Citrus Sinensis ID: 023530

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
Protein Sequence
MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMHMPKHMILTDKGCLCSTRISQGRKTCKLIPHNFLLN
Secondary Structure (PSIPRED)
cccHHHccccHHHHHcccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHcccccccccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHcccccEEEEcccccccEEEEEEEcccHHHHHHHHHHHccccccEEEEEEccccccccccHHHHHHHccccEEEEccccHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHcccEEEEccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHcccccHHHHHccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHccccEEEcHccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHccccEEEEEEcccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHcccEEHHHHHHHHccHHHHHHHcccEEEEEEccccccccccccccccHHEcccccccEEEEcccccccEEcccccccc
Coil and Loop (DISEMBL)
MPLLRRLSSSLQQVVKFTNRsfkslkfpgepiessvsptlthgihvfhcpdeVGIVAKLSECIAsrggnilaadvfvpekknvfysrsefifdpikwpreqmdEDFFKLSKMFNAMRsvvrvpdidpkYKVAVLASKQEHCLVDFLygwqegklpvEITCVisnhdrgpnshVIRFLErhgipyhylcaKENEREEELLELVQNTDFLVLARYmqpvplqkeAYLGYKLLESlsskgsltsyfnmhmpkhmiltdkgclcstrisqgrktckliphnflln
Flexible Loop (DISEMBL)
mpllrrlsssLQQVVKFTnrsfkslkfpgePIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSefifdpikwprEQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMHMPKHMILTDKGCLCSTRISqgrktckliphnflln
Low Complexity Region (SEG)
MPllrrlssslQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKenereeellelVQNTDFLVLARYMQPVPLQKEAylgyklleslsskgsltsyFNMHMPKHMILTDKGCLCSTRISQGRKTCKLIPHNFLLN
Disordered region (IsUnstruct)
***************************************LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMHMPKHMILTDKGCLCSTRISQGRKTCKLIPHNFL**
Disordered Region (DISOPRED)
*******************************************IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMHMPKHMILTDKGCLCSTRISQGRKTCKLIPHNFLLN
Disordered Region (DISEMBL)
MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMHMPKHMILTDKGCLCSTRISQGRKTCKLIPHNFLLN
Disordered Region (DISPRO)
****************************************THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMHMPKHMILTDKGCLCSTRISQGRKTCKLIPHNFLLN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMHMPKHMILTDKGCLCSTRISQGRKTCKLIPHNFLLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	281	2.2.26 [Sep-21-2011]
O34990	300	Formyltetrahydrofolate de	yes	no	0.565	0.53	0.323	4e-18
Q55135	284	Formyltetrahydrofolate de	N/A	no	0.565	0.559	0.337	4e-17
P0A5T6	310	Formyltetrahydrofolate de	yes	no	0.569	0.516	0.308	5e-13
P0A5T7	310	Formyltetrahydrofolate de	yes	no	0.569	0.516	0.308	5e-13
P37051	280	Formyltetrahydrofolate de	N/A	no	0.530	0.532	0.265	5e-11
P0A441	280	Formyltetrahydrofolate de	yes	no	0.530	0.532	0.265	6e-11
P0A440	280	Formyltetrahydrofolate de	yes	no	0.530	0.532	0.265	6e-11
Q46339	286	Formyltetrahydrofolate de	N/A	no	0.572	0.562	0.287	1e-10
Q03432	278	Formyltetrahydrofolate de	yes	no	0.533	0.539	0.318	9e-10

>sp|O34990|PURU_BACSU Formyltetrahydrofolate deformylase OS=Bacillus subtilis (strain 168) GN=purU PE=3 SV=2

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 95/173 (54%), Gaps = 14/173 (8%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFF 107
           CPD+ GIV+ +S  +   G NI+ ++ +  + +   F+ R EF    I+  +  +   F 
Sbjct: 26  CPDQPGIVSAVSAFLFEHGANIIESNQYTTDPEGGRFFLRIEFDCAGIREKKSSLQAAFA 85

Query: 108 KLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR 167
            +++ F+   S+    ++    +VA+  SK+ HCL + ++ WQ G L  EI  VISNH+ 
Sbjct: 86  SVAEKFDMTWSLTLASELK---RVAIFVSKELHCLHELIWEWQTGNLMAEIAVVISNHEE 142

Query: 168 GPNSHVIRFLERHGIPYHYLCAKEN---EREEELLELVQ--NTDFLVLARYMQ 215
                    +ER  IP+HY+ A ++   E E++ LEL++  + D +VLARYMQ
Sbjct: 143 AR-----ELVERLNIPFHYMKANKDIRAEVEKKQLELLEQYDVDVIVLARYMQ 190

Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 0

>sp|Q55135|PURU_SYNY3 Formyltetrahydrofolate deformylase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=purU PE=3 SV=1

 Score = 89.0 bits (219), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 13/172 (7%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CPD+ GIVA++++ I    GNI+ AD        +F +R E+  D  +  R ++   + +
Sbjct: 12  CPDQPGIVAQIAQFIYQNQGNIIHADQHTDFSSGLFLNRVEWQLDNFRLSRPELLSAWSQ 71

Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
           L++   A   +    D  P+  +A+  SKQ+HCL+D L+ W+ G+L  EI  +ISNH   
Sbjct: 72  LAEQLQATWQI-HFSDQLPR--LALWVSKQDHCLLDILWRWRSGELRCEIPLIISNH--- 125

Query: 169 PNSHVIRFLERHGIPYHYL-CAKENEREEELLELV----QNTDFLVLARYMQ 215
           P+   I   ++ GI +H L   KEN+  +E  EL        D +VLA+Y+Q
Sbjct: 126 PDLKSIA--DQFGIDFHCLPITKENKLAQETAELALLKQYQIDLVVLAKYLQ 175

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|P0A5T6|PURU_MYCTU Formyltetrahydrofolate deformylase OS=Mycobacterium tuberculosis GN=purU PE=3 SV=1

 Score = 75.1 bits (183), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 18/178 (10%)

Query: 46  VFHCPDEVGIVAKLSECIASRGGNILAAD--VFVPEKKNVFYSRSEFIFDPIKWPREQMD 103
           +  C D  GI+A +S  +A  G NI++ D     PE    F  R+ F    +    +++ 
Sbjct: 34  LLRCHDRPGIIAAVSTFLARAGANIISLDQHSTAPEG-GTFLQRAIFHLPGLTAAVDELQ 92

Query: 104 EDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
            DF   S + +      R  +     +VA++AS ++HCL+D L+  + G+L + +  VI+
Sbjct: 93  RDFG--STVADKFGIDYRFAEAAKPKRVAIMASTEDHCLLDLLWRNRRGELEMSVVMVIA 150

Query: 164 NHDRGPN--SHVIRFLERHGIPYHYLCAKENEREE----ELLELVQNTDFLVLARYMQ 215
           NH   P+  +HV  F    G+P+ ++ A  + R E    +L  L  N D +VLARYMQ
Sbjct: 151 NH---PDLAAHVRPF----GVPFIHIPATRDTRTEAEQRQLQLLSGNVDLVVLARYMQ 201

Mycobacterium tuberculosis (taxid: 1773)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|P0A5T7|PURU_MYCBO Formyltetrahydrofolate deformylase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=purU PE=3 SV=1

 Score = 75.1 bits (183), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 18/178 (10%)

Query: 46  VFHCPDEVGIVAKLSECIASRGGNILAAD--VFVPEKKNVFYSRSEFIFDPIKWPREQMD 103
           +  C D  GI+A +S  +A  G NI++ D     PE    F  R+ F    +    +++ 
Sbjct: 34  LLRCHDRPGIIAAVSTFLARAGANIISLDQHSTAPEG-GTFLQRAIFHLPGLTAAVDELQ 92

Query: 104 EDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
            DF   S + +      R  +     +VA++AS ++HCL+D L+  + G+L + +  VI+
Sbjct: 93  RDFG--STVADKFGIDYRFAEAAKPKRVAIMASTEDHCLLDLLWRNRRGELEMSVVMVIA 150

Query: 164 NHDRGPN--SHVIRFLERHGIPYHYLCAKENEREE----ELLELVQNTDFLVLARYMQ 215
           NH   P+  +HV  F    G+P+ ++ A  + R E    +L  L  N D +VLARYMQ
Sbjct: 151 NH---PDLAAHVRPF----GVPFIHIPATRDTRTEAEQRQLQLLSGNVDLVVLARYMQ 201

Mycobacterium bovis (taxid: 1765)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|P37051|PURU_ECOLI Formyltetrahydrofolate deformylase OS=Escherichia coli (strain K12) GN=purU PE=1 SV=1

 Score = 68.6 bits (166), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 28/177 (15%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CPD+ G++A+++        NI+  + FV  +   F+ R+E              E  F 
Sbjct: 13  CPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTEL-------------EGIFN 59

Query: 109 LSKMFNAMRSVV---RVPDIDP--KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
            S +   + S +    V +++P  + ++ +L +K+ HCL D L     G L VEI  VI 
Sbjct: 60  DSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIG 119

Query: 164 NHDRGPNSHVIRFLERHGIPYHYLCAK---ENEREEELLELVQ--NTDFLVLARYMQ 215
           NHD      +   +ER  IP+  +  +    NE ++++ + +     D++VLA+YM+
Sbjct: 120 NHDT-----LRSLVERFDIPFELVSHEGLTRNEHDQKMADAIDAYQPDYVVLAKYMR 171

Produces formate from formyl-tetrahydrofolate. Provides the major source of formate for the purT-dependent synthesis of 5'-phosphoribosyl-N-formylglycinamide (FGAR) during aerobic growth. Has a role in regulating the one-carbon pool.

Escherichia coli (strain K12) (taxid: 83333)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|P0A441|PURU_SHIFL Formyltetrahydrofolate deformylase OS=Shigella flexneri GN=purU PE=3 SV=1

 Score = 68.6 bits (166), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 28/177 (15%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CPD+ G++A+++        NI+  + FV  +   F+ R+E              E  F 
Sbjct: 13  CPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTEL-------------EGIFN 59

Query: 109 LSKMFNAMRSVV---RVPDIDP--KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
            S +   + S +    V +++P  + ++ +L +K+ HCL D L     G L VEI  VI 
Sbjct: 60  DSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIG 119

Query: 164 NHDRGPNSHVIRFLERHGIPYHYLCAK---ENEREEELLELVQ--NTDFLVLARYMQ 215
           NHD      +   +ER  IP+  +  +    NE ++++ + +     D++VLA+YM+
Sbjct: 120 NHDT-----LRSLVERFDIPFELVSHEGLSRNEHDQKMADAIDAYQPDYVVLAKYMR 171

Produces formate from formyl-tetrahydrofolate. Provides the major source of formate for the purT-dependent synthesis of 5'-phosphoribosyl-N-formylglycinamide (FGAR) during aerobic growth. Has a role in regulating the one-carbon pool.

