Citrus Sinensis ID: 023512

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
Protein Sequence
MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATEILLDQIMRQQAQ
Secondary Structure (PSIPRED)
cccccccEEEEEccccEEEEEEEHHHHHHHHHHccccccccccccccccccEEEcccccHHHHHHHHHHccccEEEEEEccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccEEEEcccccEEEEcccccHHHHHHHHHHccccEEEEEEccEEEEEEEHHHHHHHHHHccccccccccccccccccEEEcccccHHHHHHHHHHccccEEEEEcccccEEEEEEHHHHHHHHHHcHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHccccEEEEEcccccEEEEEcHHHHHHHHHHcccccccccHHHHccccccEEccccHHHHHHHHHHHccccccEEEccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHcccccccEEEccccHHHHHHHHHHHccccEEEEEEcccEEEEEccHHHHHHHHHccccccccEEEEEccccccccccccHHHHHHHHHHccccccccEEcccccEEEEEEHHHHHHHHHccHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MAARRVDALLLTDSNALLCGILTDKDIATRVIARELnleetpvskvmtrnptfvlsDTLAVEALQKMVQGkfrhlpvvengevIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEkhwgtsisgpnTFIETLRERmfrpslstiipekskvvtisptDTVLMATKKMLELRLSSAvvtvenkprgiltsKDILMRVISqnlpadstlvekvmtpnpecatidtpivDALHimhdgkflhlpvvdrdgdvvDVVDVIHITHAAVATEILLDQIMRQQAQ
Flexible Loop (DISEMBL)
MAARRVDALLLTDSNALLCGILTDKDIATRVIARelnleetpvskvmtrnpTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEgvekhwgtsisgpnTFIETLRERMFRPslstiipekskvvtisptDTVLMATKKMLELRLssavvtvenkprgiltskdiLMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATEILLDQIMRQQAQ
Low Complexity Region (SEG)
MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERaaekgkaiaaavegvekHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPvvdrdgdvvdvvdvIHITHAAVATEILLDQIMRQQAQ
Disordered region (IsUnstruct)
*****VDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATEILLDQI******
Disordered Region (DISOPRED)
***RRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEK******AVEGVEKH****************************PEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATEI***********
Disordered Region (DISEMBL)
MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATEILLDQIMRQQAQ
Disordered Region (DISPRO)
****RVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATEILLDQIMR****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATEILLDQIMRQQAQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	281	2.2.26 [Sep-21-2011]
P0DH79	548	CBS domain-containing pro	yes	no	0.953	0.489	0.813	1e-125
Q0WLC7	548	CBS domain-containing pro	yes	no	0.953	0.489	0.813	1e-125
Q9FMV3	543	CBS domain-containing pro	no	no	0.893	0.462	0.800	1e-116
Q9LF97	556	CBS domain-containing pro	no	no	0.950	0.480	0.700	1e-109
Q9SJQ5	536	CBS domain-containing pro	no	no	0.935	0.490	0.708	1e-106
O13965	730	Meiotically up-regulated	yes	no	0.939	0.361	0.294	1e-31
P32987	164	Uncharacterized 17.7 kDa	N/A	no	0.370	0.634	0.370	3e-08
P50100	196	Uncharacterized protein M	no	no	0.419	0.602	0.295	2e-07
Q58069	194	Uncharacterized protein M	yes	no	0.327	0.474	0.343	7e-06
Q9LEV3	206	CBS domain-containing pro	no	no	0.373	0.509	0.288	0.0001

>sp|P0DH79|Y5064_ARATH CBS domain-containing protein CBSCBSPB5 OS=Arabidopsis thaliana GN=CBSCBSPB5 PE=2 SV=1

 Score =  449 bits (1155), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/268 (81%), Positives = 246/268 (91%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTD+DIAT+VIA++LNLEETPVSKVMT+NP FVLSDT+A
Sbjct: 87  MAARRVDALLLTDSNALLCGILTDRDIATKVIAKQLNLEETPVSKVMTKNPVFVLSDTIA 146

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER+ EKGKAIAAAVEGVEK+
Sbjct: 147 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERSVEKGKAIAAAVEGVEKN 206

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTSI+GPNTF+ETLRER+F+PSLSTIIPE +KV+ +   +TVL  T KM+E + S+A+V
Sbjct: 207 WGTSIAGPNTFMETLRERIFKPSLSTIIPENTKVLKVGLDETVLGVTMKMVEYQSSAAMV 266

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            VENK  GILTSKDILMRVISQNLP ++T VEKVMTPNPE AT+D  IV+ALHIMH+GKF
Sbjct: 267 MVENKLVGILTSKDILMRVISQNLPQETTTVEKVMTPNPESATVDMAIVEALHIMHNGKF 326

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVAT 268
           LHLPV+D+DGDVV V+DVIHITHAAV T
Sbjct: 327 LHLPVLDKDGDVVAVIDVIHITHAAVTT 354

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WLC7|Y5053_ARATH CBS domain-containing protein CBSCBSPB4 OS=Arabidopsis thaliana GN=CBSCBSPB4 PE=2 SV=2

 Score =  449 bits (1155), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/268 (81%), Positives = 246/268 (91%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTD+DIAT+VIA++LNLEETPVSKVMT+NP FVLSDT+A
Sbjct: 87  MAARRVDALLLTDSNALLCGILTDRDIATKVIAKQLNLEETPVSKVMTKNPVFVLSDTIA 146

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER+ EKGKAIAAAVEGVEK+
Sbjct: 147 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERSVEKGKAIAAAVEGVEKN 206

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTSI+GPNTF+ETLRER+F+PSLSTIIPE +KV+ +   +TVL  T KM+E + S+A+V
Sbjct: 207 WGTSIAGPNTFMETLRERIFKPSLSTIIPENTKVLKVGLDETVLGVTMKMVEYQSSAAMV 266

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            VENK  GILTSKDILMRVISQNLP ++T VEKVMTPNPE AT+D  IV+ALHIMH+GKF
Sbjct: 267 MVENKLVGILTSKDILMRVISQNLPQETTTVEKVMTPNPESATVDMAIVEALHIMHNGKF 326

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVAT 268
           LHLPV+D+DGDVV V+DVIHITHAAV T
Sbjct: 327 LHLPVLDKDGDVVAVIDVIHITHAAVTT 354

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMV3|Y5349_ARATH CBS domain-containing protein CBSCBSPB1 OS=Arabidopsis thaliana GN=CBSCBSPB1 PE=1 SV=1

 Score =  418 bits (1075), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/251 (80%), Positives = 226/251 (90%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MA+RRVDALLLTDSN +LCGILTDKDIATRVI++ELN+EETPVSKVMT+NP FVLS+TLA
Sbjct: 79  MASRRVDALLLTDSNEMLCGILTDKDIATRVISQELNVEETPVSKVMTKNPMFVLSETLA 138

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK 
Sbjct: 139 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKS 198

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGT+ S PNTFIETLR+RMFRPSLSTIIP+ +KV+ +SPTDTVL   KKM+E + S AVV
Sbjct: 199 WGTNTSVPNTFIETLRDRMFRPSLSTIIPDDTKVLKVSPTDTVLTVAKKMVEFQSSCAVV 258

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            +E+K RGI TSKDILMRV+++NLP   TLVE VMT NPE   +DTPIV+ALHIMH+GKF
Sbjct: 259 IIEDKLRGIFTSKDILMRVVAENLPPSETLVETVMTQNPESTIVDTPIVEALHIMHEGKF 318

Query: 241 LHLPVVDRDGD 251
           LHLPV D++GD
Sbjct: 319 LHLPVTDKEGD 329

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF97|Y3295_ARATH CBS domain-containing protein CBSCBSPB3 OS=Arabidopsis thaliana GN=CBSCBSPB3 PE=1 SV=1

 Score =  394 bits (1012), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/267 (70%), Positives = 226/267 (84%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDA LLTDS+ALL GI+TDKD+ATRVIA  L  ++T VSKVMTRNP FV SD+LA
Sbjct: 88  MAARRVDACLLTDSSALLSGIVTDKDVATRVIAEGLRPDQTLVSKVMTRNPIFVTSDSLA 147

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           +EALQKMVQGKFRHLPVVENGEVIALLDI KCLYDAI+RME+AAE+G A+AAAVEGVEK 
Sbjct: 148 LEALQKMVQGKFRHLPVVENGEVIALLDITKCLYDAISRMEKAAEQGSALAAAVEGVEKQ 207

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WG+  S P  FIETLRERMF+P+LSTII + SKV  ++P+D V +A K+M +LR++S ++
Sbjct: 208 WGSGYSAPYAFIETLRERMFKPALSTIITDNSKVALVAPSDPVSVAAKRMRDLRVNSVII 267

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
           +  NK  GILTSKDILMRV++QNL  + TLVEKVMTPNPECA+++T I+DALH MHDGKF
Sbjct: 268 STGNKISGILTSKDILMRVVAQNLSPELTLVEKVMTPNPECASLETTILDALHTMHDGKF 327

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVA 267
           LHLP++D+DG     VDV+ ITHAA++
Sbjct: 328 LHLPIIDKDGSAAACVDVLQITHAAIS 354

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJQ5|Y2650_ARATH CBS domain-containing protein CBSCBSPB2 OS=Arabidopsis thaliana GN=CBSCBSPB2 PE=2 SV=1

 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/268 (70%), Positives = 225/268 (83%), Gaps = 5/268 (1%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDA+LLTDS+ALL GI+TDKDIATRVIA  L  E T VSKVMTRNP FV SD+LA
Sbjct: 86  MAARRVDAVLLTDSSALLSGIVTDKDIATRVIAEGLRPEHTLVSKVMTRNPIFVTSDSLA 145

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           +EALQKMVQGKFRHLPVVENGEVIALLDI KCLYDAI+RME+AAE+G A+A AVE  E+H
Sbjct: 146 IEALQKMVQGKFRHLPVVENGEVIALLDITKCLYDAISRMEKAAEQGSALATAVE--ERH 203

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WG   SG   FI+TLRERMF+P+LSTI+ E +KV  +S +D V +A+KKM +LR++S ++
Sbjct: 204 WG---SGNFAFIDTLRERMFKPALSTIVTENTKVALVSASDPVFVASKKMRDLRVNSVII 260

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            V NK  GILTSKDILMRV++QNL  + TLVEKVMTPNPECA+I+T I+DALHIMHDGKF
Sbjct: 261 AVGNKIHGILTSKDILMRVVAQNLSPELTLVEKVMTPNPECASIETTILDALHIMHDGKF 320

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVAT 268
           LHLPV D+DG  V  +DV+ ITHAA++T
Sbjct: 321 LHLPVFDKDGFAVACLDVLQITHAAIST 348

Arabidopsis thaliana (taxid: 3702)

>sp|O13965|MUG70_SCHPO Meiotically up-regulated gene 70 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug70 PE=1 SV=1

 Score =  136 bits (343), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 154/289 (53%), Gaps = 25/289 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAA+R + +L+ D +  L GI+T  DIATR +   LN  +T ++ +M+ +P  + SDT  
Sbjct: 89  MAAKRQNCVLVVDDDEQLAGIVTATDIATRCVGAGLNARQTLIADIMSTSPLCITSDTRF 148

Query: 61  VEALQKMVQGKFRHLPVVENG----------EVIALLDIAKCLYDAIARMERAAEKGKAI 110
            +AL  M++ KFRHLPVV +G          +VI ++++  CL + + R+ R  E  + +
Sbjct: 149 DDALLLMIEHKFRHLPVVSDGGPDGSAGDEGDVIGIINMRACLREPLNRIARQQEAAQKL 208

Query: 111 AAAVEGVEKHW----------GTSISGPNT-----FIETLRERMFRPSLSTIIPEKSKVV 155
             A+EG ++             +S+SG +      ++E+L+++     + ++I    +  
Sbjct: 209 VEALEGAQEEIENKSVSGNTNSSSVSGNHAAEFLEYVESLKKKASGLEIMSLIDSSEEPF 268

Query: 156 TISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVM 215
            +    TV  AT+ M    +S+ +V       G+ T+ D+++RV++  L    + V +VM
Sbjct: 269 LVGTRTTVAEATESMARSGVSAVLVMDNGAVSGVFTAHDVVLRVLAAGLDPYRSSVIRVM 328

Query: 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
           TP+P+CA     +  AL  M +GKF +LPVVD    ++ ++ + H+  A
Sbjct: 329 TPHPDCALASLRVSTALERMIEGKFSNLPVVDESDAIIGMLSLFHLATA 377

Has a role in meiosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P32987|YBP3_ACIAM Uncharacterized 17.7 kDa protein in bps2 3'region OS=Acidianus ambivalens PE=4 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 4/108 (3%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVT-VENKPRGILTSKDILMRVISQNLPADSTL 210
           +KV  + P  T+  A K+M E  L S VV   +N+  GI+T +DI+    + N   DS  
Sbjct: 11  TKVYVVKPNVTIAEAAKEMKEHNLGSLVVIDSQNRVVGIITERDIVKA--ASNRDIDSP- 67

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDV 258
           VEK MT + +  T DT + DAL IM +  F HLP++  +G +  +V +
Sbjct: 68  VEKYMTKDVKGVTEDTEVTDALDIMLNNGFRHLPIIKSNGKLYGIVSI 115

Acidianus ambivalens (taxid: 2283)

>sp|P50100|Y525_METKA Uncharacterized protein MK0525 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=MK0525 PE=4 SV=2

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 4/122 (3%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVE-NKPRGILTSKDILMRVISQNLPADST 209
           +  V+T SPT+T +    KM E  + S V+  E ++P GI+T +D++++V+SQ    D  
Sbjct: 11  RRDVITGSPTETAVEIAYKMREHGIGSVVIVNEKDEPIGIITERDLVIKVVSQGKNPDEV 70

Query: 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHITHAAV 266
           +   +M+        D  + +A+ +M D     LP+VD +G ++ +V   D++ +    V
Sbjct: 71  IARDIMSQPVITVEEDMEVNEAVKLMVDKGIRRLPIVDDNGKLIGIVTMQDILQVEPYLV 130

Query: 267 AT 268
           AT
Sbjct: 131 AT 132

Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) (taxid: 190192)

>sp|Q58069|Y653_METJA Uncharacterized protein MJ0653 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0653 PE=4 SV=1

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 4/96 (4%)

Query: 170 MLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIV 229
           M E  + + V+   NKP GI+T +DI+ RV+S+NL     L E+VM+        +  I 
Sbjct: 33  MTENNIGAVVIVENNKPIGIVTERDIVKRVVSKNLKPKDVLAEEVMSKKIITIPQNASIT 92

Query: 230 DALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHIT 262
           +A  IM       LPVV +DG++V +V   D++ ++
Sbjct: 93  EAAKIMATHGIKRLPVV-KDGELVGIVTQSDIVRVS 127

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q9LEV3|CBSX3_ARATH CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis thaliana GN=CBSX3 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 6/111 (5%)

Query: 161 DTVLMATKKMLELRLSSAVVTVENKPR---GILTSKDILMRVISQNLPADSTLVEKVMTP 217
           DTV  A K M +  + + VV    + +   GI+T +D L ++I Q   + ST V  +MT 
Sbjct: 79  DTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 138

Query: 218 NPECATI--DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266
             +  T+  +T ++ A+ +M D +  H+PV+ +D  ++ +V +  +  A V
Sbjct: 139 ENKLITVTPETKVLRAMQLMTDNRIRHIPVI-KDKGMIGMVSIGDVVRAVV 188

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
255540203	545	conserved hypothetical protein [Ricinus	0.953	0.491	0.914	1e-139
225456355	546	PREDICTED: CBS domain-containing protein	0.953	0.490	0.910	1e-138
359491097	541	PREDICTED: CBS domain-containing protein	0.953	0.495	0.910	1e-138
449440540	540	PREDICTED: CBS domain-containing protein	0.939	0.488	0.910	1e-137
118484915	541	unknown [Populus trichocarpa]	0.953	0.495	0.895	1e-136
224122050	535	predicted protein [Populus trichocarpa]	0.953	0.500	0.895	1e-136
147863576	569	hypothetical protein VITISV_019408 [Viti	0.992	0.490	0.868	1e-136
125528914	497	hypothetical protein OsI_04983 [Oryza sa	0.953	0.539	0.873	1e-134
357126564	550	PREDICTED: CBS domain-containing protein	0.953	0.487	0.861	1e-133
326509897	550	predicted protein [Hordeum vulgare subsp	0.953	0.487	0.858	1e-132

>gi|255540203|ref|XP_002511166.1| conserved hypothetical protein [Ricinus communis] gi|223550281|gb|EEF51768.1| conserved hypothetical protein [Ricinus communis]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/268 (91%), Positives = 255/268 (95%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNP FVLSDTLA
Sbjct: 79  MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPVFVLSDTLA 138

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+
Sbjct: 139 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKN 198

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGT+ SGPNTFIETLRERMFRPSLSTI+PE SKVVT+ PT+TVL  TKKMLE R SSAVV
Sbjct: 199 WGTTFSGPNTFIETLRERMFRPSLSTILPENSKVVTVLPTETVLAVTKKMLESRSSSAVV 258

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            V+ KPRGILTSKDILMRVI+QNLP+DSTL EKVMTPNPECATIDTPIVDALH MHDGKF
Sbjct: 259 IVDQKPRGILTSKDILMRVIAQNLPSDSTLAEKVMTPNPECATIDTPIVDALHTMHDGKF 318

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVAT 268
           LHLPV+DRDG+VV VVDVIHITHAAVAT
Sbjct: 319 LHLPVLDRDGNVVAVVDVIHITHAAVAT 346

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456355|ref|XP_002283958.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like isoform 1 [Vitis vinifera]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 244/268 (91%), Positives = 255/268 (95%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNP FVLSDTLA
Sbjct: 81  MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPIFVLSDTLA 140

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+
Sbjct: 141 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKN 200

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTS+SGP+TFIETLRERMFRP+LSTIIPE SKVVT+SPTDTVL A KKMLEL+LS AVV
Sbjct: 201 WGTSLSGPSTFIETLRERMFRPALSTIIPENSKVVTVSPTDTVLTAAKKMLELKLSCAVV 260

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            VEN+P+GILTSKDILMRVI+QNL  +ST VEKVMTPNPECATIDTPIVDALH MHDGKF
Sbjct: 261 AVENRPKGILTSKDILMRVIAQNLHPESTPVEKVMTPNPECATIDTPIVDALHTMHDGKF 320

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVAT 268
           LHLPV+DRDG VV V DVIHITHAAVAT
Sbjct: 321 LHLPVIDRDGGVVAVADVIHITHAAVAT 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491097|ref|XP_003634219.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like isoform 2 [Vitis vinifera] gi|297734436|emb|CBI15683.3| unnamed protein product [Vitis vinifera]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 244/268 (91%), Positives = 255/268 (95%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNP FVLSDTLA
Sbjct: 76  MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPIFVLSDTLA 135

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+
Sbjct: 136 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKN 195

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTS+SGP+TFIETLRERMFRP+LSTIIPE SKVVT+SPTDTVL A KKMLEL+LS AVV
Sbjct: 196 WGTSLSGPSTFIETLRERMFRPALSTIIPENSKVVTVSPTDTVLTAAKKMLELKLSCAVV 255

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            VEN+P+GILTSKDILMRVI+QNL  +ST VEKVMTPNPECATIDTPIVDALH MHDGKF
Sbjct: 256 AVENRPKGILTSKDILMRVIAQNLHPESTPVEKVMTPNPECATIDTPIVDALHTMHDGKF 315

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVAT 268
           LHLPV+DRDG VV V DVIHITHAAVAT
Sbjct: 316 LHLPVIDRDGGVVAVADVIHITHAAVAT 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440540|ref|XP_004138042.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Cucumis sativus] gi|449520507|ref|XP_004167275.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Cucumis sativus]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/268 (91%), Positives = 257/268 (95%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTDKDIATRVIA  +NLEET VSKVMTRNP FVLSDTLA
Sbjct: 76  MAARRVDALLLTDSNALLCGILTDKDIATRVIACGINLEETSVSKVMTRNPVFVLSDTLA 135

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK 
Sbjct: 136 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKS 195

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTS+SGPNTFIETLRERMFRPSLSTIIPE  K+VT+ PT+TVLMATKKMLELR+SSAVV
Sbjct: 196 WGTSVSGPNTFIETLRERMFRPSLSTIIPENLKIVTVPPTETVLMATKKMLELRVSSAVV 255

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
           TV++KP+GILTSKDILMR+I+QNLP DSTLVEKVMTPNPECA+IDTPIVDALH MHDGKF
Sbjct: 256 TVDSKPQGILTSKDILMRLIAQNLPPDSTLVEKVMTPNPECASIDTPIVDALHTMHDGKF 315

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVAT 268
           LHLPVVDRDG+VV VVDVIHITHAAVAT
Sbjct: 316 LHLPVVDRDGNVVAVVDVIHITHAAVAT 343

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484915|gb|ABK94323.1| unknown [Populus trichocarpa]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/268 (89%), Positives = 254/268 (94%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTDKD+A+RVIA E+NLEETPVSKVMTRNP FVLSDTLA
Sbjct: 76  MAARRVDALLLTDSNALLCGILTDKDLASRVIAPEVNLEETPVSKVMTRNPVFVLSDTLA 135

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+
Sbjct: 136 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKN 195

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTSIS PNTFIETLRERMFRP+LSTIIPE SKVVT+SP++TVL+ TKKMLE R   AVV
Sbjct: 196 WGTSISVPNTFIETLRERMFRPALSTIIPENSKVVTVSPSETVLVVTKKMLESRSGCAVV 255

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
           TV+ KPRGI TSKDILMRVI+QNLP DSTLVEKVMTPNPECATIDTPIVDALH MHDGKF
Sbjct: 256 TVDEKPRGIFTSKDILMRVIAQNLPPDSTLVEKVMTPNPECATIDTPIVDALHTMHDGKF 315

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVAT 268
           LHLPVVDRDG++V V+DVIHITHAAVAT
Sbjct: 316 LHLPVVDRDGNIVAVIDVIHITHAAVAT 343

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122050|ref|XP_002318739.1| predicted protein [Populus trichocarpa] gi|222859412|gb|EEE96959.1| predicted protein [Populus trichocarpa]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/268 (89%), Positives = 254/268 (94%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTDKD+A+RVIA E+NLEETPVSKVMTRNP FVLSDTLA
Sbjct: 64  MAARRVDALLLTDSNALLCGILTDKDLASRVIAPEVNLEETPVSKVMTRNPVFVLSDTLA 123

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+
Sbjct: 124 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKN 183

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTSIS PNTFIETLRERMFRP+LSTIIPE SKVVT+SP++TVL+ TKKMLE R   AVV
Sbjct: 184 WGTSISVPNTFIETLRERMFRPALSTIIPENSKVVTVSPSETVLVVTKKMLESRSGCAVV 243

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
           TV+ KPRGI TSKDILMRVI+QNLP DSTLVEKVMTPNPECATIDTPIVDALH MHDGKF
Sbjct: 244 TVDEKPRGIFTSKDILMRVIAQNLPPDSTLVEKVMTPNPECATIDTPIVDALHTMHDGKF 303

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVAT 268
           LHLPVVDRDG++V V+DVIHITHAAVAT
Sbjct: 304 LHLPVVDRDGNIVAVIDVIHITHAAVAT 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147863576|emb|CAN79772.1| hypothetical protein VITISV_019408 [Vitis vinifera]

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 245/282 (86%), Positives = 259/282 (91%), Gaps = 3/282 (1%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNP FVLSDTLA
Sbjct: 76  MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPIFVLSDTLA 135

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+
Sbjct: 136 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKN 195

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTS+SGP+TFIETLRERMFRP+LSTIIPE SKVVT+SPTDTVL A KKMLEL+LS AVV
Sbjct: 196 WGTSLSGPSTFIETLRERMFRPALSTIIPENSKVVTVSPTDTVLTAAKKMLELKLSCAVV 255

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            VEN+P+GILTSKDILMRVI+QNL  +ST V  VMTPNPECATIDTPIVDALH MHDGKF
Sbjct: 256 AVENRPKGILTSKDILMRVIAQNLHPESTPV--VMTPNPECATIDTPIVDALHTMHDGKF 313

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVAT-EILLDQIMRQQAQ 281
           LHLPV+DRDG VV V DVIHITHAAVAT ++ L +    Q Q
Sbjct: 314 LHLPVIDRDGGVVAVADVIHITHAAVATVKLCLSKCCSSQQQ 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125528914|gb|EAY77028.1| hypothetical protein OsI_04983 [Oryza sativa Indica Group] gi|125573153|gb|EAZ14668.1| hypothetical protein OsJ_04591 [Oryza sativa Japonica Group]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 234/268 (87%), Positives = 253/268 (94%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDA+LLTDSNALLCGILTDKDI TRVIAREL LEETPVSKVMTRNP FVLSDTLA
Sbjct: 31  MAARRVDAVLLTDSNALLCGILTDKDITTRVIARELKLEETPVSKVMTRNPLFVLSDTLA 90

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH
Sbjct: 91  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 150

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WG S+SGPNTFIETLRERMFRPSLSTII E SKVVT++PTDTVL A+KKMLE+++SSAVV
Sbjct: 151 WGASVSGPNTFIETLRERMFRPSLSTIISENSKVVTVAPTDTVLTASKKMLEVKVSSAVV 210

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            +ENKP GILTS+DILMRVI+QNLP +ST VEKVMT  PECAT+DTPI+DALH MHDGKF
Sbjct: 211 AIENKPGGILTSRDILMRVIAQNLPPESTTVEKVMTQTPECATVDTPILDALHTMHDGKF 270

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVAT 268
           LHLPV+D+DG+VV VVDV+HITHAA+AT
Sbjct: 271 LHLPVLDKDGNVVTVVDVLHITHAAIAT 298

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126564|ref|XP_003564957.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Brachypodium distachyon]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/268 (86%), Positives = 253/268 (94%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDA+LLTDSNALLCGILTDKDI TRVIAREL LE+TPVSKVMTRNP FVLSDTLA
Sbjct: 85  MAARRVDAVLLTDSNALLCGILTDKDITTRVIARELKLEDTPVSKVMTRNPLFVLSDTLA 144

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH
Sbjct: 145 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 204

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGT++SGPNTF+ETLRERMFRPSLSTII E SKVVT++PTDTVL A+KKMLEL++SSAVV
Sbjct: 205 WGTAVSGPNTFVETLRERMFRPSLSTIISENSKVVTVAPTDTVLTASKKMLELKVSSAVV 264

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            +ENKP GILTS+DILMRVI+QNLP +ST VEKVMT +PECAT DTPI++ALH MHDGKF
Sbjct: 265 AIENKPGGILTSRDILMRVIAQNLPPESTTVEKVMTQSPECATTDTPILEALHTMHDGKF 324

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVAT 268
           LHLPV+D DG+VV V+DV+HITHAA+AT
Sbjct: 325 LHLPVLDSDGNVVTVIDVLHITHAAIAT 352

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326509897|dbj|BAJ87164.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/268 (85%), Positives = 251/268 (93%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDA+LLTDSNALLCGILTDKDI TRVIAREL LEETPVSKVMTRNP FVL DTLA
Sbjct: 85  MAARRVDAVLLTDSNALLCGILTDKDITTRVIARELKLEETPVSKVMTRNPLFVLGDTLA 144

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVV+NGEVIALLDIAKCLYDAIARMERAAEKG+AIAAAVEGVEKH
Sbjct: 145 VEALQKMVQGKFRHLPVVDNGEVIALLDIAKCLYDAIARMERAAEKGRAIAAAVEGVEKH 204

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTS+SGPNTF+ETLRERMFRPSL+TII E SKV T++PTDTVL A+KKMLEL++SSAVV
Sbjct: 205 WGTSVSGPNTFVETLRERMFRPSLATIISENSKVATVAPTDTVLTASKKMLELKVSSAVV 264

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            +ENKP GILTS+DILMRVI+QNLP +ST V KVMT +PECATIDTPI++ALH MHDGKF
Sbjct: 265 AIENKPGGILTSRDILMRVIAQNLPPESTTVGKVMTQSPECATIDTPILEALHTMHDGKF 324

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVAT 268
           LHLPV+DRDG VV VVDV+HITHAA+AT
Sbjct: 325 LHLPVLDRDGSVVTVVDVLHITHAAIAT 352

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
TAIR|locus:2167331	543	AT5G63490 "AT5G63490" [Arabido	0.953	0.493	0.705	3.3e-95
ASPGD|ASPL0000033419	666	AN5716 [Emericella nidulans (t	0.939	0.396	0.360	1.9e-36
CGD|CAL0003543	605	orf19.5238 [Candida albicans (	0.935	0.434	0.310	7.9e-29
POMBASE|SPAC24C9.05c	730	mug70 "conserved protein Mug20	0.362	0.139	0.366	2.7e-25
UNIPROTKB|Q48IU0	146	PSPPH_2494 "CBS domain protein	0.341	0.657	0.333	2.5e-09
UNIPROTKB|Q5LRC8	144	SPO2201 "CBS domain protein" [	0.359	0.701	0.295	3.3e-09
TIGR_CMR|SPO_2201	144	SPO_2201 "CBS domain protein"	0.359	0.701	0.295	3.3e-09
UNIPROTKB|Q5LLL6	174	Q5LLL6 "CBS domain protein" [R	0.345	0.557	0.323	7.3e-09
TIGR_CMR|SPO_A0034	174	SPO_A0034 "CBS domain protein"	0.345	0.557	0.323	7.3e-09
UNIPROTKB|Q0BYV1	144	HNE_2660 "CBS domain protein"	0.348	0.680	0.295	7.8e-08

TAIR|locus:2167331 AT5G63490 "AT5G63490" [Arabidopsis thaliana (taxid:3702)]

 Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
 Identities = 189/268 (70%), Positives = 213/268 (79%)

Query:     1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
             MA+RRVDALLLTDSN +LCGILTDKDIATRVI++ELN+EETPVSKVMT+NP FVLS+TLA
Sbjct:    79 MASRRVDALLLTDSNEMLCGILTDKDIATRVISQELNVEETPVSKVMTKNPMFVLSETLA 138

Query:    61 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERXXXXXXXXXXXXXXXXXH 120
             VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER                  
Sbjct:   139 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKS 198

Query:   121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
             WGT+ S PNTFIETLR+RMFRPSLSTIIP+ +KV+ +SPTDTVL   KKM+E + S AVV
Sbjct:   199 WGTNTSVPNTFIETLRDRMFRPSLSTIIPDDTKVLKVSPTDTVLTVAKKMVEFQSSCAVV 258

Query:   181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
              +E+K RGI TSKDILMRV+++NLP   TLVE VMT NPE   +DTPIV+ALHIMH+GKF
Sbjct:   259 IIEDKLRGIFTSKDILMRVVAENLPPSETLVETVMTQNPESTIVDTPIVEALHIMHEGKF 318

Query:   241 LHLPXXXXXXXXXXXXXXIHITHAAVAT 268
             LHLP              IH+THAAVAT
Sbjct:   319 LHLPVTDKEGDVVAVVDVIHVTHAAVAT 346

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

ASPGD|ASPL0000033419 AN5716 [Emericella nidulans (taxid:162425)]

 Score = 398 (145.2 bits), Expect = 1.9e-36, P = 1.9e-36
 Identities = 97/269 (36%), Positives = 146/269 (54%)

Query:     1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
             MAA+R D +L+TD +  + GI T KD+A RV+   L   +  VS++MT+NP    +DT A
Sbjct:   132 MAAKREDCVLVTDDDDRIAGIFTAKDLAFRVVGAGLKARDITVSEIMTKNPLCARTDTSA 191

Query:    61 VEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDAIARMERXXXXXXXXXXXXXXXXX 119
              +AL  MV+  FRHLPV+ EN ++  +LDI KC YDA+ ++ER                 
Sbjct:   192 TDALDLMVRKGFRHLPVMDENQDISGVLDITKCFYDAMEKLERAYSSSRKLYDALEGVQS 251

Query:   120 HWGTSISGPNT-FIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA 178
               G+S       ++E LR +M  P+L +++ +     T+S   TV  A   M E   ++ 
Sbjct:   252 ELGSSQPQQIIQYVEALRSKMSGPTLESVL-DGMPPTTVSVRTTVKEAAALMKEHHTTAL 310

Query:   179 VVTVENKPRGILTSKDILMRVISQNL-PADSTLVEKVMTPNPECATIDTPIVDALHIMHD 237
             +V  +    GI TSKDI++RVI+  L PA  ++V +VMTP+P+ A  D  I  AL  MHD
Sbjct:   311 LVQDQGSITGIFTSKDIVLRVIAPGLDPATCSVV-RVMTPHPDFAPSDMSIQAALRKMHD 369

Query:   238 GKFLHLPXXXXXXXXXXXXXXIHITHAAV 266
             G +L+LP              + +T+A +
Sbjct:   370 GHYLNLPVMNEGGEIVGMVDVLKLTYATL 398

GO:0006139 "nucleobase-containing compound metabolic process" evidence=RCA

GO:0003938 "IMP dehydrogenase activity" evidence=RCA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

CGD|CAL0003543 orf19.5238 [Candida albicans (taxid:5476)]

 Score = 327 (120.2 bits), Expect = 7.9e-29, P = 7.9e-29
 Identities = 83/267 (31%), Positives = 129/267 (48%)

Query:     1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
             M ARR + +L+ +    L GI T KD+A R++   LN  +  +  +MT+NP    +   A
Sbjct:    73 MTARRENCVLVVNEIGELLGIFTAKDVAFRIVGSGLNATQVTIDTIMTKNPICANAADPA 132

Query:    61 VEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDAIARMERXXXXXXXXXXXXXXXXX 119
              +AL  MV+  FRHLPV+ E  +++ +LDI K     + ++ER                 
Sbjct:   133 GDALNLMVERGFRHLPVLDEKSQIVGVLDITKSYAQQMEKLERMHSSSKKLHEALDSVHN 192

Query:   120 HWGTSISGPNTF--IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS 177
               G      + F   ETL+ +M  P+L   +   +    ++   +V  AT  M E R ++
Sbjct:   193 EIGVGEQPHHVFQYFETLKNKMNGPTLEDALDANTVPTYVNVKASVHEATMLMKENRTTA 252

Query:   178 AVVTVENKP-RGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMH 236
              +V   N+   GI TSKD+++RVI+  L      V +VMTP P+ A I  P+ DAL  M 
Sbjct:   253 VLVKDTNEQVAGIFTSKDVVLRVIAAGLDPKKCSVVRVMTPQPDVAPIGLPVQDALRKMF 312

Query:   237 DGKFLHLPXXXXXXXXXXXXXXIHITH 263
             DG +L+LP              + +TH
Sbjct:   313 DGHYLNLPVVANEGDIIGVVEVLKLTH 339

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

POMBASE|SPAC24C9.05c mug70 "conserved protein Mug20" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 182 (69.1 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
 Identities = 41/112 (36%), Positives = 67/112 (59%)

Query:     1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
             MAA+R + +L+ D +  L GI+T  DIATR +   LN  +T ++ +M+ +P  + SDT  
Sbjct:    89 MAAKRQNCVLVVDDDEQLAGIVTATDIATRCVGAGLNARQTLIADIMSTSPLCITSDTRF 148

Query:    61 VEALQKMVQGKFRHLPVV----------ENGEVIALLDIAKCLYDAIARMER 102
              +AL  M++ KFRHLPVV          + G+VI ++++  CL + + R+ R
Sbjct:   149 DDALLLMIEHKFRHLPVVSDGGPDGSAGDEGDVIGIINMRACLREPLNRIAR 200

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

UNIPROTKB|Q48IU0 PSPPH_2494 "CBS domain protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 139 (54.0 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 33/99 (33%), Positives = 57/99 (57%)

Query:     1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
             MA + + AL + + N ++ G+++++D A +VI +  +   TPV ++M+ N    +    +
Sbjct:    34 MAEKNIGALPVVEGNVVV-GVVSERDYARKVILKGRSSVGTPVREIMS-NKVITVDSQQS 91

Query:    61 VEALQK-MVQGKFRHLPVVENGEVIALLDIAKCLYDAIA 98
             VEA    M     RHLPVVE+G ++ LL I   + +AIA
Sbjct:    92 VEACMGIMTDSHLRHLPVVEDGRLLGLLSIGDLVKEAIA 130

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LRC8 SPO2201 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 138 (53.6 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 31/105 (29%), Positives = 57/105 (54%)

Query:     1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
             +A +R+  ++++D      GIL+++DI   + A        PVS  MT++      D   
Sbjct:    31 LAEKRIGTVVVSDDGETAQGILSERDIVRELAASGSGCLSEPVSTYMTKDLITCGRDAKV 90

Query:    61 VEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIARMER 102
              + L +M +G+FRH+PV+E G+++ L+   D+ K     +A ME+
Sbjct:    91 QDVLSQMTEGRFRHMPVIEEGKLVGLVTLGDVVKAQLAELA-MEK 134

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2201 SPO_2201 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 138 (53.6 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 31/105 (29%), Positives = 57/105 (54%)

Query:     1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
             +A +R+  ++++D      GIL+++DI   + A        PVS  MT++      D   
Sbjct:    31 LAEKRIGTVVVSDDGETAQGILSERDIVRELAASGSGCLSEPVSTYMTKDLITCGRDAKV 90

Query:    61 VEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIARMER 102
              + L +M +G+FRH+PV+E G+++ L+   D+ K     +A ME+
Sbjct:    91 QDVLSQMTEGRFRHMPVIEEGKLVGLVTLGDVVKAQLAELA-MEK 134

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LLL6 Q5LLL6 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 135 (52.6 bits), Expect = 7.3e-09, P = 7.3e-09
 Identities = 32/99 (32%), Positives = 55/99 (55%)

Query:     4 RRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRN-PTFVLSDTLAVE 62
             +R+ A+L+TD N  L GIL+++DI  R+              +MTR   T    +TL V 
Sbjct:    65 KRIGAVLVTDQNGALLGILSERDIVRRMADTPGQTLPQQAEGLMTRAVQTCAPDETLNV- 123

Query:    63 ALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
              L++M +G+FRHLPV+ +G++  ++ I   +   +  +E
Sbjct:   124 VLKRMTEGRFRHLPVMRDGKLCGMITIGDVVNFRLRELE 162

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_A0034 SPO_A0034 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 135 (52.6 bits), Expect = 7.3e-09, P = 7.3e-09
 Identities = 32/99 (32%), Positives = 55/99 (55%)

Query:     4 RRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRN-PTFVLSDTLAVE 62
             +R+ A+L+TD N  L GIL+++DI  R+              +MTR   T    +TL V 
Sbjct:    65 KRIGAVLVTDQNGALLGILSERDIVRRMADTPGQTLPQQAEGLMTRAVQTCAPDETLNV- 123

Query:    63 ALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
              L++M +G+FRHLPV+ +G++  ++ I   +   +  +E
Sbjct:   124 VLKRMTEGRFRHLPVMRDGKLCGMITIGDVVNFRLRELE 162

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0BYV1 HNE_2660 "CBS domain protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 126 (49.4 bits), Expect = 7.8e-08, P = 7.8e-08
 Identities = 29/98 (29%), Positives = 49/98 (50%)

Query:     4 RRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEA 63
             RR+ A++  D++  + G+L+++DI  +   +     + PV   MTR    + +D    EA
Sbjct:    33 RRIGAVVTLDADGEIVGVLSERDIVRQFARQGEGALDMPVGNAMTRAVITISADAEVDEA 92

Query:    64 LQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
             LQ M   + RHLPVV N  +   + I   +   IA  +
Sbjct:    93 LQLMTDRRIRHLPVVRNSRLTGFVSIGDLVKWKIAETQ 130

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0DH79	Y5064_ARATH	No assigned EC number	0.8134	0.9537	0.4890	yes	no
Q0WLC7	Y5053_ARATH	No assigned EC number	0.8134	0.9537	0.4890	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017958001 SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (541 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	281
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	6e-48
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	9e-34
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	2e-21
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	2e-21
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	5e-21
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	6e-21
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	3e-20
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	5e-18
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	1e-14
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	1e-13
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	2e-13
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	3e-13
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	4e-13
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	1e-12
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	2e-12
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	4e-11
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	4e-11
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	7e-11
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	7e-11
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	9e-11
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	1e-10
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	2e-10
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	2e-10
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	8e-10
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	1e-09
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	2e-09
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	7e-09
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	1e-08
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	2e-08
cd04589	111	cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd	3e-08
cd04625	112	cd04625, CBS_pair_12, The CBS domain, named after	4e-08
pfam00571	57	pfam00571, CBS, CBS domain	5e-08
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	7e-08
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	7e-08
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	8e-08
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	8e-08
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	1e-07
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	2e-07
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	2e-07
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	2e-07
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	3e-07
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	3e-07
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	5e-07
cd04610	107	cd04610, CBS_pair_ParBc_assoc, This cd contains tw	6e-07
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	7e-07
cd04630	114	cd04630, CBS_pair_17, The CBS domain, named after	7e-07
cd04620	115	cd04620, CBS_pair_7, The CBS domain, named after h	7e-07
cd04630	114	cd04630, CBS_pair_17, The CBS domain, named after	9e-07
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	1e-06
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	2e-06
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	4e-06
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	5e-06
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	5e-06
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	6e-06
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	8e-06
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	1e-05
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	1e-05
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	1e-05
pfam00571	57	pfam00571, CBS, CBS domain	2e-05
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	2e-05
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	2e-05
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	3e-05
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	4e-05
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	4e-05
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	5e-05
cd04620	115	cd04620, CBS_pair_7, The CBS domain, named after h	6e-05
pfam00571	57	pfam00571, CBS, CBS domain	7e-05
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	7e-05
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	9e-05
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	9e-05
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	9e-05
cd04617	118	cd04617, CBS_pair_4, The CBS domain, named after h	9e-05
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	1e-04
cd04625	112	cd04625, CBS_pair_12, The CBS domain, named after	2e-04
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	2e-04
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	2e-04
cd04589	111	cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd	3e-04
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	3e-04
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	3e-04
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	3e-04
cd04619	114	cd04619, CBS_pair_6, The CBS domain, named after h	4e-04
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	4e-04
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	5e-04
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	7e-04
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	7e-04
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	8e-04
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	8e-04
PRK10892	326	PRK10892, PRK10892, D-arabinose 5-phosphate isomer	0.001
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	0.002
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	0.002
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	0.003
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	0.003
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	0.003
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	0.003
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	0.004
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	0.004
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	0.004
cd04643	116	cd04643, CBS_pair_30, The CBS domain, named after	0.004

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score =  155 bits (393), Expect = 6e-48
 Identities = 65/113 (57%), Positives = 82/113 (72%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
           +K  T+SPT TV  A K M E R+S  +V   NK  GI TSKDI +RV++Q L  +STLV
Sbjct: 1   TKPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLV 60

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
           E+VMTPNP CAT DTP+++ALH+M  GKF HLPVVD+ G VV ++DV  +THA
Sbjct: 61  ERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTHA 113

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score =  118 bits (298), Expect = 9e-34
 Identities = 50/96 (52%), Positives = 64/96 (66%), Gaps = 2/96 (2%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M  +RV  +L+ D N L  GI T KDIA RV+A+ L+ E T V +VMT NP    SDT  
Sbjct: 19  MREKRVSCVLVMDGNKL-VGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPV 77

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYD 95
           +EAL  MVQGKFRHLPVV ++G+V+ LLD+ K  + 
Sbjct: 78  LEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTHA 113

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 86.4 bits (215), Expect = 2e-21
 Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 2/104 (1%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
             VT SP  T+  A + M E R+SS +V  + +  GI+T +D+  RV+++ L  D T V 
Sbjct: 2   PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLDPD-TPVS 60

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           +VMT  P     D  + +AL +M +    HLPVVD DG +V V+
Sbjct: 61  EVMTAPPITIPPDATVFEALLLMLERGIHHLPVVD-DGRLVGVI 103

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 86.0 bits (214), Expect = 2e-21
 Identities = 33/89 (37%), Positives = 55/89 (61%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MA + + A+++ D    L GI +++DI  +V  R  +  +TPVS++MTRN   V  D   
Sbjct: 19  MAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTV 78

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDI 89
            EA+  M + +FRHLPVV+ G+++ ++ I
Sbjct: 79  DEAMALMTERRFRHLPVVDGGKLVGIVSI 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 85.2 bits (212), Expect = 5e-21
 Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 2/84 (2%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M   RV +LL+ D +  L GI+TD+D+  RV+A  L+ + TPVS+VMT  P  +  D   
Sbjct: 19  MTEHRVSSLLVVD-DGRLVGIVTDRDLRNRVVAEGLDPD-TPVSEVMTAPPITIPPDATV 76

Query: 61  VEALQKMVQGKFRHLPVVENGEVI 84
            EAL  M++    HLPVV++G ++
Sbjct: 77  FEALLLMLERGIHHLPVVDDGRLV 100

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 85.2 bits (212), Expect = 6e-21
 Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 2/105 (1%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVT-VENKPRGILTSKDILMRVISQNLPADSTLV 211
            V+T+ P  TV  A K M E  + + VV     +  GI + +DI+ +V  +   A  T V
Sbjct: 2   DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPV 61

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            ++MT N    T D  + +A+ +M + +F HLPVVD  G +V +V
Sbjct: 62  SEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVD-GGKLVGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 82.9 bits (206), Expect = 3e-20
 Identities = 36/105 (34%), Positives = 58/105 (55%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
             VVT+SP DT+  A + M E  + +  V   ++  GI+T +DI++R +++    D+T V
Sbjct: 1   RDVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTV 60

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
             VMT      T D  + +A  +M + +   LPVVD DG +V +V
Sbjct: 61  GDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 77.5 bits (191), Expect = 5e-18
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 2/106 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 210
             VVT+SP DTV  A + MLE  +S   V  ++ +  GI+T +D+ +R +++        
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDL-LRALAEGGLDPLVT 59

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           V  VMT +    + DT + +A  +M +     LPVVD +G +V +V
Sbjct: 60  VGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 68.3 bits (168), Expect = 1e-14
 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M+ + +    + D +  L GI TD D+  R + + L++   PV+ VMTRNP  +  D LA
Sbjct: 20  MSRKGLGMTAVVDEDGRLVGIFTDGDLR-RALEKGLDILTLPVADVMTRNPKTIDPDALA 78

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALLDI 89
            EAL+ M + K   LPVV +NG  + +L I
Sbjct: 79  AEALELMEENKITALPVVDDNGRPVGVLHI 108

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 66.0 bits (161), Expect = 1e-13
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
              V+T+ P  +V  A   M E  +S+  V  + K  GI+T +DIL  + +         
Sbjct: 6   TKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGG--KRLLP 63

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDG-KFLHLPVVDRDGDVVDVVDVIHIT 262
           V++VMT        DTP+ +AL +M +  K   LPVVD DG    +V +I ++
Sbjct: 64  VKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGG--KLVGIITLS 114

Length = 117

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 10/114 (8%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVIS---------Q 202
             V+T+SP D V  A + ML+  +S   V    K  GI+T KDI   + S         Q
Sbjct: 1   KPVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRDRHQ 60

Query: 203 NLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                +  V  +MT        DT + D   +M +     LPVVD DG +V +V
Sbjct: 61  ERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD-DGKLVGIV 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 64.4 bits (158), Expect = 3e-13
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    V AL + +++ L+ GI+TD+DI  R +A   + + T V  VMTR    V  D   
Sbjct: 19  MREHDVGALPVCENDRLV-GIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDV 77

Query: 61  VEALQKMVQGKFRHLPVVENGE----VIALLDIAKC 92
            EA + M + + R LPVV++      +++L D+A+ 
Sbjct: 78  DEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLARA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 64.1 bits (157), Expect = 4e-13
 Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 5/110 (4%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 213
           ++T  P  ++  A  +M E R+SS VV  + +P GI+T +DIL R+++      + + E 
Sbjct: 3   ILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDIL-RLLASGPDLQTPVGE- 60

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIH 260
           VM+        DT + DA  +M +    HL VVD DG+++ ++   D++ 
Sbjct: 61  VMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    V +L++ D +  L GI+T KD+ +RVIA +   +   VS+VMT     V      
Sbjct: 175 MKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIA-DGRSKTQKVSEVMTSPVISVDRGDFL 233

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCL 93
            EA+  M++ + +HLPV E+G+ + +L +   L
Sbjct: 234 FEAMLMMLRNRIKHLPVTEDGQPLGILTLTDIL 266

Length = 610

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 6/96 (6%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MA   V ++++ D +    GI+T++DI  R +A  ++L+ TPVS++MTR+   V  D   
Sbjct: 19  MAEENVGSVVVVDPDERPIGIVTERDI-VRAVAAGIDLD-TPVSEIMTRDLVTVDPDEPV 76

Query: 61  VEALQKMVQGKFRHLPVVENGE----VIALLDIAKC 92
            EA + M +   RH  VV+ G     VI++ D+ + 
Sbjct: 77  AEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVRE 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 58.4 bits (142), Expect = 4e-11
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 3/106 (2%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTL 210
             VVT+ P  ++  A K M E  + S VV   + +P GI+T +DI+ R ++  +    T 
Sbjct: 1   RPVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIV-RAVAAGID-LDTP 58

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           V ++MT +      D P+ +A  +M      H  VVD+ G++V V+
Sbjct: 59  VSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVI 104

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 58.8 bits (143), Expect = 4e-11
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 9/113 (7%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ---------N 203
             +T++P  +++ A K M E  +    V    K  GI+T +D+ +   S+          
Sbjct: 2   NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATTLDIWELY 61

Query: 204 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                  V  +MT +P   + D  + +A  +M + K   LPVVD  G +V ++
Sbjct: 62  YLLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGII 114

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 57.8 bits (140), Expect = 7e-11
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 1/109 (0%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 213
           V+T+ P  TV  A   M E  +   +V    KP GI+T +D++ +V+S+NL      V +
Sbjct: 3   VITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGE 62

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 262
           VM+        +  + +A  +M       LPVVD D ++V +V    I 
Sbjct: 63  VMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVD-DDELVGIVTTTDIV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 58.5 bits (142), Expect = 7e-11
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 21/125 (16%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL- 210
            V+T+   DT+    + +L  ++S   VV  E +  GI++  D++ ++         TL 
Sbjct: 2   DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLL 61

Query: 211 ------------------VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV 252
                             VE++MT        DT I D   IM       LPVVD DG +
Sbjct: 62  YSVIFLDESKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-DGKL 120

Query: 253 VDVVD 257
           V ++ 
Sbjct: 121 VGIIS 125

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 57.4 bits (139), Expect = 9e-11
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    +  L + D +  L GI+T++D+  R +A         V  VMTR+   V  DT  
Sbjct: 19  MLEHGISGLPVVDDDGRLVGIVTERDLL-RALAEGGLDPLVTVGDVMTRDVVTVSPDTSL 77

Query: 61  VEALQKMVQGKFRHLPVVENGE----VIALLDIAK 91
            EA + M++   R LPVV++      ++   DI +
Sbjct: 78  EEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 57.5 bits (140), Expect = 1e-10
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 3/102 (2%)

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTLVEK 213
           + +SP  ++L A +K+ +  L   +V  EN +  G +T  DI  R + + L  D   V +
Sbjct: 5   LLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDI-RRALLKGLSLDDP-VSE 62

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDV 255
           VM  NP  A + +   + L +M +    HLP++D +G VV +
Sbjct: 63  VMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGL 104

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLV 211
             VT+SP  ++  A +KM +  +SS VV        GI+T KD+  RVI+         V
Sbjct: 158 PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQK-V 216

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI 261
            +VMT           + +A+ +M   +  HLPV + DG  + ++ +  I
Sbjct: 217 SEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDI 265

Length = 610

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 9   LLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMV 68
           +L+ D N  L G +TD DI  R + + L+L+  PVS+VM RNP      +   E L  M 
Sbjct: 28  VLVVDENGRLLGTVTDGDI-RRALLKGLSLD-DPVSEVMNRNPITAKVGSSREEILALMR 85

Query: 69  QGKFRHLPVV-ENGEVIALLDI 89
           +   RHLP++ E G V+ L  +
Sbjct: 86  ERSIRHLPILDEEGRVVGLATL 107

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 55.0 bits (133), Expect = 8e-10
 Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 9/114 (7%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPAD--- 207
           S VVT+S  D++  A + M E R+    VV  + K  G+LT +D+L   +S         
Sbjct: 1   SPVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEES 60

Query: 208 -----STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                   V +VM  +    T DTP+ +A  IM + K   LPVVD  G +V ++
Sbjct: 61  LTKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGII 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 54.4 bits (132), Expect = 1e-09
 Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 5/100 (5%)

Query: 161 DTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE 220
           D +L  ++K L +   +AVV  + +  GI T  D L R + + L   +  V  VMT NP+
Sbjct: 15  DALLEMSRKGLGM---TAVVDEDGRLVGIFTDGD-LRRALEKGLDILTLPVADVMTRNPK 70

Query: 221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH 260
               D    +AL +M + K   LPVVD +G  V V+  IH
Sbjct: 71  TIDPDALAAEALELMEENKITALPVVDDNGRPVGVLH-IH 109

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 53.3 bits (129), Expect = 2e-09
 Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 4/88 (4%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M  RR+ ++++ D    L GI+T++DI  R++A   +L+ TPV +VM+     V +DT  
Sbjct: 19  MRERRISSIVVVDDGRPL-GIVTERDIL-RLLASGPDLQ-TPVGEVMSSPLLTVPADTSL 75

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL 87
            +A Q M +   RHL VV ++GE++ LL
Sbjct: 76  YDARQLMREHGIRHLVVVDDDGELLGLL 103

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 52.1 bits (126), Expect = 7e-09
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 8/99 (8%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
            +T+SP  TV  A + M E  +S   VV  + K  GI+T++D  +R  +         V 
Sbjct: 4   PITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRD--LRFETD----LDKPVS 57

Query: 213 KVMTPNPECAT-IDTPIVDALHIMHDGKFLHLPVVDRDG 250
           +VMTP     T   T + +AL ++H+ K   LPVVD +G
Sbjct: 58  EVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEG 96

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 11/114 (9%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL------PA 206
           +VVT+   D +    +   + +    +V  +N+  G+++ +D L + IS  L        
Sbjct: 2   RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYL-KAISPFLGTAGETEK 60

Query: 207 D----STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           D    +    ++MT +P   + DTP+ +A  ++ +     LPVVD +G ++ ++
Sbjct: 61  DLATLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGII 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 20/112 (17%)

Query: 155 VTISPTDTVLMATKKMLELR----LSSAVVTVENKPR----GILTSKDILMRVISQNLPA 206
             +SP  TV      +LE++     SS ++TV+ K      GI+TS+DI        +  
Sbjct: 107 YVLSPNHTV----ADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID------FVKD 156

Query: 207 DSTLVEKVMTPNPECATIDTPIV--DALHIMHDGKFLHLPVVDRDGDVVDVV 256
            ST V +VMTP  +    +TPI   +A  ++ + +   LP+V+ +G++V +V
Sbjct: 157 KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALV 208

Length = 495

>gnl|CDD|239962 cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 2/105 (1%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
             + +  + ++  A + M E    + +V   +   GI+T  D+L  V+   LP+ ST V 
Sbjct: 2   PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLLDGLPS-STPVG 60

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVD 257
           ++ T        D  + +AL +M   + +H  VV   G+VV V++
Sbjct: 61  EIATFPLITVDPDDFLFNALLLMTRHR-IHRVVVREGGEVVGVLE 104

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239997 cd04625, CBS_pair_12, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 156 TISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVM 215
           T++P   +  A   M E  L S VV    +  G+LT +++L  +         T V  +M
Sbjct: 5   TVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIM 64

Query: 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            P P  A+ D  I +   +M +    +LPV+D  G ++ V+
Sbjct: 65  NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVI 104

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 48.3 bits (116), Expect = 5e-08
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
           V+ +MTP+      DT + +AL +M +     LPVVD DG +V +V +  +  A
Sbjct: 1   VKDIMTPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRA 54

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 3/106 (2%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
             K++T+ P DT+  A K   E  +  A V  ++K  GI+T  DI   + + NL A    
Sbjct: 179 SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANGNLDAK--- 235

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           V   M  N      D  I DA+ +M+      L V D +G  V ++
Sbjct: 236 VSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGII 281

Length = 294

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 10/113 (8%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRV-------ISQNLP 205
           VVT++P  ++  A   +   R+ +  VV  + +  GI+T +D+L          +   L 
Sbjct: 4   VVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLR 63

Query: 206 ADST--LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                  V  +M+P       DTPI + + ++ DG   H+PVVD D  +V +V
Sbjct: 64  GRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIV 116

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 49.9 bits (120), Expect = 8e-08
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 23/127 (18%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 210
           + VVT+SP  +V  A + ML+  +S   VV  + +  GI++  D+L R         +  
Sbjct: 2   TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARW 61

Query: 211 ---------------------VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD 249
                                V  VMT        DTP+ +   +M + +   +PVV R 
Sbjct: 62  LDLLAGAEELAAAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVV-RG 120

Query: 250 GDVVDVV 256
           G +V +V
Sbjct: 121 GRLVGIV 127

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 49.2 bits (118), Expect = 8e-08
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 6/112 (5%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
             VVTIS   ++  A K M+E  ++   VV  + +  GI+TS D     IS+ +  D   
Sbjct: 2   RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWD-----ISKAVARDKKS 56

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 262
           VE +MT N   AT D PI  A   M       LPVVD +  V+ ++    I+
Sbjct: 57  VEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDIS 108

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 11/121 (9%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL--MRVISQNLPA-- 206
             VVTI+PT T+  A + M E ++    VV  E +  GI+T +D+          L    
Sbjct: 1   RDVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHE 60

Query: 207 ----DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV--VDVVDVIH 260
                   V+++MT +         + +A  +M + +   LPVV+    V  +   D++ 
Sbjct: 61  LYLLLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLLR 120

Query: 261 I 261
            
Sbjct: 121 T 121

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 11/110 (10%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR----GILTSKDILMRVISQNLPAD 207
           S  VTISP  TV    + M    +S   V  +        GI+T +DI      + +   
Sbjct: 88  SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDI------RFVKDK 141

Query: 208 STLVEKVMTP-NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
              V +VMT            + +AL ++H+ +   LPVVD++G++V ++
Sbjct: 142 GKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLI 191

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 47.9 bits (115), Expect = 2e-07
 Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVT-VENKPRGILTSKDILMRVISQNLPADSTLV 211
             VTI+P  T+  A K M + ++ S +V   +NK  GI++ + +      +    ++  +
Sbjct: 3   NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESL------EQAYKEAKSL 56

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           E +M  +      D  + D L ++      ++PVVD DG +V ++
Sbjct: 57  EDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLI 101

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 9/114 (7%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMR--------VISQN 203
           + VT +P D V      MLE   +   VV    +  GI+T +DI+             + 
Sbjct: 2   EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRT 61

Query: 204 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVD 257
               S  VEK+M+      T D  I  A+ +M +     LPVV+    +V +VD
Sbjct: 62  QTKASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVD 115

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 10/93 (10%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIA-RELNLEET--------PVSKVMTRNP 51
           M    +  L + +   L+ GI+T+KDIA  + + R L  +          PVS +MTR  
Sbjct: 19  MLDHDISRLPVIEGGKLV-GIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPV 77

Query: 52  TFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 84
             +  DT   +    M++     LPVV++G+++
Sbjct: 78  ITIEPDTSVSDVASLMLENNIGGLPVVDDGKLV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 16/103 (15%)

Query: 154 VVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
            VT++P  T+  A   M    +S   VV    K  GI+T++D  +R  +      S  V 
Sbjct: 97  PVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRD--VRFETD----LSQPVS 150

Query: 213 KVMTPN-----PECATIDTPIVDALHIMHDGKFLHLPVVDRDG 250
           +VMT       PE  T++    +AL ++H+ +   LPVVD +G
Sbjct: 151 EVMTKERLVTVPEGTTLE----EALELLHEHRIEKLPVVDDNG 189

Length = 486

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 47.2 bits (113), Expect = 5e-07
 Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
             VVT+    TV      M   R     V  + +  GI+T  DI  R +       + LV
Sbjct: 1   PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADI--RRVPAEGREATVLV 58

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
             VMT +P  A+ D  + DAL  M +     LPVVD  G +V +V
Sbjct: 59  GDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIV 103

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
            V+T+SP +TV    K + E       V    K  GI++++D+L +            VE
Sbjct: 3   DVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK-------DPDETVE 55

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 259
           ++M+ +   A  +  I+DA  +M       LPVVD + ++V ++   DVI
Sbjct: 56  EIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVI 105

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 46.8 bits (112), Expect = 7e-07
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDI--ATRVIARELN------LEETPVSKVMTRNPT 52
           M   ++  L + D    L GI+TD+D+  A+      L+      L + PV ++MT++  
Sbjct: 19  MREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVI 78

Query: 53  FVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL 87
            V       EA   M + +   LPVVE+G ++ ++
Sbjct: 79  TVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGII 113

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|240001 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 9/117 (7%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR-----GILTSKDILMRVISQNLPAD 207
            VVTI    TV  A + M E  +SS VV    K R     GI+T +DIL +V+++    D
Sbjct: 2   NVVTIDGLATVAEALQLMKEHGVSSLVV---EKRRESDAYGIVTMRDILKKVVAEGRDPD 58

Query: 208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
              V ++MT      + D  I     +M        PVV+ + +++ ++ +  I  A
Sbjct: 59  RVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVE-NNELIGIISLTDIFLA 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239992 cd04620, CBS_pair_7, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 4/104 (3%)

Query: 156 TISPTDTVLMATKKMLELRLSSAVVTVENKP-RGILTSKDILMRVISQNLPADSTLVEKV 214
           T++P   V  A   M +   SS V+ VE     GI T +DI+ R+ +         + +V
Sbjct: 5   TVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIV-RLTAIGKDLSDLPIGEV 63

Query: 215 MTPNPECATID--TPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           MT             I  AL +    +  HLPV+D  G ++ +V
Sbjct: 64  MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLV 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 115

>gnl|CDD|240001 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.5 bits (111), Expect = 9e-07
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 20  GILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVE-ALQKMVQGKFRHLPVV 78
           GI+T +DI  +V+A   + +   V ++MT+ P   +S  + ++   + M +   R  PVV
Sbjct: 39  GIVTMRDILKKVVAEGRDPDRVNVYEIMTK-PLISVSPDMDIKYCARLMERTNIRRAPVV 97

Query: 79  ENGEVIALLD 88
           EN E+I ++ 
Sbjct: 98  ENNELIGIIS 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDIL---MRVISQNLPADS- 208
           VVT+S   ++  A K + E R+ +  V  E+ +  GI+T +D+L        Q L     
Sbjct: 255 VVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRP 314

Query: 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIH 260
             V+ +MT        DTP V+ +  + D     LPV+D  G +V +V   D+I 
Sbjct: 315 PTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIA 369

Length = 382

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 22/78 (28%), Positives = 43/78 (55%)

Query: 10  LLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQ 69
           L+   N    GI+T++D+  +V++R L   E PV +VM+     +  +    EA + M +
Sbjct: 27  LIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEAAKLMAK 86

Query: 70  GKFRHLPVVENGEVIALL 87
              + LPVV++ E++ ++
Sbjct: 87  HGIKRLPVVDDDELVGIV 104

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 39/155 (25%)

Query: 49  RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE-----VIALLDIAKCLYDAIARMER- 102
           ++   V   T  +EA + MV+  FR LPVV+ G      +I   DI K L       E+ 
Sbjct: 1   KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYL----GGGEKF 56

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
              K      A+                  E +R  M              V+TI+P D+
Sbjct: 57  NKIKTGNGLEAIN-----------------EPVRSIM-----------TRNVITITPDDS 88

Query: 163 VLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL 196
           +  A + MLE R+    VV  + K  GI+T +D+L
Sbjct: 89  IKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M+   V A+ + D   L+ GI+T++DI   + A    L   PV +VMT+    V  DT  
Sbjct: 25  MSENGVSAVPVVDDGKLV-GIITERDILRALAAGGKRL--LPVKEVMTKPVVTVDPDTPL 81

Query: 61  VEALQKMVQG-KFRHLPVVENGE 82
            EAL+ MV+  K R LPVV++  
Sbjct: 82  EEALELMVERHKIRRLPVVDDDG 104

Length = 117

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 44.1 bits (105), Expect = 5e-06
 Identities = 20/88 (22%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M  ++VD+LL+ D +  L GI++ + +       +   E   +  +M  +   V  D   
Sbjct: 20  MRDKKVDSLLVVDKDNKLLGIVSLESL------EQAYKEAKSLEDIMLEDVFTVQPDASL 73

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL 87
            + L  +++   +++PVV E+G+++ L+
Sbjct: 74  RDVLGLVLKRGPKYVPVVDEDGKLVGLI 101

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.1 bits (105), Expect = 6e-06
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 155 VTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADST-LVE 212
           VT +P  +V  A +K+L+ ++S   VV       G L+ +D L +++  +   D    V 
Sbjct: 4   VTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVR 63

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            +MT      + D  IVD   +M   K    PVVD DG +V  +
Sbjct: 64  DIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-DGKLVGQI 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 10/127 (7%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
           +  VT+SP  TV  A +      +S   VT + K  G L        +           V
Sbjct: 90  TDPVTVSPDTTVAEALELKERYGISGVPVTEDGKLLGGLVGIRTSRDI----DFLSKVSV 145

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIHITHAA 265
              MT +   A     + +A  I+H+ K   LP+VD DG++V      D+       +A+
Sbjct: 146 VMTMTEDLVTAPEGITLEEANEILHEHKIEKLPIVDDDGELVGLITRKDIEKARDYPNAS 205

Query: 266 VATEILL 272
              +  L
Sbjct: 206 KDAQGRL 212

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDV---VDVIHI 261
            A  DTP++D L ++ + +   LP+VD +G VVDV    DVI++
Sbjct: 5   TARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINL 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 7/73 (9%)

Query: 18  LCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPV 77
           L GI+T KD+         N EE  ++ +MTR+P  V  D    EA + MV+   R +PV
Sbjct: 36  LVGIITRKDLLR-------NPEEEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPV 88

Query: 78  VENGEVIALLDIA 90
           V++G+++ ++ +A
Sbjct: 89  VDDGKLVGIVTVA 101

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 213
           VV+++P DTV  A ++M E  +S   V  + +  G +   D+L  +I       S  V +
Sbjct: 3   VVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEGK-AKFSLPVRE 61

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 259
           VM         D PI +   ++  G      VVD  G  V ++   D++
Sbjct: 62  VMGEPLPTVDPDAPIEELSELLDRG--NVAVVVDEGGKFVGIITRADLL 108

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYD 95
          V  +MT +   V  DT   EAL+ M +     LPVV E+G+++ ++   D+ + L +
Sbjct: 1  VKDIMTPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 12/116 (10%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVT--VENKPRGILTSKDILMRVISQN------- 203
            VVT+ PT  ++ A K M+        V      K  GI+T+ DIL  +           
Sbjct: 2   DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKT 61

Query: 204 ---LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
              L A +  V  +MT N    T D  I DA  +M + +   LPVVD DG +V +V
Sbjct: 62  GNGLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIV 117

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 11/111 (9%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
               ++ TDTV    +   E   S   VV  +NK  GI+TSKD+  +          T +
Sbjct: 3   DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK-------DPDTTI 55

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 259
           EKVMT NP      T +    H+M       LPVVD +  ++ ++   DV+
Sbjct: 56  EKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVL 106

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 9/105 (8%)

Query: 156 TISPTDTVLMATKKMLELRLSSAVVTVENKP-RGILTSKDI---LMRVISQNLPADSTLV 211
            I+PT +   A  +M E RL SA+V  EN    G+ T  D+   L+   S         V
Sbjct: 168 LIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGSLKSE-----V 222

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
              MT  P+   +D  +++AL  +   K   L VVD    V+ V+
Sbjct: 223 RDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL 267

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 13  DSNALLCGILTDKDIATRVI-ARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGK 71
           D N  L G L+++D   +++ +         V  +MT     V  D   V+  Q M++ K
Sbjct: 31  DDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAK 90

Query: 72  FRHLPVVENGEVIALL 87
            +  PVV++G+++  +
Sbjct: 91  PKRYPVVDDGKLVGQI 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 12/108 (11%)

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPR----GILTSKDILMRVISQNLPADSTL 210
             +SP  TV    +   +   S   VT + K      GI+TS+DI        L    T 
Sbjct: 5   SVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDI------DFLTDSETP 58

Query: 211 VEKVMTPNPECATIDTPIV--DALHIMHDGKFLHLPVVDRDGDVVDVV 256
           + +VMTP        T I   +A  I+ + K   LP+V+ DG++V +V
Sbjct: 59  LSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALV 106

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 41.3 bits (98), Expect = 5e-05
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 19/116 (16%)

Query: 156 TISPTDTVLMATKKMLELRLSSA------VVTVENKPRGILTSKDILMRVISQNLPADST 209
            +    TV  A + +              VV  E +  G+++ +D+L+           T
Sbjct: 1   AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA-------DPDT 53

Query: 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVI 259
            V  +M  +    + D    +   +      L LPVVD +G +V      DV+DVI
Sbjct: 54  PVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDVI 109

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239992 cd04620, CBS_pair_7, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 18  LCGILTDKDIATRVIARELNLEETPVSKVMTRN-PTFVLSDTL-AVEALQKMVQGKFRHL 75
           L GI T++DI  R+ A   +L + P+ +VMT+   T   S+      AL    Q + RHL
Sbjct: 36  LLGIFTERDI-VRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHL 94

Query: 76  PVVENGE 82
           PV+++  
Sbjct: 95  PVLDDQG 101

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 115

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 39.5 bits (93), Expect = 7e-05
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVIS 201
             VVT+ P  ++  A + M E  +S   V  E+ K  GI+T +D+L  ++ 
Sbjct: 7   PDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 13 DSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKF 72
          D    + GI+T KD+A +         +T + KVMT+NP  V   T        M+    
Sbjct: 32 DEKNKVVGIVTSKDVAGK-------DPDTTIEKVMTKNPITVNPKTSVASVAHMMIWEGI 84

Query: 73 RHLPVVEN 80
            LPVV++
Sbjct: 85 EMLPVVDD 92

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 11/97 (11%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDI-------ATRVIARELN--LEETPVSKVMTRNP 51
           M    +  L + D   L+ GI+TD+D+       AT +   EL   L +  VS +MTR+P
Sbjct: 19  MKENSIRRLPVVDRGKLV-GIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDP 77

Query: 52  TFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALL 87
             V  D    EA + M++ K   LPVV+  G ++ ++
Sbjct: 78  ITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGII 114

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M+ +R+ + ++ D N  L G+ TD D+  R         ++ V   MT  P     D L 
Sbjct: 182 MSEKRLGSAIVCDENNQLVGVFTDGDL--RRALLGGGSLKSEVRDFMTLGPKTFKLDALL 239

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL 87
           +EAL+ + + K   L VV ++ +V+ +L
Sbjct: 240 LEALEFLERRKITSLVVVDDHNKVLGVL 267

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 40.6 bits (96), Expect = 9e-05
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 10 LLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQ 69
           + D +  L GI++  DI   ++      +    S +MT+ P  V  +    +AL+K   
Sbjct: 28 PVVDDDGRLVGIVSLDDIRE-ILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDALKKFED 86

Query: 70 GKFRHLPVVENGE 82
            +  LPVV++  
Sbjct: 87 SDYEQLPVVDDDP 99

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239989 cd04617, CBS_pair_4, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 6  VDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNP--TFVLSDTLAVEA 63
          V +L + D +  L G+++ KD+    I    +L++ PV  +MTR P  T    +   +EA
Sbjct: 24 VGSLFVVDEDGDLVGVVSRKDLLKASIGGA-DLQKVPVGVIMTRMPNITTTTPEESVLEA 82

Query: 64 LQKMVQGKFRHLPVVEN 80
           +K+++ +   LPVVE 
Sbjct: 83 AKKLIEHQVDSLPVVEK 99

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 118

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDIL 196
             +T+SP   V  A+K +LE  +S   VV    +  GI+T KD+L
Sbjct: 76  DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239997 cd04625, CBS_pair_12, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 18  LCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPV 77
           L G+LT +++   +      + +T V  +M   P     D    E  + MV+   R+LPV
Sbjct: 35  LVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPV 94

Query: 78  VENGE---VIALLDIAK 91
           ++ G    VI+  D+AK
Sbjct: 95  LDGGTLLGVISFHDVAK 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 18 LCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPV 77
          L GI+T  DI  R +  E       V  VMTR+P     D    +AL++M +     LPV
Sbjct: 35 LVGIVTLADI--RRVPAEGREATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPV 92

Query: 78 VEN 80
          V++
Sbjct: 93 VDD 95

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
            ++T++P  T+  A +      +  A V  + K  GI+T  DI    I++ L      V+
Sbjct: 2   PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAH-AIARGLE--LAKVK 58

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHI 261
            VMT +      D  + DA+ +M+      L V D +G  V ++   D++  
Sbjct: 59  DVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILRS 110

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239962 cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M     DALL+ D +  L GI+T  D+    +  +     TPV ++ T     V  D   
Sbjct: 19  MREHGADALLVRDGDPRL-GIVTRTDL-LDAVLLDGLPSSTPVGEIATFPLITVDPDDFL 76

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLD 88
             AL  M + +   + V E GEV+ +L+
Sbjct: 77  FNALLLMTRHRIHRVVVREGGEVVGVLE 104

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 58/263 (22%), Positives = 98/263 (37%), Gaps = 47/263 (17%)

Query: 40  ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE----VIALLDIAKCLYD 95
           +  V  +    P  V  DT   EA   M +   + LPVV+       +++L D+A+   D
Sbjct: 67  KPQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMD 126

Query: 96  A--IARMERAAEKGKAIAAAVEGVEKHWGTSISG-PNTFIETLRER---MFRPSLSTIIP 149
                 + ++    + I   ++      G  + G     +E  +     M   SL   I 
Sbjct: 127 ILDPEILSKSPTSLENIIRTLD------GEVLVGAEEDKVEEGKVVVAAMAPESLLERIE 180

Query: 150 EKSKVVTISPTDTVLMATKKMLELRLSSAVVT--------VENKPRG-----ILTSKD-- 194
           E   V+     D  L A    +E  +   ++T        V    +      I T  D  
Sbjct: 181 EGDIVIVGDREDIQLAA----IEAGVRLLIITGGAPVSEDVLELAKENGVTVISTPYDTF 236

Query: 195 ILMRVISQNLPADSTLVEKVM-TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
              R+I+Q++P     V  +M T +    + D  + D   +M   ++   PVVD DG VV
Sbjct: 237 TTARLINQSIP-----VSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVV 291

Query: 254 DVV---DVIHITHAAVATEILLD 273
            V+    ++      V   IL+D
Sbjct: 292 GVISRYHLLSPVRKKV---ILVD 311

Length = 546

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 35/143 (24%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN------LP 205
              +T +  DT+  A + + E ++S A V    K  GI++  DIL  +++ +      LP
Sbjct: 1   KNPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLP 60

Query: 206 -------------------------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
                                    A    V  +MT      + D  I DA  +M   K 
Sbjct: 61  SPLELIELPLREFINWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKI 120

Query: 241 LHLPVVDRDGDVVDVV---DVIH 260
             LPVV+ DG +V +V   D+I 
Sbjct: 121 KRLPVVE-DGRLVGIVTRGDIIE 142

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 18 LCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPV 77
          + GI++ +D+     A    L   PV   M+ +   V  DT   E  + MV+     +PV
Sbjct: 36 VVGIISRRDV---EKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPV 92

Query: 78 VENGEVI 84
          VE+G ++
Sbjct: 93 VEDGRLV 99

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239991 cd04619, CBS_pair_6, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 4   RRVDALLLTDSNALLCGILTDKDIATRVIARELNLEET-PVSKVMTRNPTFVLSDTLAVE 62
             +D +++ D +  L G+LT  D+  R + R      T PV  VMTR         L  +
Sbjct: 22  PGIDLVVVCDPHGKLAGVLTKTDV-VRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHD 80

Query: 63  ALQKMVQGKFRHLPVV-ENGEVIALLDI 89
             Q M Q   +++PVV EN   + +L+ 
Sbjct: 81  VWQVMKQRGLKNIPVVDENARPLGVLNA 108

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 137 ERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVT---VENKPRGILTSK 193
           ERM    +   +   S V+T SP D+V  A  +MLE   SS VV     + K  GILT K
Sbjct: 66  ERMLDLPVYDAM--SSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKK 123

Query: 194 DILMR 198
           D+L  
Sbjct: 124 DVLRA 128

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
            VVTI     +      +     ++  VV  + +  GI++  DI   ++      D  + 
Sbjct: 2   DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIR-EILFDPSLYDLVVA 60

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD 251
             +MT  P     +  + DAL    D  +  LPVVD D  
Sbjct: 61  SDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPG 100

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 11/96 (11%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTF-VLSDTL 59
           MA   +  + + D N  L GI+T++D+  R           PVS+VMT+     V   T 
Sbjct: 113 MARYGISGVPVVDENGKLVGIITNRDV--RFETD----LSQPVSEVMTKERLVTVPEGTT 166

Query: 60  AVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAK 91
             EAL+ + + +   LPVV +NG +  L+   DI K
Sbjct: 167 LEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEK 202

Length = 486

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR--GILTSKDILMRVISQNLPADST 209
            K   +     +  A  +M      +  V V++K R  GI+T  D+L   +      D  
Sbjct: 1   MKPSCVVLNTDIARAVAEMYTSGSRALPV-VDDKKRLVGIITRYDVLSYALESEELKD-A 58

Query: 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            V +VM         +  I  A  +M +     LPV+D  G V  +V
Sbjct: 59  KVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 35/150 (23%), Positives = 57/150 (38%), Gaps = 41/150 (27%)

Query: 49  RNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDAIARMERAAEKG 107
           R+   V  D    EAL+ M++     LPVV ++G ++ ++       D +  +       
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTER----DLLRALAE----- 51

Query: 108 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMAT 167
                              G    + T+ + M R            VVT+SP  ++  A 
Sbjct: 52  -------------------GGLDPLVTVGDVMTRD-----------VVTVSPDTSLEEAA 81

Query: 168 KKMLELRLSS-AVVTVENKPRGILTSKDIL 196
           + MLE  +    VV  E +  GI+T  DIL
Sbjct: 82  ELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARE--------LNLEETPVSKVMTRNPT 52
           M   R+  L + + +  L G+LT +D+    ++              + PV++VM  +  
Sbjct: 19  MREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVL 78

Query: 53  FVLSDTLAVEALQKMVQGKFRHLPVVENGE 82
            V  DT   EA + MV+ K   LPVV++  
Sbjct: 79  TVTPDTPLREAAEIMVENKIGCLPVVDDKG 108

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|182814 PRK10892, PRK10892, D-arabinose 5-phosphate isomerase; Provisional

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 13  DSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKF 72
           D N  + GI TD D+  RV    ++L +  ++ VMT     V    LAV+AL  M     
Sbjct: 242 DDNMKIEGIFTDGDL-RRVFDMGIDLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHI 300

Query: 73  RHLPVVENGEVIALL 87
             + V +   ++ +L
Sbjct: 301 TSVLVADGDHLLGVL 315

Length = 326

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 11/89 (12%)

Query: 9   LLLTDSNALLCGILTDKDIATRV---------IARELNLEETPVSKVMTRNPTFVLSDTL 59
           LL+ + N L  G+++D+D    +           ++L        ++MTR+P  V  DT 
Sbjct: 27  LLVVEDNEL-VGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITVSPDTP 85

Query: 60  AVEALQKMVQGKFRHLPVV-ENGEVIALL 87
             EA + +++     LPVV ENG++I ++
Sbjct: 86  VDEASKLLLENSISCLPVVDENGQLIGII 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 17/46 (36%), Positives = 24/46 (52%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
             +VVTISP  ++L A + M E ++    V  E K  GI+T   I 
Sbjct: 58  TREVVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGIITKGTIA 103

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 9/88 (10%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDI-------ATRVIARELNLEETP--VSKVMTRNP 51
           +   R+ AL + D +  L GI+T +D+         R +   L   + P  V  +M+   
Sbjct: 20  LRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPV 79

Query: 52  TFVLSDTLAVEALQKMVQGKFRHLPVVE 79
             V  DT   E +  +  G   H+PVV+
Sbjct: 80  VTVRPDTPIAELVPLLADGGHHHVPVVD 107

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 9/112 (8%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
           VV ++   T     + + E ++S   VV    +  GI+T KD+L          +   + 
Sbjct: 3   VVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN-------PEEEQLA 55

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
            +MT +P   + D  + +A  +M +     +PVVD DG +V +V V  I  A
Sbjct: 56  LLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVRA 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 34.8 bits (81), Expect = 0.003
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL 196
           VVT+SP  T+  A + + E  +    VV  E +  GI+T +DI+
Sbjct: 2   VVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDII 45

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 1  MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
          +   +  + L+ D +  + GI+T  D+  R +  +   E + V +V T     V  D   
Sbjct: 19 LIESKHGSALVVDRDGGVVGIITLPDL-LRALEADEAGEPSAVDEVATPPLLTVHPDEPL 77

Query: 61 VEALQKMVQGKFRHLPVVENG 81
            AL +M     R LPVV+ G
Sbjct: 78 AHALDRMASRGLRQLPVVDRG 98

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 36.3 bits (84), Expect = 0.004
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV--VDVVDVIHITHAAVAT 268
           V+ +MT +      DT + DAL +M +     +PVVD    V  +   D++    A    
Sbjct: 1   VKDIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGGKR 60

Query: 269 EILLDQIMR 277
            + + ++M 
Sbjct: 61  LLPVKEVMT 69

Length = 117

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 35/139 (25%)

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIARMERAAEKGKAIAAAVEGV 117
             A + M+      LPV+E G+++ ++   DIA                  A+ +    V
Sbjct: 13  SHARRLMLDHDISRLPVIEGGKLVGIVTEKDIAD-----------------ALRSFRPLV 55

Query: 118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS 177
                               R+    +S I+     V+TI P  +V      MLE  +  
Sbjct: 56  RD-------------RHQERRIRNLPVSDIM--TRPVITIEPDTSVSDVASLMLENNIGG 100

Query: 178 AVVTVENKPRGILTSKDIL 196
             V  + K  GI+T  DIL
Sbjct: 101 LPVVDDGKLVGIVTRTDIL 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 38/153 (24%)

Query: 49  RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGK 108
           +NP  V  DT  +EAL+ M +   R LPVV+ G+++ ++           R  + A   K
Sbjct: 1   KNPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIV---------TDRDLKLASPSK 51

Query: 109 AIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTI---IPEKSKVVTISPTDTVLM 165
           A                        TL        LS I          +T+SP  +V  
Sbjct: 52  A-----------------------TTLDIWELYYLLSKIKVSDIMTRDPITVSPDASVEE 88

