
T ss_pred             ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCC-CCCCCCCccCc
Confidence            34556788999999999998       8899999999999999998766 59999998864

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.26  E-value=1.4e-10  Score=97.51  Aligned_cols=142  Identities=15%  Similarity=0.136  Sum_probs=114.1

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc--
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS--   81 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--   81 (281)
                      .+..+..+..+|..++..|++++|+.+|.+++...+..      +.++.++|.++...|++++|+..+++++.+.+..  
T Consensus       179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  258 (338)
T 3ro2_A          179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD  258 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence            55667889999999999999999999999999886543      3499999999999999999999999999988765  


Q ss_pred             ----hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           82 ----VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEA  157 (281)
Q Consensus        82 ----~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (281)
                          ..++..+|.++..+|++++|+..+++++.+.+.....          ..........+......++..++...+.+
T Consensus       259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~  328 (338)
T 3ro2_A          259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR----------IGEGRACWSLGNAYTALGNHDQAMHFAEK  328 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc----------HHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence                7899999999999999999999999999986542221          11122223334445566777788888887


Q ss_pred             HHHH
Q 023501          158 ALEE  161 (281)
Q Consensus       158 ~l~~  161 (281)
                      ++..
T Consensus       329 a~~~  332 (338)
T 3ro2_A          329 HLEI  332 (338)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            7764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.26  E-value=5.6e-11  Score=84.45  Aligned_cols=90  Identities=10%  Similarity=0.057  Sum_probs=83.8

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      ++.+....|..+..+..+|..++..|+|++|+..|.+++..+|+++.++.++|.++..+|++++|+..++++++++|.++
T Consensus        27 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~  106 (118)
T 1elw_A           27 YSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP  106 (118)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence            45566667788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHH
Q 023501           83 KGHYLLGQTL   92 (281)
Q Consensus        83 ~a~~~la~~~   92 (281)
                      .++..++.+.
T Consensus       107 ~~~~~l~~~~  116 (118)
T 1elw_A          107 QLKEGLQNME  116 (118)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999988765

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.25  E-value=9.9e-11  Score=86.12  Aligned_cols=107  Identities=7%  Similarity=-0.037  Sum_probs=88.7

Q ss_pred             HhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcch
Q 023501           42 TLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYI  121 (281)
Q Consensus        42 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~  121 (281)
                      ..+|.++..+..+|.+++..|+|++|+..+++++.++|.++.+++.+|.++..+|++++|+..+.+++.++|+...    
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~----   78 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK----   78 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH----
Confidence            4567889999999999999999999999999999999999999999999999999999999999999999876221    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501          122 VEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus       122 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                         .         ....+......+++.++...+.++++..+.
T Consensus        79 ---~---------~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           79 ---A---------HFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             ---H---------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ---H---------HHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence               2         222333344557788888888888887664

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.25  E-value=1.8e-10  Score=95.21  Aligned_cols=98  Identities=16%  Similarity=0.163  Sum_probs=86.9

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCcchhHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLK----RNDWTKVEADCRKAIQLDHDSVKGH   85 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~   85 (281)
                      .+..+..+..+|..++..|++++|+.+|.++++  |+++.++.++|.+|..    .+++++|+..++++++++  ++.++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~   77 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC   77 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence            356788899999999999999999999999988  7788899999999999    999999999999999886  78899


Q ss_pred             HHHHHHHHH----hcChHHHHHHHHHHHhh
Q 023501           86 YLLGQTLLQ----RNEYADGIKELEKALNL  111 (281)
Q Consensus        86 ~~la~~~~~----~g~~~~A~~~~~kal~~  111 (281)
                      +.+|.++..    .+++++|+..|+++++.
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~  107 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL  107 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHc
Confidence            999999999    99999999999999887

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.25  E-value=1.4e-10  Score=97.15  Aligned_cols=138  Identities=12%  Similarity=0.063  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-------cCc
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQL-------DHD   80 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-------~p~   80 (281)
                      +..+..+|..++..++|++|+.+|.+++...+..      ..++.++|.+|..+|+|++|+..+++|+++       .+.
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence            3455568999999999999999999999975442      347999999999999999999999999952       344


Q ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 023501           81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSW-ELQSLKEACEAAL  159 (281)
Q Consensus        81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l  159 (281)
                      ...+++.+|.+|..+|++++|+..+++++++.+..... .....+...++.+         ....+ .++++...+.+++
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~-~~~~~~~~~lg~~---------~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM-ALIGQLYYQRGEC---------LRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC-TTHHHHHHHHHHH---------HHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHHH---------HHHhCCcHHHHHHHHHHHH
Confidence            56799999999999999999999999999997664332 2233343333333         33344 2467777777777


Q ss_pred             HH
Q 023501          160 EE  161 (281)
Q Consensus       160 ~~  161 (281)
                      ..
T Consensus       265 ~i  266 (293)
T 3u3w_A          265 FF  266 (293)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.24  E-value=1.7e-11  Score=102.48  Aligned_cols=110  Identities=12%  Similarity=0.074  Sum_probs=91.3

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      +..++...|..+..+..+|..++..|+|++|+..|++++.++|+++.+++++|.+|..+|++++|+..++++++++|++.
T Consensus        27 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           27 YGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             HHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence            45667777888999999999999999999999999999999999999999999999999999999999999999999753


Q ss_pred             hHH-------------------------------HHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           83 KGH-------------------------------YLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        83 ~a~-------------------------------~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ..+                               ..++..  ..|++++|++.++++++++|+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~  167 (281)
T 2c2l_A          107 LNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHED  167 (281)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccc
Confidence            211                               111111  256777788778777777654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.24  E-value=4.2e-10  Score=97.67  Aligned_cols=108  Identities=17%  Similarity=0.089  Sum_probs=97.7

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHh-----hc
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCP------NVPIYWTNRALCHLKRNDWTKVEADCRKAIQ-----LD   78 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----l~   78 (281)
                      .+..+..+..+|..+...|+|++|+.+|.+|+.+.+      ..+.++.++|.+|..+|++++|+..+++|+.     .+
T Consensus       178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~  257 (378)
T 3q15_A          178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP  257 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred             hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence            446788999999999999999999999999998743      2357899999999999999999999999999     78


Q ss_pred             CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           79 HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        79 p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      |..+.+++.+|.++..+|++++|+..+++++.+.+..++
T Consensus       258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  296 (378)
T 3q15_A          258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH  296 (378)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence            888999999999999999999999999999999776444

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.23  E-value=1e-11  Score=82.57  Aligned_cols=55  Identities=18%  Similarity=0.227  Sum_probs=44.9

Q ss_pred             CCCCcccccCCccccc--CceecC--CCcccccchHHhHhccCCCCCCCCCCCcCCCCC
Q 023501          203 EVPDYLCCKITLDIFR--DPVITP--SGVTYERAVILDHLDKVGKFDPITREPLRESQL  257 (281)
Q Consensus       203 ~~p~~~~c~i~~~~~~--~pv~~~--~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~  257 (281)
                      ...+++.||||.+.+.  +|++.|  |||+||+.||.+++......||.||.++....+
T Consensus         7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            3467889999999884  566666  999999999999997655569999999886543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.23  E-value=4.4e-10  Score=97.58  Aligned_cols=171  Identities=17%  Similarity=0.120  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc-------c
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCP------NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD-------S   81 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-------~   81 (281)
                      ..+..+|..++..|+|++|+.+|.+|+.+.+      ..+.++.++|.+|..+|+++.|+..+++|+++.+.       .
T Consensus       102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  181 (378)
T 3q15_A          102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT  181 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence            3567889999999999999999999998742      25689999999999999999999999999987543       3


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEE  161 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (281)
                      +.++..+|.++..+|++++|+..|.+++.+.+..++.   .       ..+......+......++++++...+.+++..
T Consensus       182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~---~-------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~  251 (378)
T 3q15_A          182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND---R-------FIAISLLNIANSYDRSGDDQMAVEHFQKAAKV  251 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---H-------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH---H-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            5688999999999999999999999999986543332   0       11222333344455667888888888888873


Q ss_pred             hhhhhhhh------hccchhhhhhHHHHHHHHHHHHHHHh
Q 023501          162 KHVLDISR------KEGFLDEASSTHLKQMEALRQVFRKA  195 (281)
Q Consensus       162 ~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~  195 (281)
                      ........      .-+.+....+++++....+.+.+...
T Consensus       252 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  291 (378)
T 3q15_A          252 SREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI  291 (378)
T ss_dssp             HHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            22111100      01222334455666666666665544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.23  E-value=1.8e-10  Score=97.28  Aligned_cols=152  Identities=9%  Similarity=-0.073  Sum_probs=118.0

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCchHHHHHHHHHH----HHh---cCHHHHHHHHHH
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKD--RYGAAIDAYTEAITLCPNVPIYWTNRALCH----LKR---NDWTKVEADCRK   73 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~   73 (281)
                      .+.++..+|+...+|..+|..+...+  ++++++.++..++..+|.+..+|..|+.++    ..+   +++++++..+++
T Consensus        56 t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~  135 (306)
T 3dra_A           56 TELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEA  135 (306)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHH
T ss_pred             HHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence            45667778899999999999999998  999999999999999999999999999998    667   789999999999


Q ss_pred             HHhhcCcchhHHHHHHHHHHHhcChH--HHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           74 AIQLDHDSVKGHYLLGQTLLQRNEYA--DGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSL  151 (281)
Q Consensus        74 al~l~p~~~~a~~~la~~~~~~g~~~--~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  151 (281)
                      +++.+|.+..+|+.++.++..+|.++  ++++.+.++++.+|.+..       .+...+.+...+.   .......+.+.
T Consensus       136 ~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s-------AW~~R~~ll~~l~---~~~~~~~~~eE  205 (306)
T 3dra_A          136 MLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS-------AWSHRFFLLFSKK---HLATDNTIDEE  205 (306)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHHSSG---GGCCHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHhcc---ccchhhhHHHH
Confidence            99999999999999999999999988  999999999999776322       2221111111110   00012235667


Q ss_pred             HHHHHHHHHHhhh
Q 023501          152 KEACEAALEEKHV  164 (281)
Q Consensus       152 ~~~~~~~l~~~~~  164 (281)
                      .+.+.+++..++.
T Consensus       206 l~~~~~aI~~~p~  218 (306)
T 3dra_A          206 LNYVKDKIVKCPQ  218 (306)
T ss_dssp             HHHHHHHHHHCSS
T ss_pred             HHHHHHHHHhCCC
Confidence            7777777776553

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.21  E-value=5.8e-11  Score=99.59  Aligned_cols=102  Identities=15%  Similarity=-0.009  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc----
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITL-------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS----   81 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----   81 (281)
                      .+..+..+|..++..|+|++|+.+|.+++..       .+..+.+++++|.+|..+|+|++|+..+++|+++.+..    
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~  233 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence            4668999999999999999999999999953       22345799999999999999999999999999988654    


Q ss_pred             --hhHHHHHHHHHHHhcC-hHHHHHHHHHHHhhccC
Q 023501           82 --VKGHYLLGQTLLQRNE-YADGIKELEKALNLGRG  114 (281)
Q Consensus        82 --~~a~~~la~~~~~~g~-~~~A~~~~~kal~~~p~  114 (281)
                        +.+++.+|.++..+|+ +++|+..|++|+.+...
T Consensus       234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~  269 (293)
T 3u3w_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI  269 (293)
T ss_dssp             THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence              7899999999999995 69999999999988644

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.20  E-value=1e-11  Score=77.27  Aligned_cols=47  Identities=19%  Similarity=0.220  Sum_probs=40.6

Q ss_pred             CCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501          205 PDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRES  255 (281)
Q Consensus       205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~  255 (281)
                      .+.+.|+||.+.+.+|++++|||+||+.||..|    ...||+||.++...
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG   50 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence            356889999999999999999999999999883    33599999988753

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.20  E-value=2.2e-10  Score=85.82  Aligned_cols=104  Identities=15%  Similarity=0.155  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC-----
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDH-----   79 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p-----   79 (281)
                      ...+..+..+|..++..|+|++|+.+|.+++...+..      +.++.++|.++...|++++|+..+++++++.+     
T Consensus        46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  125 (164)
T 3ro3_A           46 AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR  125 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch
Confidence            3445789999999999999999999999999886542      67899999999999999999999999998753     


Q ss_pred             -cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           80 -DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        80 -~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                       ....++..+|.++..+|++++|+..+.+++++...
T Consensus       126 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          126 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence             33678999999999999999999999999988543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.20  E-value=1.2e-09  Score=91.49  Aligned_cols=145  Identities=11%  Similarity=0.036  Sum_probs=112.7

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc-
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP------IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS-   81 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-   81 (281)
                      .++.....+...+..++..|+|++|+..|.+++...+...      ..+..+|.++...|++++|+..+++|+++.+.. 
T Consensus        70 ~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~  149 (293)
T 2qfc_A           70 SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI  149 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS
T ss_pred             cchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC
Confidence            3456677888999999999999999999999999887643      456778999999999999999999999876543 


Q ss_pred             -----hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           82 -----VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACE  156 (281)
Q Consensus        82 -----~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (281)
                           ..+++.+|.+|..+|++++|+..|++++.+....+......         +......+......++++++...++
T Consensus       150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~---------~~~~~nlg~~y~~~~~y~~Al~~~~  220 (293)
T 2qfc_A          150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD---------VKVRYNHAKALYLDSRYEESLYQVN  220 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH---------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch---------HHHHHhHHHHHHHHhhHHHHHHHHH
Confidence                 56899999999999999999999999996643322210001         0122334444556788888888888


Q ss_pred             HHHHHh
Q 023501          157 AALEEK  162 (281)
Q Consensus       157 ~~l~~~  162 (281)
                      ++++..
T Consensus       221 kal~~~  226 (293)
T 2qfc_A          221 KAIEIS  226 (293)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.20  E-value=2.6e-09  Score=90.84  Aligned_cols=159  Identities=10%  Similarity=0.026  Sum_probs=124.8

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc--CHHHHHHH
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDR----------YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN--DWTKVEAD   70 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~   70 (281)
                      .+.++..+|+...+|..++..+...+.          +++++.++..++..+|.+..+|..|+.++..++  .+++++..
T Consensus        53 t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~  132 (331)
T 3dss_A           53 TSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELEL  132 (331)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHH
T ss_pred             HHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHH
Confidence            456677789999999999999987766          789999999999999999999999999999999  49999999


Q ss_pred             HHHHHhhcCcchhHHHHHHHHHHHhcC-hHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHH-----HHHHHH
Q 023501           71 CRKAIQLDHDSVKGHYLLGQTLLQRNE-YADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWE-----QESSKR  144 (281)
Q Consensus        71 ~~~al~l~p~~~~a~~~la~~~~~~g~-~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~  144 (281)
                      +.++++++|.|..+|..++.++..+|. ++++++.+.+++..+|.+..       .+.....+...+..     ......
T Consensus       133 ~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S-------AW~~R~~ll~~l~~~~~~~~~~~~~  205 (331)
T 3dss_A          133 CARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS-------SWHYRSCLLPQLHPQPDSGPQGRLP  205 (331)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH-------HHHHHHHHHHHHSCCC------CCC
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHhhhccccccccccc
Confidence            999999999999999999999999999 69999999999999887333       22222222111100     000011


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhh
Q 023501          145 SWELQSLKEACEAALEEKHVLDIS  168 (281)
Q Consensus       145 ~~~~~~~~~~~~~~l~~~~~~~~~  168 (281)
                      .+.+.+..+.+.+++...|....+
T Consensus       206 ~~~~~eEle~~~~ai~~~P~d~Sa  229 (331)
T 3dss_A          206 ENVLLKELELVQNAFFTDPNDQSA  229 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCCCHHH
Confidence            255677788888888877764443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.20  E-value=1e-10  Score=98.85  Aligned_cols=105  Identities=14%  Similarity=0.116  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---   81 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---   81 (281)
                      ...+..+..+|..+.. |+|++|+.+|++|+.+.|..      +.++.++|.+|..+|+|++|+..+++++++.|.+   
T Consensus       113 ~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  191 (307)
T 2ifu_A          113 DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY  191 (307)
T ss_dssp             HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence            3467889999999999 99999999999999997653      6789999999999999999999999999997754   


Q ss_pred             ---hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           82 ---VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        82 ---~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                         ..+++.+|.++..+|++++|+..|++++ ++|....
T Consensus       192 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~  229 (307)
T 2ifu_A          192 PTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG  229 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence               3478889999999999999999999999 9887544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.19  E-value=3.6e-10  Score=78.11  Aligned_cols=86  Identities=13%  Similarity=0.071  Sum_probs=74.6

Q ss_pred             CCCchHHHHHHHHHHHHhcC---HHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcc
Q 023501           44 CPNVPIYWTNRALCHLKRND---WTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGY  120 (281)
Q Consensus        44 ~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~  120 (281)
                      +|.++.++..+|.+++..++   .++|...+++|++++|+++.+++.+|.+++..|+|++|+..|+++++.+|. .+.  
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~--   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD--   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC--
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc--
Confidence            68899999999999976665   799999999999999999999999999999999999999999999999887 443  


Q ss_pred             hHHHHHHHHHHHH
Q 023501          121 IVEDIWQELARAK  133 (281)
Q Consensus       121 ~~~~~~~~l~~~~  133 (281)
                       ...+...+.+++
T Consensus        79 -~~~i~~~I~~A~   90 (93)
T 3bee_A           79 -RVTIIESINKAK   90 (93)
T ss_dssp             -HHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHH
Confidence             455555555543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=1.7e-10  Score=85.72  Aligned_cols=92  Identities=14%  Similarity=-0.010  Sum_probs=82.3

Q ss_pred             hhhhhhchHHH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 023501            3 LEAGLAGVAKQ---AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH   79 (281)
Q Consensus         3 l~~~~~~~~~~---a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p   79 (281)
                      ++.++...|+.   +..+..+|..++..|+|++|+..|.+++..+|+++.++.++|.++..+|++++|+..++++++++|
T Consensus        51 ~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  130 (148)
T 2dba_A           51 YTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP  130 (148)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            34445544554   889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHH
Q 023501           80 DSVKGHYLLGQTLLQ   94 (281)
Q Consensus        80 ~~~~a~~~la~~~~~   94 (281)
                      .+..++..++.+...
T Consensus       131 ~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          131 KNKVFQEALRNISGP  145 (148)
T ss_dssp             SCHHHHHHHHHHHCS
T ss_pred             CcHHHHHHHHHHHhh
Confidence            999999888876543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.18  E-value=7e-10  Score=94.34  Aligned_cols=156  Identities=13%  Similarity=-0.000  Sum_probs=123.1

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC-HHHHHHHHHHHHhhc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKD--RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRND-WTKVEADCRKAIQLD   78 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~   78 (281)
                      +++.++..+|++..+|..++..+...+  .+++++.++.++++.+|.|..+|+.++.+...+|. +++++.++.++|+.+
T Consensus        96 ~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~  175 (331)
T 3dss_A           96 FLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN  175 (331)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC
Confidence            345566778999999999999999988  49999999999999999999999999999999998 699999999999999


Q ss_pred             CcchhHHHHHHHHHHHh--------------cChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHH-H-HHHHH
Q 023501           79 HDSVKGHYLLGQTLLQR--------------NEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLL-W-EQESS  142 (281)
Q Consensus        79 p~~~~a~~~la~~~~~~--------------g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~~  142 (281)
                      |.|..||..++.++..+              +.++++++.+.+++.++|++..       .+..+.-+-... . .....
T Consensus       176 p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~S-------aW~Y~r~ll~~~~~~~~~~~  248 (331)
T 3dss_A          176 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS-------AWFYHRWLLGAGSGRCELSV  248 (331)
T ss_dssp             SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHH-------HHHHHHHHHHSSSCGGGCCH
T ss_pred             CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHhccCccccch
Confidence            99999999999999988              6689999999999999887332       222211111100 0 00012


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Q 023501          143 KRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus       143 ~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      .+.+.++++.+.+.++++..|+
T Consensus       249 ~~~~~l~~el~~~~elle~~pd  270 (331)
T 3dss_A          249 EKSTVLQSELESCKELQELEPE  270 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHhhCcc
Confidence            3345666677777777776654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.17  E-value=5.8e-10  Score=101.27  Aligned_cols=113  Identities=15%  Similarity=0.094  Sum_probs=103.3

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHH-hCCCchHHHHHHHHHHHHhcCHHH
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFS-------KDRYG-------AAIDAYTEAIT-LCPNVPIYWTNRALCHLKRNDWTK   66 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~   66 (281)
                      ++++++...|..+..|...|..+..       .|+++       +|+..|++|+. ..|++..+|..+|..+...|++++
T Consensus       260 ~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~  339 (530)
T 2ooe_A          260 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK  339 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence            3556677788889999999999986       79987       99999999997 799999999999999999999999


Q ss_pred             HHHHHHHHHhhcCcch-hHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           67 VEADCRKAIQLDHDSV-KGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        67 A~~~~~~al~l~p~~~-~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      |...++++++++|.++ .+|..+|.++...|++++|...|.++++..|.
T Consensus       340 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~  388 (530)
T 2ooe_A          340 VHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART  388 (530)
T ss_dssp             HHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence            9999999999999985 69999999999999999999999999998654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.16  E-value=1e-09  Score=90.55  Aligned_cols=98  Identities=17%  Similarity=0.135  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCcch
Q 023501           11 AKQAEQLRLDGNYYFS----KDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLK----RNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      +..+..+..+|..+..    .+++++|+.+|.++++.+  ++.++.++|.+|..    .+++++|+..++++++++  ++
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~  110 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YA  110 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred             CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Cc
Confidence            4567889999999999    999999999999999985  79999999999999    999999999999999985  88


Q ss_pred             hHHHHHHHHHHH----hcChHHHHHHHHHHHhhc
Q 023501           83 KGHYLLGQTLLQ----RNEYADGIKELEKALNLG  112 (281)
Q Consensus        83 ~a~~~la~~~~~----~g~~~~A~~~~~kal~~~  112 (281)
                      .+++.+|.+|..    .+++++|+.+|+++++..
T Consensus       111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~  144 (273)
T 1ouv_A          111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN  144 (273)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence            999999999999    999999999999999884

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.16  E-value=4.9e-11  Score=84.04  Aligned_cols=72  Identities=18%  Similarity=0.254  Sum_probs=69.0

Q ss_pred             hCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           43 LCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        43 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ++|+++.++..+|.++...|++++|+..++++++++|.+..+++.+|.++..+|++++|+..+++++.+.|.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            368899999999999999999999999999999999999999999999999999999999999999999776

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.16  E-value=2.5e-11  Score=78.89  Aligned_cols=48  Identities=15%  Similarity=0.149  Sum_probs=42.3

Q ss_pred             CcccccCCcccccCc-eecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501          206 DYLCCKITLDIFRDP-VITPSGVTYERAVILDHLDKVGKFDPITREPLRE  254 (281)
Q Consensus       206 ~~~~c~i~~~~~~~p-v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~  254 (281)
                      ....|+||.+.+.+| ++++|||+||..||.+|+..+. .||+||.++..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP-TCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSC-STTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcC-cCcCCChhhHh
Confidence            356799999999997 6799999999999999998776 59999998863

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.15  E-value=3.4e-10  Score=82.25  Aligned_cols=91  Identities=11%  Similarity=0.058  Sum_probs=78.0

Q ss_pred             hhhhchHHHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 023501            5 AGLAGVAKQA---EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---PIYWTNRALCHLKRNDWTKVEADCRKAIQLD   78 (281)
Q Consensus         5 ~~~~~~~~~a---~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~   78 (281)
                      .++...|+..   ..+..+|..++..|+|++|+..|.+++...|++   +.++.++|.++..+|++++|+..++++++..
T Consensus        27 ~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           27 SFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             HHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            3444344444   789999999999999999999999999999999   8899999999999999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHh
Q 023501           79 HDSVKGHYLLGQTLLQR   95 (281)
Q Consensus        79 p~~~~a~~~la~~~~~~   95 (281)
                      |++..+...+..+....
T Consensus       107 p~~~~~~~a~~~l~~l~  123 (129)
T 2xev_A          107 PGSDAARVAQERLQSIR  123 (129)
T ss_dssp             TTSHHHHHHHHHHHHHC
T ss_pred             CCChHHHHHHHHHHHHH
Confidence            99988776665544433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.14  E-value=5.1e-10  Score=87.76  Aligned_cols=106  Identities=14%  Similarity=0.085  Sum_probs=93.1

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC----CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc-
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL---CP----NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD-   80 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-   80 (281)
                      ..+..+..+..+|..+...|++++|+.+|.+++..   .+    ..+.++.++|.++..+|++++|+..+++++.+.+. 
T Consensus        61 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  140 (203)
T 3gw4_A           61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA  140 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence            56778899999999999999999999999999998   44    23578999999999999999999999999987532 


Q ss_pred             -----chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           81 -----SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        81 -----~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                           ...++..+|.++..+|++++|+..+.+++.+...
T Consensus       141 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  179 (203)
T 3gw4_A          141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE  179 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence                 2345689999999999999999999999998654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.13  E-value=6.8e-10  Score=78.31  Aligned_cols=69  Identities=13%  Similarity=0.078  Sum_probs=66.2

Q ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      ++..+.++|.+++..|+|++|+..++++++++|.++.+++.+|.++..+|++++|+..+.+++.++|+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            467899999999999999999999999999999999999999999999999999999999999998875

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.13  E-value=3.7e-11  Score=74.52  Aligned_cols=47  Identities=19%  Similarity=0.242  Sum_probs=41.3

Q ss_pred             CcccccCCcccccC----ceecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501          206 DYLCCKITLDIFRD----PVITPSGVTYERAVILDHLDKVGKFDPITREPLR  253 (281)
Q Consensus       206 ~~~~c~i~~~~~~~----pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~  253 (281)
                      ....|+||.+.+.+    |++++|||.||..||.+|+.... .||+||.+++
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY-RCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTC-CCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCC-cCCCCCCcCC
Confidence            35679999999876    77899999999999999998875 5999998875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.13  E-value=3.3e-10  Score=103.79  Aligned_cols=114  Identities=11%  Similarity=-0.007  Sum_probs=106.9

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKD--RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN-DWTKVEADCRKAIQLD   78 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~   78 (281)
                      +++.++..+|+...+|..+|..+.+.+  +|++|+.++.++++.+|.+..+|..|+.+...+| .++++++++.++|+.+
T Consensus        95 ~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~  174 (567)
T 1dce_A           95 FLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN  174 (567)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence            355677788999999999999999999  7799999999999999999999999999999999 9999999999999999


Q ss_pred             CcchhHHHHHHHHHHHh--------------cChHHHHHHHHHHHhhccCC
Q 023501           79 HDSVKGHYLLGQTLLQR--------------NEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        79 p~~~~a~~~la~~~~~~--------------g~~~~A~~~~~kal~~~p~~  115 (281)
                      |.+..+|+.+|.++..+              +.++++++.+.+++.++|+.
T Consensus       175 p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~  225 (567)
T 1dce_A          175 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND  225 (567)
T ss_dssp             CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCC
Confidence            99999999999999986              66899999999999999884

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=1.5e-11  Score=80.47  Aligned_cols=54  Identities=22%  Similarity=0.256  Sum_probs=46.4

Q ss_pred             CCCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCC
Q 023501          201 PAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQ  256 (281)
Q Consensus       201 ~~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~  256 (281)
                      .......+.|+||.+.+.+ ++++|||+||..||.+|+.... .||+||.++...+
T Consensus         9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~   62 (70)
T 2ecn_A            9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHR-NCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCS-SCHHHHHCTTCCC
T ss_pred             hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcC-cCCCcCCcccCCC
Confidence            3445678899999999999 9999999999999999998655 5999999987543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.12  E-value=4.7e-10  Score=93.01  Aligned_cols=106  Identities=10%  Similarity=0.013  Sum_probs=72.1