Shigella flexneri (taxid: 623)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|P0A440|PURU_ECOL6 Formyltetrahydrofolate deformylase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=purU PE=3 SV=1

 Score = 68.6 bits (166), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 28/177 (15%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CPD+ G++A+++        NI+  + FV  +   F+ R+E              E  F 
Sbjct: 13  CPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTEL-------------EGIFN 59

Query: 109 LSKMFNAMRSVV---RVPDIDP--KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163
            S +   + S +    V +++P  + ++ +L +K+ HCL D L     G L VEI  VI 
Sbjct: 60  DSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIG 119

Query: 164 NHDRGPNSHVIRFLERHGIPYHYLCAK---ENEREEELLELVQ--NTDFLVLARYMQ 215
           NHD      +   +ER  IP+  +  +    NE ++++ + +     D++VLA+YM+
Sbjct: 120 NHDT-----LRSLVERFDIPFELVSHEGLSRNEHDQKMADAIDAYQPDYVVLAKYMR 171

Produces formate from formyl-tetrahydrofolate. Provides the major source of formate for the purT-dependent synthesis of 5'-phosphoribosyl-N-formylglycinamide (FGAR) during aerobic growth. Has a role in regulating the one-carbon pool.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|Q46339|PURU_CORS1 Formyltetrahydrofolate deformylase OS=Corynebacterium sp. (strain P-1) GN=purU PE=3 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 13/174 (7%)

Query: 47  FHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDF 106
             CP+ +GIV  ++  +      I+    +        + R +F  D      + +  +F
Sbjct: 11  LQCPEGIGIVHAVTGFLVRHQRTIVELKQYDDMSAGRLFLRVDFAGDSAPDLLDALRSEF 70

Query: 107 FKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHD 166
            +++  F+ M   +R  +   K KV ++ SK EHCL D L+    G LP+E+  V SNH 
Sbjct: 71  SEVAAKFD-MDWQLR--ERGQKTKVLIMVSKFEHCLQDLLFRMHSGDLPIEVVGVASNH- 126

Query: 167 RGPNSHVIRFLERHGIPYHYLCAKENER---EEELLELVQNT--DFLVLARYMQ 215
             P+   +  +E +GI +H++   ++ +   E  LLEL+  T  + +VLARYMQ
Sbjct: 127 --PDHRSL--VEWYGIGFHHIPISKDTKPRAEAALLELIDQTGAELVVLARYMQ 176

Corynebacterium sp. (strain P-1) (taxid: 69006)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|Q03432|PURU_HAEIN Formyltetrahydrofolate deformylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=purU PE=3 SV=2

 Score = 64.3 bits (155), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 26/176 (14%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF--IFDPIKWPREQMDEDF 106
           CPD+ G++AK++        NIL  + FV  +   F+ R+E   IF+        + ED 
Sbjct: 11  CPDDKGLIAKITNICYKHQLNILHNNEFVDFETKHFFMRTELEGIFN-----EATLLEDL 65

Query: 107 -FKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
            + L +  N      R+     K ++ +L +K+ HCL D L     G L VEI  VI NH
Sbjct: 66  KYSLPEETNC-----RLIGTQRK-RIVILVTKEAHCLGDILMKNYYGALDVEIAAVIGNH 119

Query: 166 DRGPNSHVIRFLERHGIPYHYLCAKEN----EREEELLELVQ--NTDFLVLARYMQ 215
           D     ++   +ER  IP+H L + EN    E ++ L E +     D++VLA+YM+
Sbjct: 120 D-----NLRELVERFNIPFH-LVSHENLTRVEHDKLLAEKIDEYTPDYIVLAKYMR 169

Produces formate from formyl-tetrahydrofolate. Provides the major source of formate for the purT-dependent synthesis of 5'-phosphoribosyl-N-formylglycinamide (FGAR) during aerobic growth. Has a role in regulating the one-carbon pool.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
359495984	329	PREDICTED: formyltetrahydrofolate deform	0.765	0.653	0.767	2e-95
255579631	341	phosphoribosylamine-glycine ligase, puta	0.747	0.615	0.773	4e-94
449458970	326	PREDICTED: formyltetrahydrofolate deform	0.765	0.659	0.722	2e-89
358248700	316	uncharacterized protein LOC100780134 [Gl	0.729	0.648	0.722	2e-86
224074167	317	formyltetrahydrofolate deformylase [Popu	0.711	0.630	0.727	7e-86
356563338	316	PREDICTED: formyltetrahydrofolate deform	0.729	0.648	0.717	2e-85
224138620	317	formyltetrahydrofolate deformylase [Popu	0.661	0.586	0.741	2e-82
357502477	324	Formyltetrahydrofolate deformylase [Medi	0.743	0.645	0.711	2e-82
217071818	324	unknown [Medicago truncatula]	0.743	0.645	0.711	2e-82
388513597	322	unknown [Medicago truncatula]	0.743	0.649	0.711	2e-82

>gi|359495984|ref|XP_003635126.1| PREDICTED: formyltetrahydrofolate deformylase-like [Vitis vinifera] gi|297744389|emb|CBI37363.3| unnamed protein product [Vitis vinifera]

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 168/219 (76%), Positives = 190/219 (86%), Gaps = 4/219 (1%)

Query: 1   MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPI---ESSVSPTLTHGIHVFHCPDEVGIVA 57
           M L RRLS+SL Q++ FTNRSFKSLKFP + +    SS   +L HGIHVFHCPD VGIVA
Sbjct: 1   MSLRRRLSTSLPQLLGFTNRSFKSLKFPQQSLHCFNSSSESSLAHGIHVFHCPDGVGIVA 60

Query: 58  KLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117
           KLS+CIASRGGNIL AD+FVPE K VFYSRSEFIFDP KWPR QMDEDF KLS MFNAM+
Sbjct: 61  KLSDCIASRGGNILGADIFVPENKKVFYSRSEFIFDPAKWPRAQMDEDFLKLSNMFNAMK 120

Query: 118 SVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL 177
           SVVRVP +DPKYK++VLASKQ+HCLVD L+GWQ+G+LPV+ITCVISNHDRGPN+HV RFL
Sbjct: 121 SVVRVPILDPKYKISVLASKQDHCLVDLLHGWQDGRLPVDITCVISNHDRGPNTHVFRFL 180

Query: 178 ERHGIPYHYL-CAKENEREEELLELVQNTDFLVLARYMQ 215
           ERHGIPYHYL   KEN+RE E+L+LVQ+TDFLVLARYMQ
Sbjct: 181 ERHGIPYHYLHTTKENKREGEILDLVQDTDFLVLARYMQ 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579631|ref|XP_002530656.1| phosphoribosylamine-glycine ligase, putative [Ricinus communis] gi|223529789|gb|EEF31725.1| phosphoribosylamine-glycine ligase, putative [Ricinus communis]

 Score =  350 bits (898), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 164/212 (77%), Positives = 190/212 (89%), Gaps = 2/212 (0%)

Query: 5   RRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIA 64
           RR+SS + QV  F NRSFKSLK PGE ++SS SP LTHGIHVFHCPD VGIVAKLS+CIA
Sbjct: 6   RRISSVIPQVFGFANRSFKSLKTPGEFLDSS-SPCLTHGIHVFHCPDAVGIVAKLSDCIA 64

Query: 65  SRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPD 124
           SRGGNIL ADVFVPE KNVFYSRSEF+ D IKWPR Q+DEDF KLSKMF+AM+SVVRVPD
Sbjct: 65  SRGGNILGADVFVPENKNVFYSRSEFVCDRIKWPRAQIDEDFLKLSKMFHAMKSVVRVPD 124

Query: 125 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184
           +DPK+K+AVLASKQEHCL+D L+ WQ+G+ P+EITCVISNH+RGPN+H+IRFLER+GIPY
Sbjct: 125 LDPKFKIAVLASKQEHCLIDLLHRWQDGRFPIEITCVISNHERGPNTHLIRFLERNGIPY 184

Query: 185 HYLC-AKENEREEELLELVQNTDFLVLARYMQ 215
           HYLC  KEN+RE E+L+LV++TDFLVLARYMQ
Sbjct: 185 HYLCTTKENKREMEILDLVKDTDFLVLARYMQ 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458970|ref|XP_004147219.1| PREDICTED: formyltetrahydrofolate deformylase-like [Cucumis sativus] gi|449504944|ref|XP_004162337.1| PREDICTED: formyltetrahydrofolate deformylase-like [Cucumis sativus]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 156/216 (72%), Positives = 178/216 (82%), Gaps = 1/216 (0%)

Query: 1   MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLS 60
           M L+RR+SSS  +V  F NRS  SL  PGE ++   S +  HGIHVFHCPD VGIVAKLS
Sbjct: 1   MALIRRVSSSFPRVFGFANRSLSSLNSPGEALDLPTSSSFAHGIHVFHCPDAVGIVAKLS 60

Query: 61  ECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV 120
           ECIAS+GGNIL AD+FVPE KNVFYSRS+F+FDP KWPR QMDEDF K+SK FNA +SVV
Sbjct: 61  ECIASKGGNILNADIFVPENKNVFYSRSQFLFDPCKWPRMQMDEDFLKISKTFNAWKSVV 120

Query: 121 RVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH 180
           RVPD DPKYK+A+ ASKQ+HCLVD L+ WQ GKLPVEITCVISNHDR PN+HV+RFLERH
Sbjct: 121 RVPDQDPKYKIAIFASKQDHCLVDLLHQWQGGKLPVEITCVISNHDRAPNTHVMRFLERH 180

Query: 181 GIPYHYL-CAKENEREEELLELVQNTDFLVLARYMQ 215
            I YHYL    +N+RE E+LELV+NTDFLVLARYMQ
Sbjct: 181 DIAYHYLHTYNDNKREGEILELVKNTDFLVLARYMQ 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248700|ref|NP_001240181.1| uncharacterized protein LOC100780134 [Glycine max] gi|255636588|gb|ACU18632.1| unknown [Glycine max]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 156/216 (72%), Positives = 181/216 (83%), Gaps = 11/216 (5%)

Query: 1   MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLS 60
           M + RR+  ++  +VK  N SFKSL  P          +LTHGIHVFHCPD VGIVAKLS
Sbjct: 1   MAMARRVPRNVLGLVK-RNMSFKSLDPPS---------SLTHGIHVFHCPDAVGIVAKLS 50

Query: 61  ECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV 120
           +CIASRGGNILAADVFVPE K+VFYSRS+F+FDP+KWPR QM+EDF KLS+ F A+RSVV
Sbjct: 51  DCIASRGGNILAADVFVPENKHVFYSRSDFVFDPVKWPRVQMEEDFLKLSQTFKAIRSVV 110

Query: 121 RVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH 180
           RVP +DPKYK+AVLASKQ+HCLVD L+GWQ+G+LPV+ITCVISNH RG N+HVIRFLERH
Sbjct: 111 RVPALDPKYKIAVLASKQDHCLVDLLHGWQDGRLPVDITCVISNHHRGSNTHVIRFLERH 170