Query: 166 ATKKMLELRLSSAVVTVENKPR--GILTSKDIL 196
           A + MLE ++S   V V+++ R  GI+T  D+ 
Sbjct: 89  AAELMLERKISGLPV-VDDQGRLVGIITESDLF 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 179 VVTVENKPRGILTSKDILMRVISQNL----PADSTLVEKVMTPNPECATIDTPIVDALHI 234
           V+  E K  G ++  DIL ++               V  VM  +      D  I + LH+
Sbjct: 29  VLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDADIEEILHL 88

Query: 235 MHDGKFLHLPVVDRDG 250
           + D  F  LPVVD DG
Sbjct: 89  LIDQPF--LPVVDDDG 102

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	281
COG2524	294	Predicted transcriptional regulator, contains C-te	99.83
COG2524	294	Predicted transcriptional regulator, contains C-te	99.81
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.8
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.8
COG3620	187	Predicted transcriptional regulator with C-termina	99.72
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.72
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.71
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.71
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.7
COG3620	187	Predicted transcriptional regulator with C-termina	99.69
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.69
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.69
COG2905	610	Predicted signal-transduction protein containing c	99.69
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.69
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.68
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.68
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.68
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.67
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.66
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.66
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.66
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.65
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.65
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.65
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.64
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.64
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.64
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.64
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.64
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.64
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.63
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.63
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.63
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.63
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.63
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.63
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.63
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.63
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.63
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.63
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.62
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.62
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.62
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.62
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.62
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.62
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.62
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.61
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.61
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.61
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.61
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.61
COG4109	432	Predicted transcriptional regulator containing CBS	99.61
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.61
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.6
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.6
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.6
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.6
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.59
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.59
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.59
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.59
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.59
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.59
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.58
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.58
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.58
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.58
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.57
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.57
PRK11573	413	hypothetical protein; Provisional	99.57
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.57
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.57
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.56
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.56
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.56
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.56
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.56
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.55
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.55
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.54
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.54
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.54
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.54
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.54
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.53
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.53
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.52
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.52
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.52
COG0517	117	FOG: CBS domain [General function prediction only]	99.51
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.51
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.51
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.5
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.5
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.5
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.5
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.5
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.49
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.49
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.49
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.48
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.48
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.48
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.47
COG2905	610	Predicted signal-transduction protein containing c	99.47
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.47
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.47
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.47
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.46
PRK11573	413	hypothetical protein; Provisional	99.46
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.46
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.46
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.46
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.46
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.46
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.45
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.45
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.45
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.45
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.45
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.45
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.45
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.44
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.44
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.44
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.44
COG4109	432	Predicted transcriptional regulator containing CBS	99.43
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.43
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.43
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.43
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.43
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.43
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.43
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.43
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.43
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.43
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.43
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.43
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.43
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.42
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.42
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.42
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.42
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.41
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.41
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.41
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.4
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.4
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.4
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.4
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.39
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.39
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.39
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	99.38
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.38
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.38
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.38
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.37
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.37
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.37
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.37
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.37
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.37
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.36
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.36
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.35
COG0517	117	FOG: CBS domain [General function prediction only]	99.35
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.33
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.33
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.33
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.33
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.33
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.32
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.32
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.3
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.29
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.29
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.29
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.27
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.19
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.18
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.15
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.12
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.09
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.02
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.01
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.99
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.89
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.74
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.7
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.69
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.68
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.58
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.36
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.36
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	98.22
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.12
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	98.1
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	98.09
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.84
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	97.74
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.65
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.35
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	96.89
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.57
KOG2118	498	consensus Predicted membrane protein, contains two	94.5
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	93.49
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	92.53
KOG2118	498	consensus Predicted membrane protein, contains two	84.39

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.83  E-value=5.9e-20  Score=145.52  Aligned_cols=122  Identities=26%  Similarity=0.347  Sum_probs=110.7

Q ss_pred             cCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCC
Q 023512          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (281)
Q Consensus       140 ~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~  219 (281)
                      .+.++..+|.  +++.++.+++|+.++..+|.++++++.||.|+++++|++|..|+...++....   ..+++++|.+++
T Consensus       170 Pk~~V~~~~s--~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~g~~---~~kV~~~M~k~v  244 (294)
T COG2524         170 PKEKVKNLMS--KKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANGNL---DAKVSDYMRKNV  244 (294)
T ss_pred             Ccchhhhhcc--CCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHcCCc---cccHHHHhccCC
Confidence            4566888998  88999999999999999999999999999998899999999999744444322   458999999999


Q ss_pred             eeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (281)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~  266 (281)
                      +++.+|+.+.+|+++|..++++++.|+|.+|+++|+||++|++....
T Consensus       245 itI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         245 ITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             ceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence            99999999999999999999999999999999999999999998754

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.81  E-value=1.8e-19  Score=142.82  Aligned_cols=126  Identities=21%  Similarity=0.339  Sum_probs=112.0

Q ss_pred             cCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHH
Q 023512           35 ELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (281)
Q Consensus        35 ~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~  114 (281)
                      ..++-+.++.++|+++++++++++|+.+|.++|.+++++.+||+|+++++|+++..|+..++..                
T Consensus       166 m~siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~----------------  229 (294)
T COG2524         166 MVSIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIAN----------------  229 (294)
T ss_pred             eeecCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHc----------------
Confidence            3466688999999999999999999999999999999999999999999999999999765321                


Q ss_pred             hhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHH
Q 023512          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK  193 (281)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~  193 (281)
                                             -.-..+++++|.  ++++++.+++.+.||+++|..+++.++.|+| +|+++|++|++
T Consensus       230 -----------------------g~~~~kV~~~M~--k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrT  284 (294)
T COG2524         230 -----------------------GNLDAKVSDYMR--KNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRT  284 (294)
T ss_pred             -----------------------CCccccHHHHhc--cCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehH
Confidence                                   112346889998  8899999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHh
Q 023512          194 DILMRVIS  201 (281)
Q Consensus       194 di~~~~~~  201 (281)
                      |+++++..
T Consensus       285 DIL~~ia~  292 (294)
T COG2524         285 DILTRIAG  292 (294)
T ss_pred             HHHHHhhc
Confidence            99976643

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.80  E-value=3.3e-18  Score=148.72  Aligned_cols=235  Identities=21%  Similarity=0.229  Sum_probs=172.5

Q ss_pred             CCCCccEEEEEcC-CCcEEEEEehHHHHHHHHHhcC------CCCccccccc------------ccCCC-eEecCCchHH
Q 023512            2 AARRVDALLLTDS-NALLCGILTDKDIATRVIAREL------NLEETPVSKV------------MTRNP-TFVLSDTLAV   61 (281)
Q Consensus         2 ~~~~~~~~~v~~~-~~~~~Gi~t~~d~~~~~~~~~~------~~~~~~v~di------------m~~~~-~~v~~~~~l~   61 (281)
                      ..+++++.|+|+. ...++|+++..|+...+.....      ++...+...+            -..++ +++.|..++.
T Consensus        95 ~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l  174 (381)
T KOG1764|consen   95 VQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLL  174 (381)
T ss_pred             HhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHH
Confidence            3567889999996 4589999999999854432111      1111111111            12244 8999999999


Q ss_pred             HHHHHhHhCCCcEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhh
Q 023512           62 EALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERM  139 (281)
Q Consensus        62 ~a~~~m~~~~~~~~pV~d-~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (281)
                      ++...+.+++++++||.| + +.++.+++.+.+++++..+.....     ....+                         
T Consensus       175 ~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~-----~~~~l-------------------------  224 (381)
T KOG1764|consen  175 DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLP-----LPSLL-------------------------  224 (381)
T ss_pred             HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccc-----cHHHh-------------------------
Confidence            999999999999999998 3 899999999999987655433221     00000                         


Q ss_pred             cCCCccccccC-CCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcccc-ccccc-
Q 023512          140 FRPSLSTIIPE-KSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTL-VEKVM-  215 (281)
Q Consensus       140 ~~~~v~~~m~~-~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~-v~~~~-  215 (281)
                       ..++.+.-.. ..++..+..++++.+|++.|...+++.+||++ .|..+|+++..|+........+...... +.... 
T Consensus       225 -~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~  303 (381)
T KOG1764|consen  225 -SKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALS  303 (381)
T ss_pred             -hCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhHHHHHhh
Confidence             0011111000 04588899999999999999999999999999 7777999999999754444444443333 33322 


Q ss_pred             -----cCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          216 -----TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       216 -----~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                           ....++|.+++++.+++..|..+++++++|||++|.++|+||.+|++.+...
T Consensus       304 ~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~  360 (381)
T KOG1764|consen  304 HRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVL  360 (381)
T ss_pred             hcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHh
Confidence                 2456999999999999999999999999999999999999999999998553

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.80  E-value=1.3e-18  Score=160.29  Aligned_cols=230  Identities=21%  Similarity=0.235  Sum_probs=162.4

Q ss_pred             cccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHH-----HHHHhhhhHHHH
Q 023512           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARME-----RAAEKGKAIAAA  113 (281)
Q Consensus        40 ~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~-----~~~~~~~~~~~~  113 (281)
                      ..+++++|.++++++++++++.+|+++|.+++++.+||+|+ |+++|+++..|+.........     ....+...+...
T Consensus        67 ~~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~~~  146 (546)
T PRK14869         67 KPQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENIIRT  146 (546)
T ss_pred             CCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHHHh
Confidence            46899999999999999999999999999999999999985 999999999999876554332     111122334444


Q ss_pred             HhhHhhhhCCCCCChhhHHHHHH-HhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCC--------
Q 023512          114 VEGVEKHWGTSISGPNTFIETLR-ERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN--------  184 (281)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~--------  184 (281)
                      +++.....+...   ......+. -.+....+...+.+ .+++.+....   ++...+.+.+.++++++.+.        
T Consensus       147 L~~~~l~~~~~~---~~~~~~~~v~a~~~~~~~~~~~~-~~lvi~gdr~---d~~~~ai~~~~~~lIlt~g~~~~~~v~~  219 (546)
T PRK14869        147 LDGEVLVGAEED---KVEEGKVVVAAMAPESLLERIEE-GDIVIVGDRE---DIQLAAIEAGVRLLIITGGAPVSEDVLE  219 (546)
T ss_pred             cCcEEEecCccc---ccccccEEEEEcCHHHHHHhccC-CCEEEEcCcH---HHHHHHHHcCCCEEEECCCCCCCHHHHH
Confidence            433332111110   00000000 00000112223332 3455554443   33445677889999998732        


Q ss_pred             -----eeeEeeeHHHHHHHHHhcCCCCcccccccccc-CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEh
Q 023512          185 -----KPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDV  258 (281)
Q Consensus       185 -----~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~  258 (281)
                           .+.+++|..|.+. ......  ...+++++|+ ++++++++++++.++.+.|.+++.+.+||+|++|+++|+||.
T Consensus       220 la~~~~i~ii~t~~dt~~-t~~~l~--~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~  296 (546)
T PRK14869        220 LAKENGVTVISTPYDTFT-TARLIN--QSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISR  296 (546)
T ss_pred             HHHhCCCeEEEecccHHH-HHHHhh--cCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEH
Confidence                 3679999999974 333222  2468999999 899999999999999999999999999999999999999999


Q ss_pred             hhHHHhhhchHHHHHHHHHHh
Q 023512          259 IHITHAAVATEILLDQIMRQQ  279 (281)
Q Consensus       259 ~di~~~~~~~~~~~~~~~~~~  279 (281)
                      .|+++....++.+++++...+
T Consensus       297 ~dl~~~~~~~~iLVD~~e~~q  317 (546)
T PRK14869        297 YHLLSPVRKKVILVDHNEKSQ  317 (546)
T ss_pred             HHhhccccCceEEEcCccccc
Confidence            999999888888888877655

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.72  E-value=7.2e-17  Score=118.82  Aligned_cols=121  Identities=18%  Similarity=0.299  Sum_probs=103.7

Q ss_pred             CcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHh
Q 023512           39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (281)
Q Consensus        39 ~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (281)
                      ...+...+|+++++++.|++++.+++.+|.+++++.+||+++++++|-|+-.++.+..+..++                 
T Consensus        63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e-----------------  125 (187)
T COG3620          63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGME-----------------  125 (187)
T ss_pred             ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhcccc-----------------
Confidence            466889999999999999999999999999999999999999999999999999887544331                 


Q ss_pred             hhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHH
Q 023512          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  198 (281)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~  198 (281)
                                         .....++.++|.  .++++++++.++..+-+++..+  ..+.|.++|.++|+||+.|++ +
T Consensus       126 -------------------~i~~~~vr~vM~--e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e~G~~vGIITk~DI~-k  181 (187)
T COG3620         126 -------------------SIRSLRVREVMG--EPFPTVSPDESLNVISQLLEEH--PAVLVVENGKVVGIITKADIM-K  181 (187)
T ss_pred             -------------------chhhhhHHHHhc--CCCCcCCCCCCHHHHHHHHhhC--CeEEEEeCCceEEEEeHHHHH-H
Confidence                               122335778886  8999999999999998888765  568888999999999999998 4


Q ss_pred             HH
Q 023512          199 VI  200 (281)
Q Consensus       199 ~~  200 (281)
                      +.
T Consensus       182 ~~  183 (187)
T COG3620         182 LL  183 (187)
T ss_pred             HH
Confidence            43

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.72  E-value=1.2e-16  Score=129.11  Aligned_cols=131  Identities=25%  Similarity=0.286  Sum_probs=114.3

Q ss_pred             hhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHh----cCCCCcccccc
Q 023512          138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS----QNLPADSTLVE  212 (281)
Q Consensus       138 ~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~----~~~~~~~~~v~  212 (281)
                      .+...+..++|.  +++++++.++++.++..+|.+|+++.+||+| +.+++|+||++|+++..-.    ..+......++
T Consensus       241 ~~~~LtcadIMS--rdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk  318 (382)
T COG3448         241 RMGELTCADIMS--RDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVK  318 (382)
T ss_pred             HhccccHHHhcC--ccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCccc
Confidence            456677899998  8999999999999999999999999999999 8899999999999852211    11122345789


Q ss_pred             ccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhchHH
Q 023512          213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATEI  270 (281)
Q Consensus       213 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~~~  270 (281)
                      .+|+....++.++++..+++-.+.+.+.+++||+|+.|+++||||.+|++.+..+...
T Consensus       319 ~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~~  376 (382)
T COG3448         319 GIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNWS  376 (382)
T ss_pred             ccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999776544

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.71  E-value=2.8e-16  Score=114.76  Aligned_cols=111  Identities=29%  Similarity=0.347  Sum_probs=97.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  230 (281)
                      ++.+++++.++.++++.|.+.+.+++||++ + |+++|+++..|+++.+..........++.++|..+++++++++++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   81 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY   81 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence            478899999999999999988999999998 5 89999999999985555543333345788999888999999999999


Q ss_pred             HHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       231 ~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      +++.|.+.+..++||+++ |+++|+|+..|++++
T Consensus        82 ~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~~  114 (114)
T cd04630          82 CARLMERTNIRRAPVVEN-NELIGIISLTDIFLA  114 (114)
T ss_pred             HHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhcC
Confidence            999999999999999986 999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.71  E-value=3.3e-16  Score=114.41  Aligned_cols=110  Identities=23%  Similarity=0.265  Sum_probs=96.0

Q ss_pred             eeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512          154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (281)
Q Consensus       154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (281)
                      +.++++++++.++++.|.+.+..++||++ +|++.|+++..|+++............++.++|..++.++.+++++.+++
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~   82 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDVW   82 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHHH
Confidence            67789999999999999999999999998 88999999999997434321222234578899999999999999999999


Q ss_pred             HHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      +.|.+++..++||+|++|+++|+|+.+|+++
T Consensus        83 ~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          83 QVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             HHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            9999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.70  E-value=8.3e-16  Score=135.96  Aligned_cols=163  Identities=13%  Similarity=0.148  Sum_probs=130.5

Q ss_pred             HHHHhcCCCCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHH
Q 023512           30 RVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAE  105 (281)
Q Consensus        30 ~~~~~~~~~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~  105 (281)
                      .++.+...+.+.+++|+|++  ++++++.++++.++++.+.+++++++||+++  ++++|+++.+|++.+...       
T Consensus       180 ~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-------  252 (408)
T TIGR03520       180 KILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK-------  252 (408)
T ss_pred             HHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-------
Confidence            44556779999999999997  7899999999999999999999999999985  699999999999753100       


Q ss_pred             hhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CC
Q 023512          106 KGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN  184 (281)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~  184 (281)
                                                        ...++.++|   +++.++++++++.++++.|++++.+.++|+| .|
T Consensus       253 ----------------------------------~~~~l~~~~---~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G  295 (408)
T TIGR03520       253 ----------------------------------KNFDWQSLL---REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYG  295 (408)
T ss_pred             ----------------------------------CCCCHHHHc---CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCC
Confidence                                              001133344   4588999999999999999999999999999 79


Q ss_pred             eeeEeeeHHHHHHHHHhcCCCCccccccccc---cCCCeeeeCCCCHHHHHHHhHh
Q 023512          185 KPRGILTSKDILMRVISQNLPADSTLVEKVM---TPNPECATIDTPIVDALHIMHD  237 (281)
Q Consensus       185 ~~~Givt~~di~~~~~~~~~~~~~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~  237 (281)
                      ...|+||.+|+++.++++..+..+ .-.+.+   ....+.++...++.++.+.|.-
T Consensus       296 ~~~GiVT~eDileeivgei~de~d-~~~~~i~~~~~~~~~v~G~~~l~~l~~~l~~  350 (408)
T TIGR03520       296 GTSGLVTLEDIIEEIVGDISDEFD-DEDLIYSKIDDNNYVFEGKTSLKDFYKILKL  350 (408)
T ss_pred             CEEEEEEHHHHHHHHhCCCCCcCC-cCccceEEeCCCeEEEEeccCHHHHHHHhCC
Confidence            999999999999888776544322 112212   2456889999999999998844

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.69  E-value=2.1e-16  Score=116.43  Aligned_cols=121  Identities=24%  Similarity=0.283  Sum_probs=107.6

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCe
Q 023512          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  220 (281)
Q Consensus       141 ~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~  220 (281)
                      ..+...+|+  .|++.+.+++++.+++++|..+|++.+||+++|+++|-||..++.+..+....+.....+.++|...++
T Consensus        64 ~ita~~iM~--spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP  141 (187)
T COG3620          64 RITAKTIMH--SPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFP  141 (187)
T ss_pred             eEeHhhhcc--CCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCC
Confidence            345678887  899999999999999999999999999999999999999999998666665555667789999999999


Q ss_pred             eeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (281)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~  266 (281)
                      +++++.+++.+..++..++  ++.|+ ++|+++|+||+.|+++...
T Consensus       142 ~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGIITk~DI~k~~~  184 (187)
T COG3620         142 TVSPDESLNVISQLLEEHP--AVLVV-ENGKVVGIITKADIMKLLA  184 (187)
T ss_pred             cCCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEEEeHHHHHHHHh
Confidence            9999999999999998876  57777 5899999999999998754

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.69  E-value=3.7e-16  Score=111.01  Aligned_cols=94  Identities=21%  Similarity=0.243  Sum_probs=84.9

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  230 (281)
                      .+.++++++++.++.+.|.+++.+++||++ + |+++|++|..|+.+.+.                  +.++.+++++.+
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------~~~v~~~~~l~~   63 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------LVSIHPERSLFD   63 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------eEEeCCCCcHHH
Confidence            478899999999999999999999999998 4 79999999999963111                  778999999999


Q ss_pred             HHHHhHhCCCCeeeEecCC-CcEEEEEEhhhHHHh
Q 023512          231 ALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHA  264 (281)
Q Consensus       231 ~~~~~~~~~~~~l~Vv~~~-~~~~Gvis~~di~~~  264 (281)
                      |++.|.+++.+++||+|++ |+++|+||.+|++++
T Consensus        64 a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~~   98 (98)
T cd04618          64 AALLLLKNKIHRLPVIDPSTGTGLYILTSRRILKF   98 (98)
T ss_pred             HHHHHHHCCCCEeeEEECCCCCceEEeehhhhhcC
Confidence            9999999999999999987 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.69  E-value=1.2e-15  Score=128.97  Aligned_cols=173  Identities=13%  Similarity=0.134  Sum_probs=131.9

Q ss_pred             EEEehHHHHHHHHHhcCCCCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHH
Q 023512           20 GILTDKDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYD   95 (281)
Q Consensus        20 Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~   95 (281)
                      |.++..+  +.++.+...+.+.+|+++|++  ++.++++++++.++++.+.+++++++||+++  ++++|+++.+|++..
T Consensus        48 g~l~~~e--~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~  125 (292)
T PRK15094         48 DLIDEDT--RDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPF  125 (292)
T ss_pred             CCCCHHH--HHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhH
Confidence            4444443  244556678999999999997  6899999999999999999999999999984  789999999999753


Q ss_pred             HHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCc
Q 023512           96 AIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRL  175 (281)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~  175 (281)
                      ....                                       .....+.++|   .++.++++++++.++++.|++++.
T Consensus       126 ~~~~---------------------------------------~~~~~l~~l~---r~~~~V~e~~~l~~~L~~m~~~~~  163 (292)
T PRK15094        126 MRSD---------------------------------------AEAFSMDKVL---RQAVVVPESKRVDRMLKEFRSQRY  163 (292)
T ss_pred             hhcc---------------------------------------CCcCCHHHHc---CCCcCcCCCCcHHHHHHHHHhcCC
Confidence            1000                                       0001234455   345689999999999999999999


Q ss_pred             cEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccc-cccc--cCCCeeeeCCCCHHHHHHHhH
Q 023512          176 SSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLV-EKVM--TPNPECATIDTPIVDALHIMH  236 (281)
Q Consensus       176 ~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v-~~~~--~~~~~~v~~~~~l~~~~~~~~  236 (281)
                      +.+||+| .|.++|+||.+|++..+.+...+..+..- .++.  ....+.++...++.++.+.+-
T Consensus       164 ~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~dl~~~l~  228 (292)
T PRK15094        164 HMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAFG  228 (292)
T ss_pred             EEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccCHHHHHHHhC
Confidence            9999999 78899999999999878765443322111 1122  345688999999999988873

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.69  E-value=8.2e-16  Score=134.71  Aligned_cols=135  Identities=26%  Similarity=0.351  Sum_probs=118.2

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCC
Q 023512          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (281)
Q Consensus       141 ~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~  219 (281)
                      ..++.++++  .+++++++.+++.+|...|..+|.+.+++++ ++...||||.+|+..+.+.++.+. ..+++++|+.++
T Consensus       148 ~trv~~~~~--~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~p~  224 (610)
T COG2905         148 LTRVGEVKT--LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTSPV  224 (610)
T ss_pred             HHHHHHHhc--CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhccCc
Confidence            344666666  7899999999999999999999999888888 999999999999998888776554 559999999999


Q ss_pred             eeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh-chHHHHHHHHHHh
Q 023512          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV-ATEILLDQIMRQQ  279 (281)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~-~~~~~~~~~~~~~  279 (281)
                      ++++.++.+.+|+-.|.+++++++||.+ +|+++|++|.+||++... +...++.++.++.
T Consensus       225 ~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~~~~vl~~~i~~a~  284 (610)
T COG2905         225 ISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQNSIVLVKRIARAS  284 (610)
T ss_pred             eeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCCCceeehHHhhhhh
Confidence            9999999999999999999999999986 899999999999999976 6666666655543

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.69  E-value=9.3e-16  Score=113.07  Aligned_cols=112  Identities=13%  Similarity=0.156  Sum_probs=91.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcccccc------ccccCCCeeeeCC
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVE------KVMTPNPECATID  225 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~------~~~~~~~~~v~~~  225 (281)
                      ++.+++++.++.++.+.|.+++.+++||++ +|+++|+++.+|++.............++.      +.|..++.++.++
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   81 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSPD   81 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcCC
Confidence            578899999999999999999999999998 889999999999974332222111111222      2334567899999


Q ss_pred             CCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          226 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       226 ~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      +++.++++.|.+++.+++||+|++|+++|+||..|++++
T Consensus        82 ~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~~  120 (120)
T cd04641          82 DCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQF  120 (120)
T ss_pred             CcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhcC
Confidence            999999999999999999999988999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.68  E-value=3.3e-16  Score=126.72  Aligned_cols=130  Identities=20%  Similarity=0.320  Sum_probs=111.7

Q ss_pred             CCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 023512           38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (281)
Q Consensus        38 ~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (281)
                      ..+.+-.|+|++.++++.+++++.+|.++|.+++++.+||+|+ .+++|++++.|+++...                   
T Consensus       242 ~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~-------------------  302 (382)
T COG3448         242 MGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHAR-------------------  302 (382)
T ss_pred             hccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccC-------------------
Confidence            3467889999999999999999999999999999999999997 89999999999976310                   


Q ss_pred             HhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHH
Q 023512          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (281)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di  195 (281)
                                  -.+...++ .+...+++.+|+  +++.++.++++..+++-.+.+.+.+++||+| +|+++||||+.|+
T Consensus       303 ------------~~p~qrlr-~~~~~~vk~imt--~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDl  367 (382)
T COG3448         303 ------------PSPFQRLR-FLRPPTVKGIMT--TPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDL  367 (382)
T ss_pred             ------------cchHHHhh-ccCCCccccccc--CcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHH
Confidence                        01122222 456778999998  7899999999999999999999999999999 9999999999999


Q ss_pred             HHHHHh
Q 023512          196 LMRVIS  201 (281)
Q Consensus       196 ~~~~~~  201 (281)
                      +..++.
T Consensus       368 iaal~r  373 (382)
T COG3448         368 IAALYR  373 (382)
T ss_pred             HHHHHH
Confidence            865554

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.68  E-value=1.2e-15  Score=111.03  Aligned_cols=112  Identities=58%  Similarity=0.840  Sum_probs=97.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (281)
                      ++.++.++.++.++++.|.+.+.++++|+++|+++|+++..|++..+..........++.++|...+.++++++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~~   81 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEAL   81 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHHH
Confidence            46789999999999999988888999999889999999999997555544333322578899988899999999999999


Q ss_pred             HHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      +.|.+++..++||++++|+++|+||..|++.+
T Consensus        82 ~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~~  113 (113)
T cd04587          82 HLMVQGKFRHLPVVDKSGQVVGLLDVTKLTHA  113 (113)
T ss_pred             HHHHHcCCCcccEECCCCCEEEEEEHHHhccC
Confidence            99999999999999988999999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.68  E-value=1.2e-15  Score=110.97  Aligned_cols=107  Identities=23%  Similarity=0.266  Sum_probs=93.6

Q ss_pred             eeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512          154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (281)
Q Consensus       154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (281)
                      +.+++++.++.++++.|.+.+.+.++|++ +|+++|+++..|+. .....  .....++.++|...+.++.+++++.+++
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~--~~~~~~v~~~~~~~~~~v~~~~~l~~al   79 (111)
T cd04603           3 TVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLL-EIGPN--DYETLKVCEVYIVPVPIVYCDSKVTDLL   79 (111)
T ss_pred             eEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHH-hhccc--cccccChhheeecCCcEECCCCcHHHHH
Confidence            67889999999999999988899999998 78999999999996 33211  1113468899988889999999999999


Q ss_pred             HHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      +.|.+++.+++||+|++|+++|+||.+|+++
T Consensus        80 ~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          80 RIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             HHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            9999999999999998899999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.67  E-value=1.5e-15  Score=110.96  Aligned_cols=111  Identities=27%  Similarity=0.368  Sum_probs=96.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (281)
                      ++.++.++.++.++.+.|.+.+.+++||++ +|+++|+++..|++.... ........++.++|...+.++.+++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~   80 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE-ADEAGEPSAVDEVATPPLLTVHPDEPLAHA   80 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHh-cccccccccHHHhccCCceEECCCCCHHHH
Confidence            467889999999999999988999999999 799999999999974343 332222345888888899999999999999


Q ss_pred             HHHhHhCCCCeeeEecCC--CcEEEEEEhhhHHHh
Q 023512          232 LHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITHA  264 (281)
Q Consensus       232 ~~~~~~~~~~~l~Vv~~~--~~~~Gvis~~di~~~  264 (281)
                      ++.|.+++.+++||+|++  |+++|+||.+|++++
T Consensus        81 l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~  115 (115)
T cd04593          81 LDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             HHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence            999999999999999977  799999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.66  E-value=1.8e-15  Score=112.03  Aligned_cols=112  Identities=27%  Similarity=0.401  Sum_probs=97.3

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCC----------CccccccccccCCCe
Q 023512          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPE  220 (281)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~----------~~~~~v~~~~~~~~~  220 (281)
                      +++.+++++.++.++.+.|.+.+++++||++ +|+++|+++..|++. .......          ....++.++|.+.+.
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   80 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLR-HARPDGRRPLRGRLRGRDKPETVGDIMSPPVV   80 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHh-hhcccccchhhhhhhcccccccHHHhccCCCe
Confidence            5688899999999999999988999999998 699999999999974 3332221          224468889989999


Q ss_pred             eeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      ++++++++.++++.|.+.+.+++||++++|+++|+||..|++++
T Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~~  124 (124)
T cd04600          81 TVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA  124 (124)
T ss_pred             eeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence            99999999999999999999999999988999999999999864

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=3.6e-15  Score=108.52  Aligned_cols=112  Identities=33%  Similarity=0.481  Sum_probs=97.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (281)
                      ++.++.+++++.++++.|.+.+.+++||+++|++.|+++..|++.+.+.........++.++|...+.++.+++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEAA   81 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHHH
Confidence            46789999999999999998899999999989999999999996455544333333348899988999999999999999


Q ss_pred             HHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      +.|.+.+.+++||++++|+++|+++..|++++
T Consensus        82 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~~  113 (113)
T cd04622          82 RLMREHQVRRLPVVDDDGRLVGIVSLGDLARA  113 (113)
T ss_pred             HHHHHcCCCeeeEECCCCcEEEEEEHHHhhcC
Confidence            99999999999999977999999999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=2.2e-15  Score=110.70  Aligned_cols=110  Identities=21%  Similarity=0.259  Sum_probs=94.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccC--CCeeeeCCCCHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIV  229 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~  229 (281)
                      ++.+++++.++.++++.|..++..++||++ +|+++|+++..|+++..... ......++.++|..  .+.++++++++.
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~l~   80 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGG-ADLQKVPVGVIMTRMPNITTTTPEESVL   80 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcC-CCccCCCHHHHhCCCCCcEEECCCCcHH
Confidence            478899999999999999988999999998 68999999999997555432 22224467788874  688999999999


Q ss_pred             HHHHHhHhCCCCeeeEecCC---CcEEEEEEhhhHHH
Q 023512          230 DALHIMHDGKFLHLPVVDRD---GDVVDVVDVIHITH  263 (281)
Q Consensus       230 ~~~~~~~~~~~~~l~Vv~~~---~~~~Gvis~~di~~  263 (281)
                      ++++.|.+++.+++||+|++   |+++|+||.+|+++
T Consensus        81 ~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          81 EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            99999999999999999976   69999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=3.5e-15  Score=108.44  Aligned_cols=111  Identities=33%  Similarity=0.482  Sum_probs=95.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (281)
                      ++.+++++.++.++++.|.+.+++++||++ +++++|+++..|+++.+..........++.++|...+.++++++++.++
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   81 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEA   81 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHH
Confidence            467789999999999999988999999998 6899999999999754443322222447888998889999999999999


Q ss_pred             HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      ++.|.+.+.+++||+++ |+++|+||..|++++
T Consensus        82 l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~~  113 (113)
T cd04623          82 MALMTERRFRHLPVVDG-GKLVGIVSIGDVVKA  113 (113)
T ss_pred             HHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhcC
Confidence            99999999999999986 999999999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.65  E-value=1.4e-15  Score=131.61  Aligned_cols=124  Identities=22%  Similarity=0.278  Sum_probs=106.5

Q ss_pred             cCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCC
Q 023512          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  218 (281)
Q Consensus       140 ~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~  218 (281)
                      ...++.++|...+++.++++++++.++++.|.+.+...+||++ +|+++|+||.+|+. +...........++.++|.++
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~-~~~~~~~~~~~~~v~~im~~~  278 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLR-RVFDMGIDLRQASIADVMTPG  278 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHH-HHHhcCCCcccCCHHHhcCCC
Confidence            4456889997323899999999999999999988888888888 89999999999996 555443233345799999999


Q ss_pred             CeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhh
Q 023512          219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (281)
Q Consensus       219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~  265 (281)
                      +.++.+++++.++++.|.+++.+++||++ +|+++|+||..|++++.
T Consensus       279 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~~  324 (326)
T PRK10892        279 GIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRAG  324 (326)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhcc
Confidence            99999999999999999999999999997 68999999999999863

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=3.9e-15  Score=108.78  Aligned_cols=111  Identities=23%  Similarity=0.323  Sum_probs=93.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcC-ccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCC--CCHH
Q 023512          153 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATID--TPIV  229 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~-~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~--~~l~  229 (281)
                      ++.+++++.++.++++.|...+ ...++|.++|+++|+++..|+++ ...........++.++|...+.++.++  +++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~-~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~   80 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVR-LTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF   80 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHH-HHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence            3667899999999999998877 67788888889999999999974 443322222347888998888888887  7899


Q ss_pred             HHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          230 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       230 ~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      ++++.|.+++...+||+|++|+++|+||..|++++
T Consensus        81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~~  115 (115)
T cd04620          81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQV  115 (115)
T ss_pred             HHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhcC
Confidence            99999999999999999988999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=5.9e-15  Score=107.23  Aligned_cols=111  Identities=26%  Similarity=0.394  Sum_probs=94.1

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (281)
                      .+.+++++.++.++++.|.+.+..+++|.++|+++|+++..|+++............++.++|...+.++++++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~   81 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEVR   81 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHHH
Confidence            36778999999999999988788888888889999999999997544432222223478899988889999999999999


Q ss_pred             HHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      +.|.+++..++||++ +|+++|++|..|++++
T Consensus        82 ~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~~  112 (112)
T cd04625          82 RLMVERHLRYLPVLD-GGTLLGVISFHDVAKA  112 (112)
T ss_pred             HHHHHcCCCeeeEEE-CCEEEEEEEHHHhhcC
Confidence            999999999999998 6999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.64  E-value=1.5e-15  Score=112.79  Aligned_cols=112  Identities=17%  Similarity=0.128  Sum_probs=96.4

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHH
Q 023512          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (281)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  230 (281)
                      +++.+++++.++.++++.|.+++.+.+||++ +|+++|+++.+|++..+...... ...++.++|.+++.++.+++++.+
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~-~~~~v~~im~~~~~~v~~~~~~~~   80 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQ-PSDPVSKALYKQFKRVNKNDTLGK   80 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccC-CCCcHHHHhhccceecCCCCCHHH
Confidence            5688899999999999999999999999998 78999999999998555544333 345899999999999999999999


Q ss_pred             HHHHhH---------hCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          231 ALHIMH---------DGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       231 ~~~~~~---------~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      +.+++.         +.+.+.+||++++|+++|+||.+|++++
T Consensus        81 v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          81 LSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             HHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence            999653         3357788899988999999999999976

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.64  E-value=4.7e-15  Score=132.51  Aligned_cols=156  Identities=24%  Similarity=0.306  Sum_probs=124.9

Q ss_pred             HHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEE
Q 023512           99 RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA  178 (281)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~  178 (281)
                      .|+..++...+++.+..|     |....+.+...+...+.+...++.++|.  +++.++.+++++.++++.|.+.+.+++
T Consensus        50 ~mdtvTe~~MAi~~A~~G-----GigvIh~n~~i~~qae~v~~VKv~eim~--~~pvtv~p~~tI~eA~~lm~~~~~~~~  122 (475)
T TIGR01303        50 NMTAVAGRRMAETVARRG-----GIVILPQDLPIPAVKQTVAFVKSRDLVL--DTPITLAPHDTVSDAMALIHKRAHGAA  122 (475)
T ss_pred             cchhhHHHHHHHHHHHCC-----CEEEEeCCCCHHHHHHHHhhcchhhccc--cCCeEECCCCCHHHHHHHHHhcCCeEE
Confidence            355556666666666555     3333333434444455555666778887  778999999999999999999999999


Q ss_pred             EEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEh
Q 023512          179 VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDV  258 (281)
Q Consensus       179 ~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~  258 (281)
                      ||+++++++|+||.+|+. ..     . ...+++++|+++++++++++++.++++.|.+++.+.+||+|++|+++|+||.
T Consensus       123 vVvD~gklvGIVT~rDL~-~~-----~-~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~  195 (475)
T TIGR01303       123 VVILEDRPVGLVTDSDLL-GV-----D-RFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTR  195 (475)
T ss_pred             EEEECCEEEEEEEHHHhh-cC-----C-CCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEH
Confidence            999988999999999994 11     1 1347999999999999999999999999999999999999988999999999


Q ss_pred             hhHHHhhhch
Q 023512          259 IHITHAAVAT  268 (281)
Q Consensus       259 ~di~~~~~~~  268 (281)
                      +||+++..++
T Consensus       196 ~DLl~~~~~~  205 (475)
T TIGR01303       196 TGALRATIYT  205 (475)
T ss_pred             HHHHHHHhCC
Confidence            9999986655

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.64  E-value=9.1e-15  Score=105.96  Aligned_cols=109  Identities=30%  Similarity=0.461  Sum_probs=95.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (281)
                      ++.+++++.++.++++.|.+.+.+.+||.++++++|+++.+|+++ ....... ...++.++|.+++.++++++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~-~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~l   79 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILR-LLASGPD-LQTPVGEVMSSPLLTVPADTSLYDAR   79 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHH-HHhcCCC-CCcCHHHhcCCCceEECCCCCHHHHH
Confidence            467899999999999999988899999999899999999999974 4333222 34578899988999999999999999


Q ss_pred             HHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      +.|.+.+.+++||+|++|+++|+|+..|+++
T Consensus        80 ~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          80 QLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             HHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            9999999999999998899999999999975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=4.2e-15  Score=108.69  Aligned_cols=110  Identities=26%  Similarity=0.275  Sum_probs=92.9

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCc----cccccccccCCCeeeeCCCC
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPAD----STLVEKVMTPNPECATIDTP  227 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~----~~~v~~~~~~~~~~v~~~~~  227 (281)
                      ++.++++++++.++++.|.+.+.+++||++ +|+++|+++..|+++..........    ..++.++|.+.+.++.++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~   81 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDAD   81 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCCCC
Confidence            477899999999999999998999999999 7899999999999754432211111    34688899889999999999


Q ss_pred             HHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          228 IVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       228 l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      +.++++.|.+.+  .+||++++|+++|++|..|++++
T Consensus        82 l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~~  116 (116)
T cd04643          82 IEEILHLLIDQP--FLPVVDDDGIFIGIITRREILKA  116 (116)
T ss_pred             HHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhcC
Confidence            999999998865  59999988999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=5.4e-15  Score=107.61  Aligned_cols=109  Identities=20%  Similarity=0.230  Sum_probs=95.1

Q ss_pred             eeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512          154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (281)
Q Consensus       154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (281)
                      +..+.+++++.++++.|.+.+.+++||++ +|+++|+++..|+++..... ......++.++|..++.++++++++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~-~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   81 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES-EELKDAKVREVMNSPVITIDANDSIAKAR   81 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh-hhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence            67789999999999999998999999998 78999999999997444432 22234578889988899999999999999


Q ss_pred             HHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      +.|.+++...+||++++|+++|+++..|+++
T Consensus        82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          82 WLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             HHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            9999999999999998899999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.63  E-value=1.4e-15  Score=136.32  Aligned_cols=188  Identities=18%  Similarity=0.169  Sum_probs=147.0

Q ss_pred             EEEehHHHHHHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHh-----CCCcEeeEeeC-CeEEEEEehHHHH
Q 023512           20 GILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQ-----GKFRHLPVVEN-GEVIALLDIAKCL   93 (281)
Q Consensus        20 Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~-----~~~~~~pV~d~-~~~vGvi~~~dll   93 (281)
                      +.++..+  +....+-..+.+.+++++|++++.++++++|+.+|++.|.+     ++...+||+|+ ++++|+++.+|++
T Consensus       112 ~~l~~~e--r~~i~~ll~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl  189 (449)
T TIGR00400       112 ASSTEEE--RKAINLLLSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLI  189 (449)
T ss_pred             HcCCHHH--HHHHHHHhCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHh
Confidence            3444443  23344455788899999999999999999999999999975     45667888875 8999999999986


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHc
Q 023512           94 YDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL  173 (281)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~  173 (281)
                      ..                                           ....++.++|.  +++.++++++++.++++.|.++
T Consensus       190 ~a-------------------------------------------~~~~~v~~im~--~~~~~v~~~~~~~eal~~m~~~  224 (449)
T TIGR00400       190 LA-------------------------------------------KPEEILSSIMR--SSVFSIVGVNDQEEVARLIQKY  224 (449)
T ss_pred             cC-------------------------------------------CCCCcHHHHhC--CCCeeECCCCCHHHHHHHHHHc
Confidence            31                                           01124666776  6688899999999999999999


Q ss_pred             CccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcE
Q 023512          174 RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV  252 (281)
Q Consensus       174 ~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~  252 (281)
                      +...+||+| +|+++|+||.+|++..+..+       ..+++|.....+..+++.+..+...+.+++..+++|.    .+
T Consensus       225 ~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~-------~~ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~  293 (449)
T TIGR00400       225 DFLAVPVVDNEGRLVGIVTVDDIIDVIQSE-------ATEDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----LV  293 (449)
T ss_pred             CCCEEeEEcCCCeEEEEEEHHHHHHHHHhh-------hHHHHHHhcCCCCCcchhhhchHHHHHHhccchHHHH----HH
Confidence            999999999 89999999999998544432       2367777666555567888999999999999999886    36


Q ss_pred             EEEEEhhhHHHhhh
Q 023512          253 VDVVDVIHITHAAV  266 (281)
Q Consensus       253 ~Gvis~~di~~~~~  266 (281)
                      .|+++ ..++..+.
T Consensus       294 ~~~~t-~~ii~~f~  306 (449)
T TIGR00400       294 SSTFT-ATIISNYE  306 (449)
T ss_pred             HHHHH-HHHHHHHH
Confidence            67777 66666543

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.63  E-value=5.4e-15  Score=132.27  Aligned_cols=127  Identities=26%  Similarity=0.288  Sum_probs=110.8

Q ss_pred             HHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccc
Q 023512          133 ETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLV  211 (281)
Q Consensus       133 ~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v  211 (281)
                      +...+.+...++.++|.  .++.++++++++.++++.|.+++++++||+| +++++|+||.+|+. ..     .. ..++
T Consensus        80 ~~q~~~l~~VKv~~iMi--~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~-~~-----~~-~~~V  150 (479)
T PRK07807         80 DVVAEVVAWVKSRDLVF--DTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCA-GV-----DR-FTQV  150 (479)
T ss_pred             HHHHHHHhhcccccccc--cCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHh-cC-----cc-CCCH
Confidence            34444555666788887  8899999999999999999999999999998 88999999999994 21     11 2479


Q ss_pred             cccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       212 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      .++|++++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+||+++...+
T Consensus       151 ~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~  207 (479)
T PRK07807        151 RDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT  207 (479)
T ss_pred             HHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence            999999999999999999999999999999999999889999999999999986655

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=6.9e-15  Score=108.88  Aligned_cols=110  Identities=20%  Similarity=0.301  Sum_probs=90.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHHHHHHhcCCC--C------ccccccccccCCCeee
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLP--A------DSTLVEKVMTPNPECA  222 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~~~~~~~~~~--~------~~~~v~~~~~~~~~~v  222 (281)
                      ++.++++++++.++++.|.+.+++++||++ + |+++|+++..|+++.+......  .      ......+++..++.++
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   81 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISI   81 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEe
Confidence            477899999999999999988899999999 5 8999999999997543322110  0      0011224677888999


Q ss_pred             eCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHH
Q 023512          223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT  262 (281)
Q Consensus       223 ~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~  262 (281)
                      ++++++.+|++.|.+++.+++||+|++|+++|+||..|+-
T Consensus        82 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          82 NGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             CCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence            9999999999999999999999999889999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.63  E-value=6.8e-15  Score=107.10  Aligned_cols=111  Identities=22%  Similarity=0.291  Sum_probs=96.7

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (281)
                      ++.++++++++.++++.|.+.+..++||++ +|++.|+++..|++ +...........++.++|.+.+.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~   80 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIR-EILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDA   80 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHH-HHHhcccccccEEHHHhccCCCcEEcCCCCHHHH
Confidence            477899999999999999988999999999 78999999999997 4444333222357889999999999999999999


Q ss_pred             HHHhHhCCCCeeeEecC-CCcEEEEEEhhhHHHh
Q 023512          232 LHIMHDGKFLHLPVVDR-DGDVVDVVDVIHITHA  264 (281)
Q Consensus       232 ~~~~~~~~~~~l~Vv~~-~~~~~Gvis~~di~~~  264 (281)
                      ++.|.+.+.+++||+++ .|+++|+++..|++.+
T Consensus        81 ~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~~  114 (114)
T cd04613          81 LKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLSA  114 (114)
T ss_pred             HHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhcC
Confidence            99999999999999987 7999999999999753

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.63  E-value=4e-15  Score=128.46  Aligned_cols=123  Identities=19%  Similarity=0.274  Sum_probs=105.6

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCC
Q 023512          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (281)
Q Consensus       141 ~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~  219 (281)
                      ..++.++|....++.+++++.++.++.+.|...+...+||+| +|+++|+|+..|+. +.+...... ..++.++|.+++
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~-~~~~~~~~~-~~~v~~im~~~~  273 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLR-RWLVGGGAL-TTPVNEAMTRGG  273 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHH-HHHhCCCCc-CCcHHHhcCCCC
Confidence            346888897322399999999999999999888889999999 88999999999996 444332222 346899999999


Q ss_pred             eeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhh
Q 023512          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (281)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~  265 (281)
                      .++.+++++.++++.|.+++..++||+|++|+++|+||..|++++.
T Consensus       274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~~  319 (321)
T PRK11543        274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQAG  319 (321)
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhcc
Confidence            9999999999999999999999999999889999999999999874

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=7e-15  Score=109.02  Aligned_cols=111  Identities=32%  Similarity=0.379  Sum_probs=95.1

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHHHHHHhcCCCC-----------ccccccccccCCC
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA-----------DSTLVEKVMTPNP  219 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~~~~~~~~~~~-----------~~~~v~~~~~~~~  219 (281)
                      ++.+++++.++.++++.|.+.+..++||++ + |++.|+++..|++. .+......           ...++.+++.+.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILK-YLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV   80 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHH-HhhccchhccccccccchhhhcCHHHHhcCCc
Confidence            467889999999999999988999999998 5 89999999999974 43322111           1346788888889


Q ss_pred             eeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      +++++++++.++++.|.+.+.+++||++++|+++|+||..|++++
T Consensus        81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~  125 (125)
T cd04631          81 ITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA  125 (125)
T ss_pred             eEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence            999999999999999999999999999977999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=6.9e-15  Score=108.55  Aligned_cols=112  Identities=31%  Similarity=0.386  Sum_probs=95.9

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCC--------CccccccccccCCCeeee
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP--------ADSTLVEKVMTPNPECAT  223 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~--------~~~~~v~~~~~~~~~~v~  223 (281)
                      ++.++.+++++.++.+.|.+.+++++||++ +|+++|+++..++++........        ....++.+++..++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~   81 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTVT   81 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeEeC
Confidence            477899999999999999999999999999 69999999999997433322111        124578889988999999


Q ss_pred             CCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       224 ~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      +++++.++++.|.+.+.+++||++++|+++|++|..|++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~~  122 (122)
T cd04803          82 PDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLRL  122 (122)
T ss_pred             CCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhcC
Confidence            99999999999999999999999977999999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=1.4e-14  Score=105.27  Aligned_cols=110  Identities=30%  Similarity=0.459  Sum_probs=94.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (281)
                      ++.+++++.++.++++.|.+.+.+.+||+++++++|+++..|+++.+..........++.+++.+.+.++.+++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   81 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEAA   81 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHHH
Confidence            36778999999999999998889999999977999999999998555443322234578889988899999999999999


Q ss_pred             HHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      +.|.+++.+++||++++ +++|+|+..|+++
T Consensus        82 ~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          82 KLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             HHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence            99999999999999864 9999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.63  E-value=7.9e-15  Score=106.80  Aligned_cols=111  Identities=28%  Similarity=0.390  Sum_probs=96.7

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHH
Q 023512          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (281)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  230 (281)
                      .++.+++++.++.++++.|.+.+.+++||++ +|+++|+++..+++ +++.........++.++|.+.+.++++++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~   80 (114)
T cd04604           2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLR-RALEKGLDILTLPVADVMTRNPKTIDPDALAAE   80 (114)
T ss_pred             CcccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHH-HHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence            4577899999999999999888889999998 78999999999997 454433333334788999888999999999999


Q ss_pred             HHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       231 ~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      +++.|.+++..++||++++|+++|+|+..||++
T Consensus        81 ~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          81 ALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             HHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            999999999999999998899999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.63  E-value=1.1e-14  Score=106.09  Aligned_cols=109  Identities=26%  Similarity=0.403  Sum_probs=95.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (281)
                      .+.+++++.++.++++.|.+.+..+++|++ +|+++|+++..|+++.+. ..... ..++.++|...+.++++++++.++
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~-~~~~~-~~~v~~~~~~~~~~v~~~~~l~~~   80 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALL-KGLSL-DDPVSEVMNRNPITAKVGSSREEI   80 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHh-cCCCc-CCCHHHhhcCCCEEEcCCCCHHHH
Confidence            367789999999999999988999999998 789999999999974443 32222 346889998889999999999999


Q ss_pred             HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      ++.|.+++.+++||++++|+++|+||.+|++.
T Consensus        81 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          81 LALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             HHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence            99999999999999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=8.2e-15  Score=110.42  Aligned_cols=111  Identities=23%  Similarity=0.395  Sum_probs=94.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCC----------------------ccc
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA----------------------DST  209 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~----------------------~~~  209 (281)
                      ++.++++++++.++++.|.+.+.+.+||+| +|+++|+++..|+++.........                      ...
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL   81 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence            467799999999999999988999999999 799999999999985443221110                      134


Q ss_pred             cccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       210 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      ++.++|.+++..+.+++++.++++.|.+.+.+++||+++ |+++|+||..|++++
T Consensus        82 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~~  135 (135)
T cd04621          82 VAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICRE  135 (135)
T ss_pred             cHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhhC
Confidence            788999888999999999999999999999999999985 999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=9.7e-15  Score=108.60  Aligned_cols=110  Identities=22%  Similarity=0.200  Sum_probs=91.1

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcc-------------ccccccccCC
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS-------------TLVEKVMTPN  218 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~-------------~~v~~~~~~~  218 (281)
                      ++.++++++++.++++.|.+++.+++||++ +|+++|+++..|+++ ..........             ....+.+..+
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKG-LLLSPDDLLLYRTITFKELSEKFTDSDGVKSRP   80 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhh-hhcCcchhhcccchhhhhhhhhcccccccccCC
Confidence            477899999999999999988999999998 789999999999974 3322211111             0122456677


Q ss_pred             CeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      +.++++++++.++++.|.+++.+++||+|++|+++|+||..|+++
T Consensus        81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          81 LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            899999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=1.1e-14  Score=105.66  Aligned_cols=108  Identities=23%  Similarity=0.318  Sum_probs=94.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (281)
                      ++.++.++.++.++++.|.+.+...+||++ +|+++|+++..++++.+....   ...++.++|..++.++++++++.++
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~---~~~~v~~~~~~~~~~i~~~~~~~~~   78 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGG---PDAPVRGVMRRDFPTVSPSATLDAV   78 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcC---CCCcHHHHhcCCCcEECCCCcHHHH
Confidence            467789999999999999888889999999 689999999999974443222   1347888998899999999999999


Q ss_pred             HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      ++.|.+++..++||++++|+++|++|..|+.+
T Consensus        79 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          79 LRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             HHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence            99999999999999997799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.62  E-value=1.1e-14  Score=105.29  Aligned_cols=105  Identities=30%  Similarity=0.285  Sum_probs=94.5

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHH
Q 023512          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (281)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  230 (281)
                      .++.++++++++.++.+.|.+.+.+++||++ +|+++|+++..+++. .      ....++.++|...+.++++++++.+
T Consensus         2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~-~------~~~~~v~~~~~~~~~~v~~~~~l~~   74 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAG-K------DPDTTIEKVMTKNPITVNPKTSVAS   74 (108)
T ss_pred             CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhc-c------cccccHHHHhcCCCeEECCCCCHHH
Confidence            5688899999999999999988889999999 799999999999962 1      1134788999888999999999999


Q ss_pred             HHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       231 ~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      +++.|.+++...+||++++|+++|++|..|+++
T Consensus        75 ~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          75 VAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             HHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            999999999999999998899999999999985

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=6.7e-15  Score=104.15  Aligned_cols=94  Identities=16%  Similarity=0.259  Sum_probs=84.9

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (281)
                      ++..+++++++.++++.|.+.+.+.+||++ +|+++|+++..|++. ..                 .+.++++++++.++
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~-~~-----------------~~~~v~~~~~l~~a   63 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIA-KS-----------------EVVTATKRTTVSEC   63 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhc-CC-----------------CcEEecCCCCHHHH
Confidence            477899999999999999888999999998 799999999999962 10                 18889999999999


Q ss_pred             HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      ++.|.+++.+++||++++|+++|+||.+|++++
T Consensus        64 ~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~~   96 (96)
T cd04614          64 AQKMKRNRIEQIPIINGNDKLIGLLRDHDLLKP   96 (96)
T ss_pred             HHHHHHhCCCeeeEECCCCcEEEEEEHHHhhcC
Confidence            999999999999999987999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.62  E-value=2e-14  Score=104.04  Aligned_cols=108  Identities=26%  Similarity=0.335  Sum_probs=94.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (281)
                      ++.++++++++.++++.|.+.+++++||+++|++.|+++..|+++ .......  ..++.+++..++.++++++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~-~~~~~~~--~~~v~~~~~~~~~~v~~~~~~~~~~   78 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAH-AIARGLE--LAKVKDVMTKDVITIDEDEQLYDAI   78 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHH-HHhcccc--ccCHHHHhcCCceEECCCCCHHHHH
Confidence            477899999999999999998999999998889999999999974 4333221  2468888888899999999999999


Q ss_pred             HHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      +.|.+.+.+++||++++|+++|+|+..|+++
T Consensus        79 ~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          79 RLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             HHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            9999999999999998799999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.62  E-value=1.8e-14  Score=104.29  Aligned_cols=107  Identities=33%  Similarity=0.383  Sum_probs=94.4

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHH
Q 023512          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (281)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  230 (281)
                      +++.+++++.++.++++.|.+++.+++||++ +|++.|+++..+++. ......    .++.++|.+.+.++.+++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~-~~~~~~----~~~~~~~~~~~~~v~~~~~l~~   76 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISK-AVARDK----KSVEDIMTRNVITATPDEPIDV   76 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHH-HHhhCc----cCHHHhcCCCCeEECCCCcHHH
Confidence            5678899999999999999988999999998 789999999999974 333221    2578888888999999999999


Q ss_pred             HHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       231 ~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      +++.|.+++.+.+||++++|+++|+||..|+++
T Consensus        77 ~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          77 AARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             HHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            999999999999999998899999999999965

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.61  E-value=7.2e-15  Score=107.07  Aligned_cols=111  Identities=26%  Similarity=0.350  Sum_probs=95.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcC-CCCccccccccccCCCeeeeCCCCHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-LPADSTLVEKVMTPNPECATIDTPIVD  230 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~-~~~~~~~v~~~~~~~~~~v~~~~~l~~  230 (281)
                      ++.+++++.++.++.+.|.+.+.+.+||++ +++++|+++..++++.+.... ......++.++|...+..+++++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   81 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVD   81 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHH
Confidence            467799999999999999888888999998 789999999999985554322 112245788999888999999999999


Q ss_pred             HHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       231 ~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      +++.|.+++.+++||+++ |+++|+||..|++++
T Consensus        82 ~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~~  114 (114)
T cd04629          82 LAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLRA  114 (114)
T ss_pred             HHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhcC
Confidence            999999999999999986 999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.61  E-value=1.9e-14  Score=104.58  Aligned_cols=109  Identities=30%  Similarity=0.488  Sum_probs=95.2

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (281)
                      ++.+++++.++.++++.|.+.+..++||++ +|+++|+++..|+++.+.. ..+. ..++.++|..+++++.+++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~-~~~~-~~~v~~~~~~~~~~v~~~~~~~~~   79 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAA-GIDL-DTPVSEIMTRDLVTVDPDEPVAEA   79 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhc-cCCC-ccCHHHhccCCCEEECCCCcHHHH
Confidence            467899999999999999988999999999 7999999999999744433 3222 346888888889999999999999


Q ss_pred             HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      ++.|.+++...+||++++|+++|++|..|+++
T Consensus        80 ~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          80 AKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             HHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence            99999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.61  E-value=2e-14  Score=104.25  Aligned_cols=109  Identities=35%  Similarity=0.490  Sum_probs=95.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (281)
                      ++.+++++.++.++.+.|.+.+.+.+||+++++++|+++..|+++.+...... ...++.+++...++++++++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLD-PDTPVSEVMTAPPITIPPDATVFEAL   80 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhccCCC-ccCCHHHHhCCCCeEECCCCcHHHHH
Confidence            46789999999999999988888999999989999999999997544443222 23478889988999999999999999


Q ss_pred             HHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      +.|.+++.+++||+++ |+++|++|..|+++
T Consensus        81 ~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          81 LLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             HHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            9999999999999986 99999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.61  E-value=2.2e-14  Score=103.85  Aligned_cols=108  Identities=23%  Similarity=0.381  Sum_probs=95.5

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (281)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (281)
                      .++.+++.+.++.++.+.|.+.+..++||+++|+++|+++..|++ .......  ...++.++|.+.+.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~-~~~~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~   78 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVE-KALRHGL--GHAPVKDYMSTDVVTVPPDTPLSEV   78 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHH-HHHhccc--ccCcHHHHhcCCCEEECCCCcHHHH
Confidence            467889999999999999998888999999889999999999997 4443322  3457889999999999999999999


Q ss_pred             HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      ++.|.+++.+++||++ +|+++|+||..|+++
T Consensus        79 ~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          79 QELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             HHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence            9999999999999998 899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.61  E-value=1.8e-14  Score=106.11  Aligned_cols=112  Identities=26%  Similarity=0.375  Sum_probs=95.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCC---------CccccccccccCCCeeee
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP---------ADSTLVEKVMTPNPECAT  223 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~---------~~~~~v~~~~~~~~~~v~  223 (281)
                      ++.+++++.++.++++.|.+.+...+||+++|+++|+++..|+++........         ....++.++|.+++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPITVS   81 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeEeC
Confidence            46779999999999999999889999999989999999999997433221110         112467788888999999


Q ss_pred             CCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       224 ~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      +++++.++++.|.+.+.+++||++++|+++|+||..|++++
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~~  122 (122)
T cd04585          82 PDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFRA  122 (122)
T ss_pred             CCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhhC
Confidence            99999999999999999999999987999999999999863

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.61  E-value=4.5e-15  Score=122.91  Aligned_cols=119  Identities=24%  Similarity=0.248  Sum_probs=109.6

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCe
Q 023512          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  220 (281)
Q Consensus       142 ~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~  220 (281)
                      ..+.++|+|..+...+.+++++.+-.++..+.+++++||+| ..+++|+||.+|+.      .. ..+.++..+|+++|.
T Consensus       188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~------~~-~~~t~ieKVMtknp~  260 (432)
T COG4109         188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVL------DK-KPSTTIEKVMTKNPI  260 (432)
T ss_pred             eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhh------cC-CCCccHHHHhccCCe
Confidence            45799999999999999999999999999999999999999 89999999999996      22 235589999999999


Q ss_pred             eeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      ++.+.+++..+.+.|...++.-+||++++.+++|+||+.|++++...
T Consensus       261 tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~  307 (432)
T COG4109         261 TVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM  307 (432)
T ss_pred             eecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988543

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.61  E-value=8.1e-15  Score=110.38  Aligned_cols=112  Identities=28%  Similarity=0.395  Sum_probs=95.7

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCC---------------------CCccc
Q 023512          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL---------------------PADST  209 (281)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~---------------------~~~~~  209 (281)
                      .++.+++++.++.++++.|.+.++.++||++ +++++|+++..|+++.......                     .....
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR   81 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence            5688899999999999999999999999999 7899999999999743322110                     11234


Q ss_pred             cccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       210 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      ++.++|..++..+++++++.++++.|.+.+.+++||+| +|+++|+||..|++++
T Consensus        82 ~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~~  135 (135)
T cd04586          82 KVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLRA  135 (135)
T ss_pred             CHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhcC
Confidence            68888888899999999999999999999999999999 8999999999999864

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.60  E-value=1.4e-14  Score=105.68  Aligned_cols=108  Identities=20%  Similarity=0.247  Sum_probs=91.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcC-ccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccC--CCeeeeCCCCH
Q 023512          153 KVVTISPTDTVLMATKKMLELR-LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPI  228 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~-~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l  228 (281)
                      ++.+++++.++.++++.|.+++ .+.+||++ +|+++|+++..|++...... .  ...++.++|..  .++++.+++++
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~-~--~~~~v~~~~~~~~~~~~v~~~~~l   78 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQ-W--AQTTVIQVMTPAAKLVTVLSEESL   78 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhh-c--cccchhhhhcccccceEECCCCcH
Confidence            4778999999999999997664 88999998 78999999999997443321 1  13468888864  36789999999


Q ss_pred             HHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          229 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       229 ~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      .++++.|.+++.+++||++++|+++|++|..|+++
T Consensus        79 ~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          79 AEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             HHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            99999999999999999997799999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=1.3e-14  Score=107.90  Aligned_cols=111  Identities=19%  Similarity=0.290  Sum_probs=90.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHH-----HHhcCCCCccccccccccCCCeee----
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR-----VISQNLPADSTLVEKVMTPNPECA----  222 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~-----~~~~~~~~~~~~v~~~~~~~~~~v----  222 (281)
                      ++.+++++.++.++++.|.+.+.+.+||++ +|+++|+++..|+...     ...........++.++|.+.+..+    
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~   81 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL   81 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence            367899999999999999988999999999 7899999999999742     222111222456889997655433    


Q ss_pred             --eCCCCHHHHHHHhHhCCCCeeeEecCC-CcEEEEEEhhhHHH
Q 023512          223 --TIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITH  263 (281)
Q Consensus       223 --~~~~~l~~~~~~~~~~~~~~l~Vv~~~-~~~~Gvis~~di~~  263 (281)
                        .+++++.++++.|.+++.+++||+|++ |+++|+||..|+++
T Consensus        82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence              368899999999999999999999986 79999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.60  E-value=2.2e-14  Score=103.08  Aligned_cols=103  Identities=22%  Similarity=0.268  Sum_probs=91.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (281)
                      ++.+++++.++.++++.|.+.+.++++|++ +|+++|+++..|+++ ...       .++.++|.+.+..+.+++++.++
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~   73 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAAR-ASG-------GCCGDHAEPFKVTVSVDDDLRIV   73 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHH-hcc-------cchhhhcccCCEEECCCCCHHHH
Confidence            467899999999999999888899999998 899999999999973 211       24678888888889999999999


Q ss_pred             HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      ++.|.+++...+||+|++|+++|+|+..|+++
T Consensus        74 ~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          74 LSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             HHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            99999999999999998899999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.60  E-value=3.1e-14  Score=103.30  Aligned_cols=110  Identities=21%  Similarity=0.226  Sum_probs=94.2

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (281)
                      +++.++++.++.++++.|.+.+...++|+++|++.|+++..|+++.... .......++.++|.+++..+++++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~-~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLL-DGLPSSTPVGEIATFPLITVDPDDFLFNAL   80 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHHc-CCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence            3667899999999999999888899999987889999999999744332 222234578899988899999999999999


Q ss_pred             HHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      +.|.+++...+||++ +|+++|+||..|++++
T Consensus        81 ~~~~~~~~~~~~Vv~-~~~~~G~it~~dl~~~  111 (111)
T cd04589          81 LLMTRHRIHRVVVRE-GGEVVGVLEQTDLLSF  111 (111)
T ss_pred             HHHHHhCccEEEEee-CCEEEEEEEhHHhhcC
Confidence            999999999999998 5899999999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=1.9e-14  Score=107.94  Aligned_cols=110  Identities=26%  Similarity=0.351  Sum_probs=93.9

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcc--------------------ccc
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS--------------------TLV  211 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~--------------------~~v  211 (281)
                      ++.++.+++++.++++.|.+.+++++||++ +|+++|+++..|+++.+. .......                    .++
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIY-KGKGLFYVTLLYSVIFLDESKIKKLLGKKV   80 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHh-ccCCcccccccccccccchHHHHHHcCCCH
Confidence            467899999999999999988899999999 789999999999974333 2221111                    267


Q ss_pred             cccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       212 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      .++|.+++..+.+++++.++++.|.+.+.+.+||+++ |+++|++|..|++++
T Consensus        81 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~~  132 (132)
T cd04636          81 EEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIRS  132 (132)
T ss_pred             HHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhcC
Confidence            7888888999999999999999999999999999997 999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=2.1e-14  Score=105.85  Aligned_cols=111  Identities=32%  Similarity=0.346  Sum_probs=94.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCC---------CCccccccccccCCCeeee
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL---------PADSTLVEKVMTPNPECAT  223 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~---------~~~~~~v~~~~~~~~~~v~  223 (281)
                      ++.++++++++.++++.|.+.+.+++||+++|+++|+++..++++.+.....         .....++.++|..++.+++
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITIE   81 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceEEC
Confidence            4678999999999999999889999999999999999999999744332111         1123467788888899999


Q ss_pred             CCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       224 ~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      +++++.++++.|.+.+.+.+||+++ |+++|+||..|++++
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~~  121 (121)
T cd04633          82 PDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILRY  121 (121)
T ss_pred             CCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhcC
Confidence            9999999999999999999999996 999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.59  E-value=3.8e-14  Score=102.75  Aligned_cols=107  Identities=21%  Similarity=0.234  Sum_probs=91.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  230 (281)
                      ++.+++++.++.++.+.|.+.+.+++||++ + |+++|+++..|+++ .......  ..++.+++ .++.++.+++++.+
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~-~~~~~~~--~~~~~~~~-~~~~~v~~~~~l~~   77 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLR-ALAEGEE--DLDLRDLL-RPPLFVPESTPLDD   77 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHH-HHHcCCC--cCCHHHHh-cCCeecCCCCcHHH
Confidence            477899999999999999988899999998 6 89999999999974 4433221  13566666 56889999999999


Q ss_pred             HHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       231 ~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      +++.|.+++.+++||++++|+++|+||..|+++
T Consensus        78 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          78 LLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             HHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            999999999999999998899999999999975

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=1.8e-14  Score=106.32  Aligned_cols=112  Identities=29%  Similarity=0.338  Sum_probs=95.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcC---CC-----CccccccccccCCCeeee
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN---LP-----ADSTLVEKVMTPNPECAT  223 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~---~~-----~~~~~v~~~~~~~~~~v~  223 (281)
                      ++.+++++.++.++++.|.+.+.+++||++ +|+++|+++..|+++......   ..     ....++.+++.+.+..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVT   81 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeEC
Confidence            477899999999999999988899999999 799999999999974321110   00     123467788888899999


Q ss_pred             CCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       224 ~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      +++++.++++.|.+.+.+++||++++|+++|++|..|++++
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~~  122 (122)
T cd04635          82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLKA  122 (122)
T ss_pred             CCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhcC
Confidence            99999999999999999999999988999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.59  E-value=1.7e-14  Score=121.98  Aligned_cols=126  Identities=18%  Similarity=0.245  Sum_probs=107.7

Q ss_pred             hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHHHHHHhcCCCCcccccccccc
Q 023512          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (281)
Q Consensus       139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~  216 (281)
                      +...++.++|+|..++.+++++.++.++++.+.+++++++||++ + +.++|+++.+|++. .......  ...+.++|.
T Consensus        64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~-~~~~~~~--~~~l~~l~r  140 (292)
T PRK15094         64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLP-FMRSDAE--AFSMDKVLR  140 (292)
T ss_pred             cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHh-HhhccCC--cCCHHHHcC
Confidence            46678999999766899999999999999999999999999998 4 78999999999974 3322111  234778885


Q ss_pred             CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      + +.+++++.++.++++.|.+++.+.+||+|+.|.++|+||..||+......
T Consensus       141 ~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGe  191 (292)
T PRK15094        141 Q-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGE  191 (292)
T ss_pred             C-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCC
Confidence            4 56899999999999999999999999999999999999999999986653

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.59  E-value=4.3e-14  Score=102.04  Aligned_cols=106  Identities=25%  Similarity=0.332  Sum_probs=93.7

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHH
Q 023512          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (281)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  230 (281)
                      .++..++++.++.++++.|.+.+..++||++ +|+++|+++..|++. ....     ..++.++|...+.++++++++.+
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~-~~~~-----~~~v~~~~~~~~~~v~~~~~~~~   75 (109)
T cd04583           2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQ-AYKE-----AKSLEDIMLEDVFTVQPDASLRD   75 (109)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHH-Hhhc-----CCcHhHhhcCCceEECCCCcHHH
Confidence            4577899999999999999988999999999 789999999999963 3221     23678888888999999999999


Q ss_pred             HHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       231 ~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      +++.|.+.+..++||++++|+++|++|.+|+++
T Consensus        76 ~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          76 VLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             HHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence            999999999999999998899999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=3.2e-14  Score=103.18  Aligned_cols=108  Identities=25%  Similarity=0.293  Sum_probs=93.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (281)
                      ++.+++++.++.++++.|.+.+.+++||++ +|++.|+++..|++ .+...... ...++.++|.+++.++.+++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~   79 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDIL-DLDLFESF-LEKKVFNIVSQDVFYVNEEDTIDEA   79 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhH-HHHhhccc-ccCcHHHHhcCCcEEEcCCCcHHHH
Confidence            467899999999999999988999999998 79999999999997 44332211 1346888898889999999999999


Q ss_pred             HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      ++.|.+++..++||+++ |+++|+||..|++.
T Consensus        80 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          80 LDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             HHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence            99999999999999996 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=3.4e-14  Score=105.89  Aligned_cols=112  Identities=24%  Similarity=0.223  Sum_probs=93.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcC------------CCCccccccccccCCC
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN------------LPADSTLVEKVMTPNP  219 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~------------~~~~~~~v~~~~~~~~  219 (281)
                      ++.+++++.++.++++.|.+.+.+.+||++ +|++.|++|..|++..+....            ......++.++|..++
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSPV   81 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCCC
Confidence            467789999999999999999999999999 789999999999974332210            0011346788898889


Q ss_pred             eeeeCCCCHHHHHHHhHhCCCCeeeEec--CCCcEEEEEEhhhHHHh
Q 023512          220 ECATIDTPIVDALHIMHDGKFLHLPVVD--RDGDVVDVVDVIHITHA  264 (281)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vv~--~~~~~~Gvis~~di~~~  264 (281)
                      ++++++.++.++++.|.+.+...+||++  ++|+++|+||..|++++
T Consensus        82 ~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~  128 (128)
T cd04632          82 ITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA  128 (128)
T ss_pred             ceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence            9999999999999999999999999984  46999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.58  E-value=5.5e-14  Score=101.80  Aligned_cols=109  Identities=31%  Similarity=0.339  Sum_probs=94.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (281)
                      ++.++.++.++.++++.|.+.+...+||+++++++|+++..|+++ ....... ...++.++|.+++..+.+++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~-~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~   79 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRR-VPAEGRE-ATVLVGDVMTRDPVTASPDETLRDAL   79 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHH-HHhcCcc-cccCHHHhccCCCeEECCCCCHHHHH
Confidence            477899999999999999988889999998899999999999974 3332221 12356788888999999999999999


Q ss_pred             HHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      +.|.+++.+++||++++|+++|+||..|+++
T Consensus        80 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          80 KRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             HHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            9999999999999997799999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.58  E-value=4.6e-14  Score=102.00  Aligned_cols=109  Identities=25%  Similarity=0.298  Sum_probs=91.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (281)
                      ++.+++++.++.++.+.|.+.+.+++||+++|+++|+++..|+++.+... ......++.+++.+.+.++++++++.++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   80 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEG-KAKFSLPVREVMGEPLPTVDPDAPIEELS   80 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhcc-ccccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence            46789999999999999999999999999989999999999997443332 22223468888888899999999999999


Q ss_pred             HHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      +.|.+ . ..+||++++|+++|++|.+|++++
T Consensus        81 ~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~~  110 (110)
T cd04609          81 ELLDR-G-NVAVVVDEGGKFVGIITRADLLKY  110 (110)
T ss_pred             HHHHh-C-CceeEEecCCeEEEEEeHHHhhcC
Confidence            99988 3 347888888999999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=5.1e-14  Score=100.00  Aligned_cols=91  Identities=20%  Similarity=0.278  Sum_probs=82.5

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d-~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (281)
                      +++++++++++.+|.++|.+++++.+||++ + ++++|+++..|+...                                
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~--------------------------------   49 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI--------------------------------   49 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh--------------------------------
Confidence            578899999999999999999999999998 3 799999999998642                                


Q ss_pred             hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHH
Q 023512          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDIL  196 (281)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~  196 (281)
                                              -.+.++.+++++.++++.|.+++.+++||++ + |+++|++|.+|++
T Consensus        50 ------------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~   96 (98)
T cd04618          50 ------------------------LRLVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRIL   96 (98)
T ss_pred             ------------------------eeeEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhh
Confidence                                    1167899999999999999999999999999 5 8999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.57  E-value=6.1e-14  Score=126.93  Aligned_cols=174  Identities=19%  Similarity=0.223  Sum_probs=131.0

Q ss_pred             cccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhh
Q 023512           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH  120 (281)
Q Consensus        42 ~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (281)
                      .++++|.++++++++++++.+++++|.+++++.+||+++ ++++|+++..|+....                        
T Consensus        88 ~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~------------------------  143 (486)
T PRK05567         88 RSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET------------------------  143 (486)
T ss_pred             hhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc------------------------
Confidence            467889999999999999999999999999999999985 9999999999985310                        


Q ss_pred             hCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHH
Q 023512          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  199 (281)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~  199 (281)
                                        ....++.++|.. .++.++++++++.++++.|.+++.+.+||++ +|+++|+||.+|+++..
T Consensus       144 ------------------~~~~~V~dim~~-~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        144 ------------------DLSQPVSEVMTK-ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE  204 (486)
T ss_pred             ------------------cCCCcHHHHcCC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence                              011235556642 5689999999999999999999999999999 89999999999998554


Q ss_pred             HhcCC--C-CccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhh
Q 023512          200 ISQNL--P-ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (281)
Q Consensus       200 ~~~~~--~-~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~  265 (281)
                      .....  + .....+...|..     ++  .-.+..+.|.+.+.+.+.|-..+|+..|+++..+.++..
T Consensus       205 ~~p~a~~d~~g~l~V~aai~~-----~~--~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~  266 (486)
T PRK05567        205 EFPNACKDEQGRLRVGAAVGV-----GA--DNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAK  266 (486)
T ss_pred             hCCCcccccCCCEEEEeeccc-----Cc--chHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhh
Confidence            32211  0 011223333332     23  227888888889998664433468888888777776654

>PRK11573 hypothetical protein; Provisional

Probab=99.57  E-value=8.6e-14  Score=123.18  Aligned_cols=167  Identities=13%  Similarity=0.153  Sum_probs=128.5

Q ss_pred             HHHHhcCCCCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHH
Q 023512           30 RVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAE  105 (281)
Q Consensus        30 ~~~~~~~~~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~  105 (281)
                      .++.+...+.+.+++++|++  ++.+++.++++.++++.+.+++++++||+++  ++++|++..+|++......      
T Consensus       176 ~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~------  249 (413)
T PRK11573        176 DMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK------  249 (413)
T ss_pred             HHHHHHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhcc------
Confidence            34456678999999999986  7899999999999999999999999999975  8999999999998532110      


Q ss_pred             hhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CC
Q 023512          106 KGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN  184 (281)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~  184 (281)
                        ...                   . ..         .+.+++   +++.+++++.++.++++.|++++.+.++|+| .|
T Consensus       250 --~~~-------------------~-~~---------~l~~~~---r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG  295 (413)
T PRK11573        250 --KEF-------------------T-KE---------NMLRAA---DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYG  295 (413)
T ss_pred             --CcC-------------------C-HH---------HHHhhc---cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCC
Confidence              000                   0 00         011222   5688999999999999999999999999999 88


Q ss_pred             eeeEeeeHHHHHHHHHhcCCCCcccc-ccccc--cCCCeeeeCCCCHHHHHHHhH
Q 023512          185 KPRGILTSKDILMRVISQNLPADSTL-VEKVM--TPNPECATIDTPIVDALHIMH  236 (281)
Q Consensus       185 ~~~Givt~~di~~~~~~~~~~~~~~~-v~~~~--~~~~~~v~~~~~l~~~~~~~~  236 (281)
                      ...|+||..|++..++++-.+..+.. -..+.  ..+.+.++...++.++.+.+-
T Consensus       296 ~~~GiVTleDilEeivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~d~~~~l~  350 (413)
T PRK11573        296 DIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFN  350 (413)
T ss_pred             CeEEEeeHHHHHHHHhCCCCcccCcccccceEEecCCEEEEEeeeEHHHHHHHhC
Confidence            99999999999988887754432211 11122  245678899999999988873

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=8.5e-14  Score=102.73  Aligned_cols=112  Identities=20%  Similarity=0.337  Sum_probs=95.2

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcC--CC-------CccccccccccCCCeeee
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN--LP-------ADSTLVEKVMTPNPECAT  223 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~--~~-------~~~~~v~~~~~~~~~~v~  223 (281)
                      ++.+++++.++.++++.|.+.+++++||+++|+++|+++..++++.+....  ..       ....++.++|...++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITVS   81 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCeeeC
Confidence            467899999999999999988999999999899999999999975432110  00       012367888888999999


Q ss_pred             CCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       224 ~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      +++++.++++.|.+++...+||++++|+++|+++..|++++
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~  122 (122)
T cd04637          82 PDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY  122 (122)
T ss_pred             CCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence            99999999999999999999999988999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.57  E-value=2.6e-14  Score=128.65  Aligned_cols=119  Identities=28%  Similarity=0.276  Sum_probs=103.5

Q ss_pred             eeEeCCCCcHHHHHHHHHHcCccEEEEEeC----CeeeEeeeHHHHHHHHHhcCCCCccccccccccC--CCeeeeCCCC
Q 023512          154 VVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTP  227 (281)
Q Consensus       154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~  227 (281)
                      ++++++++|+.++++.|.+++++.+||+++    ++++|+||..|+. .. .   ...+.+++++|++  ++++++++++
T Consensus       107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr-~~-~---~~~~~~V~dIMt~~~~~itv~~d~~  181 (502)
T PRK07107        107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYR-IS-R---MSLDTKVKDFMTPFEKLVTANEGTT  181 (502)
T ss_pred             CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhh-cc-c---cCCCCCHHHHhCCCCCeEEECCCCc
Confidence            468999999999999999999999999994    7999999999994 22 1   1234589999986  7789999999


Q ss_pred             HHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhchHHHHHHHHH
Q 023512          228 IVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATEILLDQIMR  277 (281)
Q Consensus       228 l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~~~~~~~~~~  277 (281)
                      +.+|++.|.++++..+||+|++|+++|+||.+|+++...++....+++.+
T Consensus       182 l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a~~d~~gr  231 (502)
T PRK07107        182 LKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKR  231 (502)
T ss_pred             HHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhhhhhhccC
Confidence            99999999999999999999889999999999999998777766665543

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.56  E-value=3.5e-14  Score=125.68  Aligned_cols=123  Identities=16%  Similarity=0.171  Sum_probs=107.7

Q ss_pred             hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe--CCeeeEeeeHHHHHHHHHhcCCCCcccccccccc
Q 023512          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (281)
Q Consensus       139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~  216 (281)
                      +...++.++|+|..++.+++.++++.++++.+.+++++++||.+  .+.++|+++.+|++. ....    ...++.+++.
T Consensus       188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~-~~~~----~~~~l~~~~~  262 (408)
T TIGR03520       188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLP-HLNK----KNFDWQSLLR  262 (408)
T ss_pred             cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHh-Hhcc----CCCCHHHHcC
Confidence            45678999999888999999999999999999999999999998  368999999999983 3322    1235677774


Q ss_pred             CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                       ++.+++++.++.++++.|.+++.+.++|+||.|..+|+||.+||+.....
T Consensus       263 -~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivg  312 (408)
T TIGR03520       263 -EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVG  312 (408)
T ss_pred             -CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhC
Confidence             68899999999999999999999999999999999999999999998643

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.56  E-value=1.1e-13  Score=99.54  Aligned_cols=105  Identities=27%  Similarity=0.377  Sum_probs=93.2

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (281)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (281)
                      +++.+++.+.++.++++.|.+.+...+||+++++++|+++..|++. .      ....++.++|...+..+.+++++.++
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~-~------~~~~~~~~~~~~~~~~v~~~~~l~~~   74 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLG-K------DPDETVEEIMSKDLVVAVPEMDIMDA   74 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhc-c------CccccHHHhCCCCCeEECCCCCHHHH
Confidence            4578899999999999999888888899998899999999999963 1      11346888998889999999999999


Q ss_pred             HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      ++.|.+++..++||++++|+++|+++..|+++
T Consensus        75 ~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          75 ARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             HHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            99999999999999998899999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.56  E-value=4e-14  Score=131.22  Aligned_cols=127  Identities=21%  Similarity=0.233  Sum_probs=108.7

Q ss_pred             hhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcccccccccc
Q 023512          138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (281)
Q Consensus       138 ~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~  216 (281)
                      .+...+++++|.  +++.++++++++.++.+.|.+++.+.+||+| +++++|+++.+|+.+.+.... .....++.++|+
T Consensus       443 ~L~~~~V~dim~--~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~-~~~~~~v~dim~  519 (574)
T PRK01862        443 RLRTTQMRELIQ--PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR-DTTDKTAADYAH  519 (574)
T ss_pred             HHhhCcHHHHhc--CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc-ccccchHHHhcc
Confidence            345567889997  6788899999999999999999999999999 789999999999975443332 222347889999


Q ss_pred             CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCC--CcEEEEEEhhhHHHhhhc
Q 023512          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~--~~~~Gvis~~di~~~~~~  267 (281)
                      +++.++++++++.++++.|.+++.+.+||+|++  ++++|+||++|++++..+
T Consensus       520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence            999999999999999999999999999999876  489999999999998654