Q ss_pred             hchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-c-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--Cc-ch
Q 023501            8 AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN-V-PIYWTNRALCHLKRNDWTKVEADCRKAIQLD--HD-SV   82 (281)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--p~-~~   82 (281)
                      ...|... ..+.+|..+++.++|++|+.+|++++...+. . ..+++++|.++..+|++++|+..+++++.-.  |. .+
T Consensus       130 ~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~  208 (282)
T 4f3v_A          130 VAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACAR  208 (282)
T ss_dssp             CTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHH
T ss_pred             hcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccH
Confidence            3445555 6677777777777777777777766553211 1 3467777777777777777777777776443  44 55


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .+++.+|.++..+|+.++|...|++++..+|+
T Consensus       209 da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          209 AIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            67777777777777777777777777777665

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.12  E-value=6.7e-11  Score=77.04  Aligned_cols=53  Identities=21%  Similarity=0.196  Sum_probs=44.0

Q ss_pred             CCCCCcccccCCccccc---CceecCCCcccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501          202 AEVPDYLCCKITLDIFR---DPVITPSGVTYERAVILDHLDKVGKFDPITREPLRES  255 (281)
Q Consensus       202 ~~~p~~~~c~i~~~~~~---~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~  255 (281)
                      ........|+||.+.+.   .|++++|||.||..||.+|+..+. .||+||.++...
T Consensus         9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~   64 (69)
T 2kiz_A            9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK-KCPICRVDIEAQ   64 (69)
T ss_dssp             CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCSBSCSC
T ss_pred             CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC-CCcCcCccccCc
Confidence            34456778999998885   467899999999999999998877 499999988753

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.11  E-value=1.7e-11  Score=90.69  Aligned_cols=55  Identities=20%  Similarity=0.353  Sum_probs=48.2

Q ss_pred             CCcccccCCcccccCc-------eecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCccc
Q 023501          205 PDYLCCKITLDIFRDP-------VITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPN  260 (281)
Q Consensus       205 p~~~~c~i~~~~~~~p-------v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n  260 (281)
                      ++.+.||||.+.+.+|       |+++|||+||+.||.+|+.... .||+|+.++....+.++
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~l~~l   66 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYHPI   66 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS-BCTTTCCBCTTTCEEEC
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC-CCCCCCCcCcccccccc
Confidence            4678999999999999       8999999999999999998776 59999999987665443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.11  E-value=7.1e-10  Score=94.81  Aligned_cols=112  Identities=9%  Similarity=-0.059  Sum_probs=89.4

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-c-CHHHHHHHHHHHHhhcC
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKD-RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKR-N-DWTKVEADCRKAIQLDH   79 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~al~l~p   79 (281)
                      .+.++..+|+...+|..+|..+...| .+++++.++.+++..+|.+..+|..|+.++..+ + ++++++..++++++++|
T Consensus        77 t~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp  156 (349)
T 3q7a_A           77 TEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP  156 (349)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT
T ss_pred             HHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Confidence            45566667777888888888888777 488888888888888888888888888888777 6 77888888888888888


Q ss_pred             cchhHHHHHHHHHHHhcChH--------HHHHHHHHHHhhccC
Q 023501           80 DSVKGHYLLGQTLLQRNEYA--------DGIKELEKALNLGRG  114 (281)
Q Consensus        80 ~~~~a~~~la~~~~~~g~~~--------~A~~~~~kal~~~p~  114 (281)
                      .|..+|..++.++..+|.++        ++++.+.++++.+|.
T Consensus       157 kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~  199 (349)
T 3q7a_A          157 KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR  199 (349)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence            88888888888888887777        788888888888765

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.10  E-value=7.5e-11  Score=73.11  Aligned_cols=48  Identities=19%  Similarity=0.272  Sum_probs=41.5

Q ss_pred             CCcccccCCcccccC---ceecC-CCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501          205 PDYLCCKITLDIFRD---PVITP-SGVTYERAVILDHLDKVGKFDPITREPLR  253 (281)
Q Consensus       205 p~~~~c~i~~~~~~~---pv~~~-~g~~~~~~~i~~~~~~~~~~cP~~~~~~~  253 (281)
                      .+...|+||.+.+.+   +++++ |||.||..||.+|+..+. .||+||.++.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~-~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS-TCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC-SCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCC-cCcCCCCEeE
Confidence            356779999999988   77777 999999999999998766 5999998764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.10  E-value=2.9e-10  Score=77.33  Aligned_cols=69  Identities=26%  Similarity=0.446  Sum_probs=66.2

Q ss_pred             CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           46 NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        46 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .++.++.++|.++...|++++|+..++++++++|.++.+++.+|.++...|++++|+..+++++.++|.
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~   75 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN   75 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            467899999999999999999999999999999999999999999999999999999999999999876

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.10  E-value=2.9e-10  Score=82.25  Aligned_cols=94  Identities=11%  Similarity=0.042  Sum_probs=84.0

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV-------PIYWTNRALCHLKRNDWTKVEADCRKAI   75 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al   75 (281)
                      ++.++...|..+..+..+|..++..|+|++|+.+|.+++...|.+       +.++.++|.++..+|++++|+..+++++
T Consensus        27 ~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  106 (131)
T 1elr_A           27 YDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL  106 (131)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            455666677788999999999999999999999999999998877       8999999999999999999999999999


Q ss_pred             hhcCcchhHHHHHHHHHHHhcC
Q 023501           76 QLDHDSVKGHYLLGQTLLQRNE   97 (281)
Q Consensus        76 ~l~p~~~~a~~~la~~~~~~g~   97 (281)
                      ++.| ++.....++.+...+++
T Consensus       107 ~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A          107 AEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HhCC-CHHHHHHHHHHHHHHHH
Confidence            9999 68888888888776654

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.09  E-value=4e-11  Score=82.56  Aligned_cols=50  Identities=20%  Similarity=0.339  Sum_probs=43.7

Q ss_pred             CCCcccccCCcccccC---ceecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501          204 VPDYLCCKITLDIFRD---PVITPSGVTYERAVILDHLDKVGKFDPITREPLRE  254 (281)
Q Consensus       204 ~p~~~~c~i~~~~~~~---pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~  254 (281)
                      ......|+||.+.+.+   +++++|||.||..||..|+..+. .||+||.++..
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~~   89 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG-TCPVCRCMFPP   89 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTC-BCTTTCCBSSC
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCC-cCcCcCccCCC
Confidence            3467789999998887   77899999999999999998776 59999998864

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=1.1e-10  Score=77.10  Aligned_cols=54  Identities=17%  Similarity=0.271  Sum_probs=45.4

Q ss_pred             CCCCCCcccccCCcccccCceec---CCCcccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501          201 PAEVPDYLCCKITLDIFRDPVIT---PSGVTYERAVILDHLDKVGKFDPITREPLRES  255 (281)
Q Consensus       201 ~~~~p~~~~c~i~~~~~~~pv~~---~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~  255 (281)
                      ..+......|+||.+.+.+|+.+   +|||.||..||.+|+.... .||+||.++...
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-~CP~Cr~~~~~~   65 (74)
T 2ep4_A            9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQL   65 (74)
T ss_dssp             CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS-BCTTTCCBCSSC
T ss_pred             cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC-cCCCcCcccccc
Confidence            34456678899999999987654   9999999999999998776 599999998653

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.08  E-value=1.2e-09  Score=99.08  Aligned_cols=144  Identities=10%  Similarity=0.000  Sum_probs=116.8

Q ss_pred             hhhhhhh-chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 023501            2 VLEAGLA-GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP-IYWTNRALCHLKRNDWTKVEADCRKAIQLDH   79 (281)
Q Consensus         2 ~l~~~~~-~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p   79 (281)
                      +++.++. ..|+.+..+...|..+...|++++|...|++++...|.++ .+|.+++.++...|++++|...+++|++..|
T Consensus       308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~  387 (530)
T 2ooe_A          308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR  387 (530)
T ss_dssp             HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence            3456665 5788899999999999999999999999999999999986 6999999999999999999999999999999


Q ss_pred             cchhHHHHHHHH-HHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           80 DSVKGHYLLGQT-LLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAA  158 (281)
Q Consensus        80 ~~~~a~~~la~~-~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (281)
                      .....+...|.+ +...|++++|...|+++++..|+..       .++..+..         ...+.++.+.+...++++
T Consensus       388 ~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~-------~~~~~~~~---------~~~~~g~~~~Ar~~~~~a  451 (530)
T 2ooe_A          388 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP-------EYVLAYID---------YLSHLNEDNNTRVLFERV  451 (530)
T ss_dssp             CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH-------HHHHHHHH---------HHTTTTCHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH-------HHHHHHHH---------HHHhCCCHhhHHHHHHHH
Confidence            888877766665 3468999999999999999988622       22222222         223346677788888888


Q ss_pred             HHH
Q 023501          159 LEE  161 (281)
Q Consensus       159 l~~  161 (281)
                      +..
T Consensus       452 l~~  454 (530)
T 2ooe_A          452 LTS  454 (530)
T ss_dssp             HHS
T ss_pred             Hhc
Confidence            775

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.08  E-value=9e-10  Score=92.96  Aligned_cols=113  Identities=10%  Similarity=-0.060  Sum_probs=105.0

Q ss_pred             hhhhhhchHHHHHHHHHHHHHH----Hhc---CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHH--HHHHHHHH
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYY----FSK---DRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWT--KVEADCRK   73 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~----~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~--~A~~~~~~   73 (281)
                      ++.++...|+...+|..++..+    ...   +++++++.++.++++.+|.+..+|..|+.+...+|.++  +++..+++
T Consensus        92 ~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~  171 (306)
T 3dra_A           92 CEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDK  171 (306)
T ss_dssp             HHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence            4556677889999999999999    666   79999999999999999999999999999999999998  99999999


Q ss_pred             HHhhcCcchhHHHHHHHHHHHhcC------hHHHHHHHHHHHhhccCC
Q 023501           74 AIQLDHDSVKGHYLLGQTLLQRNE------YADGIKELEKALNLGRGA  115 (281)
Q Consensus        74 al~l~p~~~~a~~~la~~~~~~g~------~~~A~~~~~kal~~~p~~  115 (281)
                      +++.+|.|..||..++.++..+|+      ++++++.+.+++.++|.+
T Consensus       172 ~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n  219 (306)
T 3dra_A          172 VIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN  219 (306)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999998      999999999999998873

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=1.1e-10  Score=77.38  Aligned_cols=49  Identities=14%  Similarity=0.205  Sum_probs=43.1

Q ss_pred             CCcccccCCcccccCc---eecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501          205 PDYLCCKITLDIFRDP---VITPSGVTYERAVILDHLDKVGKFDPITREPLRE  254 (281)
Q Consensus       205 p~~~~c~i~~~~~~~p---v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~  254 (281)
                      .....|+||.+.+.+|   ++++|||.||..||.+|+..+. .||+||.++..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~-~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR-TCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCS-SCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCC-cCcCcCCcCCC
Confidence            3567899999999887   6799999999999999998776 59999998875

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.05  E-value=4.8e-09  Score=94.24  Aligned_cols=99  Identities=10%  Similarity=-0.050  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----C---CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-------
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLC-----P---NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-------   78 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------   78 (281)
                      +....+.+..+..+|+|++|+..|.+++++.     |   .-+..+.++|.+|..+|+|++|+..+++++.+-       
T Consensus       309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~  388 (490)
T 3n71_A          309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN  388 (490)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence            4455566777889999999999999999872     3   346789999999999999999999999999863       


Q ss_pred             -CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           79 -HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        79 -p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                       |.-...+.++|.+|..+|++++|+..|++|+++.
T Consensus       389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~  423 (490)
T 3n71_A          389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL  423 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence             4446789999999999999999999999999874

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.05  E-value=2.2e-09  Score=85.66  Aligned_cols=97  Identities=18%  Similarity=0.144  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc----CHHHHHHHHHHHHhhcCcchhHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN----DWTKVEADCRKAIQLDHDSVKGHYL   87 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~al~l~p~~~~a~~~   87 (281)
                      ..+.++..+|..++..+++++|+.+|+++++.  .++.+++++|.+|.. +    ++++|+.++++|++  +.++.+++.
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~   90 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIV   90 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence            67889999999999999999999999999875  689999999999988 7    99999999999954  578999999


Q ss_pred             HHHHHHH----hcChHHHHHHHHHHHhhcc
Q 023501           88 LGQTLLQ----RNEYADGIKELEKALNLGR  113 (281)
Q Consensus        88 la~~~~~----~g~~~~A~~~~~kal~~~p  113 (281)
                      +|.+|..    .+++++|+.+|+++.+..+
T Consensus        91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  120 (212)
T 3rjv_A           91 LARVLVNRQAGATDVAHAITLLQDAARDSE  120 (212)
T ss_dssp             HHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence            9999998    8899999999999998854

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=99.02  E-value=8.3e-11  Score=100.71  Aligned_cols=49  Identities=20%  Similarity=0.295  Sum_probs=43.4

Q ss_pred             ccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCC
Q 023501          208 LCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQ  256 (281)
Q Consensus       208 ~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~  256 (281)
                      ..|+||.+.+.+||++||||+||..||..|+......||+||.++....
T Consensus       333 ~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~  381 (389)
T 2y1n_A          333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE  381 (389)
T ss_dssp             SBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred             CCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence            6899999999999999999999999999999844446999999987543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.01  E-value=1.3e-09  Score=90.40  Aligned_cols=137  Identities=9%  Similarity=-0.030  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc-c-hhHHHHHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD-S-VKGHYLLGQT   91 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-~-~~a~~~la~~   91 (281)
                      .+.....+..+...|+|++|...|..++...|++. ..+.+|.++++.++|++|+..++.++...+. . ..+++.+|.+
T Consensus       102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a  180 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA  180 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence            45566778999999999999999999999999988 9999999999999999999999988776432 2 4589999999


Q ss_pred             HHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501           92 LLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus        92 ~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      +..+|++++|+.+|++++... ..+..            .....+..+....+.++.+++...+++++...|.
T Consensus       181 l~~LG~~~eAl~~l~~a~~g~-~~P~~------------~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          181 AANLALFTEAERRLTEANDSP-AGEAC------------ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHHTST-TTTTT------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHCCCHHHHHHHHHHHhcCC-CCccc------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            999999999999999998542 10110            1223445555666778889999999999987654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.00  E-value=5.3e-09  Score=73.73  Aligned_cols=76  Identities=14%  Similarity=0.055  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLC-------PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHY   86 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~   86 (281)
                      +.....+|..++..|+|..|+..|.+|+...       +..+.++.++|.|++++|+++.|+..++++++++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            5677899999999999999999999999873       346789999999999999999999999999999999999877


Q ss_pred             HHH
Q 023501           87 LLG   89 (281)
Q Consensus        87 ~la   89 (281)
                      +++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            776

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.99  E-value=2.5e-10  Score=82.10  Aligned_cols=49  Identities=12%  Similarity=0.074  Sum_probs=40.8

Q ss_pred             CcccccCCcccccCce------------------ecCCCcccccchHHhHhcc----CCCCCCCCCCCcCC
Q 023501          206 DYLCCKITLDIFRDPV------------------ITPSGVTYERAVILDHLDK----VGKFDPITREPLRE  254 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv------------------~~~~g~~~~~~~i~~~~~~----~~~~cP~~~~~~~~  254 (281)
                      .+..|+||.+.|.+|+                  +++|||.||..||..|+..    ....||+||..+..
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            4568999999998876                  7899999999999999953    23369999998864

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.98  E-value=1.6e-10  Score=76.27  Aligned_cols=43  Identities=19%  Similarity=0.113  Sum_probs=39.1

Q ss_pred             cccccCCcccccCceecCCCcc-cccchHHhHhccCCCCCCCCCCCcCC
Q 023501          207 YLCCKITLDIFRDPVITPSGVT-YERAVILDHLDKVGKFDPITREPLRE  254 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~~~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~~~  254 (281)
                      .+.|+||.+.+.+||++||||+ ||..|+..|     ..||+||.++..
T Consensus        24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   67 (74)
T ss_dssp             HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred             CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence            4679999999999999999999 999999998     359999998874

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.95  E-value=4.5e-09  Score=72.75  Aligned_cols=64  Identities=11%  Similarity=0.212  Sum_probs=61.2

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh-HHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           52 TNRALCHLKRNDWTKVEADCRKAIQLDHDSVK-GHYLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        52 ~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~-a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      .++|.++...|++++|+..++++++++|.++. +++.+|.++..+|++++|+..|++++.++|+.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   68 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS   68 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            56899999999999999999999999999999 99999999999999999999999999998873

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.95  E-value=1.8e-08  Score=86.88  Aligned_cols=138  Identities=9%  Similarity=-0.032  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--------
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLD--------   78 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--------   78 (281)
                      .+..+..+|..++..|++++|+..+.+++...|..      ..++.++|.++...|++++|+..+++++.+.        
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  131 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL  131 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence            44567788888888888888888888888775532      2346778888888888888888888888775        


Q ss_pred             CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           79 HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAA  158 (281)
Q Consensus        79 p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (281)
                      |....++..+|.++...|++++|...+.+++.+.+...+..  ....         ....+......++..++...+.++
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~---------~~~la~~~~~~g~~~~A~~~l~~a  200 (373)
T 1hz4_A          132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ--QLQC---------LAMLIQCSLARGDLDNARSQLNRL  200 (373)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG--GHHH---------HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH--HHHH---------HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33456777888888888888888888888888876543321  1111         112222334456666666666666


Q ss_pred             HHH
Q 023501          159 LEE  161 (281)
Q Consensus       159 l~~  161 (281)
                      +..
T Consensus       201 ~~~  203 (373)
T 1hz4_A          201 ENL  203 (373)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.95  E-value=1e-08  Score=81.83  Aligned_cols=97  Identities=13%  Similarity=0.078  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcC--cc
Q 023501           12 KQAEQLRLDGNYYFSKD----RYGAAIDAYTEAITLCPNVPIYWTNRALCHLK----RNDWTKVEADCRKAIQLDH--DS   81 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p--~~   81 (281)
                      ..+.++..+|..+.. +    ++++|+.+|.++++  +.++.+++++|.+|..    .+++++|+.++++|++.+|  .+
T Consensus        48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  124 (212)
T 3rjv_A           48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA  124 (212)
T ss_dssp             TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH
T ss_pred             CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch
Confidence            567889999999988 7    99999999999965  5789999999999987    8899999999999999998  56


Q ss_pred             hhHHHHHHHHHHH----hcChHHHHHHHHHHHhh
Q 023501           82 VKGHYLLGQTLLQ----RNEYADGIKELEKALNL  111 (281)
Q Consensus        82 ~~a~~~la~~~~~----~g~~~~A~~~~~kal~~  111 (281)
                      +.+++.+|.+|..    .+++++|+.+|++++++
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            9999999999999    88999999999999988

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.94  E-value=3.1e-09  Score=90.86  Aligned_cols=113  Identities=9%  Similarity=-0.061  Sum_probs=105.7

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHH--------HHHHHH
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSK-D-RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWT--------KVEADC   71 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~--------~A~~~~   71 (281)
                      +++.++...|++..+|..++..+... + ++++++.++.++++.+|.+..+|..|+.+...+|.++        +++..+
T Consensus       111 ~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~  190 (349)
T 3q7a_A          111 LMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWC  190 (349)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Confidence            34566778899999999999999987 7 9999999999999999999999999999999999888        999999


Q ss_pred             HHHHhhcCcchhHHHHHHHHHHHhcC-------hHHHHHHHHHHHhhccC
Q 023501           72 RKAIQLDHDSVKGHYLLGQTLLQRNE-------YADGIKELEKALNLGRG  114 (281)
Q Consensus        72 ~~al~l~p~~~~a~~~la~~~~~~g~-------~~~A~~~~~kal~~~p~  114 (281)
                      +++++.+|.|..||..++.++..+++       ++++++.+.+++.++|+
T Consensus       191 ~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~  240 (349)
T 3q7a_A          191 NEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH  240 (349)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999987       79999999999999887

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.89  E-value=2.9e-10  Score=84.02  Aligned_cols=55  Identities=20%  Similarity=0.353  Sum_probs=49.4

Q ss_pred             CCcccccCCcccccCc-------eecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCccc
Q 023501          205 PDYLCCKITLDIFRDP-------VITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPN  260 (281)
Q Consensus       205 p~~~~c~i~~~~~~~p-------v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n  260 (281)
                      ++.+.|+||.+.+.+|       ++++|||+||..||.+|+..+. .||+||.++...++.|+
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~~  131 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYHPI  131 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCS-BCTTTCCBCCGGGEEEE
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCC-CCCCCCCcCChhcceee
Confidence            4678899999999987       8899999999999999998777 59999999998887775

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.88  E-value=1.4e-08  Score=75.80  Aligned_cols=86  Identities=10%  Similarity=0.026  Sum_probs=78.7

Q ss_pred             CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhc-C-cchhHHHHHHHHHHHhcChHHHHH
Q 023501           29 RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN---DWTKVEADCRKAIQLD-H-DSVKGHYLLGQTLLQRNEYADGIK  103 (281)
Q Consensus        29 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~-p-~~~~a~~~la~~~~~~g~~~~A~~  103 (281)
                      ....+...|.+.+..++.+..+.+++|.|+.+.+   +.++++..++.+++.+ | .+.+++|.+|..++.+|+|++|..
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            3456778888888888999999999999999988   7789999999999999 7 679999999999999999999999


Q ss_pred             HHHHHHhhccC
Q 023501          104 ELEKALNLGRG  114 (281)
Q Consensus       104 ~~~kal~~~p~  114 (281)
                      ++++++++.|+
T Consensus        93 y~~~lL~ieP~  103 (152)
T 1pc2_A           93 YVRGLLQTEPQ  103 (152)
T ss_dssp             HHHHHHHHCTT
T ss_pred             HHHHHHhcCCC
Confidence            99999999887

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.87  E-value=9.3e-08  Score=82.34  Aligned_cols=143  Identities=12%  Similarity=-0.031  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch---
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP-----IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV---   82 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---   82 (281)
                      .-.++.+..+|..++..|++++|+..+.+++...|.+.     .++.++|.++...|++++|...+++++.+.|...   
T Consensus        11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   90 (373)
T 1hz4_A           11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH   90 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH
Confidence            44577888999999999999999999999999887643     3688999999999999999999999999876543   


Q ss_pred             ---hHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           83 ---KGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKG-YIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAA  158 (281)
Q Consensus        83 ---~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (281)
                         .++..+|.++...|++++|+..+++++.+.+..+... .........         .+......+++.++...+.++
T Consensus        91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~---------la~~~~~~g~~~~A~~~~~~a  161 (373)
T 1hz4_A           91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI---------RAQLLWAWARLDEAEASARSG  161 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHH---------HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHH---------HHHHHHHhcCHHHHHHHHHHH
Confidence               3478899999999999999999999999875432210 011111111         222233446677777777777


Q ss_pred             HHHh
Q 023501          159 LEEK  162 (281)
Q Consensus       159 l~~~  162 (281)
                      +...
T Consensus       162 l~~~  165 (373)
T 1hz4_A          162 IEVL  165 (373)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            7654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.87  E-value=2.7e-08  Score=73.82  Aligned_cols=88  Identities=19%  Similarity=0.076  Sum_probs=82.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH-
Q 023501           20 DGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLK----RNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ-   94 (281)
Q Consensus        20 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~-   94 (281)
                      +|..+...+.+++|+.+|++|.+.  .++.+++++|.+|..    .+++++|+.++++|.+.  .++.+++.+|.+|.. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence            888898989999999999999987  789999999999998    88999999999999987  679999999999999 


Q ss_pred             ---hcChHHHHHHHHHHHhh
Q 023501           95 ---RNEYADGIKELEKALNL  111 (281)
Q Consensus        95 ---~g~~~~A~~~~~kal~~  111 (281)
                         .+++++|+.+|+++.+.
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT
T ss_pred             CCCCcCHHHHHHHHHHHHHC
Confidence               89999999999999988

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.87  E-value=1.2e-08  Score=90.14  Aligned_cols=96  Identities=14%  Similarity=0.018  Sum_probs=81.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--------Cc
Q 023501           17 LRLDGNYYFSKDRYGAAIDAYTEAITL-----CPN---VPIYWTNRALCHLKRNDWTKVEADCRKAIQLD--------HD   80 (281)
Q Consensus        17 ~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--------p~   80 (281)
                      ....+......|+|++|+..|.+++++     .|+   -+..+.++|.+|..+|+|++|+..+++++.+-        |+
T Consensus       301 ~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~  380 (433)
T 3qww_A          301 VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN  380 (433)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred             HHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence            334445555678999999999999986     344   35789999999999999999999999999863        44


Q ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                      -+..++++|.+|..+|++++|+..|++|+++.
T Consensus       381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          381 VASMWLKLGRLYMGLENKAAGEKALKKAIAIM  412 (433)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999884

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=9.6e-10  Score=72.67  Aligned_cols=43  Identities=19%  Similarity=0.110  Sum_probs=37.7

Q ss_pred             cccccCCcccccCceecCCCcc-cccchHHhHhccCCCCCCCCCCCcCC
Q 023501          207 YLCCKITLDIFRDPVITPSGVT-YERAVILDHLDKVGKFDPITREPLRE  254 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~~~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~~~  254 (281)
                      .+.|+||.+.+.+||++||||+ ||..|+...    . .||+||.++..
T Consensus        25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~-~CP~Cr~~i~~   68 (75)
T 2ecg_A           25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----D-KCPMCYTVITF   68 (75)
T ss_dssp             HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----S-BCTTTCCBCCC
T ss_pred             CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----C-CCccCCceecC
Confidence            4569999999999999999999 999999643    3 59999999875

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.86  E-value=2.9e-08  Score=87.78  Aligned_cols=100  Identities=6%  Similarity=-0.048  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc------
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLC-----PN---VPIYWTNRALCHLKRNDWTKVEADCRKAIQLD------   78 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~------   78 (281)
                      .+.........+..+|+|++|+..|.++++..     |+   -...+.++|.+|..+|+|++|+..+++++.+-      
T Consensus       286 ~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~  365 (429)
T 3qwp_A          286 EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG  365 (429)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence            34555566677889999999999999999762     33   35789999999999999999999999999763      


Q ss_pred             --CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           79 --HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        79 --p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                        |.-...++++|.+|..+|++++|+..|++|+++-
T Consensus       366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~  401 (429)
T 3qwp_A          366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM  401 (429)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence              3446689999999999999999999999999874

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.84  E-value=1.8e-08  Score=69.41  Aligned_cols=74  Identities=12%  Similarity=0.026  Sum_probs=68.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh
Q 023501           10 VAKQAEQLRLDGNYYFSKDR---YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK   83 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~   83 (281)
                      +|+++..+..+|..++..++   ..+|..++.+|+..+|+++.++..+|..+++.|+|++|+..++++++.+|..+.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            46778999999999987666   799999999999999999999999999999999999999999999999998443

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.80  E-value=8.3e-10  Score=76.41  Aligned_cols=65  Identities=14%  Similarity=0.187  Sum_probs=47.0

Q ss_pred             CcccccCCcccccCceec---CCCcccccchHHhHhcc----C---CCCCCC--CCCC--cCCCCCcccHHHHHHHHHHH
Q 023501          206 DYLCCKITLDIFRDPVIT---PSGVTYERAVILDHLDK----V---GKFDPI--TREP--LRESQLVPNLAIKEAVRAYM  271 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv~~---~~g~~~~~~~i~~~~~~----~---~~~cP~--~~~~--~~~~~~~~n~~l~~~i~~~~  271 (281)
                      ..+.|+||.+.+.+|+++   +|||+||+.||.++|..    +   ...||.  |+..  ++... +.+....+.++.|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~-i~~ll~~~~~~ky~   82 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENE-IECMVAAEIMQRYK   82 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHH-HHHHSCHHHHHHHH
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHH-HHHHCCHHHHHHHH
Confidence            467899999999999864   79999999999999864    1   225999  9988  66432 22332344555554