Query: 181 GIPYHYLC-AKENEREEELLELVQNTDFLVLARYMQ 215
           GIPYHYLC  KEN+RE E+L+LVQNTD LVLARYMQ
Sbjct: 171 GIPYHYLCTTKENKREGEILQLVQNTDILVLARYMQ 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074167|ref|XP_002304283.1| formyltetrahydrofolate deformylase [Populus trichocarpa] gi|222841715|gb|EEE79262.1| formyltetrahydrofolate deformylase [Populus trichocarpa]

 Score =  323 bits (827), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 155/213 (72%), Positives = 181/213 (84%), Gaps = 13/213 (6%)

Query: 5   RRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPT-LTHGIHVFHCPDEVGIVAKLSECI 63
           RR+SS + QV  F  RSFKS          S+ P+ +THGIHVF CPD VGIVAKLSECI
Sbjct: 6   RRVSSRIPQVFGF-GRSFKS----------SLDPSSITHGIHVFQCPDAVGIVAKLSECI 54

Query: 64  ASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123
           ASRGGNIL AD+FVP+ KNVFYSRSEFIFDP+KWPR QMDEDF ++SKMF+A RSVVRVP
Sbjct: 55  ASRGGNILGADIFVPQNKNVFYSRSEFIFDPVKWPRVQMDEDFLRISKMFDATRSVVRVP 114

Query: 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 183
            +DPK+K+AV+ASKQEHCL+D L+ WQ+G+LPV+IT VISNHDRGP++HVIRFLER+GIP
Sbjct: 115 KLDPKFKIAVIASKQEHCLIDLLHSWQDGRLPVDITRVISNHDRGPDTHVIRFLERNGIP 174

Query: 184 YHYL-CAKENEREEELLELVQNTDFLVLARYMQ 215
           YHYL   KEN+REEE+L+LVQNTDFLVLARYMQ
Sbjct: 175 YHYLHTTKENKREEEILDLVQNTDFLVLARYMQ 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563338|ref|XP_003549921.1| PREDICTED: formyltetrahydrofolate deformylase-like [Glycine max]

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 155/216 (71%), Positives = 179/216 (82%), Gaps = 11/216 (5%)

Query: 1   MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLS 60
           M + RR+   +   V+  N SFKSL  P          +LTHGIHVFHCPD VGIVAKLS
Sbjct: 1   MAMARRVPRYVLGSVQ-RNMSFKSLDPPS---------SLTHGIHVFHCPDAVGIVAKLS 50

Query: 61  ECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV 120
           +CIASRGGNILAADVFVPE K VFYSRS+F+FDP+KWPR QM+EDF KLS+ FNA+RSVV
Sbjct: 51  DCIASRGGNILAADVFVPENKQVFYSRSDFVFDPVKWPRVQMEEDFLKLSQTFNAIRSVV 110

Query: 121 RVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH 180
           RVP +DPKYK+AVLASKQ+HCLVD L+GWQ+G+LPV+ITCVISNH RG N+HVIRFLERH
Sbjct: 111 RVPALDPKYKIAVLASKQDHCLVDLLHGWQDGRLPVDITCVISNHHRGSNTHVIRFLERH 170

Query: 181 GIPYHYLC-AKENEREEELLELVQNTDFLVLARYMQ 215
           GIPYH LC  KEN+RE E+L+L+QNTDFLVLARYMQ
Sbjct: 171 GIPYHCLCTTKENKREGEILQLIQNTDFLVLARYMQ 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138620|ref|XP_002326648.1| formyltetrahydrofolate deformylase [Populus trichocarpa] gi|222833970|gb|EEE72447.1| formyltetrahydrofolate deformylase [Populus trichocarpa]

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 146/197 (74%), Positives = 168/197 (85%), Gaps = 11/197 (5%)

Query: 20  RSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE 79
           RSFKS+           S ++THGIHVF CPD VGIVAKLS+CIASRGGNIL ADVFVPE
Sbjct: 21  RSFKSID----------SSSITHGIHVFQCPDAVGIVAKLSDCIASRGGNILGADVFVPE 70

Query: 80  KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE 139
            KNVFYSRSEFIFDP+KWPR QMDEDF ++SKMF+A RSVVRVP +DPK+K AVLASKQE
Sbjct: 71  NKNVFYSRSEFIFDPVKWPRLQMDEDFLRISKMFDATRSVVRVPKLDPKFKTAVLASKQE 130

Query: 140 HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKENEREEEL 198
           HCL+D L+ WQ+G+LPV+IT VISNHDR PN+HV+RFLER+ IPYHYL  +KEN RE+E+
Sbjct: 131 HCLIDLLHSWQDGRLPVDITRVISNHDRFPNTHVVRFLERNSIPYHYLGTSKENNREDEI 190

Query: 199 LELVQNTDFLVLARYMQ 215
           L+LVQNTDFLVLARYMQ
Sbjct: 191 LDLVQNTDFLVLARYMQ 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502477|ref|XP_003621527.1| Formyltetrahydrofolate deformylase [Medicago truncatula] gi|355496542|gb|AES77745.1| Formyltetrahydrofolate deformylase [Medicago truncatula]

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 153/215 (71%), Positives = 180/215 (83%), Gaps = 6/215 (2%)

Query: 3   LLRRLSSSLQQVVKFTNRS-FKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSE 61
           ++RR+S    QV+  TN +  ++  F    +    SP+L+HGIHVFHCPD VGIVAKLSE
Sbjct: 4   VVRRVS----QVLGLTNSNKIRNFSFKSLDLPPLPSPSLSHGIHVFHCPDAVGIVAKLSE 59

Query: 62  CIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121
           CIASRGGNILAADVFVP+ K+VFYSRS+F+FDP+KWPR+QM+EDF KLS+ FNA RSVVR
Sbjct: 60  CIASRGGNILAADVFVPQNKHVFYSRSDFVFDPVKWPRKQMEEDFLKLSQAFNATRSVVR 119

Query: 122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG 181
           VP +DPKYK+AVLASKQ+HCLVD L+GWQ+GKLPV+ITCVISNH R  N+HVIRFLERHG
Sbjct: 120 VPALDPKYKIAVLASKQDHCLVDLLHGWQDGKLPVDITCVISNHHRDSNTHVIRFLERHG 179

Query: 182 IPYHYL-CAKENEREEELLELVQNTDFLVLARYMQ 215
           IPYH L    EN+RE E+LELVQNTDFLVLARYMQ
Sbjct: 180 IPYHCLSTTNENKREGEILELVQNTDFLVLARYMQ 214

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071818|gb|ACJ84269.1| unknown [Medicago truncatula]

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 153/215 (71%), Positives = 180/215 (83%), Gaps = 6/215 (2%)

Query: 3   LLRRLSSSLQQVVKFTNRS-FKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSE 61
           ++RR+S    QV+  TN +  ++  F    +    SP+L+HGIHVFHCPD VGIVAKLSE
Sbjct: 4   VVRRVS----QVLGLTNSNKIRNFSFKSLDLPPLPSPSLSHGIHVFHCPDAVGIVAKLSE 59

Query: 62  CIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121
           CIASRGGNILAADVFVP+ K+VFYSRS+F+FDP+KWPR+QM+EDF KLS+ FNA RSVVR
Sbjct: 60  CIASRGGNILAADVFVPQNKHVFYSRSDFVFDPVKWPRKQMEEDFLKLSQAFNATRSVVR 119

Query: 122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG 181
           VP +DPKYK+AVLASKQ+HCLVD L+GWQ+GKLPV+ITCVISNH R  N+HVIRFLERHG
Sbjct: 120 VPALDPKYKIAVLASKQDHCLVDLLHGWQDGKLPVDITCVISNHHRDSNTHVIRFLERHG 179

Query: 182 IPYHYL-CAKENEREEELLELVQNTDFLVLARYMQ 215
           IPYH L    EN+RE E+LELVQNTDFLVLARYMQ
Sbjct: 180 IPYHCLSTTNENKREGEILELVQNTDFLVLARYMQ 214

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513597|gb|AFK44860.1| unknown [Medicago truncatula]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 153/215 (71%), Positives = 180/215 (83%), Gaps = 6/215 (2%)

Query: 3   LLRRLSSSLQQVVKFTNRS-FKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSE 61
           ++RR+S    QV+  TN +  ++  F    +    SP+L+HGIHVFHCPD VGIVAKLSE
Sbjct: 2   VVRRVS----QVLGLTNSNKIRNFSFKSLDLPPLPSPSLSHGIHVFHCPDAVGIVAKLSE 57

Query: 62  CIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121
           CIASRGGNILAADVFVP+ K+VFYSRS+F+FDP+KWPR+QM+EDF KLS+ FNA RSVVR
Sbjct: 58  CIASRGGNILAADVFVPQNKHVFYSRSDFVFDPVKWPRKQMEEDFLKLSQAFNATRSVVR 117

Query: 122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG 181
           VP +DPKYK+AVLASKQ+HCLVD L+GWQ+GKLPV+ITCVISNH R  N+HVIRFLERHG
Sbjct: 118 VPALDPKYKIAVLASKQDHCLVDLLHGWQDGKLPVDITCVISNHHRDSNTHVIRFLERHG 177

Query: 182 IPYHYL-CAKENEREEELLELVQNTDFLVLARYMQ 215
           IPYH L    EN+RE E+LELVQNTDFLVLARYMQ
Sbjct: 178 IPYHCLSTTNENKREGEILELVQNTDFLVLARYMQ 212

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
TAIR|locus:2130893	328	AT4G17360 [Arabidopsis thalian	0.708	0.606	0.675	6.7e-72
TAIR|locus:505006677	323	AT5G47435 [Arabidopsis thalian	0.686	0.597	0.664	1.8e-69
TIGR_CMR|CPS_4357	286	CPS_4357 "formyltetrahydrofola	0.594	0.583	0.3	2.6e-15
TIGR_CMR|DET_1237	284	DET_1237 "formyltetrahydrofola	0.576	0.570	0.300	3.3e-15
UNIPROTKB|G4MX54	284	MGG_08008 "Formyltetrahydrofol	0.565	0.559	0.317	1.3e-13
TIGR_CMR|CPS_2482	292	CPS_2482 "formyltetrahydrofola	0.615	0.592	0.301	2e-11
TIGR_CMR|CPS_4036	292	CPS_4036 "formyltetrahydrofola	0.615	0.592	0.301	2e-11
TIGR_CMR|CPS_3620	292	CPS_3620 "formyltetrahydrofola	0.615	0.592	0.296	1.8e-10
UNIPROTKB|Q9KQK6	277	VC_1992 "Formyltetrahydrofolat	0.548	0.555	0.275	7.8e-09
TIGR_CMR|VC_1992	277	VC_1992 "formyltetrahydrofolat	0.548	0.555	0.275	7.8e-09

TAIR|locus:2130893 AT4G17360 [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 135/200 (67%), Positives = 160/200 (80%)