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.56  E-value=7.5e-14  Score=100.92  Aligned_cols=106  Identities=32%  Similarity=0.453  Sum_probs=91.9

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeC-CCCHH
Q 023512          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI-DTPIV  229 (281)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~-~~~l~  229 (281)
                      +++.+++++.++.++.+.|.+.+...+||++ +|++.|+++..+++. ..     ....++.++|...+..+.+ ++++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~-~~-----~~~~~v~~~~~~~~~~~~~~~~~l~   75 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRF-ET-----DLDKPVSEVMTPENLLTTVEGTSLE   75 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeee-cc-----cCCCCHHHhcccCceEEecCCCCHH
Confidence            4578899999999999999988999999998 789999999999852 21     1234788888777777777 99999


Q ss_pred             HHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          230 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       230 ~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      ++++.|.+.+.+.+||++++|+++|+||.+|+++
T Consensus        76 ~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          76 EALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             HHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            9999999999999999998899999999999975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.56  E-value=1.1e-13  Score=99.30  Aligned_cols=103  Identities=26%  Similarity=0.358  Sum_probs=91.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (281)
                      ++.++++++++.++++.|.+.+.+.+||+++++++|+++..++++ ..      ...++.++|...+.++++++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~-~~------~~~~~~~~~~~~~~~v~~~~~l~~~~   74 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRR-AH------PNRLVADAMTREVVTISPEASLLEAK   74 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhhc-cc------ccCCHHHHccCCCEEECCCCCHHHHH
Confidence            467789999999999999888889999999899999999999963 21      12368888988999999999999999


Q ss_pred             HHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      +.|.+++..++||+++ |+++|++|..|++.
T Consensus        75 ~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~  104 (105)
T cd04599          75 RLMEEKKIERLPVLRE-RKLVGIITKGTIAL  104 (105)
T ss_pred             HHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence            9999999999999996 99999999999873

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.55  E-value=1.5e-13  Score=122.77  Aligned_cols=174  Identities=14%  Similarity=0.206  Sum_probs=137.2

Q ss_pred             EEEEehHHHHHHHHHhcCCCCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHH
Q 023512           19 CGILTDKDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLY   94 (281)
Q Consensus        19 ~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~   94 (281)
                      .|.+...+  +.++.+...+.+.+++++|++  ++.+++.+.++.++.+.+.+++++++||+++  +.++|++..+|++.
T Consensus       186 ~g~~~~~E--~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~  263 (429)
T COG1253         186 EGVLEEEE--REMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLR  263 (429)
T ss_pred             cCCcCHHH--HHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHH
Confidence            57777777  477888889999999999986  6788899999999999999999999999994  89999999999987


Q ss_pred             HHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcC
Q 023512           95 DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELR  174 (281)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~  174 (281)
                      +....-.                                       .......+   .++..++++.++.++++.|++.+
T Consensus       264 ~~~~~~~---------------------------------------~~~~~~~~---~~~~~Vpet~~~~~lL~~~r~~~  301 (429)
T COG1253         264 ALLDGQS---------------------------------------DLDLRVLV---RPPLFVPETLSLSDLLEEFREER  301 (429)
T ss_pred             HHhcCcc---------------------------------------ccchhhcc---cCCeEecCCCcHHHHHHHHHHhC
Confidence            6322100                                       00000011   47999999999999999999999


Q ss_pred             ccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccc----cccccccCCCeeeeCCCCHHHHHHHhHh
Q 023512          175 LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADST----LVEKVMTPNPECATIDTPIVDALHIMHD  237 (281)
Q Consensus       175 ~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~----~v~~~~~~~~~~v~~~~~l~~~~~~~~~  237 (281)
                      .+..+|+| .|...|+||..|++..+++.-.+..+.    .+....... +.++...++.+..+.+--
T Consensus       302 ~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~-~~v~G~~~l~e~~~~l~~  368 (429)
T COG1253         302 THMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDG-WLVDGRVPLEELEELLGI  368 (429)
T ss_pred             CeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCc-EEEeccccHHHHHHHhCC
Confidence            99999999 899999999999998888765543321    222222334 778899999888887754

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.55  E-value=5.9e-14  Score=121.42  Aligned_cols=120  Identities=15%  Similarity=0.151  Sum_probs=100.8

Q ss_pred             CcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 023512           39 EETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (281)
Q Consensus        39 ~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d-~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (281)
                      ...+++++|.+  +++++++++|+.+|++.|.+++...+||++ +|+++|+++..|+.+....                 
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~-----------------  262 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDM-----------------  262 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhc-----------------
Confidence            56689999997  899999999999999999999888888887 5899999999998542100                 


Q ss_pred             hHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHH
Q 023512          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDI  195 (281)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di  195 (281)
                            +              ......++.++|.  +++.++.+++++.++++.|.+++.+++||+++|+++|+||.+|+
T Consensus       263 ------~--------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~di  320 (326)
T PRK10892        263 ------G--------------IDLRQASIADVMT--PGGIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDL  320 (326)
T ss_pred             ------C--------------CCcccCCHHHhcC--CCCEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHh
Confidence                  0              0011235778887  67899999999999999999999999999999999999999999


Q ss_pred             HH
Q 023512          196 LM  197 (281)
Q Consensus       196 ~~  197 (281)
                      ++
T Consensus       321 l~  322 (326)
T PRK10892        321 LR  322 (326)
T ss_pred             Hh
Confidence            73

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.54  E-value=1.1e-13  Score=100.90  Aligned_cols=106  Identities=27%  Similarity=0.343  Sum_probs=91.4

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCccEEEEEeC----CeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeC--C
Q 023512          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI--D  225 (281)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~--~  225 (281)
                      .++.++.+++++.++++.|.+.+..++||+++    |+++|+++..|++ ... ..    ..++.++|...+..+..  +
T Consensus         2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~-~~~-~~----~~~v~~~~~~~~~~~~~~~~   75 (114)
T cd04602           2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDID-FLT-DS----ETPLSEVMTPREVLVVAPTG   75 (114)
T ss_pred             CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhh-hhh-cc----CCCHHHhcCCCceEEECCCC
Confidence            45778999999999999998888899999983    8999999999995 221 11    23688999877778866  9


Q ss_pred             CCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          226 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       226 ~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      +++.++++.|.+++.+.+||++++|+++|+||..|+++
T Consensus        76 ~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          76 ITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            99999999999999999999998899999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.54  E-value=1.1e-13  Score=100.58  Aligned_cols=106  Identities=15%  Similarity=0.104  Sum_probs=88.8

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      ++.++++++++.+|++.|.+++.+.+||+++ ++++|+++..|+......                              
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~------------------------------   51 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPN------------------------------   51 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccc------------------------------
Confidence            4678899999999999999999999999985 899999999998642000                              


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                               .....++.++|.  .++.++.+++++.++++.|.+++.+++||++ +|+++|++|.+|++
T Consensus        52 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~  109 (111)
T cd04603          52 ---------DYETLKVCEVYI--VPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELL  109 (111)
T ss_pred             ---------cccccChhheee--cCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhh
Confidence                     001123666675  6688999999999999999999999999999 79999999999996

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.54  E-value=1.9e-13  Score=122.39  Aligned_cols=164  Identities=15%  Similarity=0.149  Sum_probs=123.1

Q ss_pred             CCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 023512           38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (281)
Q Consensus        38 ~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (281)
                      +...+++++|.++++++++++++.+|+++|.+++++.+||+|+ ++++|+|+..|+...                     
T Consensus        86 l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~---------------------  144 (479)
T PRK07807         86 VAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV---------------------  144 (479)
T ss_pred             HhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC---------------------
Confidence            3456788999999999999999999999999999999999985 899999999997321                     


Q ss_pred             HhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHH
Q 023512          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (281)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di  195 (281)
                                            ....++.++|+  .++.++++++++.++++.|.+++...+||+| +++++|+||.+|+
T Consensus       145 ----------------------~~~~~V~diMt--~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DI  200 (479)
T PRK07807        145 ----------------------DRFTQVRDVMS--TDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGA  200 (479)
T ss_pred             ----------------------ccCCCHHHhcc--CCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHH
Confidence                                  00124677787  7899999999999999999999999999999 8999999999999


Q ss_pred             HHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCc
Q 023512          196 LMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD  251 (281)
Q Consensus       196 ~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~  251 (281)
                      ++.........   .-..++-...  +.......+..+.|.+.+.+.+.+--.+|.
T Consensus       201 l~~~~~~~~~~---~~g~l~V~aa--v~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~  251 (479)
T PRK07807        201 LRATIYTPAVD---AAGRLRVAAA--VGINGDVAAKARALLEAGVDVLVVDTAHGH  251 (479)
T ss_pred             HHHhhCCchhh---hhhccchHhh--hccChhHHHHHHHHHHhCCCEEEEeccCCc
Confidence            84333221100   0001111111  222334678888888899988644325565

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.54  E-value=1.2e-13  Score=99.97  Aligned_cols=101  Identities=21%  Similarity=0.290  Sum_probs=88.4

Q ss_pred             eCCCCcHHHHHHHHHHcC-----ccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHH
Q 023512          157 ISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (281)
Q Consensus       157 v~~~~~l~~~~~~~~~~~-----~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  230 (281)
                      +.+++++.++++.|.+++     ...+||++ +|+++|+++.+++++.      . .+.++.+++..++..+.+++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~------~-~~~~v~~~~~~~~~~i~~~~~~~~   74 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA------D-PDTPVSDIMDTDVISVSADDDQEE   74 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC------C-CcchHHHHhCCCCeEEcCCCCHHH
Confidence            578899999999998766     46889998 7899999999999631      1 234688888888999999999999


Q ss_pred             HHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       231 ~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      +++.|.+.+.+.+||++++|+++|+||..|++++
T Consensus        75 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          75 VARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             HHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence            9999999999999999988999999999999875

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.54  E-value=8e-14  Score=125.66  Aligned_cols=122  Identities=25%  Similarity=0.303  Sum_probs=104.7

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeC----CeeeEeeeHHHHHHHHHhcCCCCccccccccccC-
Q 023512          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP-  217 (281)
Q Consensus       143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~-  217 (281)
                      .....|.  .++.++++++++.++++.|.+++++.+||+++    ++++|+||.+|+. .. .    ....++.++|++ 
T Consensus        97 ~~e~g~i--~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~-~~-~----~~~~~V~diMt~~  168 (495)
T PTZ00314         97 RFENGFI--MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID-FV-K----DKSTPVSEVMTPR  168 (495)
T ss_pred             ccccccc--cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh-hc-c----cCCCCHHHhhCCc
Confidence            3455665  67899999999999999999999999999984    7999999999995 21 1    124579999987 


Q ss_pred             -CCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhchHHHH
Q 023512          218 -NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATEILL  272 (281)
Q Consensus       218 -~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~~~~~  272 (281)
                       +++++++++++.+++++|.+++...+||+|++++++|+||++||++....+....
T Consensus       169 ~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~  224 (495)
T PTZ00314        169 EKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASL  224 (495)
T ss_pred             CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhh
Confidence             8899999999999999999999999999999999999999999999876554433

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.53  E-value=2.2e-13  Score=97.71  Aligned_cols=101  Identities=27%  Similarity=0.239  Sum_probs=89.2

Q ss_pred             eEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHHHH
Q 023512          155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHI  234 (281)
Q Consensus       155 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~  234 (281)
                      .+++++.++.++++.|.+.+.+++||+++|++.|+++..|+++ ..       ..++.++|...+.++++++++.++++.
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~-~~-------~~~~~~~~~~~~~~v~~~~~l~~a~~~   75 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIEN-AT-------YGDVVDYIVRGIPYVRLTSTAEEAWEV   75 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhh-hc-------ccchhhhhhcCCcEEcCCCCHHHHHHH
Confidence            4579999999999999988999999998899999999999963 11       124677888889999999999999999


Q ss_pred             hHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          235 MHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       235 ~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      |.+++..++||++ +|+++|++|..|++++
T Consensus        76 ~~~~~~~~~~Vv~-~~~~iGvit~~dl~~~  104 (104)
T cd04594          76 MMKNKTRWCPVVD-DGKFKGIVTLDSILDA  104 (104)
T ss_pred             HHHcCcceEEEEE-CCEEEEEEEHHHhhcC
Confidence            9999999999998 6999999999999763

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=8.1e-14  Score=101.63  Aligned_cols=94  Identities=26%  Similarity=0.359  Sum_probs=82.2

Q ss_pred             CCCCCccEEEEEcCC-CcEEEEEehHHHHHHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEee
Q 023512            1 MAARRVDALLLTDSN-ALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE   79 (281)
Q Consensus         1 m~~~~~~~~~v~~~~-~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d   79 (281)
                      |.+++.+.+||.+++ ++++|+++..|+++.+........+.+++++|.+++.++++++++.+|++.|.+++...+||++
T Consensus        19 ~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd   98 (114)
T cd04630          19 MKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVE   98 (114)
T ss_pred             HHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee
Confidence            345778899999987 8999999999998655554445556789999999999999999999999999999999999998


Q ss_pred             CCeEEEEEehHHHHH
Q 023512           80 NGEVIALLDIAKCLY   94 (281)
Q Consensus        80 ~~~~vGvi~~~dll~   94 (281)
                      +++++|+++..|++.
T Consensus        99 ~~~~~Gvi~~~dl~~  113 (114)
T cd04630          99 NNELIGIISLTDIFL  113 (114)
T ss_pred             CCEEEEEEEHHHhhc
Confidence            899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=2.2e-13  Score=96.34  Aligned_cols=91  Identities=25%  Similarity=0.345  Sum_probs=82.9

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      +++++++++++.+|++.|.+++++.+||+|+ ++++|+++..|+...                                 
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~---------------------------------   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK---------------------------------   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC---------------------------------
Confidence            5778999999999999999999999999985 899999999998642                                 


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                                             ..+.++++++++.++++.|.+++.+++||++ +|+++|++|.+|++
T Consensus        49 -----------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~   94 (96)
T cd04614          49 -----------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLL   94 (96)
T ss_pred             -----------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhh
Confidence                                   2277899999999999999999999999999 58999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=3.1e-13  Score=97.53  Aligned_cols=111  Identities=33%  Similarity=0.404  Sum_probs=93.9

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (281)
                      ++.+++.+.++.++.+.|.+.+...+||++ +++++|+++..|++...... .......+.+++...+.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEG-GLDPLVTVGDVMTRDVVTVSPDTSLEEA   80 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhc-cCCccccHHHHhcCCceecCCCcCHHHH
Confidence            367789999999999999988899999999 68999999999997444332 2221222567788889999999999999


Q ss_pred             HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      ++.|.+.+.+.+||++++|+++|+++..|++++
T Consensus        81 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~~  113 (113)
T cd02205          81 AELMLEHGIRRLPVVDDEGRLVGIVTRSDILRA  113 (113)
T ss_pred             HHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhcC
Confidence            999999999999999988999999999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=1.4e-13  Score=101.32  Aligned_cols=116  Identities=23%  Similarity=0.289  Sum_probs=87.9

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (281)
                      +++.++++++++.+|+++|.+++++.+||+++ ++++|+++..|++........                          
T Consensus         1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~--------------------------   54 (120)
T cd04641           1 KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAY--------------------------   54 (120)
T ss_pred             CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCcc--------------------------
Confidence            36788999999999999999999999999985 899999999999864211000                          


Q ss_pred             hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                       ......+...+   .....|.  .++.++++++++.++++.|.+++.+.+||++ +|+++|++|..|++
T Consensus        55 -~~~~~~~~~~~---~~~~~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~  118 (120)
T cd04641          55 -NNLDLTVGEAL---ERRSQDF--EGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDIL  118 (120)
T ss_pred             -ccccCCHHHHH---hhcccCC--CCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhh
Confidence             00000000000   0112232  5678999999999999999999999999999 68999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.51  E-value=5.7e-13  Score=97.38  Aligned_cols=109  Identities=33%  Similarity=0.426  Sum_probs=96.6

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (281)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (281)
                      +++.++.++.++.++...|.++++..+|+.+.++++|++|.+|+++.........  .++.++|..+++++.+++++.++
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~~~~~~--~~v~~v~~~~~~~~~~~~~~~~~   84 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGGKRL--LPVKEVMTKPVVTVDPDTPLEEA   84 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhccCCcc--ccHHHhccCCcEEECCCCCHHHH
Confidence            6689999999999999999999999999999889999999999985555443321  15888998899999999999999


Q ss_pred             HHHhHh-CCCCeeeEecCCC-cEEEEEEhhhHH
Q 023512          232 LHIMHD-GKFLHLPVVDRDG-DVVDVVDVIHIT  262 (281)
Q Consensus       232 ~~~~~~-~~~~~l~Vv~~~~-~~~Gvis~~di~  262 (281)
                      ++.|.+ .+.+.+||+++++ +++|++|.+|++
T Consensus        85 ~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          85 LELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             HHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            999999 7999999999885 999999999974

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.51  E-value=1.4e-13  Score=118.88  Aligned_cols=118  Identities=12%  Similarity=0.160  Sum_probs=100.3

Q ss_pred             cccccccccCC--CeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 023512           40 ETPVSKVMTRN--PTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (281)
Q Consensus        40 ~~~v~dim~~~--~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (281)
                      ..+|+++|.++  +.++++++++.+|.+.|.+++...+||+|+ |+++|+++..|+......                  
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~------------------  257 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVG------------------  257 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhC------------------
Confidence            57899999998  999999999999999999999999999985 899999999998643110                  


Q ss_pred             HhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHH
Q 023512          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (281)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di  195 (281)
                                          ......++.++|.  +++.++.+++++.++++.|.+++...+||++ +|+++|+||.+|+
T Consensus       258 --------------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di  315 (321)
T PRK11543        258 --------------------GGALTTPVNEAMT--RGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDF  315 (321)
T ss_pred             --------------------CCCcCCcHHHhcC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHH
Confidence                                0011224667776  6788999999999999999999999999999 7899999999999


Q ss_pred             HH
Q 023512          196 LM  197 (281)
Q Consensus       196 ~~  197 (281)
                      ++
T Consensus       316 ~~  317 (321)
T PRK11543        316 YQ  317 (321)
T ss_pred             Hh
Confidence            74

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.51  E-value=9.4e-13  Score=117.86  Aligned_cols=166  Identities=13%  Similarity=0.072  Sum_probs=124.8

Q ss_pred             CcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHh
Q 023512           39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (281)
Q Consensus        39 ~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (281)
                      ...++.++|.++++++.+++++.+++++|.+++++.+||+|+++++|+|+..|+...                       
T Consensus        86 ~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~-----------------------  142 (475)
T TIGR01303        86 AFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGV-----------------------  142 (475)
T ss_pred             hhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcC-----------------------
Confidence            466788999999999999999999999999999999999998999999999997321                       


Q ss_pred             hhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHH
Q 023512          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (281)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~  197 (281)
                                          ....++.++|+  .++.++++++++.++++.|.+++...+||++ +|+++|+||.+|+++
T Consensus       143 --------------------~~~~~V~dIMt--~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~  200 (475)
T TIGR01303       143 --------------------DRFTQVRDIMS--TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALR  200 (475)
T ss_pred             --------------------CCCCCHHHHcc--CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHH
Confidence                                01124777787  7899999999999999999999999999999 899999999999984


Q ss_pred             HHHhcCCCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEE
Q 023512          198 RVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVD  254 (281)
Q Consensus       198 ~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~G  254 (281)
                      .........   .-..+.-..  .+.......+.++.|.+.+.+.+.+--.+|+...
T Consensus       201 ~~~~~~~~d---~~grl~Vga--av~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~  252 (475)
T TIGR01303       201 ATIYTPATD---AAGRLRIGA--AVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVK  252 (475)
T ss_pred             HHhCCchhh---hccCceehh--eeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHH
Confidence            333221100   000010011  1333446678888888888888755335566533

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.50  E-value=4e-13  Score=112.62  Aligned_cols=166  Identities=15%  Similarity=0.155  Sum_probs=130.6

Q ss_pred             HHhcCCCCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhh
Q 023512           32 IARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKG  107 (281)
Q Consensus        32 ~~~~~~~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~~~  107 (281)
                      +....++++++|+|+|.+  ++..++.+++.++.++.+.+..+.++|++.+  +.++|++..+++++.....-..     
T Consensus       191 L~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~-----  265 (423)
T COG4536         191 LLGVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEF-----  265 (423)
T ss_pred             HhcccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcc-----
Confidence            345568999999999985  7889999999999999999999999999975  7899999999998875432110     


Q ss_pred             hhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCee
Q 023512          108 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKP  186 (281)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~  186 (281)
                                                         +..+++....+++++++++++.+.+..|.+++-+...|+| .|.+
T Consensus       266 -----------------------------------~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i  310 (423)
T COG4536         266 -----------------------------------TKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDI  310 (423)
T ss_pred             -----------------------------------cHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcE
Confidence                                               0111111116699999999999999999999888888998 9999


Q ss_pred             eEeeeHHHHHHHHHhcCCCCcccccccccc--CCCeeeeCCCCHHHHHHHhHh
Q 023512          187 RGILTSKDILMRVISQNLPADSTLVEKVMT--PNPECATIDTPIVDALHIMHD  237 (281)
Q Consensus       187 ~Givt~~di~~~~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~  237 (281)
                      .|+||.+|++.++.+...+.......++..  .....++.+.++.+..+.|-.
T Consensus       311 ~GLVTLEDIlEEIVGdftde~d~~~~ev~~q~dgs~iidGs~~iRdlNr~l~W  363 (423)
T COG4536         311 QGLVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFIIDGSANVRDLNRALDW  363 (423)
T ss_pred             EeeeeHHHHHHHHhccccccCcccchhhcccCCCcEEEeCCCcHHHHHHhcCC
Confidence            999999999999988766544444445443  345678888888888777754

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.50  E-value=5.6e-13  Score=120.29  Aligned_cols=111  Identities=27%  Similarity=0.284  Sum_probs=99.4

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCccEEEEEeC----CeeeEeeeHHHHHHHHHhcCCCCccccccccccCC--CeeeeCC
Q 023512          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN--PECATID  225 (281)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~  225 (281)
                      +++.++++++|+.++++.|.+++++.+||+++    ++++|+||.+|+. ...     ....++.++|++.  +++++++
T Consensus       108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~-~v~-----~~~~~V~eIMt~~~~lvtv~~~  181 (505)
T PLN02274        108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWD-FVN-----DRETKLSEVMTSDDDLVTAPAG  181 (505)
T ss_pred             CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHh-hcc-----ccCCcHHHHhccCCCcEEECCC
Confidence            77999999999999999999999999999984    7999999999995 321     1245899999876  7899999


Q ss_pred             CCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          226 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       226 ~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      +++.++++.|.+++...+||+|++|+++|+||++||+++...+
T Consensus       182 ~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p  224 (505)
T PLN02274        182 IDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYP  224 (505)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCc
Confidence            9999999999999999999999899999999999999997654

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=1.6e-13  Score=100.13  Aligned_cols=94  Identities=23%  Similarity=0.340  Sum_probs=80.6

Q ss_pred             CCCCCccEEEEEcCCCcEEEEEehHHHHHHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC
Q 023512            1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN   80 (281)
Q Consensus         1 m~~~~~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~   80 (281)
                      |.+++...+||+|++|++.|++|..|+++..........+.+++++|.+++.++.+++++.+|++.|.+++...+||+++
T Consensus        19 ~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~   98 (114)
T cd04619          19 LGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE   98 (114)
T ss_pred             HHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC
Confidence            34678899999998899999999999985443312233467899999999999999999999999999999999999985


Q ss_pred             -CeEEEEEehHHHHH
Q 023512           81 -GEVIALLDIAKCLY   94 (281)
Q Consensus        81 -~~~vGvi~~~dll~   94 (281)
                       ++++|+++..|+++
T Consensus        99 ~~~~~Gvi~~~dl~~  113 (114)
T cd04619          99 NARPLGVLNARDALK  113 (114)
T ss_pred             CCcEEEEEEhHhhcc
Confidence             89999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.50  E-value=3.2e-13  Score=99.37  Aligned_cols=111  Identities=25%  Similarity=0.288  Sum_probs=93.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCC--------CCccccccccccCCCeeee
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL--------PADSTLVEKVMTPNPECAT  223 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~--------~~~~~~v~~~~~~~~~~v~  223 (281)
                      ++.++++++++.++.+.|.+.+..++||++ +|+++|+++..++++.......        .....++.++|...+.+++
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~   81 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITVH   81 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEEC
Confidence            467899999999999999988889999999 6999999999999743221100        1223468888888999999


Q ss_pred             CCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       224 ~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      +++++.++++.|.+.+...+||+++ |+++|+++..|++++
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~~  121 (121)
T cd04584          82 PLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLRT  121 (121)
T ss_pred             CCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhcC
Confidence            9999999999999999999999985 999999999999863

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.50  E-value=4.3e-13  Score=97.76  Aligned_cols=109  Identities=20%  Similarity=0.285  Sum_probs=87.7

Q ss_pred             CCCeEecCCchHHHHHHHhHhCC-CcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCC
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGK-FRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS  126 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~-~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (281)
                      +++.++++++++.+|++.|.+++ ...+||+++ ++++|+++..|++......                           
T Consensus         1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~---------------------------   53 (114)
T cd04801           1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQ---------------------------   53 (114)
T ss_pred             CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhh---------------------------
Confidence            35678999999999999997765 889999986 8999999999987542100                           


Q ss_pred             ChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       127 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                                  ....++.++|.+..++.++.+++++.++++.|.+++.+++||++ +|+++|++|.+|++
T Consensus        54 ------------~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~  112 (114)
T cd04801          54 ------------WAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLL  112 (114)
T ss_pred             ------------ccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEecccee
Confidence                        01123555665323466899999999999999999999999999 58999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.49  E-value=5.5e-13  Score=119.52  Aligned_cols=117  Identities=29%  Similarity=0.342  Sum_probs=102.4

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C---CeeeEeeeHHHHHHHHHhcCCCCcccccccccc-C
Q 023512          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDILMRVISQNLPADSTLVEKVMT-P  217 (281)
Q Consensus       143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~---~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~-~  217 (281)
                      ...+.|.  .++.+++++.++.++++.|.+++++++||++ +   ++++|+||.+|++ ... .    ...++.++|. .
T Consensus        81 ~~~~~~~--~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~-~~~-~----~~~~V~dvm~~~  152 (450)
T TIGR01302        81 RAENGII--SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIR-FVK-D----KGKPVSEVMTRE  152 (450)
T ss_pred             cccCcee--cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHh-hhh-c----CCCCHHHhhCCC
Confidence            3455565  6789999999999999999999999999999 5   6999999999996 221 1    2347899998 4


Q ss_pred             CCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       218 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      +++++++++++.++++.|.+++.+.+||+|++|+++|+||..||++....
T Consensus       153 ~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~  202 (450)
T TIGR01302       153 EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKF  202 (450)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccC
Confidence            89999999999999999999999999999999999999999999988543

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.49  E-value=1.2e-12  Score=94.72  Aligned_cols=107  Identities=21%  Similarity=0.279  Sum_probs=89.8

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      +++.++++++++.+|.+.|.++++..+||+++++++|+++..++......                              
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~~~------------------------------   51 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKALRH------------------------------   51 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHHhc------------------------------
Confidence            46788999999999999999889999999988999999999998653100                              


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~  196 (281)
                               .....++.++|.  .++.++++++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus        52 ---------~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~  108 (110)
T cd04595          52 ---------GLGHAPVKDYMS--TDVVTVPPDTPLSEVQELMVEHDIGRVPVVEDGRLVGIVTRTDLL  108 (110)
T ss_pred             ---------ccccCcHHHHhc--CCCEEECCCCcHHHHHHHHHHcCCCeeEEEeCCEEEEEEEhHHhh
Confidence                     001223555665  668899999999999999999999999999989999999999996

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.49  E-value=6.3e-13  Score=95.57  Aligned_cols=100  Identities=17%  Similarity=0.215  Sum_probs=87.8

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCccEEEEEeC----CeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCC
Q 023512          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTP  227 (281)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~  227 (281)
                      +....++++.++.++.+.+.+.+...+||+++    |+++|+++.+|+.... ..           +|.+++.+++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~-~~-----------~m~~~~~~v~~~~~   69 (105)
T cd04591           2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL-KN-----------YIDPSPFTVSPRTS   69 (105)
T ss_pred             CceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHH-HH-----------hccCCCceECCCCc
Confidence            44678899999999999999888888999985    8899999999996332 21           67778899999999


Q ss_pred             HHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          228 IVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       228 l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      +.++++.|.+++.+++||++ +|+++|+||+.|++++
T Consensus        70 l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~~  105 (105)
T cd04591          70 LEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA  105 (105)
T ss_pred             HHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence            99999999999999999995 7999999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.48  E-value=7.6e-13  Score=97.83  Aligned_cols=120  Identities=22%  Similarity=0.286  Sum_probs=93.4

Q ss_pred             cCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCC
Q 023512           48 TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS  126 (281)
Q Consensus        48 ~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (281)
                      ++++.++++++++.++.+.|.+++++.+||+++ |+++|+++..+++..........                       
T Consensus         1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~-----------------------   57 (124)
T cd04600           1 SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRP-----------------------   57 (124)
T ss_pred             CCCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccch-----------------------
Confidence            357889999999999999999999999999986 99999999999975432110000                       


Q ss_pred             ChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       127 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                          ............++.++|.  .++.++++++++.++++.|.+.+.+++||++ +|+++|++|..|++
T Consensus        58 ----~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~  122 (124)
T cd04600          58 ----LRGRLRGRDKPETVGDIMS--PPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLI  122 (124)
T ss_pred             ----hhhhhhcccccccHHHhcc--CCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhh
Confidence                0000000112234666775  6789999999999999999999999999999 89999999999996

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.48  E-value=1.1e-12  Score=93.96  Aligned_cols=102  Identities=25%  Similarity=0.310  Sum_probs=87.6

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  129 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (281)
                      ++.++++++++.++++.|.+++...+||+++++++|+++..+++...                                 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~~~---------------------------------   48 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRRAH---------------------------------   48 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhhccc---------------------------------
Confidence            56789999999999999999999999999999999999999986420                                 


Q ss_pred             hHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512          130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (281)
Q Consensus       130 ~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~  196 (281)
                                ...++.++|.  .++.++++++++.++++.|.+++..++||+++|+++|++|..|++
T Consensus        49 ----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~~l~  103 (105)
T cd04599          49 ----------PNRLVADAMT--REVVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGIITKGTIA  103 (105)
T ss_pred             ----------ccCCHHHHcc--CCCEEECCCCCHHHHHHHHHHcCCCEeeEEECCEEEEEEEHHHhc
Confidence                      0012344554  678899999999999999999999999999989999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=1.1e-12  Score=96.32  Aligned_cols=110  Identities=22%  Similarity=0.334  Sum_probs=89.2

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      ++.++++++++.+|++.|..+++..+||+++ ++++|+++..++.......                             
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~-----------------------------   52 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGG-----------------------------   52 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcC-----------------------------
Confidence            5788999999999999999999999999986 8999999999987642110                             


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C---CeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~---~~~~Givt~~di~  196 (281)
                              ......++.++|....++.++++++++.++++.|.+++.+++||++ +   |+++|+||.+|++
T Consensus        53 --------~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~  116 (118)
T cd04617          53 --------ADLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNIT  116 (118)
T ss_pred             --------CCccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhee
Confidence                    0011223455664213688999999999999999999999999998 5   6999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1.1e-12  Score=99.82  Aligned_cols=110  Identities=29%  Similarity=0.350  Sum_probs=93.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCC--C-------------------------
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL--P-------------------------  205 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~--~-------------------------  205 (281)
                      ++.++++++++.++++.|.+.+++.+||+++|+++|+++..|+++.+.....  .                         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETKR   81 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHHH
Confidence            4778999999999999999989999999988899999999999744332210  0                         


Q ss_pred             ----CccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          206 ----ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       206 ----~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                          ....++.++|...+.++++++++.++++.|.+.+.+++||+++ |+++|+++..|++.
T Consensus        82 ~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          82 ALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence                0134577788888999999999999999999999999999986 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.47  E-value=1.6e-13  Score=120.56  Aligned_cols=96  Identities=32%  Similarity=0.445  Sum_probs=90.4

Q ss_pred             CCCCCccEEEEEcCCCcEEEEEehHHHHHHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC
Q 023512            1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN   80 (281)
Q Consensus         1 m~~~~~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~   80 (281)
                      |.++|++++.++++++...||+|.+|++++++..+.+. ..+|+.+|+.++++++.++.+.+|+-.|.+++++++||.++
T Consensus       175 m~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~  253 (610)
T COG2905         175 MKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED  253 (610)
T ss_pred             HHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecC
Confidence            67899999999999999999999999999999888887 78999999999999999999999999999999999999999


Q ss_pred             CeEEEEEehHHHHHHHH
Q 023512           81 GEVIALLDIAKCLYDAI   97 (281)
Q Consensus        81 ~~~vGvi~~~dll~~~~   97 (281)
                      |+++|+|+..|++....
T Consensus       254 gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         254 GQPLGILTLTDILRLFS  270 (610)
T ss_pred             CeeeEEeeHHHHHHhhC
Confidence            99999999999987543

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.47  E-value=4.2e-13  Score=112.95  Aligned_cols=112  Identities=26%  Similarity=0.345  Sum_probs=97.6

Q ss_pred             CCccccccCCCc-eeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCC
Q 023512          142 PSLSTIIPEKSK-VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (281)
Q Consensus       142 ~~v~~~m~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~  219 (281)
                      .++.++|.  ++ +.++.+++++.++++.|.+.+.+++||++ +|+++|+++..|+++ ...... ....+++++|.+.+
T Consensus       155 ~~v~~im~--~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~-~~~~~~-~~~~~v~~im~~~~  230 (268)
T TIGR00393       155 VKVKDLMQ--TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRR-ALLGGG-SLKSEVRDFMTLGP  230 (268)
T ss_pred             hhHHHHhC--CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHH-HHhcCC-cccCcHHHhCCCCC
Confidence            46888887  55 88999999999999999988999999999 899999999999974 433222 22457999999999


Q ss_pred             eeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEE
Q 023512          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVD  257 (281)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis  257 (281)
                      .++.+++++.++++.|.+.+..++||+|++|+++|+|+
T Consensus       231 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       231 KTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             eEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence            99999999999999999999999999998899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.47  E-value=6e-13  Score=119.51  Aligned_cols=120  Identities=19%  Similarity=0.256  Sum_probs=104.9

Q ss_pred             cCCCccccccCCCceeEeCCCCcHHHHHHHHHH-----cCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccc
Q 023512          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE-----LRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK  213 (281)
Q Consensus       140 ~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~-----~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~  213 (281)
                      ...++.++|+  +++.+++++.|+.++++.|++     ++...++|+| +++++|+++.+|++..      . .+.++++
T Consensus       129 ~e~tvg~iMt--~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a------~-~~~~v~~  199 (449)
T TIGR00400       129 SDDSAGRIMT--IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA------K-PEEILSS  199 (449)
T ss_pred             CcchHHHhCc--CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC------C-CCCcHHH
Confidence            4577899998  789999999999999999975     3567788888 8899999999999621      1 2347999


Q ss_pred             cccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       214 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      +|.+++.++++++++.++++.|.+++...+||+|++|+++|+||.+|+++.....
T Consensus       200 im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~  254 (449)
T TIGR00400       200 IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE  254 (449)
T ss_pred             HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999886653

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.47  E-value=9.6e-13  Score=119.18  Aligned_cols=116  Identities=27%  Similarity=0.342  Sum_probs=102.9

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcccccccccc-CCCe
Q 023512          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPE  220 (281)
Q Consensus       143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~-~~~~  220 (281)
                      .+.++|.  .++.+++++.++.++++.|.+++++++||++ +++++|+||.+|+.. ..    . ...++.++|. ++++
T Consensus        88 ~~~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~-~~----~-~~~~V~dim~~~~~v  159 (486)
T PRK05567         88 RSESGVV--TDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRF-ET----D-LSQPVSEVMTKERLV  159 (486)
T ss_pred             hhhhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhh-cc----c-CCCcHHHHcCCCCCE
Confidence            3566776  7899999999999999999999999999999 899999999999952 21    1 2347889998 7889


Q ss_pred             eeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (281)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~  266 (281)
                      ++++++++.++++.|.+++.+.+||+|++|+++|+||.+||++...
T Consensus       160 ~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~  205 (486)
T PRK05567        160 TVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE  205 (486)
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence            9999999999999999999999999999999999999999998754

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=5.2e-13  Score=96.92  Aligned_cols=93  Identities=34%  Similarity=0.606  Sum_probs=80.5

Q ss_pred             CCCCccEEEEEcCCCcEEEEEehHHHHHHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeCC
Q 023512            2 AARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENG   81 (281)
Q Consensus         2 ~~~~~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~   81 (281)
                      .+++...+||++++++++|+++..|+++.+..........++.++|.+++.++++++++.++++.|.+++.+.+||++++
T Consensus        20 ~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~~   99 (113)
T cd04623          20 AEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDGG   99 (113)
T ss_pred             HHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeCC
Confidence            45678899999988899999999999865544333333568999999999999999999999999999999999999889


Q ss_pred             eEEEEEehHHHHH
Q 023512           82 EVIALLDIAKCLY   94 (281)
Q Consensus        82 ~~vGvi~~~dll~   94 (281)
                      +++|+++..|+++
T Consensus       100 ~~~Gvit~~di~~  112 (113)
T cd04623         100 KLVGIVSIGDVVK  112 (113)
T ss_pred             EEEEEEEHHHhhc
Confidence            9999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11573 hypothetical protein; Provisional

Probab=99.46  E-value=9.5e-13  Score=116.56  Aligned_cols=128  Identities=15%  Similarity=0.149  Sum_probs=107.8

Q ss_pred             hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe--CCeeeEeeeHHHHHHHHHhcCCCCcccccccccc
Q 023512          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (281)
Q Consensus       139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~  216 (281)
                      +...++.++|+|..++.+++.++++.++++.+.+++++++||.+  .+.++|++..+|++. ............+.+++ 
T Consensus       184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~-~~~~~~~~~~~~l~~~~-  261 (413)
T PRK11573        184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYR-LMTEKKEFTKENMLRAA-  261 (413)
T ss_pred             cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHH-HhhccCcCCHHHHHhhc-
Confidence            46778999999999999999999999999999999999999998  478999999999984 33222111111233444 


Q ss_pred             CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      +++..++++.++.++++.|.+++.+...|+||.|...|+||..||+...-..
T Consensus       262 r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGe  313 (413)
T PRK11573        262 DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGD  313 (413)
T ss_pred             cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCC
Confidence            5789999999999999999999999999999999999999999999986543

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.46  E-value=2e-12  Score=93.69  Aligned_cols=109  Identities=24%  Similarity=0.321  Sum_probs=89.9

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      +++.++++++++.++.+.|.+++++.+||+++++++|+++..+++......                             
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~-----------------------------   51 (111)
T cd04800           1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAE-----------------------------   51 (111)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhcc-----------------------------
Confidence            467889999999999999999999999999989999999999987532110                             


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~  196 (281)
                              ......++.++|.  .++.++++++++.++++.|.+.+.+++||+++|+++|++|.+|++
T Consensus        52 --------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Giit~~di~  109 (111)
T cd04800          52 --------GLDPDTPVSEVMT--APPITIPPDATVFEALLLMLERGIHHLPVVDDGRLVGVISATDLL  109 (111)
T ss_pred             --------CCCccCCHHHHhC--CCCeEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhh
Confidence                    0001123445554  678899999999999999999999999999989999999999996

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.3e-12  Score=95.11  Aligned_cols=111  Identities=25%  Similarity=0.419  Sum_probs=90.0

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (281)
                      +++.++++++++.++.+.|.++++..+||+++ ++++|+++..+++.........                         
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~-------------------------   55 (114)
T cd04629           1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYH-------------------------   55 (114)
T ss_pred             CCCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhc-------------------------
Confidence            35778999999999999999989999999985 8999999999997653221100                         


Q ss_pred             hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (281)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~  196 (281)
                                .....++.++|.  .++.++++++++.++++.|.+.+...+||+++|+++|++|.+|++
T Consensus        56 ----------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~  112 (114)
T cd04629          56 ----------CDGVATVRDIMT--TEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVL  112 (114)
T ss_pred             ----------cCCCccHHHHhc--cCceEECCCCcHHHHHHHHHHhCCCccCEEECCEEEEEEEHHHHh
Confidence                      001123555565  568889999999999999999999999999989999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.46  E-value=2.3e-12  Score=93.19  Aligned_cols=107  Identities=19%  Similarity=0.266  Sum_probs=88.9

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  129 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (281)
                      ++.++++++++.+|++.|.++++..+||+++++++|+++..+++......                              
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~~~------------------------------   51 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLASG------------------------------   51 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHhcC------------------------------
Confidence            56789999999999999999999999999999999999999987542110                              


Q ss_pred             hHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       130 ~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                              .....++.++|.  .++.++++++++.++++.|.+.+..++||++ +|++.|+++.+|++
T Consensus        52 --------~~~~~~v~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~  109 (111)
T cd04611          52 --------PDLQTPVGEVMS--SPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLL  109 (111)
T ss_pred             --------CCCCcCHHHhcC--CCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhh
Confidence                    001123555554  6788899999999999999999999999998 69999999999996

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.46  E-value=1.1e-12  Score=96.49  Aligned_cols=119  Identities=27%  Similarity=0.376  Sum_probs=92.1

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      +++.+++++.++.++++.|.+.++..+||+++++++|+++..++...........                       ..
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~~~~~~~~-----------------------~~   57 (122)
T cd04585           1 KNPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATTL-----------------------DI   57 (122)
T ss_pred             CCCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhhhcccccc-----------------------cc
Confidence            3577899999999999999999999999999999999999999976421110000                       00


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                      ..    ........++.++|.  +++.++++++++.+++..|.+.+.+++||++ +|.++|++|..|++
T Consensus        58 ~~----~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~  120 (122)
T cd04585          58 WE----LYYLLSKIKVSDIMT--RDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLF  120 (122)
T ss_pred             hh----hhhhhcccCHHHhcc--CCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhh
Confidence            00    000012234666775  6789999999999999999999999999999 69999999999996

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.46  E-value=9.3e-13  Score=96.65  Aligned_cols=110  Identities=20%  Similarity=0.290  Sum_probs=90.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcC-ccEEEEEeCCeeeEeeeHHHHHHHHHhcCC---CCccccccccccCCCeeeeCCCCH
Q 023512          153 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNL---PADSTLVEKVMTPNPECATIDTPI  228 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~-~~~~~V~~~~~~~Givt~~di~~~~~~~~~---~~~~~~v~~~~~~~~~~v~~~~~l  228 (281)
                      ++.++++++++.++++.|...+ ++.+||+++|++.|+++..|++. .+....   .....++.++|...+.++++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~-~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~   80 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALME-LLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL   80 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHH-HHhchhhHHHHcCCcHHHhcCCCcEEecCCCCH
Confidence            4667899999999999998776 88999998899999999999963 332210   012346889999999999999999


Q ss_pred             HHHHHHhHhCCCC---eeeEecCCCcEEEEEEhhhHHH
Q 023512          229 VDALHIMHDGKFL---HLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       229 ~~~~~~~~~~~~~---~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      .++++.|.+++..   ..||++++|+++|+||..|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             HHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            9999999998764   4468888899999999999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.45  E-value=2.6e-12  Score=92.88  Aligned_cols=105  Identities=28%  Similarity=0.408  Sum_probs=88.1

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (281)
                      +++.++++++++.++++.|.++++..+||+++ |+++|+++..+++......                            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~----------------------------   53 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARD----------------------------   53 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhC----------------------------
Confidence            57788999999999999999999999999986 8999999999997542110                            


Q ss_pred             hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                                   ..++.++|.  .++.++++++++.++++.|.+.+...+||++ +|++.|++|..|++
T Consensus        54 -------------~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~  108 (110)
T cd04605          54 -------------KKSVEDIMT--RNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDIS  108 (110)
T ss_pred             -------------ccCHHHhcC--CCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhh
Confidence                         011334443  5688899999999999999999999999998 78999999999995

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=2e-12  Score=93.65  Aligned_cols=107  Identities=21%  Similarity=0.256  Sum_probs=88.8

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      ++..+++++++.++++.|.+++++.+||+++ ++++|+++..|++......                             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~-----------------------------   52 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFE-----------------------------   52 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhc-----------------------------
Confidence            5678999999999999999999999999986 9999999999987542110                             


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~  196 (281)
                               .....++.++|.  .++.++.+++++.++++.|.+++...+||+++|+++|+||..|++
T Consensus        53 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~di~  109 (111)
T cd04626          53 ---------SFLEKKVFNIVS--QDVFYVNEEDTIDEALDIMREKQIGRLPVVDDNKLIGVVRTKDIL  109 (111)
T ss_pred             ---------ccccCcHHHHhc--CCcEEEcCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEhHHhc
Confidence                     000123445554  678899999999999999999999999999989999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=2.4e-12  Score=94.73  Aligned_cols=118  Identities=24%  Similarity=0.284  Sum_probs=91.8

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  129 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (281)
                      +++++++++++.++++.|.++++..+||+++++++|+++..++.............                        
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~~~------------------------   57 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRD------------------------   57 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcccc------------------------
Confidence            57789999999999999999999999999999999999999997643221100000                        


Q ss_pred             hHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512          130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (281)
Q Consensus       130 ~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~  196 (281)
                         ..........++.++|.  .++.++++++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus        58 ---~~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~  119 (121)
T cd04633          58 ---RHQERRIRNLPVSDIMT--RPVITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDIL  119 (121)
T ss_pred             ---hhhhhhhhccCHHHHcc--CCceEECCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhh
Confidence               00001112234556665  678899999999999999999999999999889999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=2.3e-12  Score=93.58  Aligned_cols=108  Identities=27%  Similarity=0.359  Sum_probs=88.9

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      ++.++.+++++.++++.|.+++...+||+++ ++++|+++..++.......                             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~-----------------------------   52 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES-----------------------------   52 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh-----------------------------
Confidence            4678899999999999999999999999986 8999999999997532110                             


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                              +.....++.++|.  .++.++.+++++.++++.|.+.+...+||++ +|+++|++|..|++
T Consensus        53 --------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~  111 (113)
T cd04615          53 --------EELKDAKVREVMN--SPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDIL  111 (113)
T ss_pred             --------hhhcCCcHHHhcc--CCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhh
Confidence                    0111223555665  6788999999999999999999999999998 78999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.45  E-value=1.3e-12  Score=98.30  Aligned_cols=132  Identities=21%  Similarity=0.313  Sum_probs=94.4

Q ss_pred             cCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCC
Q 023512           48 TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS  126 (281)
Q Consensus        48 ~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (281)
                      ++++.++++++++.++++.|.+++++++||+++ ++++|+++..+++............  . ......+          
T Consensus         1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~--~-~~~~~~~----------   67 (135)
T cd04586           1 TTDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRA--R-WLDLLAG----------   67 (135)
T ss_pred             CCCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhh--h-HHHHhcc----------
Confidence            357888999999999999999999999999986 8999999999997643211000000  0 0000000          


Q ss_pred             ChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512          127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (281)
Q Consensus       127 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~  196 (281)
                       ........ ......++.++|.  .++.++++++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus        68 -~~~~~~~~-~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~  133 (135)
T cd04586          68 -AEELAAAF-VRSHGRKVADVMT--RPVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLL  133 (135)
T ss_pred             -hHHHHHHH-HHhcCCCHHHHhC--CCceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhh
Confidence             00000000 0112345677775  678999999999999999999999999999999999999999986

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.45  E-value=3.2e-12  Score=92.14  Aligned_cols=104  Identities=20%  Similarity=0.264  Sum_probs=88.0

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (281)
                      +++.+++++.++.++++.|.++++..+||+++ ++++|+++..|++....                              
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~------------------------------   51 (109)
T cd04583           2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYK------------------------------   51 (109)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhh------------------------------
Confidence            46778999999999999999999999999986 89999999999865310                              


Q ss_pred             hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                                  ...++.++|.  .++..+++++++.++++.|.+.+..++||++ +|+++|++|.+|++
T Consensus        52 ------------~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~  107 (109)
T cd04583          52 ------------EAKSLEDIML--EDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLV  107 (109)
T ss_pred             ------------cCCcHhHhhc--CCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhh
Confidence                        0112445554  5688899999999999999998999999998 78999999999996

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.8e-12  Score=93.93  Aligned_cols=106  Identities=14%  Similarity=0.168  Sum_probs=88.2

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      ++.++++++++.++++.|.+.+...+||+++ ++++|+++..++.......                             
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~-----------------------------   52 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEG-----------------------------   52 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhc-----------------------------
Confidence            5678899999999999999889999999986 8999999999987542110                             


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                                ....++.++|.  .++.++++++++.++++.|.+++...+||++ +|+++|++|..|+.
T Consensus        53 ----------~~~~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~  109 (111)
T cd04639          53 ----------GPDAPVRGVMR--RDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVG  109 (111)
T ss_pred             ----------CCCCcHHHHhc--CCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhh
Confidence                      00123555554  6788999999999999999999999999999 59999999999995

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.44  E-value=3.4e-12  Score=92.28  Aligned_cols=107  Identities=20%  Similarity=0.314  Sum_probs=88.5

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      +++..+++++++.++++.|.+++++.+||+++++++|+++..++++.....                             
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~~~~~~-----------------------------   51 (110)
T cd04588           1 KPLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAIARG-----------------------------   51 (110)
T ss_pred             CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhcc-----------------------------
Confidence            367789999999999999999999999999889999999999987641100                             


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                                ....++.++|.  .++.+++++.++.++++.|.+.+...+||++ +|++.|+++..|++
T Consensus        52 ----------~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~  108 (110)
T cd04588          52 ----------LELAKVKDVMT--KDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDIL  108 (110)
T ss_pred             ----------ccccCHHHHhc--CCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhh
Confidence                      00022444444  6789999999999999999999999999999 69999999999996

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=4.5e-12  Score=93.46  Aligned_cols=118  Identities=27%  Similarity=0.302  Sum_probs=90.0

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  129 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (281)
                      ++.++++++++.+|++.|.++++..+||+++++++|+++..++..................                   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~-------------------   62 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAISPFLGTAGETEKDL-------------------   62 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHHHHHhccccchHHHH-------------------
Confidence            5778999999999999999999999999999999999999999765332111000000000                   


Q ss_pred             hHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       130 ~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                              .....++.++|.  .++.++++++++.++++.|.+++...+||++ +|+++|+++..|++
T Consensus        63 --------~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll  120 (122)
T cd04637          63 --------ATLNRRAHQIMT--RDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL  120 (122)
T ss_pred             --------HHHHhHHHHhhc--CCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhh
Confidence                    000012344454  6688999999999999999999999999998 68999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=4.5e-12  Score=93.68  Aligned_cols=116  Identities=21%  Similarity=0.158  Sum_probs=87.9

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (281)
                      ++.++++++++.+|++.|.+++++++||+++  ++++|+++..|+++.......... ...                   
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~-~~~-------------------   61 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFP-GLD-------------------   61 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhcc-chh-------------------
Confidence            5678899999999999999999999999984  799999999999865322111000 000                   


Q ss_pred             hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHH
Q 023512          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (281)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di  195 (281)
                            ...  ........+|.  .++.++++++++.++++.|.+++.+++||++ +++++|+||.+|+
T Consensus        62 ------~~~--~~~~~~~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di  120 (123)
T cd04627          62 ------PLY--PIPLRDLTIGT--SDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV  120 (123)
T ss_pred             ------hhh--hhhhhhcccCc--CCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence                  000  00001223444  6788999999999999999999999999998 7899999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=2.7e-12  Score=96.61  Aligned_cols=131  Identities=18%  Similarity=0.239  Sum_probs=93.5

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      ++.++++++++.+|++.|.+++...+||+|+ ++++|+++..+++.........   ......+....   ..       
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~---~~~~~~~~~~~---~~-------   68 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNER---GLPKKSIKMKR---KA-------   68 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhccccc---ccchhhhhhhh---hc-------
Confidence            4678899999999999999999999999986 9999999999998653211000   00000000000   00       


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~  196 (281)
                      ... ..........++.++|.  .++..+++++++.++++.|.+.+.+++||+++|+++|+||..|++
T Consensus        69 ~~~-~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~  133 (135)
T cd04621          69 GQK-RYRYVKEVPLVAEDIMT--EEIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDIC  133 (135)
T ss_pred             ccc-cccccccccccHHHhcC--CCCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHh
Confidence            000 00001123345778886  678899999999999999999999999999989999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.43  E-value=1.3e-12  Score=108.58  Aligned_cols=134  Identities=15%  Similarity=0.239  Sum_probs=110.6

Q ss_pred             EehHHH-HHHHHHhcCCCCccccccccc--CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHH
Q 023512           22 LTDKDI-ATRVIARELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAI   97 (281)
Q Consensus        22 ~t~~d~-~~~~~~~~~~~~~~~v~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~   97 (281)
                      ||.... .+++...-..-+=.+|+|+|.  ....++.+++++.+-.++-.+++++++||+|. .+++|+++.+|++..  
T Consensus       168 FTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~--  245 (432)
T COG4109         168 FTVATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK--  245 (432)
T ss_pred             eeHHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC--
Confidence            444433 334433333333458999999  57889999999999999999999999999996 899999999998642  


Q ss_pred             HHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccE
Q 023512           98 ARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS  177 (281)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~  177 (281)
                                                               ....++..+|+  +++.++.+.+|+..+.+.|...++..
T Consensus       246 -----------------------------------------~~~t~ieKVMt--knp~tv~~~tsVAsvaq~MiwE~iem  282 (432)
T COG4109         246 -----------------------------------------KPSTTIEKVMT--KNPITVRAKTSVASVAQMMIWEGIEM  282 (432)
T ss_pred             -----------------------------------------CCCccHHHHhc--cCCeeecccchHHHHHHHHHhcccee
Confidence                                                     23446788887  88999999999999999999999999


Q ss_pred             EEEEe-CCeeeEeeeHHHHHHHHH
Q 023512          178 AVVTV-ENKPRGILTSKDILMRVI  200 (281)
Q Consensus       178 ~~V~~-~~~~~Givt~~di~~~~~  200 (281)
                      +||++ +..++|+||++|+++.+-
T Consensus       283 ~PVv~~n~~llGiitR~dvlk~lq  306 (432)
T COG4109         283 LPVVDSNNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             eeEEcCCceEEEEEEHHHHHHHHH
Confidence            99999 899999999999996554

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.43  E-value=2.1e-12  Score=93.21  Aligned_cols=103  Identities=14%  Similarity=0.249  Sum_probs=87.5

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (281)
                      .++.++++++++.+|++.|.+++.+.+||+++ ++++|+++..+++...                               
T Consensus         2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-------------------------------   50 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD-------------------------------   50 (108)
T ss_pred             CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc-------------------------------
Confidence            36788999999999999999999999999985 9999999999985320                               


Q ss_pred             hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                                  ...++.++|.  .++.++++++++.++++.|.+++...+||++ +|+++|++|..|++
T Consensus        51 ------------~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~  106 (108)
T cd04596          51 ------------PDTTIEKVMT--KNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVL  106 (108)
T ss_pred             ------------ccccHHHHhc--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhh
Confidence                        0112444554  5688999999999999999999999999998 88999999999996

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.43  E-value=4.5e-12  Score=90.84  Aligned_cols=99  Identities=20%  Similarity=0.177  Sum_probs=84.8

Q ss_pred             eEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhH
Q 023512           52 TFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTF  131 (281)
Q Consensus        52 ~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (281)
                      +++++++++.++++.|.+.++..+||+++++++|+++..++....                                   
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~-----------------------------------   48 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIENAT-----------------------------------   48 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhhhc-----------------------------------
Confidence            468999999999999999999999999889999999999986420                                   


Q ss_pred             HHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512          132 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (281)
Q Consensus       132 ~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~  196 (281)
                               ..++.++|.  .++.+++++.++.++++.|.+++...+||+++|+++|++|..|++
T Consensus        49 ---------~~~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~iGvit~~dl~  102 (104)
T cd04594          49 ---------YGDVVDYIV--RGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDDGKFKGIVTLDSIL  102 (104)
T ss_pred             ---------ccchhhhhh--cCCcEEcCCCCHHHHHHHHHHcCcceEEEEECCEEEEEEEHHHhh
Confidence                     001334444  567899999999999999999999999999999999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=2.4e-12  Score=95.61  Aligned_cols=121  Identities=21%  Similarity=0.274  Sum_probs=88.2

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      .+.++++++++.+|++.|.++++..+||+++ ++++|+++..|+...............                     
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~---------------------   60 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLYRT---------------------   60 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhcccc---------------------
Confidence            5678999999999999999999999999986 899999999998764211100000000                     


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                      ..+. .+..  ......+.+.  .++.++++++++.++++.|.+++.+++||++ +++++|+||..|++
T Consensus        61 ~~~~-~~~~--~~~~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil  124 (126)
T cd04642          61 ITFK-ELSE--KFTDSDGVKS--RPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDII  124 (126)
T ss_pred             hhhh-hhhh--hccccccccc--CCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHh
Confidence            0000 0000  0011223343  6788999999999999999999999999999 68999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=1.7e-12  Score=96.13  Aligned_cols=120  Identities=28%  Similarity=0.377  Sum_probs=90.9

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCC
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS  126 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (281)
                      +++.+++++.++.+|+++|.+++...+||+++  ++++|+++..+++..............                   
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~-------------------   61 (125)
T cd04631           1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKT-------------------   61 (125)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccc-------------------
Confidence            35778999999999999999999999999985  899999999999764321100000000                   


Q ss_pred             ChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       127 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                        .     ........++.++|.  .++.++++++++.++++.|.+.+.+++||++ +|++.|+||..|++
T Consensus        62 --~-----~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~  123 (125)
T cd04631          62 --G-----NGLEAINEPVRSIMT--RNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL  123 (125)
T ss_pred             --c-----ccchhhhcCHHHHhc--CCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhh
Confidence              0     000011223555665  6799999999999999999999999999998 69999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.43  E-value=4e-12  Score=91.26  Aligned_cols=102  Identities=20%  Similarity=0.209  Sum_probs=86.2

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (281)
                      +++++++++.++.+|++.|.+++...+||+++ |+++|+++..|++....                              
T Consensus         1 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~------------------------------   50 (106)
T cd04582           1 TEPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG------------------------------   50 (106)
T ss_pred             CCCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc------------------------------
Confidence            36778999999999999999999999999984 99999999999864200                              


Q ss_pred             hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                                    .++.++|.  +++.++.+++++.++++.|.+++...+||++ +|+++|++|.++++
T Consensus        51 --------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~  104 (106)
T cd04582          51 --------------GCCGDHAE--PFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIA  104 (106)
T ss_pred             --------------cchhhhcc--cCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhh
Confidence                          01334444  5577899999999999999999999999999 78999999999996

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=3.2e-12  Score=92.68  Aligned_cols=108  Identities=21%  Similarity=0.254  Sum_probs=89.1

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (281)
                      +++.++++++++.+|.+.|.+.++..+||+++ ++++|+++..+++......                            
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~----------------------------   52 (112)
T cd04624           1 RPVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG----------------------------   52 (112)
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc----------------------------
Confidence            35778999999999999999999999999986 9999999999997642210                            


Q ss_pred             hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                                ......+.++|.  .++.++.+++++.++++.|.+++...+||++ +|++.|++|..|++
T Consensus        53 ----------~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~  110 (112)
T cd04624          53 ----------IDLDTPVSEIMT--RDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLV  110 (112)
T ss_pred             ----------CCCccCHHHhcc--CCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhc
Confidence                      001123445555  6688999999999999999988899999998 69999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.43  E-value=2.5e-12  Score=93.55  Aligned_cols=107  Identities=17%  Similarity=0.201  Sum_probs=88.2

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      ++.++++++++.++++.|.+.+...+||+++ ++++|+++..|++......                             
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~-----------------------------   53 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKG-----------------------------   53 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcC-----------------------------
Confidence            4678899999999999999999999999985 8999999999986532110                             


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                               .....++.++|.  .++.++++++++.++++.|.+.+.+.+||++ +|+++|++|.+|++
T Consensus        54 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~  111 (113)
T cd04607          54 ---------LSLDDPVSEVMN--RNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL  111 (113)
T ss_pred             ---------CCcCCCHHHhhc--CCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence                     001123555564  6688999999999999999999999999998 88999999999996

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.43  E-value=4e-12  Score=91.93  Aligned_cols=108  Identities=23%  Similarity=0.286  Sum_probs=88.9

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      +++.++++++++.++++.|.+.+++++||+++++++|+++..|++.......                            
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~----------------------------   52 (111)
T cd04612           1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVPAEGR----------------------------   52 (111)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHHhcCc----------------------------
Confidence            4678899999999999999999999999998899999999999875321100                            


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                                .....+.++|.  .++.++.+++++.++++.|.+.+.+++||++ +|++.|++|..|++
T Consensus        53 ----------~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~  109 (111)
T cd04612          53 ----------EATVLVGDVMT--RDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLL  109 (111)
T ss_pred             ----------ccccCHHHhcc--CCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhh
Confidence                      00012344454  6789999999999999999999999999999 69999999999996

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=3.5e-12  Score=91.62  Aligned_cols=103  Identities=27%  Similarity=0.387  Sum_probs=89.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHH
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (281)
                      +..++.++.++.+++..|.+.+++++||++ ++++.|+++..+++. ..      ...++.++|...+.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~-~~------~~~~~~~~~~~~~~~v~~~~~l~~~   74 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLR-NP------EEEQLALLMTRDPPTVSPDDDVKEA   74 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHh-cc------ccchHHHHhcCCCceECCCCCHHHH
Confidence            367788999999999999988889999998 689999999999962 11      1235777888889999999999999


Q ss_pred             HHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       232 ~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      ++.|.+++.+++||++ +|+++|++|..|+++
T Consensus        75 ~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~  105 (106)
T cd04638          75 AKLMVENNIRRVPVVD-DGKLVGIVTVADIVR  105 (106)
T ss_pred             HHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence            9999999999999998 589999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.43  E-value=6.2e-12  Score=91.06  Aligned_cols=108  Identities=19%  Similarity=0.209  Sum_probs=89.0

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  129 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (281)
                      +++++++++++.++++.|.+++...+||+++++++|+++..+++......                              
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~------------------------------   51 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLLD------------------------------   51 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHHcC------------------------------
Confidence            56788999999999999999999999999888999999999987532100                              


Q ss_pred             hHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512          130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (281)
Q Consensus       130 ~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~  196 (281)
                             ......++.++|.  .++..+++++++.++++.|.+++...+||+++|+++|++|..|++
T Consensus        52 -------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~  109 (111)
T cd04589          52 -------GLPSSTPVGEIAT--FPLITVDPDDFLFNALLLMTRHRIHRVVVREGGEVVGVLEQTDLL  109 (111)
T ss_pred             -------CCCCCCCHHHHhC--CCcEEECCCCcHHHHHHHHHHhCccEEEEeeCCEEEEEEEhHHhh
Confidence                   0011223555564  678899999999999999999999999999989999999999996

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.43  E-value=2.2e-12  Score=116.59  Aligned_cols=122  Identities=19%  Similarity=0.214  Sum_probs=101.6

Q ss_pred             hhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcccccccccc
Q 023512          138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (281)
Q Consensus       138 ~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~  216 (281)
                      .+...++.++|.  +++.++.+++++.++++.|.+.+.+.+||++ +++++|+||..|+++.+..... ....++.++|.
T Consensus       331 ~l~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-~~~~~v~~im~  407 (454)
T TIGR01137       331 VLKNATVKDLHL--PAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKA-NPDDAVSKVMS  407 (454)
T ss_pred             HhccCCHHHhCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCC-CcCCCHHHhcC
Confidence            456677889997  7799999999999999999988999999998 7899999999999754443222 22347889999


Q ss_pred             CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhh
Q 023512          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (281)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~  265 (281)
                      +++.++++++++.++++.|.+++   .|+|+++|+++|+||..|++++.
T Consensus       408 ~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       408 KKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             CCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence            88999999999999999998864   34455579999999999999874

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=5.6e-12  Score=91.43  Aligned_cols=110  Identities=22%  Similarity=0.298  Sum_probs=89.5

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      +++.++++++++.++++.|.+++.+.+||+++++++|+++..+++.......                            
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~----------------------------   52 (112)
T cd04802           1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRN----------------------------   52 (112)
T ss_pred             CCcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhcc----------------------------
Confidence            3567899999999999999999999999999889999999999976422100                            


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~  196 (281)
                              ......++.++|.  .++.++++++++.++++.|.+.+.+++||+++++++|+++..|++
T Consensus        53 --------~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~  110 (112)
T cd04802          53 --------LKPREVPVGEVMS--TPLITIDPNASLNEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIV  110 (112)
T ss_pred             --------CCcccCCHHHhcC--CCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCCEEEEEEEhhhhh
Confidence                    0001123455664  668899999999999999999999999999966999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.42  E-value=1.5e-12  Score=120.74  Aligned_cols=124  Identities=12%  Similarity=0.147  Sum_probs=102.2

Q ss_pred             CCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 023512           37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (281)
Q Consensus        37 ~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (281)
                      .+...+++|+|++++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+......               
T Consensus       443 ~L~~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~---------------  507 (574)
T PRK01862        443 RLRTTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR---------------  507 (574)
T ss_pred             HHhhCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc---------------
Confidence            34567999999999999999999999999999999999999986 89999999999875321100               


Q ss_pred             hHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C--CeeeEeeeH
Q 023512          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E--NKPRGILTS  192 (281)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~--~~~~Givt~  192 (281)
                                            .....++.++|.  +++.++++++++.++++.|.+++.+.+||+| +  ++++|+||+
T Consensus       508 ----------------------~~~~~~v~dim~--~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~  563 (574)
T PRK01862        508 ----------------------DTTDKTAADYAH--TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYK  563 (574)
T ss_pred             ----------------------ccccchHHHhcc--CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEH
Confidence                                  001123566665  6788999999999999999999999999998 4  489999999


Q ss_pred             HHHHHHH
Q 023512          193 KDILMRV  199 (281)
Q Consensus       193 ~di~~~~  199 (281)
                      +|+++.+
T Consensus       564 ~DIl~~l  570 (574)
T PRK01862        564 TSLLDAY  570 (574)
T ss_pred             HHHHHHH
Confidence            9998544

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=1.4e-12  Score=94.56  Aligned_cols=92  Identities=21%  Similarity=0.376  Sum_probs=77.4

Q ss_pred             CCCCccEEEEEcCCCcEEEEEehHHHHHHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeCC
Q 023512            2 AARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENG   81 (281)
Q Consensus         2 ~~~~~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~   81 (281)
                      .+++...++|.++ ++++|+++..|+++.+...+......+++++|.+++.++++++++.+|++.|.+++...+||++++
T Consensus        20 ~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~~   98 (112)
T cd04625          20 AEQDLGSLVVMER-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDGG   98 (112)
T ss_pred             HHcCCCeEEEeeC-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEECC
Confidence            3456667777764 899999999999865543333344568999999999999999999999999999999999999999


Q ss_pred             eEEEEEehHHHHH
Q 023512           82 EVIALLDIAKCLY   94 (281)
Q Consensus        82 ~~vGvi~~~dll~   94 (281)
                      +++|+++..|++.
T Consensus        99 ~~~Gvvt~~dl~~  111 (112)
T cd04625          99 TLLGVISFHDVAK  111 (112)
T ss_pred             EEEEEEEHHHhhc
Confidence            9999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.42  E-value=1.5e-11  Score=111.06  Aligned_cols=163  Identities=9%  Similarity=0.013  Sum_probs=115.6

Q ss_pred             cccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhh
Q 023512           44 SKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (281)
Q Consensus        44 ~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~----~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (281)
                      +..|.++++++++++|+.+|+++|.++++..+||+|+    ++++|+|+..|+....                       
T Consensus       103 ~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-----------------------  159 (505)
T PLN02274        103 RVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-----------------------  159 (505)
T ss_pred             cccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-----------------------
Confidence            3447789999999999999999999999999999985    6999999999984310                       


Q ss_pred             hhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHH
Q 023512          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  198 (281)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~  198 (281)
                                         ....++.++|++..++.++++++++.++++.|.+++...+||++ +++++|+||.+|+++.
T Consensus       160 -------------------~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~  220 (505)
T PLN02274        160 -------------------DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRV  220 (505)
T ss_pred             -------------------ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence                               11235778887434488999999999999999999999999998 8999999999999854


Q ss_pred             HHhcCCCCccccccccccCCC--eeeeCCCCHHHHHHHhHhCCCCeeeEecCCCc
Q 023512          199 VISQNLPADSTLVEKVMTPNP--ECATIDTPIVDALHIMHDGKFLHLPVVDRDGD  251 (281)
Q Consensus       199 ~~~~~~~~~~~~v~~~~~~~~--~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~  251 (281)
                      .......   .+..|-..+-.  ..+.....-.+-.+.+.+.+.+.+.+=-.+|.
T Consensus       221 ~~~p~~~---~~~~d~~~~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~  272 (505)
T PLN02274        221 KGYPKLG---KPSVGKDGKLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGD  272 (505)
T ss_pred             hhCcCcc---ccccCCCCCEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCC
Confidence            4332210   01111111111  11222223356666666777777644223343

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.42  E-value=5.2e-12  Score=113.87  Aligned_cols=115  Identities=12%  Similarity=0.134  Sum_probs=96.7

Q ss_pred             ccccccc---CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHH
Q 023512           42 PVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (281)
Q Consensus        42 ~v~dim~---~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~----~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~  114 (281)
                      +|+++|.   ..++++++++|+.+|++.|.++++..+||+|+    ++++|+|+..|+...                   
T Consensus        95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~-------------------  155 (502)
T PRK07107         95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS-------------------  155 (502)
T ss_pred             HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc-------------------
Confidence            4566664   34579999999999999999999999999985    799999999997421                   


Q ss_pred             hhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHH
Q 023512          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK  193 (281)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~  193 (281)
                                            ......++.++|++.+++.++++++++.+|++.|.+++...+||+| +++++|+||.+
T Consensus       156 ----------------------~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~  213 (502)
T PRK07107        156 ----------------------RMSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRK  213 (502)
T ss_pred             ----------------------ccCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhH
Confidence                                  0012345788888545789999999999999999999999999999 79999999999


Q ss_pred             HHHH
Q 023512          194 DILM  197 (281)
Q Consensus       194 di~~  197 (281)
                      |+++
T Consensus       214 Dilk  217 (502)
T PRK07107        214 DYDS  217 (502)
T ss_pred             HHHh
Confidence            9984

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.41  E-value=6.7e-12  Score=91.52  Aligned_cols=109  Identities=19%  Similarity=0.281  Sum_probs=88.7

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (281)
                      +++.++++++++.++.+.|.+.++..+||+++ ++++|+++..|+........                           
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~---------------------------   53 (115)
T cd04593           1 PPPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE---------------------------   53 (115)
T ss_pred             CCCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc---------------------------
Confidence            35678899999999999999999999999986 99999999999875421100                           


Q ss_pred             hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C--CeeeEeeeHHHHH
Q 023512          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E--NKPRGILTSKDIL  196 (281)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~--~~~~Givt~~di~  196 (281)
                                .....++.++|.  .++.++.+++++.++++.|.+++...+||++ +  |+++|+||.+|++
T Consensus        54 ----------~~~~~~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~  113 (115)
T cd04593          54 ----------AGEPSAVDEVAT--PPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVL  113 (115)
T ss_pred             ----------ccccccHHHhcc--CCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhh
Confidence                      000112444554  6788999999999999999999999999998 5  7999999999996

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=5e-12  Score=94.69  Aligned_cols=128  Identities=18%  Similarity=0.210  Sum_probs=94.4

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      ++.++++++++.++++.|.+.+++++||+++ ++++|+++..+++............               .+......
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~---------------~~~~~~~~   66 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYV---------------TLLYSVIF   66 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccc---------------cccccccc
Confidence            5678999999999999999999999999985 8999999999997653211000000               00000000


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~  196 (281)
                      ..  +...+.....++.++|.  +++..+++++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus        67 ~~--~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~  130 (132)
T cd04636          67 LD--ESKIKKLLGKKVEEIMT--KKVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDII  130 (132)
T ss_pred             cc--hHHHHHHcCCCHHHhcc--CCceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhh
Confidence            00  11222333446777776  678899999999999999999999999999989999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=6e-12  Score=91.37  Aligned_cols=110  Identities=24%  Similarity=0.295  Sum_probs=89.2

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      +++.++++++++.+|++.|.+++++.+||+++++++|+++..+++......                +            
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~----------------~------------   52 (113)
T cd04622           1 RDVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAE----------------G------------   52 (113)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhc----------------c------------
Confidence            367889999999999999999999999999999999999999986321100                0            


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                              ......++.++|.  ..+.++.+++++.++++.|...+.+++||++ +|+++|++|..|++
T Consensus        53 --------~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~  111 (113)
T cd04622          53 --------RDPDTTTVGDVMT--RGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA  111 (113)
T ss_pred             --------CCcccCCHHHhcc--CCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhh
Confidence                    0001112556665  6688899999999999999999999999998 69999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.40  E-value=9.7e-12  Score=112.29  Aligned_cols=114  Identities=10%  Similarity=0.161  Sum_probs=98.4

Q ss_pred             ccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHh
Q 023512           43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (281)
Q Consensus        43 v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~----~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (281)
                      .++.|.++++++++++++.+|+++|.+++++.+||+++    ++++|+++..|+...                       
T Consensus        98 ~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~-----------------------  154 (495)
T PTZ00314         98 FENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV-----------------------  154 (495)
T ss_pred             cccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc-----------------------
Confidence            56778889999999999999999999999999999985    699999999998521                       


Q ss_pred             hhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHH
Q 023512          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (281)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~  197 (281)
                                         .....++.++|++..++.++++++++.++++.|.+++...+||+| +++++|+||.+|+++
T Consensus       155 -------------------~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~  215 (495)
T PTZ00314        155 -------------------KDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKK  215 (495)
T ss_pred             -------------------ccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhh
Confidence                               001235778887434899999999999999999999999999999 899999999999974


Q ss_pred             H
Q 023512          198 R  198 (281)
Q Consensus       198 ~  198 (281)
                      .
T Consensus       216 ~  216 (495)
T PTZ00314        216 N  216 (495)
T ss_pred             c
Confidence            3

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=5.4e-12  Score=92.06  Aligned_cols=111  Identities=16%  Similarity=0.267  Sum_probs=86.9

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      +++++++++++.++++.|.+++++.+||+++ ++++|+++..+++.........                          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~--------------------------   55 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENL--------------------------   55 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCch--------------------------
Confidence            5678999999999999999999999999986 8999999999997643211000                          


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                       +    . ..+...++.++|.  .++.++++++++.++++.|.+.+  .+||++ +|+++|++|..|++
T Consensus        56 -~----~-~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil  114 (116)
T cd04643          56 -D----L-ERLVDLKVIDVMN--TDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREIL  114 (116)
T ss_pred             -h----H-HHHhCCcHHHHhc--CCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhh
Confidence             0    0 0011234566665  67899999999999999998754  589998 79999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=5.3e-12  Score=93.03  Aligned_cols=117  Identities=23%  Similarity=0.356  Sum_probs=90.7

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      ++.++.+++++.++++.|.+.+++.+||+++ ++++|+++..+++..........                  +      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~------------------~------   57 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDN------------------G------   57 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccc------------------c------
Confidence            5778999999999999999999999999986 99999999999976432110000                  0      


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                      ...    .+.....++.++|.  .++.++++++++.++++.|.+.+.+++||++ +|+++|++|..|++
T Consensus        58 ~~~----~~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~  120 (122)
T cd04803          58 EES----LTKERDVPVAEVMK--TDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL  120 (122)
T ss_pred             ccc----cccccCcCHHHhhC--CCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhh
Confidence            000    00112234555665  6788999999999999999999999999999 58999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.40  E-value=9.1e-12  Score=111.73  Aligned_cols=114  Identities=20%  Similarity=0.307  Sum_probs=97.2

Q ss_pred             cccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhH
Q 023512           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (281)
Q Consensus        42 ~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~----~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~  117 (281)
                      +.++.|.+++.++++++++.+++++|.+++++.+||+++    ++++|+++.+|++...                     
T Consensus        81 ~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~---------------------  139 (450)
T TIGR01302        81 RAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK---------------------  139 (450)
T ss_pred             cccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh---------------------
Confidence            456778889999999999999999999999999999985    4999999999985320                     


Q ss_pred             hhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                                           ....++.++|.+ .++.++++++++.++++.|.+++.+.+||+| +|.++|+||.+|++
T Consensus       140 ---------------------~~~~~V~dvm~~-~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl  197 (450)
T TIGR01302       140 ---------------------DKGKPVSEVMTR-EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIV  197 (450)
T ss_pred             ---------------------cCCCCHHHhhCC-CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhh
Confidence                                 011245666652 3799999999999999999999999999999 89999999999998


Q ss_pred             HH
Q 023512          197 MR  198 (281)
Q Consensus       197 ~~  198 (281)
                      +.
T Consensus       198 ~~  199 (450)
T TIGR01302       198 KR  199 (450)
T ss_pred             hc
Confidence            54

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=7.8e-12  Score=91.14  Aligned_cols=108  Identities=18%  Similarity=0.232  Sum_probs=85.5

Q ss_pred             CCeEecCCchHHHHHHHhHhCC-CcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGK-FRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~-~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      ++.+++++.++.++++.|.+++ ...+||.++++++|+++..|++.......                            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~----------------------------   53 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTAIGK----------------------------   53 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHhcCC----------------------------
Confidence            5678899999999999998888 66778878899999999999975421100                            


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCC--CcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPT--DTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~--~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                               .....++.++|.  .++.++.++  +++.++++.|.+++...+||++ +|+++|++|.+|++
T Consensus        54 ---------~~~~~~i~~~~~--~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~  113 (115)
T cd04620          54 ---------DLSDLPIGEVMT--QPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIR  113 (115)
T ss_pred             ---------CccccCHHHhcC--CCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhh
Confidence                     001123455564  567778776  7899999999999999999999 79999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.39  E-value=1e-11  Score=89.25  Aligned_cols=103  Identities=21%  Similarity=0.348  Sum_probs=87.0

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      +++++++++.++.++++.|.+.+...+||+++++++|+++..+++...                                
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~~~--------------------------------   49 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGKD--------------------------------   49 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhccC--------------------------------
Confidence            567889999999999999998888899999889999999999986310                                


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                                 ....+.++|.  .++.++.+++++.++++.|.+++..++||++ +|+++|+++..|++
T Consensus        50 -----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~  105 (107)
T cd04610          50 -----------PDETVEEIMS--KDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVI  105 (107)
T ss_pred             -----------ccccHHHhCC--CCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhh
Confidence                       0012445554  5688899999999999999999999999998 78999999999996

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.39  E-value=2e-12  Score=95.88  Aligned_cols=110  Identities=22%  Similarity=0.330  Sum_probs=88.6

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (281)
                      +++.++++++++.++++.|.++++..+||+++ ++++|+++..+++.......                           
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~---------------------------   54 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGK---------------------------   54 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhc---------------------------
Confidence            56889999999999999999999999999986 89999999999876422110                           


Q ss_pred             hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHH---------cCccEEEEEe-CCeeeEeeeHHHHHH
Q 023512          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE---------LRLSSAVVTV-ENKPRGILTSKDILM  197 (281)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~---------~~~~~~~V~~-~~~~~Givt~~di~~  197 (281)
                                .....++.++|.  .++.++.+++++.++.+.+..         .+...+||++ +|+++|+||.+|++.
T Consensus        55 ----------~~~~~~v~~im~--~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~  122 (124)
T cd04608          55 ----------VQPSDPVSKALY--KQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLS  122 (124)
T ss_pred             ----------cCCCCcHHHHhh--ccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhh
Confidence                      112335788887  789999999999999996532         2566677777 789999999999973

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=99.38  E-value=6.2e-13  Score=112.34  Aligned_cols=161  Identities=27%  Similarity=0.301  Sum_probs=123.1

Q ss_pred             HHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHH-hhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccE
Q 023512           99 RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRE-RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS  177 (281)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~  177 (281)
                      .|+..++...++.+++.+..-....++.|+.. ...++. +..   -..++   .++..++|+.++.++++....+++..
T Consensus        69 pMDTVtes~MAiaMAl~ggIg~IHhNctpe~Q-A~~v~~vK~~---~~g~~---~~p~v~sp~~tvg~v~~~k~~~gF~g  141 (503)
T KOG2550|consen   69 PMDTVTESEMAIAMALLGGIGFIHHNCTPEDQ-ADMVRRVKNY---ENGFI---NNPIVISPTTTVGEVKEAKEKHGFSG  141 (503)
T ss_pred             CCcccchhHHHHHHHhcCCceeeecCCCHHHH-HHHHHHHHHh---hcccc---cCCcccCCcccchhhhhhcccccccc
Confidence            35555666677777776655444444443322 222221 111   11122   56889999999999999999999999


Q ss_pred             EEEEe----CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEE
Q 023512          178 AVVTV----ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV  253 (281)
Q Consensus       178 ~~V~~----~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~  253 (281)
                      +|+++    .++++|+||.+|+  .++.+    ...++.++|+..+++.+.+.++.++.+++.+++...+||||++|+++
T Consensus       142 ~pvTe~g~~~~KLvG~vtsrdi--~f~~~----~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelv  215 (503)
T KOG2550|consen  142 IPVTEDGKRGSKLVGIITSRDI--QFLED----NSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELV  215 (503)
T ss_pred             cccccCCcccceeEEEEehhhh--hhhhc----ccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCcee
Confidence            99997    5789999999999  44422    24589999999999999999999999999999999999999999999


Q ss_pred             EEEEhhhHHHhhhchHHHH
Q 023512          254 DVVDVIHITHAAVATEILL  272 (281)
Q Consensus       254 Gvis~~di~~~~~~~~~~~  272 (281)
                      .+++++||.+...+++...
T Consensus       216 a~~~rtDl~k~~~yPlask  234 (503)
T KOG2550|consen  216 AMLSRTDLMKNRDYPLASK  234 (503)
T ss_pred             eeeehhhhhhhcCCCcccc
Confidence            9999999999877765443

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.38  E-value=2.3e-12  Score=93.59  Aligned_cols=93  Identities=53%  Similarity=0.763  Sum_probs=79.4

Q ss_pred             CCCCCccEEEEEcCCCcEEEEEehHHHHHHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC
Q 023512            1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN   80 (281)
Q Consensus         1 m~~~~~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~   80 (281)
                      |.+++.+.++|+++ ++++|+++..|+++.....+....+.++.++|.+++.++++++++.++++.|.+++..++||+++
T Consensus        19 ~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~   97 (113)
T cd04587          19 MREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK   97 (113)
T ss_pred             HHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC
Confidence            34567788999997 99999999999986555444333336899999999999999999999999999999999999986