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=2.1e-09  Score=72.15  Aligned_cols=49  Identities=10%  Similarity=0.118  Sum_probs=40.3

Q ss_pred             CcccccCCcccccC--------------cee-cCCCcccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501          206 DYLCCKITLDIFRD--------------PVI-TPSGVTYERAVILDHLDKVGKFDPITREPLRES  255 (281)
Q Consensus       206 ~~~~c~i~~~~~~~--------------pv~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~  255 (281)
                      .+-.|+||.+.|.+              +++ ++|||.|++.||.+|+..+. +||+||.++...
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~~~~~   77 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN-RCPLCQQDWVVQ   77 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC-BCTTTCCBCCEE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC-CCCCcCCCcchh
Confidence            35569999999877              444 45999999999999999776 599999987643

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.77  E-value=3.7e-08  Score=88.45  Aligned_cols=104  Identities=9%  Similarity=-0.079  Sum_probs=91.1

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD--   78 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--   78 (281)
                      ..|..+..+.++|..|..+|+|++|+.+|.+++++        .|+-+..+.|+|.+|..+|+|++|+..+++|+++-  
T Consensus       346 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~  425 (490)
T 3n71_A          346 TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLV  425 (490)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999977        23456789999999999999999999999999863  


Q ss_pred             ---Ccc---hhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           79 ---HDS---VKGHYLLGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        79 ---p~~---~~a~~~la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                         |++   .+....++.++..++.+++|...|.++.+-.
T Consensus       426 ~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          426 THGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               554   5566789999999999999999999987653

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.73  E-value=3.9e-09  Score=67.32  Aligned_cols=47  Identities=15%  Similarity=0.125  Sum_probs=41.8

Q ss_pred             CcccccCCcccccCceec--CCCcc-cccchHHhHhccCCCCCCCCCCCcC
Q 023501          206 DYLCCKITLDIFRDPVIT--PSGVT-YERAVILDHLDKVGKFDPITREPLR  253 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv~~--~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~~  253 (281)
                      ++..|+||.+-..++|++  ||||. +|..|+..|+..+. .||+||.++.
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNK-PCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTC-CCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCC-cCCCcCcchh
Confidence            456799999999999987  99999 89999999998666 5999999886

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.72  E-value=1.5e-07  Score=77.59  Aligned_cols=107  Identities=16%  Similarity=0.095  Sum_probs=92.9

Q ss_pred             chHHHHHHHHHHHHHHHh-----cCCH------HHHHHHHHHHHHhCCC--chHHHHHHHHHHHHh-----cCHHHHHHH
Q 023501            9 GVAKQAEQLRLDGNYYFS-----KDRY------GAAIDAYTEAITLCPN--VPIYWTNRALCHLKR-----NDWTKVEAD   70 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~-----~~~~------~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~-----~~~~~A~~~   70 (281)
                      ..++.++.++..|.....     .+++      ..|...+++|++++|+  +..+|..+|..|.+.     |+.++|...
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            356677777777766633     2443      6899999999999999  788999999999995     999999999


Q ss_pred             HHHHHhhcCcc-hhHHHHHHHHHHH-hcChHHHHHHHHHHHhhccCC
Q 023501           71 CRKAIQLDHDS-VKGHYLLGQTLLQ-RNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        71 ~~~al~l~p~~-~~a~~~la~~~~~-~g~~~~A~~~~~kal~~~p~~  115 (281)
                      +++|++++|+. +..++.+|..+.. .|++++|...+++++...|..
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            99999999975 9999999999988 499999999999999998874

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.70  E-value=5.1e-09  Score=66.53  Aligned_cols=48  Identities=15%  Similarity=0.004  Sum_probs=41.7

Q ss_pred             CcccccCCcccccCceec--CCCcc-cccchHHhHhccCCCCCCCCCCCcCC
Q 023501          206 DYLCCKITLDIFRDPVIT--PSGVT-YERAVILDHLDKVGKFDPITREPLRE  254 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv~~--~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~~~  254 (281)
                      ....|+||.+-..+++++  ||||. ||..|+..++..+. .||+||+++..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CPiCR~~i~~   56 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGA-SCPICKKEIQL   56 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTC-BCTTTCCBCCE
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCC-cCCCcCchhhc
Confidence            345799999999999987  99998 99999999987665 59999998863

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.69  E-value=1e-07  Score=81.50  Aligned_cols=112  Identities=14%  Similarity=0.111  Sum_probs=91.6

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCH-------HHHHH-HHH--HHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHH
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRY-------GAAID-AYT--EAITLCPNVPIYWTNRALCHLKRNDWTKVEADC   71 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~-------~~A~~-~~~--~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~   71 (281)
                      ++++++..+|+.+.++..++..+.....+       ..++. .+.  .++..+|.++.+|..+|..+...|++++|+..+
T Consensus       221 l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l  300 (372)
T 3ly7_A          221 LLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAI  300 (372)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            67889999999999998888877532111       11111 121  234667999999999999999999999999999


Q ss_pred             HHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           72 RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        72 ~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ++|+.++|. ..+|..+|.++...|++++|++.|.+|+.++|.
T Consensus       301 ~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~  342 (372)
T 3ly7_A          301 NTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG  342 (372)
T ss_dssp             HHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred             HHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            999999975 678899999999999999999999999999887

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.68  E-value=6.8e-08  Score=72.11  Aligned_cols=82  Identities=10%  Similarity=-0.040  Sum_probs=73.1

Q ss_pred             hHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhC-C-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501           10 VAKQAEQLRLDGNYYFSKD---RYGAAIDAYTEAITLC-P-NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG   84 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (281)
                      ++...+..++.|..+.+.+   ++++++..++..++.+ | .+..+++++|..|+++|+|++|.++++++++++|+|..+
T Consensus        28 ~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA  107 (152)
T 1pc2_A           28 GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA  107 (152)
T ss_dssp             TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            3456789999999999988   7789999999999998 7 568999999999999999999999999999999999988


Q ss_pred             HHHHHHH
Q 023501           85 HYLLGQT   91 (281)
Q Consensus        85 ~~~la~~   91 (281)
                      ...+-.+
T Consensus       108 ~~Lk~~i  114 (152)
T 1pc2_A          108 KELERLI  114 (152)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7655443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.68  E-value=6.6e-07  Score=75.09  Aligned_cols=132  Identities=10%  Similarity=-0.046  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc----chhHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCP--NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD----SVKGHYL   87 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~a~~~   87 (281)
                      ...+..+|.++...|++++|+..+.+++..+|  ++..++..++.+++++|+.+.|.+.+++..+.+|+    +-.....
T Consensus       100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~  179 (310)
T 3mv2_B          100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN  179 (310)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence            44556899999999999999999999999987  88999999999999999999999999999999993    2334455


Q ss_pred             HHHH--HHHhc--ChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023501           88 LGQT--LLQRN--EYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEK  162 (281)
Q Consensus        88 la~~--~~~~g--~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (281)
                      ++.+  .+..|  ++.+|...|+++....|+       .......+.          ...+.+++.++...++.+++..
T Consensus       180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-------~~~~~lLln----------~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          180 LAESYIKFATNKETATSNFYYYEELSQTFPT-------WKTQLGLLN----------LHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-------HHHHHHHHH----------HHHHHTCHHHHHHHHHHHHSHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-------cccHHHHHH----------HHHHcCCHHHHHHHHHHHHHhc
Confidence            5444  66667  999999999998776543       101111111          3556677788888777665543

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.67  E-value=7.3e-09  Score=88.20  Aligned_cols=44  Identities=20%  Similarity=0.230  Sum_probs=39.8

Q ss_pred             CcccccCCcccccCceecCCCcc-cccchHHhHhccCCCCCCCCCCCcCC
Q 023501          206 DYLCCKITLDIFRDPVITPSGVT-YERAVILDHLDKVGKFDPITREPLRE  254 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv~~~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~~~  254 (281)
                      ..+.|+||.+.+.+||++||||+ ||+.|+..|    . .||+||.++..
T Consensus       294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~-~CP~CR~~i~~  338 (345)
T 3t6p_A          294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----R-KCPICRGIIKG  338 (345)
T ss_dssp             TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----S-BCTTTCCBCCE
T ss_pred             CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----C-cCCCCCCCccC
Confidence            35789999999999999999999 999999988    3 59999999874

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.66  E-value=6.9e-09  Score=69.07  Aligned_cols=43  Identities=14%  Similarity=0.204  Sum_probs=38.5

Q ss_pred             cccccCCcccccCceecCCCcc-cccchHHhHhccCCCCCCCCCCCcCC
Q 023501          207 YLCCKITLDIFRDPVITPSGVT-YERAVILDHLDKVGKFDPITREPLRE  254 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~~~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~~~  254 (281)
                      ...|+||.+.+.+||++||||. ||..|+..+.     .||+||.++..
T Consensus        18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~   61 (79)
T 2yho_A           18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH   61 (79)
T ss_dssp             HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred             CCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence            4569999999999999999999 9999999874     59999999874

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.63  E-value=1.7e-08  Score=70.91  Aligned_cols=46  Identities=13%  Similarity=0.095  Sum_probs=39.3

Q ss_pred             cccccCCcccccCc------------------eecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501          207 YLCCKITLDIFRDP------------------VITPSGVTYERAVILDHLDKVGKFDPITREPLR  253 (281)
Q Consensus       207 ~~~c~i~~~~~~~p------------------v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~  253 (281)
                      +-.|+||.+.|.+|                  ++++|||.|+..||..|+..+. +||+||.++.
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~Cr~~~~  100 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWE  100 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS-BCSSSCSBCC
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCC-cCcCCCCcce
Confidence            45699999998876                  3489999999999999998766 5999999865

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.62  E-value=7.4e-07  Score=79.91  Aligned_cols=97  Identities=16%  Similarity=0.103  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCcch
Q 023501           11 AKQAEQLRLDGNYYFS----KDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLK----RNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      ...+..+..+|..++.    .+++++|+.+|+++++.  +++.+++.+|.+|..    .+++++|+..++++++.  .++
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~  111 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP  111 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred             CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence            3467889999999998    89999999999999886  678999999999999    89999999999999876  478


Q ss_pred             hHHHHHHHHHHH----hcChHHHHHHHHHHHhh
Q 023501           83 KGHYLLGQTLLQ----RNEYADGIKELEKALNL  111 (281)
Q Consensus        83 ~a~~~la~~~~~----~g~~~~A~~~~~kal~~  111 (281)
                      .+++.+|.+|..    .+++++|+.+|+++.+.
T Consensus       112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  144 (490)
T 2xm6_A          112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ  144 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            999999999998    88999999999999876

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.61  E-value=5.3e-08  Score=62.74  Aligned_cols=45  Identities=16%  Similarity=0.118  Sum_probs=39.2

Q ss_pred             CCcccccCCcccccCceecCCCcc-cccchHHhHhccCCCCCCCCCCCcCC
Q 023501          205 PDYLCCKITLDIFRDPVITPSGVT-YERAVILDHLDKVGKFDPITREPLRE  254 (281)
Q Consensus       205 p~~~~c~i~~~~~~~pv~~~~g~~-~~~~~i~~~~~~~~~~cP~~~~~~~~  254 (281)
                      .+...|+||.+...+||++||||. ||..|+...    . .||+||.++..
T Consensus        13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~-~CP~CR~~i~~   58 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----Q-QCPMCRQFVQE   58 (68)
T ss_dssp             CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----S-SCTTTCCCCCC
T ss_pred             CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----C-CCCCCCcchhc
Confidence            356789999999999999999999 999999842    3 59999999874

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.61  E-value=2.4e-07  Score=82.54  Aligned_cols=95  Identities=11%  Similarity=-0.053  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh----cCHHHHHHHHHHHHhhcCcchhHHH
Q 023501           14 AEQLRLDGNYYFSKD---RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKR----NDWTKVEADCRKAIQLDHDSVKGHY   86 (281)
Q Consensus        14 a~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~l~p~~~~a~~   86 (281)
                      +..+..+|..+...|   ++++|+.+|.++++..|.++..++++|.+|...    +++++|+..++++.   |.++.+++
T Consensus       176 ~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~  252 (452)
T 3e4b_A          176 DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWV  252 (452)
T ss_dssp             TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHH
T ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHH
Confidence            337788888888888   888999999999998888888888888888766    68889999988887   88888888


Q ss_pred             HHHHH-H--HHhcChHHHHHHHHHHHhh
Q 023501           87 LLGQT-L--LQRNEYADGIKELEKALNL  111 (281)
Q Consensus        87 ~la~~-~--~~~g~~~~A~~~~~kal~~  111 (281)
                      .+|.+ +  ...+++++|+.+|+++.+.
T Consensus       253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~  280 (452)
T 3e4b_A          253 SLAQLLYDFPELGDVEQMMKYLDNGRAA  280 (452)
T ss_dssp             HHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence            88888 4  4678888888888888866

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.59  E-value=3.6e-07  Score=64.13  Aligned_cols=68  Identities=15%  Similarity=0.067  Sum_probs=61.8

Q ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-------CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-------HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ++.-++.+|..++..|+|..|+.++++|++..       +.....+..+|.++..+|+++.|+..+++++++.|+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~   78 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE   78 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence            45667889999999999999999999999874       356789999999999999999999999999999887

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.59  E-value=6.1e-07  Score=80.47  Aligned_cols=95  Identities=18%  Similarity=0.137  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhcCcchhH
Q 023501           13 QAEQLRLDGNYYFSK-----DRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN---DWTKVEADCRKAIQLDHDSVKG   84 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~~~a   84 (281)
                      .+..+..+|..+...     +++++|+.+|.++++.  .++.+++++|.+|...|   ++++|+..+++|++.  .++.+
T Consensus       290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a  365 (490)
T 2xm6_A          290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAA  365 (490)
T ss_dssp             CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHH
Confidence            455666666666665     6666666666666654  34556666666666544   566666666666665  45666


Q ss_pred             HHHHHHHHHH----hcChHHHHHHHHHHHhh
Q 023501           85 HYLLGQTLLQ----RNEYADGIKELEKALNL  111 (281)
Q Consensus        85 ~~~la~~~~~----~g~~~~A~~~~~kal~~  111 (281)
                      ++.+|.+|..    .+++++|+.+|+++.+.
T Consensus       366 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~  396 (490)
T 2xm6_A          366 QFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ  396 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence            6666666666    56666666666666655

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.56  E-value=1.5e-06  Score=74.44  Aligned_cols=135  Identities=8%  Similarity=0.008  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCH-------HHHHHH-HH--HHHhhcC
Q 023501           13 QAEQLRLDGNYYFSKDR---YGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDW-------TKVEAD-CR--KAIQLDH   79 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~-------~~A~~~-~~--~al~l~p   79 (281)
                      .|-.++.+|..++..++   +.+|+.+|++|++++|+.+.+|..++.||.....+       ..++.. +.  .++.++|
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~  274 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN  274 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence            35566778888887654   47899999999999999999999999999643221       111111 11  2346779


Q ss_pred             cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           80 DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAAL  159 (281)
Q Consensus        80 ~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (281)
                      ..+.++..+|.++...|++++|+..+++++.++|+  .      ...         ...+....-.|+..++...+.+++
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s--~------~a~---------~llG~~~~~~G~~~eA~e~~~~Al  337 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS--W------LNY---------VLLGKVYEMKGMNREAADAYLTAF  337 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--H------HHH---------HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--H------HHH---------HHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999653  1      111         222233344577888888888888


Q ss_pred             HHhhh
Q 023501          160 EEKHV  164 (281)
Q Consensus       160 ~~~~~  164 (281)
                      ..+|.
T Consensus       338 rL~P~  342 (372)
T 3ly7_A          338 NLRPG  342 (372)
T ss_dssp             HHSCS
T ss_pred             hcCCC
Confidence            87664

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.52  E-value=1.8e-06  Score=84.92  Aligned_cols=92  Identities=12%  Similarity=0.128  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc-----------
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD-----------   80 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-----------   80 (281)
                      +...+|..+|..+...|++++|+..|.+|     +++..|...|.++.++|+|++|++++..|.+.+++           
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence            45778889999999999999999999775     77888888999999999999999998887765532           


Q ss_pred             ----------------chhHHHHHHHHHHHhcChHHHHHHHHHH
Q 023501           81 ----------------SVKGHYLLGQTLLQRNEYADGIKELEKA  108 (281)
Q Consensus        81 ----------------~~~a~~~la~~~~~~g~~~~A~~~~~ka  108 (281)
                                      +...++.+|..+...|+|++|...|.++
T Consensus      1178 AKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A         1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred             HhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence                            2234455566666666666665555554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.49  E-value=5e-07  Score=80.42  Aligned_cols=94  Identities=15%  Similarity=0.123  Sum_probs=52.5

Q ss_pred             hHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCchHHHHHHHHH-H--HHhcCHHHHHHHHHHHHhhcCcch
Q 023501           10 VAKQAEQLRLDGNYYFSK----DRYGAAIDAYTEAITLCPNVPIYWTNRALC-H--LKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~~a~~-~--~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      .+..+..+..+|..+...    +++++|+.+|.++.   |+++.+++++|.+ +  ...+++++|+.+++++++.+  ++
T Consensus       209 g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~  283 (452)
T 3e4b_A          209 GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QP  283 (452)
T ss_dssp             TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CH
Confidence            333444445555555443    46666666666655   5566666666665 2  34556666666666655433  55


Q ss_pred             hHHHHHHHHHHHhc-----ChHHHHHHHHHHH
Q 023501           83 KGHYLLGQTLLQRN-----EYADGIKELEKAL  109 (281)
Q Consensus        83 ~a~~~la~~~~~~g-----~~~~A~~~~~kal  109 (281)
                      .+++.+|.+|. .|     ++++|+.+|+++.
T Consensus       284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence            56666666555 44     5666666665555

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.48  E-value=2.4e-06  Score=74.80  Aligned_cols=141  Identities=14%  Similarity=0.090  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC-----
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDH-----   79 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p-----   79 (281)
                      .....++..+|..|+..|+|++|+.+|.+++...+..      ..++.+++.++...|+++.|+..+++++...+     
T Consensus        52 ~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  131 (434)
T 4b4t_Q           52 NEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV  131 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence            3455678999999999999999999999998876543      24667788888889999999999999988653     


Q ss_pred             -cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           80 -DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAA  158 (281)
Q Consensus        80 -~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (281)
                       .....+..+|.++...|+|++|+..+.+++.......+.. ....+         ....++.....+++..+...+.++
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~~~~A~~~~~~a  201 (434)
T 4b4t_Q          132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP-SLVDV---------HLLESKVYHKLRNLAKSKASLTAA  201 (434)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST-HHHHH---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch-hHHHH---------HHHHHHHHHHhCcHHHHHHHHHHH
Confidence             3467899999999999999999999999998765543331 12122         222233333445566666666665


Q ss_pred             HHH
Q 023501          159 LEE  161 (281)
Q Consensus       159 l~~  161 (281)
                      +..
T Consensus       202 l~~  204 (434)
T 4b4t_Q          202 RTA  204 (434)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.44  E-value=3.1e-06  Score=74.05  Aligned_cols=104  Identities=13%  Similarity=0.024  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh------cCcc
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCP------NVPIYWTNRALCHLKRNDWTKVEADCRKAIQL------DHDS   81 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~~   81 (281)
                      +.+...+|..+...|+++.|+.+|.+++...+      ..+.++.++|.+|...|+|++|+..+.+++..      .+..
T Consensus        95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~  174 (434)
T 4b4t_Q           95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSL  174 (434)
T ss_dssp             HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhH
Confidence            34566778888889999999999999987633      34789999999999999999999999999876      3455


Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      ..++..+|.++..+|++++|...+.+++.+.+....
T Consensus       175 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  210 (434)
T 4b4t_Q          175 VDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC  210 (434)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC
Confidence            789999999999999999999999999998765443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.43  E-value=1.8e-06  Score=63.85  Aligned_cols=78  Identities=22%  Similarity=0.184  Sum_probs=70.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH----hcChHHHHH
Q 023501           28 DRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ----RNEYADGIK  103 (281)
Q Consensus        28 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~----~g~~~~A~~  103 (281)
                      +++++|+.+|.++.+.....+.    +|.+|...+.+++|+.++++|.+.  .++.+++.+|.+|..    .+++++|+.
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            5789999999999998754444    999999999999999999999988  689999999999999    899999999


Q ss_pred             HHHHHHhh
Q 023501          104 ELEKALNL  111 (281)
Q Consensus       104 ~~~kal~~  111 (281)
                      +|+++.+.
T Consensus        83 ~~~~Aa~~   90 (138)
T 1klx_A           83 YYSKACGL   90 (138)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHcC
Confidence            99999887

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.38  E-value=3.1e-07  Score=80.60  Aligned_cols=79  Identities=14%  Similarity=0.125  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ   94 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~   94 (281)
                      ..+...|+.++..|+|++|+.+|+++        ..|..+|.|+.++|+|++|++.+++|     .++++|...+.++..
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD  189 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence            48889999999999999999999976        46888999999999999999999998     367777777777777


Q ss_pred             hcChHHHHHHHH
Q 023501           95 RNEYADGIKELE  106 (281)
Q Consensus        95 ~g~~~~A~~~~~  106 (281)
                      .|+|+.|..+..
T Consensus       190 ~~ef~lA~~~~l  201 (449)
T 1b89_A          190 GKEFRLAQMCGL  201 (449)
T ss_dssp             TTCHHHHHHTTT
T ss_pred             cCcHHHHHHHHH
Confidence            777777755544

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.38  E-value=4.1e-08  Score=70.01  Aligned_cols=46  Identities=15%  Similarity=0.106  Sum_probs=0.0

Q ss_pred             ccccCCcccccCc-----------------ee-cCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501          208 LCCKITLDIFRDP-----------------VI-TPSGVTYERAVILDHLDKVGKFDPITREPLRE  254 (281)
Q Consensus       208 ~~c~i~~~~~~~p-----------------v~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~  254 (281)
                      -.|+||.+.|.+|                 |+ ++|||.|+..||.+|+..+. +||+||.++..
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~~~~  112 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWEF  112 (117)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC-cCCCCCCeeee
Confidence            4699999988774                 32 58999999999999998866 59999998653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.38  E-value=2.3e-06  Score=71.78  Aligned_cols=97  Identities=10%  Similarity=-0.021  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHhcCHHHHHHHHHHHHhh----------c
Q 023501           13 QAEQLRLDGNYYFSKD--RYGAAIDAYTEAITLCPN--VPIYWTNRALCHLKRNDWTKVEADCRKAIQL----------D   78 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l----------~   78 (281)
                      ........|.+.+..|  ++++|...|+++.+..|+  .+..+.+   ++.++|+|++|...++.++++          +
T Consensus       175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~  251 (310)
T 3mv2_B          175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAV  251 (310)
T ss_dssp             HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCC
Confidence            3344444565566666  999999999999888887  3445555   899999999999999988887          5


Q ss_pred             CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           79 HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        79 p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      |+++.++.++..+...+|+  +|..++.++.+..|+
T Consensus       252 p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~  285 (310)
T 3mv2_B          252 LYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE  285 (310)
T ss_dssp             SSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence            8899999999999999998  899999999999887

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.37  E-value=5.5e-07  Score=59.76  Aligned_cols=50  Identities=14%  Similarity=0.149  Sum_probs=41.3

Q ss_pred             CcccccCCcccc--cCceecCCC-----cccccchHHhHhccCC-CCCCCCCCCcCCC
Q 023501          206 DYLCCKITLDIF--RDPVITPSG-----VTYERAVILDHLDKVG-KFDPITREPLRES  255 (281)
Q Consensus       206 ~~~~c~i~~~~~--~~pv~~~~g-----~~~~~~~i~~~~~~~~-~~cP~~~~~~~~~  255 (281)
                      ..-.|.||.+-+  .+|+++||+     |.|-..||.+|+..+. ..||+|+.++...
T Consensus        14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME   71 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred             CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence            456799999766  468999996     9999999999998654 3699999998754

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.29  E-value=1.4e-05  Score=65.81  Aligned_cols=139  Identities=10%  Similarity=-0.070  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHHh------cCCHHHHHHH-----HHHH-HHhCCCchHHHHHHHHHHHH---h--c------CHHHH
Q 023501           11 AKQAEQLRLDGNYYFS------KDRYGAAIDA-----YTEA-ITLCPNVPIYWTNRALCHLK---R--N------DWTKV   67 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~------~~~~~~A~~~-----~~~a-l~~~p~~~~~~~~~a~~~~~---~--~------~~~~A   67 (281)
                      +..|..++.+|..|-.      ...|.+++..     +..+ -..+|+++..++..|..+..   .  |      ....|
T Consensus       103 ~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A  182 (301)
T 3u64_A          103 YSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAA  182 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHH
Confidence            4456666666555522      2344434332     2222 34467788888888877644   2  2      26889


Q ss_pred             HHHHHHHHhhcCc--chhHHHHHHHHHHHh-----cChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 023501           68 EADCRKAIQLDHD--SVKGHYLLGQTLLQR-----NEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQE  140 (281)
Q Consensus        68 ~~~~~~al~l~p~--~~~a~~~la~~~~~~-----g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~  140 (281)
                      ...+++|+++||+  +..+|..+|..|...     |+.++|..+|+++++++|+....               .....+.
T Consensus       183 ~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id---------------~~v~YA~  247 (301)
T 3u64_A          183 VMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPD---------------HHITYAD  247 (301)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSH---------------HHHHHHH
T ss_pred             HHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCch---------------HHHHHHH
Confidence            9999999999999  677999999999995     99999999999999998863221               2222233


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHhhh
Q 023501          141 SSKR-SWELQSLKEACEAALEEKHV  164 (281)
Q Consensus       141 ~~~~-~~~~~~~~~~~~~~l~~~~~  164 (281)
                      ...+ .++...+...+++++...+.
T Consensus       248 ~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          248 ALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            3323 35667778888898886554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.29  E-value=6.8e-06  Score=59.09  Aligned_cols=90  Identities=9%  Similarity=-0.010  Sum_probs=77.7

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHH---HHHHHHHHHhhc-C-cchhHHHHHHHHHHHhcChHH
Q 023501           26 SKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTK---VEADCRKAIQLD-H-DSVKGHYLLGQTLLQRNEYAD  100 (281)
Q Consensus        26 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~---A~~~~~~al~l~-p-~~~~a~~~la~~~~~~g~~~~  100 (281)
                      .......+...|.+.+..++....+-+++|.++...++...   ++..++..++.+ | ..-+.+|.+|..++.+|+|++
T Consensus        13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~   92 (126)
T 1nzn_A           13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence            33455667788888888888889999999999998887655   999999999988 6 678899999999999999999


Q ss_pred             HHHHHHHHHhhccCC
Q 023501          101 GIKELEKALNLGRGA  115 (281)
Q Consensus       101 A~~~~~kal~~~p~~  115 (281)
                      |..+++..|+..|++
T Consensus        93 A~~~~~~lL~~eP~n  107 (126)
T 1nzn_A           93 ALKYVRGLLQTEPQN  107 (126)
T ss_dssp             HHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999999999998874

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.22  E-value=2e-05  Score=77.62  Aligned_cols=92  Identities=20%  Similarity=0.189  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC---------------
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH---------------   79 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p---------------   79 (281)
                      ..+...|+.++..|+|++|+.+|++|        ..|..+|.+|.++|++++|++.+++|...++               
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHH
Confidence            45667999999999999999999996        4799999999999999999999999955443               