Query:    17 FTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76
             FT  SFKS +F GE ++SSVSP L  G HVFHCPD VGIVAKLS+CIA++GGNIL  DVF
Sbjct:    19 FTKWSFKSSQFHGESLDSSVSPLLIPGFHVFHCPDVVGIVAKLSDCIAAKGGNILGYDVF 78

Query:    77 VPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLAS 136
             VPE KNVFYSRSEFIFDP+KWPR QMDEDF  +++ F+A+ SVVRVP +DPKYK+A+L S
Sbjct:    79 VPENKNVFYSRSEFIFDPVKWPRRQMDEDFQTIAQKFSALSSVVRVPSLDPKYKIALLLS 138

Query:   137 KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKXXXXX 195
             KQ+HCLV+ L+ WQ+GKLPV+ITCVISNH+R PN+HV+RFL+RHGI YHYL         
Sbjct:   139 KQDHCLVEMLHKWQDGKLPVDITCVISNHERAPNTHVMRFLQRHGISYHYLPTTDQNKIE 198

Query:   196 XXXXXXVQNTDFLVLARYMQ 215
                   V+ TDFLVLARYMQ
Sbjct:   199 EEILELVKGTDFLVLARYMQ 218

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

GO:0016742 "hydroxymethyl-, formyl- and related transferase activity" evidence=IEA;ISS

GO:0009853 "photorespiration" evidence=IMP

GO:0046653 "tetrahydrofolate metabolic process" evidence=IMP

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:505006677 AT5G47435 [Arabidopsis thaliana (taxid:3702)]

 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 129/194 (66%), Positives = 156/194 (80%)

Query:    23 KSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKN 82
             KS +F GE ++SSVSP L  G+HVFHC D VGIVAKLS+CIA++GGNIL  DVFVPE  N
Sbjct:    20 KSSRFHGESLDSSVSPVLIPGVHVFHCQDAVGIVAKLSDCIAAKGGNILGYDVFVPENNN 79

Query:    83 VFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCL 142
             VFYSRSEFIFDP+KWPR Q+DEDF  +++ + A+ SVVRVP IDPKYK+A+L SKQ+HCL
Sbjct:    80 VFYSRSEFIFDPVKWPRSQVDEDFQTIAQRYGALNSVVRVPSIDPKYKIALLLSKQDHCL 139

Query:   143 VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KXXXXXXXXXXX 201
             V+ L+ WQ+GKLPV+ITCVISNH+R  N+HV+RFLERHGIPYHY+   K           
Sbjct:   140 VEMLHKWQDGKLPVDITCVISNHERASNTHVMRFLERHGIPYHYVSTTKENKREDDILEL 199

Query:   202 VQNTDFLVLARYMQ 215
             V++TDFLVLARYMQ
Sbjct:   200 VKDTDFLVLARYMQ 213

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

GO:0016742 "hydroxymethyl-, formyl- and related transferase activity" evidence=IEA;ISS

GO:0009853 "photorespiration" evidence=IMP

GO:0046653 "tetrahydrofolate metabolic process" evidence=IMP

TIGR_CMR|CPS_4357 CPS_4357 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 54/180 (30%), Positives = 79/180 (43%)

Query:    41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPRE 100
             TH I  + CPD  G++AK+S+ + S G  I     +       F+SR  F    +     
Sbjct:     5 THYILTWQCPDNTGVLAKVSQSLFSHGAFITETSQYSDPYSETFFSRIAFDDRNLTVSSS 64

Query:   101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITC 160
             +  +   +L+K       + +  D+ P   +AV  SK +HCLV  L  W+ G LP+ I  
Sbjct:    65 EFVKALNELAKPLAMQYQLRKRADV-PNVLIAV--SKDDHCLVSLLTKWRSGALPINIVG 121

Query:   161 VISNHDRGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQ 215
             VISNH      +     E H +P+++L                     N D LVLARYMQ
Sbjct:   122 VISNHQ-----YCQALSEWHNVPFYHLPVNAETKLEQEAQITDLMEELNIDLLVLARYMQ 176

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|DET_1237 DET_1237 "formyltetrahydrofolate deformylase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 52/173 (30%), Positives = 80/173 (46%)

Query:    48 HCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107
             HC D+ GI++ +S  I    GNI+  D FV    N F+ R E+        REQM+ +  
Sbjct:     9 HCTDKKGIISSISSFICRNNGNIITLDEFVDHPSNTFFMRLEWDISAFALSREQMEAEIA 68

Query:   108 KLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR 167
              + + +       ++   D K ++AV  SK +HCL D +  ++ G+L  +I  +ISNH  
Sbjct:    69 LMGQEY-CYADNWQIFYSDRKPRLAVFVSKYDHCLWDIMLRYKAGELKCDIPLIISNH-- 125

Query:   168 GPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXV-----QNTDFLVLARYMQ 215
              PN   +  L   GI Y  +                     + DF++LARYMQ
Sbjct:   126 -PNLKPVADL--FGIDYKVVKVTPDNKLEAENEQTCLINEYSIDFMILARYMQ 175

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

UNIPROTKB|G4MX54 MGG_08008 "Formyltetrahydrofolate deformylase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 178 (67.7 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 54/170 (31%), Positives = 81/170 (47%)

Query:    49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
             CPD+ GIV  ++   ASR  NIL    F       F+ R  F   P+    + +  DF  
Sbjct:    13 CPDKPGIVHAVTGIFASRSVNILDLKQFSDTGSQKFFMRVHF--GPVAETAD-LSADFSA 69

Query:   109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH-DR 167
             L+  ++ M   +R P +  K +V ++ SK  HCL D L+  Q G+L V++  ++SNH D 
Sbjct:    70 LASQYDPMTWDIR-P-VAQKTRVLIMVSKIGHCLNDLLFRAQSGRLAVDVALIVSNHPDF 127

Query:   168 GP--NSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQNTDFLVLARYMQ 215
              P   SH + F  RH +P                   ++ + +VLARYMQ
Sbjct:   128 APLAASHGVEF--RH-LPVTKETKTQQEEEILKLAKERDVELIVLARYMQ 174

GO:0005575 "cellular_component" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

TIGR_CMR|CPS_2482 CPS_2482 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 169 (64.5 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 57/189 (30%), Positives = 85/189 (44%)

Query:    34 SSVSP-TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF 92
             S + P + TH I    CP   G V  ++  +  +G  I     F     N F+ R EF  
Sbjct:     2 SDIKPVSQTH-IITADCPSRPGTVDVVTRFLCEKGFYINEIHSFDDTAVNRFFIRIEFRA 60

Query:    93 DPIK-WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQE 151
                  +  E   ++F + +  F     +   P    K KV ++ SK +HCL D LY ++ 
Sbjct:    61 QTATDFSAETFSQEFEQRASEFEMQWQLASSPY---KSKVVIMVSKHDHCLNDLLYRYRT 117

Query:   152 GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKXXXXXXXXXX--XVQNTD-- 206
             G L +EI  +ISNH   P+   +   + HGIPY++L   K             +Q +D  
Sbjct:   118 GDLDIEIPAIISNH---PDLEELA--KWHGIPYYHLPITKDTKPEQEAKVWQIIQESDAD 172

Query:   207 FLVLARYMQ 215
              +VLARYMQ
Sbjct:   173 LVVLARYMQ 181

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|CPS_4036 CPS_4036 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 169 (64.5 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 57/189 (30%), Positives = 85/189 (44%)

Query:    34 SSVSP-TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF 92
             S + P + TH I    CP   G V  ++  +  +G  I     F     N F+ R EF  
Sbjct:     2 SDIKPVSQTH-IITADCPSRPGTVDVVTRFLCEKGFYINEIHSFDDTAVNRFFIRIEFRA 60

Query:    93 DPIK-WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQE 151
                  +  E   ++F + +  F     +   P    K KV ++ SK +HCL D LY ++ 
Sbjct:    61 QTATDFSAETFSQEFEQRASEFEMQWQLASSPY---KSKVVIMVSKHDHCLNDLLYRYRT 117

Query:   152 GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKXXXXXXXXXX--XVQNTD-- 206
             G L +EI  +ISNH   P+   +   + HGIPY++L   K             +Q +D  
Sbjct:   118 GDLDIEIPAIISNH---PDLEELA--KWHGIPYYHLPITKDTKPEQEAKVWQIIQESDAD 172

Query:   207 FLVLARYMQ 215
              +VLARYMQ
Sbjct:   173 LVVLARYMQ 181

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|CPS_3620 CPS_3620 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 163 (62.4 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 56/189 (29%), Positives = 88/189 (46%)

Query:    34 SSVSP-TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF 92
             S + P + TH I    CP + G V  ++  +  +G  I     F    ++ F+ R EF  
Sbjct:     2 SDIKPVSQTHVITA-SCPSQPGTVDVVTRFLFEQGFYINEIHSFDDTDQDRFFIRIEFRA 60

Query:    93 DPI-KWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQE 151
             D    + R+   + F + +  F     +   P    K KV ++ SK +HCL D LY ++ 
Sbjct:    61 DTATNFNRDDFCQQFGERASEFEMKWELASSPY---KSKVVIMVSKHDHCLNDLLYRYRT 117

Query:   152 GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKXXX--XXXXXXXXVQNT--D 206
             G L +EI  +ISNH   P+   +   + H IPY++L   K             +Q++  D
Sbjct:   118 GDLNIEIPAIISNH---PDLEDLA--KWHDIPYYHLPITKETKPEQEAKVFQIIQDSEAD 172

Query:   207 FLVLARYMQ 215
              +VLARYMQ
Sbjct:   173 LVVLARYMQ 181

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

UNIPROTKB|Q9KQK6 VC_1992 "Formyltetrahydrofolate deformylase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 150 (57.9 bits), Expect = 7.8e-09, P = 7.8e-09
 Identities = 48/174 (27%), Positives = 76/174 (43%)

Query:    48 HCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107
             HCPD  G+++K++        NI+  + FV      F+ R+E          E    D  
Sbjct:     9 HCPDAPGLISKITNICYKHQLNIIHNNEFVDNASGHFFMRTEL---------EGYFNDAT 59

Query:   108 KLSKMFNAMRSVVRVPDIDPKYK-VAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHD 166
              L+ + +A+    R   I    K + +L +K+ HCL D L    +G L V+I  V+ N+D
Sbjct:    60 LLADLDHALPQGTRRKLISSSRKRIVILVTKEAHCLGDILMKNYDGSLDVDIAAVVGNYD 119

Query:   167 RGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQ 215
                   + R  ER  IPYH +  +           +        D+LVLA+YM+
Sbjct:   120 T-----LQRLTERFDIPYHCVSHEGLSREAHEQALLDVIDQYQPDYLVLAKYMR 168

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|VC_1992 VC_1992 "formyltetrahydrofolate deformylase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 150 (57.9 bits), Expect = 7.8e-09, P = 7.8e-09
 Identities = 48/174 (27%), Positives = 76/174 (43%)

Query:    48 HCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107
             HCPD  G+++K++        NI+  + FV      F+ R+E          E    D  
Sbjct:     9 HCPDAPGLISKITNICYKHQLNIIHNNEFVDNASGHFFMRTEL---------EGYFNDAT 59