Q ss_pred             -CeEEEEEehHHHHH
Q 023512           81 -GEVIALLDIAKCLY   94 (281)
Q Consensus        81 -~~~vGvi~~~dll~   94 (281)
                       ++++|+++..|++.
T Consensus        98 ~~~~~Gvvs~~dl~~  112 (113)
T cd04587          98 SGQVVGLLDVTKLTH  112 (113)
T ss_pred             CCCEEEEEEHHHhcc
Confidence             99999999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=6.9e-12  Score=92.38  Aligned_cols=118  Identities=23%  Similarity=0.396  Sum_probs=90.2

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (281)
                      +++.++++++++.++++.|.+++++.+||+++ ++++|+++..+++..........                        
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~------------------------   56 (122)
T cd04635           1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVE------------------------   56 (122)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhcccccccc------------------------
Confidence            35788999999999999999999999999986 99999999999875311000000                        


Q ss_pred             hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                       ...   ........++.++|.  .++.++++++++.++++.|.+.+.+++||++ +|++.|++|..|++
T Consensus        57 -~~~---~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~  120 (122)
T cd04635          57 -DQQ---RTQTKASPTVEKIMS--TPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVL  120 (122)
T ss_pred             -chh---hhhhhccCcHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhh
Confidence             000   000011223555564  6789999999999999999999999999998 78999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=1.7e-11  Score=91.25  Aligned_cols=121  Identities=29%  Similarity=0.364  Sum_probs=90.1

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      ++.++.+++++.+|+++|.+.+.+.+||+++ ++++|+++..++...........  ...                    
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~--~~~--------------------   59 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKA--RTG--------------------   59 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhc--chh--------------------
Confidence            5678899999999999999999999999986 89999999999975432110000  000                    


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe---CCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~di~  196 (281)
                       .... ........++.++|.  .++++++++.++.++++.|.+.+...+||++   +|+++|+||..|++
T Consensus        60 -~~~~-~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~  126 (128)
T cd04632          60 -DRSG-EKERMLDLPVYDAMS--SPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVL  126 (128)
T ss_pred             -hhhh-hhhhhccCcHHHHhc--CCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhh
Confidence             0000 000112234666775  6789999999999999999998889999985   48999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.37  E-value=1.4e-11  Score=89.21  Aligned_cols=105  Identities=16%  Similarity=0.204  Sum_probs=85.8

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d-~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (281)
                      ++.++++++++.+|.+.|.+.++..+||++ + ++++|+++..+++.......                           
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~---------------------------   54 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE---------------------------   54 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC---------------------------
Confidence            567899999999999999999999999997 4 89999999999976421100                           


Q ss_pred             hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                                  ....+.+++   .++.++.+++++.++++.|.+++.+++||++ +|+++|++|..|++
T Consensus        55 ------------~~~~~~~~~---~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~  109 (111)
T cd04590          55 ------------EDLDLRDLL---RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDIL  109 (111)
T ss_pred             ------------CcCCHHHHh---cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhh
Confidence                        001122333   4578899999999999999999999999999 69999999999996

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.37  E-value=1.2e-11  Score=90.20  Aligned_cols=104  Identities=15%  Similarity=0.254  Sum_probs=84.1

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCC
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS  124 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~----~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (281)
                      .++.++.+++++.++++.|.+++...+||+|+    ++++|+++..|++...                            
T Consensus         2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~----------------------------   53 (114)
T cd04602           2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT----------------------------   53 (114)
T ss_pred             CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh----------------------------
Confidence            35678899999999999999999999999984    8999999999875320                            


Q ss_pred             CCChhhHHHHHHHhhcCCCccccccCCCceeEe--CCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          125 ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTI--SPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v--~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                                    ....++.++|.  .++..+  ++++++.++++.|.+++...+||++ +|+++|+||.+|++
T Consensus        54 --------------~~~~~v~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~  112 (114)
T cd04602          54 --------------DSETPLSEVMT--PREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK  112 (114)
T ss_pred             --------------ccCCCHHHhcC--CCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhh
Confidence                          00112455665  445555  4499999999999999999999998 79999999999996

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.37  E-value=1.1e-11  Score=89.01  Aligned_cols=97  Identities=18%  Similarity=0.222  Sum_probs=84.8

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCC
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSI  125 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~----~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (281)
                      ...++.+++++.++.+.|.+.++..+||+++    ++++|+++..++......                           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------------------   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------------------   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------------
Confidence            4567899999999999999999999999986    899999999998654110                           


Q ss_pred             CChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512          126 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (281)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~  196 (281)
                                           +|.  .++.++++++++.++++.|.+++.+++||+++|+++|++|.+|++
T Consensus        56 ---------------------~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~  103 (105)
T cd04591          56 ---------------------YID--PSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDEGRLVGIITRKDLL  103 (105)
T ss_pred             ---------------------hcc--CCCceECCCCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEhhhhh
Confidence                                 333  568899999999999999999999999999999999999999996

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.37  E-value=1.7e-11  Score=90.05  Aligned_cols=117  Identities=26%  Similarity=0.371  Sum_probs=90.2

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      ++.++++++++.+|++.|.+.+++.+||+++ ++++|+++..++............     .                  
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~-----~------------------   58 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLS-----E------------------   58 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccch-----h------------------
Confidence            5778999999999999999999999999986 999999999998653211100000     0                  


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~  196 (281)
                          ... ......++.++|.  .++.++++++++.++++.|.+.+..++||+++|+++|+++..|++
T Consensus        59 ----~~~-~~~~~~~v~~~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~  119 (121)
T cd04584          59 ----HEL-YLLLKMPVKEIMT--KDVITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLL  119 (121)
T ss_pred             ----hhh-hhhcCcCHHHHhh--CCCeEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhh
Confidence                000 0112234556665  568899999999999999999999999999889999999999996

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.37  E-value=1e-11  Score=110.98  Aligned_cols=125  Identities=21%  Similarity=0.214  Sum_probs=108.1

Q ss_pred             hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe--CCeeeEeeeHHHHHHHHHhcCCCCcccccccccc
Q 023512          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (281)
Q Consensus       139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~  216 (281)
                      +...++.++|+|..++.+++.+.++.++.+.+.+++++++||++  .+.++|++..+|++..........   ...... 
T Consensus       203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~---~~~~~~-  278 (429)
T COG1253         203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDL---DLRVLV-  278 (429)
T ss_pred             cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcccc---chhhcc-
Confidence            46788999999999999999999999999999999999999999  678999999999996665543211   112222 


Q ss_pred             CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      ++++.++++.++.++++.|.+.+.+...|+||.|...|+||..||+.....
T Consensus       279 ~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvG  329 (429)
T COG1253         279 RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVG  329 (429)
T ss_pred             cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhC
Confidence            389999999999999999999999999999999999999999999998554

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=6.4e-12  Score=93.32  Aligned_cols=114  Identities=22%  Similarity=0.268  Sum_probs=84.3

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      ++.++.+++++.+|++.|.+++.+.+||+++ ++++|+++..|+..........  .          +            
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~--~----------~------------   57 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQ--E----------G------------   57 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHH--H----------c------------
Confidence            4678999999999999999999999999985 8999999999987521110000  0          0            


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCcee--Ee----CCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVV--TI----SPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~--~v----~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~  196 (281)
                             .......++.++|.  +++.  .+    .+++++.++++.|.+++.+.+||++ + |.++|+||.+|++
T Consensus        58 -------~~~~~~~~v~~im~--~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~  124 (126)
T cd04640          58 -------GISRSELTVADVMT--PKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIA  124 (126)
T ss_pred             -------CCCchheEHHHhcC--chhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHh
Confidence                   00001123555664  3332  23    3688999999999999999999999 5 7999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.36  E-value=4.9e-12  Score=91.85  Aligned_cols=93  Identities=24%  Similarity=0.421  Sum_probs=79.9

Q ss_pred             CCCCCccEEEEEcCCCcEEEEEehHHHHHHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC
Q 023512            1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN   80 (281)
Q Consensus         1 m~~~~~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~   80 (281)
                      |.++++..+||++++++++|+++..|+.+ ...+.......++.++|.+++.++++++++.++++.|.+.+...+||+++
T Consensus        19 ~~~~~~~~~~v~~~~~~~~G~v~~~~l~~-~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~   97 (114)
T cd04613          19 IAHSPENNFPVVDDDGRLVGIVSLDDIRE-ILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDD   97 (114)
T ss_pred             HHhCCCcceeEECCCCCEEEEEEHHHHHH-HHhcccccccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeC
Confidence            34567889999998889999999999974 33444334347899999999999999999999999999999999999986


Q ss_pred             --CeEEEEEehHHHHH
Q 023512           81 --GEVIALLDIAKCLY   94 (281)
Q Consensus        81 --~~~vGvi~~~dll~   94 (281)
                        ++++|+++..|++.
T Consensus        98 ~~~~~~Gvvt~~di~~  113 (114)
T cd04613          98 DPGKLLGILSRSDLLS  113 (114)
T ss_pred             CCCEEEEEEEhHHhhc
Confidence              89999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=2e-11  Score=92.86  Aligned_cols=137  Identities=18%  Similarity=0.242  Sum_probs=93.4

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHH-HHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME-RAAEKGKAIAAAVEGVEKHWGTSISG  127 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (281)
                      ++++++++++++.++++.|.++++..+||+++++++|+++..+++........ ..........        ........
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~   72 (143)
T cd04634           1 KNPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLPSPLE--------LIELPLRE   72 (143)
T ss_pred             CCcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHHhccCccccccCCcce--------eeeccchh
Confidence            35778999999999999999999999999988999999999998764322110 0000000000        00000000


Q ss_pred             h---hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512          128 P---NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (281)
Q Consensus       128 ~---~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~  196 (281)
                      .   ..+..... .....++.++|.  .++.++++++++.+++..|.+.+.+.+||+++|+++|+++..|++
T Consensus        73 ~~~~~~~~~~~~-~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~  141 (143)
T cd04634          73 FINWEETKRALT-DAGKMKVRDIMT--KKVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDII  141 (143)
T ss_pred             eeehHHHHHHHH-HHhcCCHHHHcC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence            0   00000011 112334666775  678999999999999999999999999999888999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.35  E-value=1e-11  Score=89.62  Aligned_cols=104  Identities=23%  Similarity=0.359  Sum_probs=84.7

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (281)
                      +++.++++++++.++++.|.++++..+||+++ |+++|+++..++....                               
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-------------------------------   50 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET-------------------------------   50 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc-------------------------------
Confidence            46778999999999999999999999999986 8999999999875310                               


Q ss_pred             hhhHHHHHHHhhcCCCccccccCCCceeEeCC-CCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISP-TDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~-~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                                 ....++.++|.  .++..+.+ ++++.++++.|.+.+.+.+||++ +|+++|++|.+|++
T Consensus        51 -----------~~~~~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil  108 (110)
T cd04601          51 -----------DLDKPVSEVMT--PENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIE  108 (110)
T ss_pred             -----------cCCCCHHHhcc--cCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhh
Confidence                       00113445554  44555565 99999999999999999999998 79999999999996

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.35  E-value=3.8e-11  Score=87.63  Aligned_cols=111  Identities=26%  Similarity=0.361  Sum_probs=94.1

Q ss_pred             ccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCC
Q 023512           45 KVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS  124 (281)
Q Consensus        45 dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (281)
                      ++|.+.+.++.++.++.+|...|.++++..+||+++++++|+++..|++.........                      
T Consensus         3 ~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~~~~~----------------------   60 (117)
T COG0517           3 DIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGGKR----------------------   60 (117)
T ss_pred             ccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhccCCc----------------------
Confidence            4455899999999999999999999999999999988999999999998763321100                      


Q ss_pred             CCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHH-cCccEEEEEe-CC-eeeEeeeHHHH
Q 023512          125 ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE-LRLSSAVVTV-EN-KPRGILTSKDI  195 (281)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~-~~~~~~~V~~-~~-~~~Givt~~di  195 (281)
                                      ..++.++|.  .++.++.++.++.++.+.|.+ ++.+.+||++ ++ +++|++|..|+
T Consensus        61 ----------------~~~v~~v~~--~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di  116 (117)
T COG0517          61 ----------------LLPVKEVMT--KPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI  116 (117)
T ss_pred             ----------------cccHHHhcc--CCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence                            004666775  579999999999999999999 6999999999 54 99999999997

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.33  E-value=8.2e-12  Score=105.12  Aligned_cols=111  Identities=15%  Similarity=0.189  Sum_probs=93.8

Q ss_pred             ccccccccCC-CeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHh
Q 023512           41 TPVSKVMTRN-PTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (281)
Q Consensus        41 ~~v~dim~~~-~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (281)
                      .+++++|.++ +.++++++++.++++.|.+.++..+||+|+ ++++|+++..|+......                    
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~--------------------  214 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG--------------------  214 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc--------------------
Confidence            5789999988 999999999999999999999999999985 899999999998753110                    


Q ss_pred             hhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeee
Q 023512          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILT  191 (281)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt  191 (281)
                                        ......++.++|.  +++.++++++++.++++.|.+.+..++||++ +|+++|+|+
T Consensus       215 ------------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       215 ------------------GGSLKSEVRDFMT--LGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             ------------------CCcccCcHHHhCC--CCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence                              0011234667776  6788999999999999999999999999999 789999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.33  E-value=1.2e-11  Score=89.24  Aligned_cols=99  Identities=21%  Similarity=0.288  Sum_probs=81.2

Q ss_pred             ecCCchHHHHHHHhHhCC-----CcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512           54 VLSDTLAVEALQKMVQGK-----FRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (281)
Q Consensus        54 v~~~~~l~~a~~~m~~~~-----~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (281)
                      +++++++.++++.|.+++     +..+||+++ ++++|+++..+++...                               
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~-------------------------------   50 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD-------------------------------   50 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC-------------------------------
Confidence            578999999999998877     478999985 8999999998885310                               


Q ss_pred             hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHH
Q 023512          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (281)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~  197 (281)
                                  ...++.++|.  .++..+.+++++.++++.|...+...+||++ +|+++|++|..|+++
T Consensus        51 ------------~~~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~  107 (109)
T cd04606          51 ------------PDTPVSDIMD--TDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVID  107 (109)
T ss_pred             ------------CcchHHHHhC--CCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhh
Confidence                        0012334443  5688999999999999999999999999998 899999999999973

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.33  E-value=6.4e-11  Score=103.39  Aligned_cols=199  Identities=22%  Similarity=0.243  Sum_probs=145.2

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEee--CCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCC
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS  126 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d--~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (281)
                      .....++...++.+|+..+..++++..|+++  .++++|+++..|++........... ....+ .....          
T Consensus        76 ~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~-~~~~~-~~~~~----------  143 (381)
T KOG1764|consen   76 SKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKS-SLDNI-EVLED----------  143 (381)
T ss_pred             ceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCC-cHHHH-hhhhh----------
Confidence            4678899999999999999999999999998  3899999999999887655433200 00000 00000          


Q ss_pred             ChhhHHHHHHHhhcCCCc--cccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe--CCeeeEeeeHHHHHHHHHhc
Q 023512          127 GPNTFIETLRERMFRPSL--STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQ  202 (281)
Q Consensus       127 ~~~~~~~~~~~~~~~~~v--~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~di~~~~~~~  202 (281)
                               .+......+  ..-....+++..+.+..++.++...+.+.+++++||.|  .+.+..++|.+-++..+...
T Consensus       144 ---------~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~  214 (381)
T KOG1764|consen  144 ---------SQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLN  214 (381)
T ss_pred             ---------hhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHh
Confidence                     000000111  00111114448899999999999999999999999998  78999999999999655543


Q ss_pred             CCCC-----ccccccccc--c-CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          203 NLPA-----DSTLVEKVM--T-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       203 ~~~~-----~~~~v~~~~--~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      ....     ...++.++.  . .+...+.+++++.+|+++|...++..+|||+++|+.+|+++..|+......+
T Consensus       215 ~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~  288 (381)
T KOG1764|consen  215 GRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREG  288 (381)
T ss_pred             hcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcC
Confidence            3222     122333322  1 3578899999999999999999999999999999999999999999886544

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.33  E-value=7.9e-12  Score=115.43  Aligned_cols=133  Identities=16%  Similarity=0.146  Sum_probs=98.6

Q ss_pred             HHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhc-------
Q 023512          131 FIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-------  202 (281)
Q Consensus       131 ~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~-------  202 (281)
                      ..+.........++.++|+. +++.++++++++.++.+.|.+++++.+||+| +|+++|++|..|++.....+       
T Consensus       235 t~~t~~~l~~~~~V~~iM~~-~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~  313 (546)
T PRK14869        235 TFTTARLINQSIPVSYIMTT-EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHN  313 (546)
T ss_pred             HHHHHHHhhcCCCHHHhccC-CCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCc
Confidence            33334444456678999962 5799999999999999999999999999999 89999999999998422110       


Q ss_pred             -------CCCCc-------cccccccccCCCeee---eCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhh
Q 023512          203 -------NLPAD-------STLVEKVMTPNPECA---TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (281)
Q Consensus       203 -------~~~~~-------~~~v~~~~~~~~~~v---~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~  265 (281)
                             .....       .-++.++++..|+.+   +...+...+.+.|.+.+....|++. ..-+.||++.++.++..
T Consensus       314 e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT~~f~~~  392 (546)
T PRK14869        314 EKSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDTLLFKSP  392 (546)
T ss_pred             cccccccchhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhcCccCC
Confidence                   00000       013455666666554   4477778899999999998888875 56799999999988763

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.33  E-value=2.4e-11  Score=109.91  Aligned_cols=119  Identities=24%  Similarity=0.339  Sum_probs=96.7

Q ss_pred             CCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 023512           38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (281)
Q Consensus        38 ~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (281)
                      +.+.+++++|.+++.++.+++++.++++.|.+++++.+||+|+ ++++|+|+..|++......                 
T Consensus       332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-----------------  394 (454)
T TIGR01137       332 LKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAG-----------------  394 (454)
T ss_pred             hccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhcc-----------------
Confidence            5677899999999999999999999999999999999999986 8999999999987642110                 


Q ss_pred             HhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (281)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~  196 (281)
                                          ......++.++|.  .++.++++++++.++++.|.+++  ..+|.++++++|+||.+|++
T Consensus       395 --------------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~~~~~~--~~vV~~~g~liGvvt~~dll  450 (454)
T TIGR01137       395 --------------------KANPDDAVSKVMS--KKFIQIGEGEKLSDLSKFLEKNS--SAIVTEEGKPIGVVTKIDLL  450 (454)
T ss_pred             --------------------CCCcCCCHHHhcC--CCCeEECCcCcHHHHHHHHHHCC--eeEEEECCEEEEEEEHHHHH
Confidence                                0011124666775  67889999999999999998754  35565689999999999998


Q ss_pred             H
Q 023512          197 M  197 (281)
Q Consensus       197 ~  197 (281)
                      .
T Consensus       451 ~  451 (454)
T TIGR01137       451 S  451 (454)
T ss_pred             H
Confidence            4

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.32  E-value=1.3e-11  Score=89.72  Aligned_cols=91  Identities=36%  Similarity=0.571  Sum_probs=78.8

Q ss_pred             CCCccEEEEEcCCCcEEEEEehHHHHHHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEee-CC
Q 023512            3 ARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NG   81 (281)
Q Consensus         3 ~~~~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d-~~   81 (281)
                      +++...++|.+++++++|+++..++++ .+.........++.++|.+++.++++++++.++++.|.+++...+||++ ++
T Consensus        22 ~~~~~~~~v~d~~~~~~G~v~~~~i~~-~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~  100 (114)
T cd04604          22 RKGLGMTAVVDEDGRLVGIFTDGDLRR-ALEKGLDILTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNG  100 (114)
T ss_pred             hcCccEEEEEcCCCCEEEEechHHHHH-HHhccCccccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCC
Confidence            456778999998889999999999974 4444445555689999999999999999999999999999999999998 59


Q ss_pred             eEEEEEehHHHHH
Q 023512           82 EVIALLDIAKCLY   94 (281)
Q Consensus        82 ~~vGvi~~~dll~   94 (281)
                      +++|+++..|++.
T Consensus       101 ~~iG~it~~di~~  113 (114)
T cd04604         101 RPVGVLHIHDLLR  113 (114)
T ss_pred             CEEEEEEHHHhhc
Confidence            9999999999864

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.32  E-value=3e-11  Score=90.65  Aligned_cols=98  Identities=30%  Similarity=0.297  Sum_probs=78.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcc----------ccccccc------
Q 023512          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS----------TLVEKVM------  215 (281)
Q Consensus       153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~----------~~v~~~~------  215 (281)
                      ++.++++++++.++++.|...+.+++||+| +|+++|++|..|+++.+.........          ..+.++|      
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~   81 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY   81 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhh
Confidence            478899999999999999988999999999 79999999999998655433221100          0123344      


Q ss_pred             ---cCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCC
Q 023512          216 ---TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG  250 (281)
Q Consensus       216 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~  250 (281)
                         ..+++++.+++++.+|++.|.+++.+++||+++++
T Consensus        82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~  119 (133)
T cd04592          82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV  119 (133)
T ss_pred             cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence               46688999999999999999999999999998553

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.30  E-value=9.4e-12  Score=104.48  Aligned_cols=126  Identities=20%  Similarity=0.240  Sum_probs=108.1

Q ss_pred             hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe--CCeeeEeeeHHHHHHHHHhcCCCCcccccccccc
Q 023512          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (281)
Q Consensus       139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~  216 (281)
                      +..-+|+|+|.|.++...++.+++.+++++.+....+.++|+..  -+.++|++..+|+++.+..... .   ...+++.
T Consensus       197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-~---~k~d~~~  272 (423)
T COG4536         197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-F---TKEDILR  272 (423)
T ss_pred             cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-c---cHhHHHH
Confidence            34567999999999999999999999999999999999999997  3459999999999855544432 2   3344443


Q ss_pred             --CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          217 --PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       217 --~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                        ..|++++.++++.+.+..|.+++.+...||||.|.+.|++|..||+..+--.
T Consensus       273 ~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGd  326 (423)
T COG4536         273 AADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGD  326 (423)
T ss_pred             HhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhcc
Confidence              6899999999999999999999999999999999999999999999886544

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.29  E-value=8.9e-11  Score=86.00  Aligned_cols=111  Identities=16%  Similarity=0.195  Sum_probs=85.9

Q ss_pred             CCeEecCCchHHHHHHHhHhCC-CcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGK-FRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~-~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      ++.++++++++.++++.|...+ +..+||+++++++|+++..+++........                           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~~~~~~---------------------------   54 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELLSTPYG---------------------------   54 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHHhchhh---------------------------
Confidence            5667899999999999998877 889999988999999999998754221000                           


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCcc---EEEEEe-CCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLS---SAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~---~~~V~~-~~~~~Givt~~di~  196 (281)
                             .......++.++|.  .++.++++++++.+++..|.+.+..   ..+|++ +|+++|+||..|++
T Consensus        55 -------~~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~  117 (119)
T cd04598          55 -------RALYGKKPVSEVMD--PDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLL  117 (119)
T ss_pred             -------HHHHcCCcHHHhcC--CCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHh
Confidence                   00112234667775  6789999999999999999887643   335665 89999999999996

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.29  E-value=7.3e-11  Score=85.05  Aligned_cols=106  Identities=24%  Similarity=0.314  Sum_probs=83.3

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  129 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (281)
                      ++.++++++++.++.+.|.+++++.+||+++++++|+++..++.+.......                            
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~----------------------------   53 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEGKA----------------------------   53 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhcccc----------------------------
Confidence            4678899999999999999999999999988999999999998764221100                            


Q ss_pred             hHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       130 ~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                               ....++.++|.  +++.++++++++.++++.|.+ ... +||++ +|+++|++|.+|++
T Consensus        54 ---------~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~-~~~-~~vv~~~~~~~Gvvt~~di~  108 (110)
T cd04609          54 ---------KFSLPVREVMG--EPLPTVDPDAPIEELSELLDR-GNV-AVVVDEGGKFVGIITRADLL  108 (110)
T ss_pred             ---------ccCcCHHHHhc--CCCceeCCCCcHHHHHHHHHh-CCc-eeEEecCCeEEEEEeHHHhh
Confidence                     00122444554  568889999999999999988 333 67776 79999999999996

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=8.8e-11  Score=84.27  Aligned_cols=102  Identities=26%  Similarity=0.353  Sum_probs=84.8

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      ++.++.+++++.+++..|.+.++..+||+++ ++++|+++..+++...                                
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~--------------------------------   49 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP--------------------------------   49 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc--------------------------------
Confidence            4678899999999999999989999999986 8999999999986310                                


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~  196 (281)
                                 ....+.++|.  .++.++++++++.+++..|.+.+...+||+++|+++|++|..|++
T Consensus        50 -----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~~~~G~it~~d~~  104 (106)
T cd04638          50 -----------EEEQLALLMT--RDPPTVSPDDDVKEAAKLMVENNIRRVPVVDDGKLVGIVTVADIV  104 (106)
T ss_pred             -----------ccchHHHHhc--CCCceECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence                       0001233343  568889999999999999999999999999988999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=1.3e-10  Score=83.66  Aligned_cols=108  Identities=27%  Similarity=0.339  Sum_probs=87.4

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCCh
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (281)
                      ++.++++++++.++++.|.+++...+||+++ ++++|+++..+++.........                          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~--------------------------   55 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLD--------------------------   55 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCC--------------------------
Confidence            5678899999999999999999999999986 8999999999997653211000                          


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                                 ....+.++|.  .++..+.+++++.+++..|.+.+.+.+||++ ++++.|+++..|++
T Consensus        56 -----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~  111 (113)
T cd02205          56 -----------PLVTVGDVMT--RDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL  111 (113)
T ss_pred             -----------ccccHHHHhc--CCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhh
Confidence                       0000233443  6688899999999999999999999999999 79999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.19  E-value=1.4e-10  Score=102.53  Aligned_cols=119  Identities=18%  Similarity=0.269  Sum_probs=104.8

Q ss_pred             cCCCccccccCCCceeEeCCCCcHHHHHHHHHHc-----CccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccc
Q 023512          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK  213 (281)
Q Consensus       140 ~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~  213 (281)
                      ...+...+|+  ..++++.++.|+.+++..+++.     ....+.|+| ++++.|+++.++++       ....+.++++
T Consensus       130 ~e~taG~~Mt--~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll-------~a~~~~~i~~  200 (451)
T COG2239         130 PEDTAGRIMT--TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL-------TAEPDELLKD  200 (451)
T ss_pred             Chhhhhccce--eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHh-------cCCcHhHHHH
Confidence            3456788898  8899999999999999999853     478889999 88899999999997       2223558999


Q ss_pred             cccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       214 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      +|.+.++++.+++..+++.+.+.+++.-.+||||++++++|+||..|++.....
T Consensus       201 im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e  254 (451)
T COG2239         201 LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE  254 (451)
T ss_pred             HhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999987543

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.18  E-value=7.2e-11  Score=74.79  Aligned_cols=56  Identities=34%  Similarity=0.571  Sum_probs=52.5

Q ss_pred             ccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512          211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (281)
Q Consensus       211 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~  266 (281)
                      ++++|+++++++++++++.++++.|.+++.+++||+|++|+++|+||.+||+++..
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            46789999999999999999999999999999999999999999999999998753

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.15  E-value=1.4e-10  Score=73.40  Aligned_cols=54  Identities=30%  Similarity=0.445  Sum_probs=50.8

Q ss_pred             ccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHH
Q 023512           43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDA   96 (281)
Q Consensus        43 v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~   96 (281)
                      |+++|.++++++++++++.++++.|.+++++.+||+|+ ++++|+++.+|++++.
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence            57899999999999999999999999999999999975 9999999999998864

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.12  E-value=6.6e-10  Score=83.30  Aligned_cols=115  Identities=15%  Similarity=0.004  Sum_probs=77.2

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCC
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (281)
                      +.+.++.+++++.+|++.|.++++..+||+|+ ++++|+++..|++.+...............          +      
T Consensus         1 ~~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~----------~------   64 (133)
T cd04592           1 TKYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDET----------K------   64 (133)
T ss_pred             CCceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhh----------c------
Confidence            35788999999999999999999999999986 999999999999876422100000000000          0      


Q ss_pred             hhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe
Q 023512          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV  182 (281)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~  182 (281)
                       ........+.+....+.+.|.  .++.++.+++++.+|++.|.+++.+++||++
T Consensus        65 -~~~~~~v~~i~~~~~~~~~~~--~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd  116 (133)
T cd04592          65 -QTNTCLVSSVCTKGISYGGQE--CGLWTCTPDTDLTTAKKLMEAKGVKQLPVVK  116 (133)
T ss_pred             -ccccccHHHHhhhhhhhcccC--CCCEEECCCCCHHHHHHHHHHcCCCcCCEec
Confidence             000000001111111222333  5688999999999999999999999999998

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.09  E-value=5e-10  Score=88.42  Aligned_cols=158  Identities=15%  Similarity=0.134  Sum_probs=120.9

Q ss_pred             cCCCCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhhhhH
Q 023512           35 ELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAI  110 (281)
Q Consensus        35 ~~~~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~~~~~~  110 (281)
                      ...+.+.+|.|+|.+  +.++++.+.++.+.+..+.+..++++||+.+  +.+.|++-.+|++.+.....          
T Consensus        61 vm~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~----------  130 (293)
T COG4535          61 VMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDA----------  130 (293)
T ss_pred             HHHHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCc----------
Confidence            346778899999985  7799999999999999999999999999963  88999999999987632210          


Q ss_pred             HHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEe
Q 023512          111 AAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGI  189 (281)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gi  189 (281)
                                                   ....+.++.   +|.++++++..+...++.|+..+.+..+|+| .|-+.|+
T Consensus       131 -----------------------------~~F~i~~lL---RPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGL  178 (293)
T COG4535         131 -----------------------------EPFDIKELL---RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGL  178 (293)
T ss_pred             -----------------------------ccccHHHhc---ccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeee
Confidence                                         001122222   7799999999999999999999888999999 7889999


Q ss_pred             eeHHHHHHHHHhcCCCCcc----ccccccccCCCeeeeCCCCHHHHHHHh
Q 023512          190 LTSKDILMRVISQNLPADS----TLVEKVMTPNPECATIDTPIVDALHIM  235 (281)
Q Consensus       190 vt~~di~~~~~~~~~~~~~----~~v~~~~~~~~~~v~~~~~l~~~~~~~  235 (281)
                      ||..|++..+.+.-.+..+    ..+..+ .+.-+.+..-+++++..+.|
T Consensus       179 VTIEDiLEqIVGdIEDE~Deee~~dI~~l-s~~~~~VrALT~IedFNe~F  227 (293)
T COG4535         179 VTIEDILEQIVGDIEDEYDEEEDADIRQL-SRHTWRVRALTEIEDFNEAF  227 (293)
T ss_pred             EEHHHHHHHHhcccccccchhhhhhhHhh-cCCceEEEecccHHHHHHHh
Confidence            9999999888765443221    112221 35567777777777766665

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.02  E-value=2.1e-08  Score=87.45  Aligned_cols=107  Identities=19%  Similarity=0.197  Sum_probs=90.9

Q ss_pred             eeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHH
Q 023512          154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (281)
Q Consensus       154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (281)
                      .....++.+..++++.|...+...+.|++ ++++.|.++..++. ......     ..+.+.+.....++++++++.+++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  325 (363)
T TIGR01186       252 PITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIK-QARKKA-----QGLQDVLIDDIYTVDAGTLLRETV  325 (363)
T ss_pred             ceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHH-HHhhcC-----CchhhhhccCCceECCCCcHHHHH
Confidence            34566777899999999988888888888 89999999999985 444332     146667777788999999999999


Q ss_pred             HHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       233 ~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      ..|.+++.. +||+|++|+++|+||..+++++...
T Consensus       326 ~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       326 RKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             HHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence            999999998 9999999999999999999988654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.01  E-value=2.4e-09  Score=94.80  Aligned_cols=120  Identities=21%  Similarity=0.277  Sum_probs=103.0

Q ss_pred             HhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhC-----CCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHh
Q 023512           33 ARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEK  106 (281)
Q Consensus        33 ~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~-----~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~  106 (281)
                      ....++.+-++..+|+++.+.++++.|+.+++..+.+.     .++.+.|+|+ ++++|+++.++++...          
T Consensus       124 ~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~----------  193 (451)
T COG2239         124 RQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAE----------  193 (451)
T ss_pred             HHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCC----------
Confidence            34557778899999999999999999999999999953     4678899996 8899999999997531          


Q ss_pred             hhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCe
Q 023512          107 GKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENK  185 (281)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~  185 (281)
                                                       ....+.++|.  +++..+.+.+..+++.+.|.+++.-.+||+| +++
T Consensus       194 ---------------------------------~~~~i~~im~--~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~  238 (451)
T COG2239         194 ---------------------------------PDELLKDLME--DDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNR  238 (451)
T ss_pred             ---------------------------------cHhHHHHHhc--ccceeecccCCHHHHHHHHHHhCCeecceECCCCc
Confidence                                             1113566676  6699999999999999999999999999999 889


Q ss_pred             eeEeeeHHHHHH
Q 023512          186 PRGILTSKDILM  197 (281)
Q Consensus       186 ~~Givt~~di~~  197 (281)
                      ++|++|..|++.
T Consensus       239 LiG~itiDDiid  250 (451)
T COG2239         239 LIGIITIDDIID  250 (451)
T ss_pred             eeeeeeHHHHHH
Confidence            999999999984

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.99  E-value=9.5e-10  Score=86.88  Aligned_cols=123  Identities=17%  Similarity=0.197  Sum_probs=106.5

Q ss_pred             cCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe--CCeeeEeeeHHHHHHHHHhcCCCCccccccccccC
Q 023512          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP  217 (281)
Q Consensus       140 ~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~  217 (281)
                      ....+.++|.|.....++..+.++.+.+..+.+..++++||..  .+.+.|++-.+|++ +++.....  ...+.++. +
T Consensus        65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL-~~~~~~~~--~F~i~~lL-R  140 (293)
T COG4535          65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLL-PFMRSDAE--PFDIKELL-R  140 (293)
T ss_pred             HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHH-HHhcCCcc--cccHHHhc-c
Confidence            4556899999888999999999999999999999999999998  67799999999999 44433322  12466665 6


Q ss_pred             CCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512          218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (281)
Q Consensus       218 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~  266 (281)
                      +.+.++++-.+...++-|...+.+...|+||-|-+-|.||..|++..+-
T Consensus       141 Pav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIV  189 (293)
T COG4535         141 PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIV  189 (293)
T ss_pred             cceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHh
Confidence            7788999999999999999999999999999999999999999998854

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.89  E-value=7.4e-08  Score=85.09  Aligned_cols=103  Identities=18%  Similarity=0.195  Sum_probs=88.0

Q ss_pred             eCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHHHHh
Q 023512          157 ISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIM  235 (281)
Q Consensus       157 v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~  235 (281)
                      ..++.+..+++..|...+.++++|+| ++++.|+++..++. ......     ..+.+.+.....++.+++++.+++..+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLK-TALTQQ-----QGLDAALIDAPLAVDAQTPLSELLSHV  363 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHH-hhhhcC-----CchhhhhccCCceeCCCCCHHHHHHHH
Confidence            44677899999999999999999999 89999999999995 333321     146666677788999999999999999


Q ss_pred             HhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512          236 HDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (281)
Q Consensus       236 ~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~  266 (281)
                      .+.... +||+|++|+++|+|+..+++++..
T Consensus       364 ~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~  393 (400)
T PRK10070        364 GQAPCA-VPVVDEDQQYVGIISKGMLLRALD  393 (400)
T ss_pred             HhCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence            998766 999999999999999999998864

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.74  E-value=7e-07  Score=77.99  Aligned_cols=149  Identities=15%  Similarity=0.239  Sum_probs=103.4

Q ss_pred             cEEEEEcCCCcEEEEEehHHHHHH--------HHHhcC---CCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEe
Q 023512            7 DALLLTDSNALLCGILTDKDIATR--------VIAREL---NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHL   75 (281)
Q Consensus         7 ~~~~v~~~~~~~~Gi~t~~d~~~~--------~~~~~~---~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~   75 (281)
                      ..+.+.+ +|+++..-+..+++..        ......   .+....+.+.|........++.+..++++.|...+...+
T Consensus       198 drI~vl~-~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (363)
T TIGR01186       198 DRIVIMK-AGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVFDAERIAQRMNTGPITKTADKGPRSALQLMRDERVDSL  276 (363)
T ss_pred             CEEEEEe-CCEEEeeCCHHHHHhCcccHHHHHHhhccchhcccchhhHhhhccccceeecCCCCHHHHHHHHHhcCCceE
Confidence            4556665 4788777777776532        111110   111112222333444456677789999999999999999


Q ss_pred             eEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCce
Q 023512           76 PVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV  154 (281)
Q Consensus        76 pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~  154 (281)
                      .|+++ +++.|.++..++..+...                                          ...+.+.+.  ...
T Consensus       277 ~~~~~~~~~~g~~~~~~~~~~~~~------------------------------------------~~~~~~~~~--~~~  312 (363)
T TIGR01186       277 YVVDRQNKLVGVVDVESIKQARKK------------------------------------------AQGLQDVLI--DDI  312 (363)
T ss_pred             EEEcCCCCEEEEEeHHHHHHHhhc------------------------------------------CCchhhhhc--cCC
Confidence            99985 999999999887543110                                          011233332  557


Q ss_pred             eEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHh
Q 023512          155 VTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS  201 (281)
Q Consensus       155 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~  201 (281)
                      .++++++++.+++..|.+++.. +||++ +|+++|+||..+++..+..
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       313 YTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             ceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence            8899999999999999999888 99999 9999999999999865544

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.70  E-value=3.8e-08  Score=88.00  Aligned_cols=155  Identities=17%  Similarity=0.134  Sum_probs=103.5

Q ss_pred             CcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC------CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHH
Q 023512           39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN------GEVIALLDIAKCLYDAIARMERAAEKGKAIAA  112 (281)
Q Consensus        39 ~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~------~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~  112 (281)
                      .+.+++++|++++++++.-+.+....+.+.++.++.+||+|+      +++.|+|-++.++.-......... +......
T Consensus       580 r~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~-~~~~~~~  658 (762)
T KOG0474|consen  580 RNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEE-SRSTFDL  658 (762)
T ss_pred             hhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhcc-CccccCc
Confidence            467899999999999999999999999999999999999983      478898877777654333211100 0000000


Q ss_pred             HHh--hHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEe
Q 023512          113 AVE--GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGI  189 (281)
Q Consensus       113 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gi  189 (281)
                      ...  -..........+-.+..-...+.--...+..+|.  +.++++++++++..+..+|++-+.+++.|++ .+..+|+
T Consensus       659 ~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n--~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gi  736 (762)
T KOG0474|consen  659 PVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMN--PSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGI  736 (762)
T ss_pred             chhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccC--CCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEE
Confidence            000  0000000000000111101111122345677776  6799999999999999999999999999999 6677999


Q ss_pred             eeHHHHH
Q 023512          190 LTSKDIL  196 (281)
Q Consensus       190 vt~~di~  196 (281)
                      +|++|+.
T Consensus       737 lTR~D~~  743 (762)
T KOG0474|consen  737 LTRKDLA  743 (762)
T ss_pred             Eehhhhh
Confidence            9999997

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=1.2e-06  Score=77.52  Aligned_cols=150  Identities=11%  Similarity=0.070  Sum_probs=102.8

Q ss_pred             cEEEEEcCCCcEEEEEehHHHHH--------HHHHhcCCCCcccccccccCCC---eEecCCchHHHHHHHhHhCCCcEe
Q 023512            7 DALLLTDSNALLCGILTDKDIAT--------RVIARELNLEETPVSKVMTRNP---TFVLSDTLAVEALQKMVQGKFRHL   75 (281)
Q Consensus         7 ~~~~v~~~~~~~~Gi~t~~d~~~--------~~~~~~~~~~~~~v~dim~~~~---~~v~~~~~l~~a~~~m~~~~~~~~   75 (281)
                      ..+.+.+ +|+++..-+..+++.        .++.......-.++.++|.+.+   +...++.+..+++..|...+...+
T Consensus       233 Dri~vL~-~G~i~~~g~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (400)
T PRK10070        233 DRIAIMQ-NGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYG  311 (400)
T ss_pred             CEEEEEE-CCEEEecCCHHHHHhCcccHHHHHHHhccccccccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceE
Confidence            4455555 366665545555532        1111111111246777885433   233467789999999999999999


Q ss_pred             eEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCce
Q 023512           76 PVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV  154 (281)
Q Consensus        76 pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~  154 (281)
                      +|+|+ ++++|+++..++....-.                                          ...+.+.+.  ...
T Consensus       312 ~~~~~~~~~~g~~~~~~~~~~~~~------------------------------------------~~~~~~~~~--~~~  347 (400)
T PRK10070        312 YVIERGNKFVGAVSIDSLKTALTQ------------------------------------------QQGLDAALI--DAP  347 (400)
T ss_pred             EEEcCCCcEEEEEeHHHHHhhhhc------------------------------------------CCchhhhhc--cCC
Confidence            99985 999999999998643100                                          011222232  557


Q ss_pred             eEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhc
Q 023512          155 VTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ  202 (281)
Q Consensus       155 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~  202 (281)
                      .++.+++++.+++..+.+.... +||+| +|+++|+||..++++.+...
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        348 LAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             ceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            8899999999999999987655 89999 99999999999998655443

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.68  E-value=5.4e-08  Score=82.92  Aligned_cols=162  Identities=12%  Similarity=0.155  Sum_probs=115.6

Q ss_pred             CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCC
Q 023512           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS  124 (281)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~----~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (281)
                      .+++++.|+.++.++++....+++..+||.++    .+++|+|+.+|+-..                             
T Consensus       116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-----------------------------  166 (503)
T KOG2550|consen  116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-----------------------------  166 (503)
T ss_pred             cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-----------------------------
Confidence            47789999999999999999999999999974    689999999997321                             


Q ss_pred             CCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcC
Q 023512          125 ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN  203 (281)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~  203 (281)
                                   .-....+.++|+  .+.++.+.+.++.++-+.+.+++-..+||+| +|+++.++++.|+. +...-.
T Consensus       167 -------------~~~~~~~~~vmt--~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~-k~~~yP  230 (503)
T KOG2550|consen  167 -------------EDNSLLVSDVMT--KNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLM-KNRDYP  230 (503)
T ss_pred             -------------hcccchhhhhcc--cccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhh-hhcCCC
Confidence                         112234788888  4458899999999999999999889999999 99999999999996 332111


Q ss_pred             CCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEh
Q 023512          204 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDV  258 (281)
Q Consensus       204 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~  258 (281)
                      .... ..-+.++-...  +...+.=.+-++++.+.+++.+..-..+|.-+--+..
T Consensus       231 lask-~~~kqll~gAa--iGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiem  282 (503)
T KOG2550|consen  231 LASK-DSTKQLLCGAA--IGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEM  282 (503)
T ss_pred             cccc-Ccccceeeeec--cccccchhHHHHHhhhcCCcEEEEecCCCcchhHHHH
Confidence            1100 11222332221  2333334677788888888777554466764433333

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.58  E-value=1.2e-07  Score=84.92  Aligned_cols=124  Identities=13%  Similarity=0.206  Sum_probs=102.9

Q ss_pred             hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe---C---CeeeEeeeHHHHHHHHHhcCCCC------
Q 023512          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---E---NKPRGILTSKDILMRVISQNLPA------  206 (281)
Q Consensus       139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~---~~~~Givt~~di~~~~~~~~~~~------  206 (281)
                      +...+..++|.  +++..++..+.+..+.+.++...++.+||+|   .   +++.|+|-+++++ .++.+....      
T Consensus       579 mr~L~a~ev~~--~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~-vlL~~~~f~~~~~~~  655 (762)
T KOG0474|consen  579 MRNLTAGEVMS--KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLL-VLLKKRVFVEESRST  655 (762)
T ss_pred             hhhhhHhhhcc--CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHH-HHHHhhhhhccCccc
Confidence            34456788887  7899999999999999999999999999998   2   4688999999987 443221000      


Q ss_pred             --------------------------------ccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEE
Q 023512          207 --------------------------------DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVD  254 (281)
Q Consensus       207 --------------------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~G  254 (281)
                                                      .-.++..+|++.|+++++++++..++.+|.+-+++++.|++..+..+|
T Consensus       656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~g  735 (762)
T KOG0474|consen  656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVG  735 (762)
T ss_pred             cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeE
Confidence                                            013566778899999999999999999999999999999998888999


Q ss_pred             EEEhhhHHHhh
Q 023512          255 VVDVIHITHAA  265 (281)
Q Consensus       255 vis~~di~~~~  265 (281)
                      ++|+.|+..+.
T Consensus       736 ilTR~D~~~~~  746 (762)
T KOG0474|consen  736 ILTRKDLARYR  746 (762)
T ss_pred             EEehhhhhhHH
Confidence            99999999764

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.36  E-value=9.5e-07  Score=64.15  Aligned_cols=55  Identities=29%  Similarity=0.579  Sum_probs=51.0

Q ss_pred             ccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       209 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      .++.++|.+.+.++++++++.++++.|.+.+.+.+||+|++|+++|+|+..||.+
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            4688999889999999999999999999999999999998899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.36  E-value=8.8e-07  Score=64.33  Aligned_cols=53  Identities=26%  Similarity=0.412  Sum_probs=49.9

Q ss_pred             ccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHH
Q 023512           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCL   93 (281)
Q Consensus        41 ~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll   93 (281)
                      .+++++|.+++.++++++++.++++.|.++++..+||+++ ++++|+++..++.
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~  111 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLA  111 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhh
Confidence            6899999999999999999999999999999999999985 8999999999975

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.22  E-value=1.8e-05  Score=71.43  Aligned_cols=113  Identities=11%  Similarity=0.195  Sum_probs=91.6

Q ss_pred             ceeEeCCC-CcHHHHHHHHHHcCccEEEEEe---CCeeeEeeeHHHHHHHHHhcC-CC---------------------C
Q 023512          153 KVVTISPT-DTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQN-LP---------------------A  206 (281)
Q Consensus       153 ~~~~v~~~-~~l~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~di~~~~~~~~-~~---------------------~  206 (281)
                      +..+++.+ .++.++...|.+..++.+||+-   .++++|++.++|+.-.+.... .+                     +
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~  636 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIP  636 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCC
Confidence            46666555 8999999999998888788764   678999999999976554221 10                     1


Q ss_pred             ccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512          207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (281)
Q Consensus       207 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~  266 (281)
                      .....+++|+..|.++...++.+.+++++.+-+++.+.|. ++|++.|+||.+|+++..+
T Consensus       637 ~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~r  695 (696)
T KOG0475|consen  637 SRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHTR  695 (696)
T ss_pred             CCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhhc
Confidence            1245678888999999999999999999999999999775 5999999999999998764

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.12  E-value=1e-05  Score=48.23  Aligned_cols=47  Identities=30%  Similarity=0.454  Sum_probs=42.6

Q ss_pred             CeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhh
Q 023512          219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (281)
Q Consensus       219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~  265 (281)
                      +.++++++++.++.+.|.+.+.+.+||++++++++|+++..++++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            56788999999999999999999999999889999999999998754

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.10  E-value=1.6e-05  Score=66.51  Aligned_cols=147  Identities=16%  Similarity=0.252  Sum_probs=103.9

Q ss_pred             EeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhh---cCCCccccccC
Q 023512           74 HLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERM---FRPSLSTIIPE  150 (281)
Q Consensus        74 ~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~m~~  150 (281)
                      ++.+..+|+++-+-+..+++..                               |++++...+-+..   ...+..++|.+
T Consensus       234 rIaimkdG~ivQ~Gtp~eIl~~-------------------------------PAndYV~~Fv~~v~~~~VltA~~IM~~  282 (386)
T COG4175         234 RIAIMKDGEIVQVGTPEEILLN-------------------------------PANDYVRDFVRNVDRSRVLTAKDIMRR  282 (386)
T ss_pred             eEEEecCCeEEEeCCHHHHHcC-------------------------------ccHHHHHHHHhcCChhheeeHHHhhcc
Confidence            5666677888888888887642                               4455555553322   23345777764


Q ss_pred             CCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHH
Q 023512          151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIV  229 (281)
Q Consensus       151 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~  229 (281)
                      ......-.+......++..+.......+.+++ .++.+|+++..+....               .+...+.++..++++.
T Consensus       283 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~---------------~~~~~~~~v~~d~~~~  347 (386)
T COG4175         283 PDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA---------------ALIDDVLTVDADTPLS  347 (386)
T ss_pred             cccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc---------------cccccccccCccchHH
Confidence            22222333444556677888877766666666 7779999999998621               3446677888999999


Q ss_pred             HHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          230 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       230 ~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      +.+....+.+. .+||+|++|+++|+|+...++.+...
T Consensus       348 ~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         348 EILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             HHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHhc
Confidence            99999888876 67899999999999999999988543

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.09  E-value=1.9e-05  Score=71.18  Aligned_cols=131  Identities=17%  Similarity=0.149  Sum_probs=91.5

Q ss_pred             CeEecC-CchHHHHHHHhHhCCCcEeeEee---CCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCC
Q 023512           51 PTFVLS-DTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS  126 (281)
Q Consensus        51 ~~~v~~-~~~l~~a~~~m~~~~~~~~pV~d---~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (281)
                      ...+.. ++++.+...+|.++.++.+||+-   .++++|+++.+++...+.........    ...... +  ..+..  
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~----~~~~~~-~--f~~~~--  628 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSF----IVTTSI-Y--FNDPS--  628 (696)
T ss_pred             heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhcccccc----ceeccc-c--cCCCC--
Confidence            555544 49999999999999999999983   38999999999997765432211110    000000 0  00000  


Q ss_pred             ChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHH
Q 023512          127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILM  197 (281)
Q Consensus       127 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~  197 (281)
                       +.    ...........+++|.  ..+.++...++.+-+++.+++-+...+.|..+|++.|+||.+|+++
T Consensus       629 -~~----~~~~~~~~~~lk~il~--~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l~  692 (696)
T KOG0475|consen  629 -PS----AVAGIPSRLDLKDILD--MTPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCLR  692 (696)
T ss_pred             -cc----ccCCCCCCcCceeecc--CCcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHHH
Confidence             00    0011223345677776  6688899999999999999999999999999999999999999984

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.84  E-value=7.2e-05  Score=44.38  Aligned_cols=46  Identities=26%  Similarity=0.395  Sum_probs=41.0

Q ss_pred             CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHH
Q 023512           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYD   95 (281)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~   95 (281)
                      ++.++++++++.++++.|.+++++.+||+++ ++++|+++..+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~   47 (49)
T smart00116        1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA   47 (49)
T ss_pred             CceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence            3567899999999999999999999999986 899999999998653

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.74  E-value=0.00019  Score=66.31  Aligned_cols=60  Identities=15%  Similarity=0.161  Sum_probs=53.5

Q ss_pred             cccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC---CeEEEEEehHHHHHHHHHH
Q 023512           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN---GEVIALLDIAKCLYDAIAR   99 (281)
Q Consensus        40 ~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~---~~~vGvi~~~dll~~~~~~   99 (281)
                      .+.|+++|.+++.++..+.|..|.-+.+..+.++.+|++|+   .-++|-+.++.+...+-..
T Consensus       587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~  649 (931)
T KOG0476|consen  587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRH  649 (931)
T ss_pred             EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhh
Confidence            56799999999999999999999999999888999999984   5799999999988776653

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.65  E-value=0.00073  Score=59.58  Aligned_cols=83  Identities=22%  Similarity=0.188  Sum_probs=63.2

Q ss_pred             cCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcE
Q 023512          173 LRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV  252 (281)
Q Consensus       173 ~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~  252 (281)
                      .+..++.|++.    |+++..+.. .......   ...+.+ +.....++++++++.+++..+.+.+. -++|+|+ |++
T Consensus       298 ~~~~~~~~~~~----~~~~~~~~~-~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~  366 (382)
T TIGR03415       298 RRDTWLFTIDK----QVRRRDAKL-PVQAWAA---EQEVES-LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRI  366 (382)
T ss_pred             cccceeEeecc----ceecccchH-hHhhccc---ccchhh-hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeE
Confidence            67788888887    788877764 3333111   123555 45667889999999999999999876 5788885 999


Q ss_pred             EEEEEhhhHHHhhh
Q 023512          253 VDVVDVIHITHAAV  266 (281)
Q Consensus       253 ~Gvis~~di~~~~~  266 (281)
                      +|+|+..+++.+..
T Consensus       367 ~g~~~~~~~~~~~~  380 (382)
T TIGR03415       367 VGVIGDDNIYHALL  380 (382)
T ss_pred             EEEEeHHHHHHHHh
Confidence            99999999998864

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.35  E-value=0.0043  Score=54.81  Aligned_cols=140  Identities=9%  Similarity=0.060  Sum_probs=84.7

Q ss_pred             cEEEEEcCCCcEEEEEehHHHH--------HHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEe
Q 023512            7 DALLLTDSNALLCGILTDKDIA--------TRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV   78 (281)
Q Consensus         7 ~~~~v~~~~~~~~Gi~t~~d~~--------~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~   78 (281)
                      +.+.+.+ +|+++..-+..+++        +.+........=.+++++|.+.......+-+  .+++.   ++...+.|+
T Consensus       233 DrI~vl~-~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~l~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~  306 (382)
T TIGR03415       233 NRIAIME-GGRIIQHGTPEEIVLNPANDYVADFVAHTNPLNVLTARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTI  306 (382)
T ss_pred             CEEEEEE-CCEEEEecCHHHHhhCcchHHHHHHhcccCcccceeHHHHhcccccccccCcc--hhhhh---cccceeEee
Confidence            4555666 46777666666654        2222222223335778899543333333333  33333   778888888


Q ss_pred             eCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeC
Q 023512           79 ENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS  158 (281)
Q Consensus        79 d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~  158 (281)
                      ++    |+++..+.....-                                        ......+.+ +.  .+..+++
T Consensus       307 ~~----~~~~~~~~~~~~~----------------------------------------~~~~~~~~~-~~--~~~~~~~  339 (382)
T TIGR03415       307 DK----QVRRRDAKLPVQA----------------------------------------WAAEQEVES-LE--AAPTVIN  339 (382)
T ss_pred             cc----ceecccchHhHhh----------------------------------------cccccchhh-hc--ccCcccC
Confidence            87    7777655432100                                        000011222 11  5678899


Q ss_pred             CCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHH
Q 023512          159 PTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVI  200 (281)
Q Consensus       159 ~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~  200 (281)
                      +++++.+++..+...+.. ++|+++|+++|+|+..+++..+.
T Consensus       340 ~~~~~~~~~~~~~~~~~~-~~v~~~~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       340 PDTLMRDVLAARHRTGGA-ILLVENGRIVGVIGDDNIYHALL  380 (382)
T ss_pred             CCCcHHHHHHHHhcCCCC-eEEeeCCeEEEEEeHHHHHHHHh
Confidence            999999999988876655 67777899999999999985543

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.89  E-value=0.0072  Score=49.56  Aligned_cols=89  Identities=19%  Similarity=0.092  Sum_probs=62.1

Q ss_pred             cEEEEEeCCeeeEeeeHHHHHH--------HHHhcCCC----CccccccccccCCC----eeeeCCCCHHHHHHHhHhCC
Q 023512          176 SSAVVTVENKPRGILTSKDILM--------RVISQNLP----ADSTLVEKVMTPNP----ECATIDTPIVDALHIMHDGK  239 (281)
Q Consensus       176 ~~~~V~~~~~~~Givt~~di~~--------~~~~~~~~----~~~~~v~~~~~~~~----~~v~~~~~l~~~~~~~~~~~  239 (281)
                      +++.|+++|+++-+-+..+++.        .++.....    .....+.+.+....    -.........+++..+...+
T Consensus       204 dri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~  283 (309)
T COG1125         204 DRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARG  283 (309)
T ss_pred             ceEEEecCCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcC
Confidence            5578888899999999777764        33333311    12223444433221    22445566677899999999


Q ss_pred             CCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          240 FLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       240 ~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      ...+||+|++|+++|.+|+.+++..
T Consensus       284 ~~~~~Vvd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         284 RSVLPVVDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             CceeEEECCCCcEeeEEEHHHHhhh
Confidence            9999999999999999999999864

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.57  E-value=0.0064  Score=51.36  Aligned_cols=131  Identities=11%  Similarity=0.095  Sum_probs=91.0

Q ss_pred             CCcEEEEEehHHHHH--------HHHHhcCCCCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeE
Q 023512           15 NALLCGILTDKDIAT--------RVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEV   83 (281)
Q Consensus        15 ~~~~~Gi~t~~d~~~--------~~~~~~~~~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~   83 (281)
                      +|+++-+=|..+|+.        ....+.....=.++.++|.+  ..+.-.+...-..++..+...+...+.+++. ++.
T Consensus       240 dG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  319 (386)
T COG4175         240 DGEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKF  319 (386)
T ss_pred             CCeEEEeCCHHHHHcCccHHHHHHHHhcCChhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCce
Confidence            477777777776652        22333333334578899984  2233333455567888888887766666664 779


Q ss_pred             EEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcH
Q 023512           84 IALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTV  163 (281)
Q Consensus        84 vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l  163 (281)
                      +|+++..+....                                                   .+  .+++.++.+++++
T Consensus       320 ~g~v~~~~~~~~---------------------------------------------------~~--~~~~~~v~~d~~~  346 (386)
T COG4175         320 VGVVSIDSLVKA---------------------------------------------------AL--IDDVLTVDADTPL  346 (386)
T ss_pred             eeEEeccchhcc---------------------------------------------------cc--cccccccCccchH
Confidence            999998876432                                                   11  1668889999999


Q ss_pred             HHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHH
Q 023512          164 LMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  199 (281)
Q Consensus       164 ~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~  199 (281)
                      .+.+....+.+.. ++|+| +++++|+++...++..+
T Consensus       347 ~~~~~~~~~~~~p-~aVvde~~r~vG~i~~~~vl~aL  382 (386)
T COG4175         347 SEILARIRQAPCP-VAVVDEDGRYVGIISRGELLEAL  382 (386)
T ss_pred             HHHHHHHhcCCCc-eeEEcCCCcEEEEecHHHHHHHH
Confidence            9999988876655 46666 99999999999998444

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=94.50  E-value=0.071  Score=48.77  Aligned_cols=120  Identities=14%  Similarity=0.177  Sum_probs=91.4

Q ss_pred             hcCCCccccccCCCceeEeCCCCcHHH-HHHHHHHcCccEEEEEe---CCeeeEeeeHHHHHHHHHhcCCCCcccccccc
Q 023512          139 MFRPSLSTIIPEKSKVVTISPTDTVLM-ATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKV  214 (281)
Q Consensus       139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~-~~~~~~~~~~~~~~V~~---~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~  214 (281)
                      +....+.++|+|..++.....+..+.. ......+++++++||.+   ...+.|++....+  .+..........++.++
T Consensus       201 l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~--~~~~~~~~~~~~~v~~~  278 (498)
T KOG2118|consen  201 LTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL--RLLQVEVPLEPLPVSES  278 (498)
T ss_pred             HHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh--hhhccccccccccchhh
Confidence            344457899998888999999998884 45555678999999999   3345555555555  33332224445677888


Q ss_pred             ccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhH
Q 023512          215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI  261 (281)
Q Consensus       215 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di  261 (281)
                      +......++.+.++.+.++.+...+.+.+.|.+ ...-+|+++..|+
T Consensus       279 ~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~  324 (498)
T KOG2118|consen  279 ALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL  324 (498)
T ss_pred             hccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch
Confidence            878888999999999999999999999888877 5668899999887

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=93.49  E-value=0.59  Score=38.72  Aligned_cols=86  Identities=17%  Similarity=0.209  Sum_probs=58.2

Q ss_pred             EEEEEcCCCcEEEEEehHH--------HHHHHHHhc----CCCCcccccccccCCCe----EecCCchHHHHHHHhHhCC
Q 023512            8 ALLLTDSNALLCGILTDKD--------IATRVIARE----LNLEETPVSKVMTRNPT----FVLSDTLAVEALQKMVQGK   71 (281)
Q Consensus         8 ~~~v~~~~~~~~Gi~t~~d--------~~~~~~~~~----~~~~~~~v~dim~~~~~----~v~~~~~l~~a~~~m~~~~   71 (281)
                      .+.|.+ +|+++=+=+..+        +++.++..+    ..+...++.+.|.+...    .+.....-.+++..+...+
T Consensus       205 ri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~  283 (309)
T COG1125         205 RIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARG  283 (309)
T ss_pred             eEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcC
Confidence            355666 578888888554        444443222    23344566676655332    2233455677888888999


Q ss_pred             CcEeeEeeC-CeEEEEEehHHHHH
Q 023512           72 FRHLPVVEN-GEVIALLDIAKCLY   94 (281)
Q Consensus        72 ~~~~pV~d~-~~~vGvi~~~dll~   94 (281)
                      ...+||+|+ |+++|.++..+++.
T Consensus       284 ~~~~~Vvd~~g~~~G~vt~~~l~~  307 (309)
T COG1125         284 RSVLPVVDEDGRPLGTVTRADLLD  307 (309)
T ss_pred             CceeEEECCCCcEeeEEEHHHHhh
Confidence            999999985 99999999999875

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=92.53  E-value=0.15  Score=47.98  Aligned_cols=65  Identities=15%  Similarity=0.100  Sum_probs=56.2

Q ss_pred             cccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEec--CCCcEEEEEEhhhHHHhhhchHHHH
Q 023512          208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVD--RDGDVVDVVDVIHITHAAVATEILL  272 (281)
Q Consensus       208 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~--~~~~~~Gvis~~di~~~~~~~~~~~  272 (281)
                      ...++++|.+++..+..+.|..|..+.+....++.+|+|+  ++..++|.|+++.+..+..+++.-.
T Consensus       587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig~~  653 (931)
T KOG0476|consen  587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIGPE  653 (931)
T ss_pred             EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcCcc
Confidence            3578899999999999999999999999998899999999  3356999999999999877765433

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=84.39  E-value=0.95  Score=41.57  Aligned_cols=124  Identities=19%  Similarity=0.145  Sum_probs=82.0

Q ss_pred             CCCcccccccccC--CCeEecCCchHH-HHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhhhhHH
Q 023512           37 NLEETPVSKVMTR--NPTFVLSDTLAV-EALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIA  111 (281)
Q Consensus        37 ~~~~~~v~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~  111 (281)
                      .+....++++|++  .+..+..+..+. +......+++++++||.+.  ...+|.+=....+...    ..         
T Consensus       200 ~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~----~~---------  266 (498)
T KOG2118|consen  200 ELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLL----QV---------  266 (498)
T ss_pred             HHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhh----cc---------
Confidence            4456678999985  666777777776 5555666999999999984  3344432111111110    00         


Q ss_pred             HHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeee
Q 023512          112 AAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILT  191 (281)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt  191 (281)
                                              ...+...++...+.  .+...++.++++.+.++.+...+.+.+.|.+...-.|+++
T Consensus       267 ------------------------~~~~~~~~v~~~~~--~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~~~~~~  320 (498)
T KOG2118|consen  267 ------------------------EVPLEPLPVSESAL--LRLPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVDIFVLT  320 (498)
T ss_pred             ------------------------ccccccccchhhhc--cccccCCCcccHHHHHHHHhhhhceeEEEecCCcceeeEe
Confidence                                    00112223344443  6688899999999999999998888888887666789999


Q ss_pred             HHHHHHHHH
Q 023512          192 SKDILMRVI  200 (281)
Q Consensus       192 ~~di~~~~~  200 (281)
                      ..++ ....
T Consensus       321 l~~~-~~~~  328 (498)
T KOG2118|consen  321 LEDL-EEVV  328 (498)
T ss_pred             ccch-hhhc
Confidence            9998 5555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	281
4fry_A	157	The Structure Of A Putative Signal-Transduction Pro		1e-08
3fhm_A	165	Crystal Structure Of The Cbs-Domain Containing Prot		2e-08
2rc3_A	135	Crystal Structure Of Cbs Domain, Ne2398 Length = 13		2e-08
2yzi_A	138	Crystal Structure Of Uncharacterized Conserved Prot		6e-04

>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein With Cbs Domains From Burkholderia Ambifaria Mc40-6 Length = 157

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MA + + ALL+ D + +  GI+T++D A +V+ +E + + T V ++MT    +V      
Sbjct: 39  MAEKGIGALLVVDGDDI-AGIVTERDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQST 97
Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIA 98
            E +  M + + RHLPV++ G++I L+ I   +   IA
Sbjct: 98  DECMALMTEHRMRHLPVLDGGKLIGLISIGDLVKSVIA 135

>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein Atu1752 From Agrobacterium Tumefaciens Length = 165

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 54/99 (54%)
Query: 3   ARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVE 62
           A ++ A+++TD++ ++ GI T++D+   V  +     +  VS  MT+N      ++   +
Sbjct: 55  AHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTKNVVRCQHNSTTDQ 114
Query: 63  ALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
            ++ M  G+FRH+PV ENG +  ++ I   +   I  +E
Sbjct: 115 LMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIGEIE 153

>pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398 Length = 135

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAA  + ALL+     L+ GILT++D + +    +  +++T V ++MTR   +V  +   
Sbjct: 35  MAADNIGALLVMKDEKLV-GILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTN 93
Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
            + +  + + + RHLPV+++G+VI LL I   + DAI++ +
Sbjct: 94  EDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAISQHQ 134

>pdb|2YZI|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein From Pyrococcus Horikoshii Length = 138

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 6   VDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQ 65
           V +L++ + +  + G  T  DI  RVI   L  +  PV ++ TRN      +T   E L+
Sbjct: 38  VGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYD-IPVERIXTRNLITANVNTPLGEVLR 96
Query: 66  KMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
           K  + + +H+ + E G+++ +  ++  L  +  R+E
Sbjct: 97  KXAEHRIKHILIEEEGKIVGIFTLSDLLEASRRRLE 132

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	281
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	2e-34
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	1e-27
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	2e-04
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	2e-29
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	2e-25
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	4e-09
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	3e-04
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	5e-28
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	3e-27
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	3e-07
4fry_A	157	Putative signal-transduction protein with CBS DOM;	1e-26
4fry_A	157	Putative signal-transduction protein with CBS DOM;	2e-26
4fry_A	157	Putative signal-transduction protein with CBS DOM;	2e-08
3ddj_A	296	CBS domain-containing protein; structural genomics	7e-26
3ddj_A	296	CBS domain-containing protein; structural genomics	7e-24
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-09
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-06
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	3e-25
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-22
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	3e-17
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	2e-24
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	2e-16
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	3e-10
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	2e-05
1pvm_A	184	Conserved hypothetical protein TA0289; structural	2e-24
1pvm_A	184	Conserved hypothetical protein TA0289; structural	2e-18
1pvm_A	184	Conserved hypothetical protein TA0289; structural	6e-07
1pvm_A	184	Conserved hypothetical protein TA0289; structural	9e-06
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	2e-23
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	2e-21
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	3e-08
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	1e-05
1pbj_A	125	Hypothetical protein; structural genomics, domain,	8e-22
1pbj_A	125	Hypothetical protein; structural genomics, domain,	5e-17
1pbj_A	125	Hypothetical protein; structural genomics, domain,	4e-10
1pbj_A	125	Hypothetical protein; structural genomics, domain,	3e-04
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	3e-20
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	3e-08
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	4e-20
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	4e-15
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	4e-06
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	1e-19
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	9e-16
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	3e-05
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	2e-19
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	5e-09
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	6e-05
3fio_A	70	A cystathionine beta-synthase domain protein fused	2e-19
3fio_A	70	A cystathionine beta-synthase domain protein fused	9e-13
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	3e-19
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	1e-08
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	5e-04
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	8e-04
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	8e-19
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	2e-13
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	2e-12
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	2e-08
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	1e-18
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	3e-11
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	4e-08
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	1e-06
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-18
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	4e-08
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-04
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	4e-17
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	9e-12
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	3e-08
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	8e-08
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	6e-16
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-15
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	1e-13
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-13
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	6e-16
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	8e-09
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	2e-07
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	3e-06
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	8e-16
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	7e-09
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	4e-08
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	1e-15
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	2e-12
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	1e-08
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	7e-07
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	2e-15
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	2e-09
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	1e-07
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	8e-07
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	7e-15
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	9e-10
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	8e-15
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	2e-08
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	4e-06
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	3e-05
1vr9_A	213	CBS domain protein/ACT domain protein; structural	8e-15
1vr9_A	213	CBS domain protein/ACT domain protein; structural	1e-08
1vr9_A	213	CBS domain protein/ACT domain protein; structural	1e-06
1vr9_A	213	CBS domain protein/ACT domain protein; structural	2e-06
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	2e-14
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	3e-11
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	4e-14
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	6e-06
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	5e-05
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	3e-11
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	3e-10
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	7e-08
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	3e-07
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	4e-11
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	3e-05
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	7e-05
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	3e-10
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	6e-06
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	4e-09
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	1e-08
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	4e-08
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	9e-08
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	2e-07
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	2e-06
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	3e-06
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	3e-06
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	5e-06
2oux_A	286	Magnesium transporter; 10001B, structural genomics	6e-06
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	9e-06
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	1e-05
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	4e-05
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	2e-04
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	3e-04

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score =  121 bits (306), Expect = 2e-34
 Identities = 32/113 (28%), Positives = 60/113 (53%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           + A ++ A+++TD++ ++ GI T++D+   V  +     +  VS  MT+N      ++  
Sbjct: 53  LHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTKNVVRCQHNSTT 112

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA 113
            + ++ M  G+FRH+PV ENG +  ++ I   +   I  +E  AE  KA  A 
Sbjct: 113 DQLMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIGEIEAEAEHIKAYIAG 165

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score =  103 bits (259), Expect = 1e-27
 Identities = 31/159 (19%), Positives = 67/159 (42%), Gaps = 7/159 (4%)

Query: 126 SGPNTFIETLRERMFRPSLSTIIPE-----KSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           S  +    + RE ++   ++T + +        VVT+ P  ++  A   +   ++ + VV
Sbjct: 4   SHHHHHHSSGRENLYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVV 63

Query: 181 T-VENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGK 239
           T  +    GI T +D++  V  Q   +    V   MT N      ++     + IM  G+
Sbjct: 64  TDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGR 123

Query: 240 FLHLPVVDRDGDVVDVVDVIHITHAAVATEILLDQIMRQ 278
           F H+PV + +G +  ++ +  +  A +       + ++ 
Sbjct: 124 FRHVPVEE-NGRLAGIISIGDVVKARIGEIEAEAEHIKA 161

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 24/172 (13%), Positives = 46/172 (26%), Gaps = 45/172 (26%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALL---DIAKCLYDAIA 98
           +     R+   V  D    EA   +   K   + V + +G V+ +    D+ K +     
Sbjct: 29  LLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAV----- 83

Query: 99  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 158
               A +   ++  +V                        M              VV   
Sbjct: 84  ----AGQGAASLQQSVSVA---------------------M-----------TKNVVRCQ 107

Query: 159 PTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
              T     + M   R     V    +  GI++  D++   I +       +
Sbjct: 108 HNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIGEIEAEAEHI 159

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score =  107 bits (270), Expect = 2e-29
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 1/105 (0%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    V +L++ + +  + G  T  DI  RVI   L  +  PV ++MTRN      +T  
Sbjct: 33  MMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYD-IPVERIMTRNLITANVNTPL 91

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAE 105
            E L+KM + + +H+ + E G+++ +  ++  L  +  R+E A  
Sbjct: 92  GEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRRLETAIS 136

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 97.3 bits (243), Expect = 2e-25
 Identities = 33/115 (28%), Positives = 62/115 (53%), Gaps = 3/115 (2%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 210
            K++ + P+ +V  A++ M+E  + S VV  ++    G  T  DI+ RVI   LP D   
Sbjct: 15  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYD-IP 73

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265
           VE++MT N   A ++TP+ + L  M + +  H+ + + +G +V +  +  +  A+
Sbjct: 74  VERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEAS 127

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 53.0 bits (128), Expect = 4e-09
 Identities = 33/173 (19%), Positives = 58/173 (33%), Gaps = 47/173 (27%)

Query: 34  RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DI 89
           R ++++  P+   MT+    V   T   EA + M++     L V+ ++G V+      DI
Sbjct: 1   RVMDMK-APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDI 59

Query: 90  AKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIP 149
            +          R    G      VE +                     M R        
Sbjct: 60  IR----------RVIVPGLPYDIPVERI---------------------MTRN------- 81

Query: 150 EKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ 202
               ++T +    +    +KM E R+   ++  E K  GI T  D+L     +
Sbjct: 82  ----LITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRR 130

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIH-ITH 263
              ++  MT         T + +A  +M +     L V++ DG+VV      D+I  +  
Sbjct: 6   KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV 65

Query: 264 AAVATEILLDQIM 276
             +  +I +++IM
Sbjct: 66  PGLPYDIPVERIM 78

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score =  103 bits (260), Expect = 5e-28
 Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 1/101 (0%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAA  + ALL+     L+ GILT++D + +    +  +++T V ++MTR   +V  +   
Sbjct: 35  MAADNIGALLVMKDEKLV-GILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTN 93

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
            + +  + + + RHLPV+++G+VI LL I   + DAI++ +
Sbjct: 94  EDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAISQHQ 134

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score =  101 bits (255), Expect = 3e-27
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 1/114 (0%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 213
           VV I P D+V  A +KM    + + +V  + K  GILT +D   +    + P   T V++
Sbjct: 19  VVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKE 78

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267
           +MT       ++    D + ++ + +  HLPV+D DG V+ ++ +  +   A++
Sbjct: 79  IMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS 131

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 47/169 (27%)

Query: 41  TPVSKVMTRNPTFVLS---DTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLY 94
             V  ++      V++   D     A+QKM       L V+++ +++ +L   D ++   
Sbjct: 6   KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSR--- 62

Query: 95  DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV 154
                  ++    K +                        ++E M R            V
Sbjct: 63  -------KSYLLDKPVKDT--------------------QVKEIMTRQ-----------V 84

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN 203
             +   +T       + E+R+    V  + K  G+L+  D++   ISQ+
Sbjct: 85  AYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAISQH 133

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score =  100 bits (252), Expect = 1e-26
 Identities = 31/109 (28%), Positives = 59/109 (54%), Gaps = 1/109 (0%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MA + + ALL+ D + +  GI+T++D A +V+ +E + + T V ++MT    +V      
Sbjct: 39  MAEKGIGALLVVDGDDI-AGIVTERDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQST 97

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKA 109
            E +  M + + RHLPV++ G++I L+ I   +   IA  +    + + 
Sbjct: 98  DECMALMTEHRMRHLPVLDGGKLIGLISIGDLVKSVIADQQFTISQLEH 146

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score =  100 bits (250), Expect = 2e-26
 Identities = 31/155 (20%), Positives = 66/155 (42%), Gaps = 6/155 (3%)

Query: 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKP 186
           GP +   T+ + +     S        + T++  D V  A K M E  + + +V   +  
Sbjct: 1   GPGSMSTTVAQILKAKPDSG-----RTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDI 55

Query: 187 RGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 246
            GI+T +D   +V+ Q   + +T VE++MT             + + +M + +  HLPV+
Sbjct: 56  AGIVTERDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVL 115

Query: 247 DRDGDVVDVVDVIHITHAAVATEILLDQIMRQQAQ 281
           D  G ++ ++ +  +  + +A +      +     
Sbjct: 116 D-GGKLIGLISIGDLVKSVIADQQFTISQLEHYIH 149

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 23/185 (12%), Positives = 56/185 (30%), Gaps = 45/185 (24%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIAR 99
                 R    V  +    +A++ M +     L VV+  ++  ++   D A+        
Sbjct: 15  AKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYAR-------- 66

Query: 100 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 159
             +   + ++  A                      + E M              V  + P
Sbjct: 67  --KVVLQERSSKAT--------------------RVEEIMTAK-----------VRYVEP 93

Query: 160 TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219
           + +       M E R+    V    K  G+++  D++ + +  +     + +E  +   P
Sbjct: 94  SQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGDLV-KSVIADQQFTISQLEHYIHGTP 152

Query: 220 ECATI 224
              ++
Sbjct: 153 SVTSV 157

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score =  102 bits (256), Expect = 7e-26
 Identities = 47/283 (16%), Positives = 93/283 (32%), Gaps = 65/283 (22%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARE---------LNLEETPVSKVMTRNP 51
           +    +  +++ +    + G+LT +D+ + V +            ++  TP+   MT NP
Sbjct: 46  INEGGIGRIIVANEK--IEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNP 103

Query: 52  TFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKG 107
             V + +    A+  MV   F  LPVV  N + + ++   +      D            
Sbjct: 104 VTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLDEIF------- 156

Query: 108 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMAT 167
                                      ++  M            +KV TI     +  A 
Sbjct: 157 --------------------------PVKVFM-----------STKVQTIYKEVRLDQAV 179

Query: 168 KKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPAD-----STLVEKVMTPNPEC 221
           K ML        V+  +NK  GI+T  + + ++       D       +V+ VM  N   
Sbjct: 180 KLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVT 239

Query: 222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
                 +  A   M   +   L ++++D  +  ++    +  A
Sbjct: 240 IDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIA 282

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 97.1 bits (242), Expect = 7e-24
 Identities = 41/252 (16%), Positives = 77/252 (30%), Gaps = 38/252 (15%)

Query: 25  KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEV- 83
             I        L  +   +  +M +NP  +  +     A +K+ +G    + V       
Sbjct: 4   DKIHHHHHHENLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEG 63

Query: 84  -IALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRP 142
            +   D+   +           +        +                        M   
Sbjct: 64  LLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDY---------------------MTPN 102

Query: 143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVIS 201
                       VT+  T     A   M+     S  VV + +KP GI+T ++ L+    
Sbjct: 103 -----------PVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD 151

Query: 202 QNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI 261
            +   +   V+  M+   +    +  +  A+ +M    F  LPV+D D  VV +V V++ 
Sbjct: 152 LD---EIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNA 208

Query: 262 THAAVATEILLD 273
                     LD
Sbjct: 209 IKQLAKAVDKLD 220

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 9/104 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIA-----TRVIARELNLEETPVSKVMTRNPTFVL 55
           M  R    L + D +  + GI+T  +                     V  VM  N   + 
Sbjct: 182 MLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVTID 241

Query: 56  SDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYD 95
                  A  +M+  +   L ++ ++  +  ++   D+   L+ 
Sbjct: 242 ELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHH 285

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 11/58 (18%), Positives = 23/58 (39%)

Query: 190 LTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVD 247
           + S  I      +NL      +E +M  NP   + +  +  A   +++G    + V +
Sbjct: 1   MGSDKIHHHHHHENLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN 58

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score =  100 bits (251), Expect = 3e-25
 Identities = 46/284 (16%), Positives = 91/284 (32%), Gaps = 71/284 (25%)

Query: 1   MAARRVDALLLTDS-NALLCGILTDKDIATRVIARE-------------LNLEETPVSKV 46
           M   +   L + ++ N  + GI+T  DI   +                 L     PV ++
Sbjct: 30  MNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREI 89

Query: 47  MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMER 102
           M  N   +  +    EA++  +       P+V +  ++I+L+   D+ + L D I   E 
Sbjct: 90  MEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEV 149

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
                                           + + + R            V+  +P + 
Sbjct: 150 --------------------------------IDDYITRD-----------VIVATPGER 166

Query: 163 VLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ----------NLPADSTLVE 212
           +    + M+        V  E +  GI+TS D +  + S                +  +E
Sbjct: 167 LKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRME 226

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           ++M  +   A     +     IM       LPVVD +  +  ++
Sbjct: 227 EIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGII 270

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 92.9 bits (231), Expect = 2e-22
 Identities = 47/246 (19%), Positives = 89/246 (36%), Gaps = 40/246 (16%)

Query: 42  PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE-----VIALLDIAKCLYDA 96
            +     +    V   T   +AL  M + K+R LPVV  G      +I  +DI   +   
Sbjct: 5   VMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGG 64

Query: 97  IARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVT 156
                   +  +   AA+                  E +RE M              V+T
Sbjct: 65  SKYNLIREKHERNFLAAIN-----------------EPVREIMEEN-----------VIT 96

Query: 157 ISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVM 215
           +     +  A +  L   +  A +V  EN+   ++T +D++  ++ +    +   ++  +
Sbjct: 97  LKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEV--IDDYI 154

Query: 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHITHAAVATEILL 272
           T +   AT    + D    M    F  LPVV  +G +V ++   D I +  +  A   + 
Sbjct: 155 TRDVIVATPGERLKDVARTMVRNGFRRLPVVS-EGRLVGIITSTDFIKLLGSDWAFNHMQ 213

Query: 273 DQIMRQ 278
              +R+
Sbjct: 214 TGNVRE 219

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 78.6 bits (194), Expect = 3e-17
 Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 37/200 (18%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
              + V    + +    L  ++T++D+   ++  +   E   +   +TR+          
Sbjct: 110 FLTKNVGGAPIVNDENQLISLITERDVIRALL--DKIDENEVIDDYITRDVIVATPGERL 167

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIARMERAAEKGKAIAAAVEGV 117
            +  + MV+  FR LPVV  G ++ ++   D  K L    A         + I       
Sbjct: 168 KDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNV---- 223

Query: 118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS 177
                            + E M R            V+T    D +    + M+   + +
Sbjct: 224 ----------------RMEEIMKRD-----------VITAKEGDKLKKIAEIMVTNDIGA 256

Query: 178 AVVTVEN-KPRGILTSKDIL 196
             V  EN + +GI+T KD+L
Sbjct: 257 LPVVDENLRIKGIITEKDVL 276

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 94.2 bits (235), Expect = 2e-24
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
           ++V++++    +    K M E  + S +V   NKP GI+T +DI+ + I +    + T  
Sbjct: 12  TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIV-KAIGKGKSLE-TKA 69

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           E+ MT +      D+PI  AL +M      HLPVVD  G++  ++
Sbjct: 70  EEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGII 114

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 73.4 bits (181), Expect = 2e-16
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 7/105 (6%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M  + + ++++ D N  + GI+T++DI  + I +  +LE T   + MT +   +  D+  
Sbjct: 30  MTEKNIGSVIVVDGNKPV-GIITERDIV-KAIGKGKSLE-TKAEEFMTASLITIREDSPI 86

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARME 101
             AL  M Q   RHLPVV + G +  ++   DI + + D    M 
Sbjct: 87  TGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFETMG 131

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 56.1 bits (136), Expect = 3e-10
 Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 47/170 (27%)