Q ss_pred             ----------cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           80 ----------DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        80 ----------~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                                .+++.+..++..|...|.|++|+..+++++.+++.
T Consensus      1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera 1312 (1630)
T 1xi4_A         1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA 1312 (1630)
T ss_pred             HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh
Confidence                      14445667777888999999999999999999654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.17  E-value=6.3e-06  Score=72.80  Aligned_cols=86  Identities=12%  Similarity=-0.019  Sum_probs=70.5

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh---
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL---   77 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l---   77 (281)
                      ..+..+..+.++|.+|..+|+|++|+.+|.+++.+        .|.-+..++++|.+|..+|++++|+..+++|+++   
T Consensus       324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~  403 (429)
T 3qwp_A          324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV  403 (429)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            46778899999999999999999999999999977        2335678999999999999999999999999886   


Q ss_pred             --cCcchh---HHHHHHHHHHH
Q 023501           78 --DHDSVK---GHYLLGQTLLQ   94 (281)
Q Consensus        78 --~p~~~~---a~~~la~~~~~   94 (281)
                        .|+++.   .+..++.+...
T Consensus       404 ~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          404 THGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             HTCTTSHHHHHHHHHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHHHH
Confidence              355543   44445555443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.16  E-value=1.8e-05  Score=59.43  Aligned_cols=96  Identities=11%  Similarity=0.020  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc---C
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---------PIYWTNRALCHLKRNDWTKVEADCRKAIQLD---H   79 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---p   79 (281)
                      .....+.+....++..|.|+.|+-....++.+..++         +.++..+|.+++..++|..|...|++|+++.   +
T Consensus        18 ~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~   97 (167)
T 3ffl_A           18 GSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS   97 (167)
T ss_dssp             ---CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred             ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence            345568888999999999999999999977764333         3488899999999999999999999997653   1


Q ss_pred             cc----------------------hhHHHHHHHHHHHhcChHHHHHHHHH
Q 023501           80 DS----------------------VKGHYLLGQTLLQRNEYADGIKELEK  107 (281)
Q Consensus        80 ~~----------------------~~a~~~la~~~~~~g~~~~A~~~~~k  107 (281)
                      .+                      .+..|.+|.|+..+|++++|+..++.
T Consensus        98 k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A           98 KTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             -------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence            11                      26789999999999999999998764

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.16  E-value=5.5e-06  Score=73.16  Aligned_cols=75  Identities=13%  Similarity=0.058  Sum_probs=65.8

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL--------CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD--   78 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--   78 (281)
                      ..|..+..+.++|.+|..+|+|++|+.+|.+++.+        .|+-+..++|+|.+|..+|+|++|+..+++|+++-  
T Consensus       335 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~  414 (433)
T 3qww_A          335 SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEV  414 (433)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence            46788899999999999999999999999999977        34456789999999999999999999999998864  


Q ss_pred             ---Ccchh
Q 023501           79 ---HDSVK   83 (281)
Q Consensus        79 ---p~~~~   83 (281)
                         |+++.
T Consensus       415 ~lG~~Hp~  422 (433)
T 3qww_A          415 AHGKDHPY  422 (433)
T ss_dssp             HTCTTCHH
T ss_pred             HcCCCChH
Confidence               55554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.03  E-value=6.5e-05  Score=70.01  Aligned_cols=109  Identities=14%  Similarity=-0.029  Sum_probs=96.6

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc---
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAI-DAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD---   78 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---   78 (281)
                      +++++...|..+..|...+......|+.++|+ ..|.+|+...|.+..+|...+......|+++.|...+++++..-   
T Consensus       332 Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~  411 (679)
T 4e6h_A          332 YMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD  411 (679)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            55667777788899999999999999999997 99999999999999999999999999999999999999999752   


Q ss_pred             --------Cc-----------chhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           79 --------HD-----------SVKGHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        79 --------p~-----------~~~a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                              |.           ...+|..++......|..+.|...|.+|++.
T Consensus       412 ~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          412 LAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL  463 (679)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             hhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                    42           4567888899888999999999999999987

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.98  E-value=2.6e-05  Score=56.02  Aligned_cols=80  Identities=10%  Similarity=-0.039  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHhC-C-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGA---AIDAYTEAITLC-P-NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHY   86 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~   86 (281)
                      ...+.-+..|..+.+.+...+   +|..++..+... | ..-.+++.+|..++++|+|.+|..+++.+++++|.|..|.-
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            456778889999998888776   999999998887 5 56789999999999999999999999999999999988876


Q ss_pred             HHHHH
Q 023501           87 LLGQT   91 (281)
Q Consensus        87 ~la~~   91 (281)
                      ....+
T Consensus       113 Lk~~i  117 (126)
T 1nzn_A          113 LERLI  117 (126)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.95  E-value=0.0001  Score=64.74  Aligned_cols=92  Identities=20%  Similarity=0.212  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL   93 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~   93 (281)
                      +..+..+|..+.+.|+|++|++.|.++     +++..|...+.++...|+|+.|...... +...|++   ...+...|.
T Consensus       148 a~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Ye  218 (449)
T 1b89_A          148 VSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQ  218 (449)
T ss_dssp             TTCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHH
T ss_pred             hhhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHH
Confidence            356778999999999999999999999     4789999999999999999999776654 4455554   446888999


Q ss_pred             HhcChHHHHHHHHHHHhhccC
Q 023501           94 QRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        94 ~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ..|++++|+..+++++.+++.
T Consensus       219 k~G~~eEai~lLe~aL~le~a  239 (449)
T 1b89_A          219 DRGYFEELITMLEAALGLERA  239 (449)
T ss_dssp             HTTCHHHHHHHHHHHTTSTTC
T ss_pred             HCCCHHHHHHHHHHHhCCcHH
Confidence            999999999999999999644

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.76  E-value=0.0005  Score=64.09  Aligned_cols=113  Identities=11%  Similarity=-0.061  Sum_probs=94.0

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----------CCC-----------chHHHHHHHHHHH
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL-----------CPN-----------VPIYWTNRALCHL   59 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----------~p~-----------~~~~~~~~a~~~~   59 (281)
                      +++.++...|.....+...+......|+++.|...|++++..           .|.           .+.+|...+....
T Consensus       366 il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er  445 (679)
T 4e6h_A          366 YLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK  445 (679)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence            466777777777788888899999999999999999999975           253           3457888888888


Q ss_pred             HhcCHHHHHHHHHHHHhh-cCcchhHHHHHHHHHHHhcC-hHHHHHHHHHHHhhccC
Q 023501           60 KRNDWTKVEADCRKAIQL-DHDSVKGHYLLGQTLLQRNE-YADGIKELEKALNLGRG  114 (281)
Q Consensus        60 ~~~~~~~A~~~~~~al~l-~p~~~~a~~~la~~~~~~g~-~~~A~~~~~kal~~~p~  114 (281)
                      ..|+.+.|...+.+|++. .+.....|...|.+-...++ ++.|...|+++++..|+
T Consensus       446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~  502 (679)
T 4e6h_A          446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT  502 (679)
T ss_dssp             HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence            899999999999999998 55557778777877777654 89999999999999776

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.75  E-value=1.6e-05  Score=53.82  Aligned_cols=46  Identities=15%  Similarity=0.154  Sum_probs=37.1

Q ss_pred             cccCCcccccC-ceecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501          209 CCKITLDIFRD-PVITPSGVTYERAVILDHLDKVGKFDPITREPLRE  254 (281)
Q Consensus       209 ~c~i~~~~~~~-pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~  254 (281)
                      .|+.|.-.+.. ..+.||+|.||.+|+..|.......||.|+.++..
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            47888765554 45789999999999999987665579999998753

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.71  E-value=0.00057  Score=49.27  Aligned_cols=70  Identities=14%  Similarity=0.010  Sum_probs=37.8

Q ss_pred             hHHHHHHHHHHHHhcC---HHHHHHHHHHHHhhcCc-chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           48 PIYWTNRALCHLKRND---WTKVEADCRKAIQLDHD-SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        48 ~~~~~~~a~~~~~~~~---~~~A~~~~~~al~l~p~-~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      +..-++.|.++.+-.+   ...++..++..++.+|. .-+.+|.+|..++.+|+|++|..+.+.++++.|++..
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q  113 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  113 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence            3444555555544443   33455555555555552 3455566666666666666666666666666555433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.64  E-value=0.00093  Score=48.79  Aligned_cols=71  Identities=14%  Similarity=0.006  Sum_probs=41.9

Q ss_pred             chHHHHHHHHHHHHhcC---HHHHHHHHHHHHhhcC-cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           47 VPIYWTNRALCHLKRND---WTKVEADCRKAIQLDH-DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        47 ~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~l~p-~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      .+..-++.|.++.+-.+   ..+++..++..++.+| ..-+.+|.+|..++.+|+|++|..+.+..|+..|++..
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            45555556665555443   3456666666666655 34556666666666666666666666666666665433

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.64  E-value=0.0005  Score=50.67  Aligned_cols=104  Identities=15%  Similarity=-0.026  Sum_probs=88.9

Q ss_pred             hHHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHhCCCc--------hHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRY------GAAIDAYTEAITLCPNV--------PIYWTNRALCHLKRNDWTKVEADCRKAI   75 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~al   75 (281)
                      .|.+.+.|.......-+.|+.      +.-+..|++|+..-|-.        ..+|...|. +..+++.++|...|+.++
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHH
Confidence            456777888777777777988      88899999999987752        456666664 467899999999999999


Q ss_pred             hhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           76 QLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        76 ~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ++...+++.|...|+--..+|+...|.+.+.+++.++|.
T Consensus        88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            998889999999999999999999999999999999876

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.52  E-value=0.00071  Score=48.77  Aligned_cols=79  Identities=4%  Similarity=-0.083  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRY---GAAIDAYTEAITLCPN-VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL   88 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (281)
                      .++.-++.|..+.+.++-   ..+|..++..+...|. .-.+++.+|..++++|+|+.|.++++.+++++|+|..|.-..
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            456778888888877755   5799999999998884 578999999999999999999999999999999999886655


Q ss_pred             HHH
Q 023501           89 GQT   91 (281)
Q Consensus        89 a~~   91 (281)
                      ..+
T Consensus       119 ~~I  121 (134)
T 3o48_A          119 SMV  121 (134)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.48  E-value=0.00014  Score=47.02  Aligned_cols=48  Identities=8%  Similarity=0.103  Sum_probs=38.1

Q ss_pred             cccccCCcccccCcee-cCCCcccccchHHhHhccCC-CCCCCCCCCcCC
Q 023501          207 YLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVG-KFDPITREPLRE  254 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~-~~cP~~~~~~~~  254 (281)
                      .-.|.||..++..=+. ..|+|.|=..||.+||.... ..||+|+.++..
T Consensus        15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            3469999988875332 47999999999999998652 369999988763

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.44  E-value=0.00094  Score=50.15  Aligned_cols=82  Identities=16%  Similarity=0.071  Sum_probs=63.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------C-------------------CchHHHHHHHHHHHHhcCH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLC------P-------------------NVPIYWTNRALCHLKRNDW   64 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p-------------------~~~~~~~~~a~~~~~~~~~   64 (281)
                      +...++.+...|+.+|..++|..|...|.+|+...      +                   .+.++.+.+|.||.+++++
T Consensus        59 p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~  138 (167)
T 3ffl_A           59 PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQD  138 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCH
Confidence            34467789999999999999999999999997652      1                   1237889999999999999


Q ss_pred             HHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501           65 TKVEADCRKAIQLDHDSVKGHYLLGQTL   92 (281)
Q Consensus        65 ~~A~~~~~~al~l~p~~~~a~~~la~~~   92 (281)
                      ++|+..++.. -..-..++....||..|
T Consensus       139 ~~Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          139 KDAIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             HHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence            9999887543 22234677777777654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.37  E-value=0.0039  Score=45.51  Aligned_cols=78  Identities=4%  Similarity=-0.084  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRY---GAAIDAYTEAITLCPN-VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL   88 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (281)
                      .++.-++.|..+.+..+-   .++|..++..+...|. .-.+++.+|..++++|+|.+|.++++..++++|+|..|.-..
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            567778889999888766   4799999999998884 668999999999999999999999999999999998876554


Q ss_pred             HH
Q 023501           89 GQ   90 (281)
Q Consensus        89 a~   90 (281)
                      ..
T Consensus       118 ~~  119 (144)
T 1y8m_A          118 SM  119 (144)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=97.29  E-value=5.7e-05  Score=63.09  Aligned_cols=48  Identities=15%  Similarity=0.249  Sum_probs=38.0

Q ss_pred             cccccCCcccccC----cee----cCCCcccccchHHhHhccCC----------CCCCCCCCCcCC
Q 023501          207 YLCCKITLDIFRD----PVI----TPSGVTYERAVILDHLDKVG----------KFDPITREPLRE  254 (281)
Q Consensus       207 ~~~c~i~~~~~~~----pv~----~~~g~~~~~~~i~~~~~~~~----------~~cP~~~~~~~~  254 (281)
                      ...|+||...+.+    |..    .+|||.|-..||.+|+...+          ..||.|+.+++.
T Consensus       308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            4569999998887    532    36999999999999997521          249999999874

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.25  E-value=0.0099  Score=51.53  Aligned_cols=102  Identities=10%  Similarity=-0.036  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----------------------hHHHHHHHHHHHHhcCHHHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV----------------------PIYWTNRALCHLKRNDWTKV   67 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A   67 (281)
                      +....+.+...|......|+.+.|+..+.+|+.+-...                      ..+...++.++...|++.+|
T Consensus       111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a  190 (388)
T 2ff4_A          111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV  190 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            44445566667777778899999999999999884321                      13444577788899999999


Q ss_pred             HHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           68 EADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        68 ~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      +..+..++..+|.+-.+|..+..++...|+..+|+..|+++...
T Consensus       191 ~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~  234 (388)
T 2ff4_A          191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT  234 (388)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999887653

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=97.18  E-value=0.0099  Score=48.27  Aligned_cols=63  Identities=16%  Similarity=0.191  Sum_probs=58.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501           22 NYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG   84 (281)
Q Consensus        22 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (281)
                      ..+++.|+.++|+......|+.+|.|+.....+...+.-.|+|+.|...++-+.+++|.....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            467899999999999999999999999999999999999999999999999999999987554

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=97.11  E-value=0.00059  Score=42.27  Aligned_cols=48  Identities=13%  Similarity=0.075  Sum_probs=37.4

Q ss_pred             cccccCCcccccCceecCCC--c---ccccchHHhHhccC-CCCCCCCCCCcCC
Q 023501          207 YLCCKITLDIFRDPVITPSG--V---TYERAVILDHLDKV-GKFDPITREPLRE  254 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~~~~g--~---~~~~~~i~~~~~~~-~~~cP~~~~~~~~  254 (281)
                      .-.|.||..-..+|+++||.  +   -|=+.||.+|+... ...||+|+.++..
T Consensus         6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~   59 (60)
T 1vyx_A            6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence            44699998777788889965  3   67788999999753 3469999988764

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.01  E-value=0.016  Score=51.90  Aligned_cols=51  Identities=10%  Similarity=-0.035  Sum_probs=39.1

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHH
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNR   54 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~   54 (281)
                      +++++...|..+..|...+..+...|+.+.|...|.+|+.. |.+..++...
T Consensus       202 ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y  252 (493)
T 2uy1_A          202 HNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYY  252 (493)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            44455555666788888888888999999999999999999 8876555443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.96  E-value=0.0045  Score=58.02  Aligned_cols=80  Identities=16%  Similarity=0.210  Sum_probs=64.2

Q ss_pred             CHHHHHHHHHHHHHh--------CCCc----------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501           29 RYGAAIDAYTEAITL--------CPNV----------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ   90 (281)
Q Consensus        29 ~~~~A~~~~~~al~~--------~p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~   90 (281)
                      +=-+|+....++++.        .+.+          ..++...+..+...|+|+-|+..+++|+...|.....|+.|+.
T Consensus       300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~  379 (754)
T 4gns_B          300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLAR  379 (754)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence            345677777777642        2222          3455566777778899999999999999999999999999999


Q ss_pred             HHHHhcChHHHHHHHHHH
Q 023501           91 TLLQRNEYADGIKELEKA  108 (281)
Q Consensus        91 ~~~~~g~~~~A~~~~~ka  108 (281)
                      +|..+|+|+.|+-.++.+
T Consensus       380 vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          380 CHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHTTCHHHHHHHHHHS
T ss_pred             HHHHhccHHHHHHHHhcC
Confidence            999999999999777655

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.79  E-value=0.017  Score=51.82  Aligned_cols=84  Identities=7%  Similarity=-0.017  Sum_probs=69.6

Q ss_pred             CHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-CcchhHHHHHHHHHHHhcChHHHHHHHH
Q 023501           29 RYGAAIDAYTEAITLCP-NVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-HDSVKGHYLLGQTLLQRNEYADGIKELE  106 (281)
Q Consensus        29 ~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~la~~~~~~g~~~~A~~~~~  106 (281)
                      ..+.|...|.+.....- -|...|..+-.+|.+.|++++|...+++..+.. ..+...|..+-..|...|++++|...|.
T Consensus        85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~  164 (501)
T 4g26_A           85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA  164 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence            46889999988766532 267888999999999999999999999987654 2357788889999999999999999999


Q ss_pred             HHHhhc
Q 023501          107 KALNLG  112 (281)
Q Consensus       107 kal~~~  112 (281)
                      +..+..
T Consensus       165 ~M~~~G  170 (501)
T 4g26_A          165 HMVESE  170 (501)
T ss_dssp             HHHHTT
T ss_pred             HHHhcC
Confidence            988763

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.67  E-value=0.0075  Score=56.54  Aligned_cols=62  Identities=19%  Similarity=0.388  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKA   74 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   74 (281)
                      .+..+...+..+..+|+|+-|+....+|+...|.+...|..+|.||..+|+|+.|+-.++-+
T Consensus       336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            34577788999999999999999999999999999999999999999999999999777655

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=96.52  E-value=0.0019  Score=54.68  Aligned_cols=64  Identities=11%  Similarity=0.135  Sum_probs=51.5

Q ss_pred             CcccccCCcccccCcee-cCCCcc--cccchHHhHhccCCC-CCCCCCCCcCCCCCcccHHHHHHHHH
Q 023501          206 DYLCCKITLDIFRDPVI-TPSGVT--YERAVILDHLDKVGK-FDPITREPLRESQLVPNLAIKEAVRA  269 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv~-~~~g~~--~~~~~i~~~~~~~~~-~cP~~~~~~~~~~~~~n~~l~~~i~~  269 (281)
                      -.+.|||+...|..|+- ..|.|.  |+...+.+.....+. .||+|+..+...+|+.+..+.++++.
T Consensus       248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~  315 (371)
T 3i2d_A          248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN  315 (371)
T ss_dssp             EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred             EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence            45889999999999996 669997  777777766544432 59999999999999999888777654

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.47  E-value=0.079  Score=39.89  Aligned_cols=98  Identities=15%  Similarity=0.125  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHH--hhc-----------
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAI--QLD-----------   78 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--~l~-----------   78 (281)
                      ...+.-..++..++-.|+|..|+-++..     -+.....+-.+.||.++++|..|+..++..+  +.+           
T Consensus        31 ~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~  105 (242)
T 3kae_A           31 CKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQE  105 (242)
T ss_dssp             ---CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHT
T ss_pred             CChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccce
Confidence            3344556778899999999999887633     2345666668899999999999999999999  333           


Q ss_pred             ----Ccchh-HHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           79 ----HDSVK-GHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        79 ----p~~~~-a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                          |.+-+ .+..+|.++.+.|+.++|+.++...+...|-
T Consensus       106 ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l  146 (242)
T 3kae_A          106 MFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL  146 (242)
T ss_dssp             TSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             eeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence                34444 4456799999999999999999999888654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.44  E-value=0.071  Score=47.77  Aligned_cols=99  Identities=10%  Similarity=0.005  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-CcchhHHHHHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLC-PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-HDSVKGHYLLGQT   91 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~la~~   91 (281)
                      ...+..+-..+.+.|++++|...|.+..... .-+...|..+-.+|.+.|++++|.+.+++..+.. ..+...|..+-.+
T Consensus       105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~  184 (501)
T 4g26_A          105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV  184 (501)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            4456777888999999999999999987653 2257788888889999999999999999987764 2356788899999


Q ss_pred             HHHhcChHHHHHHHHHHHhhc
Q 023501           92 LLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        92 ~~~~g~~~~A~~~~~kal~~~  112 (281)
                      +...|++++|...+++..+..
T Consensus       185 ~~~~g~~d~A~~ll~~Mr~~g  205 (501)
T 4g26_A          185 SMDTKNADKVYKTLQRLRDLV  205 (501)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHT
T ss_pred             HhhCCCHHHHHHHHHHHHHhC
Confidence            999999999999999987764

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=96.15  E-value=0.0042  Score=52.47  Aligned_cols=65  Identities=14%  Similarity=0.132  Sum_probs=52.5

Q ss_pred             CCcccccCCcccccCcee-cCCCcc--cccchHHhHhccCCC-CCCCCCCCcCCCCCcccHHHHHHHHH
Q 023501          205 PDYLCCKITLDIFRDPVI-TPSGVT--YERAVILDHLDKVGK-FDPITREPLRESQLVPNLAIKEAVRA  269 (281)
Q Consensus       205 p~~~~c~i~~~~~~~pv~-~~~g~~--~~~~~i~~~~~~~~~-~cP~~~~~~~~~~~~~n~~l~~~i~~  269 (281)
                      .-.+.|||+...|..|+- ..|.|.  |+...+.+.....+. .||+|++.+...+|+-+..+.+++..
T Consensus       213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~  281 (360)
T 4fo9_A          213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND  281 (360)
T ss_dssp             EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred             EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence            346789999999999996 668887  888877776654443 59999999999999999888777653

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=95.97  E-value=0.0026  Score=43.89  Aligned_cols=31  Identities=16%  Similarity=0.221  Sum_probs=27.3

Q ss_pred             cccccCCcc-cccCcee--cCCCcccccchHHhH
Q 023501          207 YLCCKITLD-IFRDPVI--TPSGVTYERAVILDH  237 (281)
Q Consensus       207 ~~~c~i~~~-~~~~pv~--~~~g~~~~~~~i~~~  237 (281)
                      ++.|+||.+ .+.+||.  +.|||+||+.|+..+
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence            578999996 4788998  899999999999983

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.96  E-value=0.075  Score=47.47  Aligned_cols=80  Identities=15%  Similarity=0.078  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ   94 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~   94 (281)
                      ..+..+|+..-.+..+..|..+|.+|+.+.|++...|+.+|.+....|+.-+|+-+|-+++-....++.+.-++...+..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            35677899999999999999999999999999999999999999999999999999999998887888898888887765

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.91  E-value=0.087  Score=47.08  Aligned_cols=95  Identities=11%  Similarity=-0.089  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN-DWTKVEADCRKAIQLDHDSVKGHYLLGQT   91 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~la~~   91 (281)
                      ....|...+....+.++.+.|...|.+| ...+....+|...|..-+..+ +.+.|...++.+++.-|+.+..+..++..
T Consensus       285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~  363 (493)
T 2uy1_A          285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF  363 (493)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            3456677777777788899999999999 433335667777777666666 59999999999999989988888888888


Q ss_pred             HHHhcChHHHHHHHHHH
Q 023501           92 LLQRNEYADGIKELEKA  108 (281)
Q Consensus        92 ~~~~g~~~~A~~~~~ka  108 (281)
                      ....|+.+.|...|+++
T Consensus       364 e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          364 LLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHTCHHHHHHHHHHS
T ss_pred             HHHcCCHHHHHHHHHHH
Confidence            88999999999999887

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.62  E-value=0.15  Score=44.06  Aligned_cols=94  Identities=10%  Similarity=-0.043  Sum_probs=75.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc---Ccc----hhH
Q 023501           18 RLDGNYYFSKDRYGAAIDAYTEAITLCPN------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLD---HDS----VKG   84 (281)
Q Consensus        18 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---p~~----~~a   84 (281)
                      ..+|..|+..|+|.+|...+++....-..      ...++......|..++++.++...+.+|.+..   +.+    +..
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i  182 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL  182 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            37899999999999999999998775222      24678888999999999999999999987654   122    334


Q ss_pred             HHHHHHHHH-HhcChHHHHHHHHHHHhh
Q 023501           85 HYLLGQTLL-QRNEYADGIKELEKALNL  111 (281)
Q Consensus        85 ~~~la~~~~-~~g~~~~A~~~~~kal~~  111 (281)
                      ...-|.+++ ..++|..|...|-.++..
T Consensus       183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          183 DLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            455688888 899999999999999855

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.48  E-value=0.062  Score=47.15  Aligned_cols=98  Identities=15%  Similarity=0.040  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc---Ccc---hhH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN---VPIYWTNRALCHLKRNDWTKVEADCRKAIQLD---HDS---VKG   84 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---p~~---~~a   84 (281)
                      ...+..+|..+++.|++++|++.|.++.....+   -..++.....++...++|..+...+.++-.+-   +++   .+.
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            446778999999999999999999999876443   35788888889999999999999999986553   221   234


Q ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           85 HYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        85 ~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      ....|.++...++|.+|...|..++..
T Consensus       211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          211 KTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            455678888899999999999988766

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.44  E-value=0.099  Score=42.44  Aligned_cols=58  Identities=10%  Similarity=0.032  Sum_probs=55.1

Q ss_pred             HHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           57 CHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        57 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      -+++.|+.++|+..+...++.+|.+......+.+.++-.|+|+.|.+.++.+.+++|.
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~   63 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE   63 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence            3567899999999999999999999999999999999999999999999999999887

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.26  E-value=0.12  Score=37.99  Aligned_cols=106  Identities=14%  Similarity=0.030  Sum_probs=77.2

Q ss_pred             HHhCCCchHHHHHHHHHHHHhcCH------HHHHHHHHHHHhhcCc--------chhHHHHHHHHHHHhcChHHHHHHHH
Q 023501           41 ITLCPNVPIYWTNRALCHLKRNDW------TKVEADCRKAIQLDHD--------SVKGHYLLGQTLLQRNEYADGIKELE  106 (281)
Q Consensus        41 l~~~p~~~~~~~~~a~~~~~~~~~------~~A~~~~~~al~l~p~--------~~~a~~~la~~~~~~g~~~~A~~~~~  106 (281)
                      |-+.|++++.|.......-+.|+.      +.-++.|++|+..-|.        ++..|.+.|.. ...++.++|.+.|+
T Consensus         6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~   84 (161)
T 4h7y_A            6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ   84 (161)
T ss_dssp             ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred             eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence            346899999999998888888998      8889999999988774        34556666654 67799999999999


Q ss_pred             HHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501          107 KALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKH  163 (281)
Q Consensus       107 kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (281)
                      .++.+...      + ..++         +..++-+.|.+....+.+.+.++++..+
T Consensus        85 ~a~~~hKk------F-AKiw---------i~~AqFEiRqgnl~kARkILg~AiG~~~  125 (161)
T 4h7y_A           85 MARANCKK------F-AFVH---------ISFAQFELSQGNVKKSKQLLQKAVERGA  125 (161)
T ss_dssp             HHHHHCTT------B-HHHH---------HHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhHH------H-HHHH---------HHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence            99998332      1 2333         3334445567888888888888887543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.77  E-value=0.76  Score=40.40  Aligned_cols=101  Identities=13%  Similarity=0.095  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCC-----chHHHHHHHHHHHHhcCHHHHHHHHHHHHh---hcCcc
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL-CPN-----VPIYWTNRALCHLKRNDWTKVEADCRKAIQ---LDHDS   81 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---l~p~~   81 (281)
                      ...+.....++..+...|+|.+|...+.....- ...     -..++......|...++|..|...++++..   -.+..
T Consensus       134 ~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~  213 (445)
T 4b4t_P          134 VERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY  213 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc
Confidence            346777788999999999999999999886532 211     146788889999999999999999998742   12222