Query:   108 KLSKMFNAMRSVVRVPDIDPKYK-VAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHD 166
              L+ + +A+    R   I    K + +L +K+ HCL D L    +G L V+I  V+ N+D
Sbjct:    60 LLADLDHALPQGTRRKLISSSRKRIVILVTKEAHCLGDILMKNYDGSLDVDIAAVVGNYD 119

Query:   167 RGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQ 215
                   + R  ER  IPYH +  +           +        D+LVLA+YM+
Sbjct:   120 T-----LQRLTERFDIPYHCVSHEGLSREAHEQALLDVIDQYQPDYLVLAKYMR 168

GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.III.1082.1	formyltetrahydrofolate deformylase (EC-2.1.2.2 3.5.1.10) (299 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gdcT1	precursor of carboxylase t-protein 1, glycine decarboxylase complex (EC-2.1.2.10); The glycine [...] (409 aa)						•	•		0.932
	gdcT2	RecName- Full=Aminomethyltransferase; EC=2.1.2.10;; The glycine cleavage system catalyzes the d [...] (409 aa)						•	•		0.932
	SHMT6	RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (472 aa)						•	•		0.913
	SHMT1	RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (472 aa)						•	•		0.913
	SHMT8	serine hydroxymethyltransferase 8 (EC-2.1.2.1); Interconversion of serine and glycine (By simil [...] (530 aa)						•	•		0.913
	GART	hypothetical protein (215 aa)			•			•	•	•	0.913
	SHMT3	precursor of transferase serine hydroxymethyltransferase 3 (EC-2.1.2.1); Interconversion of ser [...] (516 aa)						•	•		0.912
	SHMT2	precursor of transferase serine hydroxymethyltransferase 2 (EC-2.1.2.1); Interconversion of ser [...] (518 aa)						•	•		0.911
	SHMT7	precursor of transferase serine hydroxymethyltransferase 7 (EC-2.1.2.1); Interconversion of ser [...] (521 aa)						•	•		0.911
	FDH1	SubName- Full=Putative uncharacterized protein; (387 aa)						•	•		0.904

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	281
PLN02828	268	PLN02828, PLN02828, formyltetrahydrofolate deformy	1e-110
PRK06027	286	PRK06027, purU, formyltetrahydrofolate deformylase	4e-46
COG0788	287	COG0788, PurU, Formyltetrahydrofolate hydrolase [N	3e-44
TIGR00655	280	TIGR00655, PurU, formyltetrahydrofolate deformylas	8e-35
cd08648	196	cd08648, FMT_core_Formyl-FH4-Hydrolase_C, Formylte	6e-33
PRK13011	286	PRK13011, PRK13011, formyltetrahydrofolate deformy	2e-28
PRK13010	289	PRK13010, purU, formyltetrahydrofolate deformylase	3e-25
cd04875	74	cd04875, ACT_F4HF-DF, N-terminal ACT domain of for	5e-18
cd08645	183	cd08645, FMT_core_GART, Phosphoribosylglycinamide	7e-10
COG0299	200	COG0299, PurN, Folate-dependent phosphoribosylglyc	2e-08
pfam00551	181	pfam00551, Formyl_trans_N, Formyl transferase	1e-06
PRK05647	200	PRK05647, purN, phosphoribosylglycinamide formyltr	9e-06
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	0.001
cd08369	173	cd08369, FMT_core, Formyltransferase, catalytic co	0.004
TIGR00639	190	TIGR00639, PurN, phosphoribosylglycinamide formylt	0.004

>gnl|CDD|178422 PLN02828, PLN02828, formyltetrahydrofolate deformylase

 Score =  319 bits (819), Expect = e-110
 Identities = 123/158 (77%), Positives = 144/158 (91%), Gaps = 1/158 (0%)

Query: 59  LSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118
           LS+CIASRGGNIL  DVFVPE KNVFYSRSEFIFDP+KWPR QMDEDF ++SK F A++S
Sbjct: 1   LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIFDPVKWPRAQMDEDFQEISKHFKALKS 60

Query: 119 VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE 178
           VVRVP +DPKYK+AVLASKQ+HCL+D L+ WQ+G+LPV+ITCVISNH+RGPN+HV+RFLE
Sbjct: 61  VVRVPGLDPKYKIAVLASKQDHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLE 120

Query: 179 RHGIPYHYLC-AKENEREEELLELVQNTDFLVLARYMQ 215
           RHGIPYHYL   KEN+RE+E+LELV+ TDFLVLARYMQ
Sbjct: 121 RHGIPYHYLPTTKENKREDEILELVKGTDFLVLARYMQ 158

Length = 268

>gnl|CDD|235676 PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed

 Score =  156 bits (396), Expect = 4e-46
 Identities = 72/172 (41%), Positives = 98/172 (56%), Gaps = 13/172 (7%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CPD  GIVA +S  +   GGNI+ AD FV  +   F+ R EF  D + +  E +  DF  
Sbjct: 13  CPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAA 72

Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
           L++ F       R+ D   + +V +L SK++HCL D L+ W+ G+LPVEI  VISNHD  
Sbjct: 73  LAEEFEM---DWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHD-- 127

Query: 169 PNSHVIRFLERHGIPYHYLCA-KEN--EREEELLELVQ--NTDFLVLARYMQ 215
               +   +ER GIP+H++   KE   E E  LLEL+     D +VLARYMQ
Sbjct: 128 ---DLRSLVERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLARYMQ 176

Length = 286

>gnl|CDD|223859 COG0788, PurU, Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

 Score =  151 bits (383), Expect = 3e-44
 Identities = 71/184 (38%), Positives = 99/184 (53%), Gaps = 13/184 (7%)

Query: 37  SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIK 96
           S      I    CPD+ GIVA +S  +A  G NI+ +D F   +   F+ R EF  +   
Sbjct: 2   SNEPDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGP 61

Query: 97  WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPV 156
             RE +   F  L++ F       R+ D   + ++A+L SK++HCL D LY W+ G+LP 
Sbjct: 62  LDREALRAAFAPLAEEFGMD---WRLHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPA 118

Query: 157 EITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLA 211
           EI  VISNHD      +   +ER  IP+H++   KEN  E E  LLEL++    D +VLA
Sbjct: 119 EIVAVISNHD-----DLRPLVERFDIPFHHIPVTKENKAEAEARLLELLEEYGADLVVLA 173

Query: 212 RYMQ 215
           RYMQ
Sbjct: 174 RYMQ 177

Length = 287

>gnl|CDD|233074 TIGR00655, PurU, formyltetrahydrofolate deformylase

 Score =  126 bits (318), Expect = 8e-35
 Identities = 63/172 (36%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CPD+ G+VA +S  IA  G NI++ D     +   F+ R EF  +  +     +   F  
Sbjct: 7   CPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS 66

Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
                  M     +   D   +VA+L SK++HCL D L+ W  G+L  EI  VISNH+  
Sbjct: 67  ALAEKFEM--TWELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHEDL 124

Query: 169 PNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLARYMQ 215
             S V RF    GIP+HY+   K+N  E E+  LEL++    D +VLA+YMQ
Sbjct: 125 -RSLVERF----GIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKYMQ 171

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 280

>gnl|CDD|187717 cd08648, FMT_core_Formyl-FH4-Hydrolase_C, Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain

 Score =  119 bits (300), Expect = 6e-33
 Identities = 39/92 (42%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL- 187
            +VA+  SK++HCL D L+ W+EG+LP EI  VISNH            ER GIP+H++ 
Sbjct: 1   KRVAIFVSKEDHCLYDLLHRWREGELPCEIPLVISNHPDL-----RPLAERFGIPFHHIP 55

Query: 188 ----CAKENEREEELLELVQNTDFLVLARYMQ 215
                  E E E+  L      D +VLARYMQ
Sbjct: 56  VTKDTKAEAEAEQLELLEEYGVDLVVLARYMQ 87

Formyl-FH4 Hydrolase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formate is the substrate of phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase has been proposed to regulate the balance of FH4 and C1-FH4 in the cell. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. This domain belongs to the formyltransferase (FMT) domain superfamily. Members of this family have an N-terminal ACT domain, which is commonly involved in specifically bind an amino acid or other small ligand leading to regulation of the enzyme. The N-terminal of this protein family may be responsible for the binding of the regulators methionine and glycine. Length = 196

>gnl|CDD|237266 PRK13011, PRK13011, formyltetrahydrofolate deformylase; Reviewed

 Score =  109 bits (274), Expect = 2e-28
 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 20/176 (11%)

Query: 48  HCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107
            CP   GIVA ++  +A  G  I     F       F+ R EF  +      E +DED  
Sbjct: 13  SCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE------EGLDEDAL 66

Query: 108 K--LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
           +   + +         + D   + KV ++ SK +HCL D LY W+ G+LP++I  V+SNH
Sbjct: 67  RAGFAPIAARFGMQWELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNH 126

Query: 166 -DRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLARYMQ 215
            D  P          HGIP+H+     +   ++E ++L++V+    + +VLARYMQ
Sbjct: 127 PDLEP------LAAWHGIPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLARYMQ 176

Length = 286

>gnl|CDD|139334 PRK13010, purU, formyltetrahydrofolate deformylase; Reviewed

 Score =  101 bits (253), Expect = 3e-25
 Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 16/174 (9%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIK-WPREQMDEDFF 107
           CP   GIVA +S  +A +G  I+    F  ++   F+ R  F     +    +   ++F 
Sbjct: 16  CPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQ 75

Query: 108 KLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH-D 166
            +++ F+   ++        + KV ++ SK +HCL D LY W+ G+L ++I  +ISNH D
Sbjct: 76  PVAEKFDMQWAIHPDGQ---RPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHPD 132

Query: 167 RGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLARYMQ 215
             P +        H IP+H+L    +   ++E ++L+L++    + +VLARYMQ
Sbjct: 133 LQPLAVQ------HDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARYMQ 180

Length = 289

>gnl|CDD|153147 cd04875, ACT_F4HF-DF, N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

 Score = 76.1 bits (188), Expect = 5e-18
 Identities = 25/72 (34%), Positives = 36/72 (50%)

Query: 44  IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMD 103
           I    CPD  GIVA +S  +A  GGNI+ +D FV      F+ R EF  +     RE ++
Sbjct: 1   ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALE 60

Query: 104 EDFFKLSKMFNA 115
             F  ++  F+ 
Sbjct: 61  AAFAPVAAEFDM 72

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 74

>gnl|CDD|187714 cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART)

 Score = 56.6 bits (138), Expect = 7e-10
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 19/96 (19%)

Query: 130 KVAVLASK-----QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184
           ++AVLAS      Q   L+D +   + GKL  EI  VISN+   P+++ +   ++ GIP 
Sbjct: 1   RIAVLASGSGSNLQA--LIDAI---KSGKLNAEIVLVISNN---PDAYGLERAKKAGIPT 52