Query: 38  LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLY 94
           +EE  V + M      V  D    +  + M +     + VV+  + + ++   DI     
Sbjct: 1   MEEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIV---- 56

Query: 95  DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV 154
                  +A  KGK++    E                       M              +
Sbjct: 57  -------KAIGKGKSLETKAEEF---------------------MTAS-----------L 77

Query: 155 VTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQN 203
           +TI     +  A   M +  +    VV  +   +GI++ +DI   +    
Sbjct: 78  ITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMF 127

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHITH 263
           +  +V++ M       T D  + D   +M +     + VVD     V ++   D++    
Sbjct: 2   EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIG 60

Query: 264 AAVATEILLDQIM 276
              + E   ++ M
Sbjct: 61  KGKSLETKAEEFM 73

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 95.5 bits (238), Expect = 2e-24
 Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 4/130 (3%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 210
           S   T++   TV  A K M E  L   VV  +N    G+L+ + I+ R I +N   D   
Sbjct: 17  SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVP 76

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHITHAAVA 267
           +  VM         D  + D    + +       VVD  G VV +V   D+      A  
Sbjct: 77  IRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASI 136

Query: 268 TEILLDQIMR 277
           T+ILL    +
Sbjct: 137 TDILLSHRTK 146

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 80.1 bits (198), Expect = 2e-18
 Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 9/130 (6%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    +  L++ D N    G+L+++ I  R I R    +E P+  VM +    V SD   
Sbjct: 35  MNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDV 94

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKGKAI-----A 111
            +    + +       VV + G V+ ++   D+++ L  A       + + K        
Sbjct: 95  KDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASITDILLSHRTKDYQHLCPK 154

Query: 112 AAVEGVEKHW 121
             V  +E  +
Sbjct: 155 CGVGVLEPVY 164

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 47/177 (26%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIA 98
           V K+M  N   V  +T   +A++ M +     L V  +NG  + LL    I K     I 
Sbjct: 11  VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRF---IP 67

Query: 99  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 158
           R ++  E                             +R  M           +  +  + 
Sbjct: 68  RNKKPDEV---------------------------PIRLVM-----------RKPIPKVK 89

Query: 159 PTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKV 214
               V      + E  L    VV    +  GI+T  D+  R +S+    D  L  + 
Sbjct: 90  SDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS-RYLSRASITDILLSHRT 145

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIH--ITHAA 265
           VEK+M  N +    +T + DA+ IM++     L V D +G+ V ++    +I   I    
Sbjct: 11  VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK 70

Query: 266 VATEILLDQIM 276
              E+ +  +M
Sbjct: 71  KPDEVPIRLVM 81

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 91.8 bits (229), Expect = 2e-23
 Identities = 18/106 (16%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 210
           + V  +   +T+  A + M E  + +  +  ++ +  G+LT +DI+++ ++  L  ++  
Sbjct: 16  AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 75

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
             ++   +      +  I + L++M + +   +PV+  +  +V +V
Sbjct: 76  AGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIV 120

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 86.4 bits (215), Expect = 2e-21
 Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 3/98 (3%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    + AL +   +  L G+LTD+DI  + +A  L+       ++   +  +V ++   
Sbjct: 34  MREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDANASI 93

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYD 95
            E L  M + + R +PV+    ++ ++   DIA+ L +
Sbjct: 94  QEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHLPE 131

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 50.6 bits (122), Expect = 3e-08
 Identities = 26/170 (15%), Positives = 46/170 (27%), Gaps = 46/170 (27%)

Query: 38  LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCL 93
              T    +M    T V        A Q M +     LP+  ++  +  +L   DI    
Sbjct: 5   FTMTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVI-- 62

Query: 94  YDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSK 153
                   +    G     A                    T  E                
Sbjct: 63  --------KGLAAGLDPNTA--------------------TAGELARDS----------- 83

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN 203
           +  +    ++      M E ++    V  E++  GI+T  DI  R + ++
Sbjct: 84  IYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIA-RHLPEH 132

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 9/52 (17%), Positives = 16/52 (30%)

Query: 205 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           P   T    +M     C      +  A   M +     LP+   D  +  ++
Sbjct: 4   PFTMTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGML 55

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 87.2 bits (217), Expect = 8e-22
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 2/105 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
           + V TI  T ++    +  +E    S+VV  E    GI+T+ D+L   I++        V
Sbjct: 9   TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVL-EAIAEGDDLAEVKV 67

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            +VM  +    +    I +A   M       L V + D +++ V+
Sbjct: 68  WEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVI 111

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 74.5 bits (184), Expect = 5e-17
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
                  + ++      + GI+T  D+    IA   +L E  V +VM R+   +      
Sbjct: 27  YVENAKGSSVVVKEGVRV-GIVTTWDVL-EAIAEGDDLAEVKVWEVMERDLVTISPRATI 84

Query: 61  VEALQKMVQGKFRHLPVVENGEVI 84
            EA +KMV+     L V E+ E+I
Sbjct: 85  KEAAEKMVKNVVWRLLVEEDDEII 108

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 55.6 bits (135), Expect = 4e-10
 Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 45/163 (27%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIAR 99
           V  VM  +   +       + L+  V+       VV+ G  + ++   D+ + +      
Sbjct: 3   VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAI------ 56

Query: 100 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 159
               AE        V  V                     M R            +VTISP
Sbjct: 57  ----AEGDDLAEVKVWEV---------------------MERD-----------LVTISP 80

Query: 160 TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ 202
             T+  A +KM++  +   +V  +++  G++++ DIL   +++
Sbjct: 81  RATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAKMAK 123

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 38.6 bits (91), Expect = 3e-04
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIH-ITHAA 265
            VE VM  + +   I   + D L    +       VV  +G  V +V   DV+  I    
Sbjct: 2   RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGD 60

Query: 266 VATEILLDQIM 276
              E+ + ++M
Sbjct: 61  DLAEVKVWEVM 71

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 83.1 bits (206), Expect = 4e-20
 Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 11/132 (8%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN---KPRGILTSKDILMRVISQNLPAD 207
           K   V++  T T+     ++ + R+  AV+T  +   +P  +++ +DIL R ++Q L  D
Sbjct: 12  KRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL-RAVAQRLDLD 70

Query: 208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHITHA 264
                 +   +P       P+  A   M      H+ VV+++G++V V+   D+      
Sbjct: 71  -GPAMPIAN-SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCF--ER 126

Query: 265 AVATEILLDQIM 276
           A+  E+   ++ 
Sbjct: 127 AILLELATAEVP 138

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 69.6 bits (171), Expect = 4e-15
 Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 6/109 (5%)

Query: 1   MAARRVDALLLT--DSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDT 58
           +A  RV   +LT  D+      +++++DI  R +A+ L+L+  P   +   +P  VL   
Sbjct: 31  LAKNRVGLAVLTARDNPKRPVAVVSERDIL-RAVAQRLDLD-GPAMPIAN-SPITVLDTD 87

Query: 59  LAVEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDAIARMERAAEK 106
               A +KM +   RH+ VV +NGE++ +L I    ++    +E A  +
Sbjct: 88  PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAILLELATAE 136

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 19/163 (11%), Positives = 46/163 (28%), Gaps = 51/163 (31%)

Query: 41  TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL------DIAKCLY 94
              S+++ R P  +       E   ++ + +     +         +      DI + + 
Sbjct: 5   IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAV- 63

Query: 95  DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV 154
                      +   +      +                                  +  
Sbjct: 64  ----------AQRLDLDGPAMPI---------------------A------------NSP 80

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDIL 196
           +T+  TD V +A +KM    +   VV  +N +  G+L+ +D+ 
Sbjct: 81  ITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC 123

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 82.4 bits (204), Expect = 1e-19
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 4/114 (3%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 210
           S  V I    +V  A   M    + +  V   +    G+L+ KD+L   I Q     S  
Sbjct: 24  SIPVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQEL-TSVP 82

Query: 211 VEKVMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 262
           V  +MT  P       +  ++D    + + +   LPV+       +V+  +  T
Sbjct: 83  VHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKT 136

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 72.0 bits (177), Expect = 9e-16
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 10/104 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNP--TFVLSDT 58
           M    V  L + D +A+L G+L+ KD+    I ++  L   PV  +MTR P  T    + 
Sbjct: 42  MFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQ-ELTSVPVHIIMTRMPNITVCRRED 100

Query: 59  LAVEALQKMVQGKFRHLPVVENGEVIALL-------DIAKCLYD 95
             ++  + +++ +   LPV+++ +    +       ++ K L  
Sbjct: 101 YVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS 144

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 26/189 (13%), Positives = 63/189 (33%), Gaps = 52/189 (27%)

Query: 22  LTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-EN 80
           +T K   T+++A +L  ++  V    +  P  +  +    +A+  M       L VV  +
Sbjct: 1   MTGKTG-TQLLADKL--KKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRD 56

Query: 81  GEVIALL---DIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRE 137
             ++ +L   D+ +           +  + +  +  V  +                    
Sbjct: 57  AVLVGVLSRKDLLR----------ASIGQQELTSVPVHII-------------------- 86

Query: 138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPR---GILTSK 193
            M R            +      D V+   K ++E ++ +  V+   +K     G +T  
Sbjct: 87  -MTR---------MPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKT 136

Query: 194 DILMRVISQ 202
           ++   ++S 
Sbjct: 137 NMTKILVSL 145

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 81.7 bits (202), Expect = 2e-19
 Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPR 187
           N  I   ++   +  +  ++    KV  +   + +  A   +++   S+  V+    K  
Sbjct: 2   NAMISIPKDEFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLH 61

Query: 188 GILTSKDILMRVISQNL----PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHL 243
           G++++  IL  ++          +   VE+VM  +     ++     AL +  D  F  +
Sbjct: 62  GLISTAMILDGILGLERIEFERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--I 119

Query: 244 PVVDRDGDVV 253
             V+ DG   
Sbjct: 120 CAVNEDGYFE 129

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 53.2 bits (128), Expect = 5e-09
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 10/110 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIAREL----NLEETPVSKVMTRNPTFVLS 56
           +      A+ + D    L G+++   I   ++  E      LEE  V +VM ++   +  
Sbjct: 43  LVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQVMKQDIPVLKL 102

Query: 57  DTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMER 102
           +    +AL+  +   F  +  V E+G    +L    I K L   + +  R
Sbjct: 103 EDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKVRQHNR 150

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 10/71 (14%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 210 LVEKVMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267
            V+ +M  + + A +     +  AL ++    +  +PV+D    +  ++    I    + 
Sbjct: 16  FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILG 75

Query: 268 TEILLDQIMRQ 278
            E +  + + +
Sbjct: 76  LERIEFERLEE 86

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 81.3 bits (201), Expect = 3e-19
 Identities = 19/127 (14%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 132 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGIL 190
           +        + ++   +    KV  + P + +  A   + +   S+  V+    K  G++
Sbjct: 1   MTWEHNEFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLI 60

Query: 191 TSKDILMRVISQNL----PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 246
           +   ++  ++          ++  VE+VM  N     +D  ++ A+ ++ +  F  + V 
Sbjct: 61  SMTMMMDAILGLERIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVE 118

Query: 247 DRDGDVV 253
           + DG   
Sbjct: 119 NDDGYFA 125

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 10/116 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIAREL----NLEETPVSKVMTRNPTFVLS 56
           +      A+ + D++  L G+++   +   ++  E      LE   V +VM RN   +  
Sbjct: 39  LTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVEEVMNRNIPRLRL 98

Query: 57  DTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKGK 108
           D   ++A+  +V   F  + V  ++G    +    ++ K L   + R     + G+
Sbjct: 99  DDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQLHRPNGGRKLGR 152

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 211 VEKVMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT 268
           V+  + P  + A +     +  AL ++    +  +PV+D    +  ++ +  +  A +  
Sbjct: 13  VKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGL 72

Query: 269 EIL 271
           E +
Sbjct: 73  ERI 75

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 23/191 (12%), Positives = 50/191 (26%), Gaps = 47/191 (24%)

Query: 32  IARELN-LEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE----VI 84
           +  E N   +  V   +        V        AL  + +  +  +PV++       +I
Sbjct: 1   MTWEHNEFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLI 60

Query: 85  ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSL 144
           ++  +   +           E  K                            E M     
Sbjct: 61  SMTMMMDAILGLERIEFERLETMKV--------------------------EEVM----- 89

Query: 145 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ-- 202
                    +  +   D+++ A   ++       V   +    GI T +++L ++  Q  
Sbjct: 90  ------NRNIPRLRLDDSLMKAVGLIVNHPFV-CVENDDGYFAGIFTRREVLKQLNKQLH 142

Query: 203 NLPADSTLVEK 213
                  L  K
Sbjct: 143 RPNGGRKLGRK 153

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 83.8 bits (207), Expect = 8e-19
 Identities = 37/289 (12%), Positives = 84/289 (29%), Gaps = 63/289 (21%)

Query: 1   MAARRVDALLLTDS-NALLCGILTDKDI--------------ATRVIARELNLEETPVSK 45
           +    V A  L DS      G+LT  D                  +   ++        +
Sbjct: 63  LVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQ 122

Query: 46  VMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE-----VIALLDIAKCLYDAIARM 100
              +    +  +    +A+  +++ K   LPV++        ++    I K L   I   
Sbjct: 123 DSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEF 182

Query: 101 ERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPT 160
            +     K++                      E L+   +             +  +  T
Sbjct: 183 PKPEFMSKSL----------------------EELQIGTYAN-----------IAMVRTT 209

Query: 161 DTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLP------ADSTLVEK 213
             V +A    ++ R+S+  VV  + +   I +  D++     +           +     
Sbjct: 210 TPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRS 269

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 259
                     +   +   ++ + + +   L VVD    V  +V   D++
Sbjct: 270 HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDIL 318

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 68.1 bits (166), Expect = 2e-13
 Identities = 43/225 (19%), Positives = 75/225 (33%), Gaps = 36/225 (16%)

Query: 53  FVLSDTLAVEALQKMVQGKFRHLPVV--ENGEVIALLDIAKCLYDAIARMERAAEKGKAI 110
              +     +A   +V    R  P+   +    + +L I     D I  +       K+ 
Sbjct: 49  VFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT----DFINIL---HRYYKSA 101

Query: 111 AAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKM 170
              +  +E+H         T+ E   +  F+P           +V ISP  ++  A   +
Sbjct: 102 LVQIYELEEHK------IETWREVYLQDSFKP-----------LVCISPNASLFDAVSSL 144

Query: 171 LELRLSSAVV--TVENKPRGILTSKDILMRV--------ISQNLPADSTLVEKVMTPNPE 220
           +  ++    V          ILT K IL  +          + +      ++     N  
Sbjct: 145 IRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIA 204

Query: 221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265
                TP+  AL I    +   LPVVD  G VVD+     + + A
Sbjct: 205 MVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLA 249

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 65.4 bits (159), Expect = 2e-12
 Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 17/154 (11%)

Query: 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV--TVENK 185
           P +        M       +IP  SK+V    +  V  A   ++   + +A +  + +  
Sbjct: 21  PESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQS 80

Query: 186 PRGILTSKDILMR--------------VISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231
             G+LT  D +                +    +     +  +       C + +  + DA
Sbjct: 81  FVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDA 140

Query: 232 LHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHA 264
           +  +   K   LPV+D + G+ + ++    I   
Sbjct: 141 VSSLIRNKIHRLPVIDPESGNTLYILTHKRILKF 174

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 35/221 (15%), Positives = 63/221 (28%), Gaps = 49/221 (22%)

Query: 1   MAARRVDALLLTDS-NALLCGILTDKDIATRVIARELNLEETP--------VSKVMTRNP 51
           +   ++  L + D  +     ILT K I   +        +          +      N 
Sbjct: 144 LIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANI 203

Query: 52  TFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKG 107
             V + T    AL   VQ +   LPVV E G V+ +    D+     +            
Sbjct: 204 AMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNN------- 256

Query: 108 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMAT 167
                            +    T     R   F             V+     +T+    
Sbjct: 257 -----------------LDVSVTKALQHRSHYFEG-----------VLKCYLHETLEAII 288

Query: 168 KKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPAD 207
            +++E  +    VV   +  +GI++  DIL  ++       
Sbjct: 289 NRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLTGGEKK 329

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 79.2 bits (196), Expect = 1e-18
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 210
             V+T    + V+ A +KML+ ++SS  V+  ENK  GI+T+ DI   +I      ++T 
Sbjct: 16  KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETT- 74

Query: 211 VEKVMTPNPECATIDTPIVDALHIM-----HDGKFLHLPVVDRDGDVV 253
           +  VMT +      D  I++A+  M      +     LPVVD++  +V
Sbjct: 75  IGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLV 122

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 10/106 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M   ++ +L + D    + GI+T  DI   +I  +  LE T +  VMT++   +  D   
Sbjct: 34  MLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLE-TTIGDVMTKDVITIHEDASI 92

Query: 61  VEALQKMVQG-----KFRHLPVV-ENGEVIALL---DIAKCLYDAI 97
           +EA++KM            LPVV +N +++ ++   DI + +   I
Sbjct: 93  LEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISKII 138

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 50.3 bits (121), Expect = 4e-08
 Identities = 37/170 (21%), Positives = 55/170 (32%), Gaps = 52/170 (30%)

Query: 37  NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKC 92
            L+   V  VMT+N          VEA +KM++ K   LPV+ +  +VI ++   DI   
Sbjct: 4   TLKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGY- 62

Query: 93  LYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKS 152
                            +   +  V                     M             
Sbjct: 63  ---------NLIRDKYTLETTIGDV---------------------M-----------TK 81

Query: 153 KVVTISPTDTVLMATKKMLELRLSSA------VVTVENKPRGILTSKDIL 196
            V+TI    ++L A KKM              VV   NK  GI++  DI+
Sbjct: 82  DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDII 131

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIH-IT 262
            +  V+ VMT N   A     +V+A   M   K   LPV+D +  V+ +V   D+ + + 
Sbjct: 6   KNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLI 65

Query: 263 HAAVATEILLDQIM 276
                 E  +  +M
Sbjct: 66  RDKYTLETTIGDVM 79

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 79.4 bits (196), Expect = 2e-18
 Identities = 18/130 (13%), Positives = 49/130 (37%), Gaps = 7/130 (5%)

Query: 132 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGIL 190
           I    +++   ++   + E  KV  +   + +  A   + +   ++  V+    +  G++
Sbjct: 4   ISLQSDQLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLI 63

Query: 191 TSKDILMRVISQNL----PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 246
            +  I+  +           D   VE+VM  +     I+ PI+    ++ +  F  + V 
Sbjct: 64  GTNMIMNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVE 121

Query: 247 DRDGDVVDVV 256
           + +     + 
Sbjct: 122 NDEQVFEGIF 131

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 10/110 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIAREL----NLEETPVSKVMTRNPTFVLS 56
           +      A+ + D +  L G++    I   +   E      L++  V +VM  +   +  
Sbjct: 42  LTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVMLTDIPRLHI 101

Query: 57  DTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMER 102
           +   ++    ++   F  + V  +      +     + K L   I  + +
Sbjct: 102 NDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHIRSLNK 149

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 211 VEKVMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT 268
           V + M    + A +     +  AL ++    +  +PV+D    +  ++    I ++    
Sbjct: 16  VGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGL 75

Query: 269 EILLDQIMRQ 278
           E +  + + Q
Sbjct: 76  ERIEFEKLDQ 85

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 74.9 bits (185), Expect = 4e-17
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 210
              +T     +++ A K +++  ++   +V    K  GI+TS DI   +           
Sbjct: 9   KPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKT----- 63

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
           +E++MT N   A  D P+      M       +PVVD    VV
Sbjct: 64  IEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVV 106

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 59.8 bits (146), Expect = 9e-12
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 9/99 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           +    ++ L + D +  L GI+T  DIA     + L   +  + ++MTRN      D   
Sbjct: 27  LIKHNINHLPIVDEHGKLVGIITSWDIA-----KALAQNKKTIEEIMTRNVITAHEDEPV 81

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYD 95
                KM +     +PVV +   V+ ++   DI++    
Sbjct: 82  DHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG 120

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 49.8 bits (120), Expect = 3e-08
 Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 52/168 (30%)

Query: 41  TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDA 96
           T V  ++++ P    S+   +EA + +++    HLP+V E+G+++ ++   DIAK    A
Sbjct: 1   TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAK----A 56

Query: 97  IARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVT 156
           +A+ ++                               T+ E M              V+T
Sbjct: 57  LAQNKK-------------------------------TIEEIM-----------TRNVIT 74

Query: 157 ISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQN 203
               + V     KM +  +S   VV    +  GI+TS+DI  R+    
Sbjct: 75  AHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDIS-RLFGGK 121

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 49.0 bits (118), Expect = 8e-08
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
           TLV+ +++  P  A  +  I++A  I+      HLP+VD  G +V
Sbjct: 1   TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLV 45

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 74.8 bits (184), Expect = 6e-16
 Identities = 41/287 (14%), Positives = 87/287 (30%), Gaps = 82/287 (28%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
               +V +  + +    L GI++ K I        +N +E  ++ ++ R+   V  +   
Sbjct: 27  FKKYKVRSFPVVNKEGKLVGIISVKRIL-------VNPDEEQLAMLVKRDVPVVKENDTL 79

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKGKAIAAAVEG 116
            +A + M++  +R + VV   G+ + +L   DI +  +    + +    + +        
Sbjct: 80  KKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYK--GVEIEPYYQRY-- 135

Query: 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLS 176
                                                V  +     +  A K +L     
Sbjct: 136 -------------------------------------VSIVWEGTPLKAALKALLLSNSM 158

Query: 177 SAVV-TVENKPRGILTSKDIL-----------------------------MRVISQNLPA 206
           +  V   E    GI+   D+L                             +      L  
Sbjct: 159 ALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQL 218

Query: 207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
            +  V ++MT +   AT    + +    M       LPV+  +GD++
Sbjct: 219 PNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLI 265

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 73.7 bits (181), Expect = 2e-15
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 8/101 (7%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
            VTI+   T   A +   + ++ S  VV  E K  GI++ K IL       +  D   + 
Sbjct: 11  PVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRIL-------VNPDEEQLA 63

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
            ++  +      +  +  A  +M +  +  + VVD  G  V
Sbjct: 64  MLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPV 104

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 68.3 bits (167), Expect = 1e-13
 Identities = 36/201 (17%), Positives = 61/201 (30%), Gaps = 17/201 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M       +++ DS     GILT  DI  R  A+    +   +     R  + V   T  
Sbjct: 86  MLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQRYVSIVWEGTPL 145

Query: 61  VEALQKMVQGKFRHLPVV-ENGE---VIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116
             AL+ ++      LPVV   G    ++   D+ +                      +E 
Sbjct: 146 KAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILES 205

Query: 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLS 176
                           + + E M              V+  +P  TV     KM +  + 
Sbjct: 206 HPTLLFEKFELQLP-NKPVAEIM-----------TRDVIVATPHMTVHEVALKMAKYSIE 253

Query: 177 SA-VVTVENKPRGILTSKDIL 196
              V+  E    G++   D+L
Sbjct: 254 QLPVIRGEGDLIGLIRDFDLL 274

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 67.9 bits (166), Expect = 2e-13
 Identities = 50/225 (22%), Positives = 79/225 (35%), Gaps = 56/225 (24%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIA 98
           V  +MT+NP  +        AL+   + K R  PVV + G+++ ++    I     +   
Sbjct: 3   VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDE--- 59

Query: 99  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 158
                                             E L   + R            V  + 
Sbjct: 60  ----------------------------------EQLAMLVKRD-----------VPVVK 74

Query: 159 PTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP 217
             DT+  A K MLE       VV  + KP GILT  DI+ R  +++       +E     
Sbjct: 75  ENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQR 134

Query: 218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD---VVDVVDVI 259
                   TP+  AL  +     + LPVVD +G+   +VD  D++
Sbjct: 135 YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLL 179

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 72.2 bits (178), Expect = 6e-16
 Identities = 17/118 (14%), Positives = 41/118 (34%), Gaps = 10/118 (8%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 210
             + +   T  V+   + + + R+SS  ++        +  + D+L  +        S  
Sbjct: 19  DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS 78

Query: 211 VEKVMT------PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 259
           V + +             T +  +   +  +   +     VVD  G +V V+   D++
Sbjct: 79  VGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 136

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 52.2 bits (126), Expect = 8e-09
 Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 10/103 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTF------V 54
           +   RV ++ + D N  L  +    D+   +     N     V + + R           
Sbjct: 37  LTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTC 96

Query: 55  LSDTLAVEALQKMVQGKFRHLPVV-ENGE---VIALLDIAKCL 93
             +      +  + + +     VV + G    V+ L DI K +
Sbjct: 97  TKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 139

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 41/174 (23%)

Query: 34  RELNLEETPVSKV---MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLDI 89
           RE +  + P+  +      N       T  ++ +Q + QG+   +P++ ENG +I +   
Sbjct: 1   RETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVY-- 58

Query: 90  AKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIP 149
               YD +  ++                           N    ++ E +          
Sbjct: 59  --EAYDVLGLIKGGIY-----------------------NDLSLSVGEAL-----MRRSD 88

Query: 150 EKSKVVTISPTDTVLMATKKMLEL---RLSSAVVTVENKPRGILTSKDILMRVI 200
           +   V T +  D +      + +    R    VV    +  G+LT  DIL  ++
Sbjct: 89  DFEGVYTCTKNDKLSTIMDNIRKARVHRF--FVVDDVGRLVGVLTLSDILKYIL 140

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 44.8 bits (107), Expect = 3e-06
 Identities = 11/54 (20%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHI 261
           +  +   N +   + TP++D + ++  G+   +P++D +G +++V    DV+ +
Sbjct: 13  LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 66

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 72.8 bits (179), Expect = 8e-16
 Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 27/130 (20%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLP---- 205
           +  +  + P+ +V  A + ++E +++   V+       G+++  D+L             
Sbjct: 13  RQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDT 72

Query: 206 ----------------------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHL 243
                                     +V  +MTP+P      T + DA  ++ + KF  L
Sbjct: 73  NLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRL 132

Query: 244 PVVDRDGDVV 253
           PVVD DG ++
Sbjct: 133 PVVDADGKLI 142

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 53.2 bits (128), Expect = 7e-09
 Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 20/182 (10%)

Query: 43  VSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDAIAR 99
           V   MT  +N   V   T   +AL+ +V+ K   LPV+ +N  ++ ++      YD +A 
Sbjct: 6   VGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVV----SDYDLLAL 61

Query: 100 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPE--KSKVVTI 157
              +                                 +++   +   ++ +      + +
Sbjct: 62  DSISGRSQND----------TNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVV 111

Query: 158 SPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216
             +  +  A + +LE +     VV  + K  GILT  +++   +     ADS        
Sbjct: 112 RDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNADSISGRSQND 171

Query: 217 PN 218
            N
Sbjct: 172 TN 173

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 34/135 (25%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELN----------------------- 37
           +  ++V  L + D N  L G+++D D+         +                       
Sbjct: 32  LVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKL 91

Query: 38  ---LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIA 90
                   V  +MT +P  V   T   +A + +++ KFR LPVV  +G++I +L   ++ 
Sbjct: 92  ISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVV 151

Query: 91  KCLYDAIARMERAAE 105
           +    A  +++R A+
Sbjct: 152 R----AALQIKRNAD 162

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 72.0 bits (177), Expect = 1e-15
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 9/110 (8%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL-------MRVISQN 203
               T+  T T+  A   M  L +    +V    K  GI++ +D+L        R    +
Sbjct: 13  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGD 72

Query: 204 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
             A  T + +VM  +         + ++   M   K   LPVV     +V
Sbjct: 73  SLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLV 121

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDI-------ATRVIARELNLEETPVSKVMTRNPTF 53
           M A  +  + + D+N  L GI++ +D+         R    +    ETP+ +VM  + T 
Sbjct: 31  MEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVMHTDVTS 90

Query: 54  VLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIARMERAA 104
           V       E+   M + K   LPVV    ++ ++   D      + +   E + 
Sbjct: 91  VAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINLLELQEESE 144

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 27/180 (15%), Positives = 61/180 (33%), Gaps = 38/180 (21%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIA 98
           V  +MTR+P  +L      +A   M     RH+P+V  N +++ ++   D+      ++ 
Sbjct: 7   VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQ 66

Query: 99  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 158
           R  +                                L E M            + V +++
Sbjct: 67  RSAQGDSLAFET-----------------------PLFEVM-----------HTDVTSVA 92

Query: 159 PTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN 218
           P   +  +   M + ++    V  ++   GI+T  D +   I+     + +  +++    
Sbjct: 93  PQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINLLELQEESEPDELDEEQ 152

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            VE +MT +P        + DA H+M      H+P+VD +  ++ +V
Sbjct: 6   KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIV 52

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 16/117 (13%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLP----- 205
            K   +     +     ++LE  ++    V  +NK  G++    +L              
Sbjct: 24  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKE 83

Query: 206 ---------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
                      +    ++M  +P    +DTP+ +AL +M D     +PVVD  G++V
Sbjct: 84  ELIRSSMKRLIAKNASEIML-DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIV 139

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 25/161 (15%), Positives = 57/161 (35%), Gaps = 27/161 (16%)

Query: 38  LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDA 96
           ++   V K+++  PT V  DT   E + ++++        V  + +++ ++ +   L  +
Sbjct: 13  MKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVS 72

Query: 97  IARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVT 156
                    K + I ++++ +                   E M               V 
Sbjct: 73  GFHFFGFIPKEELIRSSMKRLIAK-------------NASEIM------------LDPVY 107

Query: 157 ISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL 196
           +     +  A K M++  +    VV  + +  G L S +IL
Sbjct: 108 VHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 148

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 19/112 (16%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIAREL--------------NLEETPVSKV 46
           +    V   +    +  L G++    +                        L     S++
Sbjct: 42  ILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEI 101

Query: 47  MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLY 94
           M      V  DT   EAL+ M+    + +PVV E GE++  L   +I   L+
Sbjct: 102 MLDPVY-VHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALW 152

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           V K+++  P     DTPI + +  + +        V RD  +V ++
Sbjct: 18  VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMI 63

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 69.4 bits (171), Expect = 7e-15
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 8   ALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKM 67
              + D +  + GI TD D+  RV    +++ +  ++ VMTR    +   TLAV+AL  M
Sbjct: 63  MTAICDDDMNIIGIFTDGDLR-RVFDTGVDMRDASIADVMTRGGIRIRPGTLAVDALNLM 121

Query: 68  VQGKFRHLPVVENGEVIALLDI 89
                  + V +   ++ ++ +
Sbjct: 122 QSRHITCVLVADGDHLLGVVHM 143

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 55.2 bits (134), Expect = 9e-10
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 157 ISPTDTVLMATKKMLELRL-SSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVM 215
           +    T+  A  ++    L  +A+   +    GI T  D L RV    +      +  VM
Sbjct: 43  VGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGD-LRRVFDTGVDMRDASIADVM 101

Query: 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI 261
           T         T  VDAL++M       + V D D     ++ V+H+
Sbjct: 102 TRGGIRIRPGTLAVDALNLMQSRHITCVLVADGDH----LLGVVHM 143

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 70.5 bits (173), Expect = 8e-15
 Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
               +  + TV     +M + + +   V   E   RG++  +D+L            + V
Sbjct: 22  DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL-------DLDSSV 74

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
              ++        +  I  AL +  + +  +LPVVD +  + 
Sbjct: 75  FNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLK 116

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 11/102 (10%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M   + +  ++ D      G++  +D+            ++ V   ++    FV  +   
Sbjct: 39  MRQYQTNECIVKDREGHFRGVVNKEDLLDL-------DLDSSVFNKVSLPDFFVHEEDNI 91

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIA 98
             AL   ++ +  +LPVV E   +   +   D  + L +A+A
Sbjct: 92  THALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEALA 133

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 23/166 (13%), Positives = 43/166 (25%), Gaps = 53/166 (31%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIA 98
           V K +T++   V       E L +M Q +     V    G    ++   D+     D   
Sbjct: 15  VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLD--- 71

Query: 99  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 158
                                              ++  ++                 + 
Sbjct: 72  ----------------------------------SSVFNKV-----------SLPDFFVH 86

Query: 159 PTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQN 203
             D +  A    LE +     VV  E + +G ++  D L  +I   
Sbjct: 87  EEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL 132

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            V+K +T +         + + LH M   +     V DR+G    VV
Sbjct: 14  KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVV 60

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 71.1 bits (174), Expect = 2e-14
 Identities = 34/279 (12%), Positives = 78/279 (27%), Gaps = 50/279 (17%)

Query: 1   MAARRVDALLLTDS-NALLCGILTDKDIATRV---------------IARELNLEETPVS 44
           +    + +  L DS  +   G+LT  D    +               +  +   +     
Sbjct: 58  LLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERAL 117

Query: 45  KVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAA 104
            V   +   +       EA  KM++ +   +P+++  E      +   L         A 
Sbjct: 118 GVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVAL 177

Query: 105 EKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVL 164
              +                              +  P     I  +  + +   T  V+
Sbjct: 178 NCRE---------------------------THFLKIPIGDLNIITQDNMKSCQMTTPVI 210

Query: 165 MATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMT------P 217
              + + + R+SS  ++        +  + D+L  +        S  V + +        
Sbjct: 211 DVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFE 270

Query: 218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                T +  +   +  +   +     VVD  G +V V+
Sbjct: 271 GVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVL 309

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 61.9 bits (150), Expect = 3e-11
 Identities = 34/214 (15%), Positives = 72/214 (33%), Gaps = 36/214 (16%)

Query: 56  SDTLAVEALQKMVQGKFRHLPVV--ENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA 113
           +  L  ++L  ++Q      P+   +      LL       D I  +             
Sbjct: 47  TSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTT----DFINVI------------- 89

Query: 114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL 173
                  +  S       ++ L+    +     +  ++    +I P+  +  A  KMLE 
Sbjct: 90  ------QYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLES 143

Query: 174 RLSSAVV------TVENKPRGILTSKDILMRVIS-----QNLPADSTLVEKVMTPNPECA 222
           R     +      T       +LT   IL  V         L      +  +   N +  
Sbjct: 144 RSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSC 203

Query: 223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            + TP++D + ++  G+   +P++D +G +++V 
Sbjct: 204 QMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVY 237

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 66.7 bits (163), Expect = 4e-14
 Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 2/106 (1%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
           ++     +   +   A +++     + A V    +  G++    +L     +  P     
Sbjct: 12  ETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLE--GRKGWPTVKEK 69

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           + + +            + D L  +   K   +P+ D DG    VV
Sbjct: 70  LGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVV 115

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 10/85 (11%), Positives = 25/85 (29%), Gaps = 4/85 (4%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           +AA       + D    L G++    +      +     +  + + +             
Sbjct: 31  LAASGCACAPVLDGERYL-GMVHLSRLLE--GRKGWPTVKEKLGEELLETVRSYRPGEQL 87

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVI 84
            + L  +   K   +P+  E+G   
Sbjct: 88  FDNLISVAAAKCSVVPLADEDGRYE 112

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 14/155 (9%), Positives = 41/155 (26%), Gaps = 41/155 (26%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 102
            S +   +           +A +++        PV++    + ++ ++      +   + 
Sbjct: 7   FSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLS----RLLEGRKG 62

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
                                         E L E +              V +  P + 
Sbjct: 63  WPTVK-------------------------EKLGEELLE-----------TVRSYRPGEQ 86

Query: 163 VLMATKKMLELRLSS-AVVTVENKPRGILTSKDIL 196
           +      +   + S   +   + +  G+++ K IL
Sbjct: 87  LFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRIL 121

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 61.8 bits (150), Expect = 3e-11
 Identities = 30/258 (11%), Positives = 76/258 (29%), Gaps = 38/258 (14%)

Query: 6   VDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQ 65
           V+ +     ++     + + D    +  RE+  +       +     +V      ++A  
Sbjct: 78  VNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIG----AIPPETIYVHPMHSLMDACL 133

Query: 66  KMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSI 125
            M + + R +P+++                     E  +E   ++      + K    + 
Sbjct: 134 AMSKSRARRIPLIDV------------------DGETGSEMIVSVLT-QYRILKFISMNC 174

Query: 126 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS-AVVTVEN 184
                    L     + ++ T       + T S    V    K + E  +S+  +V  E 
Sbjct: 175 KETAMLRVPLN----QMTIGTWSN----LATASMETKVYDVIKMLAEKNISAVPIVNSEG 226

Query: 185 KPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE------CATIDTPIVDALHIMHDG 238
               +  S D++  +   +       V + +   P              +      +   
Sbjct: 227 TLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHS 286

Query: 239 KFLHLPVVDRDGDVVDVV 256
           +   L VVD +  +  ++
Sbjct: 287 RVHRLFVVDENLKLEGIL 304

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 59.1 bits (143), Expect = 3e-10
 Identities = 37/224 (16%), Positives = 76/224 (33%), Gaps = 38/224 (16%)

Query: 56  SDTLAVEALQKMVQGKFRHLPVV--ENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA 113
                  +L  +        P+   E  +   LL +A    D +  ++   +      A 
Sbjct: 39  VTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMA----DFVNVIKYYYQSSSFPEAI 94

Query: 114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL 173
            E                I+  R    R     I     + + + P  +++ A   M + 
Sbjct: 95  AE----------------IDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKS 138

Query: 174 R------LSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKV------MTPNPEC 221
           R      +     T       +LT   IL + IS N    + L   +         N   
Sbjct: 139 RARRIPLIDVDGETGSEMIVSVLTQYRIL-KFISMNCKETAMLRVPLNQMTIGTWSNLAT 197

Query: 222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHIT 262
           A+++T + D + ++ +     +P+V+ +G +++V    DV+H+ 
Sbjct: 198 ASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLI 241

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 51.8 bits (124), Expect = 7e-08
 Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 20/140 (14%)

Query: 147 IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV--TVENKPRGILTSKDILMRVI---- 200
           ++P   +++    T  V  +   +    + SA +  +  NK  G+LT  D +  +     
Sbjct: 27  VLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQ 86

Query: 201 SQNLPADSTLVEK--------------VMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 246
           S + P     ++K               + P          ++DA   M   +   +P++
Sbjct: 87  SSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLI 146

Query: 247 DRDGDVVDVVDVIHITHAAV 266
           D DG+    + V  +T   +
Sbjct: 147 DVDGETGSEMIVSVLTQYRI 166

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 20/125 (16%), Positives = 45/125 (36%), Gaps = 12/125 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFV------ 54
           +A + + A+ + +S   L  +    D+   +   + +  +  V + + + P         
Sbjct: 211 LAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTC 270

Query: 55  -LSDTLAVEALQKMVQGKFRHLPVV-ENGE---VIALLDIAKCLYDAIARMERAAEKGKA 109
             +D L       +   +   L VV EN +   +++L DI   +           E+   
Sbjct: 271 RATDRLD-GIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTTTPGVPEQTDN 329

Query: 110 IAAAV 114
             +AV
Sbjct: 330 FESAV 334

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 59.3 bits (143), Expect = 4e-11
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 29/185 (15%)

Query: 30  RVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDI 89
           R++ R +      V   M  + T +  DT   E ++ +        P+VE+ E   L+ I
Sbjct: 2   RILGRNIGSHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGI 61

Query: 90  AKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIP 149
            +                                ++           ++  +  L+   P
Sbjct: 62  VQ--------------------------RAQLVQALQAEPPSRAPGHQQCLQDILARGCP 95

Query: 150 EKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ--NLPAD 207
            +   +T+    T+  A      L L S  VT   +  G ++  ++  + IS   N PA 
Sbjct: 96  TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGCVSWVEMK-KAISNLTNPPAP 154

Query: 208 STLVE 212
              +E
Sbjct: 155 KEFLE 159

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 13/110 (11%), Positives = 28/110 (25%), Gaps = 12/110 (10%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVV---TVENKPRGILTSKDIL---------MRV 199
             + T++    +    K +    ++   +   T      GI+    ++            
Sbjct: 21  HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAP 80

Query: 200 ISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD 249
             Q    D         P       +T +  A ++        L V  R 
Sbjct: 81  GHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRG 130

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 41.5 bits (97), Expect = 7e-05
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 198 RVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR--DGDVVDV 255
           R++ +N+ +    VE  M  +      DTP+ + + ++        P+V+      +V +
Sbjct: 2   RILGRNIGSHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGI 61

Query: 256 VDVIHITHA 264
           V    +  A
Sbjct: 62  VQRAQLVQA 70

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 58.4 bits (140), Expect = 3e-10
 Identities = 25/225 (11%), Positives = 60/225 (26%), Gaps = 11/225 (4%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE----VIALLDIAKCLYDAIA 98
           V  +       +  +     A   M     + +PV +       +++  +I     D   
Sbjct: 9   VEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWD 68

Query: 99  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 158
               A               +    +        + +   M   SL   I E    +   
Sbjct: 69  SNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGD 128

Query: 159 PTDTVLMATKK-------MLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
             +      +              S  ++ +  K    + +        S+ +     + 
Sbjct: 129 RAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTASRLIVQSLPVD 188

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
             +   N    + D  + D    M + ++ + PV+D +  VV  +
Sbjct: 189 YVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSI 233

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 45.3 bits (106), Expect = 6e-06
 Identities = 11/54 (20%), Positives = 22/54 (40%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
           VE +          +  +  A +IM D     +PV D +  ++ ++   +IT  
Sbjct: 9   VEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITAT 62

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 56.0 bits (136), Expect = 4e-09
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 8/96 (8%)

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKV 214
           +TI+P +TV  A   M +  +    V  + K  GI+T KD  +         +  LV+++
Sbjct: 104 ITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKD--IAAR------EGKLVKEL 155

Query: 215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG 250
           MT           + +AL IM + +   LPVVD  G
Sbjct: 156 MTKEVITVPESIEVEEALKIMIENRIDRLPVVDERG 191

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 11/102 (10%)

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPR----GILTSKDILMRVISQNLPADSTL 210
             + P  T             ++  VT +  P     G++T +D    +         T 
Sbjct: 108 SNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRD--YPIDLTQT---ETK 162

Query: 211 VEKVMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDG 250
           V  +MTP  +  T   DT + +A  I+ + K   LP++D D 
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQ 204

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 52.9 bits (128), Expect = 4e-08
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 155 VTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 213
           VT+ P  T+    +       +   VVT  N+  GI+T +D  +R ++      +  V  
Sbjct: 100 VTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRD--VRFVTD----LTKSVAA 153

Query: 214 VMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDG 250
           VMTP    AT+       +    MH  +   + VV+ + 
Sbjct: 154 VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEF 192

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 51.7 bits (125), Expect = 9e-08
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 155 VTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 213
           +T++P  TV  A   M E ++    VV  E +  G+LT++D  +R         S  ++ 
Sbjct: 106 ITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRD--VRFEKN----LSKKIKD 159

Query: 214 VMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDG 250
           +MTP  +      D  +  A  I+H  +   LP+V +D 
Sbjct: 160 LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDN 198

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 10/105 (9%)

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPR----GILTSKDILMRVISQNLPADSTL 210
           V +SP+ TV    +  +    S   +T          GI+TS+D  +  +++     +TL
Sbjct: 119 VVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRD--IDFLAEK--DHTTL 174

Query: 211 VEKVMTPNPECAT--IDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
           + +VMTP  E         + +A  I+   K   LP+V+   ++V
Sbjct: 175 LSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELV 219

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 10/100 (10%)

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVT---VENKPRGILTSKDILMRVISQNLPADSTLV 211
             ++P   V  A + M   R+S   +       K  GI+T++D  MR IS      +  +
Sbjct: 101 FFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRD--MRFISD----YNAPI 154

Query: 212 EKVMTPNP-ECATIDTPIVDALHIMHDGKFLHLPVVDRDG 250
            + MT      A + T +  A  I+H+ +   LP+VD  G
Sbjct: 155 SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSG 194

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 10/100 (10%)

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVT---VENKPRGILTSKDILMRVISQNLPADSTLV 211
             ++P   V  A   M + R+S   V     E K  GI+T++D  MR I       S  +
Sbjct: 124 FFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRD--MRFIQD----YSIKI 177

Query: 212 EKVMTPNP-ECATIDTPIVDALHIMHDGKFLHLPVVDRDG 250
             VMT      A + T + +A  I+   K   LP+VD +G
Sbjct: 178 SDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNG 217

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A Length = 473

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 13/88 (14%)

Query: 179 VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDG 238
           VV  + + +G+L+ +D+++           T V ++M P       DT   +   +M D 
Sbjct: 196 VVDEKGRLKGVLSLRDLIVA-------DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADY 248

Query: 239 KFLHLPVVDRDGDVV------DVVDVIH 260
            F  LPVVD +G +V      DV+DV+ 
Sbjct: 249 DFTVLPVVDEEGRLVGIVTVDDVLDVLE 276

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 13/113 (11%), Positives = 36/113 (31%), Gaps = 7/113 (6%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN--KPRGILTSKDILMRVISQNLPADS 208
            +  V +    TV  A   M + R+    V  ++     G++  + ++ +++S N     
Sbjct: 392 PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSD 451

Query: 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI 261
               K +            +     ++         V+    +    V++  +
Sbjct: 452 P-AIKALNKRVIRLNESEILGKLARVLEVDPS----VLILGKNPAGKVELKAL 499

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 Length = 286

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 13/88 (14%)

Query: 179 VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDG 238
           VV  EN   G+++ +D+++         D TL+  ++        +     D    + D 
Sbjct: 178 VVDQENHLVGVISLRDLIVN-------DDDTLIADILNERVISVHVGDDQEDVAQTIRDY 230

Query: 239 KFLHLPVVDRDGDVV------DVVDVIH 260
            FL +PV D D  ++      D++DVI 
Sbjct: 231 DFLAVPVTDYDDHLLGIVTVDDIIDVID 258

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} Length = 205

 Score = 44.5 bits (106), Expect = 9e-06
 Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 13/88 (14%)

Query: 179 VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDG 238
           +V   +K  G +   DI               +  +++ +    T +T ++DA   +   
Sbjct: 93  IVDEADKYLGTVRRYDIFKH-------EPHEPLISLLSEDSRALTANTTLLDAAEAIEHS 145

Query: 239 KFLHLPVVDRDGDVV------DVVDVIH 260
           + + LPV+D  G+++          ++ 
Sbjct: 146 REIELPVIDDAGELIGRVTLRAATALVR 173

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A Length = 278

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 13/88 (14%)

Query: 179 VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDG 238
           VV  + + +G+L+ +D+++           T V ++M P       DT   +   +M D 
Sbjct: 176 VVDEKGRLKGVLSLRDLIVA-------DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADY 228

Query: 239 KFLHLPVVDRDGDVV------DVVDVIH 260
            F  LPVVD +G +V      DV+DV+ 
Sbjct: 229 DFTVLPVVDEEGRLVGIVTVDDVLDVLE 256

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 29/162 (17%), Positives = 53/162 (32%), Gaps = 18/162 (11%)

Query: 41  TPVSKVMTRNP-----TFVLSDTLAV-EALQKMVQGKFRHLPVVENGEVIALLDIAKCLY 94
           T    VM         T +  D++ V +    + +  +   PVV + E   L+       
Sbjct: 11  TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFV-LRR 69

Query: 95  DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV 154
           D I  +E A +K   + +            +         LR  +               
Sbjct: 70  DLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLS-----------P 118

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
            T++    + +      +L L   +VT   +  GI+T KD+L
Sbjct: 119 FTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVL 160

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 7/74 (9%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIHITHA 264
           +  ++  +P   T  TP+   + I          V   +G ++      DV+  I     
Sbjct: 110 LRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMAN 168

Query: 265 AVATEILLDQIMRQ 278
                IL ++ +  
Sbjct: 169 QDPDSILFNEFLEV 182

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 7/73 (9%)

Query: 33  ARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DI 89
                     +  ++  +P  V   T     +    +   R   V  NG ++ ++   D+
Sbjct: 100 LPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDV 159

Query: 90  AKCLYDAIARMER 102
            K     IA+M  
Sbjct: 160 LK----HIAQMAN 168

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 45/292 (15%), Positives = 90/292 (30%), Gaps = 83/292 (28%)

Query: 17  LLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLP 76
           +   IL+ ++I        + + +  VS       T  L  TL   + Q+ +  KF    
Sbjct: 41  MPKSILSKEEI------DHIIMSKDAVSG------TLRLFWTL--LSKQEEMVQKF---- 82

Query: 77  VVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLR 136
            VE      L    K L   I       +        +E  ++ +  +       +   R
Sbjct: 83  -VEE----VLRINYKFLMSPIK--TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS--R 133

Query: 137 ERMF---RPSLSTIIPE------------KSKVVTISPTDTVLMATKKMLELRLSSAV-- 179
            + +   R +L  + P             K+  V +     V ++ K  ++ ++   +  
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKT-WVALD----VCLSYK--VQCKMDFKIFW 186

Query: 180 VTV--ENKPRGILTSKDILMRVISQNL--PADSTLVEKVMT--------------PNPEC 221
           + +   N P  +L     L+  I  N    +D +   K+                P   C
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 222 ATI-----DTPIVDALHIMHDG--KFLHLPVVDRDGDVVDVVDVIHITHAAV 266
             +     +    +A     +   K L   +  R   V D +     TH ++
Sbjct: 247 LLVLLNVQNAKAWNAF----NLSCKIL---LTTRFKQVTDFLSAATTTHISL 291

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 27/175 (15%), Positives = 56/175 (32%), Gaps = 12/175 (6%)

Query: 34  RELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRH-LPVVENG----EVIAL 86
           R     E    ++M        +  D+        + +   R   PV++        I+ 
Sbjct: 446 RRDRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISR 505

Query: 87  LDIAKCLYDAIARMERAAEKGKAI-----AAAVEGVEKHWGTSISGPNTFIETLRERMFR 141
            +I   L   +  +       + +     A   E +E     + SG ++        +  
Sbjct: 506 KEIVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLE 565

Query: 142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
           P+ S ++P     + ++    V       + L  S   VT   K  GI+  +D+ 
Sbjct: 566 PTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTERGKLVGIVEREDVA 620

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	281
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	100.0
3ddj_A	296	CBS domain-containing protein; structural genomics	100.0
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	100.0
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	100.0
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.97
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.97
3ddj_A	296	CBS domain-containing protein; structural genomics	99.95
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.94
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.93
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.92
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.92
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.9
4esy_A	170	CBS domain containing membrane protein; structural	99.86
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.86
4esy_A	170	CBS domain containing membrane protein; structural	99.85
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.84
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.84
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.83
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.83
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.83
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.82
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.82
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.82
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.82
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.82
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.82
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.82
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.81
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.81
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.81
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.81
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.81
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.81
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.81
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.81
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.8
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.8
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.8
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.8
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.8
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.8
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.79
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.79
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.79
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.79
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.79
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.79
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.79
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.79
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.79
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.78
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.78
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.78
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.78
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.78
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.78
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.78
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.78
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.78
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.78
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.77
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.77
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.77
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.77
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.77
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.76
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.76
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.76
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.76
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.76
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.75
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.75
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.75
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.75
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.74
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.74
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.74
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.74
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.74
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.74
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.73
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.73
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.73
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.72
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.72
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.72
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.72
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.72
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.71
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.71
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.71
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.71
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.7
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.69
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.69
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.69
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.67
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.66
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.65
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.65
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.64
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.62
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.59
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.57
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.57
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.56
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.56
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.54
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.5
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.49
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.48
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.48
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.48
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.47
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.46
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.45
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.44
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.44
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.43
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.39
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.35
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.32
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.29
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.28
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.22
3fio_A	70	A cystathionine beta-synthase domain protein fused	99.15
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.09
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.64

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=100.00  E-value=3.3e-34  Score=241.23  Aligned_cols=225  Identities=18%  Similarity=0.237  Sum_probs=189.0

Q ss_pred             CCCCCccEEEEEcC-CCcEEEEEehHHHHHHHHHh-------cC------CCCcccccccccCCCeEecCCchHHHHHHH
Q 023512            1 MAARRVDALLLTDS-NALLCGILTDKDIATRVIAR-------EL------NLEETPVSKVMTRNPTFVLSDTLAVEALQK   66 (281)
Q Consensus         1 m~~~~~~~~~v~~~-~~~~~Gi~t~~d~~~~~~~~-------~~------~~~~~~v~dim~~~~~~v~~~~~l~~a~~~   66 (281)
                      |.+++++++||+|+ +++++|++|.+|+++.+...       ..      ...+.+++++|.++++++++++++.+|++.
T Consensus        30 m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~  109 (280)
T 3kh5_A           30 MNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIET  109 (280)
T ss_dssp             HHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTSBGGGTSBCSCCCEETTCBHHHHHHH
T ss_pred             HHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhhhHHHhcCCCCEEECCCCCHHHHHHH
Confidence            56789999999997 78999999999998644110       00      112568999999999999999999999999


Q ss_pred             hHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCcc
Q 023512           67 MVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLS  145 (281)
Q Consensus        67 m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  145 (281)
                      |.+++++++||+|+ |+++|+++..|+++.....                                      .....++.
T Consensus       110 ~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~--------------------------------------~~~~~~v~  151 (280)
T 3kh5_A          110 FLTKNVGGAPIVNDENQLISLITERDVIRALLDK--------------------------------------IDENEVID  151 (280)
T ss_dssp             HHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGG--------------------------------------SCTTCBSG
T ss_pred             HHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhc--------------------------------------CCCCCCHH
Confidence            99999999999985 9999999999987642110                                      11223688


Q ss_pred             ccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcC----------CCCccccccccc
Q 023512          146 TIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN----------LPADSTLVEKVM  215 (281)
Q Consensus       146 ~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~----------~~~~~~~v~~~~  215 (281)
                      ++|.  +++.++++++++.++++.|.+++++++||+++|+++|++|.+|+++.+....          ......++.++|
T Consensus       152 ~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m  229 (280)
T 3kh5_A          152 DYIT--RDVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEIM  229 (280)
T ss_dssp             GGCB--CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHHHCBHHHHS
T ss_pred             HHhC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHhhhhhhhhhcccchhhhhCCcHHHHh
Confidence            8887  7789999999999999999999999999999999999999999985443211          001245789999


Q ss_pred             cCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhh
Q 023512          216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (281)
Q Consensus       216 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~  265 (281)
                      +++++++++++++.+|++.|.+++++++||+|++|+++|+||.+||+++.
T Consensus       230 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~l  279 (280)
T 3kh5_A          230 KRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF  279 (280)
T ss_dssp             BSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGGG
T ss_pred             cCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHhh
Confidence            99999999999999999999999999999999889999999999999875

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=100.00  E-value=7.8e-34  Score=241.17  Aligned_cols=226  Identities=19%  Similarity=0.199  Sum_probs=191.5

Q ss_pred             CCCCCccEEEEEcCCCcEEEEEehHHHHHHHHHhc---------CCCCcccccccccCCCeEecCCchHHHHHHHhHhCC
Q 023512            1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARE---------LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGK   71 (281)
Q Consensus         1 m~~~~~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~---------~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~   71 (281)
                      |.+++++++||++  ++++|++|.+|+++.+....         ....+.+++++|+++++++.+++++.+|+++|.+++
T Consensus        46 m~~~~~~~~~V~d--~~l~GivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~  123 (296)
T 3ddj_A           46 INEGGIGRIIVAN--EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRN  123 (296)
T ss_dssp             TTGGGCCEEEEES--SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHT
T ss_pred             HHHCCCceEEEEC--CeEEEEEeHHHHHHHhcccccccccchhhHHHhcccHHHhccCCCEEEcCCCCHHHHHHHHHHcC
Confidence            7889999999999  89999999999986542111         123367899999999999999999999999999999


Q ss_pred             CcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccC
Q 023512           72 FRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPE  150 (281)
Q Consensus        72 ~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~  150 (281)
                      ++++||+|+ ++++|+++..|++....                                       ......++.++|. 
T Consensus       124 ~~~lpVvd~~~~lvGivt~~dl~~~~~---------------------------------------~~~~~~~v~~~m~-  163 (296)
T 3ddj_A          124 FGSLPVVDINDKPVGIVTEREFLLLYK---------------------------------------DLDEIFPVKVFMS-  163 (296)
T ss_dssp             CSEEEEECTTSCEEEEEEHHHHGGGGG---------------------------------------GSCCCCBHHHHSB-
T ss_pred             CCEEEEEcCCCcEEEEEeHHHHHHhhh---------------------------------------cccccccHHHhhc-
Confidence            999999985 89999999999875310                                       0112336778886 


Q ss_pred             CCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCC-----CCccccccccccCCCeeeeC
Q 023512          151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-----PADSTLVEKVMTPNPECATI  224 (281)
Q Consensus       151 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~-----~~~~~~v~~~~~~~~~~v~~  224 (281)
                       +++.++++++++.++++.|.+++++++||++ +|+++|++|..|+++.+.....     .....++.++|+++++++.+
T Consensus       164 -~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~  242 (296)
T 3ddj_A          164 -TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDE  242 (296)
T ss_dssp             -CSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHSBCCCCBCCT
T ss_pred             -CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCHHHHhCCCCeEECC
Confidence             7789999999999999999999999999999 8999999999999855442110     01245899999999999999


Q ss_pred             CCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhchH
Q 023512          225 DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATE  269 (281)
Q Consensus       225 ~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~~  269 (281)
                      ++++.++++.|.+++.+++||+|++|+++|+||.+||+++.....
T Consensus       243 ~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~~  287 (296)
T 3ddj_A          243 LASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHIL  287 (296)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999977653

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=100.00  E-value=3.6e-32  Score=229.15  Aligned_cols=221  Identities=19%  Similarity=0.249  Sum_probs=176.0

Q ss_pred             CCCCCccEEEEEcCCCcEEEEEehHHHHHHHHHhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC
Q 023512            1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN   80 (281)
Q Consensus         1 m~~~~~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~   80 (281)
                      |.+++++++||+|++|+++|++|.+|+++.+       .+.+++++|.+++.++++++++.+|++.|.+++++.+||+|+
T Consensus        27 ~~~~~~~~~pV~d~~~~~~Giv~~~dl~~~~-------~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~   99 (282)
T 2yzq_A           27 FKKYKVRSFPVVNKEGKLVGIISVKRILVNP-------DEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS   99 (282)
T ss_dssp             -----CCEEEEECTTCCEEEEEESSCC-----------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             HHHcCCCeEEEEcCCCcEEEEEEHHHHHhhh-------ccCCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            5678999999999889999999999997432       367899999999999999999999999999999999999996


Q ss_pred             -CeEEEEEehHHHHH-HHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeC
Q 023512           81 -GEVIALLDIAKCLY-DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS  158 (281)
Q Consensus        81 -~~~vGvi~~~dll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~  158 (281)
                       |+++|+++..|+++ .....                                     ......++.++|.  .++.+++
T Consensus       100 ~~~~~Giit~~di~~~~~~~~-------------------------------------~~~~~~~v~~~m~--~~~~~v~  140 (282)
T 2yzq_A          100 KGKPVGILTVGDIIRRYFAKS-------------------------------------EKYKGVEIEPYYQ--RYVSIVW  140 (282)
T ss_dssp             TSCEEEEEEHHHHHHHTTTTC-------------------------------------SGGGGCBSTTTSB--SCCCCEE
T ss_pred             CCEEEEEEEHHHHHHHHHhcc-------------------------------------CCcccCcHHHHhC--CCCEEEC
Confidence             89999999999976 31100                                     0011335778886  7789999


Q ss_pred             CCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH------HHHH------hc-----------------CCCCcc
Q 023512          159 PTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL------MRVI------SQ-----------------NLPADS  208 (281)
Q Consensus       159 ~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~------~~~~------~~-----------------~~~~~~  208 (281)
                      +++++.++++.|.+++++++||++ +|+++|++|..|++      +.+.      ..                 ......
T Consensus       141 ~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (282)
T 2yzq_A          141 EGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPN  220 (282)
T ss_dssp             TTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC--------------------------------CC
T ss_pred             CCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhcc
Confidence            999999999999999999999998 88999999999997      3221      00                 011234


Q ss_pred             ccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       209 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      .+++++|++++.++.+++++.+|++.|.+++++++||+|++|+++|+||.+||+++...
T Consensus       221 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~~~  279 (282)
T 2yzq_A          221 KPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLVK  279 (282)
T ss_dssp             CBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGCC
T ss_pred             CCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHHHh
Confidence            68999999999999999999999999999999999999977899999999999998664

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=100.00  E-value=6.9e-32  Score=231.93  Aligned_cols=230  Identities=15%  Similarity=0.172  Sum_probs=182.8

Q ss_pred             CCCCCccEEEEEcCC-CcEEEEEehHHHHHHHHH---hcC------CCCccccc------ccccCCCeEecCCchHHHHH
Q 023512            1 MAARRVDALLLTDSN-ALLCGILTDKDIATRVIA---REL------NLEETPVS------KVMTRNPTFVLSDTLAVEAL   64 (281)
Q Consensus         1 m~~~~~~~~~v~~~~-~~~~Gi~t~~d~~~~~~~---~~~------~~~~~~v~------dim~~~~~~v~~~~~l~~a~   64 (281)
                      |.++++.++||+|++ ++++|++|.+|++..+..   ...      ......+.      ++|.++++++++++++.+|+
T Consensus        58 m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~  137 (323)
T 3t4n_C           58 LLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEAC  137 (323)
T ss_dssp             HHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHH
T ss_pred             HHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHH
Confidence            567899999999975 499999999999865431   111      11112233      44578999999999999999


Q ss_pred             HHhHhCCCcEeeEeeC-Ce-----EEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHh
Q 023512           65 QKMVQGKFRHLPVVEN-GE-----VIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRER  138 (281)
Q Consensus        65 ~~m~~~~~~~~pV~d~-~~-----~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (281)
                      +.|.+++++++||+++ +.     ++|+++..|++.........                                  ..
T Consensus       138 ~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~----------------------------------~~  183 (323)
T 3t4n_C          138 LKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE----------------------------------TH  183 (323)
T ss_dssp             HHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG----------------------------------GG
T ss_pred             HHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc----------------------------------hh
Confidence            9999999999999985 43     99999999998764322110                                  11


Q ss_pred             hcCCCcccc---ccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcccccccc
Q 023512          139 MFRPSLSTI---IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKV  214 (281)
Q Consensus       139 ~~~~~v~~~---m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~  214 (281)
                      ....++.++   |.  +++.++++++++.++++.|.+++++++||++ +|+++|+||.+|+++.+..........++.++
T Consensus       184 ~~~~~v~~~~~~m~--~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~  261 (323)
T 3t4n_C          184 FLKIPIGDLNIITQ--DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEA  261 (323)
T ss_dssp             GCCSBGGGTTCSBC--TTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTHHHHTTSBHHHH
T ss_pred             hhhCcHHHcCCCCC--CCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhchhhhccCCHHHH
Confidence            233467777   65  7899999999999999999999999999999 89999999999998544432212234589999


Q ss_pred             ccC------CCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512          215 MTP------NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (281)
Q Consensus       215 ~~~------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~  266 (281)
                      |++      +++++.+++++.++++.|.+++++++||+|++|+++|+||.+||+++..
T Consensus       262 m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~  319 (323)
T 3t4n_C          262 LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  319 (323)
T ss_dssp             GGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             HhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHH
Confidence            987      7899999999999999999999999999998999999999999999864

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.97  E-value=2.6e-30  Score=223.08  Aligned_cols=232  Identities=15%  Similarity=0.179  Sum_probs=184.5

Q ss_pred             CCCCCccEEEEEcCC-CcEEEEEehHHHHHHHHHh------cC---CCCcccccc-------cccCCC--eEecCCchHH
Q 023512            1 MAARRVDALLLTDSN-ALLCGILTDKDIATRVIAR------EL---NLEETPVSK-------VMTRNP--TFVLSDTLAV   61 (281)
Q Consensus         1 m~~~~~~~~~v~~~~-~~~~Gi~t~~d~~~~~~~~------~~---~~~~~~v~d-------im~~~~--~~v~~~~~l~   61 (281)
                      |.+++++++||++++ ++++|++|.+|++..+...      ..   .+...++++       +|.+++  +++.+++++.
T Consensus        50 ~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~  129 (334)
T 2qrd_G           50 LTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLM  129 (334)
T ss_dssp             HHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHH
T ss_pred             HHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCccHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHH
Confidence            456789999999975 7999999999998654321      11   111334443       366677  9999999999


Q ss_pred             HHHHHhHhCCCcEeeEeeC-C-e----EEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHH
Q 023512           62 EALQKMVQGKFRHLPVVEN-G-E----VIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETL  135 (281)
Q Consensus        62 ~a~~~m~~~~~~~~pV~d~-~-~----~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (281)
                      +|++.|.+++++++||+++ + +    ++|+++..|++.........                                 
T Consensus       130 ~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~---------------------------------  176 (334)
T 2qrd_G          130 DACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKE---------------------------------  176 (334)
T ss_dssp             HHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGG---------------------------------
T ss_pred             HHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccc---------------------------------
Confidence            9999999999999999985 3 4    99999999998764321000                                 


Q ss_pred             HHhhcCCCccc---cccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccc
Q 023512          136 RERMFRPSLST---IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLV  211 (281)
Q Consensus       136 ~~~~~~~~v~~---~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v  211 (281)
                       ......++.+   +|.  +++.++++++++.++++.|.+++.+++||++ +|+++|+||.+|+++.+..........++
T Consensus       177 -~~~~~~~v~~l~~~m~--~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v  253 (334)
T 2qrd_G          177 -TAMLRVPLNQMTIGTW--SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSV  253 (334)
T ss_dssp             -GGGCCCBGGGSSCSBC--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTTSCGGGGGSBH
T ss_pred             -hhhhhCcHHHhCCccc--CCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhccccccccCcH
Confidence             0112345666   466  7789999999999999999999999999999 78999999999998544433222335688


Q ss_pred             cccccC------CCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          212 EKVMTP------NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       212 ~~~~~~------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      .++|.+      +++++.+++++.++++.|.+++.+++||+|++|+++|+||..||+++....
T Consensus       254 ~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~~~  316 (334)
T 2qrd_G          254 GEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYD  316 (334)
T ss_dssp             HHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHHSC
T ss_pred             HHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHHhc
Confidence            999984      899999999999999999999999999999889999999999999986544

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.97  E-value=7.7e-30  Score=219.80  Aligned_cols=235  Identities=17%  Similarity=0.199  Sum_probs=182.9

Q ss_pred             CCCCCccEEEEEcCC-CcEEEEEehHHHHHHHHHhc-------CCCCcccc-------cccccCCCeEecCCchHHHHHH
Q 023512            1 MAARRVDALLLTDSN-ALLCGILTDKDIATRVIARE-------LNLEETPV-------SKVMTRNPTFVLSDTLAVEALQ   65 (281)
Q Consensus         1 m~~~~~~~~~v~~~~-~~~~Gi~t~~d~~~~~~~~~-------~~~~~~~v-------~dim~~~~~~v~~~~~l~~a~~   65 (281)
                      |.+++++++||++++ ++++|++|.+|+++.+....       ..+.+.++       .++|.++++++++++++.+|++
T Consensus        63 ~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~  142 (330)
T 2v8q_E           63 LVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVS  142 (330)
T ss_dssp             HHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHH
T ss_pred             HHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccccchhHHhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHH
Confidence            456789999999986 68999999999986553211       11222233       4678999999999999999999


Q ss_pred             HhHhCCCcEeeEee--CCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCC
Q 023512           66 KMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPS  143 (281)
Q Consensus        66 ~m~~~~~~~~pV~d--~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (281)
                      +|.+++++.+||+|  +|+++|+++..|++++.......                       .+...        ....+
T Consensus       143 ~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~-----------------------~~~~~--------~~~~~  191 (330)
T 2v8q_E          143 SLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITE-----------------------FPKPE--------FMSKS  191 (330)
T ss_dssp             HHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCS-----------------------SSCCG--------GGGSB
T ss_pred             HHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhc-----------------------cCchh--------hhcCC
Confidence            99999999999998  58999999999998753221000                       00000        00112


Q ss_pred             cccc--ccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccc-----
Q 023512          144 LSTI--IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVM-----  215 (281)
Q Consensus       144 v~~~--m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~-----  215 (281)
                      +.++  |. ..++.++++++++.++++.|.+++.+++||++ +|+++|+||.+|+++.+..........++.++|     
T Consensus       192 v~~~~v~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~~~~~~  270 (330)
T 2v8q_E          192 LEELQIGT-YANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSH  270 (330)
T ss_dssp             HHHHTCSB-CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCS
T ss_pred             HHHhcccC-cCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHhccccccccCcHHHHHhcccc
Confidence            2232  22 15688899999999999999999999999999 899999999999984443332222345788888     


Q ss_pred             -cCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          216 -TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       216 -~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                       .++++++++++++.++++.|.+++.+++||+|++|+++|+||..||+++...
T Consensus       271 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~  323 (330)
T 2v8q_E          271 YFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVL  323 (330)
T ss_dssp             CCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHS
T ss_pred             ccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Confidence             4789999999999999999999999999999988999999999999998654

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.95  E-value=8.1e-27  Score=197.88  Aligned_cols=201  Identities=19%  Similarity=0.269  Sum_probs=167.3

Q ss_pred             HhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHH
Q 023512           33 ARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAA  112 (281)
Q Consensus        33 ~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~  112 (281)
                      ..+.+....+|+|+|+++++++++++|+.+|++.|.+++++++||++ ++++|++|..|++.........          
T Consensus        12 ~~~~~~~~~~V~dim~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-~~l~GivT~~Di~~~~~~~~~~----------   80 (296)
T 3ddj_A           12 HENLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN-EKIEGLLTTRDLLSTVESYCKD----------   80 (296)
T ss_dssp             --CCTTCCSSGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES-SSEEEEEEHHHHHGGGTTCC------------
T ss_pred             hhhhhhcccCHHHhccCCCcEECCCccHHHHHHHHHHCCCceEEEEC-CeEEEEEeHHHHHHHhcccccc----------
Confidence            34567778999999999999999999999999999999999999999 9999999999998643110000          


Q ss_pred             HHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeee
Q 023512          113 AVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILT  191 (281)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt  191 (281)
                                      ..+...+. .....++.++|.  +++.++.+++++.++++.|.+++++++||++ +|+++|++|
T Consensus        81 ----------------~~~~~~~~-~~~~~~v~~im~--~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt  141 (296)
T 3ddj_A           81 ----------------SCSQGDLY-HISTTPIIDYMT--PNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVT  141 (296)
T ss_dssp             -----------------CCHHHHH-HHHTSBGGGTSE--ESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEE
T ss_pred             ----------------cccchhhH-HHhcccHHHhcc--CCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEe
Confidence                            00111111 122456899998  6788999999999999999999999999998 889999999


Q ss_pred             HHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512          192 SKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (281)
Q Consensus       192 ~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~  266 (281)
                      .+|++ ..+....  ...++.++|.++++++++++++.++++.|.+++.+++||+|++|+++|+||..|++++..
T Consensus       142 ~~dl~-~~~~~~~--~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          142 EREFL-LLYKDLD--EIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             HHHHG-GGGGGSC--CCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             HHHHH-Hhhhccc--ccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence            99997 4333222  234899999999999999999999999999999999999999999999999999998865

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.94  E-value=1.6e-25  Score=188.09  Aligned_cols=197  Identities=18%  Similarity=0.277  Sum_probs=158.6

Q ss_pred             cccccCCCeEecCCchHHHHHHHhHhCCCcEeeEee--CCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhh
Q 023512           44 SKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHW  121 (281)
Q Consensus        44 ~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d--~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (281)
                      +.+|+++++++++++|+.+|+++|.+++++++||++  +++++|++|..|++........        .. .....    
T Consensus         7 ~~i~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~--------~~-~~~~~----   73 (280)
T 3kh5_A            7 KIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSK--------YN-LIREK----   73 (280)
T ss_dssp             GTSCCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGG--------GH-HHHTT----
T ss_pred             HHhcCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccch--------hh-hhhhc----
Confidence            446778999999999999999999999999999998  4999999999999875311000        00 00000    


Q ss_pred             CCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHH
Q 023512          122 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI  200 (281)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~  200 (281)
                           ....    +. .....++.++|.  +++.++++++++.++++.|.+++++++||++ +|+++|++|.+|+++.+.
T Consensus        74 -----~~~~----~~-~~~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~  141 (280)
T 3kh5_A           74 -----HERN----FL-AAINEPVREIME--ENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALL  141 (280)
T ss_dssp             -----STTC----HH-HHTTSBGGGTSB--CSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHG
T ss_pred             -----cccc----hh-HHhhhhHHHhcC--CCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHh
Confidence                 0000    00 112457899998  6899999999999999999999999999998 899999999999984444


Q ss_pred             hcCCCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          201 SQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       201 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      .. .. ...++.++|.+++.++++++++.++++.|.+++.+++||+ ++|+++|+||.+|++++....
T Consensus       142 ~~-~~-~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~~~  206 (280)
T 3kh5_A          142 DK-ID-ENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLGSD  206 (280)
T ss_dssp             GG-SC-TTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHTSH
T ss_pred             hc-CC-CCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHhhh
Confidence            33 22 2347899999999999999999999999999999999999 589999999999999987654

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.93  E-value=1.2e-25  Score=189.24  Aligned_cols=178  Identities=27%  Similarity=0.383  Sum_probs=139.5

Q ss_pred             ccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhh
Q 023512           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (281)
Q Consensus        41 ~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d-~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (281)
                      ++++++|+++++++++++++.+|+++|.+++++++||++ +|+++|+++..|++...                       
T Consensus         1 m~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~~~~~Giv~~~dl~~~~-----------------------   57 (282)
T 2yzq_A            1 MRVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNP-----------------------   57 (282)
T ss_dssp             CBHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC---------------------------
T ss_pred             CchHHhccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhhh-----------------------
Confidence            478999999999999999999999999999999999999 59999999999987431                       


Q ss_pred             hhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHH
Q 023512          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  198 (281)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~  198 (281)
                                          ...++.++|.  +++.++++++++.++++.|.+++.+++||++ +|+++|++|..|++++
T Consensus        58 --------------------~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~  115 (282)
T 2yzq_A           58 --------------------DEEQLAMLVK--RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRR  115 (282)
T ss_dssp             --------------------------CCCB--SCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             --------------------ccCCHHHHcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHH
Confidence                                1134777886  5688999999999999999999999999999 7899999999999841


Q ss_pred             HHhcCCCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          199 VISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       199 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      .+.........++.++|.++++++++++++.++++.|.+++.+++||+|++|+++|++|..|++.
T Consensus       116 ~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~  180 (282)
T 2yzq_A          116 YFAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLR  180 (282)
T ss_dssp             TTTTCSGGGGCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGG
T ss_pred             HHhccCCcccCcHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhh
Confidence            44432222345789999999999999999999999999999999999998899999999999993

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.92  E-value=4.7e-24  Score=183.04  Aligned_cols=207  Identities=15%  Similarity=0.224  Sum_probs=158.4

Q ss_pred             CcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHH
Q 023512           39 EETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (281)
Q Consensus        39 ~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~  114 (281)
                      .+.++.|+|.+  ++++++.++|+.+|++.|.+++++++||+++  ++++|+++..|++.........    ..... .+
T Consensus        28 ~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~----~~~~~-~l  102 (323)
T 3t4n_C           28 NSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSN----PDKFE-LV  102 (323)
T ss_dssp             HHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHC----GGGGG-GG
T ss_pred             HhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcC----cchhH-HH
Confidence            57799999985  6789999999999999999999999999995  5999999999998765432211    00000 00


Q ss_pred             hhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCe-----eeE
Q 023512          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENK-----PRG  188 (281)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~-----~~G  188 (281)
                      .             ......+.+.+   ....+|.  .++.++++++++.++++.|.+++++++||++ ++.     ++|
T Consensus       103 ~-------------~~~~~~v~~i~---~~~~~~~--~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~G  164 (323)
T 3t4n_C          103 D-------------KLQLDGLKDIE---RALGVDQ--LDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVS  164 (323)
T ss_dssp             G-------------GCBHHHHHHHH---HHTTC------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEE
T ss_pred             H-------------HHHHHHHHHHH---HHhCCCC--CCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEE
Confidence            0             00001111111   1233444  7789999999999999999999999999999 554     999


Q ss_pred             eeeHHHHHHHHHhcC--CCCcccccccc---ccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHH
Q 023512          189 ILTSKDILMRVISQN--LPADSTLVEKV---MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (281)
Q Consensus       189 ivt~~di~~~~~~~~--~~~~~~~v~~~---~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~  263 (281)
                      ++|.+|+++.+....  ......++.++   |.++++++.+++++.++++.|.+++.+++||+|++|+++|+||.+|+++
T Consensus       165 ivt~~di~~~l~~~~~~~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  244 (323)
T 3t4n_C          165 VLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLG  244 (323)
T ss_dssp             EEEHHHHHHHHHHHCGGGGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHH
T ss_pred             EecHHHHHHHHHhcCCchhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHH
Confidence            999999986554322  11224578899   8899999999999999999999999999999998999999999999999


Q ss_pred             hhhch
Q 023512          264 AAVAT  268 (281)
Q Consensus       264 ~~~~~  268 (281)
                      +....
T Consensus       245 ~~~~~  249 (323)
T 3t4n_C          245 LIKGG  249 (323)
T ss_dssp             HHHTT
T ss_pred             HHhhc
Confidence            86554

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.92  E-value=5.2e-24  Score=183.31  Aligned_cols=204  Identities=21%  Similarity=0.201  Sum_probs=158.0

Q ss_pred             Ccccccccc--cCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHH
Q 023512           39 EETPVSKVM--TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (281)
Q Consensus        39 ~~~~v~dim--~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~  114 (281)
                      .+.+++|+|  +++++++++++++.+|++.|.+++++++||+++  ++++|+++..|++................+    
T Consensus        33 ~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~~~~~~l----  108 (330)
T 2v8q_E           33 KSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYEL----  108 (330)
T ss_dssp             HHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCG----
T ss_pred             HcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccccchhHH----
Confidence            366999999  778999999999999999999999999999985  689999999999876543221110000000    


Q ss_pred             hhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe--CCeeeEeeeH
Q 023512          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTS  192 (281)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~  192 (281)
                                  . ......+..     .+.++|.  +++.++++++++.++++.|.+++++++||++  +|+++|++|.
T Consensus       109 ------------~-~~~~~~~~~-----~~~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~  168 (330)
T 2v8q_E          109 ------------E-EHKIETWRE-----VYLQDSF--KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTH  168 (330)
T ss_dssp             ------------G-GCBHHHHHH-----HHSSSSC--CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECH
T ss_pred             ------------h-hccHHHHHH-----HHhhccc--CCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcH
Confidence                        0 000111111     2446676  7799999999999999999999999999998  6899999999


Q ss_pred             HHHHHHHHhcCCC-----Ccccccccc--cc-CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          193 KDILMRVISQNLP-----ADSTLVEKV--MT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       193 ~di~~~~~~~~~~-----~~~~~v~~~--~~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      +|+++.+......     ....++.++  |. ++++++.+++++.++++.|.+++.+++||+|++|+++|+||..|++++
T Consensus       169 ~dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~  248 (330)
T 2v8q_E          169 KRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINL  248 (330)
T ss_dssp             HHHHHHHHHHSCSSSCCGGGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGG
T ss_pred             HHHHHHHHHHhhccCchhhhcCCHHHhcccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHH
Confidence            9998555432211     112345554  44 788999999999999999999999999999988999999999999987


Q ss_pred             hh
Q 023512          265 AV  266 (281)
Q Consensus       265 ~~  266 (281)
                      ..
T Consensus       249 ~~  250 (330)
T 2v8q_E          249 AA  250 (330)
T ss_dssp             GG
T ss_pred             Hh
Confidence            65

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.90  E-value=2.2e-22  Score=173.44  Aligned_cols=207  Identities=14%  Similarity=0.173  Sum_probs=154.9

Q ss_pred             cccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 023512           40 ETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (281)
Q Consensus        40 ~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (281)
                      +.+++|+|++  +++++++++|+.+|++.|.+++++++||+++  ++++|+++..|++........... ......    
T Consensus        21 ~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~-~~~~~~----   95 (334)
T 2qrd_G           21 SRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSS-FPEAIA----   95 (334)
T ss_dssp             HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCS-CGGGGG----
T ss_pred             cCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccC-CccHHH----
Confidence            5799999975  5788999999999999999999999999985  699999999999875433211000 000000    


Q ss_pred             hHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-Ce----eeEe
Q 023512          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NK----PRGI  189 (281)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~----~~Gi  189 (281)
                      .      ..    ......+.+..     .++|....+..++.+++++.++++.|.+++.+++||++ + +.    ++|+
T Consensus        96 ~------~~----~~~~~~i~~~l-----~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Gi  160 (334)
T 2qrd_G           96 E------ID----KFRLLGLREVE-----RKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSV  160 (334)
T ss_dssp             G------GG----SCBHHHHHHHH-----HHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEE
T ss_pred             H------Hh----hhchhhHHHHH-----HhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEE
Confidence            0      00    00011111111     23454212238999999999999999999999999998 4 34    9999


Q ss_pred             eeHHHHHHHHHhcCC--CCccccccc---cccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          190 LTSKDILMRVISQNL--PADSTLVEK---VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       190 vt~~di~~~~~~~~~--~~~~~~v~~---~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      +|.+|+++.+.....  .....++.+   +|.++++++++++++.++++.|.+++.+++||+|++|+++|+||..|++++
T Consensus       161 vt~~dl~~~~~~~~~~~~~~~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~  240 (334)
T 2qrd_G          161 LTQYRILKFISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHL  240 (334)
T ss_dssp             EEHHHHHHHHHHHCGGGGGCCCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHH
T ss_pred             eeHHHHHHHHHhhccchhhhhCcHHHhCCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHH
Confidence            999999855543211  112347788   488899999999999999999999999999999988999999999999987


Q ss_pred             hh
Q 023512          265 AV  266 (281)
Q Consensus       265 ~~  266 (281)
                      ..
T Consensus       241 ~~  242 (334)
T 2qrd_G          241 IQ  242 (334)
T ss_dssp             HT
T ss_pred             hh
Confidence            54

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.86  E-value=5.1e-22  Score=154.76  Aligned_cols=146  Identities=21%  Similarity=0.296  Sum_probs=113.9

Q ss_pred             CCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 023512           38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (281)
Q Consensus        38 ~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (281)
                      +.+.+|+|+|+++++++++++|+.+|+++|.+++++++||+|+ |+++|+||..|+++.............         
T Consensus        15 l~~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~---------   85 (170)
T 4esy_A           15 IRQVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEI---------   85 (170)
T ss_dssp             HHTSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHH---------
T ss_pred             HcCCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhh---------
Confidence            3467999999999999999999999999999999999999985 999999999999764322111000000         