Q ss_pred             ----hhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           82 ----VKGHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        82 ----~~a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                          ...+...|..+...++|.+|..+|..++..
T Consensus       214 ~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          214 ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence                346677789999999999999999999876

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.44  E-value=0.51  Score=35.79  Aligned_cols=25  Identities=8%  Similarity=-0.161  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTE   39 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~   39 (281)
                      ..|+.+|...+..|+++-|..+|.+
T Consensus        35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~   59 (177)
T 3mkq_B           35 ITWERLIQEALAQGNASLAEMIYQT   59 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHH
Confidence            3444555555555555555555444

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.41  E-value=0.18  Score=45.03  Aligned_cols=62  Identities=15%  Similarity=0.021  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           50 YWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        50 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      ++..+|....-...+..|..+|.+|+.+.|.++..|..+|.+....|+.-+|+-+|.+++..
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence            44455666555667899999999999999999999999999999999999999999998865

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.32  E-value=0.31  Score=42.07  Aligned_cols=65  Identities=11%  Similarity=0.038  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQ   76 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   76 (281)
                      ....++..++..++..|++.+|+..+..++..+|.+-.+|..+-.++...|+..+|+..|+++-+
T Consensus       169 ~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          169 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33456667888899999999999999999999999999999999999999999999999988754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.94  E-value=0.6  Score=43.70  Aligned_cols=81  Identities=11%  Similarity=0.081  Sum_probs=56.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh--------hcCcchhHHHHHHHHH
Q 023501           21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQ--------LDHDSVKGHYLLGQTL   92 (281)
Q Consensus        21 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--------l~p~~~~a~~~la~~~   92 (281)
                      ...++..|++++|.+...     ..++...|..+|..+.+.++++.|...|.++=.        ....+.+.+..++...
T Consensus       659 f~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a  733 (814)
T 3mkq_A          659 FELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDA  733 (814)
T ss_dssp             HHHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             eehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHH
Confidence            345677888998888753     335678889999999999999999888877521        1234555566667777


Q ss_pred             HHhcChHHHHHHHH
Q 023501           93 LQRNEYADGIKELE  106 (281)
Q Consensus        93 ~~~g~~~~A~~~~~  106 (281)
                      ...|++..|...|.
T Consensus       734 ~~~~~~~~A~~~~~  747 (814)
T 3mkq_A          734 ETTGKFNLAFNAYW  747 (814)
T ss_dssp             HHTTCHHHHHHHHH
T ss_pred             HHcCchHHHHHHHH
Confidence            67777766665554

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=92.76  E-value=0.11  Score=41.52  Aligned_cols=49  Identities=8%  Similarity=0.102  Sum_probs=38.5

Q ss_pred             cccccCCcccccCcee-cCCCcccccchHHhHhccCC-CCCCCCCCCcCCC
Q 023501          207 YLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVG-KFDPITREPLRES  255 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~-~~cP~~~~~~~~~  255 (281)
                      -..|.+|..+...-+. ..|++.|=..|+..|+.... ..||.|+.+.+..
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            4469999988886553 34999999999999997643 3599999987643

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.75  E-value=0.26  Score=43.92  Aligned_cols=80  Identities=6%  Similarity=-0.077  Sum_probs=62.2

Q ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-----CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcch
Q 023501           47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-----HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYI  121 (281)
Q Consensus        47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-----p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~  121 (281)
                      .+.++..+-..|+..+.|+.|.....++.-..     +.....+|.+|.++.-.++|.+|.+++..|+..+|.......+
T Consensus       230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gf  309 (523)
T 4b4t_S          230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGF  309 (523)
T ss_dssp             HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHH
T ss_pred             hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhH
Confidence            46778888889999999999999999984221     1236778889999999999999999999999998865444333


Q ss_pred             HHHHH
Q 023501          122 VEDIW  126 (281)
Q Consensus       122 ~~~~~  126 (281)
                      ...+.
T Consensus       310 r~~a~  314 (523)
T 4b4t_S          310 LQQSN  314 (523)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            33333

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=92.08  E-value=4  Score=35.11  Aligned_cols=99  Identities=11%  Similarity=0.011  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----------------------CCc-----------------------
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLC----------------------PNV-----------------------   47 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----------------------p~~-----------------------   47 (281)
                      .-.+...+|..|.+.|++++-..+.......-                      |+.                       
T Consensus        18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl   97 (394)
T 3txn_A           18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL   97 (394)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567889999999999988777665443221                      221                       


Q ss_pred             -hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh----cC--cchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           48 -PIYWTNRALCHLKRNDWTKVEADCRKAIQL----DH--DSVKGHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        48 -~~~~~~~a~~~~~~~~~~~A~~~~~~al~l----~p--~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                       ..+-..+|..|+..|+|.+|...+.+..+-    |.  .-.+.+..-.++|..++++.++...+.++...
T Consensus        98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~  168 (394)
T 3txn_A           98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT  168 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence             012236777888888888887777666542    21  22456666677788888888888888877766

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.06  E-value=3.3  Score=40.30  Aligned_cols=97  Identities=7%  Similarity=-0.127  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-CcchhHHHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITL----CPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLD-HDSVKGHYLLG   89 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~la   89 (281)
                      ..+..+-+.+.+.|+.++|...|....+.    -.-|...|+-+-..|.+.|++++|.+.+++-.+.. .-+...|..+-
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            35778888999999999999999764322    22367889999999999999999999999987655 23567778888


Q ss_pred             HHHHHhcCh-HHHHHHHHHHHhh
Q 023501           90 QTLLQRNEY-ADGIKELEKALNL  111 (281)
Q Consensus        90 ~~~~~~g~~-~~A~~~~~kal~~  111 (281)
                      .++...|+. ++|...|++....
T Consensus       208 ~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHc
Confidence            889998885 6777777766554

>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A

Probab=91.65  E-value=0.33  Score=32.55  Aligned_cols=50  Identities=24%  Similarity=0.406  Sum_probs=39.7

Q ss_pred             CCcccccCCcccccCceecC--CC----cccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501          205 PDYLCCKITLDIFRDPVITP--SG----VTYERAVILDHLDKVGKFDPITREPLRES  255 (281)
Q Consensus       205 p~~~~c~i~~~~~~~pv~~~--~g----~~~~~~~i~~~~~~~~~~cP~~~~~~~~~  255 (281)
                      +..+.|||+..+-..-|...  .|    .-|++..+.+.+..+.. -|++|+|++..
T Consensus        25 ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~~-HPLSREpit~s   80 (102)
T 2kkx_A           25 LEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGLP-HPLTREPITAS   80 (102)
T ss_dssp             TGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTCC-CTTTCCCCCTT
T ss_pred             HHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCCC-CCCccCCCCHh
Confidence            46788999999988888533  33    34889999999887774 89999999865

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=91.46  E-value=5.4  Score=33.16  Aligned_cols=60  Identities=10%  Similarity=-0.103  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhhccCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           85 HYLLGQTLLQRNEYADGIKELEKALNLGRGAK-PKGYIVEDIWQELARAKYLLWEQESSKR  144 (281)
Q Consensus        85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~  144 (281)
                      ....|.-+...|++.+|+..|+.+|-..|-.. +......++.+.+..+..++-....+..
T Consensus       117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~  177 (325)
T 3mv2_A          117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELE  177 (325)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45668888899999999999999998876432 2233566777778877777666555443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.95  E-value=0.61  Score=46.17  Aligned_cols=91  Identities=8%  Similarity=-0.010  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----------------------CCchHHHHHHHHHHHHhcCHHHHHHHHH
Q 023501           16 QLRLDGNYYFSKDRYGAAIDAYTEAITLC-----------------------PNVPIYWTNRALCHLKRNDWTKVEADCR   72 (281)
Q Consensus        16 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~   72 (281)
                      .-+.+|..++..|++++|..+|.+|-..-                       ...+.+|......+.+.+.++.+++...
T Consensus       844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~  923 (1139)
T 4fhn_B          844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  923 (1139)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34789999999999999999998873211                       1124677888888889999999999999


Q ss_pred             HHHhhcCcch-----hHHHHHHHHHHHhcChHHHHHHHH
Q 023501           73 KAIQLDHDSV-----KGHYLLGQTLLQRNEYADGIKELE  106 (281)
Q Consensus        73 ~al~l~p~~~-----~a~~~la~~~~~~g~~~~A~~~~~  106 (281)
                      .|++..+...     ..|.++-..+..+|+|++|...+.
T Consensus       924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM  962 (1139)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred             HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            9998764322     256777888999999999987764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=90.67  E-value=2.8  Score=39.16  Aligned_cols=75  Identities=16%  Similarity=0.077  Sum_probs=53.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcC
Q 023501           18 RLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNE   97 (281)
Q Consensus        18 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~   97 (281)
                      ......+-+.|.+++|+...+        ++....   .....+|+++.|.+.++.     .++...|..+|..+.+.|+
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~  696 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFN  696 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCC
Confidence            344445566777777776542        232222   234678999999887632     2567889999999999999


Q ss_pred             hHHHHHHHHHH
Q 023501           98 YADGIKELEKA  108 (281)
Q Consensus        98 ~~~A~~~~~ka  108 (281)
                      ++.|+..|.++
T Consensus       697 ~~~A~~~y~~~  707 (814)
T 3mkq_A          697 FKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999998875

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=90.34  E-value=1.6  Score=40.11  Aligned_cols=91  Identities=13%  Similarity=0.075  Sum_probs=62.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcCh
Q 023501           19 LDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEY   98 (281)
Q Consensus        19 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~   98 (281)
                      .+|..++..+...++...+.++.....++ ...-.++...+..|+|+.|...+.+.-.-.....+..|.+|.++..+|+.
T Consensus       257 ~ia~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~  335 (618)
T 1qsa_A          257 IVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGRE  335 (618)
T ss_dssp             HHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCChHHHHHHHhccccCCCh-HHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCH
Confidence            34444444553446666666655444333 33444444456779999999988765554445688899999999999999


Q ss_pred             HHHHHHHHHHHh
Q 023501           99 ADGIKELEKALN  110 (281)
Q Consensus        99 ~~A~~~~~kal~  110 (281)
                      ++|...|.++..
T Consensus       336 ~~a~~~~~~~a~  347 (618)
T 1qsa_A          336 AEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999888764

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=88.75  E-value=1.1  Score=29.97  Aligned_cols=11  Identities=36%  Similarity=0.374  Sum_probs=4.8

Q ss_pred             HHHHHHHHHhh
Q 023501          101 GIKELEKALNL  111 (281)
Q Consensus       101 A~~~~~kal~~  111 (281)
                      |++.|..++..
T Consensus        41 Aie~l~~alk~   51 (93)
T 1wfd_A           41 GIDMLLQVLKG   51 (93)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            33444444444

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=88.58  E-value=4.2  Score=30.71  Aligned_cols=48  Identities=17%  Similarity=0.167  Sum_probs=37.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 023501           22 NYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKA   74 (281)
Q Consensus        22 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   74 (281)
                      ....+.|+++.|.+.....     ++...|..+|...+..|+++-|...|.++
T Consensus        13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            4456778888888886653     56778888888888888888888877765

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=87.23  E-value=7.7  Score=29.03  Aligned_cols=15  Identities=13%  Similarity=0.071  Sum_probs=9.7

Q ss_pred             CCCcccccCCccccc
Q 023501          204 VPDYLCCKITLDIFR  218 (281)
Q Consensus       204 ~p~~~~c~i~~~~~~  218 (281)
                      .+..+.|++|+-+..
T Consensus       135 ~~~~~~C~~CG~i~~  149 (170)
T 3pwf_A          135 IKKVYICPICGYTAV  149 (170)
T ss_dssp             CSCEEECTTTCCEEE
T ss_pred             CCCeeEeCCCCCeeC
Confidence            456677887765554

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=86.47  E-value=1.7  Score=28.73  Aligned_cols=34  Identities=24%  Similarity=0.275  Sum_probs=24.6

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAIT   42 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~   42 (281)
                      .+...|..+-.++..+.+.|+|++||.+..+|..
T Consensus        10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~   43 (97)
T 2crb_A           10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATT   43 (97)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence            3445677777788888888888888887666544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=86.36  E-value=21  Score=34.89  Aligned_cols=65  Identities=6%  Similarity=-0.115  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh----cCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           48 PIYWTNRALCHLKRNDWTKVEADCRKAIQL----DHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l----~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                      ...|+.+-.+|.+.|+.++|...+.+..+.    -.-+...|..+-..|...|++++|.+.|.+.....
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G  195 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG  195 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence            356888888999999999999999765432    13467899999999999999999999999988763

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=85.70  E-value=13  Score=30.72  Aligned_cols=94  Identities=13%  Similarity=0.053  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------------------------CCCchHHHHHHHHHHHHhcCHH-H
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITL-------------------------CPNVPIYWTNRALCHLKRNDWT-K   66 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------------------------~p~~~~~~~~~a~~~~~~~~~~-~   66 (281)
                      .-+.+..+.+.|.++++|++|++.+......                         .|-+......+..++.....-+ .
T Consensus        32 AhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~  111 (312)
T 2wpv_A           32 AHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPN  111 (312)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCch
Confidence            3456677788888888888888885544322                         1111222222222222211100 0


Q ss_pred             HHHHHHHHHhhc-------CcchhHHHHHHHHHHHhcChHHHHHHHH
Q 023501           67 VEADCRKAIQLD-------HDSVKGHYLLGQTLLQRNEYADGIKELE  106 (281)
Q Consensus        67 A~~~~~~al~l~-------p~~~~a~~~la~~~~~~g~~~~A~~~~~  106 (281)
                      =.+..++|++-.       -.++..|..+|..|..-|++.+|..+|-
T Consensus       112 r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          112 LKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             HHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            112233333221       1467899999999999999999998875

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=85.48  E-value=1.6  Score=28.48  Aligned_cols=16  Identities=25%  Similarity=0.329  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHhhccC
Q 023501           99 ADGIKELEKALNLGRG  114 (281)
Q Consensus        99 ~~A~~~~~kal~~~p~  114 (281)
                      .+|++.|.+++...|+
T Consensus        43 ~~aie~l~~alk~e~d   58 (83)
T 2w2u_A           43 KKAIEVLAQLVSLYRD   58 (83)
T ss_dssp             HHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHCCC
Confidence            4455555666665554

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=85.41  E-value=5.2  Score=29.01  Aligned_cols=92  Identities=15%  Similarity=0.116  Sum_probs=58.1

Q ss_pred             HHHHHHHHHH--HhcCCHHHHHHHHHHHHHhCCCchHHHHHHHH-HHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501           15 EQLRLDGNYY--FSKDRYGAAIDAYTEAITLCPNVPIYWTNRAL-CHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT   91 (281)
Q Consensus        15 ~~~~~~g~~~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~   91 (281)
                      +.+-..|..+  -..|+...-+.+|-+.    ..++. |..+|. .+...|.-++--+.+...+..++-++..++.+|.+
T Consensus        60 ~vLd~IGkiFDis~C~NlKrVi~C~~~~----n~~se-~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~A  134 (172)
T 1wy6_A           60 QVLDKIGSYFDLDKCQNLKSVVECGVIN----NTLNE-HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANA  134 (172)
T ss_dssp             HHHHHHGGGSCGGGCSCTHHHHHHHHHT----TCCCH-HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHH
T ss_pred             HHHHHHhhhcCcHhhhcHHHHHHHHHHh----cchHH-HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            3444445443  3556667777776442    22222 333443 34456666665556666566677778888999999


Q ss_pred             HHHhcChHHHHHHHHHHHhh
Q 023501           92 LLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        92 ~~~~g~~~~A~~~~~kal~~  111 (281)
                      |...|+..+|-+.+.+|-+-
T Consensus       135 y~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A          135 LRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHhcchhhHHHHHHHHHHh
Confidence            99999999998888888766

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=84.98  E-value=11  Score=28.52  Aligned_cols=70  Identities=9%  Similarity=-0.038  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--h---------------CCCchH-HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAIT--L---------------CPNVPI-YWTNRALCHLKRNDWTKVEADCRKAI   75 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~--~---------------~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al   75 (281)
                      +....-.+..+.+.++|..|+...+..+.  .               +|.|-+ ++..+|..+-+.|+-++|+..+....
T Consensus        62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf  141 (242)
T 3kae_A           62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF  141 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence            55666778889999999999999999982  2               233444 55567889999999999999999999


Q ss_pred             hhcCcchh
Q 023501           76 QLDHDSVK   83 (281)
Q Consensus        76 ~l~p~~~~   83 (281)
                      ..+|-++.
T Consensus       142 ~~~~lf~~  149 (242)
T 3kae_A          142 GKSFLFSP  149 (242)
T ss_dssp             HHCCCHHH
T ss_pred             CCccccch
Confidence            98875543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.90  E-value=5.8  Score=34.50  Aligned_cols=68  Identities=12%  Similarity=0.020  Sum_probs=57.4

Q ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC---cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           47 VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDH---DSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p---~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ...++..+|..|...|++++|.+.+.++.....   .-...++....++...++|..+...+.++..+...
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~  200 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK  200 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc
Confidence            346788899999999999999999999876542   34678888889999999999999999999877544

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=84.45  E-value=2.2  Score=27.99  Aligned_cols=32  Identities=25%  Similarity=0.262  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAIT   42 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~   42 (281)
                      +..|..+...|...-..|+|++|+.+|..|++
T Consensus        13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie   44 (86)
T 4a5x_A           13 STAAATVLKRAVELDSESRYPQALVCYQEGID   44 (86)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44566666677777777777777777766665

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=84.29  E-value=2.1  Score=27.96  Aligned_cols=31  Identities=19%  Similarity=0.202  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAIT   42 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~   42 (281)
                      ..|..+...|...=+.|+|++|+.+|..+++
T Consensus        17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie   47 (83)
T 2w2u_A           17 EMARKYAINAVKADKEGNAEEAITNYKKAIE   47 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4556667777777777888888777777665

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.27  E-value=3  Score=37.17  Aligned_cols=70  Identities=13%  Similarity=0.111  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV-------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      ..++..+..+-..|+..+.|+.|..+..++.  .|..       ..+++..|.++.-.++|.+|...+..|+...|.+.
T Consensus       228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            4567888889999999999999999999984  4432       46778889999999999999999999999887653

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=83.58  E-value=19  Score=30.21  Aligned_cols=95  Identities=15%  Similarity=0.096  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-C------------------------CCchHHHHHHHHHHHHhcC---
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL-C------------------------PNVPIYWTNRALCHLKRND---   63 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~------------------------p~~~~~~~~~a~~~~~~~~---   63 (281)
                      +.-+.+..+.+.|.++++|++|++.+...... -                        |-+......+..++.....   
T Consensus        33 EAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p  112 (336)
T 3lpz_A           33 EAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEP  112 (336)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCc
Confidence            34456777888888999999998875443221 0                        1111222223333322221   


Q ss_pred             -----HHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHH
Q 023501           64 -----WTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELE  106 (281)
Q Consensus        64 -----~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~  106 (281)
                           ..+|+.+..+.=...-.++..|..+|..|..-+++.+|..+|-
T Consensus       113 ~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i  160 (336)
T 3lpz_A          113 VRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV  160 (336)
T ss_dssp             HHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence                 1223333322101112468899999999999999999998873

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=83.54  E-value=1.9  Score=28.07  Aligned_cols=16  Identities=19%  Similarity=0.162  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHhhccC
Q 023501           99 ADGIKELEKALNLGRG  114 (281)
Q Consensus        99 ~~A~~~~~kal~~~p~  114 (281)
                      .+|++.|.+++...|+
T Consensus        35 ~~aie~l~~~lk~e~d   50 (83)
T 2v6y_A           35 KKAIEVLSQIIVLYPE   50 (83)
T ss_dssp             HHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHCCC
Confidence            4445555566655544

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=83.37  E-value=2  Score=27.27  Aligned_cols=32  Identities=25%  Similarity=0.524  Sum_probs=28.1

Q ss_pred             HHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           86 YLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        86 ~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      ..+|+.+...|++++|+.+|-+|+..+|.+..
T Consensus        21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~   52 (73)
T 3ax2_A           21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ   52 (73)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence            56799999999999999999999999987433

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=82.71  E-value=2.6  Score=27.47  Aligned_cols=31  Identities=19%  Similarity=0.142  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAIT   42 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~   42 (281)
                      ..|..+...|...=+.|+|++|+.+|..+++
T Consensus         9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie   39 (83)
T 2v6y_A            9 DMARKYAILAVKADKEGKVEDAITYYKKAIE   39 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4555666667777777777777777766665

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=82.07  E-value=0.73  Score=32.52  Aligned_cols=49  Identities=16%  Similarity=0.099  Sum_probs=38.5

Q ss_pred             CcccccCCcccccC---ceecCCCcccccchHHhHhccCCCCCCCCCCCcCCC
Q 023501          206 DYLCCKITLDIFRD---PVITPSGVTYERAVILDHLDKVGKFDPITREPLRES  255 (281)
Q Consensus       206 ~~~~c~i~~~~~~~---pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~  255 (281)
                      .-|.|..|...+.+   .-...+|..||+.|..+-+...+ .|-.|++++...
T Consensus        31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~-~C~~C~~~I~~~   82 (122)
T 1m3v_A           31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSG-AGGSGGHMGSGG   82 (122)
T ss_dssp             HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCC-SSSCSSCCSCCE
T ss_pred             hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCC-ccccCCCCcCch
Confidence            45899999999863   45678999999999988775433 499999888754

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=81.86  E-value=8.3  Score=25.00  Aligned_cols=9  Identities=33%  Similarity=0.014  Sum_probs=3.4

Q ss_pred             HHHHHHHHH
Q 023501           66 KVEADCRKA   74 (281)
Q Consensus        66 ~A~~~~~~a   74 (281)
                      .|+....+|
T Consensus        12 ~A~~l~~~A   20 (85)
T 2v6x_A           12 KGIELVQKA   20 (85)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1

Probab=81.62  E-value=0.27  Score=32.78  Aligned_cols=41  Identities=17%  Similarity=0.124  Sum_probs=28.3

Q ss_pred             cccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501          207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLR  253 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~  253 (281)
                      +..||.|...|.    ...|+.+|..|=..+.. .. .||-|+++|.
T Consensus        32 ~~~CP~Cq~eL~----~~g~~~hC~~C~~~f~~-~a-~CPdC~q~Le   72 (101)
T 2jne_A           32 ELHCPQCQHVLD----QDNGHARCRSCGEFIEM-KA-LCPDCHQPLQ   72 (101)
T ss_dssp             CCBCSSSCSBEE----EETTEEEETTTCCEEEE-EE-ECTTTCSBCE
T ss_pred             cccCccCCCcce----ecCCEEECccccchhhc-cc-cCcchhhHHH
Confidence            378999996554    23455569999665443 33 4999999875

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=81.33  E-value=23  Score=34.30  Aligned_cols=90  Identities=19%  Similarity=0.050  Sum_probs=68.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh-hcC------------------
Q 023501           19 LDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQ-LDH------------------   79 (281)
Q Consensus        19 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-l~p------------------   79 (281)
                      .+...+...|.++-|..    .+..-|.++..-+-+|.+|+..|++++|...+++|-. +..                  
T Consensus       815 ~l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~  890 (950)
T 4gq2_M          815 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  890 (950)
T ss_dssp             HHHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred             HHHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence            35677788888876544    3566777877778899999999999999999988742 111                  


Q ss_pred             ----cchhHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           80 ----DSVKGHYLLGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        80 ----~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                          .....|.....++...+-++-+++..+.|+...
T Consensus       891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~  927 (950)
T 4gq2_M          891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK  927 (950)
T ss_dssp             TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence                012366777888888899999999999999764

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=80.86  E-value=23  Score=29.39  Aligned_cols=61  Identities=7%  Similarity=-0.002  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           84 GHYLLGQTLLQRNEYADGIKELEKALNLGRGAK-PKGYIVEDIWQELARAKYLLWEQESSKR  144 (281)
Q Consensus        84 a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~  144 (281)
                      .....|.-+...|++.+|+..|+.+|-..|-.. +......++.+.+..+..++-....+..
T Consensus       104 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~  165 (320)
T 3mkr_B          104 QRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETE  165 (320)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346678888889999999999999998876432 2333456677777777777665554443

>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A

Probab=80.72  E-value=17  Score=27.71  Aligned_cols=8  Identities=25%  Similarity=0.521  Sum_probs=6.8

Q ss_pred             CCCCCCCC
Q 023501          244 FDPITREP  251 (281)
Q Consensus       244 ~cP~~~~~  251 (281)
                      .||+|+.+
T Consensus       173 ~CP~C~~~  180 (191)
T 1lko_A          173 LCPACAHP  180 (191)
T ss_dssp             BCTTTCCB
T ss_pred             CCCCCcCC
Confidence            59999976

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=80.16  E-value=16  Score=27.07  Aligned_cols=29  Identities=7%  Similarity=0.173  Sum_probs=19.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 023501           17 LRLDGNYYFSKDRYGAAIDAYTEAITLCP   45 (281)
Q Consensus        17 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p   45 (281)
                      -...|..+|..|+|-+|-+.++.+-...+
T Consensus        35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~   63 (161)
T 2ijq_A           35 AVVHGVRLYNSGEFHESHDCFEDEWYNYG   63 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhcC
Confidence            34566777777777777777777655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	281
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-19
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	9e-19
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	1e-15
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-11
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	9e-11
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	3e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-05
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	9e-10
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	6e-09
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-08
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	1e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	6e-08
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	9e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-05
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	9e-07
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	1e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	3e-06
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-06
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-04
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	3e-05
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	1e-04
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	1e-04
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	2e-04
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	3e-04
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	7e-04
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.002
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	0.003
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	0.003

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.2 bits (199), Expect = 3e-19
 Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 15/197 (7%)

Query: 14  AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRK 73
           A++L+  GN  F   +Y  A   Y  AIT  P V +Y+TNRALC+LK     +  ADCR+
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 74  AIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAK 133
           A++LD  SVK H+ LGQ  L+   Y + I  L++A +L +  + +    +DI   L  AK
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK--EQRLNFGDDIPSALRIAK 121

Query: 134 YLLWEQESSKRSW---ELQSLKEACEAALEEKHVLDISRKEGFLDEAS----------ST 180
              W     +R     EL S      AA  E+ + +  R     ++            + 
Sbjct: 122 KKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAK 181

Query: 181 HLKQMEALRQVFRKAAE 197
           H K M  + ++F +  E
Sbjct: 182 HDKYMADMDELFSQVDE 198

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 76.7 bits (188), Expect = 9e-19
 Identities = 27/73 (36%), Positives = 42/73 (57%)

Query: 203 EVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLA 262
           E P+Y  C I+L++ +DPVI  +G TYER+ I   LD   K  P ++E L  + L PN  
Sbjct: 4   EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYV 63

Query: 263 IKEAVRAYMDKHG 275
           +K  +  + + +G
Sbjct: 64  LKSLIALWCESNG 76

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.0 bits (165), Expect = 1e-15
 Identities = 39/76 (51%), Positives = 59/76 (77%)

Query: 203 EVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLA 262
           ++PDYLC KI+ ++ R+P ITPSG+TY+R  I +HL +VG F+P+TR PL + QL+PNLA
Sbjct: 3   DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA 62

Query: 263 IKEAVRAYMDKHGWAY 278
           +KE + A++ ++GW  
Sbjct: 63  MKEVIDAFISENGWVE 78

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 1e-11
 Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 15/136 (11%)

Query: 11  AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD 70
            KQA + +  GN  + K  +  A+  Y +A  L P    Y TN+A  + ++ D+ K    
Sbjct: 1   GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60