Query: 185 HYL----CAKENEREEELLELVQ--NTDFLVLARYM 214
             +         E +E LLEL++    D +VLA +M
Sbjct: 53  FVINRKDFPSREEFDEALLELLKEYKVDLIVLAGFM 88

Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities. Length = 183

>gnl|CDD|223376 COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 25/99 (25%)

Query: 130 KVAVLASKQ--------EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG 181
           K+AVLAS          +          + GKL  EI  VIS+     +++ +    + G
Sbjct: 2   KIAVLASGNGSNLQAIIDAI--------KGGKLDAEIVAVISDK---ADAYALERAAKAG 50

Query: 182 IPYHYLCAKENE----REEELLELVQN--TDFLVLARYM 214
           IP   L  KE       +  L+E +     D +VLA YM
Sbjct: 51  IPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAGYM 89

Length = 200

>gnl|CDD|144222 pfam00551, Formyl_trans_N, Formyl transferase

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189
           K+AVL S     L   L   ++G   VEI  V++N D+      +   E+ GIP   +  
Sbjct: 2   KIAVLISGTGSNLQALLDALRKGGHEVEIVAVVTNKDKA---AGLERAEQAGIPVE-VFE 57

Query: 190 KEN-----EREEELLELVQ--NTDFLVLARYMQPVP 218
            +N     + + EL + +     D +VLA YM+ +P
Sbjct: 58  HKNFTPRSQFDSELADSLAALAPDLIVLAGYMRILP 93

This family includes the following members. Glycinamide ribonucleotide transformylase catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA contains a related domain of unknown function. PRTH_PORGI contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function. Length = 181

>gnl|CDD|235544 PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed

 Score = 45.1 bits (108), Expect = 9e-06
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 19/96 (19%)

Query: 130 KVAVLASK-----QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184
           ++ VLAS      Q   ++D       G+LP EI  VIS+    P+++ +   E  GIP 
Sbjct: 3   RIVVLASGNGSNLQ--AIID---ACAAGQLPAEIVAVISDR---PDAYGLERAEAAGIPT 54

Query: 185 HYLCAKENE-REE---ELLELVQ--NTDFLVLARYM 214
             L  K+   RE     L+E +     D +VLA +M
Sbjct: 55  FVLDHKDFPSREAFDAALVEALDAYQPDLVVLAGFM 90

Length = 200

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 9/40 (22%), Positives = 15/40 (37%)

Query: 46 VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFY 85
              PD  G++AK+   +A  G NI + +           
Sbjct: 2  TVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEAD 41

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|187712 cd08369, FMT_core, Formyltransferase, catalytic core domain

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 5/88 (5%)

Query: 131 VAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 190
           + +L S   +     L      +   EI  V+++ D    +  +      G  Y      
Sbjct: 1   IVILGSG--NIGQRVLKALLSKEG-HEIVGVVTHPDSPRGTAQLSLELVGGKVYLDSNIN 57

Query: 191 ENEREEELLELVQNTDFLVLARYMQPVP 218
             E  E L E     D +V   + Q +P
Sbjct: 58  TPELLELLKEF--APDLIVSINFRQIIP 83

Formyltransferase, catalytic core domain. The proteins of this superfamily contain a formyltransferase domain that hydrolyzes the removal of a formyl group from its substrate as part of a multistep transfer mechanism, and this alignment model represents the catalytic core of the formyltransferase domain. This family includes the following known members; Glycinamide Ribonucleotide Transformylase (GART), Formyl-FH4 Hydrolase, Methionyl-tRNA Formyltransferase, ArnA, and 10-Formyltetrahydrofolate Dehydrogenase (FDH). Glycinamide Ribonucleotide Transformylase (GART) catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyl-FH4 Hydrolase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Methionyl-tRNA Formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA, which plays important role in translation initiation. ArnA is required for the modification of lipid A with 4-amino-4-deoxy-l-arabinose (Ara4N) that leads to resistance to cationic antimicrobial peptides (CAMPs) and clinical antimicrobials such as polymyxin. 10-formyltetrahydrofolate dehydrogenase (FDH) catalyzes the conversion of 10-formyltetrahydrofolate, a precursor for nucleotide biosynthesis, to tetrahydrofolate. Members of this family are multidomain proteins. The formyltransferase domain is located at the N-terminus of FDH, Methionyl-tRNA Formyltransferase and ArnA, and at the C-terminus of Formyl-FH4 Hydrolase. Prokaryotic Glycinamide Ribonucleotide Transformylase (GART) is a single domain protein while eukaryotic GART is a trifunctional protein that catalyzes the second, third and fifth steps in de novo purine biosynthesis. Length = 173

>gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189
           ++ VL S     L   +   +EGK+P  +  VISN    P+++ +    + GIP   L  
Sbjct: 2   RIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNK---PDAYGLERAAQAGIPTFVLSL 58

Query: 190 KE----NEREEELLELVQ--NTDFLVLARYM 214
           K+       ++ ++E ++    D +VLA +M
Sbjct: 59  KDFPSREAFDQAIIEELRAHEVDLVVLAGFM 89

This model describes phosphoribosylglycinamide formyltransferase (GAR transformylase), one of several proteins in formyl_transf (Pfam family pfam00551). This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. PurT, a different GAR transformylase, uses ATP and formate rather than formyl tetrahydrofolate. Experimental proof includes complementation of E. coli purN mutants by orthologs from vertebrates (where it is a domain of a multifunctional protein), Bacillus subtilis, and Arabidopsis. No archaeal example was detected. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	281
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	100.0
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	100.0
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	100.0
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	100.0
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	100.0
PLN02828	268	formyltetrahydrofolate deformylase	100.0
COG0299	200	PurN Folate-dependent phosphoribosylglycinamide fo	100.0
PLN02331	207	phosphoribosylglycinamide formyltransferase	99.98
KOG3076	206	consensus 5'-phosphoribosylglycinamide formyltrans	99.96
TIGR00639	190	PurN phosphoribosylglycinamide formyltransferase,	99.95
PRK05647	200	purN phosphoribosylglycinamide formyltransferase;	99.94
PLN02285	334	methionyl-tRNA formyltransferase	99.89
PF00551	181	Formyl_trans_N: Formyl transferase; InterPro: IPR0	99.88
COG0223	307	Fmt Methionyl-tRNA formyltransferase [Translation,	99.83
PRK06988	312	putative formyltransferase; Provisional	99.78
TIGR00460	313	fmt methionyl-tRNA formyltransferase. The top-scor	99.75
PRK00005	309	fmt methionyl-tRNA formyltransferase; Reviewed	99.75
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	99.73
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	99.7
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	99.68
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	99.66
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	99.65
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	99.61
COG3830	90	ACT domain-containing protein [Signal transduction	99.61
PRK00194	90	hypothetical protein; Validated	99.59
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	99.58
PRK07579	245	hypothetical protein; Provisional	99.57
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.52
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.38
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.21
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	98.94
KOG3082	338	consensus Methionyl-tRNA formyltransferase [Transl	98.83
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.78
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	98.51
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	98.39
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	98.37
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	98.32
PRK08577	136	hypothetical protein; Provisional	98.25
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.05
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.99
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.98
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	97.96
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.93
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	97.92
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	97.92
PRK04435	147	hypothetical protein; Provisional	97.91
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	97.82
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.8
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	97.8
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	97.79
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	97.75
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	97.74
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	97.69
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	97.67
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	97.6
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	97.6
PRK03381	774	PII uridylyl-transferase; Provisional	97.59
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	97.56
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	97.55
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.54
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	97.49
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	97.49
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	97.46
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	97.46
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	97.46
COG1707	218	ACT domain-containing protein [General function pr	97.42
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	97.38
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.36
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	97.35
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	97.31
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	97.3
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	97.28
KOG2452	881	consensus Formyltetrahydrofolate dehydrogenase [Nu	97.27
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.27
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	97.15
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.12
cd02116	60	ACT ACT domains are commonly involved in specifica	97.12
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	97.11
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	97.02
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	96.81
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	96.74
PRK07334	403	threonine dehydratase; Provisional	96.72
PRK05092	931	PII uridylyl-transferase; Provisional	96.47
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	96.33
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.31
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	96.29
COG4492	150	PheB ACT domain-containing protein [General functi	96.14
PRK03381	774	PII uridylyl-transferase; Provisional	96.03
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	95.99
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	95.94
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	95.85
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	95.81
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	95.78
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	95.77
PRK05092	931	PII uridylyl-transferase; Provisional	95.48
PRK05007	884	PII uridylyl-transferase; Provisional	95.46
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	95.39
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	95.38
PRK04374	869	PII uridylyl-transferase; Provisional	95.36
PRK03059	856	PII uridylyl-transferase; Provisional	95.04
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	94.91
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	94.88
PRK01759	854	glnD PII uridylyl-transferase; Provisional	94.85
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	94.84
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	94.82
PRK08818	370	prephenate dehydrogenase; Provisional	94.61
PRK08198	404	threonine dehydratase; Provisional	94.59
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	94.52
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	94.49
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	94.41
PRK11899	279	prephenate dehydratase; Provisional	94.13
COG4747	142	ACT domain-containing protein [General function pr	94.05
PRK06382	406	threonine dehydratase; Provisional	93.92
PRK00275	895	glnD PII uridylyl-transferase; Provisional	93.85
PRK05007	884	PII uridylyl-transferase; Provisional	93.69
COG2102	223	Predicted ATPases of PP-loop superfamily [General	93.64
PRK06349	426	homoserine dehydrogenase; Provisional	93.47
PRK01759	854	glnD PII uridylyl-transferase; Provisional	93.46
PRK06545	359	prephenate dehydrogenase; Validated	93.25
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	93.11
cd04892	65	ACT_AK-like_2 ACT domains C-terminal to the cataly	93.05
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	93.0
COG1570	440	XseA Exonuclease VII, large subunit [DNA replicati	92.86
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	92.84
PRK00275	895	glnD PII uridylyl-transferase; Provisional	92.8
COG2150	167	Predicted regulator of amino acid metabolism, cont	92.69
PRK04374	869	PII uridylyl-transferase; Provisional	92.64
PRK03059	856	PII uridylyl-transferase; Provisional	92.56
PRK08300	302	acetaldehyde dehydrogenase; Validated	92.52
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	92.39
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	92.36
TIGR00289	222	conserved hypothetical protein TIGR00289. Homologo	92.35
cd01994	194	Alpha_ANH_like_IV This is a subfamily of Adenine n	92.0
TIGR00290	223	MJ0570_dom MJ0570-related uncharacterized domain.	91.89
PRK08526	403	threonine dehydratase; Provisional	91.87
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	91.87
COG3978	86	Acetolactate synthase (isozyme II), small (regulat	91.67
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	91.44
cd04924	66	ACT_AK-Arch_2 ACT domains of a monofunctional aspa	91.38
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	91.35
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	91.24
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	90.97
PRK10696	258	tRNA 2-thiocytidine biosynthesis protein TtcA; Pro	90.65
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	90.61
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	90.09
PF01902	218	ATP_bind_4: ATP-binding region; InterPro: IPR00276	89.79
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	89.28
PF01171	182	ATP_bind_3: PP-loop family; InterPro: IPR011063 Th	89.26
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	88.9
COG2061	170	ACT-domain-containing protein, predicted allosteri	88.75
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	88.44
COG3453	130	Uncharacterized protein conserved in bacteria [Fun	88.17
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	88.17
COG4569	310	MhpF Acetaldehyde dehydrogenase (acetylating) [Sec	88.1
cd04933	78	ACT_AK1-AT_1 ACT domains located C-terminal to the	88.06
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	87.96
PRK08639	420	threonine dehydratase; Validated	87.92
TIGR02079	409	THD1 threonine dehydratase. This model represents	87.85
cd04916	66	ACT_AKiii-YclM-BS_2 ACT domains located C-terminal	87.85
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	87.44
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	87.36
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	87.14
PLN02317	382	arogenate dehydratase	87.0
cd04868	60	ACT_AK-like ACT domains C-terminal to the catalyti	87.0
cd04918	65	ACT_AK1-AT_2 ACT domains located C-terminal to the	86.9
PLN02696	454	1-deoxy-D-xylulose-5-phosphate reductoisomerase	86.67
cd04936	63	ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-	86.3
PRK11898	283	prephenate dehydratase; Provisional	84.26
cd04915	66	ACT_AK-Ectoine_2 ACT domains located C-terminal to	84.09
TIGR02432	189	lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t	83.77
cd04923	63	ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-	83.6
TIGR00243	389	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	83.48
PRK00907	92	hypothetical protein; Provisional	82.88
COG3283	511	TyrR Transcriptional regulator of aromatic amino a	82.42
PRK06291	465	aspartate kinase; Provisional	82.32
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	82.22
cd04921	80	ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunc	81.91
cd04934	73	ACT_AK-Hom3_1 CT domains located C-terminal to the	81.78
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	81.05
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	80.67
COG0673	342	MviM Predicted dehydrogenases and related proteins	80.67
COG3603	128	Uncharacterized conserved protein [Function unknow	80.31
PRK08841	392	aspartate kinase; Validated	80.29
PRK06635	404	aspartate kinase; Reviewed	80.04