Q ss_pred             HhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (281)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~  196 (281)
                          ..  ...+..............++.++|+  +++.++++++++.+|++.|.+++++++||+++|+++|+||..|++
T Consensus        86 ----~~--~~~~~~~~~~~~~~~~~~~v~~im~--~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGivt~~Dil  157 (170)
T 4esy_A           86 ----LS--RAIPAPEVEHLFETGRKLTASAVMT--QPVVTAAPEDSVGSIADQMRRHGIHRIPVVQDGVPVGIVTRRDLL  157 (170)
T ss_dssp             ----HT--TTSCHHHHHHHHHHHTTCBHHHHCB--CCSCCBCTTSBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHT
T ss_pred             ----hh--hccchhhHHhhhccccccchhhhcc--cCcccCCcchhHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHH
Confidence                00  0000112233344456678999998  889999999999999999999999999999999999999999998


Q ss_pred             HHHH
Q 023512          197 MRVI  200 (281)
Q Consensus       197 ~~~~  200 (281)
                      +.++
T Consensus       158 ~~l~  161 (170)
T 4esy_A          158 KLLL  161 (170)
T ss_dssp             TTSC
T ss_pred             HHHH
Confidence            4443

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.86  E-value=2.8e-21  Score=148.37  Aligned_cols=124  Identities=20%  Similarity=0.257  Sum_probs=109.5

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCC---CccccccccccC
Q 023512          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP---ADSTLVEKVMTP  217 (281)
Q Consensus       142 ~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~---~~~~~v~~~~~~  217 (281)
                      .++.++|+|.+++.++++++|+.+|++.|.+++++++||+| +|+++|++|.+|+++.+......   ....++.++|.+
T Consensus        15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~im~~   94 (156)
T 3k6e_A           15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTKT   94 (156)
T ss_dssp             TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGTCBC
T ss_pred             ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHHhhcC
Confidence            46889999888999999999999999999999999999999 79999999999998666554322   134589999999


Q ss_pred             CCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       218 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      +++++++++++.+|++.|.+++  .+||+|++|+++|+||.+||+++...
T Consensus        95 ~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~  142 (156)
T 3k6e_A           95 DVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNA  142 (156)
T ss_dssp             SCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             CceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHH
Confidence            9999999999999999999876  49999999999999999999998754

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.85  E-value=2.5e-21  Score=150.80  Aligned_cols=128  Identities=24%  Similarity=0.253  Sum_probs=110.2

Q ss_pred             hhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcC-------------
Q 023512          138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-------------  203 (281)
Q Consensus       138 ~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~-------------  203 (281)
                      .+...++.++|+  +++.++++++|+.+|++.|.+++++++||+| +|+++|+||.+|+++......             
T Consensus        14 ~l~~~~V~diM~--~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~   91 (170)
T 4esy_A           14 AIRQVPIRDILT--SPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIP   91 (170)
T ss_dssp             HHHTSBGGGGCC--SCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSC
T ss_pred             HHcCCCHHHhcC--CCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccc
Confidence            445668999998  7899999999999999999999999999999 899999999999974321110             


Q ss_pred             --------CCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          204 --------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       204 --------~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                              ......+++++|+++++++.+++++.+|+++|.+++++++||+| +|+++|+||.+||+++....
T Consensus        92 ~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l~~~  163 (170)
T 4esy_A           92 APEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLLLLE  163 (170)
T ss_dssp             HHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTSCCC
T ss_pred             hhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHHHhc
Confidence                    00113478999999999999999999999999999999999998 69999999999999986543

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.84  E-value=2.7e-20  Score=153.52  Aligned_cols=218  Identities=17%  Similarity=0.200  Sum_probs=140.4

Q ss_pred             cccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHH-----HHHHhhhhHHHH
Q 023512           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARME-----RAAEKGKAIAAA  113 (281)
Q Consensus        40 ~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~-----~~~~~~~~~~~~  113 (281)
                      ..+|+++|+++++++++++++.+|+++|.+++++++||+|+ |+++|+++..|+++.......     ........+...
T Consensus         6 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v~~~   85 (245)
T 3l2b_A            6 KLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNILDT   85 (245)
T ss_dssp             CCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHHHHH
T ss_pred             cCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHHHHH
Confidence            67999999999999999999999999999999999999996 999999999999876542210     000011111111


Q ss_pred             HhhHhhhhCCCCCChhhHHHHH-HHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCC--------
Q 023512          114 VEGVEKHWGTSISGPNTFIETL-RERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN--------  184 (281)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~--------  184 (281)
                      ..+... .+....  ......+ ...+....+.+.+.+ .++..+..   -.++...+.+.+.++++++++.        
T Consensus        86 l~~~~l-~~~~~~--~~~~g~~~i~a~~~~~~~~~~~~-~~ivIvgd---r~~~~~~~i~~~~~~liit~~~~~~~~v~~  158 (245)
T 3l2b_A           86 LSAEAQ-NINEER--KVFPGKVVVAAMQAESLKEFISE-GDIAIAGD---RAEIQAELIELKVSLLIVTGGHTPSKEIIE  158 (245)
T ss_dssp             TTCEEE-ECCTTC--CCCCSCEEECCSCGGGGGGTCCT-TCEEEECS---CHHHHHHHHHTTCSEEEECTTCCCCHHHHH
T ss_pred             hCCEEE-eccCCc--ceeeeeEEEEeCChHHHHhcCCC-CCEEEECC---CHHHHHHHHHcCCCEEEECCCCCCCHHHHH
Confidence            111110 000000  0000000 000011122333332 44444432   3778888888999999888632        


Q ss_pred             -----eeeEeeeHHHHHHHHHhcCCCCcccccccccc-CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEh
Q 023512          185 -----KPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDV  258 (281)
Q Consensus       185 -----~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~  258 (281)
                           .+..+.|..|.+. .....  ....+++++|+ +++.++++++++.++++.|.+++++++||+|++|+++|+||.
T Consensus       159 ~a~~~~~~~i~t~~d~~~-~~~~~--~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~  235 (245)
T 3l2b_A          159 LAKKNNITVITTPHDSFT-ASRLI--VQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIAR  235 (245)
T ss_dssp             HHHHHTCEEEECSSCHHH-HHHHG--GGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEC
T ss_pred             HHHHcCCeEEEeCCChHH-HHHHH--hcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEH
Confidence                 1346677777653 22211  12457999999 899999999999999999999999999999999999999999


Q ss_pred             hhHHHhhhc
Q 023512          259 IHITHAAVA  267 (281)
Q Consensus       259 ~di~~~~~~  267 (281)
                      +|++++..+
T Consensus       236 ~dll~~~~~  244 (245)
T 3l2b_A          236 FHLISTHKK  244 (245)
T ss_dssp             C--------
T ss_pred             HHhhchhhc
Confidence            999987653

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.84  E-value=4.6e-20  Score=140.24  Aligned_cols=123  Identities=19%  Similarity=0.206  Sum_probs=110.5

Q ss_pred             hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHHHHHHhcCCCCcccccccccc
Q 023512          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (281)
Q Consensus       139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~  216 (281)
                      +...++.++|++..++.++++++++.++++.|.+++++++||++ + |+++|+||.+|+++.+....    ..++.++| 
T Consensus        20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~----~~~v~~~m-   94 (148)
T 3lv9_A           20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN----KIELEEIL-   94 (148)
T ss_dssp             GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS----CCCGGGTC-
T ss_pred             cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC----CccHHHhc-
Confidence            45678999998545899999999999999999999999999999 5 89999999999985554432    45899999 


Q ss_pred             CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (281)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~  266 (281)
                      ++++++++++++.++++.|.+++.+.+||+|++|+++|+||..|++++..
T Consensus        95 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~  144 (148)
T 3lv9_A           95 RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIV  144 (148)
T ss_dssp             BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHH
T ss_pred             CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence            88999999999999999999999999999998899999999999998854

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.83  E-value=1.6e-20  Score=139.65  Aligned_cols=123  Identities=16%  Similarity=0.178  Sum_probs=107.0

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe--CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCe
Q 023512          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  220 (281)
Q Consensus       143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~  220 (281)
                      ++.++|++..++.++++++++.+|++.|.+++++++||++  +|+++|++|.+|+++ ...........++.++| ++++
T Consensus         3 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~-~~~~~~~~~~~~v~~~m-~~~~   80 (130)
T 3hf7_A            3 SVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYR-LMTEKKEFTKEIMLRAA-DEIY   80 (130)
T ss_dssp             BHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHH-HHTSSSCCCHHHHHHHS-BCCC
T ss_pred             CHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHH-HHhccCccchhhHHHhc-cCCe
Confidence            5678887556799999999999999999999999999996  489999999999974 44433333345788998 7789


Q ss_pred             eeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      ++++++++.++++.|.+++.+.+||+|++|+++|+||..|++++...
T Consensus        81 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A           81 FVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             EEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC
T ss_pred             EeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhC
Confidence            99999999999999999999999999989999999999999998654

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.83  E-value=1.3e-19  Score=137.79  Aligned_cols=137  Identities=18%  Similarity=0.336  Sum_probs=108.7

Q ss_pred             EEEehHHHHHHHHHhcCCCCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHH
Q 023512           20 GILTDKDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYD   95 (281)
Q Consensus        20 Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~   95 (281)
                      |.++..+  +.++.+...+.+.+++++|++  +++++++++++.+|++.|.+++++++||+++  ++++|+++..|++..
T Consensus         4 g~l~~~e--~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~   81 (148)
T 3lv9_A            4 GLIDESE--QRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQ   81 (148)
T ss_dssp             ----------------CGGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHH
T ss_pred             CccCHHH--HHHHHHHhccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHH
Confidence            5555444  345556667889999999998  9999999999999999999999999999986  799999999999765


Q ss_pred             HHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCc
Q 023512           96 AIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRL  175 (281)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~  175 (281)
                      ....                                        ...++.++|   .++.++++++++.++++.|.+++.
T Consensus        82 ~~~~----------------------------------------~~~~v~~~m---~~~~~v~~~~~l~~~~~~m~~~~~  118 (148)
T 3lv9_A           82 KINE----------------------------------------NKIELEEIL---RDIIYISENLTIDKALERIRKEKL  118 (148)
T ss_dssp             HHHH----------------------------------------SCCCGGGTC---BCCEEEETTSBHHHHHHHHHHHTC
T ss_pred             HhcC----------------------------------------CCccHHHhc---CCCeEECCCCCHHHHHHHHHhcCC
Confidence            3210                                        034578888   458899999999999999999999


Q ss_pred             cEEEEEe-CCeeeEeeeHHHHHHHHHh
Q 023512          176 SSAVVTV-ENKPRGILTSKDILMRVIS  201 (281)
Q Consensus       176 ~~~~V~~-~~~~~Givt~~di~~~~~~  201 (281)
                      +.+||+| +|+++|+||..|+++.+++
T Consensus       119 ~~l~Vvd~~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A          119 QLAIVVDEYGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             SEEEEECTTSSEEEEEEHHHHHHHHHH
T ss_pred             eEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            9999999 7999999999999976665

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.83  E-value=3.7e-20  Score=137.64  Aligned_cols=123  Identities=16%  Similarity=0.171  Sum_probs=106.3

Q ss_pred             cCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHHHHHHhcCCCCccccccccccC
Q 023512          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP  217 (281)
Q Consensus       140 ~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~  217 (281)
                      ...++.++|.+..++.++++++++.+|++.|.+++++++||++ + |+++|++|.+|+++......   ...++.++| +
T Consensus         4 ~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~---~~~~v~~~m-~   79 (130)
T 3i8n_A            4 QDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS---GQKQLGAVM-R   79 (130)
T ss_dssp             ---CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT---TTSBHHHHS-E
T ss_pred             CcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC---CcCCHHHHh-c
Confidence            3457899998656678999999999999999999999999999 5 89999999999985544332   245899999 4


Q ss_pred             CCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512          218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (281)
Q Consensus       218 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~  266 (281)
                      ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|++++..
T Consensus        80 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           80 PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHc
Confidence            6889999999999999999999999999998999999999999998753

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.82  E-value=1.7e-19  Score=134.43  Aligned_cols=124  Identities=28%  Similarity=0.413  Sum_probs=109.8

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCe
Q 023512          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  220 (281)
Q Consensus       141 ~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~  220 (281)
                      ..++.++|.  +++.++++++++.+|++.|.+++.+++||+++|+++|++|.+|++ +.+..... ...++.++|.+++.
T Consensus         3 ~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~-~~~~~~~~-~~~~v~~~~~~~~~   78 (133)
T 2ef7_A            3 EEIVKEYMK--TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIV-KAIGKGKS-LETKAEEFMTASLI   78 (133)
T ss_dssp             CCBGGGTSB--CSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-HHHHTTCC-TTCBGGGTSEECCC
T ss_pred             cccHHHhcc--CCCEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEcHHHHH-HHHhcCCC-cccCHHHHcCCCCE
Confidence            356888997  678999999999999999999999999999989999999999997 44443332 24589999999999


Q ss_pred             eeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      ++++++++.++++.|.+++.+++||+|++|+++|+||..|++++....
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~  126 (133)
T 2ef7_A           79 TIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM  126 (133)
T ss_dssp             CEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence            999999999999999999999999999889999999999999986654

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.82  E-value=9.2e-20  Score=142.19  Aligned_cols=124  Identities=15%  Similarity=0.162  Sum_probs=108.8

Q ss_pred             hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHHHHHHhcCCCCcccccccccc
Q 023512          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (281)
Q Consensus       139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~  216 (281)
                      +...++.++|.+..++.++++++++.+|++.|.+++++++||++ + |+++|+||.+|+++..... .   ..++.++| 
T Consensus        39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~-~---~~~v~~im-  113 (172)
T 3lhh_A           39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAG-E---RLELVDLV-  113 (172)
T ss_dssp             ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTT-C---CCCGGGGC-
T ss_pred             cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhc-C---cccHHHHh-
Confidence            44567999998766789999999999999999999999999999 5 8999999999998544432 2   45899999 


Q ss_pred             CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      ++++++++++++.++++.|.+++.+.+||+|++|+++|+||..|++++...
T Consensus       114 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          114 KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred             cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhC
Confidence            899999999999999999999999999999988999999999999998654

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.82  E-value=9.9e-20  Score=133.61  Aligned_cols=118  Identities=23%  Similarity=0.250  Sum_probs=105.5

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCee
Q 023512          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  221 (281)
Q Consensus       143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~  221 (281)
                      ++.++|.  +++.++++++++.++++.|.+++.+++||++ +|+++|++|.+|+++.+... .    .++.++|.+++.+
T Consensus         2 ~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~-~----~~v~~~~~~~~~~   74 (122)
T 3kpb_A            2 LVKDILS--KPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQN-K----KTIEEIMTRNVIT   74 (122)
T ss_dssp             BHHHHCC--SCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTT-C----CBGGGTSBSSCCC
T ss_pred             chHHhhC--CCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhc-c----cCHHHHhcCCCeE
Confidence            4667787  6789999999999999999999999999999 89999999999997444432 2    2799999999999


Q ss_pred             eeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       222 v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      +++++++.++++.|.+++.+++||+|++|+++|+||..|++++...
T Consensus        75 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           75 AHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             EETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred             ECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence            9999999999999999999999999988999999999999998654

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.82  E-value=7.7e-20  Score=135.50  Aligned_cols=123  Identities=13%  Similarity=0.082  Sum_probs=108.8

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCe
Q 023512          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  220 (281)
Q Consensus       141 ~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~  220 (281)
                      ..+++++|.  +++.++++++++.++++.|.+++.+++||+++|+++|++|.+|++ +...... ....++.++|.+++.
T Consensus         4 s~~v~~~m~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~-~~~~~~~-~~~~~v~~~m~~~~~   79 (128)
T 3gby_A            4 SVTFSYLAE--TDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLL-EGRKGWP-TVKEKLGEELLETVR   79 (128)
T ss_dssp             TCBGGGGCB--CCSCCEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-TTCSSSC-CTTCBCCGGGCBCCC
T ss_pred             ceEHHHhhc--CCcceECCCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHH-HHHhhCC-cccCcHHHHccCCCc
Confidence            356889998  779999999999999999999999999999999999999999997 3333222 122579999999999


Q ss_pred             eeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      ++.+++++.++++.|.+++.+++||+|++|+++|+||..|++++...
T Consensus        80 ~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           80 SYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             CBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred             EECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            99999999999999999999999999989999999999999998654

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.82  E-value=8.5e-20  Score=136.48  Aligned_cols=125  Identities=26%  Similarity=0.460  Sum_probs=108.7

Q ss_pred             CccccccCC-CceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCee
Q 023512          143 SLSTIIPEK-SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  221 (281)
Q Consensus       143 ~v~~~m~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~  221 (281)
                      ++.++|.+. +++.++++++++.++++.|.+++.+++||+++|+++|++|.+|+++.+..........++.++|.+++.+
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~   86 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAY   86 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCCC
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccCCCeE
Confidence            456677532 5688999999999999999999999999999999999999999975565544334466899999999999


Q ss_pred             eeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       222 v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      +++++++.++++.|.+++.+++||+| +|+++|+||..|++++....
T Consensus        87 v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~~  132 (135)
T 2rc3_A           87 VDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAISQ  132 (135)
T ss_dssp             BCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC-
T ss_pred             ECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHhc
Confidence            99999999999999999999999999 79999999999999986543

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.82  E-value=1.2e-19  Score=133.68  Aligned_cols=121  Identities=22%  Similarity=0.240  Sum_probs=106.6

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeee
Q 023512          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA  222 (281)
Q Consensus       143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v  222 (281)
                      ++.++|.  +++.++++++++.++++.|.+++.+++||+++|+++|++|.+|++ +.+.........++.++|.+++.++
T Consensus         2 ~v~~~m~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~G~it~~dl~-~~~~~~~~~~~~~v~~~m~~~~~~v   78 (125)
T 1pbj_A            2 RVEDVMV--TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVL-EAIAEGDDLAEVKVWEVMERDLVTI   78 (125)
T ss_dssp             CHHHHCB--CSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHH-HHHHHTCCTTTSBHHHHCBCGGGEE
T ss_pred             CHHHhcC--CCceEECCCCcHHHHHHHHHHcCCCEEEEEeCCeeEEEEeHHHHH-HHHhcCCcccccCHHHHcCCCCeEE
Confidence            3566776  679999999999999999999999999999999999999999997 4444433334568999999999999


Q ss_pred             eCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       223 ~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      ++++++.++++.|.+++.+++||+|+ |+++|+||..|++++...
T Consensus        79 ~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           79 SPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence            99999999999999999999999997 999999999999998654

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.82  E-value=4e-20  Score=138.57  Aligned_cols=124  Identities=20%  Similarity=0.216  Sum_probs=106.1

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHHHHHHhcCCCCccccccccccCCC
Q 023512          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (281)
Q Consensus       142 ~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~  219 (281)
                      .++.++|++..++.++++++++.+|++.|.+++++++||++ + |+++|+||.+|+++. +.... ....++.++|.+ +
T Consensus         3 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~-~~~~~-~~~~~v~~~m~~-~   79 (136)
T 3lfr_A            3 LQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPL-ILKAD-GDSDDVKKLLRP-A   79 (136)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGG-GGSSS-GGGCCGGGTCBC-C
T ss_pred             CChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHH-HHhcc-CCCcCHHHHcCC-C
Confidence            35778887656789999999999999999999999999999 5 799999999999743 33222 235589999966 8


Q ss_pred             eeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      +++++++++.++++.|.+++.+.+||+|++|+++|+||..|++++....
T Consensus        80 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~  128 (136)
T 3lfr_A           80 TFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGD  128 (136)
T ss_dssp             CEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC---
T ss_pred             eEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999986653

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.81  E-value=4.4e-20  Score=136.65  Aligned_cols=121  Identities=20%  Similarity=0.251  Sum_probs=104.2

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHHHHHHhcCCCCccccccccccCCC
Q 023512          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (281)
Q Consensus       142 ~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~  219 (281)
                      .++.++|.+..++.++++++++.++++.|.+++++++||++ + |+++|++|.+|+++.+....   ...+++++|.+ +
T Consensus         3 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~---~~~~v~~~m~~-~   78 (127)
T 3nqr_A            3 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA---EAFSMDKVLRT-A   78 (127)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTC---CCCCHHHHCBC-C
T ss_pred             cCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccC---CCCCHHHHcCC-C
Confidence            35778887544589999999999999999999999999999 5 89999999999974332221   24589999955 7


Q ss_pred             eeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (281)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~  266 (281)
                      .++++++++.++++.|.+++.+.+||+|++|+++|+||..|++++..
T Consensus        79 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~  125 (127)
T 3nqr_A           79 VVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIV  125 (127)
T ss_dssp             CEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC-
T ss_pred             eEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence            89999999999999999999999999999999999999999998753

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.81  E-value=2.8e-19  Score=134.13  Aligned_cols=125  Identities=25%  Similarity=0.459  Sum_probs=110.8

Q ss_pred             cCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCC
Q 023512          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  218 (281)
Q Consensus       140 ~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~  218 (281)
                      ...++.++|.  +++.++++++++.++++.|.+++++++||++ +|+++|+||.+|++++++.... ....++.++|.++
T Consensus         5 ~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-~~~~~v~~~m~~~   81 (138)
T 2yzi_A            5 MKAPIKVYMT--KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL-PYDIPVERIMTRN   81 (138)
T ss_dssp             TTSBGGGTCB--CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC-CTTSBGGGTCBCS
T ss_pred             hhhhHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCC-cccCCHHHHhhCC
Confidence            3457889997  7899999999999999999999999999999 8999999999999755554433 2356899999999


Q ss_pred             CeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      +.++++++++.++++.|.+++.+++ |+|++|+++|+||..|++++....
T Consensus        82 ~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~  130 (138)
T 2yzi_A           82 LITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRR  130 (138)
T ss_dssp             CCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCC
T ss_pred             CeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHH
Confidence            9999999999999999999999999 999889999999999999986543

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.81  E-value=3.6e-19  Score=134.08  Aligned_cols=126  Identities=21%  Similarity=0.311  Sum_probs=109.6

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CC--eeeEeeeHHHHHHHHHhcCCCCccccccccccCC
Q 023512          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN--KPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  218 (281)
Q Consensus       142 ~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~--~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~  218 (281)
                      .++.++|.  +++.++++++++.++++.|.+++++++||++ +|  +++|+||.+|+++ .+...... ..++.++|.++
T Consensus         5 ~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~-~~~~~~~~-~~~v~~~m~~~   80 (141)
T 2rih_A            5 IRTSELLK--RPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILR-AVAQRLDL-DGPAMPIANSP   80 (141)
T ss_dssp             CBGGGGCC--SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHH-HHHTTCCT-TSBSGGGCBCC
T ss_pred             eEHHHHhc--CCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHH-HHhcCCCC-CCCHHHHcCCC
Confidence            36888997  7899999999999999999999999999999 56  8999999999974 44333222 45899999999


Q ss_pred             CeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhchHHHH
Q 023512          219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATEILL  272 (281)
Q Consensus       219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~~~~~  272 (281)
                      +.+++++ ++.++++.|.+++.+++||+|++|+++|+||..||+++......+.
T Consensus        81 ~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~~l~  133 (141)
T 2rih_A           81 ITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAILLELA  133 (141)
T ss_dssp             CEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHHHHHHH
T ss_pred             CeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHHHHHHHh
Confidence            9999999 9999999999999999999998899999999999999876544433

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.81  E-value=4e-19  Score=136.71  Aligned_cols=130  Identities=21%  Similarity=0.237  Sum_probs=113.0

Q ss_pred             HHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcccccc
Q 023512          134 TLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVE  212 (281)
Q Consensus       134 ~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~  212 (281)
                      .+...+...++.++|.  + +.++++++++.+|++.|.+++++++||++ +|+++|+||.+|+++.++.. ......++.
T Consensus         9 ~l~~~l~~~~v~~im~--~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-~~~~~~~v~   84 (159)
T 3fv6_A            9 LLADKLKKLQVKDFQS--I-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQ-QELTSVPVH   84 (159)
T ss_dssp             HHHHHHTTCBGGGSCB--C-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSC-SCTTTCBGG
T ss_pred             HHHHHHhhCCHHHHcC--C-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhcc-CcccCcCHH
Confidence            3455667778999997  4 45999999999999999999999999999 89999999999998545433 333356899


Q ss_pred             ccccC--CCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCC---cEEEEEEhhhHHHhhhc
Q 023512          213 KVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDG---DVVDVVDVIHITHAAVA  267 (281)
Q Consensus       213 ~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~---~~~Gvis~~di~~~~~~  267 (281)
                      ++|.+  +++++.+++++.++++.|.+++++++||+|++|   +++|+||..||+++...
T Consensus        85 ~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           85 IIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             GTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHH
T ss_pred             HHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHH
Confidence            99997  899999999999999999999999999999888   99999999999998654

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.81  E-value=9.7e-20  Score=135.20  Aligned_cols=119  Identities=14%  Similarity=0.163  Sum_probs=104.0

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHHHHHHhcCCCCccccccccccCCC
Q 023512          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (281)
Q Consensus       142 ~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~  219 (281)
                      .++.++|++..++.++++++++.+|++.|.+++++++||++ + |+++|+||.+|+++ ....    ...++.++|. ++
T Consensus         5 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~-~~~~----~~~~v~~~m~-~~   78 (129)
T 3jtf_A            5 RTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLR-YMLE----PALDIRSLVR-PA   78 (129)
T ss_dssp             CBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGG-GGTC----TTSCGGGGCB-CC
T ss_pred             CCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHh-Hhcc----CCcCHHHHhC-CC
Confidence            46788998666789999999999999999999999999999 4 89999999999973 3322    2457899985 48


Q ss_pred             eeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (281)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~  266 (281)
                      +++.+++++.++++.|.+++.+.+||+|++|+++|+||..|++++..
T Consensus        79 ~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~  125 (129)
T 3jtf_A           79 VFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIV  125 (129)
T ss_dssp             CEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHH
T ss_pred             eEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence            89999999999999999999999999998899999999999998854

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.81  E-value=1.4e-19  Score=137.84  Aligned_cols=128  Identities=16%  Similarity=0.181  Sum_probs=109.7

Q ss_pred             hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCC----CCccccccc
Q 023512          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL----PADSTLVEK  213 (281)
Q Consensus       139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~----~~~~~~v~~  213 (281)
                      +...++.++|.+..++.++++++++.+|++.|.+++++++||+| +|+++|+||.+|+++.+.....    .....++.+
T Consensus        12 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~   91 (150)
T 3lqn_A           12 FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQ   91 (150)
T ss_dssp             HHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGG
T ss_pred             hhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHHH
Confidence            34457889998545699999999999999999999999999999 8999999999999744432111    123468999


Q ss_pred             cccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       214 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      +|.+++.++.+++++.++++.|.+++.  +||+|++|+++|+||..||+++....
T Consensus        92 ~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~  144 (150)
T 3lqn_A           92 VMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKK  144 (150)
T ss_dssp             TCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             HhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHH
Confidence            999999999999999999999999986  99999899999999999999987654

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.81  E-value=2e-19  Score=137.54  Aligned_cols=124  Identities=15%  Similarity=0.154  Sum_probs=109.5

Q ss_pred             cCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEE-e--CCeeeEeeeHHHHHHHHHhcCCCCcccccccccc
Q 023512          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVT-V--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (281)
Q Consensus       140 ~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~-~--~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~  216 (281)
                      ...++.++|.+..++.++++++++.+|++.|.+++++++||+ +  +|+++|+||.+|+++.+....    ..++.++| 
T Consensus        18 ~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~----~~~v~~~m-   92 (153)
T 3oco_A           18 NDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD----KAKISTIM-   92 (153)
T ss_dssp             HHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT----TSBGGGTC-
T ss_pred             CCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC----CCcHHHHh-
Confidence            345789999844489999999999999999999999999999 5  489999999999985554432    45899999 


Q ss_pred             CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      ++++++.+++++.++++.|.+++.+.+||+|++|+++|+||..|++++....
T Consensus        93 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~  144 (153)
T 3oco_A           93 RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGN  144 (153)
T ss_dssp             BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC-
T ss_pred             CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhcc
Confidence            8999999999999999999999999999999889999999999999997654

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.80  E-value=1.7e-19  Score=139.69  Aligned_cols=130  Identities=22%  Similarity=0.342  Sum_probs=113.9

Q ss_pred             hhcCCCccccccCC-CceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccc
Q 023512          138 RMFRPSLSTIIPEK-SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVM  215 (281)
Q Consensus       138 ~~~~~~v~~~m~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~  215 (281)
                      .+...++.++|.+. .++.++++++++.+|++.|.+++.+++||++ +|+++|+||.+|+++.+..........++.++|
T Consensus        20 ~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m   99 (165)
T 3fhm_A           20 QGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAM   99 (165)
T ss_dssp             SSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGGGTSBGGGTS
T ss_pred             hhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCccccCCHHHHh
Confidence            34566788999742 3699999999999999999999999999999 889999999999986665543233456899999


Q ss_pred             cCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       216 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      .++++++.+++++.++++.|.+++.+++||+|+ |+++|+||..||+++....
T Consensus       100 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~~  151 (165)
T 3fhm_A          100 TKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIGE  151 (165)
T ss_dssp             BSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTCC
T ss_pred             cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHH
Confidence            999999999999999999999999999999997 9999999999999997665

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.80  E-value=4.8e-19  Score=132.78  Aligned_cols=125  Identities=27%  Similarity=0.362  Sum_probs=109.1

Q ss_pred             hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHH-HHHHHhcCCCCcccccccccc
Q 023512          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI-LMRVISQNLPADSTLVEKVMT  216 (281)
Q Consensus       139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di-~~~~~~~~~~~~~~~v~~~~~  216 (281)
                      +...++.++|.  +++.++++++++.++++.|.+++.+++||++ +|+++|++|.+|+ + ..+.... ....++.++|.
T Consensus         5 l~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~-~~~~~~~-~~~~~v~~~m~   80 (138)
T 2p9m_A            5 LKNIKVKDVMT--KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGY-NLIRDKY-TLETTIGDVMT   80 (138)
T ss_dssp             CTTCBGGGTSB--CSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHH-HHTTTCC-CSSCBHHHHSC
T ss_pred             cccCCHHHhhc--CCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHH-HHHhhcc-cCCcCHHHHhC
Confidence            44567899997  6789999999999999999999999999999 8999999999999 7 4443322 22458999999


Q ss_pred             CCCeeeeCCCCHHHHHHHhHhCC-----CCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          217 PNPECATIDTPIVDALHIMHDGK-----FLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~-----~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      +++.++++++++.++++.|.+++     .+++||+|++|+++|+||..|++++...
T Consensus        81 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           81 KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            99999999999999999999999     9999999988999999999999987654

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.80  E-value=1.3e-19  Score=135.17  Aligned_cols=123  Identities=16%  Similarity=0.310  Sum_probs=108.5

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCe
Q 023512          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  220 (281)
Q Consensus       142 ~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~  220 (281)
                      .++.++|.  +++.++++++++.++++.|.+++.+++||+| +|+++|++|.+|++++.+.........++.++|.+++.
T Consensus         8 ~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~   85 (133)
T 1y5h_A            8 TTARDIMN--AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIY   85 (133)
T ss_dssp             CCHHHHSE--ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCC
T ss_pred             cCHHHHhc--CCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcCCCE
Confidence            46778887  6788999999999999999999999999997 89999999999997445554444445689999999999


Q ss_pred             eeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      ++++++++.++++.|.+++.+++||+|+ |+++|+||..||+++...
T Consensus        86 ~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A           86 YVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHLPE  131 (133)
T ss_dssp             CEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTCC-
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence            9999999999999999999999999997 999999999999988653

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.80  E-value=3.1e-19  Score=135.82  Aligned_cols=121  Identities=21%  Similarity=0.244  Sum_probs=107.6

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCe
Q 023512          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  220 (281)
Q Consensus       142 ~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~  220 (281)
                      .++.++|.+..++.++++++++.++++.|.+++++++||++ +|+++|+||..|++ +.+.........++.++|.+++.
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~v~~~m~~~~~  106 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLR-RVFDTGVDMRDASIADVMTRGGI  106 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHH-HHHCSSSCCTTCBHHHHSEESCC
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHH-HHHhcCCCcccCcHHHHcCCCCe
Confidence            57999998333899999999999999999999999999999 89999999999997 55554444346689999999999


Q ss_pred             eeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHh
Q 023512          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (281)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~  264 (281)
                      ++.+++++.++++.|.+++.+++||+|++ +++|+||..||+++
T Consensus       107 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~a  149 (149)
T 3k2v_A          107 RIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLRA  149 (149)
T ss_dssp             EECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTCC
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhcC
Confidence            99999999999999999999999999965 99999999999864

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.80  E-value=9e-19  Score=136.55  Aligned_cols=142  Identities=14%  Similarity=0.246  Sum_probs=104.0

Q ss_pred             CcEEEEEehHHHHHHHHHhcCCCCccccccccc--CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHH
Q 023512           16 ALLCGILTDKDIATRVIARELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAK   91 (281)
Q Consensus        16 ~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~d   91 (281)
                      +.-.|.++..+  +..+.+...+.+.+++++|+  ++++++++++++.+|++.|.+++++++||+++  ++++|+|+..|
T Consensus        19 ~~~~g~l~~~e--~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~d   96 (172)
T 3lhh_A           19 GSSAGVIEHNE--HAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQ   96 (172)
T ss_dssp             --------------------------CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHH
T ss_pred             HHHcCCCCHHH--HHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHH
Confidence            34456776554  24445556788899999999  78899999999999999999999999999985  89999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHH
Q 023512           92 CLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKML  171 (281)
Q Consensus        92 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~  171 (281)
                      ++.....                                        -...++.++|   +++.++++++++.++++.|.
T Consensus        97 l~~~~~~----------------------------------------~~~~~v~~im---~~~~~v~~~~~l~~a~~~m~  133 (172)
T 3lhh_A           97 LLSESIA----------------------------------------GERLELVDLV---KNCNFVPNSLSGMELLEHFR  133 (172)
T ss_dssp             HHHHHHT----------------------------------------TCCCCGGGGC---BCCEEEETTCCHHHHHHHHH
T ss_pred             HHHHHhh----------------------------------------cCcccHHHHh---cCCeEeCCCCCHHHHHHHHH
Confidence            9865211                                        0134588888   56889999999999999999


Q ss_pred             HcCccEEEEEe-CCeeeEeeeHHHHHHHHHhc
Q 023512          172 ELRLSSAVVTV-ENKPRGILTSKDILMRVISQ  202 (281)
Q Consensus       172 ~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~  202 (281)
                      +++.+.+||+| +|+++|+||..|+++.++..
T Consensus       134 ~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~  165 (172)
T 3lhh_A          134 TTGSQMVFVVDEYGDLKGLVTLQDMMDALTGE  165 (172)
T ss_dssp             HHTCSEEEEECTTSCEEEEEEHHHHHHHHHTT
T ss_pred             HcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCC
Confidence            99999999999 79999999999999776654

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.80  E-value=2.4e-19  Score=137.55  Aligned_cols=124  Identities=23%  Similarity=0.401  Sum_probs=108.8

Q ss_pred             CccccccCC----CceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCC
Q 023512          143 SLSTIIPEK----SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  218 (281)
Q Consensus       143 ~v~~~m~~~----~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~  218 (281)
                      ++.++|.+.    +++.++++++++.+|++.|.+++++++||.++|+++|++|.+|+++.+..........++.++|.++
T Consensus         8 ~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~   87 (157)
T 4fry_A            8 TVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQERSSKATRVEEIMTAK   87 (157)
T ss_dssp             BHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSBSS
T ss_pred             HHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHHhccCCccccCHHHHcCCC
Confidence            466777643    5579999999999999999999999999977999999999999986555544443466899999999


Q ss_pred             CeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      +.++.+++++.++++.|.+++.+++||+| +|+++|+||..||+++...
T Consensus        88 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~  135 (157)
T 4fry_A           88 VRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIA  135 (157)
T ss_dssp             CCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHT
T ss_pred             CcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            99999999999999999999999999999 7999999999999998654

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.79  E-value=3.5e-19  Score=135.60  Aligned_cols=127  Identities=27%  Similarity=0.376  Sum_probs=107.2

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhc------------CCCCcc
Q 023512          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ------------NLPADS  208 (281)
Q Consensus       142 ~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~------------~~~~~~  208 (281)
                      .++.++|.+..++.++++++++.++++.|.+++++++||++ +|+++|++|..|++..+...            ......
T Consensus         5 ~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~   84 (152)
T 4gqw_A            5 YTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTNG   84 (152)
T ss_dssp             SBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC-----C
T ss_pred             EEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhcc
Confidence            46889998544799999999999999999999999999999 78999999999996311100            011224


Q ss_pred             ccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       209 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      .++.++|.++++++++++++.++++.|.+++.+++||+|++|+++|+||.+||+++....
T Consensus        85 ~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~  144 (152)
T 4gqw_A           85 KLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQI  144 (152)
T ss_dssp             CBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC-
T ss_pred             ccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            589999999999999999999999999999999999999899999999999999987663

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.79  E-value=8e-19  Score=135.16  Aligned_cols=125  Identities=19%  Similarity=0.171  Sum_probs=108.5

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcC-------CCCccccccc
Q 023512          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-------LPADSTLVEK  213 (281)
Q Consensus       142 ~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~-------~~~~~~~v~~  213 (281)
                      .++.++|.  +++.++++++++.+|++.|.+++++++||+| +|+++|+||.+|+++.+....       ......++.+
T Consensus         5 ~~v~dim~--~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~   82 (160)
T 2o16_A            5 IKVEDMMT--RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE   82 (160)
T ss_dssp             CBGGGTSE--ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHH
T ss_pred             CcHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHHH
Confidence            46888997  6789999999999999999999999999999 899999999999985544311       1123558999


Q ss_pred             cccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhchH
Q 023512          214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATE  269 (281)
Q Consensus       214 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~~  269 (281)
                      +|.++++++++++++.++++.|.+++.+++||+|+ |+++|+||..||+++....+
T Consensus        83 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~~~  137 (160)
T 2o16_A           83 VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAINLL  137 (160)
T ss_dssp             HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHHHH
T ss_pred             HhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHh
Confidence            99999999999999999999999999999999997 99999999999999876543

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.79  E-value=7.3e-19  Score=137.13  Aligned_cols=123  Identities=15%  Similarity=0.178  Sum_probs=108.1

Q ss_pred             hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHHHHHHhcCCCCcccccccccc
Q 023512          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (281)
Q Consensus       139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~  216 (281)
                      +...++.++|++.+++.++++++++.++++.|.+++++++||++ + |+++|+||.+|++..+....    ..++.  |.
T Consensus        33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~----~~~v~--~~  106 (173)
T 3ocm_A           33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG----RVRRN--RL  106 (173)
T ss_dssp             HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS----SCCGG--GS
T ss_pred             cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC----cchhH--hc
Confidence            46678999998656799999999999999999999999999998 4 79999999999985554432    33677  45


Q ss_pred             CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      ++++++++++++.++++.|.+++.+.+||+|++|+++|+||..||+.+...
T Consensus       107 ~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          107 RDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             BCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHC
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhC
Confidence            788999999999999999999999999999989999999999999998654

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.79  E-value=1.3e-18  Score=133.56  Aligned_cols=122  Identities=21%  Similarity=0.310  Sum_probs=106.2

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCccE-EEEEeCCeeeEeeeHHHHHHHHHhc--------------CCCCc
Q 023512          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQ--------------NLPAD  207 (281)
Q Consensus       143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~-~~V~~~~~~~Givt~~di~~~~~~~--------------~~~~~  207 (281)
                      ++.++|.  +++.++++++++.+|++.|.+++.++ +||+++++++|+||..|+++.+...              .....
T Consensus        17 ~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (157)
T 1o50_A           17 DVCKLIS--LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLI   94 (157)
T ss_dssp             HHTTSSC--CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCS
T ss_pred             cHhhccc--CCCceECCCCCHHHHHHHHHhCCCCccEEEEECCEEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHHHHc
Confidence            4788887  78999999999999999999999999 9999944999999999998544311              01223


Q ss_pred             cccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       208 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      ..++.++|.+ ++++++++++.++++.|.+++.+++||+|++|+++|+||..||+++...
T Consensus        95 ~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A           95 AKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             SCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             CCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            5689999999 9999999999999999999999999999988999999999999988653

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.79  E-value=2.1e-18  Score=135.91  Aligned_cols=124  Identities=24%  Similarity=0.278  Sum_probs=110.6

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCe
Q 023512          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  220 (281)
Q Consensus       142 ~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~  220 (281)
                      .++.++|.  +++.++++++++.+|++.|.+++++++||++ +|+++|++|.+|++..+..........++.++|.+++.
T Consensus         9 ~~v~~im~--~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~~~   86 (184)
T 1pvm_A            9 MRVEKIMN--SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIP   86 (184)
T ss_dssp             CBGGGTSB--TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSCC
T ss_pred             cCHHHhcC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCCCc
Confidence            56889997  7899999999999999999999999999998 79999999999998544432223345689999999999


Q ss_pred             eeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      ++.+++++.++++.|.+++.+++||+|++|+++|+||..||+++...
T Consensus        87 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           87 KVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             EEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             EECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence            99999999999999999999999999988999999999999998766

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.79  E-value=7.2e-19  Score=130.62  Aligned_cols=123  Identities=19%  Similarity=0.203  Sum_probs=100.6

Q ss_pred             CCCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHH
Q 023512           37 NLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAA  112 (281)
Q Consensus        37 ~~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~  112 (281)
                      .+.+.+++++|++  +++++++++++.+|++.|.+++++++||+++  ++++|+++..|++.....              
T Consensus         2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~--------------   67 (130)
T 3i8n_A            2 NAQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQS--------------   67 (130)
T ss_dssp             -----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHT--------------
T ss_pred             CcCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhc--------------
Confidence            3567899999994  5678999999999999999999999999984  799999999999865211              


Q ss_pred             HHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeee
Q 023512          113 AVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILT  191 (281)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt  191 (281)
                                               .....++.++|.   ++.++++++++.++++.|.+++.+.+||+| +|+++|+||
T Consensus        68 -------------------------~~~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt  119 (130)
T 3i8n_A           68 -------------------------GSGQKQLGAVMR---PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVT  119 (130)
T ss_dssp             -------------------------TTTTSBHHHHSE---ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEE
T ss_pred             -------------------------CCCcCCHHHHhc---CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEE
Confidence                                     011234667773   478999999999999999999999999999 799999999


Q ss_pred             HHHHHHHHHh
Q 023512          192 SKDILMRVIS  201 (281)
Q Consensus       192 ~~di~~~~~~  201 (281)
                      ..|+++.+++
T Consensus       120 ~~dil~~l~g  129 (130)
T 3i8n_A          120 LEDIFEHLVG  129 (130)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcC
Confidence            9999966653

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.79  E-value=1e-18  Score=131.85  Aligned_cols=123  Identities=15%  Similarity=0.129  Sum_probs=103.3

Q ss_pred             CCccc---cccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccC
Q 023512          142 PSLST---IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP  217 (281)
Q Consensus       142 ~~v~~---~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~  217 (281)
                      .++.+   +|.  +++.++++++++.+|++.|.+++++++||++ +|+++|++|..|+++.+..........++.++|.+
T Consensus         8 ~~v~~~~~~~~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~   85 (144)
T 2nyc_A            8 IPIGDLNIITQ--DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR   85 (144)
T ss_dssp             SBGGGSSCCBC--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHH
T ss_pred             cchhhcCCCCC--CCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccccccCCccHHHHHhc
Confidence            34556   665  7799999999999999999999999999999 89999999999998544432222234588998875


Q ss_pred             ------CCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512          218 ------NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (281)
Q Consensus       218 ------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~  266 (281)
                            ++.++.+++++.++++.|.+++.+++||+|++|+++|+||..||+++..
T Consensus        86 ~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           86 RSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             CC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             CccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHH
Confidence                  6889999999999999999999999999998899999999999998864

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.79  E-value=2.1e-18  Score=126.93  Aligned_cols=121  Identities=19%  Similarity=0.240  Sum_probs=103.8

Q ss_pred             ccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhh
Q 023512           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH  120 (281)
Q Consensus        41 ~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (281)
                      ++++++|.+++.++++++++.+|++.|.+++++.+||+|+|+++|+++..|++......                     
T Consensus         1 m~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~G~it~~dl~~~~~~~---------------------   59 (125)
T 1pbj_A            1 MRVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEG---------------------   59 (125)
T ss_dssp             -CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHT---------------------
T ss_pred             CCHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEeCCeeEEEEeHHHHHHHHhcC---------------------
Confidence            37899999999999999999999999999999999999999999999999997542210                     


Q ss_pred             hCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHH
Q 023512          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVI  200 (281)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~  200 (281)
                                      ......++.++|.  +++.++++++++.++++.|.+++.+++||+++|+++|++|..|+++.+.
T Consensus        60 ----------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~Gvit~~dl~~~l~  121 (125)
T 1pbj_A           60 ----------------DDLAEVKVWEVME--RDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAKM  121 (125)
T ss_dssp             ----------------CCTTTSBHHHHCB--CGGGEECTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHC
T ss_pred             ----------------CcccccCHHHHcC--CCCeEECCCCCHHHHHHHHHhcCCcEEEEEECCEEEEEEEHHHHHHHHH
Confidence                            0112345777786  6799999999999999999999999999999999999999999985543

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.79  E-value=2.3e-18  Score=128.25  Aligned_cols=123  Identities=15%  Similarity=0.186  Sum_probs=106.6

Q ss_pred             CcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHh
Q 023512           39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (281)
Q Consensus        39 ~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (281)
                      .+.+++++|.+++.++++++++.+|++.|.+++++.+||+++++++|+++..|++......                   
T Consensus         2 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~-------------------   62 (133)
T 2ef7_A            2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKG-------------------   62 (133)
T ss_dssp             CCCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTT-------------------
T ss_pred             CcccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEcHHHHHHHHhcC-------------------
Confidence            4679999999999999999999999999999999999999999999999999997542110                   


Q ss_pred             hhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHH
Q 023512          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (281)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~  197 (281)
                                         .....++.++|.  +++.++++++++.++++.|.+++.+++||++ +|+++|+||..|+++
T Consensus        63 -------------------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~  121 (133)
T 2ef7_A           63 -------------------KSLETKAEEFMT--ASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITR  121 (133)
T ss_dssp             -------------------CCTTCBGGGTSE--ECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred             -------------------CCcccCHHHHcC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHH
Confidence                               012346888887  6789999999999999999999999999999 899999999999985


Q ss_pred             HHHh
Q 023512          198 RVIS  201 (281)
Q Consensus       198 ~~~~  201 (281)
                      .+..
T Consensus       122 ~~~~  125 (133)
T 2ef7_A          122 AIDD  125 (133)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.78  E-value=2.5e-19  Score=137.46  Aligned_cols=120  Identities=15%  Similarity=0.202  Sum_probs=105.5

Q ss_pred             hhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C-CeeeEeeeHHHHHHHHHhcCCCCccccccccc
Q 023512          138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVM  215 (281)
Q Consensus       138 ~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~  215 (281)
                      .+...++.++|++..++.++++++++.++++.|.+++++++||++ + ++++|+||.+|+++ .....   ...++.++|
T Consensus        34 ~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~-~~~~~---~~~~v~~im  109 (156)
T 3oi8_A           34 DFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLK-YMFNP---EQFHLKSIL  109 (156)
T ss_dssp             HHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGG-GSSCG---GGCCHHHHC
T ss_pred             ccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHH-HHHcC---CcccHHHHc
Confidence            356778999998545799999999999999999999999999999 5 59999999999973 33221   345899999


Q ss_pred             cCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHH
Q 023512          216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT  262 (281)
Q Consensus       216 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~  262 (281)
                      .+ ++++++++++.++++.|.+++.+.+||+|++|+++|+||..|++
T Consensus       110 ~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          110 RP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             BC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             CC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            65 89999999999999999999999999999999999999999986

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.78  E-value=1.1e-18  Score=140.68  Aligned_cols=161  Identities=15%  Similarity=0.085  Sum_probs=104.2

Q ss_pred             cccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHh
Q 023512           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (281)
Q Consensus        40 ~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d-~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (281)
                      ..+++++|.++++++++++++.+|+++|.+++++++||+| +++++|+++..|+...                       
T Consensus        12 ~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~-----------------------   68 (213)
T 1vr9_A           12 HMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL-----------------------   68 (213)
T ss_dssp             -CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTS-----------------------
T ss_pred             ccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhh-----------------------
Confidence            5689999999999999999999999999999999999998 5999999999998532                       


Q ss_pred             hhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHH
Q 023512          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (281)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~  197 (281)
                                          ....++.++|.  +++.++++++++.++++.|.+++++++||++ +|+++|+||.+|+++
T Consensus        69 --------------------~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~  126 (213)
T 1vr9_A           69 --------------------DLDSSVFNKVS--LPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLE  126 (213)
T ss_dssp             --------------------CTTSBSGGGCB--CTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHH
T ss_pred             --------------------cCCCcHHHHcc--CCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHH
Confidence                                11235889998  6789999999999999999999999999999 699999999999985


Q ss_pred             HHHhcCCCCccccccccccCC-CeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCc
Q 023512          198 RVISQNLPADSTLVEKVMTPN-PECATIDTPIVDALHIMHDGKFLHLPVVDRDGD  251 (281)
Q Consensus       198 ~~~~~~~~~~~~~v~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~  251 (281)
                      .+.....      ..+.+.+- +.+.....++.++.+.|.+++.+.++|++.+|.
T Consensus       127 ~~~~~~~------~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~~  175 (213)
T 1vr9_A          127 ALIEALA------MDVPGIRFSVLLEDKPGELRKVVDALALSNINILSVITTRSG  175 (213)
T ss_dssp             HHHHSCC------------------------------------------------
T ss_pred             HHHHHhc------CCCCcEEEEEEeCCCCccHHHHHHHHHHCCCcEEEEEEEecC
Confidence            5543221      12222211 111233445999999999999999999875543

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.78  E-value=1.7e-18  Score=128.18  Aligned_cols=121  Identities=11%  Similarity=0.159  Sum_probs=105.0

Q ss_pred             CcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHh
Q 023512           39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (281)
Q Consensus        39 ~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (281)
                      .+.+++++|.+++.++++++++.+|++.|.+++++.+||+++++++|+++..|+++....                    
T Consensus         3 ~s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~--------------------   62 (128)
T 3gby_A            3 ASVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLEGRKG--------------------   62 (128)
T ss_dssp             TTCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHTTCSS--------------------
T ss_pred             cceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHHHhh--------------------
Confidence            467999999999999999999999999999999999999999999999999999743100                    


Q ss_pred             hhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHH
Q 023512          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (281)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~  197 (281)
                         +               .....++.++|.  +++.++++++++.++++.|.+++.+++||+| +|+++|++|..|+++
T Consensus        63 ---~---------------~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~  122 (128)
T 3gby_A           63 ---W---------------PTVKEKLGEELL--ETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILG  122 (128)
T ss_dssp             ---S---------------CCTTCBCCGGGC--BCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHH
T ss_pred             ---C---------------CcccCcHHHHcc--CCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHH
Confidence               0               001245888887  7789999999999999999999999999998 899999999999984


Q ss_pred             HH
Q 023512          198 RV  199 (281)
Q Consensus       198 ~~  199 (281)
                      .+
T Consensus       123 ~l  124 (128)
T 3gby_A          123 FL  124 (128)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.78  E-value=2e-18  Score=126.61  Aligned_cols=116  Identities=22%  Similarity=0.325  Sum_probs=102.7

Q ss_pred             ccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhh
Q 023512           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (281)
Q Consensus        41 ~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d-~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (281)
                      ++++++|.+++.++++++++.+|++.|.+++++.+||++ +|+++|+++..|++.....                     
T Consensus         1 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~---------------------   59 (122)
T 3kpb_A            1 TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ---------------------   59 (122)
T ss_dssp             CBHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHT---------------------
T ss_pred             CchHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHh---------------------
Confidence            478999999999999999999999999999999999999 5999999999999765211                     


Q ss_pred             hhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHH
Q 023512          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  198 (281)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~  198 (281)
                                          ...++.++|.  +++.++++++++.++++.|.+++.+++||++ +|+++|++|..|+++.
T Consensus        60 --------------------~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~  117 (122)
T 3kpb_A           60 --------------------NKKTIEEIMT--RNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRL  117 (122)
T ss_dssp             --------------------TCCBGGGTSB--SSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             --------------------cccCHHHHhc--CCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHH
Confidence                                1225888887  6789999999999999999999999999999 6999999999999844


Q ss_pred             H
Q 023512          199 V  199 (281)
Q Consensus       199 ~  199 (281)
                      +
T Consensus       118 l  118 (122)
T 3kpb_A          118 F  118 (122)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.78  E-value=1.5e-18  Score=133.11  Aligned_cols=125  Identities=19%  Similarity=0.222  Sum_probs=104.2

Q ss_pred             cccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 023512           40 ETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (281)
Q Consensus        40 ~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (281)
                      ..+++++|.+  +++++++++|+.+|+++|.+++++++||+|+ ++++|+++..|++.+......               
T Consensus        14 ~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~---------------   78 (156)
T 3k6e_A           14 LGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDL---------------   78 (156)
T ss_dssp             HTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTC---------------
T ss_pred             hccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhccc---------------
Confidence            4578999985  7899999999999999999999999999986 999999999999876432100               


Q ss_pred             HhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHH
Q 023512          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (281)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di  195 (281)
                                        ........++.++|.  +++.++++++++.++++.|.++++  +||+| +|+++|+||.+|+
T Consensus        79 ------------------~~~~~~~~~v~~im~--~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~Di  136 (156)
T 3k6e_A           79 ------------------SQEIMADTDIVHMTK--TDVAVVSPDFTITEVLHKLVDESF--LPVVDAEGIFQGIITRKSI  136 (156)
T ss_dssp             ------------------CHHHHTTSBGGGTCB--CSCCCBCTTCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEHHHH
T ss_pred             ------------------ccccccccCHHHhhc--CCceecccccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEHHHH
Confidence                              011234557889998  889999999999999999987764  89998 8999999999999


Q ss_pred             HHHHHh
Q 023512          196 LMRVIS  201 (281)
Q Consensus       196 ~~~~~~  201 (281)
                      ++++..
T Consensus       137 l~~~~~  142 (156)
T 3k6e_A          137 LKAVNA  142 (156)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            966543

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.78  E-value=2e-18  Score=132.32  Aligned_cols=127  Identities=16%  Similarity=0.188  Sum_probs=107.8

Q ss_pred             hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcC-----CCCcccccc
Q 023512          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-----LPADSTLVE  212 (281)
Q Consensus       139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~-----~~~~~~~v~  212 (281)
                      +...++.++|.+..++.++++++++.+|++.|.+++++++||++ +|+++|+||..|+++ .....     ......++.
T Consensus         8 l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~-~~~~~~~~~~~~~~~~~v~   86 (157)
T 2emq_A            8 FMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMD-AILGLERIEFERLETMKVE   86 (157)
T ss_dssp             --CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHH-HSBCSSSBCGGGGGTCBGG
T ss_pred             HhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHH-HHhcccccchHHhcCCcHH
Confidence            45567899997333899999999999999999999999999999 899999999999974 43321     112345899


Q ss_pred             ccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       213 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      ++|.++++++++++++.++++.|.++++  +||+|++|+++|+||.+||+++....
T Consensus        87 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~  140 (157)
T 2emq_A           87 EVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQ  140 (157)
T ss_dssp             GTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHT
T ss_pred             HHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence            9999999999999999999999999987  99999889999999999999886543

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.78  E-value=3.2e-19  Score=139.83  Aligned_cols=126  Identities=21%  Similarity=0.339  Sum_probs=106.9

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcC------------------
Q 023512          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN------------------  203 (281)
Q Consensus       143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~------------------  203 (281)
                      ++.++|.+..++.++++++++.+|++.|.+++++++||++ +|+++|+||.+|+++......                  
T Consensus         5 ~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (180)
T 3sl7_A            5 TVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKT   84 (180)
T ss_dssp             BHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CCCS
T ss_pred             eHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchhhh
Confidence            5778887433799999999999999999999999999999 899999999999973211100                  


Q ss_pred             --------CCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          204 --------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       204 --------~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                              ......++.++|.++++++++++++.++++.|.+++.+++||+|++|+++|+||.+||+++....
T Consensus        85 ~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~  157 (180)
T 3sl7_A           85 FNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQI  157 (180)
T ss_dssp             HHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             hHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence                    01224579999999999999999999999999999999999999999999999999999986553

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.78  E-value=3.9e-18  Score=131.98  Aligned_cols=130  Identities=18%  Similarity=0.149  Sum_probs=110.7

Q ss_pred             hcCCCCcccccccccC---CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhh
Q 023512           34 RELNLEETPVSKVMTR---NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKA  109 (281)
Q Consensus        34 ~~~~~~~~~v~dim~~---~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~  109 (281)
                      ....+..++|+++|.+   +++++++++++.+|+++|.+++++.+||+|+ |+++|+|+..|+++......         
T Consensus        17 ~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~---------   87 (165)
T 3fhm_A           17 LYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQG---------   87 (165)
T ss_dssp             CCCSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHG---------
T ss_pred             hhHhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcC---------
Confidence            3446778899999996   6999999999999999999999999999995 89999999999987543210         


Q ss_pred             HHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEe
Q 023512          110 IAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGI  189 (281)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gi  189 (281)
                                                 ......++.++|.  +++.++++++++.++++.|.+++.+++||+++|+++|+
T Consensus        88 ---------------------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~~Gi  138 (165)
T 3fhm_A           88 ---------------------------AASLQQSVSVAMT--KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAGI  138 (165)
T ss_dssp             ---------------------------GGGGTSBGGGTSB--SSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEE
T ss_pred             ---------------------------CccccCCHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEE
Confidence                                       0123456888887  77899999999999999999999999999999999999


Q ss_pred             eeHHHHHHHHHh
Q 023512          190 LTSKDILMRVIS  201 (281)
Q Consensus       190 vt~~di~~~~~~  201 (281)
                      ||..|+++.+..
T Consensus       139 it~~dil~~~~~  150 (165)
T 3fhm_A          139 ISIGDVVKARIG  150 (165)
T ss_dssp             EEHHHHHHHTTC
T ss_pred             EEHHHHHHHHHH
Confidence            999999854443

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.78  E-value=1.1e-18  Score=129.43  Aligned_cols=119  Identities=16%  Similarity=0.236  Sum_probs=102.1

Q ss_pred             Cccccccccc--CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHH
Q 023512           39 EETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (281)
Q Consensus        39 ~~~~v~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~  114 (281)
                      .+.+++++|+  ++++++++++++.+|++.|.+++++++||+++  ++++|+++..|++....                 
T Consensus         3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~-----------------   65 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML-----------------   65 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT-----------------
T ss_pred             CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc-----------------
Confidence            4679999999  67899999999999999999999999999985  89999999999865310                 


Q ss_pred             hhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHH
Q 023512          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK  193 (281)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~  193 (281)
                                              ....++.++|.   ++.++++++++.++++.|.+++.+.+||+| +|+++|+||..
T Consensus        66 ------------------------~~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~  118 (129)
T 3jtf_A           66 ------------------------EPALDIRSLVR---PAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTME  118 (129)
T ss_dssp             ------------------------CTTSCGGGGCB---CCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHH
T ss_pred             ------------------------cCCcCHHHHhC---CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHH
Confidence                                    01235778884   378999999999999999999999999999 69999999999


Q ss_pred             HHHHHHHh
Q 023512          194 DILMRVIS  201 (281)
Q Consensus       194 di~~~~~~  201 (281)
                      |+++.++.
T Consensus       119 Dil~~l~g  126 (129)
T 3jtf_A          119 DVLEQIVG  126 (129)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhC
Confidence            99976665

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.77  E-value=4.4e-18  Score=131.00  Aligned_cols=130  Identities=20%  Similarity=0.309  Sum_probs=106.7

Q ss_pred             cccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHh
Q 023512           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (281)
Q Consensus        40 ~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (281)
                      ..+|+++|+++++++++++++.+|+++|.+++++.+||+|+ |+++|+|+..|++...........              
T Consensus         4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~--------------   69 (160)
T 2o16_A            4 MIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSA--------------   69 (160)
T ss_dssp             CCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC-----------------
T ss_pred             cCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccc--------------
Confidence            56899999999999999999999999999999999999985 999999999999876433210000              


Q ss_pred             hhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHH
Q 023512          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  198 (281)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~  198 (281)
                                     .........++.++|.  +++.++++++++.++++.|.+++.+++||+++|+++|+||..|+++.
T Consensus        70 ---------------~~~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGiit~~dil~~  132 (160)
T 2o16_A           70 ---------------QGDSLAFETPLFEVMH--TDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTI  132 (160)
T ss_dssp             ---------------------CCCBHHHHSC--SCEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHH
T ss_pred             ---------------cccchhcccCHHHHhc--CCCeEECCCCCHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHHH
Confidence                           0001123456788887  68999999999999999999999999999999999999999999854


Q ss_pred             HH
Q 023512          199 VI  200 (281)
Q Consensus       199 ~~  200 (281)
                      +.
T Consensus       133 ~~  134 (160)
T 2o16_A          133 AI  134 (160)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.77  E-value=5.8e-18  Score=132.01  Aligned_cols=142  Identities=15%  Similarity=0.178  Sum_probs=113.3

Q ss_pred             CcEEEEEehHHHHHHHHHhcCCCCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHH
Q 023512           16 ALLCGILTDKDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAK   91 (281)
Q Consensus        16 ~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~d   91 (281)
                      +.--|.++..+-  .++.+...+.+.+|+++|++  +++++++++++.+|++.|.+++++++||+++  ++++|+|+..|
T Consensus        13 ~~~~g~l~~~e~--~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~D   90 (173)
T 3ocm_A           13 MPAVPAFGVEER--NMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKD   90 (173)
T ss_dssp             -----CCCHHHH--HHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHH
T ss_pred             HHhcCCcCHHHH--HHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHH
Confidence            344588886663  44455557788899999974  6899999999999999999999999999974  79999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHH
Q 023512           92 CLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKML  171 (281)
Q Consensus        92 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~  171 (281)
                      ++......                                        ...++. ++   .++.++++++++.++++.|.
T Consensus        91 l~~~~~~~----------------------------------------~~~~v~-~~---~~~~~v~~~~~l~~al~~m~  126 (173)
T 3ocm_A           91 LVADLITE----------------------------------------GRVRRN-RL---RDPIIVHESIGILRLMDTLK  126 (173)
T ss_dssp             HHHHHHHH----------------------------------------SSCCGG-GS---BCCCEECGGGCHHHHHHHHH
T ss_pred             HHHHHhcC----------------------------------------CcchhH-hc---CCCeEECCCCcHHHHHHHHH
Confidence            98753210                                        112345 33   56889999999999999999


Q ss_pred             HcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcC
Q 023512          172 ELRLSSAVVTV-ENKPRGILTSKDILMRVISQN  203 (281)
Q Consensus       172 ~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~  203 (281)
                      +++.+.+||+| +|+++|+||..|++..++...
T Consensus       127 ~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i  159 (173)
T 3ocm_A          127 RSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEF  159 (173)
T ss_dssp             HSTTCCEEEECTTCCEEEEECHHHHHHHHHCCC
T ss_pred             HcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcC
Confidence            99999999998 899999999999997776543

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.77  E-value=7.8e-18  Score=134.83  Aligned_cols=120  Identities=16%  Similarity=0.235  Sum_probs=108.0

Q ss_pred             hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHc---CccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcccccccc
Q 023512          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL---RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKV  214 (281)
Q Consensus       139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~---~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~  214 (281)
                      +...++.++|+  +++.+++++.|+.++++.|.+.   +++.+||++ +|+++|+||.+|++.       .....+++++
T Consensus        51 ~~~~~v~~iM~--~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~-------~~~~~~v~~i  121 (205)
T 3kxr_A           51 YSENEIGRYTD--HQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFK-------HEPHEPLISL  121 (205)
T ss_dssp             SCTTCGGGGCB--CCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTT-------SCTTSBGGGG
T ss_pred             CCcchHHhhcc--CceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHh-------CCCcchHHHH
Confidence            35567999998  7899999999999999999986   789999999 899999999999962       1224589999


Q ss_pred             ccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       215 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      |+++++++++++++.++++.|.+++++.+||+|++|+++|+||..|++.....
T Consensus       122 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~  174 (205)
T 3kxr_A          122 LSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVRE  174 (205)
T ss_dssp             CCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             hcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988653

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.77  E-value=5.2e-19  Score=130.86  Aligned_cols=119  Identities=17%  Similarity=0.197  Sum_probs=100.2

Q ss_pred             cccccccccCC--CeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 023512           40 ETPVSKVMTRN--PTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (281)
Q Consensus        40 ~~~v~dim~~~--~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (281)
                      +.+++++|+++  ++++++++++.+|++.|.+++++++||+++  ++++|+++..|+++....                 
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~-----------------   64 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS-----------------   64 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST-----------------
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc-----------------
Confidence            56899999965  999999999999999999999999999985  799999999998653100                 


Q ss_pred             hHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHH
Q 023512          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  194 (281)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~d  194 (281)
                                            .....++.++|.   ++.++++++++.++++.|.+++.+.+||+| +|+++|+||..|
T Consensus        65 ----------------------~~~~~~v~~~m~---~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~d  119 (127)
T 3nqr_A           65 ----------------------DAEAFSMDKVLR---TAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIED  119 (127)
T ss_dssp             ----------------------TCCCCCHHHHCB---CCCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHH
T ss_pred             ----------------------cCCCCCHHHHcC---CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence                                  012345777774   367899999999999999999999999999 899999999999


Q ss_pred             HHHHHH
Q 023512          195 ILMRVI  200 (281)
Q Consensus       195 i~~~~~  200 (281)
                      +++.++
T Consensus       120 ll~~l~  125 (127)
T 3nqr_A          120 ILELIV  125 (127)
T ss_dssp             HHHHC-
T ss_pred             HHHHHh
Confidence            985543

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.77  E-value=9e-18  Score=125.39  Aligned_cols=121  Identities=17%  Similarity=0.217  Sum_probs=104.4

Q ss_pred             ccccccc---CCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHh
Q 023512           42 PVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (281)
Q Consensus        42 ~v~dim~---~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (281)
                      +++++|+   +++.++++++++.+|++.|.+++++.+||+|+++++|+++..|+++.....                   
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~-------------------   67 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLL-------------------   67 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGS-------------------
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHHHHHc-------------------
Confidence            8999999   899999999999999999999999999999999999999999997531110                   


Q ss_pred             hhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHH
Q 023512          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  198 (281)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~  198 (281)
                         +              ......++.++|.  +++.++++++++.++++.|.+++.+++||+++|+++|+||..|+++.
T Consensus        68 ---~--------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dll~~  128 (135)
T 2rc3_A           68 ---D--------------KPVKDTQVKEIMT--RQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKD  128 (135)
T ss_dssp             ---S--------------SCGGGSBGGGTSB--CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             ---C--------------CCcccCCHHHhcc--CCCeEECCCCcHHHHHHHHHHhCCCEEEEEeCCEEEEEEEHHHHHHH
Confidence               0              0112346888887  67899999999999999999999999999999999999999999855


Q ss_pred             HH
Q 023512          199 VI  200 (281)
Q Consensus       199 ~~  200 (281)
                      +.
T Consensus       129 ~~  130 (135)
T 2rc3_A          129 AI  130 (135)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.76  E-value=3e-18  Score=127.28  Aligned_cols=121  Identities=9%  Similarity=0.143  Sum_probs=99.6

Q ss_pred             ccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 023512           41 TPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (281)
Q Consensus        41 ~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (281)
                      .+++++|++  +++++++++++.+|++.|.+++++++||+++  ++++|+++..|+++.....                 
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~-----------------   64 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK-----------------   64 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSS-----------------
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhcc-----------------
Confidence            589999974  6899999999999999999999999999964  8999999999998652110                 


Q ss_pred             HhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHH
Q 023512          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (281)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di  195 (281)
                            ..              ....++.++|   .++.++++++++.++++.|.+++.+.+||+| +|+++|++|..|+
T Consensus        65 ------~~--------------~~~~~v~~~m---~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Di  121 (130)
T 3hf7_A           65 ------KE--------------FTKEIMLRAA---DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDI  121 (130)
T ss_dssp             ------SC--------------CCHHHHHHHS---BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHH
T ss_pred             ------Cc--------------cchhhHHHhc---cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHH
Confidence                  00              0001244455   4578899999999999999999999999998 8999999999999


Q ss_pred             HHHHHh
Q 023512          196 LMRVIS  201 (281)
Q Consensus       196 ~~~~~~  201 (281)
                      ++.+++
T Consensus       122 l~~l~g  127 (130)
T 3hf7_A          122 LEEIVG  127 (130)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            976654

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.76  E-value=2.3e-18  Score=132.40  Aligned_cols=129  Identities=13%  Similarity=0.179  Sum_probs=108.9

Q ss_pred             hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCC----CCccccccc
Q 023512          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL----PADSTLVEK  213 (281)
Q Consensus       139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~----~~~~~~v~~  213 (281)
                      +...++.++|.+.+++.++++++++.+|++.|.+++++++||++ +|+++|+||..|++..+.....    .....++.+
T Consensus        11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~   90 (159)
T 1yav_A           11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE   90 (159)
T ss_dssp             CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH
T ss_pred             HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHHH
Confidence            34567888997323799999999999999999999999999999 7899999999999744432111    023458999


Q ss_pred             cccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhchH
Q 023512          214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATE  269 (281)
Q Consensus       214 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~~  269 (281)
                      +|.+++.++.+++++.++++.|.++++  +||+|++|+++|+||.+||+++....+
T Consensus        91 ~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~  144 (159)
T 1yav_A           91 VMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHI  144 (159)
T ss_dssp             HSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC
T ss_pred             hcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHH
Confidence            999999999999999999999999986  999998899999999999999876543

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.76  E-value=9e-18  Score=128.79  Aligned_cols=143  Identities=16%  Similarity=0.199  Sum_probs=111.3

Q ss_pred             hcCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcE-eeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHH
Q 023512           34 RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRH-LPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAA  112 (281)
Q Consensus        34 ~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~-~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~  112 (281)
                      .+..+...+++++|+++++++++++++.+|++.|.+++++. +||+|+++++|+++..|++.......           +
T Consensus         9 ~~~~~~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~~~vGivt~~dl~~~~~~~~-----------~   77 (157)
T 1o50_A            9 HHHHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHF-----------F   77 (157)
T ss_dssp             -CTTCBHHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHH-----------H
T ss_pred             hhhhhccccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECCEEEEEEEHHHHHHHHhhhH-----------H
Confidence            45677889999999999999999999999999999999999 99999669999999999987543211           0


Q ss_pred             HHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeee
Q 023512          113 AVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILT  191 (281)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt  191 (281)
                      .      ...    ....+. .........++.++|.  + +.++++++++.++++.|.+++.+++||++ +|+++|+||
T Consensus        78 ~------~~~----~~~~~~-~~~~~~~~~~v~~im~--~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit  143 (157)
T 1o50_A           78 G------FIP----KEELIR-SSMKRLIAKNASEIML--D-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLN  143 (157)
T ss_dssp             C------CCC------------CCCCCSSCBHHHHCB--C-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEE
T ss_pred             h------hhc----cHHHHH-HHHHHHcCCcHHHHcC--C-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEE
Confidence            0      000    000000 0000123456788887  5 89999999999999999999999999999 899999999


Q ss_pred             HHHHHHHHHh
Q 023512          192 SKDILMRVIS  201 (281)
Q Consensus       192 ~~di~~~~~~  201 (281)
                      ..|+++.+..
T Consensus       144 ~~dll~~l~~  153 (157)
T 1o50_A          144 SLEILLALWK  153 (157)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999855543

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.76  E-value=1.2e-17  Score=125.60  Aligned_cols=117  Identities=15%  Similarity=0.210  Sum_probs=102.1

Q ss_pred             cccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-C--eEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 023512           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-G--EVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (281)
Q Consensus        40 ~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~--~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (281)
                      ..+++++|.+++.++++++++.+|++.|.+++++.+||+|+ +  +++|+++..|++......                 
T Consensus         4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~-----------------   66 (141)
T 2rih_A            4 AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR-----------------   66 (141)
T ss_dssp             -CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT-----------------
T ss_pred             ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcC-----------------
Confidence            46899999999999999999999999999999999999996 6  999999999997642110                 


Q ss_pred             HhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHH
Q 023512          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (281)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di  195 (281)
                                           .....++.++|.  +++.+++++ ++.++++.|.+++.+++||++ +|+++|+||..|+
T Consensus        67 ---------------------~~~~~~v~~~m~--~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dl  122 (141)
T 2rih_A           67 ---------------------LDLDGPAMPIAN--SPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDL  122 (141)
T ss_dssp             ---------------------CCTTSBSGGGCB--CCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred             ---------------------CCCCCCHHHHcC--CCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHH
Confidence                                 011346888887  689999999 999999999999999999999 8999999999999


Q ss_pred             HH
Q 023512          196 LM  197 (281)
Q Consensus       196 ~~  197 (281)
                      ++
T Consensus       123 l~  124 (141)
T 2rih_A          123 CF  124 (141)
T ss_dssp             HS
T ss_pred             HH
Confidence            74

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.76  E-value=1.1e-17  Score=128.32  Aligned_cols=137  Identities=17%  Similarity=0.234  Sum_probs=106.3

Q ss_pred             cccccccc------CCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHH
Q 023512           41 TPVSKVMT------RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (281)
Q Consensus        41 ~~v~dim~------~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~  114 (281)
                      .+|+|+|.      +++.++++++++.+|+++|.+++++.+||.++++++|+++..|+++.....               
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~---------------   71 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQ---------------   71 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSGGG---------------
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHHhc---------------
Confidence            47999998      456999999999999999999999999997779999999999997652110               


Q ss_pred             hhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHH
Q 023512          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKD  194 (281)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~d  194 (281)
                             +              ......++.++|.  +++.++++++++.++++.|.+++.+++||+++|+++|+||..|
T Consensus        72 -------~--------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~d  128 (157)
T 4fry_A           72 -------E--------------RSSKATRVEEIMT--AKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGD  128 (157)
T ss_dssp             -------T--------------CCSSSCBHHHHSB--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHH
T ss_pred             -------c--------------CCccccCHHHHcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHH
Confidence                   0              0012346778887  6789999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcccccccccc
Q 023512          195 ILMRVISQNLPADSTLVEKVMT  216 (281)
Q Consensus       195 i~~~~~~~~~~~~~~~v~~~~~  216 (281)
                      +++.+...... ....+++++.
T Consensus       129 il~~l~~~~~~-~~~~~~~~i~  149 (157)
T 4fry_A          129 LVKSVIADQQF-TISQLEHYIH  149 (157)
T ss_dssp             HHHHHHTTCCC-CCC-------
T ss_pred             HHHHHHHHHHh-hHHHHHhhcc
Confidence            99666554332 2224455544

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.75  E-value=3.3e-17  Score=122.70  Aligned_cols=125  Identities=22%  Similarity=0.252  Sum_probs=106.6

Q ss_pred             CCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 023512           37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (281)
Q Consensus        37 ~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d-~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (281)
                      .+...+++++|.++++++++++++.+|++.|.+++++.+||+| +|+++|+++..|+++.....                
T Consensus         3 ~l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~----------------   66 (138)
T 2yzi_A            3 MDMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVP----------------   66 (138)
T ss_dssp             CCTTSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT----------------
T ss_pred             chhhhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhc----------------
Confidence            4667899999999999999999999999999999999999999 59999999999997431100                


Q ss_pred             hHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHH
Q 023512          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  194 (281)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~d  194 (281)
                            +               .....++.++|.  +++.++++++++.++++.|.+++.+++ |++ +|+++|++|..|
T Consensus        67 ------~---------------~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~d  122 (138)
T 2yzi_A           67 ------G---------------LPYDIPVERIMT--RNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSD  122 (138)
T ss_dssp             ------C---------------CCTTSBGGGTCB--CSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHH
T ss_pred             ------C---------------CcccCCHHHHhh--CCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHH
Confidence                  0               012346888887  679999999999999999999999999 998 999999999999


Q ss_pred             HHHHHHh
Q 023512          195 ILMRVIS  201 (281)
Q Consensus       195 i~~~~~~  201 (281)
                      +++.+..
T Consensus       123 il~~~~~  129 (138)
T 2yzi_A          123 LLEASRR  129 (138)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            9855543

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.75  E-value=5.7e-18  Score=129.38  Aligned_cols=123  Identities=21%  Similarity=0.298  Sum_probs=106.1

Q ss_pred             CCCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEe-eC--CeEEEEEehHHHHHHHHHHHHHHHHhhhhHH
Q 023512           37 NLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVV-EN--GEVIALLDIAKCLYDAIARMERAAEKGKAIA  111 (281)
Q Consensus        37 ~~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~-d~--~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~  111 (281)
                      .+.+.+++++|++  +++++++++++.+|++.|.+++++++||+ ++  ++++|+|+..|++......            
T Consensus        16 ~l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~------------   83 (153)
T 3oco_A           16 EMNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID------------   83 (153)
T ss_dssp             HHHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH------------
T ss_pred             ccCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC------------
Confidence            4567899999996  89999999999999999999999999999 53  8999999999998653211            


Q ss_pred             HHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEee
Q 023512          112 AAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGIL  190 (281)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Giv  190 (281)
                                                  ...++.++|   +++.++++++++.++++.|.+++.+.+||++ +|+++|+|
T Consensus        84 ----------------------------~~~~v~~~m---~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGiv  132 (153)
T 3oco_A           84 ----------------------------DKAKISTIM---RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGII  132 (153)
T ss_dssp             ----------------------------TTSBGGGTC---BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEE
T ss_pred             ----------------------------CCCcHHHHh---CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEe
Confidence                                        123577888   4688999999999999999999999999999 79999999


Q ss_pred             eHHHHHHHHHhc
Q 023512          191 TSKDILMRVISQ  202 (281)
Q Consensus       191 t~~di~~~~~~~  202 (281)
                      |..|+++.++..
T Consensus       133 t~~dil~~l~~~  144 (153)
T 3oco_A          133 TDKDVYEELFGN  144 (153)
T ss_dssp             CHHHHHHHHHC-
T ss_pred             eHHHHHHHHhcc
Confidence            999999766653

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.75  E-value=7.4e-18  Score=132.66  Aligned_cols=129  Identities=12%  Similarity=0.167  Sum_probs=109.0

Q ss_pred             hhcCCCccccccCCCc--eeEe--CCCCcHHHHHHHHHHcCccEEEEE--e-CCeeeEeeeHHHHHHHHHhcC-------
Q 023512          138 RMFRPSLSTIIPEKSK--VVTI--SPTDTVLMATKKMLELRLSSAVVT--V-ENKPRGILTSKDILMRVISQN-------  203 (281)
Q Consensus       138 ~~~~~~v~~~m~~~~~--~~~v--~~~~~l~~~~~~~~~~~~~~~~V~--~-~~~~~Givt~~di~~~~~~~~-------  203 (281)
                      .....++.++|.+..+  +.++  ++++++.+|++.|.+++++++||+  + +|+++|+||..|+++.+....       
T Consensus         7 ~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~   86 (185)
T 2j9l_A            7 FAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVV   86 (185)
T ss_dssp             --CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred             hhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCcc
Confidence            3456678999984322  7788  999999999999999999999999  6 899999999999986554321       


Q ss_pred             ----------------CCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          204 ----------------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       204 ----------------~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                                      ......++.++|.++++++.+++++.++++.|.+++.+++||+| +|+++|+||..||+++...
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~  165 (185)
T 2j9l_A           87 STSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  165 (185)
T ss_dssp             TTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             ccceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                            11235689999999999999999999999999999999999999 8999999999999998654

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.75  E-value=2.2e-18  Score=129.08  Aligned_cols=121  Identities=12%  Similarity=0.180  Sum_probs=101.2

Q ss_pred             ccccccccc--CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 023512           40 ETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (281)
Q Consensus        40 ~~~v~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (281)
                      +.+++++|+  ++++++++++++.+|+++|.+++++++||+++  ++++|+|+..|++.+...                 
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~-----------------   64 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILK-----------------   64 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGS-----------------
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHh-----------------
Confidence            568999999  57899999999999999999999999999985  799999999998753110                 


Q ss_pred             hHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHH
Q 023512          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  194 (281)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~d  194 (281)
                                           ......++.++|.  + +.++++++++.++++.|.+++.+.+||+| +|+++|+||..|
T Consensus        65 ---------------------~~~~~~~v~~~m~--~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~D  120 (136)
T 3lfr_A           65 ---------------------ADGDSDDVKKLLR--P-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIED  120 (136)
T ss_dssp             ---------------------SSGGGCCGGGTCB--C-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHH
T ss_pred             ---------------------ccCCCcCHHHHcC--C-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence                                 0112345788885  3 88999999999999999999999999998 899999999999


Q ss_pred             HHHHHHh
Q 023512          195 ILMRVIS  201 (281)
Q Consensus       195 i~~~~~~  201 (281)
                      +++.++.
T Consensus       121 il~~l~~  127 (136)
T 3lfr_A          121 VLEQIVG  127 (136)
T ss_dssp             HHTTC--
T ss_pred             HHHHHhC
Confidence            9854443

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.74  E-value=8.3e-18  Score=125.97  Aligned_cols=123  Identities=26%  Similarity=0.353  Sum_probs=104.3

Q ss_pred             CCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHH-HHHHHHHHHHHHHhhhhHHHHHh
Q 023512           38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKC-LYDAIARMERAAEKGKAIAAAVE  115 (281)
Q Consensus        38 ~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dl-l~~~~~~~~~~~~~~~~~~~~~~  115 (281)
                      +.+.+++++|++++.++++++++.+|++.|.+++++++||+|+ ++++|+++..|+ +.....                 
T Consensus         5 l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-----------------   67 (138)
T 2p9m_A            5 LKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRD-----------------   67 (138)
T ss_dssp             CTTCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTT-----------------
T ss_pred             cccCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhh-----------------
Confidence            4578999999999999999999999999999999999999984 999999999998 654210                 


Q ss_pred             hHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcC-----ccEEEEEe-CCeeeEe
Q 023512          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGI  189 (281)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~-----~~~~~V~~-~~~~~Gi  189 (281)
                                           ......++.++|.  +++.++++++++.++++.|.+++     .+++||++ +|+++|+
T Consensus        68 ---------------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Gi  124 (138)
T 2p9m_A           68 ---------------------KYTLETTIGDVMT--KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGI  124 (138)
T ss_dssp             ---------------------CCCSSCBHHHHSC--SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEE
T ss_pred             ---------------------cccCCcCHHHHhC--CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEE
Confidence                                 0112345777786  67899999999999999999999     99999999 9999999