Query: 71  CRKAIQLDHDSVKGH-------YLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVE 123
           C KAI++  ++ + +         +G +  +  +Y D I    K+L   R          
Sbjct: 61  CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR--------TP 112

Query: 124 DIWQELARAKYLLWEQ 139
           D+ ++  +A+ +L EQ
Sbjct: 113 DVLKKCQQAEKILKEQ 128

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 9e-11
 Identities = 32/173 (18%), Positives = 61/173 (35%), Gaps = 7/173 (4%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
            +A  L  +G     K  +  A+DA++              N    +    + T+ E   
Sbjct: 3   VEAISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAF 59

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELAR 131
            ++I  D      ++  G    Q  +Y   IK+L++AL   RG +   Y +  +  +L  
Sbjct: 60  TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA 119

Query: 132 AKYLLWEQESSKRSWELQSLKEACEAALEEKHVLDISRKEGFLDEASSTHLKQ 184
            + L        +  E +  +E    A      +    +   +D+A     KQ
Sbjct: 120 CEVLYNIAFMYAKKEEWKKAEEQLALATS----MKSEPRHSKIDKAMECVWKQ 168

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 3e-10
 Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 203 EVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFD--PITREPLRESQLVPN 260
            +   L C I L++ ++PV T     + +  +L  L++       P+ +  + +  L  +
Sbjct: 17  AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76

Query: 261 LAIKEAVRAY 270
               + V   
Sbjct: 77  TRFSQLVEEL 86

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 5e-10
 Identities = 19/91 (20%), Positives = 36/91 (39%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
            N    K     A D Y  A+ LCP       N A    ++ +  +     RKA+++  +
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
               H  L   L Q+ +  + +   ++A+ +
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 6e-10
 Identities = 19/91 (20%), Positives = 34/91 (37%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
              Y+ +     AID Y  AI L P+ P  + N A    ++    + E     A++L   
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
                  L     ++    + ++   KAL +
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEV 334

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 7e-09
 Identities = 12/76 (15%), Positives = 28/76 (36%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
            N    +     A+  Y +A+ + P      +N A    ++    +     ++AI++   
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371

Query: 81  SVKGHYLLGQTLLQRN 96
               +  +G TL +  
Sbjct: 372 FADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 9/59 (15%), Positives = 16/59 (27%)

Query: 53  NRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
             A    +  D+   E  C +  + + D+     LL     Q             A+  
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 9e-10
 Identities = 20/78 (25%), Positives = 34/78 (43%)

Query: 197 EDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQ 256
           E++T A+  D     I   +  DPV+ PS         +       + DP  R PL   Q
Sbjct: 12  EEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71

Query: 257 LVPNLAIKEAVRAYMDKH 274
           + PN  +KE ++ ++ + 
Sbjct: 72  IRPNTELKEKIQRWLAER 89

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 6e-09
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 7/132 (5%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
           K+AE+L+   N YF    Y  AI  Y++AI L P+  IY+ NR+L +L+   +     D 
Sbjct: 8   KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 67

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELAR 131
            +AI+LD   +KG+Y    + +   ++   +++ E  + +    K       D   +   
Sbjct: 68  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK-------DAKMKYQE 120

Query: 132 AKYLLWEQESSK 143
              ++ ++   +
Sbjct: 121 CNKIVKQKAFER 132

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 1e-08
 Identities = 27/99 (27%), Positives = 45/99 (45%)

Query: 13  QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCR 72
           Q  +L+  GN   S      A+  Y+EAI L P+  + ++NR+  + K+ D+ K   D  
Sbjct: 2   QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 61

Query: 73  KAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
           K + L  D  KG+      L   N + +  +  E+ L  
Sbjct: 62  KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 100

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.1 bits (117), Expect = 1e-08
 Identities = 19/61 (31%), Positives = 25/61 (40%)

Query: 199 DTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLV 258
           D PA     + C+I   I  DPV T     + R  IL  L  +G + P  R P   + L 
Sbjct: 15  DFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE 74

Query: 259 P 259
            
Sbjct: 75  S 75

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 50.4 bits (120), Expect = 6e-08
 Identities = 15/90 (16%), Positives = 31/90 (34%)

Query: 24  YFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK 83
             S+ +   A++   EAI   P      ++         D+ + +    ++I+L  + + 
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 84  GHYLLGQTLLQRNEYADGIKELEKALNLGR 113
           G   L   +       D  +    A  LG 
Sbjct: 66  GASQLRHLVKAAQARKDFAQGAATAKVLGE 95

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 47.6 bits (112), Expect = 2e-07
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 22/148 (14%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLC---------------PNVPIYWTNRAL 56
           +QA  ++  G  YF   +Y  A+  Y + ++                   +   + N A+
Sbjct: 13  EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 72

Query: 57  CHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK 116
           C+LK  ++TK    C KA+ LD  + KG Y  G+  L  NE+     + EK L +     
Sbjct: 73  CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV----N 128

Query: 117 PKGYIVEDIWQELARAKYLLWEQESSKR 144
           P+    +    ++   +    E     R
Sbjct: 129 PQ---NKAARLQIFMCQKKAKEHNERDR 153

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 9e-07
 Identities = 18/143 (12%), Positives = 34/143 (23%), Gaps = 1/143 (0%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G     +     A+  +  A+   P     W        +        +  R+ ++L  D
Sbjct: 26  GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 85

Query: 81  SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQE 140
           +      L  +    +      + L   L     A        +     A          
Sbjct: 86  NQTALMALAVSFTNESLQRQACEILRDWLRY-TPAYAHLVTPAEEGAGGAGLGPSKRILG 144

Query: 141 SSKRSWELQSLKEACEAALEEKH 163
           S         +KE   AA+    
Sbjct: 145 SLLSDSLFLEVKELFLAAVRLDP 167

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 4e-05
 Identities = 21/160 (13%), Positives = 40/160 (25%), Gaps = 4/160 (2%)

Query: 36  AYTEAITLCPNVPI----YWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT 91
            Y +        P+          L  L+  D          A+Q D   ++    LG T
Sbjct: 3   TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTT 62

Query: 92  LLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSL 151
             +  +    I  L + L L    +     +   +   +  +          R     + 
Sbjct: 63  QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH 122

Query: 152 KEACEAALEEKHVLDISRKEGFLDEASSTHLKQMEALRQV 191
                        L  S++      + S  L+  E     
Sbjct: 123 LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA 162

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.8 bits (100), Expect = 9e-07
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 208 LCCKITLDIFRDPVITP-SGVTYERAVILDHLDKVGKFDPITREPLRESQLVP 259
           + C I+  + R PV++P S   +E++++  ++      DPIT EPL   ++V 
Sbjct: 1   MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVE 52

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 1e-06
 Identities = 10/54 (18%), Positives = 22/54 (40%)

Query: 206 DYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVP 259
            +  CKI  +  +D  I P G     + +    +  G+  P  R  ++ ++ + 
Sbjct: 22  TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 75

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 45.2 bits (105), Expect = 3e-06
 Identities = 17/123 (13%), Positives = 40/123 (32%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADC 71
           ++A+ L   G  Y S      A + +++A+ + P++P  +    +   +  ++       
Sbjct: 35  ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94

Query: 72  RKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELAR 131
              ++LD      H   G  L           +L            +   +    Q+L  
Sbjct: 95  DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE 154

Query: 132 AKY 134
            + 
Sbjct: 155 KQA 157

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 3e-06
 Identities = 14/83 (16%), Positives = 28/83 (33%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD 80
           G+    +++   A   Y  A  L P+    +   A+    + D         ++I +   
Sbjct: 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218

Query: 81  SVKGHYLLGQTLLQRNEYADGIK 103
                  L + L +  E  D +K
Sbjct: 219 FPAASTNLQKALSKALESRDEVK 241

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 9/79 (11%), Positives = 23/79 (29%), Gaps = 5/79 (6%)

Query: 33  AIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL 92
           +     +A  L  ++       A     R     ++   +K +  D +      +     
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQ---ALQDLYQKMLVTDLEYALDKKVEQ--D 59

Query: 93  LQRNEYADGIKELEKALNL 111
           L  + + + I  L+     
Sbjct: 60  LWNHAFKNQITTLQGQAKN 78

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 34/149 (22%), Positives = 54/149 (36%), Gaps = 23/149 (15%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEA----------------ITLCPNVPIYWTNRA 55
             +E L+  GN +F    +  AI  YT+                   L P       N  
Sbjct: 25  LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG 84

Query: 56  LCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA 115
            C LK +DW      C +A+++D  + K  Y   Q      EY   + +L+KA  +    
Sbjct: 85  ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 144

Query: 116 KPKGYIVEDIWQELARAKYLLWEQESSKR 144
           K        I  EL + K  +  Q+  ++
Sbjct: 145 K-------AIQAELLKVKQKIKAQKDKEK 166

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 30/148 (20%), Positives = 57/148 (38%), Gaps = 22/148 (14%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEA---------------ITLCPNVPIYWTNRAL 56
           +Q+  ++  G  YF + +Y  A+  Y +                            N A+
Sbjct: 11  EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 70

Query: 57  CHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAK 116
           CHLK   ++     C KA++LD ++ KG    G+  L  N++     + +K L L     
Sbjct: 71  CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL----Y 126

Query: 117 PKGYIVEDIWQELARAKYLLWEQESSKR 144
           P     +    +LA  +  +  Q + ++
Sbjct: 127 PNN---KAAKTQLAVCQQRIRRQLAREK 151

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 7/89 (7%), Positives = 13/89 (14%)

Query: 11  AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEAD 70
           A+   +  L             +     E         +                +    
Sbjct: 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY 298

Query: 71  CRKAIQLDHDSVKGHYLLGQTLLQRNEYA 99
                 +D         L    L  N   
Sbjct: 299 FSTLKAVDPMRAAYLDDLRSKFLLENSVL 327

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 16/116 (13%)

Query: 12  KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIY----------------WTNRA 55
           + A  ++ +GN +F K+    AI  Y EA+    +   +                  N A
Sbjct: 15  QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 74

Query: 56  LCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNL 111
            C+ K  D+ K      K +++D ++VK  Y LG   +      +  + L KA +L
Sbjct: 75  TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 2e-04
 Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 4/69 (5%)

Query: 203 EVPDYLCCKITLDIFRDP-VITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNL 261
            +   L C    +I R+P  +      +    + D +   G   P+   P     L  N 
Sbjct: 18  RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI---GTGCPVCYTPAWIQDLKINR 74

Query: 262 AIKEAVRAY 270
            +   ++  
Sbjct: 75  QLDSMIQLC 83

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 3e-04
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 4/59 (6%)

Query: 203 EVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNL 261
           E   +L C+      + P + P   T     +    +  G   PI + P       P L
Sbjct: 2   EEFQFLRCQQCQAEAKCPKLLPCLHTLCSGCL----EASGMQCPICQAPWPLGADTPAL 56

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (87), Expect = 7e-04
 Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 28/136 (20%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCP-------NVPIYWTNRALCHLKRNDWTKVEADCRK 73
            +      +Y  A D Y++ I           ++  Y+  + LC L   D        ++
Sbjct: 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224

Query: 74  AIQLD---HDSVKGHYL--LGQTLLQRN--EYADGIKELEKALNLGRGAKPKGYIVEDIW 126
               D    DS + ++L  L   + + +  + ++  KE +  + L            D W
Sbjct: 225 GQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL------------DKW 272

Query: 127 QE--LARAKYLLWEQE 140
           +   L + K  + +QE
Sbjct: 273 KITILNKIKESIQQQE 288

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 16/111 (14%), Positives = 29/111 (26%), Gaps = 10/111 (9%)

Query: 13  QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVP----IYWTNRALCHLKRNDWTKVE 68
            +   ++   Y+       AA +                   W N A   +   ++   E
Sbjct: 212 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 271

Query: 69  ADCRKAIQLDHDS------VKGHYLLGQTLLQRNEYADGIKELEKALNLGR 113
               +  +            +   LL Q   Q    +D  + L  AL L  
Sbjct: 272 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 9/79 (11%), Positives = 19/79 (24%), Gaps = 1/79 (1%)

Query: 21  GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN-DWTKVEADCRKAIQLDH 79
                  +R   A     +AI L       W  R +       D  +        I+   
Sbjct: 50  RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 109

Query: 80  DSVKGHYLLGQTLLQRNEY 98
            + +  +     +    + 
Sbjct: 110 KNYQVWHHRRVLVEWLRDP 128

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 16/143 (11%), Positives = 31/143 (21%), Gaps = 23/143 (16%)

Query: 13  QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIY------------WTNRALCHLK 60
            A     D         Y  A      A+ +   +P                  A     
Sbjct: 8   GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG 67

Query: 61  RNDWTKVEADCRKAIQ-----------LDHDSVKGHYLLGQTLLQRNEYADGIKELEKAL 109
              + +      KA+                 +   Y     L      A+ + E +K +
Sbjct: 68  LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127

Query: 110 NLGRGAKPKGYIVEDIWQELARA 132
            +    K +    E + +     
Sbjct: 128 EMIEERKGETPGKERMMEVAIDR 150

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	281
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.95
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.9
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.88
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.88
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.84
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.81
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.79
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.78
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.76
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.75
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.72
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.71
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.68
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.67
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.67
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.66
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.66
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.65
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.65
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.63
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.61
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.6
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.6
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.59
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.58
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.56
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.51
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.48
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.46
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.42
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.38
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.38
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.37
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.37
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.36
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.36
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.35
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.33
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.31
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.31
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.29
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.26
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.19
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.19
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.18
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.14
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.06
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.06
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.04
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.04
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.0
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.87
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.85
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.79
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.76
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.74
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.74
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.7
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.7
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.58
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.56
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.47
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.38
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.31
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.93
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.92
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.79
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.39
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	93.75
d1ibia2	31	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	90.67
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	89.33
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	88.02
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	87.32
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	86.28
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	84.36
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	83.47
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	81.04
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	81.04
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	80.54

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2e-29  Score=168.86  Aligned_cols=79  Identities=49%  Similarity=1.053  Sum_probs=75.7

Q ss_pred             CCCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHcCCCccC
Q 023501          202 AEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGWAYKA  280 (281)
Q Consensus       202 ~~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~~~~~~~  280 (281)
                      +++|++|.||||.++|.+||+++|||+||++||.+|+..++.+||+||.+++..++.||..|+++|++|+++|||++||
T Consensus         2 ~eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~~~~d~   80 (80)
T d2c2la2           2 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVEDY   80 (80)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSSCC
T ss_pred             CCCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCCCcCCC
Confidence            5789999999999999999999999999999999999877667999999999999999999999999999999999998

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=4.9e-25  Score=146.62  Aligned_cols=74  Identities=36%  Similarity=0.671  Sum_probs=70.4

Q ss_pred             CCCCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHcCC
Q 023501          203 EVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHGW  276 (281)
Q Consensus       203 ~~p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~~~  276 (281)
                      ++|++|.||||.++|.+||+++|||+||+.||++|+..+...||.|+.+++..+++||..|+++|++|+++||.
T Consensus         4 eiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~~   77 (78)
T d1t1ha_           4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI   77 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred             CCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhCc
Confidence            68999999999999999999999999999999999987766799999999999999999999999999999985

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.1e-23  Score=142.61  Aligned_cols=76  Identities=33%  Similarity=0.495  Sum_probs=69.6

Q ss_pred             CCCCCCCCcccccCCcccccCceecCCC-cccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHHHcC
Q 023501          199 DTPAEVPDYLCCKITLDIFRDPVITPSG-VTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMDKHG  275 (281)
Q Consensus       199 ~~~~~~p~~~~c~i~~~~~~~pv~~~~g-~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~~~~  275 (281)
                      +...++|++|.||||+.+|.|||+++|| |+||+.||.+||..+. +||+|+++++..+|+||..|++.|++|++++.
T Consensus        14 ~~~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~-~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~   90 (98)
T d1wgma_          14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMDQIRPNTELKEKIQRWLAERK   90 (98)
T ss_dssp             CCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSC-BCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred             hhhcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcC-CcccccccccchhhcchHHHHHHHHHHHHHHH
Confidence            3456889999999999999999999977 5999999999998766 59999999999999999999999999998864

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.7e-21  Score=152.92  Aligned_cols=106  Identities=40%  Similarity=0.666  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL   92 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~   92 (281)
                      .++.+++.|+.+++.|+|++|+..|++||.++|.++.+|.++|.||.++|+|++|+.++++|++++|+++.+|+++|.+|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            47789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcChHHHHHHHHHHHhhccCCCCC
Q 023501           93 LQRNEYADGIKELEKALNLGRGAKPK  118 (281)
Q Consensus        93 ~~~g~~~~A~~~~~kal~~~p~~~~~  118 (281)
                      ..+|++++|+..|++++.++|.....
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~~~  108 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQRLN  108 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHH
Confidence            99999999999999999999874443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.1e-20  Score=135.98  Aligned_cols=102  Identities=26%  Similarity=0.357  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL   92 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~   92 (281)
                      .+..++..|+.++..|+|++|+..|+++|..+|+++.+|.++|.+|..+|++++|+.++.++++++|+++.+|+.+|.++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcChHHHHHHHHHHHhhccC
Q 023501           93 LQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        93 ~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ..+|++++|+..|+++++++|+
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p~  103 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEAN  103 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHccCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999887

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.2e-19  Score=136.12  Aligned_cols=105  Identities=29%  Similarity=0.500  Sum_probs=102.1

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG   89 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la   89 (281)
                      +-+.|+.++..|+.+++.|+|++|+..|++++.++|+++.+|.++|.||+.+|++++|+.+++++++++|.++.+++.+|
T Consensus         6 ~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g   85 (159)
T d1a17a_           6 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA   85 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHH
Confidence            44778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcChHHHHHHHHHHHhhccC
Q 023501           90 QTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        90 ~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      .++..+|++++|+..+++++.++|.
T Consensus        86 ~~~~~~g~~~eA~~~~~~a~~~~p~  110 (159)
T d1a17a_          86 ASNMALGKFRAALRDYETVVKVKPH  110 (159)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999876

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.81  E-value=9.3e-19  Score=131.82  Aligned_cols=109  Identities=25%  Similarity=0.313  Sum_probs=100.1

Q ss_pred             hhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----------------hHHHHHHHHHHHHhcCHHHHHH
Q 023501            6 GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV----------------PIYWTNRALCHLKRNDWTKVEA   69 (281)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~~a~~~~~~~~~~~A~~   69 (281)
                      ......+.+..++..|+.+|+.|+|.+|+..|++|+...+..                ..++.|+|.||+++|+|++|+.
T Consensus         9 ~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~   88 (153)
T d2fbna1           9 TDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAID   88 (153)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhh
Confidence            334455678889999999999999999999999999886642                3588999999999999999999


Q ss_pred             HHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           70 DCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        70 ~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ++++|++++|.++++|+++|.++..+|++++|+..|.++++++|+
T Consensus        89 ~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  133 (153)
T d2fbna1          89 HASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN  133 (153)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             hhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999887

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.2e-18  Score=131.12  Aligned_cols=104  Identities=25%  Similarity=0.414  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---------------hHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV---------------PIYWTNRALCHLKRNDWTKVEADCRKAI   75 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al   75 (281)
                      -+.+..+++.|+.+|+.|+|++|+..|++||...|..               ..+|.|+|.||+++|+|++|+.++++||
T Consensus        10 ~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al   89 (170)
T d1p5qa1          10 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL   89 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence            3468889999999999999999999999999998763               3678899999999999999999999999


Q ss_pred             hhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           76 QLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        76 ~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      +++|+++.+++++|.++..+|++++|+..|+++++++|+
T Consensus        90 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~  128 (170)
T d1p5qa1          90 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN  128 (170)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred             hccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999887

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.9e-18  Score=125.13  Aligned_cols=103  Identities=27%  Similarity=0.413  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchh-------H
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVK-------G   84 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~-------a   84 (281)
                      +.|..++++|+.++..|+|++|+.+|+++++++|+++.++.++|.+|.++|+|++|+.++++|++++|.+..       +
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~   81 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999999999999999999999998754       6


Q ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           85 HYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      |+.+|.++..++++++|+..|.+++...+.
T Consensus        82 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            667778888888999999999999988554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.78  E-value=5.9e-18  Score=129.34  Aligned_cols=105  Identities=29%  Similarity=0.442  Sum_probs=98.0

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---------------chHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN---------------VPIYWTNRALCHLKRNDWTKVEADCRKA   74 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a   74 (281)
                      ..+.+..+...|+.+|+.|+|.+|+..|++|+...|.               ...+|.|+|.||+++|+|++|+.+++++
T Consensus        11 ~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~a   90 (168)
T d1kt1a1          11 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA   90 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhh
Confidence            4467899999999999999999999999999987544               2467899999999999999999999999


Q ss_pred             HhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           75 IQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        75 l~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ++++|.+.++++++|.++..+|++++|+..|.+++.++|+
T Consensus        91 l~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~  130 (168)
T d1kt1a1          91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ  130 (168)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT
T ss_pred             hhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999887

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=1e-17  Score=128.13  Aligned_cols=104  Identities=26%  Similarity=0.426  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL----------------CPNVPIYWTNRALCHLKRNDWTKVEADCRKA   74 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   74 (281)
                      ...+..++..|+.++..|+|.+|+..|++++..                +|..+.++.++|.||.++|+|++|+.++++|
T Consensus        24 ~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a  103 (169)
T d1ihga1          24 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  103 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhh
Confidence            345677889999999999999999999999864                4556789999999999999999999999999


Q ss_pred             HhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           75 IQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        75 l~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ++++|.++++|+++|.++..+|++++|+..|+++++++|+
T Consensus       104 l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~  143 (169)
T d1ihga1         104 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE  143 (169)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999887

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.6e-17  Score=134.80  Aligned_cols=106  Identities=14%  Similarity=0.134  Sum_probs=103.4

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLL   88 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (281)
                      .++..+..+..+|..++..|+|++|+..|++++.++|+++.+|.++|.+|..+|++++|+..++++++++|+++.+++.+
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  111 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  111 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHH
Confidence            47789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           89 GQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        89 a~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      |.++..+|++++|+..|+++++++|.
T Consensus       112 g~~~~~~g~~~~A~~~~~~al~~~p~  137 (259)
T d1xnfa_         112 GIALYYGGRDKLAQDDLLAFYQDDPN  137 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999876

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.72  E-value=5.4e-17  Score=115.38  Aligned_cols=96  Identities=15%  Similarity=0.096  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL   93 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~   93 (281)
                      ....+.+|..+++.|++++|+..|++++..+|+++.+|.++|.++..+|++++|+.++++|++++|.++.+++.+|.+|.
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcChHHHHHHHHHHH
Q 023501           94 QRNEYADGIKELEKAL  109 (281)
Q Consensus        94 ~~g~~~~A~~~~~kal  109 (281)
                      .+|++++|++.+++.|
T Consensus        96 ~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          96 NEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHh
Confidence            9999999999999876

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.1e-17  Score=128.98  Aligned_cols=148  Identities=20%  Similarity=0.147  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL   92 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~   92 (281)
                      .+..+++.|..++..|+|++|+..|++   +.|.++.+|+|+|.+|+.+|++++|+.+|++|++++|+++.+|+.+|.++
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~   80 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            456777899999999999999999986   45678899999999999999999999999999999999999999999999


Q ss_pred             HHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023501           93 LQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKH  163 (281)
Q Consensus        93 ~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (281)
                      ..+|++++|+..|++++...+.+....+....+...+...+.....+....+.+++.++...+..++...+
T Consensus        81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~  151 (192)
T d1hh8a_          81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  151 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            99999999999999999887654322111000000000011222334445566778888888888776543

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=4.2e-18  Score=104.63  Aligned_cols=52  Identities=31%  Similarity=0.568  Sum_probs=47.4

Q ss_pred             ccccCCcccccCceec-CCCcccccchHHhHhccCCCCCCCCCCCcCCCCCccc
Q 023501          208 LCCKITLDIFRDPVIT-PSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPN  260 (281)
Q Consensus       208 ~~c~i~~~~~~~pv~~-~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n  260 (281)
                      +.||||+++|.+||++ .|||+||++||.+|+.+++ .||+||++++..+|+|.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~-~CP~c~~~l~~~dLipi   53 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG-NDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS-BCTTTCCBCCGGGCEEC
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhcc-CCCccCCcCCHHhceeC
Confidence            4799999999999987 5999999999999999887 49999999999888774

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=6.5e-18  Score=112.45  Aligned_cols=62  Identities=27%  Similarity=0.398  Sum_probs=52.2

Q ss_pred             CCcccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCc-ccHHHHHH
Q 023501          205 PDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLV-PNLAIKEA  266 (281)
Q Consensus       205 p~~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~-~n~~l~~~  266 (281)
                      ...+.||||.++|.+||+++|||+||+.||.+|++..+..||.||.++...++. |...+.+.
T Consensus        21 ~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~   83 (86)
T d1rmda2          21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNI   83 (86)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHH
T ss_pred             ccCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHH
Confidence            345789999999999999999999999999999986665699999999977765 55555444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.4e-16  Score=114.83  Aligned_cols=99  Identities=11%  Similarity=0.008  Sum_probs=90.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH---hcCHHHHHHHHHHHHhhcCcc--hhHHHHHHHHH
Q 023501           18 RLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLK---RNDWTKVEADCRKAIQLDHDS--VKGHYLLGQTL   92 (281)
Q Consensus        18 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~l~p~~--~~a~~~la~~~   92 (281)
                      .++++.+...+++++|.+.|.+++..+|.++.+++|+|.|+.+   .+++++|+..+++++..+|.+  ..+++.+|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999986   456778999999999999765  56999999999


Q ss_pred             HHhcChHHHHHHHHHHHhhccCCC
Q 023501           93 LQRNEYADGIKELEKALNLGRGAK  116 (281)
Q Consensus        93 ~~~g~~~~A~~~~~kal~~~p~~~  116 (281)
                      ..+|++++|+.+|+++++++|++.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~  106 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNN  106 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCH
Confidence            999999999999999999998743

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.5e-17  Score=115.96  Aligned_cols=66  Identities=18%  Similarity=0.367  Sum_probs=58.1

Q ss_pred             cccccCCcccccCceecCCCcccccchHHhHhccCC--CCCCCCCCCcCCCCCcccHHHHHHHHHHHH
Q 023501          207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVG--KFDPITREPLRESQLVPNLAIKEAVRAYMD  272 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~--~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~  272 (281)
                      .+.||||.++|.+||+++|||+||+.||..|+....  ..||+||.+++..++.+|..+.++|+.+.+
T Consensus        21 ~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~   88 (103)
T d1jm7a_          21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (103)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             CcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence            457999999999999999999999999999996543  359999999999999999888888887753

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.66  E-value=1.1e-15  Score=114.94  Aligned_cols=113  Identities=13%  Similarity=0.075  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc-
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------------PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD-   80 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-   80 (281)
                      +..+...|+.++..|+|++|+..|++|+++.|..            +.+|.++|.+|..+|+|++|+.++++++++.|. 
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            3444455999999999999999999999998764            468999999999999999999999999988653 


Q ss_pred             ----------chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHH
Q 023501           81 ----------SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIW  126 (281)
Q Consensus        81 ----------~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~  126 (281)
                                ...+++++|.+|..+|++++|+..|++++++.|...........+.
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~  144 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM  144 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHH
Confidence                      3558999999999999999999999999999887555533333343

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6e-16  Score=129.90  Aligned_cols=142  Identities=11%  Similarity=-0.012  Sum_probs=117.8

Q ss_pred             hhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCcchhHH
Q 023501            7 LAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN-DWTKVEADCRKAIQLDHDSVKGH   85 (281)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~   85 (281)
                      +..+|+.++++..+|..+.+.+.+++|+..|++||+++|.+..+|.+||.++..+| ++++|+.+++++++++|++..+|
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~  115 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  115 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence            34578899999999999999999999999999999999999999999999999887 59999999999999999999999