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=100.00  E-value=1.6e-54  Score=391.81  Aligned_cols=207  Identities=35%  Similarity=0.503  Sum_probs=190.8

Q ss_pred             CCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhccc
Q 023530           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (281)
Q Consensus        37 ~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~  116 (281)
                      +..++.++||+.|||++|||++||++|+++||||++.+|+.++.+|+||||+++.......+.++|+++|..++++|+|+
T Consensus         2 ~~~~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m~   81 (287)
T COG0788           2 SNEPDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGMD   81 (287)
T ss_pred             CCCccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCce
Confidence            44557899999999999999999999999999999999998888999999999998875588999999999999999987


Q ss_pred             ceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCCh-
Q 023530          117 RSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENER-  194 (281)
Q Consensus       117 ~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~~~-  194 (281)
                         |++.+++.++||+||+|+.+|||.+||.+|+.|+|+++|++|||||+|     ....|+.+|||++++| ++.++. 
T Consensus        82 ---~~~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~d-----l~~~v~~~~IPfhhip~~~~~k~e  153 (287)
T COG0788          82 ---WRLHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDD-----LRPLVERFDIPFHHIPVTKENKAE  153 (287)
T ss_pred             ---eEEeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHH-----HHHHHHHcCCCeeeccCCCCcchH
Confidence               677889999999999999999999999999999999999999999975     4789999999999999 776554 


Q ss_pred             -HHHHHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcC
Q 023530          195 -EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTD  255 (281)
Q Consensus       195 -e~~l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d  255 (281)
                       |++++++++  ++|+||||+|||||||+||++|+|+|||   |+||+|.||    .|-|+|-..|.
T Consensus       154 ~E~~~~~ll~~~~~DlvVLARYMqILS~d~~~~~~g~iINIHHSFLPaF~GA----~PY~QA~eRGV  216 (287)
T COG0788         154 AEARLLELLEEYGADLVVLARYMQILSPDFVERFPGKIINIHHSFLPAFIGA----NPYHQAYERGV  216 (287)
T ss_pred             HHHHHHHHHHHhCCCEEeehhhHhhCCHHHHHhccCcEEEecccccccCCCC----ChHHHHHhcCC
Confidence             577999998  8999999999999999999999999999   999999998    78888876553

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=100.00  E-value=6.5e-53  Score=390.48  Aligned_cols=207  Identities=32%  Similarity=0.519  Sum_probs=186.5

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH-Hhhhhcccceeee
Q 023530           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK-LSKMFNAMRSVVR  121 (281)
Q Consensus        43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~-la~~l~l~~~~~~  121 (281)
                      ++||++|||||||||+||++|+++|+||+|++|+++..+|.|+||++++.|+...+.++|+++|++ ++++++|+   |+
T Consensus         1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~~~~l~---i~   77 (280)
T TIGR00655         1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEKFEMT---WE   77 (280)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhCCE---EE
Confidence            479999999999999999999999999999999998778999999999998644789999999999 99999997   56


Q ss_pred             ecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCC-CCCC--hHHHH
Q 023530          122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KENE--REEEL  198 (281)
Q Consensus       122 ~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~-k~~~--~e~~l  198 (281)
                      +.+.++++|||||+||+||||++|+++++.|+++++|++|||||   +++.  .+|+++|||+++++. +.++  .|+++
T Consensus        78 l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~---~~~~--~~A~~~gIp~~~~~~~~~~~~~~e~~~  152 (280)
T TIGR00655        78 LILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNH---EDLR--SLVERFGIPFHYIPATKDNRVEHEKRQ  152 (280)
T ss_pred             EecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcC---hhHH--HHHHHhCCCEEEcCCCCcchhhhHHHH
Confidence            78888999999999999999999999999999999999999999   4554  469999999999984 2222  35678


Q ss_pred             HHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcC--CCccee
Q 023530          199 LELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTD--KGCLCS  261 (281)
Q Consensus       199 ~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d--~g~~~~  261 (281)
                      .+.|+  ++|+||||||||||+++|++.|++||||   ||||+|||+    .+++||+.+|+  +|||+-
T Consensus       153 ~~~l~~~~~Dlivlagym~il~~~~l~~~~~~iINiHpSLLP~f~G~----~p~~~ai~~G~k~tG~TvH  218 (280)
T TIGR00655       153 LELLKQYQVDLVVLAKYMQILSPDFVKRYPNKIINIHHSFLPAFIGA----NPYQRAYERGVKIIGATAH  218 (280)
T ss_pred             HHHHHHhCCCEEEEeCchhhCCHHHHhhccCCEEEecCCcCCCCCCc----CHHHHHHHcCCCeEEEEEE
Confidence            88887  8999999999999999999999999999   999999996    78999998886  566653

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=100.00  E-value=3.4e-52  Score=387.17  Aligned_cols=208  Identities=25%  Similarity=0.424  Sum_probs=186.0

Q ss_pred             cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE--eCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI--FDPIKWPREQMDEDFFKLSKMFNAMR  117 (281)
Q Consensus        40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~--~p~~~~~~~~L~~~L~~la~~l~l~~  117 (281)
                      +.+++|||.|+|||||||+||++|+++|+||+|++|+++...+.||||+++.  .|. ..+.++|+++|++++++++++ 
T Consensus         7 m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~-~~~~~~l~~~l~~l~~~l~l~-   84 (289)
T PRK13010          7 SPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAE-AASVDTFRQEFQPVAEKFDMQ-   84 (289)
T ss_pred             ccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCC-CCCHHHHHHHHHHHHHHhCCe-
Confidence            4679999999999999999999999999999999999766678999999988  445 678999999999999999998 


Q ss_pred             eeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCC-C--Ch
Q 023530          118 SVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N--ER  194 (281)
Q Consensus       118 ~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~-~--~~  194 (281)
                        |++.+.++++|||||+||+||||++|++++++|+++++|++|||||   +++  .++|+++|||+++++.+. +  ..
T Consensus        85 --~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~---~~~--~~~A~~~gIp~~~~~~~~~~~~~~  157 (289)
T PRK13010         85 --WAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNH---PDL--QPLAVQHDIPFHHLPVTPDTKAQQ  157 (289)
T ss_pred             --EEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECC---hhH--HHHHHHcCCCEEEeCCCcccccch
Confidence              5567788889999999999999999999999999999999999999   444  699999999999998332 2  23


Q ss_pred             HHHHHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcC--CCcce
Q 023530          195 EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTD--KGCLC  260 (281)
Q Consensus       195 e~~l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d--~g~~~  260 (281)
                      |.++.+.|+  ++|+||||||||||+++|++.|++||||   ||||+|||+    .+++||+.+|+  +|||+
T Consensus       158 ~~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~~iiNiHpSlLP~f~G~----~~~~~ai~~G~k~tG~Tv  226 (289)
T PRK13010        158 EAQILDLIETSGAELVVLARYMQVLSDDLSRKLSGRAINIHHSFLPGFKGA----RPYHQAHARGVKLIGATA  226 (289)
T ss_pred             HHHHHHHHHHhCCCEEEEehhhhhCCHHHHhhccCCceeeCcccCCCCCCC----CHHHHHHHcCCCeEEEEE
Confidence            567888888  8999999999999999999999999999   999999997    78889998886  45554

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=100.00  E-value=9.2e-51  Score=377.18  Aligned_cols=212  Identities=26%  Similarity=0.429  Sum_probs=188.6

Q ss_pred             CCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhccc
Q 023530           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (281)
Q Consensus        37 ~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~  116 (281)
                      +.-++++++||+|+||||||++||++|+++|+||+|++|+++.+.++|+|++++++|+ +.+.++|+++|+++|++++++
T Consensus         2 ~~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~-~~~~~~L~~~L~~l~~~l~l~   80 (286)
T PRK13011          2 SRRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEE-GLDEDALRAGFAPIAARFGMQ   80 (286)
T ss_pred             CCCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCC-CCCHHHHHHHHHHHHHHhCcE
Confidence            3345689999999999999999999999999999999999877889999999999997 788999999999999999998


Q ss_pred             ceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCC---
Q 023530          117 RSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE---  193 (281)
Q Consensus       117 ~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~---  193 (281)
                         |++.+..+++|||||+||+|+||++|+++++.|+++++|++||||+   +++.  .+|+++|||+++++.+..+   
T Consensus        81 ---i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~---~~~~--~lA~~~gIp~~~~~~~~~~~~~  152 (286)
T PRK13011         81 ---WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNH---PDLE--PLAAWHGIPFHHFPITPDTKPQ  152 (286)
T ss_pred             ---EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECC---ccHH--HHHHHhCCCEEEeCCCcCchhh
Confidence               4567777889999999999999999999999999999999999999   4444  4599999999998732222   