Q ss_pred             eeHHHHHHHHH
Q 023512          190 LTSKDILMRVI  200 (281)
Q Consensus       190 vt~~di~~~~~  200 (281)
                      +|..|+++.+.
T Consensus       125 it~~dll~~~~  135 (138)
T 2p9m_A          125 ISDGDIIRTIS  135 (138)
T ss_dssp             EEHHHHHHHHH
T ss_pred             EEHHHHHHHHH
Confidence            99999985443

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.74  E-value=3.1e-17  Score=126.04  Aligned_cols=126  Identities=16%  Similarity=0.252  Sum_probs=106.1

Q ss_pred             CCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 023512           38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (281)
Q Consensus        38 ~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d-~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (281)
                      +...+++++|++ ++++++++++.+|++.|.+++++.+||+| +++++|+|+..|++......                 
T Consensus        14 l~~~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-----------------   75 (159)
T 3fv6_A           14 LKKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQ-----------------   75 (159)
T ss_dssp             HTTCBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSC-----------------
T ss_pred             HhhCCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhcc-----------------
Confidence            456799999997 55999999999999999999999999999 59999999999997652110                 


Q ss_pred             HhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CC---eeeEeeeH
Q 023512          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN---KPRGILTS  192 (281)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~---~~~Givt~  192 (281)
                                          ......++.++|.+.+++.++++++++.++++.|.+++.+++||++ +|   +++|+||.
T Consensus        76 --------------------~~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~  135 (159)
T 3fv6_A           76 --------------------QELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTK  135 (159)
T ss_dssp             --------------------SCTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEH
T ss_pred             --------------------CcccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEH
Confidence                                0123456888997333789999999999999999999999999999 66   99999999


Q ss_pred             HHHHHHHHh
Q 023512          193 KDILMRVIS  201 (281)
Q Consensus       193 ~di~~~~~~  201 (281)
                      .|+++.+..
T Consensus       136 ~dil~~l~~  144 (159)
T 3fv6_A          136 TNMTKILVS  144 (159)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999865543

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.74  E-value=2.5e-17  Score=131.82  Aligned_cols=124  Identities=10%  Similarity=0.038  Sum_probs=108.3

Q ss_pred             HhcCCCCcccccccccCCCeEecCCchHHHHHHHhHhC---CCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhh
Q 023512           33 ARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG---KFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGK  108 (281)
Q Consensus        33 ~~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~---~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~  108 (281)
                      .+...+.+.+++++|+++++++++++|+.+|++.|.++   +++.+||+++ ++++|+|+..|++..             
T Consensus        46 ~~~l~~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~-------------  112 (205)
T 3kxr_A           46 ELYDQYSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH-------------  112 (205)
T ss_dssp             HHHHHSCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTS-------------
T ss_pred             HHHhCCCcchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhC-------------
Confidence            34446778899999999999999999999999999987   8899999995 999999999998631             


Q ss_pred             hHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeee
Q 023512          109 AIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPR  187 (281)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~  187 (281)
                                                    ....++.++|.  +++.++++++++.++++.|.+++.+.+||+| +|+++
T Consensus       113 ------------------------------~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lv  160 (205)
T 3kxr_A          113 ------------------------------EPHEPLISLLS--EDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELI  160 (205)
T ss_dssp             ------------------------------CTTSBGGGGCC--SSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEE
T ss_pred             ------------------------------CCcchHHHHhc--CCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEE
Confidence                                          11245888997  7789999999999999999999999999999 89999


Q ss_pred             EeeeHHHHHHHHHh
Q 023512          188 GILTSKDILMRVIS  201 (281)
Q Consensus       188 Givt~~di~~~~~~  201 (281)
                      |+||..|++..+..
T Consensus       161 GiIT~~Dil~~i~~  174 (205)
T 3kxr_A          161 GRVTLRAATALVRE  174 (205)
T ss_dssp             EEEEHHHHHHHHHH
T ss_pred             EEEEHHHHHHHHHH
Confidence            99999999855543

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.74  E-value=8.2e-18  Score=127.96  Aligned_cols=133  Identities=17%  Similarity=0.210  Sum_probs=105.2

Q ss_pred             cccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 023512           40 ETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (281)
Q Consensus        40 ~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (281)
                      ..+++++|.+  +++++++++++.+|++.|.+++++.+||+|+ ++++|+|+..|++........               
T Consensus         4 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~---------------   68 (152)
T 4gqw_A            4 VYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDST---------------   68 (152)
T ss_dssp             CSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----C---------------
T ss_pred             eEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCc---------------
Confidence            5689999998  8999999999999999999999999999996 899999999999753211000               


Q ss_pred             HhhhhCCCCCChhhHHHHH---HHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeH
Q 023512          117 VEKHWGTSISGPNTFIETL---RERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS  192 (281)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~  192 (281)
                                  .......   .......++.++|.  +++.++++++++.++++.|.+++.+++||++ +|+++|+||.
T Consensus        69 ------------~~~~~~~~~~~~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~  134 (152)
T 4gqw_A           69 ------------WKTFNAVQKLLSKTNGKLVGDLMT--PAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITR  134 (152)
T ss_dssp             ------------CHHHHHHHTC-----CCBHHHHSE--ESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEH
T ss_pred             ------------ccchHHHHHHHHHhccccHHHhcC--CCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEH
Confidence                        0000000   01123456888887  6788999999999999999999999999999 8999999999


Q ss_pred             HHHHHHHHh
Q 023512          193 KDILMRVIS  201 (281)
Q Consensus       193 ~di~~~~~~  201 (281)
                      +|+++.+..
T Consensus       135 ~dil~~~~~  143 (152)
T 4gqw_A          135 GNVVRAALQ  143 (152)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            999965554

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.74  E-value=2.4e-17  Score=127.11  Aligned_cols=132  Identities=17%  Similarity=0.168  Sum_probs=103.3

Q ss_pred             CCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEee---CCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHH
Q 023512           37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA  113 (281)
Q Consensus        37 ~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d---~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~  113 (281)
                      ...+.+++++|+++++++++++++.+|+++|.+++++++||+|   +++++|+++..|++..........          
T Consensus         9 ~~~~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~----------   78 (164)
T 2pfi_A            9 GSHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSR----------   78 (164)
T ss_dssp             -CCSCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC---------------
T ss_pred             cccCCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhcccc----------
Confidence            4567899999999999999999999999999999999999998   389999999999976532110000          


Q ss_pred             HhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCC----CceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEe
Q 023512          114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEK----SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGI  189 (281)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~----~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gi  189 (281)
                             .                .....++.++|...    ..+.++++++++.++++.|.+++.+++||+++|+++|+
T Consensus        79 -------~----------------~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~l~Gi  135 (164)
T 2pfi_A           79 -------A----------------PGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGC  135 (164)
T ss_dssp             -------------------------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEETTEEEEE
T ss_pred             -------C----------------CcccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEECCEEEEE
Confidence                   0                00112344444311    11788999999999999999999999999999999999


Q ss_pred             eeHHHHHHHHHh
Q 023512          190 LTSKDILMRVIS  201 (281)
Q Consensus       190 vt~~di~~~~~~  201 (281)
                      ||..|+++.+..
T Consensus       136 it~~dil~~~~~  147 (164)
T 2pfi_A          136 VSWVEMKKAISN  147 (164)
T ss_dssp             EEHHHHHHHHHH
T ss_pred             EEHHHHHHHHHh
Confidence            999999865554

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.74  E-value=1.6e-17  Score=126.26  Aligned_cols=128  Identities=16%  Similarity=0.190  Sum_probs=105.0

Q ss_pred             CCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHH
Q 023512           38 LEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (281)
Q Consensus        38 ~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d-~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~  114 (281)
                      +.+.+++++|++  +++++++++++.+|++.|.+++++++||+| +|+++|+|+..|++......               
T Consensus        12 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~---------------   76 (150)
T 3lqn_A           12 FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGL---------------   76 (150)
T ss_dssp             HHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCS---------------
T ss_pred             hhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhh---------------
Confidence            457899999994  599999999999999999999999999998 59999999999998652100               


Q ss_pred             hhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHH
Q 023512          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK  193 (281)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~  193 (281)
                               ....        .......++.++|.  +++.++++++++.++++.|.++++  +||++ +|+++|+||..
T Consensus        77 ---------~~~~--------~~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~  135 (150)
T 3lqn_A           77 ---------ERIE--------FERLEEMKVEQVMK--QDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRR  135 (150)
T ss_dssp             ---------SSBC--------GGGGGGCBGGGTCB--SSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHH
T ss_pred             ---------cccc--------hhHHhcCCHHHHhc--CCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHH
Confidence                     0000        00123456888997  778999999999999999999886  99999 89999999999


Q ss_pred             HHHHHHHh
Q 023512          194 DILMRVIS  201 (281)
Q Consensus       194 di~~~~~~  201 (281)
                      |+++.+..
T Consensus       136 dil~~l~~  143 (150)
T 3lqn_A          136 AILKLLNK  143 (150)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99865544

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.73  E-value=2e-17  Score=125.73  Aligned_cols=118  Identities=14%  Similarity=0.162  Sum_probs=102.0

Q ss_pred             cccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 023512           40 ETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (281)
Q Consensus        40 ~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (281)
                      .++++++|.+  +++++++++++.+|++.|.+++++.+||+|+ |+++|+|+..|++......                 
T Consensus        27 ~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-----------------   89 (149)
T 3k2v_A           27 LLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTG-----------------   89 (149)
T ss_dssp             TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSS-----------------
T ss_pred             ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcC-----------------
Confidence            4699999999  9999999999999999999999999999995 8999999999997642100                 


Q ss_pred             HhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHH
Q 023512          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (281)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~  196 (281)
                            .              .....++.++|.  +++.++++++++.++++.|.+++.+++||+++++++|+||..|++
T Consensus        90 ------~--------------~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~Giit~~dil  147 (149)
T 3k2v_A           90 ------V--------------DMRDASIADVMT--RGGIRIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVVHMHDLL  147 (149)
T ss_dssp             ------S--------------CCTTCBHHHHSE--ESCCEECTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHT
T ss_pred             ------C--------------CcccCcHHHHcC--CCCeEECCCCCHHHHHHHHHHcCCCEEEEecCCEEEEEEEHHHhh
Confidence                  0              012345777886  678999999999999999999999999999977999999999996

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.73  E-value=1.5e-18  Score=133.03  Aligned_cols=121  Identities=17%  Similarity=0.227  Sum_probs=102.9

Q ss_pred             HhcCCCCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhhh
Q 023512           33 ARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGK  108 (281)
Q Consensus        33 ~~~~~~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~~~~  108 (281)
                      .+...+.+.+++++|++  +++++++++++.+|++.|.+++++++||+++  ++++|+++..|++.....          
T Consensus        30 ~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~----------   99 (156)
T 3oi8_A           30 EKVLDFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFN----------   99 (156)
T ss_dssp             HHHHHHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSC----------
T ss_pred             HHHhccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHc----------
Confidence            33446778899999997  7899999999999999999999999999985  499999999998653100          


Q ss_pred             hHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeee
Q 023512          109 AIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPR  187 (281)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~  187 (281)
                                                   . ...++.++|.   ++.++++++++.++++.|.+++.+.+||+| +|+++
T Consensus       100 -----------------------------~-~~~~v~~im~---~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~  146 (156)
T 3oi8_A          100 -----------------------------P-EQFHLKSILR---PAVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTS  146 (156)
T ss_dssp             -----------------------------G-GGCCHHHHCB---CCCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEE
T ss_pred             -----------------------------C-CcccHHHHcC---CCEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEE
Confidence                                         0 1235677774   388999999999999999999999999999 89999


Q ss_pred             EeeeHHHHH
Q 023512          188 GILTSKDIL  196 (281)
Q Consensus       188 Givt~~di~  196 (281)
                      |+||..|++
T Consensus       147 Givt~~Dil  155 (156)
T 3oi8_A          147 GLVTFEDII  155 (156)
T ss_dssp             EEEEHHHHC
T ss_pred             EEEEHHHhc
Confidence            999999985

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.73  E-value=2.4e-17  Score=127.07  Aligned_cols=125  Identities=10%  Similarity=0.131  Sum_probs=105.4

Q ss_pred             cCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe---CCeeeEeeeHHHHHHHHHhcCCC---Cccccccc
Q 023512          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLP---ADSTLVEK  213 (281)
Q Consensus       140 ~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~di~~~~~~~~~~---~~~~~v~~  213 (281)
                      ...++.++|.  +++.++++++++.+|++.|.+++++++||++   +|+++|+||..|+++.+......   ....++.+
T Consensus        11 ~~~~v~dim~--~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~~   88 (164)
T 2pfi_A           11 HHVRVEHFMN--HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQD   88 (164)
T ss_dssp             CSCBHHHHCB--CCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHHH
T ss_pred             cCCCHHHHcC--CCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhhh
Confidence            3456888997  6799999999999999999999999999998   48999999999997444322111   12346888


Q ss_pred             cccCC------CeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          214 VMTPN------PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       214 ~~~~~------~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      +|.+.      +.++.+++++.++++.|.+++.+++||+| +|+++|+||..||+++...
T Consensus        89 ~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A           89 ILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             HHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             hhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence            88766      78999999999999999999999999999 7999999999999988654

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.72  E-value=5.2e-17  Score=130.90  Aligned_cols=118  Identities=17%  Similarity=0.198  Sum_probs=105.2

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCC
Q 023512          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (281)
Q Consensus       141 ~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~  219 (281)
                      ..++.++|.  +++.++.+++|+.+|++.|.+++++++||++ +|+++|++|.+|+++ ...      ..++.++|.+++
T Consensus        12 ~~~~~~~~~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~-~~~------~~~v~~im~~~~   82 (213)
T 1vr9_A           12 HMKVKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLD-LDL------DSSVFNKVSLPD   82 (213)
T ss_dssp             -CBGGGGCB--SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTT-SCT------TSBSGGGCBCTT
T ss_pred             ccCHHHhhc--CCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHh-hcC------CCcHHHHccCCC
Confidence            345777887  7899999999999999999999999999999 899999999999962 221      347999999999


Q ss_pred             eeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      +++.+++++.++++.|.+++++++||+|++|+++|+||.+|++++...
T Consensus        83 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~  130 (213)
T 1vr9_A           83 FFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE  130 (213)
T ss_dssp             CCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             EEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            999999999999999999999999999988999999999999987543

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.72  E-value=8.9e-17  Score=123.06  Aligned_cols=130  Identities=13%  Similarity=0.221  Sum_probs=104.8

Q ss_pred             CCCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHH
Q 023512           37 NLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAA  113 (281)
Q Consensus        37 ~~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~  113 (281)
                      .+...+++++|.+  +++++++++++.+|++.|.+++++++||+|+ |+++|+++..|++......              
T Consensus         7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~--------------   72 (157)
T 2emq_A            7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGL--------------   72 (157)
T ss_dssp             ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCS--------------
T ss_pred             hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcc--------------
Confidence            4567899999997  8999999999999999999999999999995 9999999999997642100              


Q ss_pred             HhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeH
Q 023512          114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS  192 (281)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~  192 (281)
                               ..    ..     .......++.++|.  +++.++++++++.++++.|.++++  +||++ +|+++|+||.
T Consensus        73 ---------~~----~~-----~~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~  130 (157)
T 2emq_A           73 ---------ER----IE-----FERLETMKVEEVMN--RNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTR  130 (157)
T ss_dssp             ---------SS----BC-----GGGGGTCBGGGTCB--CCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEH
T ss_pred             ---------cc----cc-----hHHhcCCcHHHHhC--CCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEH
Confidence                     00    00     01223456888997  679999999999999999999887  99999 7999999999


Q ss_pred             HHHHHHHHhc
Q 023512          193 KDILMRVISQ  202 (281)
Q Consensus       193 ~di~~~~~~~  202 (281)
                      .|+++.+...
T Consensus       131 ~dil~~~~~~  140 (157)
T 2emq_A          131 REVLKQLNKQ  140 (157)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9998655543

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.72  E-value=1.3e-16  Score=130.95  Aligned_cols=160  Identities=15%  Similarity=0.141  Sum_probs=108.8

Q ss_pred             CCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC---CeEEEEEehHHHHHHHHHHHHHHHHh-------
Q 023512           37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN---GEVIALLDIAKCLYDAIARMERAAEK-------  106 (281)
Q Consensus        37 ~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~---~~~vGvi~~~dll~~~~~~~~~~~~~-------  106 (281)
                      ...+++|+|+|+++++++.+++++.+|.++|.+++++++||+|+   ++++|+|+..|++.............       
T Consensus         9 ~~~~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~   88 (250)
T 2d4z_A            9 NKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEA   88 (250)
T ss_dssp             CCSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCB
T ss_pred             ccCCCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcc
Confidence            45578999999999999999999999999999999999999985   58999999999987654432110000       


Q ss_pred             ----------------hhhHHHHHhhHh-----hh-----hCC-------------------------------------
Q 023512          107 ----------------GKAIAAAVEGVE-----KH-----WGT-------------------------------------  123 (281)
Q Consensus       107 ----------------~~~~~~~~~~~~-----~~-----~~~-------------------------------------  123 (281)
                                      ............     +.     .+.                                     
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (250)
T 2d4z_A           89 DEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFE  168 (250)
T ss_dssp             CCC---------------------------------------------------------------------------CC
T ss_pred             cccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccc
Confidence                            000000000000     00     000                                     


Q ss_pred             CCCChhhHHHHHHHhhcCCCc--c-ccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHH
Q 023512          124 SISGPNTFIETLRERMFRPSL--S-TIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRV  199 (281)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~v--~-~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~  199 (281)
                      ....+.+. ..+.......++  . .+|.  +.++++.+++++.++..+|...|.+++||++.|+++||||++|+++.+
T Consensus       169 ~~i~~~~~-~~~~~~~l~~~Vdl~~~~md--~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~GrLVGIVTrkDl~kai  244 (250)
T 2d4z_A          169 EMLTLEEI-YRWEQREKNVVVNFETCRID--QSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQAAI  244 (250)
T ss_dssp             SCCBHHHH-HHHHHHHTTCBCCTTSSCEE--CCSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred             cccChhhh-hhHHHHhcCceecccccccc--CCCeEECCCCcHHHHHHHHHHhCCeEEEEEECCEEEEEEEHHHHHHHH
Confidence            00001111 111111122333  3 3577  779999999999999999999999999999999999999999998444

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.72  E-value=8e-17  Score=126.67  Aligned_cols=149  Identities=16%  Similarity=0.155  Sum_probs=108.5

Q ss_pred             CcccccccccCC----CeEe--cCCchHHHHHHHhHhCCCcEeeEe--e-CCeEEEEEehHHHHHHHHHHHHHHHHhhhh
Q 023512           39 EETPVSKVMTRN----PTFV--LSDTLAVEALQKMVQGKFRHLPVV--E-NGEVIALLDIAKCLYDAIARMERAAEKGKA  109 (281)
Q Consensus        39 ~~~~v~dim~~~----~~~v--~~~~~l~~a~~~m~~~~~~~~pV~--d-~~~~vGvi~~~dll~~~~~~~~~~~~~~~~  109 (281)
                      .+.+++++|++.    ++++  ++++++.+|+++|.+++++.+||+  | +++++|+|+..|++........    ....
T Consensus         9 ~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~----~~~~   84 (185)
T 2j9l_A            9 HKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARK----KQDG   84 (185)
T ss_dssp             CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHT----SCSC
T ss_pred             ccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcc----cCCC
Confidence            478999999987    7888  999999999999999999999999  5 4899999999999876432110    0000


Q ss_pred             HHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEe
Q 023512          110 IAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGI  189 (281)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gi  189 (281)
                         ...+....+... .+..     ........++.++|.  +++.++++++++.++++.|.+++.+++||+++|+++|+
T Consensus        85 ---~~~~~~~~~~~~-~~~~-----~~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~g~~vGi  153 (185)
T 2j9l_A           85 ---VVSTSIIYFTEH-SPPL-----PPYTPPTLKLRNILD--LSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGI  153 (185)
T ss_dssp             ---CCTTCEEECSSS-CCCC-----CTTCCCCEECGGGEE--SSCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEE
T ss_pred             ---ccccceeecccC-Cccc-----ccccccCccHHHhhC--cCCeEeCCCCCHHHHHHHHHhCCCcEEEEEECCEEEEE
Confidence               000000000000 0000     000122346888897  67999999999999999999999999999999999999


Q ss_pred             eeHHHHHHHHHhc
Q 023512          190 LTSKDILMRVISQ  202 (281)
Q Consensus       190 vt~~di~~~~~~~  202 (281)
                      ||..|+++.+...
T Consensus       154 it~~dll~~l~~~  166 (185)
T 2j9l_A          154 ITKKDVLKHIAQM  166 (185)
T ss_dssp             EEHHHHHHHHHHH
T ss_pred             EEHHHHHHHHHHh
Confidence            9999998655543

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.72  E-value=1.6e-17  Score=123.63  Aligned_cols=120  Identities=18%  Similarity=0.194  Sum_probs=101.1

Q ss_pred             cccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHh
Q 023512           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (281)
Q Consensus        40 ~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d-~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (281)
                      -.+++++|.+++.++++++++.+|++.|.+++++.+||+| +++++|+++..|++......                   
T Consensus         7 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-------------------   67 (133)
T 1y5h_A            7 MTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAA-------------------   67 (133)
T ss_dssp             -CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGG-------------------
T ss_pred             hcCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhc-------------------
Confidence            4589999999999999999999999999999999999997 59999999999987321100                   


Q ss_pred             hhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHH
Q 023512          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILM  197 (281)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~  197 (281)
                         +.              .....++.++|.  +++.++++++++.++++.|.+++.+++||+++|+++|++|..|+++
T Consensus        68 ---~~--------------~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~g~~~Giit~~dil~  127 (133)
T 1y5h_A           68 ---GL--------------DPNTATAGELAR--DSIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIAR  127 (133)
T ss_dssp             ---TC--------------CTTTSBHHHHHT--TCCCCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             ---CC--------------CccccCHHHHhc--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHH
Confidence               00              012345677776  6789999999999999999999999999999899999999999984

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.71  E-value=9.9e-17  Score=120.83  Aligned_cols=127  Identities=17%  Similarity=0.254  Sum_probs=101.1

Q ss_pred             Ccccccc---cccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHH
Q 023512           39 EETPVSK---VMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (281)
Q Consensus        39 ~~~~v~d---im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~  114 (281)
                      .+.++++   +|.++++++++++++.+|++.|.+++++.+||+|+ ++++|+++..|++........             
T Consensus         6 ~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-------------   72 (144)
T 2nyc_A            6 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIY-------------   72 (144)
T ss_dssp             GGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC---------------
T ss_pred             hhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhccccc-------------
Confidence            4668888   88899999999999999999999999999999984 899999999999764211000             


Q ss_pred             hhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCC----CceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEe
Q 023512          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEK----SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGI  189 (281)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~----~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gi  189 (281)
                                             .....++.++|.+.    .++.++++++++.++++.|.+++.+++||++ +|+++|+
T Consensus        73 -----------------------~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Gi  129 (144)
T 2nyc_A           73 -----------------------NDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGV  129 (144)
T ss_dssp             -------------------------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEE
T ss_pred             -----------------------ccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEE
Confidence                                   01122355555421    1688999999999999999999999999999 8999999


Q ss_pred             eeHHHHHHHHHh
Q 023512          190 LTSKDILMRVIS  201 (281)
Q Consensus       190 vt~~di~~~~~~  201 (281)
                      ||..|+++.+..
T Consensus       130 it~~dil~~l~~  141 (144)
T 2nyc_A          130 LTLSDILKYILL  141 (144)
T ss_dssp             EEHHHHHHHHHH
T ss_pred             EEHHHHHHHHHh
Confidence            999999865543

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.71  E-value=3.6e-17  Score=128.07  Aligned_cols=150  Identities=16%  Similarity=0.202  Sum_probs=108.1

Q ss_pred             cccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 023512           40 ETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (281)
Q Consensus        40 ~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (281)
                      ..+++++|.+  +++++++++++.+|+++|.+++++.+||+|+ ++++|+|+..|+++.........  ......   . 
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~--~~~~~~---~-   76 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQ--NDTNLF---P-   76 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC---------------------
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccC--Cccccc---c-
Confidence            3589999998  8999999999999999999999999999995 89999999999974311110000  000000   0 


Q ss_pred             HhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHH
Q 023512          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (281)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di  195 (281)
                         ..+..... ..............++.++|.  +++.++++++++.++++.|.+++++++||++ +|+++|+||..|+
T Consensus        77 ---~~~~~~~~-~~~~~~~~~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~di  150 (180)
T 3sl7_A           77 ---DVDSTWKT-FNELQKLISKTYGKVVGDLMT--PSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNV  150 (180)
T ss_dssp             -------CCCS-HHHHHHHHHTTTTCBHHHHSE--ESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHH
T ss_pred             ---cccchhhh-hHHHHHHHhccccccHHHHhC--CCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHH
Confidence               00000000 111111222334567899997  6788999999999999999999999999999 8999999999999


Q ss_pred             HHHHHh
Q 023512          196 LMRVIS  201 (281)
Q Consensus       196 ~~~~~~  201 (281)
                      ++.+..
T Consensus       151 l~~~~~  156 (180)
T 3sl7_A          151 VRAALQ  156 (180)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            966654

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.71  E-value=1.1e-16  Score=125.91  Aligned_cols=123  Identities=20%  Similarity=0.190  Sum_probs=103.7

Q ss_pred             cCCCCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHH
Q 023512           35 ELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA  113 (281)
Q Consensus        35 ~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d-~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~  113 (281)
                      +..+ ..+++++|.++++++++++++.+|+++|.+++++++||++ +|+++|+++..|++......              
T Consensus         4 gg~~-~~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~--------------   68 (184)
T 1pvm_A            4 GGHM-FMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPR--------------   68 (184)
T ss_dssp             ---C-CCBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGG--------------
T ss_pred             Cccc-ccCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc--------------
Confidence            3344 5899999999999999999999999999999999999998 49999999999997642100              


Q ss_pred             HhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeH
Q 023512          114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS  192 (281)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~  192 (281)
                                            .......++.++|.  +++.++++++++.++++.|.+++.+++||++ +|+++|+||.
T Consensus        69 ----------------------~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~  124 (184)
T 1pvm_A           69 ----------------------NKKPDEVPIRLVMR--KPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTL  124 (184)
T ss_dssp             ----------------------CCCGGGSBGGGTSB--SSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEH
T ss_pred             ----------------------ccCcccCCHHHHhC--CCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEH
Confidence                                  00112346888887  6789999999999999999999999999999 6999999999


Q ss_pred             HHHH
Q 023512          193 KDIL  196 (281)
Q Consensus       193 ~di~  196 (281)
                      .|++
T Consensus       125 ~dll  128 (184)
T 1pvm_A          125 TDLS  128 (184)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            9997

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.70  E-value=8.5e-17  Score=123.55  Aligned_cols=129  Identities=14%  Similarity=0.186  Sum_probs=104.9

Q ss_pred             CCCcccccccccC--CCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHH
Q 023512           37 NLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAA  113 (281)
Q Consensus        37 ~~~~~~v~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~  113 (281)
                      .+...+++++|.+  +++++++++++.+|++.|.+++++.+||+|+ ++++|+++..|++......              
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~--------------   75 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGL--------------   75 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCS--------------
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhh--------------
Confidence            5667899999998  8999999999999999999999999999985 8999999999997642110              


Q ss_pred             HhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeH
Q 023512          114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS  192 (281)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~  192 (281)
                               ..    .     ........++.++|.  +++.++++++++.++++.|.++++  +||++ +|+++|+||.
T Consensus        76 ---------~~----~-----~~~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~  133 (159)
T 1yav_A           76 ---------ER----I-----EFEKLDQITVEEVML--TDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTR  133 (159)
T ss_dssp             ---------SS----B-----CGGGTTTSBHHHHSB--CSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEH
T ss_pred             ---------cc----c-----chhhhccCCHHHhcC--CCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEH
Confidence                     00    0     000123446788887  678999999999999999998876  99999 8999999999


Q ss_pred             HHHHHHHHh
Q 023512          193 KDILMRVIS  201 (281)
Q Consensus       193 ~di~~~~~~  201 (281)
                      .|+++.+..
T Consensus       134 ~dil~~~~~  142 (159)
T 1yav_A          134 RVVLKELNK  142 (159)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999865543

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.69  E-value=1.3e-16  Score=134.27  Aligned_cols=119  Identities=21%  Similarity=0.309  Sum_probs=107.3

Q ss_pred             cCCCccccccCCCceeEeCCCCcHHHHHHHHHHc-----CccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccc
Q 023512          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK  213 (281)
Q Consensus       140 ~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~  213 (281)
                      ...++.++|+  +++.+++++.++.++++.|.++     +++++||++ +|+++|+||.+|++..       ....++.+
T Consensus       135 ~~~~v~~iM~--~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~-------~~~~~v~~  205 (286)
T 2oux_A          135 EDETAGAIMT--TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN-------DDDTLIAD  205 (286)
T ss_dssp             CTTBHHHHCB--SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS-------CTTSBHHH
T ss_pred             ChHHHHHhCC--CCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC-------CCCCcHHH
Confidence            4567889998  7899999999999999999987     788899999 8999999999999631       22458999


Q ss_pred             cccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       214 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      +|+++++++++++++.++++.|.+++.+++||+|++|+++|+||..|+++....
T Consensus       206 im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          206 ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             HcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988653

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.69  E-value=2.5e-16  Score=132.04  Aligned_cols=120  Identities=22%  Similarity=0.300  Sum_probs=106.6

Q ss_pred             cCCCccccccCCCceeEeCCCCcHHHHHHHHHHc-----CccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccc
Q 023512          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK  213 (281)
Q Consensus       140 ~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~  213 (281)
                      ...++.++|+  +++.+++++.++.++++.|.+.     ++.++||++ +|+++|+||.+|++..       ....++.+
T Consensus       133 ~~~~v~~iM~--~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~-------~~~~~v~~  203 (278)
T 2yvy_A          133 EEDEAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA-------DPRTRVAE  203 (278)
T ss_dssp             CTTBGGGTCB--SCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS-------CTTCBSTT
T ss_pred             CcchHHhhcC--CCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC-------CCCCcHHH
Confidence            4567899998  6899999999999999999986     789999999 8999999999999731       12458999


Q ss_pred             cccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       214 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      +|.++++++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.....
T Consensus       204 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~e  258 (278)
T 2yvy_A          204 IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE  258 (278)
T ss_dssp             TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC---
T ss_pred             HhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999986543

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.67  E-value=3.2e-16  Score=128.73  Aligned_cols=125  Identities=15%  Similarity=0.099  Sum_probs=103.9

Q ss_pred             cCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeC---CeeeEeeeHHHHHHHHHhc----CC---C----
Q 023512          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE---NKPRGILTSKDILMRVISQ----NL---P----  205 (281)
Q Consensus       140 ~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~---~~~~Givt~~di~~~~~~~----~~---~----  205 (281)
                      ...++.++|+  +++.++.+++++.+|.++|.+++++.+||+++   ++++|+||.+|+++.+...    ..   +    
T Consensus        11 ~~~~v~diMt--~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~   88 (250)
T 2d4z_A           11 YNIQVGDIMV--RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEA   88 (250)
T ss_dssp             SSCBTTSSSB--SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCB
T ss_pred             CCCChHHhcC--CCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcc
Confidence            3456899998  78999999999999999999999999999993   6899999999998543211    00   0    


Q ss_pred             ----------------------C---------------------------------------------------------
Q 023512          206 ----------------------A---------------------------------------------------------  206 (281)
Q Consensus       206 ----------------------~---------------------------------------------------------  206 (281)
                                            .                                                         
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (250)
T 2d4z_A           89 DEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFE  168 (250)
T ss_dssp             CCC---------------------------------------------------------------------------CC
T ss_pred             cccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccc
Confidence                                  0                                                         


Q ss_pred             ---------------ccccc--c-ccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          207 ---------------DSTLV--E-KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       207 ---------------~~~~v--~-~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                                     ...++  . .+|++.|+++.+++++.++..+|...+++++||++ .|+++||||++||++++..
T Consensus       169 ~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~~  246 (250)
T 2d4z_A          169 EMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIEG  246 (250)
T ss_dssp             SCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             cccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                           01122  2 36889999999999999999999999999999998 7999999999999999764

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.66  E-value=4.8e-16  Score=130.78  Aligned_cols=122  Identities=14%  Similarity=0.221  Sum_probs=106.8

Q ss_pred             hcCCCCcccccccccCCCeEecCCchHHHHHHHhHhC-----CCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhh
Q 023512           34 RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKG  107 (281)
Q Consensus        34 ~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~-----~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~  107 (281)
                      ....+.+.+++++|+++++++++++++.+|++.|.++     +++.+||+|+ ++++|+|+..|++..            
T Consensus       130 ~ll~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~------------  197 (286)
T 2oux_A          130 ELLHYEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN------------  197 (286)
T ss_dssp             HHTTSCTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS------------
T ss_pred             HHhcCChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC------------
Confidence            3447778899999999999999999999999999987     8889999985 999999999998642            


Q ss_pred             hhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCee
Q 023512          108 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKP  186 (281)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~  186 (281)
                                                     ....++.++|.  +++.++++++++.++++.|.+++.+++||++ +|++
T Consensus       198 -------------------------------~~~~~v~~im~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~l  244 (286)
T 2oux_A          198 -------------------------------DDDTLIADILN--ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHL  244 (286)
T ss_dssp             -------------------------------CTTSBHHHHSB--SCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBE
T ss_pred             -------------------------------CCCCcHHHHcC--CCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeE
Confidence                                           01235777886  6789999999999999999999999999999 8999


Q ss_pred             eEeeeHHHHHHHHH
Q 023512          187 RGILTSKDILMRVI  200 (281)
Q Consensus       187 ~Givt~~di~~~~~  200 (281)
                      +|+||..|++..+.
T Consensus       245 vGiIT~~Dil~~i~  258 (286)
T 2oux_A          245 LGIVTVDDIIDVID  258 (286)
T ss_dssp             EEEEEHHHHHHHHH
T ss_pred             EEEEEHHHHHHHHH
Confidence            99999999985544

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.65  E-value=1.1e-15  Score=128.16  Aligned_cols=121  Identities=20%  Similarity=0.212  Sum_probs=105.7

Q ss_pred             cCCCCcccccccccCCCeEecCCchHHHHHHHhHhC-----CCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhh
Q 023512           35 ELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGK  108 (281)
Q Consensus        35 ~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~-----~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~  108 (281)
                      ...+.+.+++++|+++++++++++++.+|++.|.++     +++.+||+++ ++++|+|+..|++..             
T Consensus       129 ~l~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~-------------  195 (278)
T 2yvy_A          129 LARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA-------------  195 (278)
T ss_dssp             HHHSCTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS-------------
T ss_pred             HHCCCcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC-------------
Confidence            335567899999999999999999999999999987     7899999985 999999999998642             


Q ss_pred             hHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeee
Q 023512          109 AIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPR  187 (281)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~  187 (281)
                                                    ....++.++|.  +++.++++++++.++++.|.+++.+.+||+| +|+++
T Consensus       196 ------------------------------~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lv  243 (278)
T 2yvy_A          196 ------------------------------DPRTRVAEIMN--PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLV  243 (278)
T ss_dssp             ------------------------------CTTCBSTTTSB--SSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEE
T ss_pred             ------------------------------CCCCcHHHHhC--CCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEE
Confidence                                          12346888997  6799999999999999999999999999999 89999


Q ss_pred             EeeeHHHHHHHHH
Q 023512          188 GILTSKDILMRVI  200 (281)
Q Consensus       188 Givt~~di~~~~~  200 (281)
                      |+||..|++..+.
T Consensus       244 GivT~~Dil~~i~  256 (278)
T 2yvy_A          244 GIVTVDDVLDVLE  256 (278)
T ss_dssp             EEEEHHHHHHHC-
T ss_pred             EEEEHHHHHHHHH
Confidence            9999999984443

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.65  E-value=1.2e-16  Score=148.23  Aligned_cols=128  Identities=10%  Similarity=-0.028  Sum_probs=106.6

Q ss_pred             cCCCccccccCCCceeEeCCCCcHHHHHHHHH-HcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCC------------
Q 023512          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKML-ELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP------------  205 (281)
Q Consensus       140 ~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~-~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~------------  205 (281)
                      ...++.++|+|.+++.++++++++.++.+.|. +++++.+||+| +++++|+||.+|+++.+......            
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~  530 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLV  530 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC---------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhccccccccccee
Confidence            34568999987788999999999999999999 79999999999 89999999999997433221000            


Q ss_pred             ----------------------------------CccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCc
Q 023512          206 ----------------------------------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD  251 (281)
Q Consensus       206 ----------------------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~  251 (281)
                                                        ....+++++|++++.++++++++.++.+.|.+++.+++||+ ++|+
T Consensus       531 ~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~  609 (632)
T 3org_A          531 LLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGK  609 (632)
T ss_dssp             ----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTE
T ss_pred             ccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCE
Confidence                                              00013778999999999999999999999999999999999 6899


Q ss_pred             EEEEEEhhhHHHhhhch
Q 023512          252 VVDVVDVIHITHAAVAT  268 (281)
Q Consensus       252 ~~Gvis~~di~~~~~~~  268 (281)
                      ++|+||++|++++..+.
T Consensus       610 lvGIVT~~Dll~~~~~~  626 (632)
T 3org_A          610 LVGIVEREDVAYGYSNS  626 (632)
T ss_dssp             EEEEEEGGGTEECCCC-
T ss_pred             EEEEEehhhHHHHHhhh
Confidence            99999999999987765

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.64  E-value=8.5e-16  Score=139.84  Aligned_cols=123  Identities=11%  Similarity=0.101  Sum_probs=108.3

Q ss_pred             CCCccccccCCCceeEeCCC-CcHHHHHHHHHHcCccEEEEEe--CCeeeEeeeHHHHHHHHHhcCCCCccccccccccC
Q 023512          141 RPSLSTIIPEKSKVVTISPT-DTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP  217 (281)
Q Consensus       141 ~~~v~~~m~~~~~~~~v~~~-~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~  217 (281)
                      ..++.++|+  +++.++.++ +++.++++.|.+++++++||++  +++++|+||.+|+++.+..... ....+++++|++
T Consensus       383 ~~~V~diM~--~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~-~~~~~V~~im~~  459 (527)
T 3pc3_A          383 SLAIAELEL--PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNR-QQSDPAIKALNK  459 (527)
T ss_dssp             TSBGGGGCC--CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCC-CTTSBGGGGEET
T ss_pred             CCcHHHhCc--CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccC-cCCCcHHHHhcC
Confidence            467899998  789999999 9999999999999999999999  7899999999999866665433 235689999999


Q ss_pred             CCeeeeCCCCHHHHHHHhHhCCCCeeeEecCC----CcEEEEEEhhhHHHhhhch
Q 023512          218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRD----GDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       218 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~----~~~~Gvis~~di~~~~~~~  268 (281)
                      +++++++++++.+++++|.++++  +||+|++    |+++|+||..||+++..+.
T Consensus       460 ~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~  512 (527)
T 3pc3_A          460 RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAG  512 (527)
T ss_dssp             TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTC
T ss_pred             CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhc
Confidence            99999999999999999977664  7999974    8999999999999996654

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.62  E-value=3.4e-15  Score=133.80  Aligned_cols=120  Identities=22%  Similarity=0.300  Sum_probs=108.0

Q ss_pred             cCCCccccccCCCceeEeCCCCcHHHHHHHHHHc-----CccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccc
Q 023512          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK  213 (281)
Q Consensus       140 ~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~  213 (281)
                      ...++.++|+  +++.+++++.|+.++++.|++.     +++++||+| +++++|++|.+|++..       ..+.++++
T Consensus       153 ~~~~v~~iM~--~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~-------~~~~~v~d  223 (473)
T 2zy9_A          153 EEDEAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA-------DPRTRVAE  223 (473)
T ss_dssp             CTTBSTTTCB--SCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS-------CTTSBGGG
T ss_pred             CCCCHHHhCC--CCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC-------CCCCcHHH
Confidence            4567899998  6899999999999999999986     579999999 8999999999999731       12458999


Q ss_pred             cccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       214 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      +|+++++++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.....
T Consensus       224 im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~e  278 (473)
T 2zy9_A          224 IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE  278 (473)
T ss_dssp             TSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred             HhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999986554

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.59  E-value=6.3e-15  Score=134.14  Aligned_cols=124  Identities=12%  Similarity=0.201  Sum_probs=105.1

Q ss_pred             CCcccccccccCCCeEecCC-chHHHHHHHhHhCCCcEeeEee--CCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHH
Q 023512           38 LEETPVSKVMTRNPTFVLSD-TLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (281)
Q Consensus        38 ~~~~~v~dim~~~~~~v~~~-~~l~~a~~~m~~~~~~~~pV~d--~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~  114 (281)
                      +.+.+|+++|+++++++.++ +++.+|+++|.+++++++||+|  +++++|+|+..|+++.....               
T Consensus       381 l~~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~---------------  445 (527)
T 3pc3_A          381 WWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSM---------------  445 (527)
T ss_dssp             TTTSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHH---------------
T ss_pred             ccCCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhc---------------
Confidence            55789999999999999999 9999999999999999999999  59999999999998764321               


Q ss_pred             hhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeC-----CeeeEe
Q 023512          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE-----NKPRGI  189 (281)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-----~~~~Gi  189 (281)
                                            ......++.++|.  +++.++++++++.++++.|.++++  +||+++     |+++|+
T Consensus       446 ----------------------~~~~~~~V~~im~--~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGI  499 (527)
T 3pc3_A          446 ----------------------NRQQSDPAIKALN--KRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKAL  499 (527)
T ss_dssp             ----------------------CCCTTSBGGGGEE--TTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEE
T ss_pred             ----------------------cCcCCCcHHHHhc--CCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEE
Confidence                                  0122446899998  789999999999999999977665  688884     899999


Q ss_pred             eeHHHHHHHHHhc
Q 023512          190 LTSKDILMRVISQ  202 (281)
Q Consensus       190 vt~~di~~~~~~~  202 (281)
                      ||..|+++.+...
T Consensus       500 VT~~Dll~~l~~~  512 (527)
T 3pc3_A          500 ATKLDVTTFIAAG  512 (527)
T ss_dssp             EEHHHHHHHHHTC
T ss_pred             EEHHHHHHHHHhc
Confidence            9999999555543

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.57  E-value=1.6e-14  Score=129.42  Aligned_cols=123  Identities=20%  Similarity=0.210  Sum_probs=107.5

Q ss_pred             hcCCCCcccccccccCCCeEecCCchHHHHHHHhHhC-----CCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhh
Q 023512           34 RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKG  107 (281)
Q Consensus        34 ~~~~~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~-----~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~  107 (281)
                      +...+.+.+++++|+++++++++++++.+|++.|.++     +++.+||+|+ ++++|+++.+|++..            
T Consensus       148 ~~l~~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~------------  215 (473)
T 2zy9_A          148 ALARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA------------  215 (473)
T ss_dssp             HHHTSCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS------------
T ss_pred             HHhcCCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC------------
Confidence            3446678899999999999999999999999999986     5789999985 899999999998642            


Q ss_pred             hhHHHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCee
Q 023512          108 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKP  186 (281)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~  186 (281)
                                                     ....++.++|.  +++.++++++++.++++.|.+++...+||+| +|++
T Consensus       216 -------------------------------~~~~~v~dim~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~l  262 (473)
T 2zy9_A          216 -------------------------------DPRTRVAEIMN--PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRL  262 (473)
T ss_dssp             -------------------------------CTTSBGGGTSB--SSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBE
T ss_pred             -------------------------------CCCCcHHHHhC--CCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEE
Confidence                                           11236889997  6799999999999999999999999999999 8999


Q ss_pred             eEeeeHHHHHHHHHh
Q 023512          187 RGILTSKDILMRVIS  201 (281)
Q Consensus       187 ~Givt~~di~~~~~~  201 (281)
                      +|+||..|++..+..
T Consensus       263 vGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          263 VGIVTVDDVLDVLEA  277 (473)
T ss_dssp             EEEEEHHHHHHHHHH
T ss_pred             EEEEehHhhHHHHHH
Confidence            999999999855443

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.57  E-value=2.1e-14  Score=129.52  Aligned_cols=115  Identities=25%  Similarity=0.308  Sum_probs=103.0

Q ss_pred             cccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe---CCeeeEeeeHHHHHHHHHhcCCCCccccccccccC-CCe
Q 023512          145 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP-NPE  220 (281)
Q Consensus       145 ~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~-~~~  220 (281)
                      .+.|.  .++.++++++|+.++++.|.+++++++||++   +++++|+||.+|++ .     ......++.++|++ +++
T Consensus       116 ~~~m~--~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~-~-----~~~~~~~V~~vM~~~~~v  187 (511)
T 3usb_A          116 ESGVI--SDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMR-F-----IQDYSIKISDVMTKEQLI  187 (511)
T ss_dssp             SSCSS--SSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHT-T-----CCCSSSBHHHHCCCCCCC
T ss_pred             ccccc--cCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhh-h-----hccCCCcHHHhcccCCCE
Confidence            34555  6789999999999999999999999999999   57999999999995 2     12235689999997 999


Q ss_pred             eeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      +++++.++.++++.|.+++.+.+||+|++|+++|+||..|++++...
T Consensus       188 tv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          188 TAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             CEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence            99999999999999999999999999999999999999999998655

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.56  E-value=2.4e-15  Score=139.48  Aligned_cols=146  Identities=14%  Similarity=0.101  Sum_probs=102.6

Q ss_pred             Cccccccccc--CCCeEecCCchHHHHHHHhH-hCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHH
Q 023512           39 EETPVSKVMT--RNPTFVLSDTLAVEALQKMV-QGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (281)
Q Consensus        39 ~~~~v~dim~--~~~~~v~~~~~l~~a~~~m~-~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~  114 (281)
                      .+.+++|+|+  +++.++++++++.++.+.|. +++++.+||+|+ ++++|+++.+|+.+............... ....
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~-~~~~  529 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAG-HRTL  529 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC---------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhccccccc-ccce
Confidence            5789999999  89999999999999999999 899999999995 99999999999976533221110000000 0000


Q ss_pred             hhHhhhhCCCCCChhhHHHHHHH-------------------h-hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcC
Q 023512          115 EGVEKHWGTSISGPNTFIETLRE-------------------R-MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELR  174 (281)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~-------------------~-~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~  174 (281)
                      .    ..     ....+.+.+..                   . ....++.++|+  +++.++++++++.++++.|.+++
T Consensus       530 ~----~~-----~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt--~~pitV~~~~~l~ea~~~M~~~~  598 (632)
T 3org_A          530 V----LL-----DAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCD--VSPIVVTSYSLVRQLHFLFVMLM  598 (632)
T ss_dssp             --------------------------------------------------CCSCC--CCCCEEETTCBHHHHHHHHHHTC
T ss_pred             e----cc-----CHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhc--CCCceecCCCcHHHHHHHHHhcC
Confidence            0    00     00000000000                   0 11124788998  78899999999999999999999


Q ss_pred             ccEEEEEeCCeeeEeeeHHHHH
Q 023512          175 LSSAVVTVENKPRGILTSKDIL  196 (281)
Q Consensus       175 ~~~~~V~~~~~~~Givt~~di~  196 (281)
                      .+++||+++|+++|+||.+|++
T Consensus       599 i~~lpVve~G~lvGIVT~~Dll  620 (632)
T 3org_A          599 PSMIYVTERGKLVGIVEREDVA  620 (632)
T ss_dssp             CSEEEEEETTEEEEEEEGGGTE
T ss_pred             CCEEEEEECCEEEEEEehhhHH
Confidence            9999999999999999999997

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.56  E-value=4.2e-14  Score=127.52  Aligned_cols=160  Identities=12%  Similarity=0.167  Sum_probs=124.5

Q ss_pred             cccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEee---CCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHh
Q 023512           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (281)
Q Consensus        42 ~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d---~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (281)
                      +.++.|.++++++++++|+.+++++|.+++++.+||+|   +++++|+|+.+|+...                       
T Consensus       114 ~~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~-----------------------  170 (511)
T 3usb_A          114 RSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI-----------------------  170 (511)
T ss_dssp             TSSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC-----------------------
T ss_pred             ccccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh-----------------------
Confidence            34567888999999999999999999999999999998   4799999999998420                       


Q ss_pred             hhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHH
Q 023512          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (281)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~  197 (281)
                                         .....++.++|++ .++++++++.++.++++.|.+++.+.+||+| +|+++|+||.+|+++
T Consensus       171 -------------------~~~~~~V~~vM~~-~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~  230 (511)
T 3usb_A          171 -------------------QDYSIKISDVMTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEK  230 (511)
T ss_dssp             -------------------CCSSSBHHHHCCC-CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHH
T ss_pred             -------------------ccCCCcHHHhccc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHH
Confidence                               1123457888873 4899999999999999999999999999999 999999999999985


Q ss_pred             HHHhcCCCCccccccccccCCCe--eeeCCCCHHHHHHHhHhCCCCeeeEecCCC
Q 023512          198 RVISQNLPADSTLVEKVMTPNPE--CATIDTPIVDALHIMHDGKFLHLPVVDRDG  250 (281)
Q Consensus       198 ~~~~~~~~~~~~~v~~~~~~~~~--~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~  250 (281)
                      .+....      ...+.+.+..+  .+.......+..+.+.+.+.+.+.|-..++
T Consensus       231 ~~~~p~------a~~D~~~rl~V~aavg~~~d~~era~aLveaGvd~I~Id~a~g  279 (511)
T 3usb_A          231 VIEFPN------SAKDKQGRLLVGAAVGVTADAMTRIDALVKASVDAIVLDTAHG  279 (511)
T ss_dssp             HHHCTT------CCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEECSCT
T ss_pred             hhhccc------chhhhccceeeeeeeeeccchHHHHHHHHhhccceEEeccccc
Confidence            544321      23333333332  333344556667788888999887765554

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.54  E-value=5e-15  Score=133.09  Aligned_cols=117  Identities=16%  Similarity=0.175  Sum_probs=90.9

Q ss_pred             ccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcccccccccc-C-CCe
Q 023512          144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-P-NPE  220 (281)
Q Consensus       144 v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~-~-~~~  220 (281)
                      ..++|.  .++.++++++++.++++.|.+++++++||++ +++++|+||.+|++      .......++.++|+ + +++
T Consensus        91 ~~~~m~--~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~------~~~~~~~~v~diM~p~~~~v  162 (496)
T 4fxs_A           91 FEAGVV--THPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVR------FVTDLTKSVAAVMTPKERLA  162 (496)
T ss_dssp             CCC--C--BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHT------TCCCTTSBGGGTSEEGGGCC
T ss_pred             cccccc--cCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHh------hcccCCCcHHHHhcCCCCCE
Confidence            456676  7799999999999999999999999999999 89999999999995      12223568999998 4 589


Q ss_pred             eeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      +++++.++.++++.|.+++++.+||+|++|+++|+||.+|++++...+
T Consensus       163 tv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~~p  210 (496)
T 4fxs_A          163 TVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAESKP  210 (496)
T ss_dssp             EEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CCCT
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhccc
Confidence            999999999999999999999999999999999999999999975543

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.50  E-value=1.7e-15  Score=136.65  Aligned_cols=167  Identities=15%  Similarity=0.102  Sum_probs=25.8

Q ss_pred             cccc-ccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhH
Q 023512           43 VSKV-MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (281)
Q Consensus        43 v~di-m~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~----~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~  117 (281)
                      ..++ |.++++++++++|+.+|+++|.+++++++||+|+    ++++|+|+..|++..  .                   
T Consensus        98 ~~e~gM~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~--~-------------------  156 (503)
T 1me8_A           98 NFKAGFVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID--L-------------------  156 (503)
T ss_dssp             TTTC----------------------------------------------------------------------------
T ss_pred             hcccCcccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh--h-------------------
Confidence            3445 9999999999999999999999999999999985    799999999998642  0                   


Q ss_pred             hhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                                          .....++.++|++..++.++++++++.++++.|.+++.+.+||+| +|+++|+||.+|++
T Consensus       157 --------------------~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil  216 (503)
T 1me8_A          157 --------------------TQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYD  216 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------ccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHH
Confidence                                001235788887433499999999999999999999999999999 89999999999998


Q ss_pred             HHHHhcCCCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEE
Q 023512          197 MRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDV  255 (281)
Q Consensus       197 ~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gv  255 (281)
                      +.+..... . ..+...++.  ...+.. ....+..+.|.+.+.+.++|-..+|...|+
T Consensus       217 ~~~~~~~~-~-~d~~~~l~v--~a~v~~-~~~~e~~~~l~e~gv~~l~Vd~~~g~~~~~  270 (503)
T 1me8_A          217 RSQVCHNE-L-VDSQKRYLV--GAGINT-RDFRERVPALVEAGADVLCIDSSDGFSEWQ  270 (503)
T ss_dssp             -----CCC-C-BCTTSCBCC--EEEECS-SSHHHHHHHHHHHTCSEEEECCSCCCSHHH
T ss_pred             Hhhhcccc-h-hcccccccc--ccccCc-hhHHHHHHHHHhhhccceEEecccCcccch
Confidence            55543221 1 111222221  123344 556667888888898877663334554443

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.49  E-value=3e-13  Score=122.13  Aligned_cols=115  Identities=22%  Similarity=0.323  Sum_probs=103.3

Q ss_pred             cccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe---CCeeeEeeeHHHHHHHHHhcCCCCccccccccccC-CCe
Q 023512          145 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP-NPE  220 (281)
Q Consensus       145 ~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~-~~~  220 (281)
                      .++|.  .++.++++++++.++++.|.+++++++||++   +++++|+||.+|++. . .    ....++.++|++ +++
T Consensus        93 ~~im~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~-~-~----~~~~~v~~im~~~~~~  164 (491)
T 1zfj_A           93 ENGVI--IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRF-I-S----DYNAPISEHMTSEHLV  164 (491)
T ss_dssp             TTTTS--SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHH-C-S----CSSSBTTTSCCCSCCC
T ss_pred             HhcCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhh-h-c----cCCCcHHHHcCCCCCE
Confidence            56776  6788999999999999999999999999997   789999999999963 2 1    235689999998 899


Q ss_pred             eeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      ++++++++.++++.|.+++.+.+||+|++|+++|++|..||++....
T Consensus       165 ~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          165 TAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             CEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999998663

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.48  E-value=4.9e-14  Score=115.86  Aligned_cols=56  Identities=23%  Similarity=0.365  Sum_probs=48.4

Q ss_pred             ccccccccc-CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHH
Q 023512           40 ETPVSKVMT-RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYD   95 (281)
Q Consensus        40 ~~~v~dim~-~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~   95 (281)
                      ..+++++|+ +++.++++++++.+|+++|.+++++++||+|+ |+++|+++..|++.+
T Consensus       184 ~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~  241 (245)
T 3l2b_A          184 SLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIST  241 (245)
T ss_dssp             GSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC-----
T ss_pred             CCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhch
Confidence            457999999 89999999999999999999999999999985 999999999999865

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.48  E-value=3e-15  Score=134.41  Aligned_cols=117  Identities=21%  Similarity=0.240  Sum_probs=2.6

Q ss_pred             ccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCcccccccccc-C-CCee
Q 023512          144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-P-NPEC  221 (281)
Q Consensus       144 v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~-~-~~~~  221 (281)
                      +.++|.  .++.++++++|+.+++++|.+++++++||+++++++|+||.+|+. ..     .....++.++|+ + ++++
T Consensus        90 ~~~~m~--~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~-~~-----~~~~~~V~~vMtp~~~~vt  161 (490)
T 4avf_A           90 HETAIV--RDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLR-VK-----PNAGDTVAAIMTPKDKLVT  161 (490)
T ss_dssp             CCC-----------------------------------------------------------------------------
T ss_pred             cccCcc--cCceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhh-hc-----cccCCcHHHHhccCCCCEE
Confidence            566676  678899999999999999999999999999999999999999994 21     122458999998 4 6999


Q ss_pred             eeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       222 v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      +++++++.+++++|.+++++.+||+|++|+++|+||+.|++++..++
T Consensus       162 v~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~p  208 (490)
T 4avf_A          162 AREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKTYP  208 (490)
T ss_dssp             ---------------------------------------------CT
T ss_pred             ECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhccCc
Confidence            99999999999999999999999999999999999999999986544

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.48  E-value=5.8e-14  Score=126.15  Aligned_cols=114  Identities=18%  Similarity=0.269  Sum_probs=88.6

Q ss_pred             cccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhh
Q 023512           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH  120 (281)
Q Consensus        42 ~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (281)
                      +++++|.++++++++++++.+++++|.+++++.+||+|+ ++++|+|+.+|+...                         
T Consensus        90 ~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~-------------------------  144 (496)
T 4fxs_A           90 IFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV-------------------------  144 (496)
T ss_dssp             HCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC-------------------------
T ss_pred             ccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc-------------------------
Confidence            557889999999999999999999999999999999995 999999999998411                         


Q ss_pred             hCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHH
Q 023512          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (281)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~  197 (281)
                                       .....++.++|++.+++.+++++.++.++++.|.+++...+||+| +|+++|+||.+|+++
T Consensus       145 -----------------~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~  205 (496)
T 4fxs_A          145 -----------------TDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHK  205 (496)
T ss_dssp             -----------------CCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC----
T ss_pred             -----------------ccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHH
Confidence                             112345888997434799999999999999999999999999999 899999999999973

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.47  E-value=4.2e-15  Score=134.12  Aligned_cols=112  Identities=22%  Similarity=0.224  Sum_probs=0.0

Q ss_pred             ccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-C---CeeeEeeeHHHHHHHHHhcCCCCccccccccccCC--Cee
Q 023512          148 IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN--PEC  221 (281)
Q Consensus       148 m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~---~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~--~~~  221 (281)
                      |.  +++.++++++|+.++++.|.+++++++||++ +   ++++|+||.+|++. .    ......++.++|++.  +++
T Consensus       103 M~--~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~-~----~~~~~~~V~diM~~~~~~~t  175 (503)
T 1me8_A          103 FV--VSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPI-D----LTQTETKVSDMMTPFSKLVT  175 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cc--cCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHh-h----hccccCcHHHHhCCCCCCEE
Confidence            65  6789999999999999999999999999999 5   89999999999963 2    122345899999987  999


Q ss_pred             eeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (281)
Q Consensus       222 v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~  266 (281)
                      +++++++.++++.|.+++.+.+||+|++|+++|+||.+||+++..
T Consensus       176 v~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  220 (503)
T 1me8_A          176 AHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQV  220 (503)
T ss_dssp             ---------------------------------------------
T ss_pred             EcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhh
Confidence            999999999999999999999999999999999999999998754

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.46  E-value=4.9e-15  Score=130.60  Aligned_cols=110  Identities=20%  Similarity=0.269  Sum_probs=0.9

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCccEEEEEe----CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCC
Q 023512          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV----ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTP  227 (281)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~----~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~  227 (281)
                      .+++++.|+.|+.+++++|.+++++.+||++    +++++||||.+|+.  +.     ....+++++|++++++++.+.+
T Consensus       146 ~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~r--f~-----d~~~~V~evMT~~lvt~~~~~~  218 (556)
T 4af0_A          146 TDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQ--FQ-----DAETPIKSVMTTEVVTGSSPIT  218 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccc--cc-----ccceEhhhhcccceEEecCCCC
Confidence            6699999999999999999999999999998    46899999999993  21     2245899999999999999999


Q ss_pred             HHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          228 IVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       228 l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      +++|.++|.++++..+||||++|+++|+||++|+.+...++
T Consensus       219 leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~~p  259 (556)
T 4af0_A          219 LEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQNYP  259 (556)
T ss_dssp             ---------------------------------------CT
T ss_pred             HHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhhCC
Confidence            99999999999999999999999999999999999876544

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.45  E-value=7.6e-15  Score=132.63  Aligned_cols=117  Identities=25%  Similarity=0.337  Sum_probs=6.3

Q ss_pred             ccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccC--CCe
Q 023512          144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPE  220 (281)
Q Consensus       144 v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~--~~~  220 (281)
                      +.++|.  +++.++++++++.++++.|.+++++.+||+| +++++|+||.+|+++ . .    ....++.++|++  +++
T Consensus        97 ~~~iM~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~-~-~----~~~~~v~~im~~~~~~~  168 (494)
T 1vrd_A           97 TENGII--YDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRF-E-K----NLSKKIKDLMTPREKLI  168 (494)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             HhhcCc--cCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHh-h-c----CCCCcHHHHhCCCCCCe
Confidence            466776  6799999999999999999999999999999 789999999999963 2 1    124589999998  999


Q ss_pred             eeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      ++++++++.++++.|.+++++.+||+|++|+++|+||..|++++...+
T Consensus       169 ~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~  216 (494)
T 1vrd_A          169 VAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHP  216 (494)
T ss_dssp             ----------------------------------------CHHHHTCT
T ss_pred             EECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhccc
Confidence            999999999999999999999999999999999999999999986544

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.44  E-value=3.6e-13  Score=88.12  Aligned_cols=69  Identities=30%  Similarity=0.415  Sum_probs=63.1

Q ss_pred             eeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeee
Q 023512          154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA  222 (281)
Q Consensus       154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v  222 (281)
                      ++++.+++|+.+|++.|.+++++++||+++|+++|++|.+|+++++........+.+++++|+++++++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEGDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence            688999999999999999999999999999999999999999878877777777789999999988764

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.44  E-value=5.9e-14  Score=126.04  Aligned_cols=156  Identities=19%  Similarity=0.171  Sum_probs=18.4

Q ss_pred             cccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhh
Q 023512           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHW  121 (281)
Q Consensus        42 ~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (281)
                      +++++|.++++++++++++.+|+++|.+++++.+||+|+++++|+|+..|+...                          
T Consensus        89 ~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~~~--------------------------  142 (490)
T 4avf_A           89 KHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLRVK--------------------------  142 (490)
T ss_dssp             HCCC----------------------------------------------------------------------------
T ss_pred             ccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhhhc--------------------------
Confidence            578889999999999999999999999999999999999999999999998421                          


Q ss_pred             CCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHH
Q 023512          122 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI  200 (281)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~  200 (281)
                                      .....++.++|++..++.++++++++.++++.|.+++.+.+||+| +|+++|+||.+|+++...
T Consensus       143 ----------------~~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          143 ----------------PNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------cccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence                            011235788887434799999999999999999999999999999 999999999999984332


Q ss_pred             hcCCCCccccccccccC--CCeeeeCCCCHHHHHHHhHhCCCCeeeE
Q 023512          201 SQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPV  245 (281)
Q Consensus       201 ~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~V  245 (281)
                      ....      ..+...+  -...+.......+..+.+.+.+.+.+.+
T Consensus       207 ~p~a------~kd~~grl~v~aavG~~~~~~~~a~~l~~aG~d~I~i  247 (490)
T 4avf_A          207 YPLA------SKDEQGRLRVGAAVGTGADTGERVAALVAAGVDVVVV  247 (490)
T ss_dssp             CTTC------CBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEE
T ss_pred             Ccch------hhhccCcceeeeeeccccchHHHHHHHhhcccceEEe
Confidence            1111      1111111  1122333334455556666677776644

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.43  E-value=3e-12  Score=115.60  Aligned_cols=115  Identities=17%  Similarity=0.244  Sum_probs=101.1

Q ss_pred             cccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEee--C-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHh
Q 023512           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (281)
Q Consensus        42 ~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d--~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (281)
                      .++++|.++++++++++++.+++++|.+++++.+||+|  + ++++|+|+.+|++..                       
T Consensus        91 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~-----------------------  147 (491)
T 1zfj_A           91 RSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI-----------------------  147 (491)
T ss_dssp             HHTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC-----------------------
T ss_pred             hHHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhh-----------------------
Confidence            35789999999999999999999999999999999998  4 999999999998642                       


Q ss_pred             hhhCCCCCChhhHHHHHHHhhcCCCccccccCCC-ceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKS-KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                                         .....++.++|+  + ++.++++++++.++++.|.+++.+.+||+| +|+++|++|..|++
T Consensus       148 -------------------~~~~~~v~~im~--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil  206 (491)
T 1zfj_A          148 -------------------SDYNAPISEHMT--SEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIE  206 (491)
T ss_dssp             -------------------SCSSSBTTTSCC--CSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHH
T ss_pred             -------------------ccCCCcHHHHcC--CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHH
Confidence                               002345888897  4 789999999999999999999999999999 89999999999998


Q ss_pred             HHHH
Q 023512          197 MRVI  200 (281)
Q Consensus       197 ~~~~  200 (281)
                      +.+.
T Consensus       207 ~~~~  210 (491)
T 1zfj_A          207 KVIE  210 (491)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5544

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.39  E-value=1.5e-13  Score=124.20  Aligned_cols=156  Identities=17%  Similarity=0.250  Sum_probs=21.4

Q ss_pred             cccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhh
Q 023512           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH  120 (281)
Q Consensus        42 ~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (281)
                      +++++|.++++++++++++.+|+++|.+++++.+||+|+ ++++|+|+..|+....                        
T Consensus        96 ~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~------------------------  151 (494)
T 1vrd_A           96 KTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEK------------------------  151 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhc------------------------
Confidence            468889999999999999999999999999999999985 8999999999986410                        


Q ss_pred             hCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHH
Q 023512          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  199 (281)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~  199 (281)
                                        ....++.++|++.+++.++++++++.++++.|.+++...+||+| +|+++|+||..|+++.+
T Consensus       152 ------------------~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~  213 (494)
T 1vrd_A          152 ------------------NLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVI  213 (494)
T ss_dssp             ---------------------------------------------------------------------------CHHHH
T ss_pred             ------------------CCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhh
Confidence                              01124778887323899999999999999999999999999999 89999999999998554


Q ss_pred             HhcCCCCccccccccccCCC--eeeeCCCCHHHHHHHhHhCCCCeeeE
Q 023512          200 ISQNLPADSTLVEKVMTPNP--ECATIDTPIVDALHIMHDGKFLHLPV  245 (281)
Q Consensus       200 ~~~~~~~~~~~v~~~~~~~~--~~v~~~~~l~~~~~~~~~~~~~~l~V  245 (281)
                      .....      .++...+-.  ..+.......+....+.+.+.+.+.+
T Consensus       214 ~~~~~------~~D~~~~l~vga~ig~~~~~~~~a~~l~~aGvd~v~i  255 (494)
T 1vrd_A          214 EHPNA------ARDEKGRLLVGAAVGTSPETMERVEKLVKAGVDVIVI  255 (494)
T ss_dssp             TCTTC------CBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEE
T ss_pred             ccccc------cccchhhhccccccCcCHhHHHHHHHHHHhCCCEEEE
Confidence            33211      111100000  01223345566777777777776654

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.35  E-value=2.9e-14  Score=129.35  Aligned_cols=120  Identities=23%  Similarity=0.281  Sum_probs=71.9

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeC----CeeeEeeeHHHHHHHHHhcCCCCccccccccccC-
Q 023512          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP-  217 (281)
Q Consensus       143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~-  217 (281)
                      ++.++|.  +++.++.+++++.++++.|.+++++.+||+|+    ++++|+||.+|+. ....   .....++.++|++ 
T Consensus       109 ~~~~im~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~-~~~~---~~~~~~v~~vm~~~  182 (514)
T 1jcn_A          109 NFEQGFI--TDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDID-FLAE---KDHTTLLSEVMTPR  182 (514)
T ss_dssp             TCCTTSC--SSCCCCCC-----------------CEESCC--------CCEECTTTTC--------------------CC
T ss_pred             hhhhccc--cCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHH-hhhh---ccCCCCHHHHhCCC
Confidence            4667787  67889999999999999999999999999984    8999999999995 3211   1224589999998 


Q ss_pred             -CCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          218 -NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       218 -~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                       +++++.+++++.++++.|.+++.+.+||+|++|+++|+||++|++++...+
T Consensus       183 ~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~  234 (514)
T 1jcn_A          183 IELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRDYP  234 (514)
T ss_dssp             BCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCCCT
T ss_pred             CCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhhCc
Confidence             999999999999999999999999999999999999999999999876543

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.32  E-value=1.6e-13  Score=123.50  Aligned_cols=112  Identities=29%  Similarity=0.400  Sum_probs=0.9

Q ss_pred             cccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeC
Q 023512          145 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI  224 (281)
Q Consensus       145 ~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~  224 (281)
                      .+.|.  .++.++++++++.++++.|.+++++++||+++++++|+||.+|++.        ....++.++|+++++++++
T Consensus        96 ~~~m~--~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~~~lvGivt~~Dl~~--------~~~~~v~~im~~~~~~v~~  165 (486)
T 2cu0_A           96 ERLIV--EDVITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDIAA--------REGKLVKELMTKEVITVPE  165 (486)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             hhccc--cCceEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHhcc--------CCCCCHHHHccCCCeEECC
Confidence            44565  6789999999999999999999999999999889999999999963        1245899999988999999


Q ss_pred             CCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512          225 DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (281)
Q Consensus       225 ~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~  266 (281)
                      ++++.++++.|.+++.+.+||+|++|+++|+||..||++...
T Consensus       166 ~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          166 SIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             -----------------------------------------C
T ss_pred             cCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence            999999999999999999999999999999999999998854

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.29  E-value=6e-13  Score=117.44  Aligned_cols=164  Identities=12%  Similarity=0.124  Sum_probs=21.4

Q ss_pred             cccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhh
Q 023512           44 SKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (281)
Q Consensus        44 ~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~----~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (281)
                      +..|..+|+++.|+.|+.+|+++|.+++++.+||+++    ++++|+++.+|+-..                        
T Consensus       141 e~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~------------------------  196 (556)
T 4af0_A          141 ENGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ------------------------  196 (556)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             ccCccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc------------------------
Confidence            3446778999999999999999999999999999984    689999999997321                        


Q ss_pred             hhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHH
Q 023512          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  198 (281)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~  198 (281)
                                         ....++.++|+  +++++++++.++.+|.++|.+++...+||+| +++++|+||.+|+.+.
T Consensus       197 -------------------d~~~~V~evMT--~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          197 -------------------DAETPIKSVMT--TEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKN  255 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------------------ccceEhhhhcc--cceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhh
Confidence                               01235889998  6799999999999999999999999999999 9999999999999732


Q ss_pred             HHhcCCCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEE
Q 023512          199 VISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDV  255 (281)
Q Consensus       199 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gv  255 (281)
                      -........+ .-..++-  -..+.-...-.+-.+.+.+.+.+.+.|-..+|.-.++
T Consensus       256 ~~~p~A~k~d-~~grL~V--gAAVgv~~d~~eR~~aLv~AGvD~iviD~ahGhs~~v  309 (556)
T 4af0_A          256 QNYPYASKVP-ESKQLYC--GAAIGTRPGDKDRLKLLAEAGLDVVVLDSSQGNSVYQ  309 (556)
T ss_dssp             --CTTCCBCT-TTCCBCC--EEEECSSHHHHHHHHHHHHTTCCEEEECCSCCCSHHH
T ss_pred             hhCCcchhcc-hhhceee--EEEeccCccHHHHHHHHHhcCCcEEEEeccccccHHH
Confidence            2211110000 0001111  1112222233556677778888877543355553333

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.28  E-value=5.4e-13  Score=120.06  Aligned_cols=163  Identities=15%  Similarity=0.146  Sum_probs=23.8

Q ss_pred             ccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhC
Q 023512           43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWG  122 (281)
Q Consensus        43 v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (281)
                      .++.|.++++++++++++.+++++|.+++++.+||+++++++|+|+.+|++.   .                        
T Consensus        95 ~~~~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~~~lvGivt~~Dl~~---~------------------------  147 (486)
T 2cu0_A           95 AERLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDIAA---R------------------------  147 (486)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             hhhccccCceEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHhcc---C------------------------
Confidence            3567999999999999999999999999999999998899999999999863   0                        


Q ss_pred             CCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHh
Q 023512          123 TSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS  201 (281)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~  201 (281)
                                       ...++.++|.  +++.++++++++.++++.|.+++.+.+||+| +|+++|++|.+|+++ ...
T Consensus       148 -----------------~~~~v~~im~--~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~-~~~  207 (486)
T 2cu0_A          148 -----------------EGKLVKELMT--KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVA-RKK  207 (486)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             -----------------CCCCHHHHcc--CCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHH-hhh
Confidence                             0123667776  5788999999999999999999999999999 899999999999974 332


Q ss_pred             cCCCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEE
Q 023512          202 QNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVD  257 (281)
Q Consensus       202 ~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis  257 (281)
                      ..... ......++..  ..+..++  .+....+.+.+.+.++|-...|...++++
T Consensus       208 ~~~~~-~~~~g~~~v~--~~~~~~~--~~~a~~l~~~gvd~lvvdta~G~~~~~L~  258 (486)
T 2cu0_A          208 YKNAV-RDENGELLVA--AAVSPFD--IKRAIELDKAGVDVIVVDTAHAHNLKAIK  258 (486)
T ss_dssp             CTTCC-BCTTSCBCCE--EEECTTC--HHHHHHHHHTTCSEEEEECSCCCCHHHHH
T ss_pred             ccccc-cccCCceeec--ceechhh--HHHHHHHHHhcCCceEEEecCCcEeehhh
Confidence            11100 0000111111  1223333  56677888899888755444565544443

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.22  E-value=1.1e-12  Score=119.04  Aligned_cols=157  Identities=9%  Similarity=0.090  Sum_probs=85.0

Q ss_pred             cccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhH
Q 023512           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (281)
Q Consensus        42 ~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~----~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~  117 (281)
                      +++++|.++++++++++++.+|+++|.+++++.+||+|+    ++++|+|+..|+.... .                   
T Consensus       109 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~-~-------------------  168 (514)
T 1jcn_A          109 NFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLA-E-------------------  168 (514)
T ss_dssp             TCCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC------------------------
T ss_pred             hhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhh-h-------------------
Confidence            678999999999999999999999999999999999985    7999999999985420 0                   


Q ss_pred             hhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                                          .....++.++|.+..++.++++++++.++++.|.+++...+||+| +|+++|+||.+|++
T Consensus       169 --------------------~~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll  228 (514)
T 1jcn_A          169 --------------------KDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLK  228 (514)
T ss_dssp             --------------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCS
T ss_pred             --------------------ccCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHH
Confidence                                011235778887322899999999999999999999999999999 89999999999997


Q ss_pred             HHHHhcCCCCccccccccccCCC-e--eeeCCCCHHHHHHHhHhCCCCeeeE
Q 023512          197 MRVISQNLPADSTLVEKVMTPNP-E--CATIDTPIVDALHIMHDGKFLHLPV  245 (281)
Q Consensus       197 ~~~~~~~~~~~~~~v~~~~~~~~-~--~v~~~~~l~~~~~~~~~~~~~~l~V  245 (281)
                      +.+....      ...+ +.... +  .+..+....+..+.+.+.+.+.+-+
T Consensus       229 ~~~~~~~------~~~~-~~~rl~vga~vG~~~~~~~~a~~~~~aG~d~v~i  273 (514)
T 1jcn_A          229 KNRDYPL------ASKD-SQKQLLCGAAVGTREDDKYRLDLLTQAGVDVIVL  273 (514)
T ss_dssp             SCCCCTT------CCBC-TTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEE
T ss_pred             HHhhCcc------hhcc-cCCceeeeeEecCchhhHHHHHHHHHcCCCEEEe
Confidence            3221110      1111 11111 1  1222334556666677777776644

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.09  E-value=2.9e-11  Score=78.95  Aligned_cols=53  Identities=25%  Similarity=0.525  Sum_probs=47.7

Q ss_pred             CCCCCccEEEEEcCCCcEEEEEehHHHHHHHHHhcCCCCcccccccccCCCeEe
Q 023512            1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFV   54 (281)
Q Consensus         1 m~~~~~~~~~v~~~~~~~~Gi~t~~d~~~~~~~~~~~~~~~~v~dim~~~~~~v   54 (281)
                      |.+++++++||+| +|+++||+|++|+++++...+.++.+.+++++|+++++++
T Consensus        18 M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A           18 LSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             HHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred             HHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence            6789999999998 5899999999999988888888888999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	281
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	1e-13
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	6e-07
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	2e-10
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	8e-04
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	2e-10
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	6e-10
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	1e-04
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	4e-09
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	5e-09
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	7e-06
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	5e-05
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	9e-09
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	1e-04
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	2e-08
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	2e-05
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	5e-04
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	3e-08
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	9e-06
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	1e-05
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	4e-08
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	0.002
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	5e-08
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	8e-08
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	2e-04
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	0.002
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	0.004
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	2e-07
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	3e-07
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	3e-07
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	8e-04
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	4e-07
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	6e-07
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	2e-06
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	0.001
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	2e-06
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	0.004
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	7e-06
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	6e-05
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	9e-05
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	2e-05
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	0.002
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	2e-05
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	2e-05
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	3e-04
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	5e-04

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 64.4 bits (156), Expect = 1e-13
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
             VV I P D+V  A +KM    + + +V  + K  GILT +D   +    + P   T V
Sbjct: 13  HTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQV 72

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267
           +++MT       ++    D + ++ + +  HLPV+D DG V+ ++ +  +   A++
Sbjct: 73  KEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS 127

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 45.5 bits (107), Expect = 6e-07
 Identities = 32/98 (32%), Positives = 58/98 (59%), Gaps = 1/98 (1%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAA  + ALL+     L+ GILT++D + +    +  +++T V ++MTR   +V  +   
Sbjct: 31  MAADNIGALLVMKDEKLV-GILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTN 89

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIA 98
            + +  + + + RHLPV+++G+VI LL I   + DAI+
Sbjct: 90  EDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAIS 127

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 20/128 (15%), Positives = 42/128 (32%), Gaps = 7/128 (5%)

Query: 148 IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE-NKPRGILTSKDILMRVISQNLPA 206
           I   + +  +  T  V +A    ++ R+S+  V  E  +   I +  D++     +    
Sbjct: 16  IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNN 75

Query: 207 DSTL------VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH 260
                                  +   +   ++ + + +   L VVD    V  +V +  
Sbjct: 76  LDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSD 135

Query: 261 ITHAAVAT 268
           I  A V T
Sbjct: 136 ILQALVLT 143

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.7 bits (84), Expect = 8e-04
 Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 10/103 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEET------PVSKVMTRNPTFV 54
               RV AL + D    +  I +  D+      +  N  +                    
Sbjct: 38  FVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKC 97

Query: 55  LSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCL 93
                    + ++V+ +   L VV E+  V  ++   DI + L
Sbjct: 98  YLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQAL 140

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 54.8 bits (131), Expect = 2e-10
 Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 2/107 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGIL--TSKDILMRVISQNLPADST 209
           +  V +SP D V    +           +T   +    L        +  + +       
Sbjct: 4   TDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFL 63

Query: 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                   +   A     + +A  I+   K   LP+V+ + ++V ++
Sbjct: 64  EEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAII 110

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 54.7 bits (130), Expect = 6e-10
 Identities = 19/155 (12%), Positives = 40/155 (25%), Gaps = 11/155 (7%)

Query: 42  PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
            V  +M R+ T + S +   + L  + Q K +  P V+               + +    
Sbjct: 12  QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-----------PDTNTLLGSI 60

Query: 102 RAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTD 161
              E    +   +    +     +          +                    +    
Sbjct: 61  DRTEVEGLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGT 120

Query: 162 TVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
           ++         L L  A VT   K  G++   +I 
Sbjct: 121 SLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQ 155

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 30  RVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL-- 87
           R   RE N+     +  + ++P  ++  T   +              V   G+++ ++  
Sbjct: 92  RWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVAL 151

Query: 88  -DIAK 91
            +I  
Sbjct: 152 AEIQA 156

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 52.2 bits (124), Expect = 4e-09
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 2/131 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE-NKPRGILTSKDILMRVISQNLPADSTL 210
           S   T++   TV  A K M E  L   VV  +     G+L+ + I+ R I +N   D   
Sbjct: 11  SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVP 70

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATEI 270
           +  VM         D  + D    + +       VVD  G VV +V +  ++   ++   
Sbjct: 71  IRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSR-YLSRAS 129

Query: 271 LLDQIMRQQAQ 281
           + D ++  + +
Sbjct: 130 ITDILLSHRTK 140

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 51.3 bits (122), Expect = 5e-09
 Identities = 25/114 (21%), Positives = 57/114 (50%), Gaps = 1/114 (0%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
            K++ + P+ +V  A++ M+E  + S VV  ++       +K  ++R +          V
Sbjct: 13  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPV 72

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265
           E++MT N   A ++TP+ + L  M + +  H+ + + +G +V +  +  +  A+
Sbjct: 73  ERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEAS 125

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.5 bits (99), Expect = 7e-06
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    V +L++ + +  + G  T  DI  RVI   L   + PV ++MTRN      +T  
Sbjct: 31  MMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLP-YDIPVERIMTRNLITANVNTPL 89

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERA 103
            E L+KM + + +H+ + E G+++ +  ++  L  +  R+E A
Sbjct: 90  GEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRRLETA 132

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.2 bits (93), Expect = 5e-05
 Identities = 23/157 (14%), Positives = 43/157 (27%), Gaps = 38/157 (24%)

Query: 40  ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIAR 99
           + P+   MT+    V   T   EA + M++     L V+                     
Sbjct: 4   KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIN-------------------- 43

Query: 100 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 159
                             +          +  I  +        +         ++T + 
Sbjct: 44  ------------------DDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLITANV 85

Query: 160 TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
              +    +KM E R+   ++  E K  GI T  D+L
Sbjct: 86  NTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLL 122

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.4 bits (122), Expect = 9e-09
 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 17/127 (13%)

Query: 147 IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN--KPRGILTSKDILMRVISQNL 204
           +IP  SK+V    +  V  A   ++   + +A +         G+LT  D +  +     
Sbjct: 18  LIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYK 77

Query: 205 PADSTL--------------VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD- 249
            A   +                +       C + +  + DA+  +   K   LPV+D + 
Sbjct: 78  SALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES 137

Query: 250 GDVVDVV 256
           G+ + ++
Sbjct: 138 GNTLYIL 144

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 19/109 (17%)

Query: 8   ALLLTDSNALLCGILTDKDIATRVIARELNLEET--------------PVSKVMTRNPTF 53
           A L         G+LT  D    +     +                     +   +    
Sbjct: 49  APLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVC 108

Query: 54  VLSDTLAVEALQKMVQGKFRHLPVV--ENGEVIALL---DIAKCLYDAI 97
           +  +    +A+  +++ K   LPV+  E+G  + +L    I K L   I
Sbjct: 109 ISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFI 157

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (118), Expect = 2e-08
 Identities = 15/123 (12%), Positives = 41/123 (33%), Gaps = 7/123 (5%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLP---- 205
           +  + +   T  V+   + + + R+SS  ++        +  + D+L  +          
Sbjct: 16  QDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL 75

Query: 206 --ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263
              ++ +            T +  +   +  +   +     VVD  G +V V+ +  I  
Sbjct: 76  SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILK 135