Q ss_pred             HHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501           86 YLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus        86 ~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      +.+|.++..+|++++|+..+.++++++|.+..       ++..++         ......+++.++...+.++++.++.
T Consensus       116 ~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~-------a~~~~~---------~~~~~~~~~~~Al~~~~~al~~~p~  178 (315)
T d2h6fa1         116 HHRRVLVEWLRDPSQELEFIADILNQDAKNYH-------AWQHRQ---------WVIQEFKLWDNELQYVDQLLKEDVR  178 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH-------HHHHHH---------HHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HHHhHHHHhhccHHHHHHHHhhhhhhhhcchH-------HHHHHH---------HHHHHHHhhHHHHHHHHHHHHHCCc
Confidence            99999999999999999999999999887332       222222         2223345566677777777776654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.7e-16  Score=129.61  Aligned_cols=153  Identities=8%  Similarity=-0.022  Sum_probs=125.6

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKD-RYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHD   80 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~   80 (281)
                      +++.++..+|+...+|..+|.++...| ++++|+.+|.+++..+|+++.+|.++|.++..+|++++|+.+++++++++|.
T Consensus        65 ~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~  144 (315)
T d2h6fa1          65 LTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK  144 (315)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc
Confidence            456788889999999999999999876 5999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALE  160 (281)
Q Consensus        81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  160 (281)
                      +..+|+.+|.++..+|++++|+..+.++++++|.+...       +..++.+.   .........+...++...+.++++
T Consensus       145 n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a-------~~~r~~~l---~~~~~~~~~~~~~~ai~~~~~al~  214 (315)
T d2h6fa1         145 NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSV-------WNQRYFVI---SNTTGYNDRAVLEREVQYTLEMIK  214 (315)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHH-------HHHHHHHH---HHTTCSCSHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHH-------HHHHHHHH---HHccccchhhhhHHhHHHHHHHHH
Confidence            99999999999999999999999999999998873332       11111111   111112234555666777777777


Q ss_pred             Hhhh
Q 023501          161 EKHV  164 (281)
Q Consensus       161 ~~~~  164 (281)
                      ..|.
T Consensus       215 ~~P~  218 (315)
T d2h6fa1         215 LVPH  218 (315)
T ss_dssp             HSTT
T ss_pred             hCCC
Confidence            6654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.2e-15  Score=116.36  Aligned_cols=103  Identities=13%  Similarity=0.137  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc----------
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS----------   81 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----------   81 (281)
                      ..+..+.++|.+++..|+|++|+..|++|++++|+++.+|+++|.+|.++|++++|+.++++|+...|.+          
T Consensus        34 ~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~  113 (192)
T d1hh8a_          34 PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL  113 (192)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred             CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhh
Confidence            4567899999999999999999999999999999999999999999999999999999999999875432          


Q ss_pred             ------hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           82 ------VKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        82 ------~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                            .++++.+|.++..+|++++|++.+.+++.+.|.
T Consensus       114 ~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_         114 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence                  477899999999999999999999999999776

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.2e-15  Score=124.95  Aligned_cols=105  Identities=20%  Similarity=0.345  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL   92 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~   92 (281)
                      .+..+..+|..+...|++++|+..|++++..+|+++.+|.++|.+|..+|++++|+..++++++++|+++.+++.+|.++
T Consensus       171 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  250 (323)
T d1fcha_         171 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  250 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcChHHHHHHHHHHHhhccCCCC
Q 023501           93 LQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        93 ~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      ..+|++++|+..|+++++++|++..
T Consensus       251 ~~~g~~~~A~~~~~~al~l~p~~~~  275 (323)
T d1fcha_         251 INLGAHREAVEHFLEALNMQRKSRG  275 (323)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred             HHCCCHHHHHHHHHHHHHhCCcChh
Confidence            9999999999999999999998544

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.2e-16  Score=106.83  Aligned_cols=64  Identities=17%  Similarity=0.241  Sum_probs=57.1

Q ss_pred             CcccccCCcccccCcee-cCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcccHHHHHHHHHHHH
Q 023501          206 DYLCCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKEAVRAYMD  272 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~n~~l~~~i~~~~~  272 (281)
                      ..+.||||.++|.+||+ ++|||+||+.||.+|+.  . .||.||.++...++.+|..|..+|+.|..
T Consensus        21 ~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~-~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~   85 (97)
T d1jm7b_          21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--T-GCPVCYTPAWIQDLKINRQLDSMIQLCSK   85 (97)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--T-BCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred             hcCCCccCCchhhcCceeCCCCCchhHHHHHHHHh--c-cccccCCcCchhhCcccHHHHHHHHHHHH
Confidence            35789999999999996 58999999999999984  2 39999999999999999999999998843

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.9e-14  Score=118.97  Aligned_cols=101  Identities=12%  Similarity=0.083  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 023501           15 EQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ   94 (281)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~   94 (281)
                      ...+.+|..+++.|+|++|+..|+++++.+|+++.+|.++|.++..+|++++|+..+.++++++|++..+++.+|.++..
T Consensus        20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN   99 (323)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccc
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcChHHHHHHHHHHHhhccCC
Q 023501           95 RNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        95 ~g~~~~A~~~~~kal~~~p~~  115 (281)
                      +|++++|+..+.+++.+.|..
T Consensus       100 ~~~~~~A~~~~~~~~~~~~~~  120 (323)
T d1fcha_         100 ESLQRQACEILRDWLRYTPAY  120 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTT
T ss_pred             cccccccccchhhHHHhccch
Confidence            999999999999999998763

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.59  E-value=2.7e-15  Score=111.42  Aligned_cols=94  Identities=7%  Similarity=-0.019  Sum_probs=85.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc----------CHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501           21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRN----------DWTKVEADCRKAIQLDHDSVKGHYLLGQ   90 (281)
Q Consensus        21 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~----------~~~~A~~~~~~al~l~p~~~~a~~~la~   90 (281)
                      +..+-+.+.|++|+..|++|++++|+++.+++++|.++..++          .+++|+..+++|++++|+++.+++.+|.
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~   83 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN   83 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHH
Confidence            344566778999999999999999999999999999998654          4689999999999999999999999999


Q ss_pred             HHHHhcC-----------hHHHHHHHHHHHhhccC
Q 023501           91 TLLQRNE-----------YADGIKELEKALNLGRG  114 (281)
Q Consensus        91 ~~~~~g~-----------~~~A~~~~~kal~~~p~  114 (281)
                      +|..+|+           |++|+..|++++.++|+
T Consensus        84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~  118 (145)
T d1zu2a1          84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD  118 (145)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHcccchhhHHHHHHhHHHhhhhhhcccccCCC
Confidence            9998864           79999999999999887

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.4e-15  Score=126.39  Aligned_cols=110  Identities=17%  Similarity=0.182  Sum_probs=67.5

Q ss_pred             hhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501            5 AGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG   84 (281)
Q Consensus         5 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (281)
                      +++...|+.+..+..+|..+...|++.+|+..|..++...|.++..+..+|.++...|++++|+..++++++++|+++.+
T Consensus       262 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  341 (388)
T d1w3ba_         262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA  341 (388)
T ss_dssp             HHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            34444455555555666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           85 HYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ++.+|.++..+|++++|+..|+++++++|+
T Consensus       342 ~~~la~~~~~~g~~~~A~~~~~~al~l~P~  371 (388)
T d1w3ba_         342 HSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            666666666666666666666666666554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.2e-14  Score=122.81  Aligned_cols=108  Identities=19%  Similarity=0.163  Sum_probs=56.1

Q ss_pred             hhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHH
Q 023501            6 GLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGH   85 (281)
Q Consensus         6 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~   85 (281)
                      ++...|+.+..+..+|..+...|+|++|+..|.+++...|..+..+.++|.++...|++++|+..++++++++|+++.++
T Consensus       195 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  274 (388)
T d1w3ba_         195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY  274 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred             HHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            33444444555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHhcChHHHHHHHHHHHhhcc
Q 023501           86 YLLGQTLLQRNEYADGIKELEKALNLGR  113 (281)
Q Consensus        86 ~~la~~~~~~g~~~~A~~~~~kal~~~p  113 (281)
                      +.+|.++..+|++++|+..+.+++...|
T Consensus       275 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~  302 (388)
T d1w3ba_         275 CNLANALKEKGSVAEAEDCYNTALRLCP  302 (388)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence            5555555555555555555555555443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.1e-14  Score=100.94  Aligned_cols=92  Identities=10%  Similarity=0.052  Sum_probs=86.7

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      ++..++..+|..+..+..+|.+++..|+|++|+..|.+++.++|+++.+|.++|.++..+|++++|+..++++++++|++
T Consensus        25 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~  104 (117)
T d1elwa_          25 CYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN  104 (117)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            35667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHH
Q 023501           82 VKGHYLLGQTLL   93 (281)
Q Consensus        82 ~~a~~~la~~~~   93 (281)
                      +.++..++.+..
T Consensus       105 ~~~~~~l~~l~~  116 (117)
T d1elwa_         105 PQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC
Confidence            999999887653

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=7e-14  Score=95.84  Aligned_cols=83  Identities=13%  Similarity=0.009  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPN-------VPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHY   86 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~   86 (281)
                      ++..+++|..+++.|+|.+|+.+|++|+.+.|.       .+.++.++|.++.++|++++|+..+++|++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            567889999999999999999999999998654       3689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 023501           87 LLGQTLLQRN   96 (281)
Q Consensus        87 ~la~~~~~~g   96 (281)
                      +++.....++
T Consensus        85 Nl~~~~~~l~   94 (95)
T d1tjca_          85 NLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9987665543

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.1e-14  Score=95.78  Aligned_cols=49  Identities=20%  Similarity=0.295  Sum_probs=43.8

Q ss_pred             ccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCC
Q 023501          208 LCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQ  256 (281)
Q Consensus       208 ~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~  256 (281)
                      ..||||.+.+.+||+++|||+||+.||..|+..+...||+||.++...+
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            4699999999999999999999999999999865556999999998653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.1e-13  Score=101.56  Aligned_cols=103  Identities=13%  Similarity=0.117  Sum_probs=92.2

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      .+.+++..+|+.+..+..+|..++..|++++|+..|.++++++|.++.+|.++|.++..+|++++|+.+++++++++|++
T Consensus        32 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~  111 (159)
T d1a17a_          32 FYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD  111 (159)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            35677888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHH--hcChHHHHHH
Q 023501           82 VKGHYLLGQTLLQ--RNEYADGIKE  104 (281)
Q Consensus        82 ~~a~~~la~~~~~--~g~~~~A~~~  104 (281)
                      +.++..++.+...  .+.+++|+..
T Consensus       112 ~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_         112 KDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999888877543  3445666544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.46  E-value=5.7e-13  Score=101.12  Aligned_cols=94  Identities=15%  Similarity=0.067  Sum_probs=87.1

Q ss_pred             hchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHH
Q 023501            8 AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYL   87 (281)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~   87 (281)
                      ...|..+..+.++|..+++.|+|++|+..|+++|+++|+++.+|+++|.+|..+|++++|+.++++|++++|++..++..
T Consensus        71 ~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~  150 (169)
T d1ihga1          71 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE  150 (169)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcChHHH
Q 023501           88 LGQTLLQRNEYADG  101 (281)
Q Consensus        88 la~~~~~~g~~~~A  101 (281)
                      ++.+...+....++
T Consensus       151 l~~~~~~l~~~~~~  164 (169)
T d1ihga1         151 LLKVKQKIKAQKDK  164 (169)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99988877666554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=2.3e-12  Score=103.78  Aligned_cols=110  Identities=15%  Similarity=0.054  Sum_probs=99.0

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcch
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSV   82 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~   82 (281)
                      +++++..+|+.+.++..+|..+...|++++|+..|++++.++|+++.++.++|.+|..+|++++|+..++++++++|.+.
T Consensus        60 ~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  139 (259)
T d1xnfa_          60 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  139 (259)
T ss_dssp             HHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccH
Confidence            45677788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhhc
Q 023501           83 KGHYLLGQTLLQRNEYADGIKELEKALNLG  112 (281)
Q Consensus        83 ~a~~~la~~~~~~g~~~~A~~~~~kal~~~  112 (281)
                      ..+..++.++...+..+.+...........
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (259)
T d1xnfa_         140 FRSLWLYLAEQKLDEKQAKEVLKQHFEKSD  169 (259)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence            999999998888887766666555555543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5.5e-12  Score=95.71  Aligned_cols=91  Identities=19%  Similarity=0.124  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 023501           12 KQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQT   91 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~   91 (281)
                      -....+.++|.++++.|+|++|+.+++++|.++|+++.+++++|.||..+|+|++|+.++++|++++|+++.+...++.+
T Consensus        60 ~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~  139 (170)
T d1p5qa1          60 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  139 (170)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34556778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcChHHHH
Q 023501           92 LLQRNEYADGI  102 (281)
Q Consensus        92 ~~~~g~~~~A~  102 (281)
                      ...+++..+..
T Consensus       140 ~~~~~~~~~~e  150 (170)
T d1p5qa1         140 QQRIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88877665543

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=9.3e-14  Score=84.38  Aligned_cols=49  Identities=18%  Similarity=0.173  Sum_probs=41.8

Q ss_pred             cccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCCcc
Q 023501          207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVP  259 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~~~  259 (281)
                      .+.|+||.+.+.+||++||||+||+.||.+|   +. .||+||.+++...-.|
T Consensus         6 ~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~---~~-~CP~Cr~~~~~~~~~~   54 (56)
T d1bora_           6 FLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GM-QCPICQAPWPLGADTP   54 (56)
T ss_dssp             CSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SS-SCSSCCSSSSCCSSCC
T ss_pred             CCCCcccCcccCCCEEecCCCHHhHHHHHcC---CC-cCcCCCCcccCCCCCC
Confidence            4689999999999999999999999999765   33 5999999998665443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.37  E-value=6.3e-12  Score=95.14  Aligned_cols=100  Identities=11%  Similarity=0.117  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQ   90 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~   90 (281)
                      +..+..+.++|.++++.|+|.+|+..+++++.++|+++.+|+++|.+|..+|+|++|+.++.++++++|++..++..++.
T Consensus        61 ~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  140 (168)
T d1kt1a1          61 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFM  140 (168)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             hhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34556778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcChHH-HHHHHHHHHh
Q 023501           91 TLLQRNEYAD-GIKELEKALN  110 (281)
Q Consensus        91 ~~~~~g~~~~-A~~~~~kal~  110 (281)
                      +...++.+.+ ..+.|.+.++
T Consensus       141 ~~~~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         141 CQKKAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHh
Confidence            9888876654 3444444443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.2e-11  Score=89.24  Aligned_cols=105  Identities=14%  Similarity=0.103  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHH
Q 023501           48 PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQ  127 (281)
Q Consensus        48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~  127 (281)
                      +..+-++|.+++..|+|++|+..|+++++++|.++.+++.+|.+|..+|+|++|+..+.+++.++|...........   
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~---   80 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK---   80 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH---
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHH---
Confidence            44567899999999999999999999999999999999999999999999999999999999999886654222222   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501          128 ELARAKYLLWEQESSKRSWELQSLKEACEAALEE  161 (281)
Q Consensus       128 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (281)
                            .....+......+.++++...+.+++..
T Consensus        81 ------~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          81 ------AYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             ------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence                  2233344444556677777777777764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=4.1e-13  Score=104.20  Aligned_cols=98  Identities=11%  Similarity=0.023  Sum_probs=85.3

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      .+.+++...|..+..+..+|.+|++.|+|++|+..|.+|+.++|+++.+|.++|.+|..+|+|++|+.++++|++++|.+
T Consensus        26 ~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          26 CYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            35667888899999999999999999999999999999999999999999999999999999999999999999999977


Q ss_pred             hhHHHHHHHHHHHhcChH
Q 023501           82 VKGHYLLGQTLLQRNEYA   99 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~   99 (281)
                      ...+...+......+...
T Consensus       106 ~~~~~~~~~~~l~~~~~~  123 (201)
T d2c2la1         106 RLNFGDDIPSALRIAKKK  123 (201)
T ss_dssp             TCCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            665555555555444333

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.36  E-value=1.2e-12  Score=96.83  Aligned_cols=99  Identities=14%  Similarity=-0.000  Sum_probs=86.1

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC---------
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSK----------DRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRND---------   63 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~---------   63 (281)
                      ++.++..+|+++.++..+|.+++..          +.+++|+..|++|++++|+++.+|+++|.+|..+|+         
T Consensus        20 ~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~   99 (145)
T d1zu2a1          20 AENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAK   99 (145)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHH
Confidence            5678888999999999999999854          556899999999999999999999999999988764         


Q ss_pred             --HHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHH
Q 023501           64 --WTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADG  101 (281)
Q Consensus        64 --~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A  101 (281)
                        |++|+..+++|++++|++..++..++.+....+.+.++
T Consensus       100 ~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         100 HNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence              79999999999999999999999888876555444443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.35  E-value=3.8e-12  Score=94.88  Aligned_cols=84  Identities=12%  Similarity=0.030  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Q 023501           14 AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLL   93 (281)
Q Consensus        14 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~   93 (281)
                      ...+.++|..+++.|+|++|+.+|++++.++|.++.+|+++|.+|..+|+|++|+.+++++++++|++..+...++.+..
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999998888776


Q ss_pred             HhcC
Q 023501           94 QRNE   97 (281)
Q Consensus        94 ~~g~   97 (281)
                      .+++
T Consensus       147 kl~~  150 (153)
T d2fbna1         147 KLKE  150 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.33  E-value=1.4e-11  Score=86.75  Aligned_cols=95  Identities=15%  Similarity=0.024  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCcchHHHHHHH
Q 023501           49 IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQE  128 (281)
Q Consensus        49 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~  128 (281)
                      ..++++|.++++.|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|.++++++|....       +   
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-------a---   86 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA-------V---   86 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------H---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccccc-------c---
Confidence            446789999999999999999999999999999999999999999999999999999999999887322       2   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501          129 LARAKYLLWEQESSKRSWELQSLKEACEAAL  159 (281)
Q Consensus       129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (281)
                            ....+......+++.++.+.+++.|
T Consensus        87 ------~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          87 ------HAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------hHHHHHHHHHCCCHHHHHHHHHHHh
Confidence                  2233334445577777777776654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.31  E-value=3.5e-11  Score=91.86  Aligned_cols=103  Identities=10%  Similarity=-0.036  Sum_probs=95.2

Q ss_pred             hchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----------------------hHHHHHHHHHHHHhcCHH
Q 023501            8 AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV----------------------PIYWTNRALCHLKRNDWT   65 (281)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~   65 (281)
                      ..+....+.+...|..+...|++++|+..|.+|+.+.+++                      ..++.+++.++..+|+++
T Consensus         5 ~~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~   84 (179)
T d2ff4a2           5 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS   84 (179)
T ss_dssp             GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence            3456778899999999999999999999999999997753                      257899999999999999


Q ss_pred             HHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Q 023501           66 KVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALN  110 (281)
Q Consensus        66 ~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~  110 (281)
                      +|+.++++++.++|.+..+|..++.++..+|++.+|+..|+++..
T Consensus        85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999854

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.7e-12  Score=92.97  Aligned_cols=94  Identities=10%  Similarity=-0.044  Sum_probs=82.1

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKD---RYGAAIDAYTEAITLCPNV--PIYWTNRALCHLKRNDWTKVEADCRKAIQL   77 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   77 (281)
                      .+.++..+|..+..++++|..+++.+   ++++|+..|++++..+|.+  +.+++++|.+|.++|+|++|+.++++++++
T Consensus        22 Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          22 FQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            45677778899999999999998754   5667999999999998865  458999999999999999999999999999


Q ss_pred             cCcchhHHHHHHHHHHHhc
Q 023501           78 DHDSVKGHYLLGQTLLQRN   96 (281)
Q Consensus        78 ~p~~~~a~~~la~~~~~~g   96 (281)
                      +|++..+...++.+...++
T Consensus       102 ~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_         102 EPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             CTTCHHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHHc
Confidence            9999999998888766543

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.5e-13  Score=84.01  Aligned_cols=52  Identities=19%  Similarity=0.181  Sum_probs=41.6

Q ss_pred             CcccccCCccccc-Cc----eecCCCcccccchHHhHhccCCCCCCCCCCCcCCCCC
Q 023501          206 DYLCCKITLDIFR-DP----VITPSGVTYERAVILDHLDKVGKFDPITREPLRESQL  257 (281)
Q Consensus       206 ~~~~c~i~~~~~~-~p----v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~~~~  257 (281)
                      ++..||||.+.+. .|    ++++|||+||..||.+|+..+...||+||+++...++
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence            3567999987653 22    5789999999999999997655569999999976554

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.26  E-value=1.6e-12  Score=82.75  Aligned_cols=44  Identities=16%  Similarity=0.226  Sum_probs=39.5

Q ss_pred             cccCCcccccCcee-cCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501          209 CCKITLDIFRDPVI-TPSGVTYERAVILDHLDKVGKFDPITREPLR  253 (281)
Q Consensus       209 ~c~i~~~~~~~pv~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~  253 (281)
                      .||||.+.+.+|++ ++|||+||..||.+|+..+. .||+||.++.
T Consensus         7 ~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~-~CP~CR~~i~   51 (68)
T d1chca_           7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP-TCPLCKVPVE   51 (68)
T ss_dssp             CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSC-STTTTCCCCC
T ss_pred             CCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhCC-cCCCCCcchH
Confidence            49999999988765 89999999999999999876 5999999876

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=1.5e-10  Score=95.15  Aligned_cols=142  Identities=12%  Similarity=0.091  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc---
Q 023501           11 AKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLC------PNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS---   81 (281)
Q Consensus        11 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---   81 (281)
                      ++.++.+...|+.|...|+|++|+..|.+|+++.      +..+.+|.++|.||.++|++++|+..+++++++.+..   
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~  113 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF  113 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence            4557889999999999999999999999999873      2345789999999999999999999999999987655   


Q ss_pred             ---hhHHHHHHHHHHH-hcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           82 ---VKGHYLLGQTLLQ-RNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEA  157 (281)
Q Consensus        82 ---~~a~~~la~~~~~-~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (281)
                         ..++..+|.++.. .|++++|+..|.+++.+.+..+.. .....         .....+......+++.++...+.+
T Consensus       114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~-~~~~~---------~~~~la~~~~~~g~y~~A~~~~~~  183 (290)
T d1qqea_         114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV-ALSNK---------CFIKCADLKALDGQYIEASDIYSK  183 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH-HHHHH---------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCch-hhhhh---------HHHHHHHHHHHcChHHHHHHHHHH
Confidence               6788899998865 699999999999999986653221 01111         222334445566788888888888


Q ss_pred             HHHHh
Q 023501          158 ALEEK  162 (281)
Q Consensus       158 ~l~~~  162 (281)
                      ++...
T Consensus       184 ~~~~~  188 (290)
T d1qqea_         184 LIKSS  188 (290)
T ss_dssp             HHHTT
T ss_pred             HHHhC
Confidence            87654

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.3e-12  Score=75.94  Aligned_cols=47  Identities=15%  Similarity=0.157  Sum_probs=39.1

Q ss_pred             ccccCCcccccC----ceecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501          208 LCCKITLDIFRD----PVITPSGVTYERAVILDHLDKVGKFDPITREPLRE  254 (281)
Q Consensus       208 ~~c~i~~~~~~~----pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~  254 (281)
                      +.||||.+-|..    +++++|||+||+.||.+|+......||+||+++..
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            469999988754    44578999999999999998665569999999875

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.9e-11  Score=81.77  Aligned_cols=68  Identities=13%  Similarity=0.056  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc-------hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           48 PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS-------VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-------~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      +.-++.+|.++++.|+|++|+.++++|+++.|.+       ..++..+|.++..+|++++|+..|+++++++|+.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~   79 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH   79 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC
Confidence            4567899999999999999999999999997653       6789999999999999999999999999998874

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=4.4e-10  Score=93.89  Aligned_cols=98  Identities=11%  Similarity=-0.032  Sum_probs=83.3

Q ss_pred             hhhhhhchHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCchHHH-HHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYYFSKD--RYGAAIDAYTEAITLCPNVPIYW-TNRALCHLKRNDWTKVEADCRKAIQLDH   79 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~al~l~p   79 (281)
                      ++.++...|+....+..+|..+...+  ++++|+..+.++++.+|.+...+ ..+|.++...+.+++|+..++++++++|
T Consensus        96 ~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p  175 (334)
T d1dcea1          96 LESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF  175 (334)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC
Confidence            45566677888888888888887665  48999999999999999888775 5677888889999999999999999999


Q ss_pred             cchhHHHHHHHHHHHhcChHH
Q 023501           80 DSVKGHYLLGQTLLQRNEYAD  100 (281)
Q Consensus        80 ~~~~a~~~la~~~~~~g~~~~  100 (281)
                      .+..+|+.+|.++..+|++++
T Consensus       176 ~~~~a~~~l~~~~~~~~~~~~  196 (334)
T d1dcea1         176 SNYSSWHYRSCLLPQLHPQPD  196 (334)
T ss_dssp             CCHHHHHHHHHHHHHHSCCCC
T ss_pred             CCHHHHHHHHHHHHHhcCHHH
Confidence            999999999999999887643

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3.5e-11  Score=106.53  Aligned_cols=109  Identities=10%  Similarity=-0.076  Sum_probs=71.4

Q ss_pred             hhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhH
Q 023501            5 AGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKG   84 (281)
Q Consensus         5 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a   84 (281)
                      .+...+++.+..+..+|..+.+.|++.+|+..|.+++..+|  ..++.++|.++...|+|++|+.+|.+|++++|+++.+
T Consensus       111 ~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~  188 (497)
T d1ya0a1         111 TVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQP  188 (497)
T ss_dssp             C-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHH
T ss_pred             HHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHH
Confidence            34445677788889999999999999999999999988776  4678889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           85 HYLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        85 ~~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      |+.+|.++...|++.+|+.+|.+++.+.|..
T Consensus       189 ~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~  219 (497)
T d1ya0a1         189 YNQLAILASSKGDHLTTIFYYCRSIAVKFPF  219 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999997763

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.06  E-value=2.1e-09  Score=88.01  Aligned_cols=109  Identities=12%  Similarity=0.021  Sum_probs=94.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHH-hcCHHHHHHHHHHHHhhcCc--
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV------PIYWTNRALCHLK-RNDWTKVEADCRKAIQLDHD--   80 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~p~--   80 (281)
                      .+..+..+...|..|.+.|++++|+.+|.+++.+.+..      ..++.++|.+|.. +|++++|+..+++|+++.+.  
T Consensus        73 ~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~  152 (290)
T d1qqea_          73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ  152 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            56678899999999999999999999999999986554      6788889988854 79999999999999988543  


Q ss_pred             ----chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCC
Q 023501           81 ----SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPK  118 (281)
Q Consensus        81 ----~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~  118 (281)
                          ...++..+|.++..+|+|++|+..|++++...+.....
T Consensus       153 ~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  194 (290)
T d1qqea_         153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             chhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhh
Confidence                35678999999999999999999999999998765443

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.06  E-value=6.4e-11  Score=71.43  Aligned_cols=48  Identities=17%  Similarity=0.223  Sum_probs=39.2

Q ss_pred             CCcccccCCcccccC---cee-cCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501          205 PDYLCCKITLDIFRD---PVI-TPSGVTYERAVILDHLDKVGKFDPITREPLR  253 (281)
Q Consensus       205 p~~~~c~i~~~~~~~---pv~-~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~  253 (281)
                      .+...|+||.+-+.+   ++. ++|||.|+..||.+|+..+. .||+||.++-
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~-~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS-TCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC-SCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCC-cCCCCCCEeE
Confidence            456679999988875   333 46999999999999998776 5999998763

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.04  E-value=1.2e-10  Score=94.35  Aligned_cols=129  Identities=16%  Similarity=0.108  Sum_probs=97.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHH
Q 023501           21 GNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYAD  100 (281)
Q Consensus        21 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~  100 (281)
                      +..+++.|++++|+..|+++++.+|+++.++.+++.+|...|++++|+..++++++++|++..++..++.++...+..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999988877766


Q ss_pred             HHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501          101 GIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus       101 A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      +...+.+.....+   +     .....       .........+.++..++...+.++.+..+.
T Consensus        83 a~~~~~~~~~~~~---p-----~~~~~-------~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          83 FAQGAATAKVLGE---N-----EELTK-------SLVSFNLSMVSQDYEQVSELALQIEELRQE  131 (264)
T ss_dssp             HTTSCCCEECCCS---C-----HHHHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHhhhhhcccC---c-----hHHHH-------HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            5544332222210   1     11111       112223334456666777777777766544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=5.6e-09  Score=86.11  Aligned_cols=108  Identities=13%  Similarity=-0.000  Sum_probs=95.9

Q ss_pred             hhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcc
Q 023501            7 LAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV-----PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDS   81 (281)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~   81 (281)
                      +..++..++....+|..++..|++++|+.+|+++++..|.+     ..++..+|.+|..+|++++|+..+++++++.+..
T Consensus         5 ~~~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~   84 (366)
T d1hz4a_           5 IREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH   84 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             ccccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence            34556678888899999999999999999999999999986     3588899999999999999999999999987543


Q ss_pred             ------hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           82 ------VKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        82 ------~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                            ..++..++.++...|++..|...+.+++.+.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~  123 (366)
T d1hz4a_          85 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE  123 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence                  567888999999999999999999999988654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=7.2e-10  Score=92.55  Aligned_cols=113  Identities=11%  Similarity=0.070  Sum_probs=96.8

Q ss_pred             hhhhhhchHHHHHHHHHHHHHH----------HhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC--HHHHHHH
Q 023501            3 LEAGLAGVAKQAEQLRLDGNYY----------FSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRND--WTKVEAD   70 (281)
Q Consensus         3 l~~~~~~~~~~a~~~~~~g~~~----------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~   70 (281)
                      .+.++..+|+...+|..++..+          ...|++.+|+.+|++++..+|+++.+|..+|.++..+++  +++|+..
T Consensus        52 ~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~  131 (334)
T d1dcea1          52 TSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELEL  131 (334)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHH
Confidence            4556667788777766555554          445558999999999999999999999999999988875  8999999


Q ss_pred             HHHHHhhcCcchhHH-HHHHHHHHHhcChHHHHHHHHHHHhhccCC
Q 023501           71 CRKAIQLDHDSVKGH-YLLGQTLLQRNEYADGIKELEKALNLGRGA  115 (281)
Q Consensus        71 ~~~al~l~p~~~~a~-~~la~~~~~~g~~~~A~~~~~kal~~~p~~  115 (281)
                      +.++++++|.+..++ +..|.++...|.+++|+..+++++.++|.+
T Consensus       132 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~  177 (334)
T d1dcea1         132 CARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN  177 (334)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC
T ss_pred             HHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCC
Confidence            999999999998886 577899999999999999999999998873

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.87  E-value=1.7e-08  Score=74.67  Aligned_cols=108  Identities=14%  Similarity=0.156  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhcCcc------------hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCCCc
Q 023501           52 TNRALCHLKRNDWTKVEADCRKAIQLDHDS------------VKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKG  119 (281)
Q Consensus        52 ~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------------~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~~~  119 (281)
                      ...|..++..|+|++|+..|++|+.+.|..            ..+|.++|.+|..+|++++|+..+.+++.+.|......
T Consensus        13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~   92 (156)
T d2hr2a1          13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN   92 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccc
Confidence            344778889999999999999999998864            35789999999999999999999999999976533321


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023501          120 YIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAALEEKHV  164 (281)
Q Consensus       120 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (281)
                      .......     .......+......++++++...+.++++..+.
T Consensus        93 ~~~~~~~-----~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          93 QDEGKLW-----ISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             STHHHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccccchh-----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            1111111     112333455566678899999999999987654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=9.3e-09  Score=84.74  Aligned_cols=106  Identities=16%  Similarity=0.073  Sum_probs=93.4

Q ss_pred             chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh------c
Q 023501            9 GVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNV----PIYWTNRALCHLKRNDWTKVEADCRKAIQL------D   78 (281)
Q Consensus         9 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~   78 (281)
                      ..+..+..+...|..+...|++++|+..+.+++...|.+    ...+.++|.++..+|++++|...+++++..      .
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  287 (366)
T d1hz4a_         208 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM  287 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccC
Confidence            345667788889999999999999999999999887764    467788999999999999999999999854      4


Q ss_pred             CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           79 HDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        79 p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      |....++..+|.+|..+|++++|+..+++++.+.+.
T Consensus       288 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         288 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence            677889999999999999999999999999998654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.1e-08  Score=88.31  Aligned_cols=84  Identities=14%  Similarity=0.050  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTL   92 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~   92 (281)
                      ....+..+|..+...|+|++|+.+|.+|+.++|+++..|+++|.++...|++.+|+.+|.+|+.++|.++.|+.+++.++
T Consensus       151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHhc
Q 023501           93 LQRN   96 (281)
Q Consensus        93 ~~~g   96 (281)
                      ....
T Consensus       231 ~~~~  234 (497)
T d1ya0a1         231 SKAL  234 (497)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            7654

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=2.7e-09  Score=74.87  Aligned_cols=51  Identities=12%  Similarity=0.067  Sum_probs=39.8

Q ss_pred             CCcccccCCcccccCc------------------eecCCCcccccchHHhHhccCC----CCCCCCCCCcCCC
Q 023501          205 PDYLCCKITLDIFRDP------------------VITPSGVTYERAVILDHLDKVG----KFDPITREPLRES  255 (281)
Q Consensus       205 p~~~~c~i~~~~~~~p------------------v~~~~g~~~~~~~i~~~~~~~~----~~cP~~~~~~~~~  255 (281)
                      +.+-.|+||.+-|.+|                  ++++|||.|+..||..|+....    .+||+||..+...
T Consensus        23 ~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             cccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence            3455799999887653                  3589999999999999997532    2599999887543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=1.2e-07  Score=78.02  Aligned_cols=144  Identities=10%  Similarity=-0.016  Sum_probs=110.0

Q ss_pred             hhhhhhc-hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCc
Q 023501            3 LEAGLAG-VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPI-YWTNRALCHLKRNDWTKVEADCRKAIQLDHD   80 (281)
Q Consensus         3 l~~~~~~-~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~   80 (281)
                      ++.+++. .|.....+...+......|+++.|...|.+++...|.+.. +|...+......|+++.|...+.++++..|.
T Consensus        87 ~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~  166 (308)
T d2onda1          87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART  166 (308)
T ss_dssp             HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            4455543 5666777888889899999999999999999999987754 7888899999999999999999999999999


Q ss_pred             chhHHHHHHHHHHH-hcChHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023501           81 SVKGHYLLGQTLLQ-RNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSLKEACEAAL  159 (281)
Q Consensus        81 ~~~a~~~la~~~~~-~g~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (281)
                      +...+...|..... .|+.+.|...|++++...|.+.       .++..         ...-....++.+.+...+++++
T Consensus       167 ~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~-------~~w~~---------y~~~~~~~g~~~~aR~~fe~ai  230 (308)
T d2onda1         167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP-------EYVLA---------YIDYLSHLNEDNNTRVLFERVL  230 (308)
T ss_dssp             CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH-------HHHHH---------HHHHHHTTCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhH-------HHHHH---------HHHHHHHcCChHHHHHHHHHHH
Confidence            99999888876544 5889999999999999877632       22211         1122233456666777777777


Q ss_pred             HHh
Q 023501          160 EEK  162 (281)
Q Consensus       160 ~~~  162 (281)
                      ...
T Consensus       231 ~~~  233 (308)
T d2onda1         231 TSG  233 (308)
T ss_dssp             HSS
T ss_pred             HhC
Confidence            653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.74  E-value=5.5e-09  Score=84.36  Aligned_cols=116  Identities=9%  Similarity=-0.030  Sum_probs=101.6

Q ss_pred             hhhhhhhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHH-hhcCc
Q 023501            2 VLEAGLAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAI-QLDHD   80 (281)
Q Consensus         2 ~l~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~l~p~   80 (281)
                      .++++++..|+++..+..+|..+...|++++|+..|+++++++|++...+..++.++...+..+++.....+.. ..+|.
T Consensus        18 ~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~   97 (264)
T d1zbpa1          18 LLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENE   97 (264)
T ss_dssp             HHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCch
Confidence            35678888999999999999999999999999999999999999999999999999888888777766555443 34577


Q ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      ....+...+.++...|++++|...+.++.++.|..+.
T Consensus        98 ~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~  134 (264)
T d1zbpa1          98 ELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  134 (264)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence            7888899999999999999999999999999887544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=1.9e-07  Score=76.73  Aligned_cols=115  Identities=11%  Similarity=-0.086  Sum_probs=99.6

Q ss_pred             hhhhhhchHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHhhcCc
Q 023501            3 LEAGLAGVAKQ-AEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHL-KRNDWTKVEADCRKAIQLDHD   80 (281)
Q Consensus         3 l~~~~~~~~~~-a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~l~p~   80 (281)
                      ++.++...+.. ...+...+....+.|+++.|...|.+++...|.+...|...|.... ..|+.+.|...++++++..|.
T Consensus       122 ~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~  201 (308)
T d2onda1         122 YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD  201 (308)
T ss_dssp             HHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh
Confidence            34455544443 4567888999999999999999999999999999999999887654 468999999999999999999


Q ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCCC
Q 023501           81 SVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKP  117 (281)
Q Consensus        81 ~~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~~~~  117 (281)
                      ++..+..++..+...|+++.|...|++++...|.++.
T Consensus       202 ~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~  238 (308)
T d2onda1         202 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE  238 (308)
T ss_dssp             CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence            9999999999999999999999999999998775433

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=3.6e-09  Score=70.39  Aligned_cols=33  Identities=9%  Similarity=0.020  Sum_probs=29.0

Q ss_pred             eecCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501          221 VITPSGVTYERAVILDHLDKVGKFDPITREPLRE  254 (281)
Q Consensus       221 v~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~  254 (281)
                      ++++|||.|+..||.+|++.+. +||+||.++..
T Consensus        53 ~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~~~~   85 (88)
T d3dplr1          53 AWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWEF   85 (88)
T ss_dssp             EEETTSCEEEHHHHHHHHTTCS-BCSSSCSBCCE
T ss_pred             EEccccCcccHHHHHHHHHHCC-cCCCCCCcccc
Confidence            4578999999999999999877 59999998763

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.58  E-value=2.1e-08  Score=61.41  Aligned_cols=49  Identities=14%  Similarity=0.108  Sum_probs=40.5

Q ss_pred             CcccccCCcccccCceecCCC-----cccccchHHhHhcc-CCCCCCCCCCCcCC
Q 023501          206 DYLCCKITLDIFRDPVITPSG-----VTYERAVILDHLDK-VGKFDPITREPLRE  254 (281)
Q Consensus       206 ~~~~c~i~~~~~~~pv~~~~g-----~~~~~~~i~~~~~~-~~~~cP~~~~~~~~  254 (281)
                      +...|+||.+-+.++.++||+     |.|++.||.+|+.. +..+||+||.++..
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeec
Confidence            456799999999998887764     99999999999964 33469999998864

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=4.6e-07  Score=63.19  Aligned_cols=66  Identities=15%  Similarity=0.026  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHh---cCHHHHHHHHHHHHhhcCcc-hhHHHHHHHHHHHhcChHHHHHHHHHHHhhccC
Q 023501           49 IYWTNRALCHLKR---NDWTKVEADCRKAIQLDHDS-VKGHYLLGQTLLQRNEYADGIKELEKALNLGRG  114 (281)
Q Consensus        49 ~~~~~~a~~~~~~---~~~~~A~~~~~~al~l~p~~-~~a~~~la~~~~~~g~~~~A~~~~~kal~~~p~  114 (281)
                      ...++.|.|+.+-   ++.++++..++.+++.+|.+ ..++|.+|.+|+.+|+|++|..+++++|+++|+
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~  105 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  105 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            3444444444422   23445555555555555443 245555555555555555555555555555444

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=4.7e-07  Score=63.16  Aligned_cols=79  Identities=4%  Similarity=-0.102  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHH
Q 023501           14 AEQLRLDGNYYFSKD---RYGAAIDAYTEAITLCPNVP-IYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLG   89 (281)
Q Consensus        14 a~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la   89 (281)
                      ++.-++.|..+.+..   +.++||..++.++..+|.+. .+++++|.+|+++|+|++|...++++++++|+|..+....-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            567788888888665   44689999999999999765 79999999999999999999999999999999998876655


Q ss_pred             HHH
Q 023501           90 QTL   92 (281)
Q Consensus        90 ~~~   92 (281)
                      .+-
T Consensus       115 ~Ie  117 (124)
T d2pqrb1         115 MVE  117 (124)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.38  E-value=1.2e-06  Score=66.02  Aligned_cols=70  Identities=13%  Similarity=0.036  Sum_probs=64.2

Q ss_pred             hhchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 023501            7 LAGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQ   76 (281)
Q Consensus         7 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   76 (281)
                      ....+.....+..+|..+...|+|++|+..+++++..+|.+..+|.+++.++..+|++.+|+..|+++.+
T Consensus        60 ~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          60 TALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3345667788999999999999999999999999999999999999999999999999999999999843

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.31  E-value=6.4e-06  Score=65.42  Aligned_cols=96  Identities=18%  Similarity=0.178  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCcchhHHHHH
Q 023501           13 QAEQLRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLK----RNDWTKVEADCRKAIQLDHDSVKGHYLL   88 (281)
Q Consensus        13 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~l   88 (281)
                      +|+++..+|..++..+||++|+.+|++|.+.  +++.+++++|.+|..    ..++..|..++..+...+  ++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcc
Confidence            3678999999999999999999999999775  588999999999987    568999999999988765  67888899


Q ss_pred             HHHHHH----hcChHHHHHHHHHHHhhc
Q 023501           89 GQTLLQ----RNEYADGIKELEKALNLG  112 (281)
Q Consensus        89 a~~~~~----~g~~~~A~~~~~kal~~~  112 (281)
                      |.++..    .++.+.|...+..+....
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g  104 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLK  104 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhh
Confidence            988875    357899999999988763

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.4e-06  Score=58.33  Aligned_cols=44  Identities=11%  Similarity=0.073  Sum_probs=33.2

Q ss_pred             cccccCCcccccC---ceecCCCcccccchHHhHhccC----C---CCCCCCCC
Q 023501          207 YLCCKITLDIFRD---PVITPSGVTYERAVILDHLDKV----G---KFDPITRE  250 (281)
Q Consensus       207 ~~~c~i~~~~~~~---pv~~~~g~~~~~~~i~~~~~~~----~---~~cP~~~~  250 (281)
                      ...||||.+.+..   |++++|||.||+.||..|+...    .   ..||.|+-
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            3469999987753   5567899999999999998631    1   14998754

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.92  E-value=9.4e-05  Score=52.23  Aligned_cols=82  Identities=21%  Similarity=0.133  Sum_probs=69.6

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH----hcC
Q 023501           26 SKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLK----RNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ----RNE   97 (281)
Q Consensus        26 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~----~g~   97 (281)
                      ...++++|+.+|.++.+.  +++.+.+++|.+|..    ..++++|+.+++++.+.  .++.+.+.+|.+|..    ..+
T Consensus        35 ~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred             cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCC
Confidence            456889999999998775  678889999999875    45799999999999886  468899999999887    458


Q ss_pred             hHHHHHHHHHHHhh
Q 023501           98 YADGIKELEKALNL  111 (281)
Q Consensus        98 ~~~A~~~~~kal~~  111 (281)
                      +.+|+.+|.++.++
T Consensus       111 ~~~A~~~~~~Aa~~  124 (133)
T d1klxa_         111 EKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHC
Confidence            99999999999887

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.79  E-value=0.00013  Score=57.41  Aligned_cols=97  Identities=18%  Similarity=0.222  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCcchh
Q 023501           12 KQAEQLRLDGNYYFS----KDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLK----RNDWTKVEADCRKAIQLDHDSVK   83 (281)
Q Consensus        12 ~~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~   83 (281)
                      .....+..+|..+..    ..+...+..++..+.+  +.++.+.+++|.+|..    .+++++|+.+++++.+.+  ++.
T Consensus       140 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~  215 (265)
T d1ouva_         140 NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGG  215 (265)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred             cccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHH
Confidence            345567788888876    5577788888888775  5688999999999887    568999999999998884  689


Q ss_pred             HHHHHHHHHHH----hcChHHHHHHHHHHHhhc
Q 023501           84 GHYLLGQTLLQ----RNEYADGIKELEKALNLG  112 (281)
Q Consensus        84 a~~~la~~~~~----~g~~~~A~~~~~kal~~~  112 (281)
                      +.+.+|.+|..    ..++++|+.+|+++....
T Consensus       216 a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         216 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence            99999999986    347999999999999884

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.39  E-value=0.00034  Score=49.19  Aligned_cols=78  Identities=21%  Similarity=0.140  Sum_probs=65.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH----hcChHHHHH
Q 023501           28 DRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQ----RNEYADGIK  103 (281)
Q Consensus        28 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~----~g~~~~A~~  103 (281)
                      +|+++|+.+|.++.+..  ++....+++.  ....++++|+..++++.+.  .++.+.+.+|.+|..    ..++++|+.
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            58999999999999875  5556666664  3457899999999999876  578999999999986    457899999


Q ss_pred             HHHHHHhh
Q 023501          104 ELEKALNL  111 (281)
Q Consensus       104 ~~~kal~~  111 (281)
                      +|+++.+.
T Consensus        81 ~~~~aa~~   88 (133)
T d1klxa_          81 YYSKACGL   88 (133)
T ss_dssp             HHHHHHHT
T ss_pred             HHhhhhcc
Confidence            99999887

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.75  E-value=0.073  Score=32.81  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=28.3

Q ss_pred             hchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023501            8 AGVAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAIT   42 (281)
Q Consensus         8 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~   42 (281)
                      +.+.+.|..+-..+..+.+.|+|++||+++.+|..
T Consensus         2 ~sPLN~AH~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           2 EGPLNLAHQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34567788888899999999999999998776654

>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=90.67  E-value=0.028  Score=26.87  Aligned_cols=28  Identities=11%  Similarity=0.198  Sum_probs=21.4

Q ss_pred             ccccCCcccccCc-eecCCCcccccchHH
Q 023501          208 LCCKITLDIFRDP-VITPSGVTYERAVIL  235 (281)
Q Consensus       208 ~~c~i~~~~~~~p-v~~~~g~~~~~~~i~  235 (281)
                      |.|..|+.-+..- |.-.+|..||+.|.-
T Consensus         1 frca~cgk~lestt~adkdgeiyck~cya   29 (31)
T d1ibia2           1 FRCAKCGKSLESTTLTEKEGEIYCKGCYA   29 (31)
T ss_dssp             EECSSSCCEECSSCSEEETTEEECHHHHH
T ss_pred             CccccccCccccceeeccCCcEEEeeeee
Confidence            5788898766654 445699999999964

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.33  E-value=0.28  Score=28.99  Aligned_cols=39  Identities=15%  Similarity=0.270  Sum_probs=29.4

Q ss_pred             CCCCCcccccCCcccccCc--ee--cCCCcccccchHHhHhcc
Q 023501          202 AEVPDYLCCKITLDIFRDP--VI--TPSGVTYERAVILDHLDK  240 (281)
Q Consensus       202 ~~~p~~~~c~i~~~~~~~p--v~--~~~g~~~~~~~i~~~~~~  240 (281)
                      ...+..+.|.+|.+-+.|-  |.  +--+|.||=-|-...++.
T Consensus         3 ~~~~~~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik~   45 (80)
T d2cs3a1           3 MANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA   45 (80)
T ss_dssp             SCSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred             CCCCCceeeeeehhhhcCCceEeCCCCcCCceeccccHHHHHh
Confidence            3445668999999999983  22  226799999999888865

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=88.02  E-value=1.4  Score=36.45  Aligned_cols=91  Identities=13%  Similarity=0.075  Sum_probs=62.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcCh
Q 023501           19 LDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEY   98 (281)
Q Consensus        19 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~   98 (281)
                      ..+..++..+....|............+ ......++...+..+++..+...+...-.-........|.+|.++..+|+.
T Consensus       257 ~~a~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~  335 (450)
T d1qsaa1         257 IVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGRE  335 (450)
T ss_dssp             HHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCchHHHHHHHHhhcccccc-hHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCCh
Confidence            3344445566677777777766554444 333334444456678999888887654333334578889999999999999


Q ss_pred             HHHHHHHHHHHh
Q 023501           99 ADGIKELEKALN  110 (281)
Q Consensus        99 ~~A~~~~~kal~  110 (281)
                      ++|...|..+-.
T Consensus       336 ~~A~~~~~~~a~  347 (450)
T d1qsaa1         336 AEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             hhHHHHHHHHhc
Confidence            999999988654

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.32  E-value=1.1  Score=27.54  Aligned_cols=55  Identities=16%  Similarity=0.135  Sum_probs=38.0

Q ss_pred             CCCCCCCcccccCCccccc-----Ccee--cCCCcccccchHHhHhccCCCCCCCCCCCcCC
Q 023501          200 TPAEVPDYLCCKITLDIFR-----DPVI--TPSGVTYERAVILDHLDKVGKFDPITREPLRE  254 (281)
Q Consensus       200 ~~~~~p~~~~c~i~~~~~~-----~pv~--~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~~  254 (281)
                      +|...-+.-.|.||++-.-     +|-+  ..|+...||.|.+=-.......||.|+.++..
T Consensus         9 kp~~~~~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr   70 (93)
T d1weoa_           9 KPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR   70 (93)
T ss_dssp             SCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred             CChhhcccchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhhh
Confidence            3444455677999874322     3443  34888999999987666655569999988764

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.28  E-value=0.72  Score=29.28  Aligned_cols=34  Identities=21%  Similarity=0.220  Sum_probs=28.0

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 023501           10 VAKQAEQLRLDGNYYFSKDRYGAAIDAYTEAITL   43 (281)
Q Consensus        10 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   43 (281)
                      ....|..+...|..+-..|+|++|+.+|..|++.
T Consensus        11 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4456777888899999999999999998888763

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.36  E-value=1.2  Score=37.79  Aligned_cols=52  Identities=15%  Similarity=0.079  Sum_probs=37.9

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChH
Q 023501           48 PIYWTNRALCHLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYA   99 (281)
Q Consensus        48 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~   99 (281)
                      ......+|...+..|+|.-|.+.++.++..+|++.++...++.+|.++|.-.
T Consensus       430 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~  481 (505)
T d2cfua2         430 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA  481 (505)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhC
Confidence            4445556666667778888888888888888888888888888888777543

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=83.47  E-value=0.098  Score=31.15  Aligned_cols=41  Identities=20%  Similarity=0.134  Sum_probs=29.0

Q ss_pred             cccccCCcccccCceecCCCcccccchHHhHhccCCCCCCCCCCCcC
Q 023501          207 YLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLR  253 (281)
Q Consensus       207 ~~~c~i~~~~~~~pv~~~~g~~~~~~~i~~~~~~~~~~cP~~~~~~~  253 (281)
                      ++.||.|...    +....|+.+|..|=..+-.. . .||-|+++|.
T Consensus         2 ~~~CP~C~~e----L~~~~~~~~C~~C~~~~~~~-a-~CPdC~~~Le   42 (71)
T d2jnea1           2 ELHCPQCQHV----LDQDNGHARCRSCGEFIEMK-A-LCPDCHQPLQ   42 (71)
T ss_dssp             CCBCSSSCSB----EEEETTEEEETTTCCEEEEE-E-ECTTTCSBCE
T ss_pred             CCcCCCccCc----ccccCCCEehhhhhhhheeE-E-eCCccccHHH
Confidence            4579999844    33457899999996655432 2 4999998874

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=81.04  E-value=4.9  Score=26.99  Aligned_cols=81  Identities=14%  Similarity=0.051  Sum_probs=48.0

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCchHHHHHHHHH-HHHhcCHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhcChHHHHHH
Q 023501           26 SKDRYGAAIDAYTEAITLCPNVPIYWTNRALC-HLKRNDWTKVEADCRKAIQLDHDSVKGHYLLGQTLLQRNEYADGIKE  104 (281)
Q Consensus        26 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~-~~~~~~~~~A~~~~~~al~l~p~~~~a~~~la~~~~~~g~~~~A~~~  104 (281)
                      ..++...-+.+|-.   .+ .++. |..+|.- +.+.|.-++--+.++..++.+.-++..+..+|.+|...|...+|-+.
T Consensus        68 ~C~Nlk~vv~C~~~---~n-~~se-~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nel  142 (161)
T d1wy6a1          68 KCQNLKSVVECGVI---NN-TLNE-HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTL  142 (161)
T ss_dssp             GCSCTHHHHHHHHH---TT-CCCH-HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhhcHHHHHHHHHH---hc-chHH-HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHH
Confidence            34555555655533   12 1222 3344443 34555555444455666776666778888888888888888888888


Q ss_pred             HHHHHhh
Q 023501          105 LEKALNL  111 (281)
Q Consensus       105 ~~kal~~  111 (281)
                      +.+|-+-
T Consensus       143 l~~ACe~  149 (161)
T d1wy6a1         143 LIEACKK  149 (161)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            8877655

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.04  E-value=1.4  Score=26.93  Aligned_cols=30  Identities=20%  Similarity=0.224  Sum_probs=21.7

Q ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           82 VKGHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        82 ~~a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                      +..+-+.|+.+...|+|++|+++.+++...
T Consensus         8 AH~~~RrAer~l~~~rydeAIech~kA~~y   37 (83)
T d2crba1           8 AHQQSRRADRLLAAGKYEEAISCHRKATTY   37 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345567778888888888888877776654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.54  E-value=1.8  Score=34.43  Aligned_cols=87  Identities=20%  Similarity=0.182  Sum_probs=43.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-------------c-----
Q 023501           17 LRLDGNYYFSKDRYGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWTKVEADCRKAIQL-------------D-----   78 (281)
Q Consensus        17 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-------------~-----   78 (281)
                      ....|..+++.|.|+.|..+|+..=.        |.....++..+++++.|.+.+.++-..             .     
T Consensus        17 ~~~i~~~c~~~~lye~A~~lY~~~~d--------~~rl~~~~v~l~~~~~avd~~~k~~~~~~~k~~~~~l~~~~e~~la   88 (336)
T d1b89a_          17 IQQVGDRCYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLA   88 (336)
T ss_dssp             ------------CTTTHHHHHHHTTC--------HHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCCC--------HHHHHHHHHhhccHHHHHHHHHHcCCHHHHHHHHHHHHhCcHHHHH
Confidence            34568888888888888888874211        344556677777777777766654110             0     


Q ss_pred             -------CcchhHHHHHHHHHHHhcChHHHHHHHHHHHhh
Q 023501           79 -------HDSVKGHYLLGQTLLQRNEYADGIKELEKALNL  111 (281)
Q Consensus        79 -------p~~~~a~~~la~~~~~~g~~~~A~~~~~kal~~  111 (281)
                             -.++.-.......|...|.+++.+..++.++..
T Consensus        89 ~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~  128 (336)
T d1b89a_          89 QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL  128 (336)
T ss_dssp             HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC
Confidence                   012222233445555666667777777766554