Query: 264 AAV 266
             +
Sbjct: 136 YIL 138

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 9/54 (16%), Positives = 27/54 (50%)

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267
           +   N +   + TP++D + ++  G+   +P++D +G +++V +   +      
Sbjct: 14  ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG 67

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (85), Expect = 5e-04
 Identities = 21/155 (13%), Positives = 46/155 (29%), Gaps = 32/155 (20%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 102
           ++ +   N       T  ++ +Q + QG+   +P+++    +  +  A  +   I     
Sbjct: 11  LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGG-- 68

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
                                        I          +L     +   V T +  D 
Sbjct: 69  -----------------------------IYNDLSLSVGEALMRRSDDFEGVYTCTKNDK 99

Query: 163 VLMATKKMLELRLSSAVVTVEN-KPRGILTSKDIL 196
           +      + + R+    V  +  +  G+LT  DIL
Sbjct: 100 LSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 134

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 49.6 bits (117), Expect = 3e-08
 Identities = 24/158 (15%), Positives = 46/158 (29%), Gaps = 9/158 (5%)

Query: 40  ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIAR 99
              +     R  + V   T    AL+ ++      LPVV+             +      
Sbjct: 3   GVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVD--------SEGNLVGIVDET 54

Query: 100 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 159
                 +   I  + E         I   +  +   +  +  P+          V+  +P
Sbjct: 55  DLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATP 114

Query: 160 TDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL 196
             TV     KM +  +    V+  E    G++   D+L
Sbjct: 115 HMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 152

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.7 bits (99), Expect = 9e-06
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265
           +E             TP+  AL  +     + LPVVD +G++V +VD   +   +
Sbjct: 6   IEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDS 60

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 22/146 (15%), Positives = 43/146 (29%), Gaps = 30/146 (20%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVE-NKPRGILTSKDILMRVISQNLPADST 209
           +  V  +     +  A K +L     +  V        GI+   D+L       +   + 
Sbjct: 11  QRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTE 70

Query: 210 L-----------------------------VEKVMTPNPECATIDTPIVDALHIMHDGKF 240
           L                             V ++MT +   AT    + +    M     
Sbjct: 71  LAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSI 130

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAV 266
             LPV+  +GD++ ++    +    V
Sbjct: 131 EQLPVIRGEGDLIGLIRDFDLLKVLV 156

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 48.7 bits (115), Expect = 4e-08
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 2/114 (1%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
           K++V++++    +    K M E  + S +V   NKP GI+T +DI+  +      +  T 
Sbjct: 11  KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGK--SLETK 68

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
            E+ MT +      D+PI  AL +M      HLPVVD  G++  ++ +  IT A
Sbjct: 69  AEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRA 122

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 9/43 (20%), Positives = 16/43 (37%)

Query: 38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN 80
          +EE  V + M      V  D    +  + M +     + VV+ 
Sbjct: 1  MEEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG 43

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 48.7 bits (115), Expect = 5e-08
 Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 14/121 (11%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVE---NKPRGILTSKDILMRVISQNLPADSTL 210
              ++P   V  A + M   R+S   +       K  GI+T++D+           ++ +
Sbjct: 7   PFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDY-----NAPI 61

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIHITHA 264
            E + + +   A + T +  A  I+H+ +   LP+VD  G +       D+  VI   HA
Sbjct: 62  SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHA 121

Query: 265 A 265
           A
Sbjct: 122 A 122

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 48.0 bits (113), Expect = 8e-08
 Identities = 18/106 (16%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 210
           + V  +   +T+  A + M E  + +  +  ++ +  G+LT +DI+++ ++  L  ++  
Sbjct: 9   AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 68

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
             ++   +      +  I + L++M + +   +PV+  +  +V +V
Sbjct: 69  AGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIV 113

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    + AL +   +  L G+LTD+DI  + +A  L+       ++   +  +V ++   
Sbjct: 27  MREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDANASI 86

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALL---DIAKCL 93
            E L  M + + R +PV+    ++ ++   DIA+ L
Sbjct: 87  QEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHL 122

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 10/68 (14%), Positives = 20/68 (29%)

Query: 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT 268
           T    +M     C      +  A   M +     LP+   D  +  ++    I    +A 
Sbjct: 1   TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAA 60

Query: 269 EILLDQIM 276
            +  +   
Sbjct: 61  GLDPNTAT 68

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 34.5 bits (78), Expect = 0.004
 Identities = 20/156 (12%), Positives = 42/156 (26%), Gaps = 37/156 (23%)

Query: 41  TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARM 100
           T    +M    T V        A Q M +     LP+  +                    
Sbjct: 1   TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD-------------------- 40

Query: 101 ERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPT 160
                            +      ++  +  I+ L   +   + +     +  +  +   
Sbjct: 41  -----------------DDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDAN 83

Query: 161 DTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
            ++      M E ++    V  E++  GI+T  DI 
Sbjct: 84  ASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIA 119

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 47.1 bits (111), Expect = 2e-07
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 16/129 (12%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLS------SAVVTVENKPRGILTSKDILMRVISQNLP 205
            + V +    TV    + +              VV  + + +G+L+ +D+++        
Sbjct: 9   PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD------ 62

Query: 206 ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHIT 262
              T V ++M P       DT   +   +M D  F  LPVVD +G +V +V   DV+ + 
Sbjct: 63  -PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL 121

Query: 263 HAAVATEIL 271
            A    +I 
Sbjct: 122 EAEATEDIH 130

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 46.5 bits (109), Expect = 3e-07
 Identities = 20/114 (17%), Positives = 45/114 (39%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
           K   V++  T T+     ++ + R+  AV+T  + P+  +        + +     D   
Sbjct: 8   KRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDG 67

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
               +  +P       P+  A   M      H+ VV+++G++V V+ +  +   
Sbjct: 68  PAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE 121

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 46.0 bits (108), Expect = 3e-07
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 2/115 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
           + V TI  T ++    +  +E    S+VV  E    GI+T+ D+ +  I++        V
Sbjct: 8   TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDV-LEAIAEGDDLAEVKV 66

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266
            +VM  +    +    I +A   M       L V + D +++ V+    I  A +
Sbjct: 67  WEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAKM 120

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 36.4 bits (83), Expect = 8e-04
 Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 39/154 (25%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 102
           V  VM  +   +       + L+  V+       VV+ G  +                  
Sbjct: 2   VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRV------------------ 43

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
                                 I      +E + E      +      +  +VTISP  T
Sbjct: 44  ---------------------GIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVTISPRAT 82

Query: 163 VLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
           +  A +KM++  +   +V  +++  G++++ DIL
Sbjct: 83  IKEAAEKMVKNVVWRLLVEEDDEIIGVISATDIL 116

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 45.9 bits (108), Expect = 4e-07
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 13/118 (11%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVIS---QNLPADS 208
           ++ V+I    TV  A   +      +  +        ++  ++ L+ VIS     +  D 
Sbjct: 9   TEFVSIVANQTVRSAMYVLKNQADMAETIYY----VYVVDQENHLVGVISLRDLIVNDDD 64

Query: 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIH 260
           TL+  ++        +     D    + D  FL +PV D D  ++      D++DVI 
Sbjct: 65  TLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID 122

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 46.5 bits (109), Expect = 6e-07
 Identities = 15/152 (9%), Positives = 42/152 (27%), Gaps = 20/152 (13%)

Query: 132 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENK------ 185
           ++ ++  +   +   ++P   +++    T  V  +   +    + SA +           
Sbjct: 10  LKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGL 69

Query: 186 --------------PRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231
                                    +         +       + P          ++DA
Sbjct: 70  LTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDA 129

Query: 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263
              M   +   +P++D DG+    + V  +T 
Sbjct: 130 CLAMSKSRARRIPLIDVDGETGSEMIVSVLTQ 161

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 16/128 (12%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR-GILTSKDILMRVISQNL------ 204
            K   +     +     ++LE  ++  V    +    G++    +L              
Sbjct: 12  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKE 71

Query: 205 --------PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                      +    ++M  +P    +DTP+ +AL +M D     +PVVD  G++V  +
Sbjct: 72  ELIRSSMKRLIAKNASEIML-DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDL 130

Query: 257 DVIHITHA 264
           + + I  A
Sbjct: 131 NSLEILLA 138

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 27/155 (17%), Positives = 45/155 (29%), Gaps = 25/155 (16%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 102
           V K+++  PT V  DT   E + ++++        V     +  +     L         
Sbjct: 6   VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKV------ 59

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
                              G    G     E +R  M R             V +     
Sbjct: 60  ------------------SGFHFFGFIPKEELIRSSMKRLIAKNASEIMLDPVYVHMDTP 101

Query: 163 VLMATKKMLELRLSSAVVTVEN-KPRGILTSKDIL 196
           +  A K M++  +    V  E  +  G L S +IL
Sbjct: 102 LEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 136

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 8/122 (6%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN--------KPRGILTSKDILMRVISQN 203
                +S  D +  A KK+ E  +   +V  E              + S           
Sbjct: 9   KNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQGDL 68

Query: 204 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263
               +T +   MTPNP      +    A++IM    F  LPVVD +   V +V       
Sbjct: 69  YHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLL 128

Query: 264 AA 265
             
Sbjct: 129 LY 130

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 7/41 (17%), Positives = 18/41 (43%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD 251
           +E +M  NP   + +  +  A   +++G    + V +   +
Sbjct: 3   IETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIE 43

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 42.6 bits (99), Expect = 7e-06
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 9/123 (7%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENK-PRGILTSKDILMRVISQ-------N 203
               T+  T T+  A   M  L +    +   NK   GI++ +D+L    S        +
Sbjct: 10  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGD 69

Query: 204 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263
             A  T + +VM  +         + ++   M   K   LPVV     +V ++       
Sbjct: 70  SLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVT 128

Query: 264 AAV 266
            A+
Sbjct: 129 IAI 131

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 39.9 bits (92), Expect = 6e-05
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRV-------IARELNLEETPVSKVMTRNPTF 53
           M A  +  + + D+N  L GI++ +D+              +    ETP+ +VM  + T 
Sbjct: 28  MEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVMHTDVTS 87

Query: 54  VLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIARME 101
           V       E+   M + K   LPVV    ++ ++   D      + +   E
Sbjct: 88  VAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINLLELQE 138

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 39.5 bits (91), Expect = 9e-05
 Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 30/160 (18%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 102
           V  +MTR+P  +L      +A   M     RH+P+V+  + +  +   + L  A     +
Sbjct: 4   VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQ 63

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
            + +G ++A      E                                 + V +++P   
Sbjct: 64  RSAQGDSLAFETPLFEVMH------------------------------TDVTSVAPQAG 93

Query: 163 VLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ 202
           +  +   M + ++    V  ++   GI+T  D +   I+ 
Sbjct: 94  LKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINL 133

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 17/138 (12%), Positives = 41/138 (29%), Gaps = 7/138 (5%)

Query: 148 IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQN--- 203
           I   S + T S    V    K + E  +S+  +         +  S D++  +   +   
Sbjct: 8   IGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSN 67

Query: 204 ---LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH 260
                 ++ L                 +      +   +   L VVD +  +  ++ +  
Sbjct: 68  LDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLAD 127

Query: 261 ITHAAVATEILLDQIMRQ 278
           I +  +  +     +  Q
Sbjct: 128 ILNYIIYDKTTTPGVPEQ 145

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 10/124 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMT------RNPTFV 54
           +A + + A+ + +S   L  +    D+   +   + +  +  V + +             
Sbjct: 30  LAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTC 89

Query: 55  LSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKGKAI 110
            +          +   +   L VV EN ++  +L   DI   +           E+    
Sbjct: 90  RATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTTTPGVPEQTDNF 149

Query: 111 AAAV 114
            +AV
Sbjct: 150 ESAV 153

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 41.5 bits (96), Expect = 2e-05
 Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 8/134 (5%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPAD---- 207
           +KV TI     +  A K ML        V  ++     + +    ++ +++ +       
Sbjct: 10  TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDY 69

Query: 208 --STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265
               +V+ VM  N         +  A   M   +   L ++++D  +  ++    +  A 
Sbjct: 70  FYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIAL 129

Query: 266 VATEILLDQIMRQQ 279
               IL+ +  +++
Sbjct: 130 H--HILVMEKFKEK 141

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 6/105 (5%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
              VTI+   T   A +   + ++ S  V  +      + S   ++    +   A     
Sbjct: 9   QNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQLAM---- 64

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
             ++  +      +  +  A  +M +  +  + VVD  G  V ++
Sbjct: 65  --LVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGIL 107

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 6/114 (5%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
               +  + TV     +M + + +  +V         + +K+ L+ +   +         
Sbjct: 10  DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSV------F 63

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266
             ++        +  I  AL +  + +  +LPVVD +  +   V +     A +
Sbjct: 64  NKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALI 117

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 1/70 (1%)

Query: 33  ARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKC 92
                     +  ++  +P  V   T     +    +   R   V  NG ++ ++     
Sbjct: 92  LPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDV 151

Query: 93  LYDAIARMER 102
           L   IA+M  
Sbjct: 152 L-KHIAQMAN 160

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	281
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.89
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.88
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.87
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.87
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.87
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.87
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.86
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.85
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.85
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.85
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.84
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.84
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.84
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.84
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.83
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.83
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.83
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.83
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.83
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.83
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.82
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.82
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.82
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.82
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.81
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.81
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.8
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.8
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.8
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.8
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.79
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.79
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.78
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.78
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.78
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.78
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.78
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.78
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.76
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.76
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.76
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.76
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.75
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.75
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.75
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.74
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.73
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.72
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.7
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.7
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.69
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.68

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.89  E-value=1.5e-22  Score=151.18  Aligned_cols=124  Identities=24%  Similarity=0.286  Sum_probs=115.1

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCee
Q 023512          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  221 (281)
Q Consensus       143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~  221 (281)
                      ++.++|.  +++.++++++|+.+|++.|.+++.+++||++ +|+++|++|.+|+++++..........+++++|++++++
T Consensus         4 ~v~dim~--~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~~~~   81 (142)
T d1pvma4           4 RVEKIMN--SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPK   81 (142)
T ss_dssp             BGGGTSB--TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSCCE
T ss_pred             EHHHhCC--CCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhccccccccccccccccccc
Confidence            5788998  7899999999999999999999999999999 789999999999987777766666677899999999999


Q ss_pred             eeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       222 v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      +.+++++.+|++.|.+++++++||+|++|+++|+||..||+++..+.
T Consensus        82 v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~~~  128 (142)
T d1pvma4          82 VKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRA  128 (142)
T ss_dssp             EETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCHH
T ss_pred             ccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999987654

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.88  E-value=6e-22  Score=145.02  Aligned_cols=124  Identities=27%  Similarity=0.383  Sum_probs=111.3

Q ss_pred             cCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCC
Q 023512          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (281)
Q Consensus       140 ~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~  219 (281)
                      ....+.++|+  +++.++++++++.+|++.|.+++++++||+++|+++|++|..|+++.+. ..... ..++.++|.+++
T Consensus         2 ~~~~V~d~m~--~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~~~~Givt~~dl~~~~~-~~~~~-~~~v~~~~~~~~   77 (127)
T d2ef7a1           2 EEEIVKEYMK--TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIG-KGKSL-ETKAEEFMTASL   77 (127)
T ss_dssp             CCCBGGGTSB--CSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHH-TTCCT-TCBGGGTSEECC
T ss_pred             CccCHHHhCC--CCCeEECCcCcHHHHHHHHHHcCCceEEeecccchhhhcchhHHHHHHH-hhccc-cchhhhhhhhhc
Confidence            3457899998  7899999999999999999999999999999999999999999985444 33332 458999999999


Q ss_pred             eeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      .++++++++.++++.|.+++++++||+|++|+++|+||..||+++...
T Consensus        78 ~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          78 ITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             CCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999998653

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.87  E-value=9.4e-23  Score=148.51  Aligned_cols=120  Identities=17%  Similarity=0.329  Sum_probs=110.1

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCee
Q 023512          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  221 (281)
Q Consensus       143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~  221 (281)
                      +++++|+  +++.++.+++++.+|++.|.+++++++||++ +|+++|++|.+|++++.+..........++++|.+++.+
T Consensus         2 t~~diM~--~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~~~~   79 (123)
T d1y5ha3           2 TARDIMN--AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYY   79 (123)
T ss_dssp             CHHHHSE--ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCCC
T ss_pred             CHHHhcC--CCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCCcccceEEEEeecccee
Confidence            5678887  7899999999999999999999999999998 889999999999987777776666666889999999999


Q ss_pred             eeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhh
Q 023512          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (281)
Q Consensus       222 v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~  265 (281)
                      +.+++++.+|++.|.+++++++||+| +|+++|+||.+||+++.
T Consensus        80 v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          80 VDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARHL  122 (123)
T ss_dssp             EETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHTC
T ss_pred             eeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhhC
Confidence            99999999999999999999999998 68999999999999874

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.87  E-value=3e-22  Score=146.61  Aligned_cols=122  Identities=26%  Similarity=0.453  Sum_probs=109.1

Q ss_pred             ccccccC-CCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeee
Q 023512          144 LSTIIPE-KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA  222 (281)
Q Consensus       144 v~~~m~~-~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v  222 (281)
                      +.++|.. ..+++++++++|+.+|++.|.+++++++||+++|+++|++|.+|+++++..........+++++|++++.++
T Consensus         4 V~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~~~~~v   83 (127)
T d2rc3a1           4 VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAYV   83 (127)
T ss_dssp             HHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCCCB
T ss_pred             HHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEccchhhhhhhhcccccceeEeeeccceeEEe
Confidence            4455542 147899999999999999999999999999999999999999999877766666666778999999999999


Q ss_pred             eCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512          223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (281)
Q Consensus       223 ~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~  266 (281)
                      .+++++.+|++.|.+++++++||+| +|+++|+||.+|++++..
T Consensus        84 ~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          84 DLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             CTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHHh
Confidence            9999999999999999999999998 799999999999999853

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.87  E-value=3.8e-22  Score=144.57  Aligned_cols=118  Identities=22%  Similarity=0.233  Sum_probs=107.2

Q ss_pred             ccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeee
Q 023512          144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECAT  223 (281)
Q Consensus       144 v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~  223 (281)
                      +.++|+  +++.++++++|+.+|++.|.+++++++||.++|+++|++|.+|+++.+. ........++.++|++++.+++
T Consensus         2 V~diM~--~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~~~~Gvit~~Di~~~l~-~~~~~~~~~v~~~m~~~~~~v~   78 (120)
T d1pbja3           2 VEDVMV--TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIA-EGDDLAEVKVWEVMERDLVTIS   78 (120)
T ss_dssp             HHHHCB--CSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHH-HTCCTTTSBHHHHCBCGGGEEC
T ss_pred             hHHhCC--CCCeEECCcCcHHHHHHHHHHcCceEEEEEeCCcEEEEEEeeecccccc-ccccccceeEeeeccccccccc
Confidence            567888  7899999999999999999999999999999999999999999985444 4445556789999999999999


Q ss_pred             CCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhh
Q 023512          224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (281)
Q Consensus       224 ~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~  265 (281)
                      +++++.+|++.|.+++.+++||++ +|+++|++|.+|+++|.
T Consensus        79 ~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          79 PRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAK  119 (120)
T ss_dssp             TTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             chhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhcC
Confidence            999999999999999999999986 79999999999999984

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.87  E-value=1.6e-21  Score=143.65  Aligned_cols=123  Identities=25%  Similarity=0.438  Sum_probs=111.1

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCe
Q 023512          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  220 (281)
Q Consensus       142 ~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~  220 (281)
                      .+++++|+  +++.++++++|+.+|++.|.+++++++||+| +|+++|++|..|+++.++.... ....+++++|.+++.
T Consensus         5 ~pV~~im~--~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~-~~~~~v~~im~~~~~   81 (132)
T d2yzia1           5 APIKVYMT--KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL-PYDIPVERIMTRNLI   81 (132)
T ss_dssp             SBGGGTCB--CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC-CTTSBGGGTCBCSCC
T ss_pred             CcHHHHcC--CCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccC-ccceeEeeccccccc
Confidence            46899998  8899999999999999999999999999999 8899999999999865555433 345689999999999


Q ss_pred             eeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      ++.+++++.++++.|.+++++++||++ +|+++|+||.+|++++....
T Consensus        82 ~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~~  128 (132)
T d2yzia1          82 TANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRRR  128 (132)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHCC
T ss_pred             ccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence            999999999999999999999999875 79999999999999997664

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.86  E-value=2.8e-21  Score=143.64  Aligned_cols=129  Identities=19%  Similarity=0.310  Sum_probs=107.2

Q ss_pred             ccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhh
Q 023512           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (281)
Q Consensus        41 ~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (281)
                      .+++|+|+++++++.+++|+.+|++.|.+++++++||+|+ |+++|+++..|++..........                
T Consensus         2 i~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~----------------   65 (139)
T d2o16a3           2 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRS----------------   65 (139)
T ss_dssp             CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC------------------
T ss_pred             EEHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhh----------------
Confidence            4799999999999999999999999999999999999985 99999999999987643321100                


Q ss_pred             hhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHH
Q 023512          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRV  199 (281)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~  199 (281)
                                   ..........++.++|.  +++.++++++++.++++.|.+++.+++||+|+|+++|+||..|+++.+
T Consensus        66 -------------~~~~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~~~  130 (139)
T d2o16a3          66 -------------AQGDSLAFETPLFEVMH--TDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIA  130 (139)
T ss_dssp             --------------------CCCBHHHHSC--SCEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHHH
T ss_pred             -------------hcccccccccchhHhhc--cccccccccchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHHHH
Confidence                         00111234556888897  789999999999999999999999999999999999999999999655


Q ss_pred             H
Q 023512          200 I  200 (281)
Q Consensus       200 ~  200 (281)
                      .
T Consensus       131 ~  131 (139)
T d2o16a3         131 I  131 (139)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.85  E-value=3e-21  Score=143.47  Aligned_cols=125  Identities=19%  Similarity=0.166  Sum_probs=110.0

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCC-------CCcccccccc
Q 023512          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-------PADSTLVEKV  214 (281)
Q Consensus       143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~-------~~~~~~v~~~  214 (281)
                      +++++|+  +++.++++++|+.+|++.|.+++++++||+| +|+++|++|.+|+++.......       .....+++++
T Consensus         3 ~v~diM~--~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~i   80 (139)
T d2o16a3           3 KVEDMMT--RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEV   80 (139)
T ss_dssp             BGGGTSE--ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHHH
T ss_pred             EHHHhCc--CCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhhhcccccccccchhHh
Confidence            5789998  7899999999999999999999999999999 8999999999999854433211       1234589999


Q ss_pred             ccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhchHH
Q 023512          215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATEI  270 (281)
Q Consensus       215 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~~~  270 (281)
                      |+++++++++++++.+|++.|.+++.+++||+| +|+++|+||.+||+++..+.+.
T Consensus        81 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~~~~~  135 (139)
T d2o16a3          81 MHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAINLLE  135 (139)
T ss_dssp             SCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHHHHHH
T ss_pred             hccccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHHHHHh
Confidence            999999999999999999999999999999998 6999999999999999887544

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.85  E-value=9.1e-22  Score=149.29  Aligned_cols=150  Identities=19%  Similarity=0.234  Sum_probs=106.3

Q ss_pred             CcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhH
Q 023512           39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (281)
Q Consensus        39 ~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~  117 (281)
                      .+.+|+++|+++++++++++++.+|+++|.+++++++||+|+ |+++|++|..|++.............       ....
T Consensus         2 ~~~~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~-------~~~~   74 (156)
T d2yzqa1           2 KGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTE-------LAAS   74 (156)
T ss_dssp             GGCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC-----------------
T ss_pred             CCCCHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccc-------cccc
Confidence            578999999999999999999999999999999999999985 99999999999864321110000000       0000


Q ss_pred             hhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                      .........................++.++|+  +++.++.+++++.++++.|.+++++++||+| +|+++|++|.+|++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~--~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil  152 (156)
T d2yzqa1          75 SEEEWILESHPTLLFEKFELQLPNKPVAEIMT--RDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL  152 (156)
T ss_dssp             ----------------------CCCBGGGTCB--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHG
T ss_pred             hhhhhhhhhhhhhhHHHhhhcccCCEeehhcc--cCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHH
Confidence            00000000000111122233456678899998  7899999999999999999999999999999 89999999999998


Q ss_pred             H
Q 023512          197 M  197 (281)
Q Consensus       197 ~  197 (281)
                      +
T Consensus       153 ~  153 (156)
T d2yzqa1         153 K  153 (156)
T ss_dssp             G
T ss_pred             H
Confidence            4

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=1.9e-21  Score=143.36  Aligned_cols=125  Identities=13%  Similarity=0.159  Sum_probs=108.8

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCC----CCcccccccccc
Q 023512          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL----PADSTLVEKVMT  216 (281)
Q Consensus       142 ~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~----~~~~~~v~~~~~  216 (281)
                      .++.++|.|.+++.++.+++|+.+|++.|.+++++++||+| +|+++|++|.+|+++.+.....    .....++.++|.
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~~m~   81 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVML   81 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHSB
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhcccccccccccccccccccc
Confidence            35788888778999999999999999999999999999998 8999999999999865543321    122457889999


Q ss_pred             CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      ++++++.+++++.++++.|.+++  .+||+|++|+++|+||.+|++++..++
T Consensus        82 ~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~~~  131 (132)
T d1yava3          82 TDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             CSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHHhh
Confidence            99999999999999999998765  599999999999999999999997654

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.84  E-value=1.3e-20  Score=137.87  Aligned_cols=121  Identities=15%  Similarity=0.199  Sum_probs=106.1

Q ss_pred             CcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHh
Q 023512           39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (281)
Q Consensus        39 ~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (281)
                      .+..|+++|+++++++++++++.+|+++|.+++++.+||+++++++|+++..|+++....                    
T Consensus         2 ~~~~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~~~~Givt~~dl~~~~~~--------------------   61 (127)
T d2ef7a1           2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGK--------------------   61 (127)
T ss_dssp             CCCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHT--------------------
T ss_pred             CccCHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeecccchhhhcchhHHHHHHHh--------------------
Confidence            467899999999999999999999999999999999999999999999999999764211                    


Q ss_pred             hhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHH
Q 023512          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (281)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~  197 (281)
                                        ......++.++|.  +++.++++++++.++++.|.+++.+++||++ +|+++|+||..|+++
T Consensus        62 ------------------~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~  121 (127)
T d2ef7a1          62 ------------------GKSLETKAEEFMT--ASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITR  121 (127)
T ss_dssp             ------------------TCCTTCBGGGTSE--ECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred             ------------------hccccchhhhhhh--hhccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHH
Confidence                              0112345778887  7899999999999999999999999999998 899999999999985


Q ss_pred             HH
Q 023512          198 RV  199 (281)
Q Consensus       198 ~~  199 (281)
                      .+
T Consensus       122 ~i  123 (127)
T d2ef7a1         122 AI  123 (127)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.84  E-value=8.6e-21  Score=137.33  Aligned_cols=119  Identities=19%  Similarity=0.239  Sum_probs=104.4

Q ss_pred             cccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhh
Q 023512           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHW  121 (281)
Q Consensus        42 ~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (281)
                      +|+|+|+++++++++++|+.+|++.|.+++++.+||.++|+++|+++..|+++.....                      
T Consensus         1 kV~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~~~~Gvit~~Di~~~l~~~----------------------   58 (120)
T d1pbja3           1 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEG----------------------   58 (120)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHT----------------------
T ss_pred             ChHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeCCcEEEEEEeeecccccccc----------------------
Confidence            4789999999999999999999999999999999999999999999999998753210                      


Q ss_pred             CCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHH
Q 023512          122 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRV  199 (281)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~  199 (281)
                                     ......++.++|.  .++.++++++++.+|++.|.+++.+++||+++|+++|++|..|++++.
T Consensus        59 ---------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          59 ---------------DDLAEVKVWEVME--RDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAK  119 (120)
T ss_dssp             ---------------CCTTTSBHHHHCB--CGGGEECTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred             ---------------ccccceeEeeecc--cccccccchhHHHHHHHHHHHcCCeEEEEEECCEEEEEEEHHHHHhcC
Confidence                           0122345778887  789999999999999999999999999999999999999999998543

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.84  E-value=1.3e-21  Score=142.43  Aligned_cols=119  Identities=18%  Similarity=0.201  Sum_probs=101.5

Q ss_pred             ccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhh
Q 023512           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (281)
Q Consensus        41 ~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (281)
                      ++++|+|+++++++++++++.+|+++|.+++++.+||+++ |+++|+++..|++......                    
T Consensus         1 tt~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~--------------------   60 (123)
T d1y5ha3           1 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAA--------------------   60 (123)
T ss_dssp             CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGG--------------------
T ss_pred             CCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhc--------------------
Confidence            4789999999999999999999999999999999999985 8999999999987542110                    


Q ss_pred             hhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHH
Q 023512          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILM  197 (281)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~  197 (281)
                        +.              ......+.++|.  +++.++++++++.++++.|.+++++++||+++|+++|+||..|+++
T Consensus        61 --~~--------------~~~~~~v~~im~--~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~  120 (123)
T d1y5ha3          61 --GL--------------DPNTATAGELAR--DSIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIAR  120 (123)
T ss_dssp             --TC--------------CTTTSBHHHHHT--TCCCCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             --CC--------------CcccceEEEEee--ccceeeeecchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHh
Confidence              00              011224566776  7889999999999999999999999999999999999999999984

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=1.8e-20  Score=137.98  Aligned_cols=123  Identities=21%  Similarity=0.268  Sum_probs=107.0

Q ss_pred             cccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHh
Q 023512           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (281)
Q Consensus        40 ~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (281)
                      +.||+++|+++++++++++|+.+|++.|.+++++.+||+|+ |+++|+++..|+++.....                   
T Consensus         4 ~~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~-------------------   64 (132)
T d2yzia1           4 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVP-------------------   64 (132)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT-------------------
T ss_pred             CCcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhc-------------------
Confidence            56899999999999999999999999999999999999986 8999999999997642110                   


Q ss_pred             hhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHH
Q 023512          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  198 (281)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~  198 (281)
                                        ......++.++|.  +++.++++++++.++++.|.+++.+++||.++|+++|+||..|+++.
T Consensus        65 ------------------~~~~~~~v~~im~--~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~~~~~vGivt~~Dil~a  124 (132)
T d2yzia1          65 ------------------GLPYDIPVERIMT--RNLITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEA  124 (132)
T ss_dssp             ------------------CCCTTSBGGGTCB--CSCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             ------------------cCccceeEeeccc--ccccccCcchHHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHH
Confidence                              0112346888997  78999999999999999999999999999999999999999999965


Q ss_pred             HHh
Q 023512          199 VIS  201 (281)
Q Consensus       199 ~~~  201 (281)
                      +..
T Consensus       125 ~~~  127 (132)
T d2yzia1         125 SRR  127 (132)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            543

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.83  E-value=1.9e-21  Score=141.18  Aligned_cols=116  Identities=23%  Similarity=0.278  Sum_probs=87.8

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCee
Q 023512          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  221 (281)
Q Consensus       143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~  221 (281)
                      +++++|.  ++++++++++++.+|++.|.+++++++||+| +|+++|+||.+|++..       ....++.++|.+++++
T Consensus         2 ~v~diM~--~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~-------~~~~~~~~~~~~~~~~   72 (122)
T d2yzqa2           2 RVKTIMT--QNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVN-------PDEEQLAMLVKRDVPV   72 (122)
T ss_dssp             BHHHHSE--ESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-----------------CCCBSCCCE
T ss_pred             CcccccC--CCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhh-------hcccchhhccccceee
Confidence            3567787  6799999999999999999999999999999 8999999999999732       1234788999999999


Q ss_pred             eeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       222 v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      +++++++.++++.|.+++.+++||+|++|+++|+||.+||++++..
T Consensus        73 v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          73 VKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             EETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT
T ss_pred             cchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999987654

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.83  E-value=2.7e-20  Score=134.88  Aligned_cols=116  Identities=17%  Similarity=0.200  Sum_probs=105.6

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCee
Q 023512          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  221 (281)
Q Consensus       143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~  221 (281)
                      ++.++|.  ++++++++++|+.+|++.|.+++++++||++ +|+++|++|..|+++       .....++.++|..++.+
T Consensus         2 ~v~~~m~--~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~-------~~~~~~v~~~~~~~~~~   72 (121)
T d1vr9a3           2 KVKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLD-------LDLDSSVFNKVSLPDFF   72 (121)
T ss_dssp             BGGGGCB--SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTT-------SCTTSBSGGGCBCTTCC
T ss_pred             Cchhhhc--CCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhh-------hhccccccccccCccEE
Confidence            3677887  8899999999999999999999999999998 899999999999962       12245899999999999


Q ss_pred             eeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       222 v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      +++++++.++++.|.+++..++||+|++|+++|+||..|++++...
T Consensus        73 v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3          73 VHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             EETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             ECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998654

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.83  E-value=1.6e-20  Score=137.29  Aligned_cols=121  Identities=17%  Similarity=0.217  Sum_probs=103.9

Q ss_pred             ccccccc---CCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHh
Q 023512           42 PVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (281)
Q Consensus        42 ~v~dim~---~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (281)
                      +|+|+|.   ++++++++++|+.+|+++|.+++++++||+++++++|++|..|+++.....                   
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~~~~vGiit~~Di~~~~~~~-------------------   63 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLL-------------------   63 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGS-------------------
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEccchhhhhhhh-------------------
Confidence            6888887   478999999999999999999999999999999999999999997642100                   


Q ss_pred             hhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHH
Q 023512          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  198 (281)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~  198 (281)
                         +              ......++.++|.  .++.++.+++++.++++.|.+++++++||+++|+++|+||..|++++
T Consensus        64 ---~--------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~GiIt~~Dil~~  124 (127)
T d2rc3a1          64 ---D--------------KPVKDTQVKEIMT--RQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKD  124 (127)
T ss_dssp             ---S--------------SCGGGSBGGGTSB--CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             ---c--------------ccccceeEeeecc--ceeEEeccCccHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHH
Confidence               0              0112345788887  78999999999999999999999999999999999999999999976


Q ss_pred             HH
Q 023512          199 VI  200 (281)
Q Consensus       199 ~~  200 (281)
                      ++
T Consensus       125 ~i  126 (127)
T d2rc3a1         125 AI  126 (127)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.83  E-value=2.3e-20  Score=136.28  Aligned_cols=115  Identities=22%  Similarity=0.331  Sum_probs=102.8

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHc-----CccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcccccccccc
Q 023512          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (281)
Q Consensus       143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~  216 (281)
                      ++..+|.  +++.+++++.|+.+|++.|+++     +++.+||+| +|++.|+++.++++       ......++.++|+
T Consensus         2 taG~iM~--~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~-------~~~~~~~v~~im~   72 (127)
T d2ouxa2           2 TAGAIMT--TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLI-------VNDDDTLIADILN   72 (127)
T ss_dssp             BHHHHCB--SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHT-------TSCTTSBHHHHSB
T ss_pred             ChhHhCC--CCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccc-------cccccEEhhhhcc
Confidence            3456787  8899999999999999999876     368899999 99999999999995       2233568999999


Q ss_pred             CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (281)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~  266 (281)
                      ++++++.+++++.+|++.|.+++++++||+|++|+++|+||..||+++..
T Consensus        73 ~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~  122 (127)
T d2ouxa2          73 ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID  122 (127)
T ss_dssp             SCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             CCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998754

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.83  E-value=1.2e-20  Score=140.65  Aligned_cols=126  Identities=18%  Similarity=0.128  Sum_probs=110.4

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcC-----CCCcccccccccc
Q 023512          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-----LPADSTLVEKVMT  216 (281)
Q Consensus       143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~-----~~~~~~~v~~~~~  216 (281)
                      +++++|+  +++.++++++|+.+|++.|.+++++++||++ ++++.|+++..|+++.+....     ......+++++|+
T Consensus         3 ~V~~iMt--~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~im~   80 (141)
T d3ddja1           3 PVKVFMS--TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMV   80 (141)
T ss_dssp             BHHHHSB--CSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHSB
T ss_pred             eeHHhCc--CCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccccccccCCCHHHHhC
Confidence            5788998  6799999999999999999999999999999 889999999999975443221     1122457999999


Q ss_pred             CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhchHH
Q 023512          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATEI  270 (281)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~~~  270 (281)
                      ++++++.+++++.++++.|.+++++++||+|++|+++|+||.+||+++......
T Consensus        81 ~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~~~  134 (141)
T d3ddja1          81 TNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILV  134 (141)
T ss_dssp             CCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999998766543

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.83  E-value=8.6e-20  Score=133.12  Aligned_cols=112  Identities=21%  Similarity=0.343  Sum_probs=96.4

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCccEEEEEe---CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCCeeeeCCCCH
Q 023512          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPI  228 (281)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l  228 (281)
                      .+++++++++|+.+|++.|.+++++++||+|   +++++|+||.+|+++ ....    .......++..+++++++++++
T Consensus         5 ~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~-~~~~----~~~~~~~~~~~~~~~~~~~~~l   79 (126)
T d1zfja4           5 IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRF-ISDY----NAPISEHMTSEHLVTAAVGTDL   79 (126)
T ss_dssp             SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHH-CSCS----SSBTTTSCCCSCCCCEETTCCH
T ss_pred             eCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHH-hhcc----CCceeeeeeccceeecCCCCCH
Confidence            4578999999999999999999999999998   578999999999963 2211    1223445566788999999999


Q ss_pred             HHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhch
Q 023512          229 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (281)
Q Consensus       229 ~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~~  268 (281)
                      .+|+++|.+++++++||+|++|+++|+||++||+++...+
T Consensus        80 ~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~~p  119 (126)
T d1zfja4          80 ETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFP  119 (126)
T ss_dssp             HHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHCT
T ss_pred             HHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhhCc
Confidence            9999999999999999999999999999999999987654

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.82  E-value=7.2e-20  Score=139.10  Aligned_cols=145  Identities=14%  Similarity=0.105  Sum_probs=110.8

Q ss_pred             CCcccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC---CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHH
Q 023512           38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN---GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (281)
Q Consensus        38 ~~~~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~---~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~  114 (281)
                      ..+.+|+|+|+++++++++++|+.+|+++|.+++++++||+++   +.++|+++..|++............         
T Consensus         8 ~~~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~---------   78 (160)
T d2d4za3           8 KYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRR---------   78 (160)
T ss_dssp             CSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSS---------
T ss_pred             ccceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccc---------
Confidence            3478999999999999999999999999999999999999973   6899999999998765443211000         


Q ss_pred             hhHhhhhCCCCCChhhHHH--HHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeH
Q 023512          115 EGVEKHWGTSISGPNTFIE--TLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTS  192 (281)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~  192 (281)
                           ..............  ..........+.++|.  .++.++.+++++.++++.|.+++++++||+++|+++|+||+
T Consensus        79 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~g~lvGiIt~  151 (160)
T d2d4za3          79 -----QPFEEMLTLEEIYRWEQREKNVVVNFETCRID--QSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVAL  151 (160)
T ss_dssp             -----SCCCSCCBHHHHHHHHHHHTTCBCCTTSSCEE--CCSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEH
T ss_pred             -----cchhhccccchhhhhhhhhcccccceeeeccc--CCCEEEcCCCCHHHHHHHHHHcCCeEEEEEECCEEEEEEEH
Confidence                 00000011111111  1122234455677887  78999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 023512          193 KDILMR  198 (281)
Q Consensus       193 ~di~~~  198 (281)
                      +|+++.
T Consensus       152 ~Di~k~  157 (160)
T d2d4za3         152 AEIQAA  157 (160)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999844

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=2.1e-20  Score=141.67  Aligned_cols=122  Identities=18%  Similarity=0.183  Sum_probs=106.4

Q ss_pred             CCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcC-----------------
Q 023512          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-----------------  203 (281)
Q Consensus       142 ~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~-----------------  203 (281)
                      .++.++|.  ++++++++++++.+|++.|.+++++++||+| +|+++|++|..|+++......                 
T Consensus         4 ~~v~~~m~--r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (156)
T d2yzqa1           4 VEIEPYYQ--RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWIL   81 (156)
T ss_dssp             CBSTTTSB--SCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC-----------------
T ss_pred             CCHHHHhc--CCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhhhh
Confidence            46888998  8899999999999999999999999999998 899999999999964222110                 


Q ss_pred             ------------CCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhh
Q 023512          204 ------------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (281)
Q Consensus       204 ------------~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~  265 (281)
                                  ......++.++|++++.++.+++++.++.+.|.+++.+++||+|++|+++|+||.+||+++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          82 ESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             ---------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             hhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence                        01124578899999999999999999999999999999999999999999999999999874

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=7.3e-21  Score=138.08  Aligned_cols=117  Identities=29%  Similarity=0.433  Sum_probs=87.5

Q ss_pred             ccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhh
Q 023512           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (281)
Q Consensus        41 ~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (281)
                      ++++++|+++++++++++++.+|+++|.+++++.+||+|+ |+++|+|+..|++...                       
T Consensus         1 m~v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~-----------------------   57 (122)
T d2yzqa2           1 MRVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNP-----------------------   57 (122)
T ss_dssp             CBHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC---------------------------
T ss_pred             CCcccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhh-----------------------
Confidence            4789999999999999999999999999999999999985 9999999999986431                       


Q ss_pred             hhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHH
Q 023512          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  198 (281)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~  198 (281)
                                          ....+.++|.  ++++++++++++.++++.|.+++.+++||+| +|+++|+||.+|++++
T Consensus        58 --------------------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~  115 (122)
T d2yzqa2          58 --------------------DEEQLAMLVK--RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRR  115 (122)
T ss_dssp             --------------------------CCCB--SCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             --------------------cccchhhccc--cceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHH
Confidence                                1124667776  7789999999999999999999999999999 8999999999999966


Q ss_pred             HHhc
Q 023512          199 VISQ  202 (281)
Q Consensus       199 ~~~~  202 (281)
                      ++.+
T Consensus       116 ~~~~  119 (122)
T d2yzqa2         116 YFAK  119 (122)
T ss_dssp             TTTT
T ss_pred             HHhH
Confidence            5543

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=3.8e-20  Score=138.17  Aligned_cols=116  Identities=22%  Similarity=0.326  Sum_probs=104.1

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHc-----CccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcccccccccc
Q 023512          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (281)
Q Consensus       143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~  216 (281)
                      ++..+|+  +++.++++++|+.+|++.|+++     ++..+||++ +|+++|+++.+|++.       .....++.++|.
T Consensus         2 taG~iM~--~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~-------~~~~~~v~~im~   72 (144)
T d2yvxa2           2 EAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIV-------ADPRTRVAEIMN   72 (144)
T ss_dssp             SSGGGCB--SCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTT-------SCTTCBSTTTSB
T ss_pred             CcccccC--CCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhh-------cccccchHHhcc
Confidence            4678898  7899999999999999999776     378899999 899999999999952       223458999999


Q ss_pred             CCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      ++++++.+++++.+|++.|.+++++++||||++|+++|+||..||+++...
T Consensus        73 ~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2          73 PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             SSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHH
T ss_pred             cCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999987654

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.81  E-value=8.1e-20  Score=135.99  Aligned_cols=127  Identities=20%  Similarity=0.404  Sum_probs=107.0

Q ss_pred             ccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhh
Q 023512           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (281)
Q Consensus        41 ~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (281)
                      .||+++|+++++++++++|+.+|+++|.+++++++||+++ ++++|+++..|+++.........                
T Consensus         2 ~~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~----------------   65 (141)
T d3ddja1           2 FPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKL----------------   65 (141)
T ss_dssp             CBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHT----------------
T ss_pred             EeeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhcccccc----------------
Confidence            4899999999999999999999999999999999999985 89999999999977643321110                


Q ss_pred             hhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHH
Q 023512          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  198 (281)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~  198 (281)
                                     ........++.++|.  ++++++.+++++.++++.|.+++.+++||+| +|+++|+||.+|+++.
T Consensus        66 ---------------~~~~~~~~~v~~im~--~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~  128 (141)
T d3ddja1          66 ---------------DPDYFYGKVVKDVMV--TNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIA  128 (141)
T ss_dssp             ---------------CTHHHHTCBHHHHSB--CCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             ---------------ccccccCCCHHHHhC--cccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHH
Confidence                           001123446788887  7899999999999999999999999999998 8999999999999865


Q ss_pred             HH
Q 023512          199 VI  200 (281)
Q Consensus       199 ~~  200 (281)
                      +.
T Consensus       129 l~  130 (141)
T d3ddja1         129 LH  130 (141)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.81  E-value=6e-20  Score=135.67  Aligned_cols=122  Identities=28%  Similarity=0.293  Sum_probs=106.0

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEeeeHHHHHHHHHhcCCC---------Cccccccc
Q 023512          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP---------ADSTLVEK  213 (281)
Q Consensus       143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Givt~~di~~~~~~~~~~---------~~~~~v~~  213 (281)
                      +++++|.  ++++++++++++.+|++.|.+++++++||+|+ +++|+++..|+++.+......         ....++++
T Consensus         2 ~V~~lM~--~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~-~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   78 (135)
T d3ddja2           2 NIETLMI--KNPPILSKEDRLGSAFKKINEGGIGRIIVANE-KIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIID   78 (135)
T ss_dssp             SGGGTCE--ESCCEECTTSBHHHHHHHTTGGGCCEEEEESS-SEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGGG
T ss_pred             EeeEEee--CCCeEECCCCcHHHHHHHHHHhCCeEEEEEec-ceeceeeccchhhhhccccccchhhhhccccccCCHHH
Confidence            4788998  67889999999999999999999999999875 599999999997443322111         12457999


Q ss_pred             cccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       214 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      +|+.++.++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++++..
T Consensus        79 im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          79 YMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             TSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGG
T ss_pred             HhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998764

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.80  E-value=2.3e-19  Score=131.73  Aligned_cols=120  Identities=20%  Similarity=0.307  Sum_probs=102.7

Q ss_pred             CccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe---CCeeeEeeeHHHHHHHHHhcCCCCccccccccccCCC
Q 023512          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (281)
Q Consensus       143 ~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~  219 (281)
                      +++++|.  ++++++++++|+.+|++.|.+++++++||++   +++++|+++..|+++.+... ... . .....+...+
T Consensus         2 ~V~dim~--~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~-~~~-~-~~~~~~~~~~   76 (131)
T d2riha1           2 RTSELLK--RPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR-LDL-D-GPAMPIANSP   76 (131)
T ss_dssp             BGGGGCC--SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT-CCT-T-SBSGGGCBCC
T ss_pred             CHHHhcc--CCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccc-ccc-c-cccccccccc
Confidence            4788997  7899999999999999999999999999994   67899999999997544443 222 1 2334455788


Q ss_pred             eeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      .++.+++++.+++++|.+++++++||+|++|+++|+||..||+++...
T Consensus        77 ~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~~~  124 (131)
T d2riha1          77 ITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI  124 (131)
T ss_dssp             CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred             eeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999987543

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=2.1e-19  Score=130.07  Aligned_cols=116  Identities=19%  Similarity=0.153  Sum_probs=103.6

Q ss_pred             ccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhh
Q 023512           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (281)
Q Consensus        41 ~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (281)
                      ++|+++|+++++++++++|+.+|++.|.+++++++||+++ ++++|+++..|++..                        
T Consensus         1 m~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~------------------------   56 (121)
T d1vr9a3           1 MKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL------------------------   56 (121)
T ss_dssp             CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTS------------------------
T ss_pred             CCchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhh------------------------
Confidence            4789999999999999999999999999999999999985 999999999998532                        


Q ss_pred             hhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHH
Q 023512          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  198 (281)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~  198 (281)
                                         ....++.++|.  .++.++++++++.++++.|.+++..++||+| +|+++|+||..|+++.
T Consensus        57 -------------------~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~  115 (121)
T d1vr9a3          57 -------------------DLDSSVFNKVS--LPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEA  115 (121)
T ss_dssp             -------------------CTTSBSGGGCB--CTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             -------------------hcccccccccc--CccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHH
Confidence                               12346788887  7788999999999999999999999999999 8999999999999965


Q ss_pred             HHh
Q 023512          199 VIS  201 (281)
Q Consensus       199 ~~~  201 (281)
                      +..
T Consensus       116 l~~  118 (121)
T d1vr9a3         116 LIE  118 (121)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.80  E-value=1.1e-19  Score=135.30  Aligned_cols=119  Identities=19%  Similarity=0.198  Sum_probs=103.8

Q ss_pred             ccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhh
Q 023512           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (281)
Q Consensus        41 ~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (281)
                      ++|+|+|++++.++++++++.+|++.|.+++++.+||+++ |+++|+++..|+++.....                    
T Consensus         3 m~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~--------------------   62 (142)
T d1pvma4           3 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPR--------------------   62 (142)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGG--------------------
T ss_pred             EEHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhh--------------------
Confidence            5899999999999999999999999999999999999986 8999999999997652110                    


Q ss_pred             hhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHH
Q 023512          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (281)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~  197 (281)
                        +.              .....++.++|.  +++.++++++++.++++.|.+++.+++||+| +|+++|+||..|+++
T Consensus        63 --~~--------------~~~~~~v~~im~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~  123 (142)
T d1pvma4          63 --NK--------------KPDEVPIRLVMR--KPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSR  123 (142)
T ss_dssp             --CC--------------CGGGSBGGGTSB--SSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTT
T ss_pred             --cc--------------cccccccccccc--cccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHH
Confidence              00              112335788887  7899999999999999999999999999999 889999999999984

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.80  E-value=4.2e-19  Score=133.88  Aligned_cols=115  Identities=14%  Similarity=0.152  Sum_probs=100.0

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccccccc------cCCCeeeeC
Q 023512          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVM------TPNPECATI  224 (281)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~------~~~~~~v~~  224 (281)
                      ++++++.+++|+.+|++.|.+++++++||++ +|+++|++|..|+++.+..........++.++|      ..++.++.+
T Consensus        12 ~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~   91 (153)
T d2ooxe2          12 SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRA   91 (153)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSCCCSSCCCEECT
T ss_pred             CCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccccccccchhhheeeeecccCCCeEECC
Confidence            5799999999999999999999999999999 889999999999985555444443444566555      356678999


Q ss_pred             CCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512          225 DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (281)
Q Consensus       225 ~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~  266 (281)
                      ++++.++++.|.+++.+++||+|++|+++|+||++|++++..
T Consensus        92 ~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~  133 (153)
T d2ooxe2          92 TDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYII  133 (153)
T ss_dssp             TCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             CCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence            999999999999999999999999999999999999999854

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=4.3e-19  Score=131.81  Aligned_cols=114  Identities=15%  Similarity=0.089  Sum_probs=93.0

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCcccccc------ccccCCCeeeeC
Q 023512          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVE------KVMTPNPECATI  224 (281)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~------~~~~~~~~~v~~  224 (281)
                      +++.++.+++|+.+|++.|.+++++++||++ +|+++|++|..|+++.+...........+.      ..+..+++++++
T Consensus        17 ~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   96 (140)
T d2nyca1          17 DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTK   96 (140)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHCC------CEECT
T ss_pred             CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccccccccchhhhhhhhhhcccccEEECC
Confidence            7899999999999999999999999999999 889999999999985554443322222222      233467789999


Q ss_pred             CCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhh
Q 023512          225 DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (281)
Q Consensus       225 ~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~  265 (281)
                      ++++.++++.|.+++++++||+|++|+++|+||.+|++++.
T Consensus        97 ~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l  137 (140)
T d2nyca1          97 NDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI  137 (140)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             CCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            99999999999999999999999999999999999999985

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=7.4e-19  Score=131.32  Aligned_cols=121  Identities=21%  Similarity=0.320  Sum_probs=101.7

Q ss_pred             ccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcC--------------CCCcc
Q 023512          144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN--------------LPADS  208 (281)
Q Consensus       144 v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~--------------~~~~~  208 (281)
                      +.++|.  .++.++++++++.+|++.|.+++++++||+| +|+++|++|..|+++.+....              .....
T Consensus         6 v~~~m~--~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (145)
T d1o50a3           6 VCKLIS--LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIA   83 (145)
T ss_dssp             HTTSSC--CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSS
T ss_pred             hHHhCC--CCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccchhHHHHhhhhhccc
Confidence            556676  7789999999999999999999999999999 899999999999985443211              11112


Q ss_pred             ccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       209 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                      .+++++| .+++++.+++++.+|+++|.+++.+++||+|++|+++|+||.+||+++..+
T Consensus        84 ~~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~  141 (145)
T d1o50a3          84 KNASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK  141 (145)
T ss_dssp             CBHHHHC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             cCHHHHc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence            3455555 567899999999999999999999999999999999999999999998654

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.78  E-value=1.1e-19  Score=134.18  Aligned_cols=129  Identities=18%  Similarity=0.243  Sum_probs=105.2

Q ss_pred             ccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeCCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhh
Q 023512           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH  120 (281)
Q Consensus        41 ~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (281)
                      ++|+++|.++++++++++++.+|+++|.+++++++||+|+ +++|+++..+++.........                  
T Consensus         1 m~V~~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~-~lvg~~~~~~~~~~~~~~~~~------------------   61 (135)
T d3ddja2           1 MNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE-KIEGLLTTRDLLSTVESYCKD------------------   61 (135)
T ss_dssp             SSGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS-SEEEEEEHHHHHGGGTTCC--------------------
T ss_pred             CEeeEEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec-ceeceeeccchhhhhcccccc------------------
Confidence            4799999999999999999999999999999999999865 799999999987643211000                  


Q ss_pred             hCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHH
Q 023512          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  199 (281)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~  199 (281)
                               .............+++++|.  .++.++++++++.+|++.|.+++++++||+| +|+++|+||.+|++ ++
T Consensus        62 ---------~~~~~~~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil-~~  129 (135)
T d3ddja2          62 ---------SCSQGDLYHISTTPIIDYMT--PNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFL-LL  129 (135)
T ss_dssp             ----------CCHHHHHHHHTSBGGGTSE--ESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHG-GG
T ss_pred             ---------chhhhhccccccCCHHHHhC--CccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHH-HH
Confidence                     00011122334567899998  8899999999999999999999999999999 89999999999998 44


Q ss_pred             H
Q 023512          200 I  200 (281)
Q Consensus       200 ~  200 (281)
                      +
T Consensus       130 ~  130 (135)
T d3ddja2         130 Y  130 (135)
T ss_dssp             G
T ss_pred             H
Confidence            3

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.78  E-value=2.2e-19  Score=132.07  Aligned_cols=125  Identities=14%  Similarity=0.171  Sum_probs=102.0

Q ss_pred             ccccccccc--CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 023512           40 ETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (281)
Q Consensus        40 ~~~v~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (281)
                      +.+|+++|.  ++++++++++|+.+|+++|.+++++++||+|+ |+++|+++..|++.+.....                
T Consensus         1 e~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~----------------   64 (132)
T d1yava3           1 EATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLE----------------   64 (132)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSS----------------
T ss_pred             CCCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhccc----------------
Confidence            368999994  68999999999999999999999999999986 99999999999987632100                


Q ss_pred             HhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHH
Q 023512          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (281)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di  195 (281)
                           ..           ........++.++|.  .++.++++++++.+++..|.+++  .+||+| +|+++|+||.+|+
T Consensus        65 -----~~-----------~~~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~di  124 (132)
T d1yava3          65 -----RI-----------EFEKLDQITVEEVML--TDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVV  124 (132)
T ss_dssp             -----SB-----------CGGGTTTSBHHHHSB--CSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHH
T ss_pred             -----cc-----------ccccccccccccccc--ccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHH
Confidence                 00           001233456778887  78999999999999999998764  489998 8999999999999


Q ss_pred             HHHHH
Q 023512          196 LMRVI  200 (281)
Q Consensus       196 ~~~~~  200 (281)
                      ++.+.
T Consensus       125 l~~l~  129 (132)
T d1yava3         125 LKELN  129 (132)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            95543

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=5.2e-19  Score=132.18  Aligned_cols=136  Identities=18%  Similarity=0.218  Sum_probs=103.3

Q ss_pred             cccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEee-CCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhh
Q 023512           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH  120 (281)
Q Consensus        42 ~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d-~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (281)
                      .+.++|+++++++++++|+.+|++.|.+++++++||+| +++++|+++..|++.............              
T Consensus         5 ~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~~--------------   70 (145)
T d1o50a3           5 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPK--------------   70 (145)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC---------------
T ss_pred             EhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccch--------------
Confidence            46778999999999999999999999999999999998 499999999999987654332110000              


Q ss_pred             hCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHH
Q 023512          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  199 (281)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~  199 (281)
                              ...............+.++|   .++.++.+++++.+|++.|.+++.+++||+| +|+++|+||.+|+++.+
T Consensus        71 --------~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l  139 (145)
T d1o50a3          71 --------EELIRSSMKRLIAKNASEIM---LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLAL  139 (145)
T ss_dssp             --------------CCCCCSSCBHHHHC---BCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             --------hHHHHhhhhhccccCHHHHc---CCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHH
Confidence                    00000000112233455555   4577899999999999999999999999998 89999999999999655


Q ss_pred             Hhc
Q 023512          200 ISQ  202 (281)
Q Consensus       200 ~~~  202 (281)
                      ..+
T Consensus       140 ~~~  142 (145)
T d1o50a3         140 WKG  142 (145)
T ss_dssp             HHS
T ss_pred             Hhc
Confidence            543

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.78  E-value=7.1e-19  Score=128.29  Aligned_cols=112  Identities=13%  Similarity=0.216  Sum_probs=99.0

Q ss_pred             cccccccCCCeEecCCchHHHHHHHhHhC-----CCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 023512           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (281)
Q Consensus        42 ~v~dim~~~~~~v~~~~~l~~a~~~m~~~-----~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (281)
                      ++..+|+++++++++++|+.+|++.|.++     .++.+||+|+ ++++|+++..+++..                    
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~--------------------   61 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN--------------------   61 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS--------------------
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccccc--------------------
Confidence            57889999999999999999999999876     4789999985 999999999888532                    


Q ss_pred             hHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHH
Q 023512          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  194 (281)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~d  194 (281)
                                             ....++.++|.  +++.++++++++.+|++.|.+++++++||+| +|+++|+||..|
T Consensus        62 -----------------------~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~D  116 (127)
T d2ouxa2          62 -----------------------DDDTLIADILN--ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDD  116 (127)
T ss_dssp             -----------------------CTTSBHHHHSB--SCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHH
T ss_pred             -----------------------cccEEhhhhcc--CCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHH
Confidence                                   12245788887  7899999999999999999999999999998 899999999999


Q ss_pred             HHHH
Q 023512          195 ILMR  198 (281)
Q Consensus       195 i~~~  198 (281)
                      ++..
T Consensus       117 il~~  120 (127)
T d2ouxa2         117 IIDV  120 (127)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9843

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=4.1e-19  Score=134.86  Aligned_cols=129  Identities=19%  Similarity=0.169  Sum_probs=107.8

Q ss_pred             hcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe--CCeeeEeeeHHHHHHHHHhcCCCC----------
Q 023512          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPA----------  206 (281)
Q Consensus       139 ~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~di~~~~~~~~~~~----------  206 (281)
                      +...++.|+|.+..++++++.++++.+|++.|.+++++++||++  +++++|++|..|++..+.......          
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~   89 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEH   89 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGC
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhh
Confidence            44567899998767899999999999999999999999999997  689999999999985443221100          


Q ss_pred             ----ccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEec-CCCcEEEEEEhhhHHHhhhc
Q 023512          207 ----DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVD-RDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       207 ----~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~~~~~~Gvis~~di~~~~~~  267 (281)
                          ......+.|.++++++++++++.+++++|.+++.+++||+| ++|+++|+||.+||+++...
T Consensus        90 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~  155 (159)
T d2v8qe2          90 KIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKL  155 (159)
T ss_dssp             BHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHH
T ss_pred             hcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHH
Confidence                01233467778899999999999999999999999999998 56899999999999998654

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.78  E-value=1.1e-18  Score=132.49  Aligned_cols=122  Identities=14%  Similarity=0.049  Sum_probs=104.6

Q ss_pred             CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe---CCeeeEeeeHHHHHHHHHhcCC-------------
Q 023512          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNL-------------  204 (281)
Q Consensus       141 ~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~di~~~~~~~~~-------------  204 (281)
                      .-++.++|+  +++.++++++|+.+|++.|.+++++.+||++   ++.++|+++..|+++.+.....             
T Consensus        10 ~~~V~diM~--~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~   87 (160)
T d2d4za3          10 NIQVGDIMV--RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTL   87 (160)
T ss_dssp             SCBTTSSSB--SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBH
T ss_pred             ceEHHHhcC--CCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhcccc
Confidence            347899998  8899999999999999999999999999998   3689999999999754432110             


Q ss_pred             -----------CCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhh
Q 023512          205 -----------PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (281)
Q Consensus       205 -----------~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~  265 (281)
                                 ......+.++|.+.++++.+++++.++++.|.+.+++++||++ +|+++|+||++||+++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I  158 (160)
T d2d4za3          88 EEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAI  158 (160)
T ss_dssp             HHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             chhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHh
Confidence                       0112345668889999999999999999999999999999998 79999999999999975

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1e-18  Score=130.50  Aligned_cols=115  Identities=16%  Similarity=0.164  Sum_probs=98.2

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHHHhcCCCCccccc------cccccCCCeeeeC
Q 023512          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLV------EKVMTPNPECATI  224 (281)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~~~~~~~~~~~~v------~~~~~~~~~~v~~  224 (281)
                      +++.++++++|+.+|++.|.+++++++||++ +|+++|++|..|+++.+..........++      ...+..++.++.+
T Consensus        20 ~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~   99 (145)
T d2v8qe1          20 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYL   99 (145)
T ss_dssp             SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCCSCCEECT
T ss_pred             CCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccchhhhhhhccchhhhccCCCeEECC
Confidence            5689999999999999999999999999999 88999999999997544443332222232      3345678899999


Q ss_pred             CCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhh
Q 023512          225 DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (281)
Q Consensus       225 ~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~  266 (281)
                      ++++.++++.|.+++.+++||+|++|+++|+||.+||+++..
T Consensus       100 ~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1         100 HETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHH
Confidence            999999999999999999999999999999999999999853

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=7.2e-19  Score=131.09  Aligned_cols=114  Identities=19%  Similarity=0.213  Sum_probs=100.7

Q ss_pred             cccccccCCCeEecCCchHHHHHHHhHhCC-----CcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 023512           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGK-----FRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (281)
Q Consensus        42 ~v~dim~~~~~~v~~~~~l~~a~~~m~~~~-----~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (281)
                      ++..+|+++++++++++|+.+|++.|.+++     ++.+||+++ ++++|+++..|+...                    
T Consensus         2 taG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~--------------------   61 (144)
T d2yvxa2           2 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA--------------------   61 (144)
T ss_dssp             SSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTS--------------------
T ss_pred             CcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhc--------------------
Confidence            578999999999999999999999998774     788999985 999999999998531                    


Q ss_pred             hHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHH
Q 023512          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  194 (281)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~d  194 (281)
                                             ....++.++|.  +++.++++++++.+|++.|.+++.+++||+| +|+++|+||.+|
T Consensus        62 -----------------------~~~~~v~~im~--~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~D  116 (144)
T d2yvxa2          62 -----------------------DPRTRVAEIMN--PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDD  116 (144)
T ss_dssp             -----------------------CTTCBSTTTSB--SSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHH
T ss_pred             -----------------------ccccchHHhcc--cCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHH
Confidence                                   22346888998  8899999999999999999999999999999 799999999999


Q ss_pred             HHHHHH
Q 023512          195 ILMRVI  200 (281)
Q Consensus       195 i~~~~~  200 (281)
                      +++.+.
T Consensus       117 il~~l~  122 (144)
T d2yvxa2         117 VLDVLE  122 (144)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            985443

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.76  E-value=5e-18  Score=124.47  Aligned_cols=116  Identities=17%  Similarity=0.218  Sum_probs=97.5

Q ss_pred             ccccccccCCCeEecCCchHHHHHHHhHhCCCcEeeEee---CCeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhH
Q 023512           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (281)
Q Consensus        41 ~~v~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d---~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~  117 (281)
                      ++|+|+|+++++++++++|+.+|++.|.+++++++||++   +++++|+++..|+++.....                  
T Consensus         1 ~~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~------------------   62 (131)
T d2riha1           1 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR------------------   62 (131)
T ss_dssp             CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT------------------
T ss_pred             CCHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccc------------------
Confidence            479999999999999999999999999999999999994   38899999999997653211                  


Q ss_pred             hhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                                           .........+.  .++.++.+++++.++++.|.+++++++||+| +|+++|+||..|++
T Consensus        63 ---------------------~~~~~~~~~~~--~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll  119 (131)
T d2riha1          63 ---------------------LDLDGPAMPIA--NSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC  119 (131)
T ss_dssp             ---------------------CCTTSBSGGGC--BCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHH
T ss_pred             ---------------------ccccccccccc--ccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHH
Confidence                                 11111222232  6688899999999999999999999999998 89999999999998


Q ss_pred             H
Q 023512          197 M  197 (281)
Q Consensus       197 ~  197 (281)
                      +
T Consensus       120 ~  120 (131)
T d2riha1         120 F  120 (131)
T ss_dssp             S
T ss_pred             H
Confidence            4

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.76  E-value=4.9e-18  Score=123.63  Aligned_cols=110  Identities=17%  Similarity=0.273  Sum_probs=91.9

Q ss_pred             ccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC---CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhCC
Q 023512           47 MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN---GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGT  123 (281)
Q Consensus        47 m~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~---~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (281)
                      |.++|+++.|++|+.+|+++|.+++++++||+|+   ++++|+++..|+...                            
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~----------------------------   54 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI----------------------------   54 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC----------------------------
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHh----------------------------
Confidence            6678889999999999999999999999999983   789999999998542                            


Q ss_pred             CCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHHHH
Q 023512          124 SISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  199 (281)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~~~  199 (281)
                                    ..........|. ..++.++++++++.+|++.|.+++++++||++ +|+++|+||.+|+++..
T Consensus        55 --------------~~~~~~~~~~~~-~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~  116 (126)
T d1zfja4          55 --------------SDYNAPISEHMT-SEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVI  116 (126)
T ss_dssp             --------------SCSSSBTTTSCC-CSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             --------------hccCCceeeeee-ccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHh
Confidence                          011112223333 16788999999999999999999999999998 89999999999998544

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.75  E-value=1.6e-18  Score=134.10  Aligned_cols=137  Identities=17%  Similarity=0.198  Sum_probs=110.9

Q ss_pred             HHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe--CCeeeEeeeHHHHHHHHHhc----CCC
Q 023512          132 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQ----NLP  205 (281)
Q Consensus       132 ~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~di~~~~~~~----~~~  205 (281)
                      +..+...+...++.++|.+..++++++++.++.+|+..|.+++++++||++  +++++|++|..|+++.+...    ...
T Consensus        10 ~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~   89 (179)
T d2ooxe1          10 LKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFP   89 (179)
T ss_dssp             HHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCG
T ss_pred             HHHHHHHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccch
Confidence            344455556667889998767899999999999999999999999999998  48999999999998654421    000


Q ss_pred             C--------------ccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCC-----cEEEEEEhhhHHHhhh
Q 023512          206 A--------------DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG-----DVVDVVDVIHITHAAV  266 (281)
Q Consensus       206 ~--------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~-----~~~Gvis~~di~~~~~  266 (281)
                      .              ........|.++++++++++++.+|++.|.+++.+++||+|++|     +++|+||.+||+++..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~  169 (179)
T d2ooxe1          90 EAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFIS  169 (179)
T ss_dssp             GGGGGGGGSBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHH
T ss_pred             hhhhhhhccchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHH
Confidence            0              01123346778899999999999999999999999999998654     6999999999999865


Q ss_pred             ch
Q 023512          267 AT  268 (281)
Q Consensus       267 ~~  268 (281)
                      .+
T Consensus       170 ~~  171 (179)
T d2ooxe1         170 MN  171 (179)
T ss_dssp             TT
T ss_pred             Hh
Confidence            54

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.75  E-value=7.2e-20  Score=132.28  Aligned_cols=110  Identities=19%  Similarity=0.290  Sum_probs=59.9

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCccEEEEEe----CCeeeEeeeHHHHHHHHHhcCCCCccccccccc--cCCCeeeeCC
Q 023512          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV----ENKPRGILTSKDILMRVISQNLPADSTLVEKVM--TPNPECATID  225 (281)
Q Consensus       152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~----~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~--~~~~~~v~~~  225 (281)
                      .+++++++++|+.+|++.|.+++++++||++    +++++|++|.+|+. .......   ..++..++  .+++.++.++
T Consensus         4 ~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~-~~~~~~~---~~~~~~~~~~~~~~~~v~~~   79 (120)
T d1jr1a4           4 TDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDID-FLKEEEH---DRFLEEIMTKREDLVVAPAG   79 (120)
T ss_dssp             CTTCC----CCCC--CCBC---------------CTTCCC--------------------------CCSBTTTSCCEETT
T ss_pred             cCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeee-ehhcccc---CceeEEEEeeccCceEECCC
Confidence            4567899999999999999999999999997    46899999999984 3333222   23455544  3568999999


Q ss_pred             CCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhh
Q 023512          226 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (281)
Q Consensus       226 ~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~  265 (281)
                      +++.+|+++|.+++++++||+|++|+++|+||++||+++.
T Consensus        80 ~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          80 ITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKNR  119 (120)
T ss_dssp             CCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhcc
Confidence            9999999999999999999999999999999999999863

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=6.5e-18  Score=128.09  Aligned_cols=137  Identities=17%  Similarity=0.147  Sum_probs=103.2

Q ss_pred             ccccccccc--CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC--CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 023512           40 ETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (281)
Q Consensus        40 ~~~v~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~--~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (281)
                      +.+++|+|.  .++++++.++|+.+|+++|.+++++++||+++  ++++|+++..|++.................     
T Consensus        12 ~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~-----   86 (159)
T d2v8qe2          12 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYEL-----   86 (159)
T ss_dssp             HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCG-----
T ss_pred             CCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhh-----
Confidence            568999995  47899999999999999999999999999973  899999999999887544322111100000     


Q ss_pred             hHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe--CCeeeEeeeHH
Q 023512          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSK  193 (281)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~  193 (281)
                                 .... .....     ....++|.  .+++++++++++.++++.|.+++.+++||++  +|+++|+||++
T Consensus        87 -----------~~~~-~~~~~-----~~~~~~~~--~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~  147 (159)
T d2v8qe2          87 -----------EEHK-IETWR-----EVYLQDSF--KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHK  147 (159)
T ss_dssp             -----------GGCB-HHHHH-----HHHSSSSC--CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHH
T ss_pred             -----------hhhh-ccccc-----ceeeeeec--cceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHH
Confidence                       0000 00010     11344554  7789999999999999999999999999997  58999999999


Q ss_pred             HHHHHHH
Q 023512          194 DILMRVI  200 (281)
Q Consensus       194 di~~~~~  200 (281)
                      |+++.+.
T Consensus       148 dilk~l~  154 (159)
T d2v8qe2         148 RILKFLK  154 (159)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9995553

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=1e-17  Score=124.21  Aligned_cols=129  Identities=18%  Similarity=0.217  Sum_probs=95.7

Q ss_pred             ccccccc---ccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 023512           40 ETPVSKV---MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (281)
Q Consensus        40 ~~~v~di---m~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (281)
                      +.++.++   |.++++++++++|+.+|++.|.+++++++||+|+ ++++|+++..|++............          
T Consensus         5 ~~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~~----------   74 (140)
T d2nyca1           5 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLS----------   74 (140)
T ss_dssp             GSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CC----------
T ss_pred             cCcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccccccc----------
Confidence            4566654   6789999999999999999999999999999985 8999999999998764322111000          


Q ss_pred             hHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHH
Q 023512          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  194 (281)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~d  194 (281)
                                   ......+.       ....+.  .++.++++++++.++++.|.+++.+++||+| +|+++|+||.+|
T Consensus        75 -------------~~~~~~~~-------~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~D  132 (140)
T d2nyca1          75 -------------LSVGEALM-------RRSDDF--EGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSD  132 (140)
T ss_dssp             -------------SBHHHHHH-------HCC--------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHH
T ss_pred             -------------cchhhhhh-------hhhhcc--cccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHH
Confidence                         00000000       111121  5688999999999999999999999999998 999999999999


Q ss_pred             HHHHHH
Q 023512          195 ILMRVI  200 (281)
Q Consensus       195 i~~~~~  200 (281)
                      +++.++
T Consensus       133 ii~~l~  138 (140)
T d2nyca1         133 ILKYIL  138 (140)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            986554

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.5e-17  Score=126.08  Aligned_cols=123  Identities=13%  Similarity=0.179  Sum_probs=100.1

Q ss_pred             ccccccCCC--ce--eEeCCCCcHHHHHHHHHHcCccEEEEEe---CCeeeEeeeHHHHHHHHHhcC-------------
Q 023512          144 LSTIIPEKS--KV--VTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQN-------------  203 (281)
Q Consensus       144 v~~~m~~~~--~~--~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~di~~~~~~~~-------------  203 (281)
                      ..|+|.|..  ++  +.+.++.|+.++.++|.+++++.+||++   +++++|++|.+|++..+....             
T Consensus         5 a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~   84 (169)
T d2j9la1           5 AMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIY   84 (169)
T ss_dssp             HHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEE
T ss_pred             hhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchhhh
Confidence            456776532  22  4457888999999999999999999994   678999999999985543210             


Q ss_pred             ----------CCCccccccccccCCCeeeeCCCCHHHHHHHhHhCCCCeeeEecCCCcEEEEEEhhhHHHhhhc
Q 023512          204 ----------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (281)
Q Consensus       204 ----------~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvis~~di~~~~~~  267 (281)
                                ......+++++|++++.++.+++++.+++++|.+++.+++||++ +|+++|+||++||+++...
T Consensus        85 ~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1          85 FTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             CSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             hcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                      11123468899999999999999999999999999999999987 7999999999999998643

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.72  E-value=9.9e-18  Score=129.58  Aligned_cols=144  Identities=13%  Similarity=0.097  Sum_probs=104.7

Q ss_pred             Cccccccccc--CCCeEecCCchHHHHHHHhHhCCCcEeeEee-C-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHH
Q 023512           39 EETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (281)
Q Consensus        39 ~~~~v~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d-~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~  114 (281)
                      .+.++.|+|.  .++++++++.|+.+|++.|.+++++++||+| + ++++|++|..|++................. .. 
T Consensus        18 ~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~-~~-   95 (179)
T d2ooxe1          18 RSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIA-EI-   95 (179)
T ss_dssp             HHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGG-GG-
T ss_pred             cCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhh-hh-
Confidence            4568999996  5889999999999999999999999999998 4 899999999999887554332211110000 00 


Q ss_pred             hhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CC-----eeeE
Q 023512          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN-----KPRG  188 (281)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~-----~~~G  188 (281)
                             .      .........   .......|.  .+++++++++++.+++..|.+++.+++||+| +|     +++|
T Consensus        96 -------~------~~~~~~~~~---~~~~~~~~~--~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvg  157 (179)
T d2ooxe1          96 -------D------KFRLLGLRE---VERKIGAIP--PETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVS  157 (179)
T ss_dssp             -------G------GSBHHHHHH---HHHHTTCSC--SSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEE
T ss_pred             -------h------ccchhhhcc---cceeeeecc--cCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEE
Confidence                   0      000000100   011233454  7899999999999999999999999999998 43     6999


Q ss_pred             eeeHHHHHHHHHhc
Q 023512          189 ILTSKDILMRVISQ  202 (281)
Q Consensus       189 ivt~~di~~~~~~~  202 (281)
                      ++|++||++.+...
T Consensus       158 iiT~~dIlk~l~~~  171 (179)
T d2ooxe1         158 VLTQYRILKFISMN  171 (179)
T ss_dssp             EEEHHHHHHHHHTT
T ss_pred             EEeHHHHHHHHHHh
Confidence            99999999655443

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.70  E-value=6.9e-19  Score=127.03  Aligned_cols=111  Identities=9%  Similarity=0.178  Sum_probs=59.6

Q ss_pred             ccCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC----CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhC
Q 023512           47 MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWG  122 (281)
Q Consensus        47 m~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~----~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (281)
                      |.++|+++.|++|+.+|+++|.+++++++||+|+    ++++|++|.+|+.......                       
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~-----------------------   58 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEE-----------------------   58 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTTCCC--------------------------------------
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccc-----------------------
Confidence            5678889999999999999999999999999973    7899999999974321110                       


Q ss_pred             CCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHHH
Q 023512          123 TSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (281)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~~  197 (281)
                                       ...++..+|...+++.++.+++++.+|+++|.+++++++||+| +|+++|+||.+|+++
T Consensus        59 -----------------~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k  117 (120)
T d1jr1a4          59 -----------------HDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKK  117 (120)
T ss_dssp             ------------------------CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHH
T ss_pred             -----------------cCceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhh
Confidence                             0112334444336789999999999999999999999999999 899999999999984

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.70  E-value=1.1e-16  Score=120.47  Aligned_cols=129  Identities=16%  Similarity=0.178  Sum_probs=98.0

Q ss_pred             ccccccc---CCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHHhhH
Q 023512           42 PVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (281)
Q Consensus        42 ~v~dim~---~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~~~~  117 (281)
                      |+++++.   ++++++.+++|+.+|+++|.+++++++||+++ ++++|+++..|++........      .         
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~------~---------   66 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDY------S---------   66 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCG------G---------
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccc------c---------
Confidence            5666653   48999999999999999999999999999986 899999999999765321100      0         


Q ss_pred             hhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHHHHH
Q 023512          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (281)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~di~  196 (281)
                                  .......+.+.   ....+.  .++.++.+++++.++++.|.+++.+++||+| +|+++|+||..|++
T Consensus        67 ------------~~~~~v~~~~~---~~~~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil  129 (153)
T d2ooxe2          67 ------------NLDLSVGEALL---KRPANF--DGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADIL  129 (153)
T ss_dssp             ------------GGGSBHHHHHH---TSCCCS--SCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHH
T ss_pred             ------------ccccchhhhee---eeeccc--CCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHH
Confidence                        00000111111   112222  6688999999999999999999999999998 89999999999999


Q ss_pred             HHHHhc
Q 023512          197 MRVISQ  202 (281)
Q Consensus       197 ~~~~~~  202 (281)
                      +.++..
T Consensus       130 ~~~~~~  135 (153)
T d2ooxe2         130 NYIIYD  135 (153)
T ss_dssp             HHHHSC
T ss_pred             HHHHcC
Confidence            666543

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.2e-17  Score=126.37  Aligned_cols=147  Identities=13%  Similarity=0.110  Sum_probs=103.0

Q ss_pred             cccccccccC----CC--eEecCCchHHHHHHHhHhCCCcEeeEee---CCeEEEEEehHHHHHHHHHHHHHHHHhhhhH
Q 023512           40 ETPVSKVMTR----NP--TFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAI  110 (281)
Q Consensus        40 ~~~v~dim~~----~~--~~v~~~~~l~~a~~~m~~~~~~~~pV~d---~~~~vGvi~~~dll~~~~~~~~~~~~~~~~~  110 (281)
                      ++.++|+|.+    ++  +.+.+++|+.+|.++|.+++++++||++   +++++|+++.+|++.+.............  
T Consensus         2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~--   79 (169)
T d2j9la1           2 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVS--   79 (169)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCT--
T ss_pred             ccchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhccccccccccc--
Confidence            3467889964    22  4457789999999999999999999994   37899999999998764332110000000  


Q ss_pred             HHHHhhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEeCCeeeEee
Q 023512          111 AAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGIL  190 (281)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Giv  190 (281)
                           .....++.....      .........++.++|.  +++.++.+++++.++++.|.+++.+++||.++|+++|+|
T Consensus        80 -----~~~~~~~~~~~~------~~~~~~~~~~v~~im~--~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~g~lvGiI  146 (169)
T d2j9la1          80 -----TSIIYFTEHSPP------LPPYTPPTLKLRNILD--LSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGII  146 (169)
T ss_dssp             -----TCEEECSSSCCC------CCTTCCCCEECGGGEE--SSCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEE
T ss_pred             -----chhhhhcccchh------hhhccccccchhhhcc--CCCEEECCCCcHHHHHHHHHhcCceEEEEEECCEEEEEE
Confidence                 000000000000      0001223445788998  678999999999999999999999999999999999999


Q ss_pred             eHHHHHHHHHh
Q 023512          191 TSKDILMRVIS  201 (281)
Q Consensus       191 t~~di~~~~~~  201 (281)
                      |++|+++.+..
T Consensus       147 t~~Dil~~l~~  157 (169)
T d2j9la1         147 TKKDVLKHIAQ  157 (169)
T ss_dssp             EHHHHHHHHHH
T ss_pred             EHHHHHHHHHH
Confidence            99999955544

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.9e-16  Score=117.99  Aligned_cols=132  Identities=19%  Similarity=0.218  Sum_probs=99.7

Q ss_pred             Ccccccccc---cCCCeEecCCchHHHHHHHhHhCCCcEeeEeeC-CeEEEEEehHHHHHHHHHHHHHHHHhhhhHHHHH
Q 023512           39 EETPVSKVM---TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (281)
Q Consensus        39 ~~~~v~dim---~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV~d~-~~~vGvi~~~dll~~~~~~~~~~~~~~~~~~~~~  114 (281)
                      -+.++++++   .++++++.+++|+.+|+++|.+++++++||+++ ++++|+++..|++......               
T Consensus         7 ~~~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~---------------   71 (145)
T d2v8qe1           7 MSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEK---------------   71 (145)
T ss_dssp             GGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSS---------------
T ss_pred             hhCCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcc---------------
Confidence            345677764   357899999999999999999999999999995 8999999999986532110               


Q ss_pred             hhHhhhhCCCCCChhhHHHHHHHhhcCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCccEEEEEe-CCeeeEeeeHH
Q 023512          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK  193 (281)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~  193 (281)
                              ........    ..+..   .....|.  .++.++.+++++.++++.|.+++.+++||+| +|+++|+||.+
T Consensus        72 --------~~~~~~~~----v~~~~---~~~~~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~  134 (145)
T d2v8qe1          72 --------TYNNLDVS----VTKAL---QHRSHYF--EGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLS  134 (145)
T ss_dssp             --------CCCCCSSB----HHHHG---GGCCSCC--CSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHH
T ss_pred             --------cccchhhh----hhhcc---chhhhcc--CCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHH
Confidence                    00000000    00011   1223343  6788999999999999999999999999998 89999999999


Q ss_pred             HHHHHHHhc
Q 023512          194 DILMRVISQ  202 (281)
Q Consensus       194 di~~~~~~~  202 (281)
                      |+++.++..
T Consensus       135 dii~~lv~~  143 (145)
T d2v8qe1         135 DILQALVLT  143 (145)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHHhc
Confidence            999766643