Q ss_pred             hHHHHHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcC--CCccee
Q 023530          194 REEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTD--KGCLCS  261 (281)
Q Consensus       194 ~e~~l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d--~g~~~~  261 (281)
                      +|.++.+.|+  ++|+||||||||||+++|++.|+++|||   ||||+|||+    .+++||+.+|+  +|||+-
T Consensus       153 ~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpSLLP~~rG~----~~~~~ai~~G~~~tG~TvH  223 (286)
T PRK13011        153 QEAQVLDVVEESGAELVVLARYMQVLSPELCRKLAGRAINIHHSFLPGFKGA----KPYHQAYERGVKLIGATAH  223 (286)
T ss_pred             hHHHHHHHHHHhCcCEEEEeChhhhCCHHHHhhccCCeEEeccccCCCCCCC----cHHHHHHHCCCCeEEEEEE
Confidence            3556788887  8999999999999999999999999999   999999997    89999999987  466553

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=100.00  E-value=7.9e-50  Score=370.97  Aligned_cols=208  Identities=35%  Similarity=0.538  Sum_probs=186.0

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEe-CCCCCCHHHHHHHHHHHhhhhccccee
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF-DPIKWPREQMDEDFFKLSKMFNAMRSV  119 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~-p~~~~~~~~L~~~L~~la~~l~l~~~~  119 (281)
                      +++++|++|+||||||++||++|+++||||+|++|++.+.+|.|+|++++++ |. +.+.++|+++|++++++++++   
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~-~~~~~~L~~~L~~l~~~l~l~---   80 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGL-IFNLETLRADFAALAEEFEMD---   80 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCC-CCCHHHHHHHHHHHHHHhCCE---
Confidence            5799999999999999999999999999999999998556889999999999 44 567999999999999999998   


Q ss_pred             eeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCC-CC--ChHH
Q 023530          120 VRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-EN--EREE  196 (281)
Q Consensus       120 ~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k-~~--~~e~  196 (281)
                      +.+.+..+++|||||+||+||||++|++++++|+++++|++|+||+   ++++  .+|+++|||+++++.+ .+  ++|.
T Consensus        81 i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~---~~~~--~lA~~~gIp~~~~~~~~~~~~~~~~  155 (286)
T PRK06027         81 WRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNH---DDLR--SLVERFGIPFHHVPVTKETKAEAEA  155 (286)
T ss_pred             EEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcC---hhHH--HHHHHhCCCEEEeccCccccchhHH
Confidence            5678888999999999999999999999999999999999999998   4454  4599999999998843 22  2456


Q ss_pred             HHHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcC--CCccee
Q 023530          197 ELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTD--KGCLCS  261 (281)
Q Consensus       197 ~l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d--~g~~~~  261 (281)
                      ++.+.|+  ++|+||||||||||+++|++.|++||||   ||||+|||+    .+++||+.+|+  +|||+-
T Consensus       156 ~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpSLLP~yrG~----~~~~~ai~~G~~~tG~TiH  223 (286)
T PRK06027        156 RLLELIDEYQPDLVVLARYMQILSPDFVARFPGRIINIHHSFLPAFKGA----KPYHQAYERGVKLIGATAH  223 (286)
T ss_pred             HHHHHHHHhCCCEEEEecchhhcCHHHHhhccCCceecCcccCCCCCCC----CHHHHHHHCCCCeEEEEEE
Confidence            7888888  8999999999999999999999999999   999999997    78999999987  466553

>PLN02828 formyltetrahydrofolate deformylase

Probab=100.00  E-value=3.3e-49  Score=362.95  Aligned_cols=199  Identities=64%  Similarity=1.046  Sum_probs=180.8

Q ss_pred             HHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCC
Q 023530           59 LSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQ  138 (281)
Q Consensus        59 VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~  138 (281)
                      ||++|+++|+||++++|++++.+|+||||++++.+....+.++|+++|.+++++++|+||+|++.++++++|||||+||+
T Consensus         1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riavlvSg~   80 (268)
T PLN02828          1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIFDPVKWPRAQMDEDFQEISKHFKALKSVVRVPGLDPKYKIAVLASKQ   80 (268)
T ss_pred             CcHHHHhCCCCEeEcccccCCCCCeeEEEEEEEeCCCCCCHHHHHHHHHHHHHhcCCcceEEEEccCCCCcEEEEEEcCC
Confidence            58999999999999999999999999999999976434678999999999999999998889999999999999999999


Q ss_pred             hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCChHHHHHHHHhCCCEEEEecccccC
Q 023530          139 EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENEREEELLELVQNTDFLVLARYMQPV  217 (281)
Q Consensus       139 GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~~~e~~l~~~L~~~DlIVLAgYMrIL  217 (281)
                      ||||++|++++++|+++++|++|||||++.++++++++|+++|||+++++ .+.++.|+++.+.++++|+||||||||||
T Consensus        81 g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~DliVLAgym~IL  160 (268)
T PLN02828         81 DHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFLVLARYMQIL  160 (268)
T ss_pred             ChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEEEEeeehHhC
Confidence            99999999999999999999999999865456789999999999999988 33344566788888899999999999999


Q ss_pred             ChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Cccee
Q 023530          218 PLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLCS  261 (281)
Q Consensus       218 s~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~~  261 (281)
                      |++|++.|++||||   ||||+|+|+    .|+|||+..|++  |||+-
T Consensus       161 ~~~~l~~~~~riINIHpSlLP~f~Ga----~p~~~Ai~~Gvk~tG~TvH  205 (268)
T PLN02828        161 SGNFLKGYGKDIINIHHGLLPSFKGG----NPSKQAFDAGVKLIGATSH  205 (268)
T ss_pred             CHHHHhhccCCEEEecCccCCCCCCC----cHHHHHHHcCCCeEEEEEE
Confidence            99999999999999   999999997    899999999874  66653

>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]

Probab=100.00  E-value=6.2e-35  Score=255.09  Aligned_cols=125  Identities=28%  Similarity=0.341  Sum_probs=113.3

Q ss_pred             eeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCC-C---hHHHHHHHHh-
Q 023530          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN-E---REEELLELVQ-  203 (281)
Q Consensus       129 ~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~-~---~e~~l~~~L~-  203 (281)
                      +||+||+||+|||||+|+++++.|.++++|++||||+   ++|+++++|+++|||++++++|.. +   +|+++.+.|+ 
T Consensus         1 ~ki~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~---~~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~   77 (200)
T COG0299           1 KKIAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDK---ADAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDE   77 (200)
T ss_pred             CeEEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCC---CCCHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999999999   789999999999999999985542 2   4678999998 


Q ss_pred             -CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHh-cC--CCccee
Q 023530          204 -NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMIL-TD--KGCLCS  261 (281)
Q Consensus       204 -~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~-~d--~g~~~~  261 (281)
                       ++|+||||||||||++.|+++|++||||   ||||+|+|     .++|+++++ |+  +|||+-
T Consensus        78 ~~~dlvvLAGyMrIL~~~fl~~~~grIlNIHPSLLP~f~G-----~h~~~~A~~aG~k~sG~TVH  137 (200)
T COG0299          78 YGPDLVVLAGYMRILGPEFLSRFEGRILNIHPSLLPAFPG-----LHAHEQALEAGVKVSGCTVH  137 (200)
T ss_pred             cCCCEEEEcchHHHcCHHHHHHhhcceEecCcccccCCCC-----chHHHHHHHcCCCccCcEEE
Confidence             8999999999999999999999999999   99999999     899998885 54  677653

>PLN02331 phosphoribosylglycinamide formyltransferase

Probab=99.98  E-value=8.3e-32  Score=239.82  Aligned_cols=128  Identities=20%  Similarity=0.333  Sum_probs=114.8

Q ss_pred             eEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCC----ChHHHHHHHHh--
Q 023530          130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN----EREEELLELVQ--  203 (281)
Q Consensus       130 rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~----~~e~~l~~~L~--  203 (281)
                      ||+||+||+||||++|++++++|+++++|++||||+   ++|+++++|+++|||+++++.+..    ..++++.+.|+  
T Consensus         1 ki~vl~Sg~Gsn~~al~~~~~~~~l~~~i~~visn~---~~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~   77 (207)
T PLN02331          1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNK---PGCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGA   77 (207)
T ss_pred             CEEEEEeCCChhHHHHHHHHHcCCCCeEEEEEEEeC---CCChHHHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhc
Confidence            699999999999999999999999999999999999   789999999999999999874321    12567888887  


Q ss_pred             CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHH-hcC--CCcce
Q 023530          204 NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMI-LTD--KGCLC  260 (281)
Q Consensus       204 ~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l-~~d--~g~~~  260 (281)
                      ++|+||+|||||||+++|++.|+++|||   ||||+|||+||||+|+||+++ +|+  +|||+
T Consensus        78 ~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSLLP~yrG~g~~~~~v~~a~i~~g~~~tG~Tv  140 (207)
T PLN02331         78 GVDFVLLAGYLKLIPVELVRAYPRSILNIHPALLPAFGGKGYYGIKVHKAVIASGARYSGPTV  140 (207)
T ss_pred             CCCEEEEeCcchhCCHHHHhhCCCCEEEEeCccccCCCCCCcccchHHHHHHHcCCCeEEEEE
Confidence            8999999999999999999999999999   999999999999999999988 575  44444

>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]

Probab=99.96  E-value=2.1e-29  Score=218.30  Aligned_cols=127  Identities=24%  Similarity=0.284  Sum_probs=109.2

Q ss_pred             CCCeeEEEEeeCChhHHHHHHHhhhcCCC--CeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCC-C---ChHHHHH
Q 023530          126 DPKYKVAVLASKQEHCLVDFLYGWQEGKL--PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N---EREEELL  199 (281)
Q Consensus       126 ~~~~rIavl~Sg~GsnL~aLl~~~~~g~l--~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~-~---~~e~~l~  199 (281)
                      .++.|++||+||.|+||++|+++.+.|.+  +++|+.||||+   .+++++++|+++|||+.++|++. .   +++.++.
T Consensus         4 ~~r~rvavliSGtGsNlqaLid~~r~~~l~~~a~VvlviSnk---~~~~GL~rA~~~gIPt~vip~k~~a~R~~~d~eL~   80 (206)
T KOG3076|consen    4 WRRARVAVLISGTGSNLQALIDATRDGSLGPNADVVLVISNK---KGVYGLERAADAGIPTLVIPHKRFASREKYDNELA   80 (206)
T ss_pred             ccceeEEEEEecCchhHHHHHHhhcCCCcCCCceEEEEEecc---ccchhhhHHHHCCCCEEEeccccccccccCcHHHH
Confidence            45789999999999999999999999998  79999999998   78999999999999999999532 1   2356787


Q ss_pred             HHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHh-c--CCCcce
Q 023530          200 ELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMIL-T--DKGCLC  260 (281)
Q Consensus       200 ~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~-~--d~g~~~  260 (281)
                      +.|.  ++|+|||||||||||++|++.|+.+|||   ||||+|+|     .++|+++++ |  -+||++
T Consensus        81 ~~l~e~~~d~v~lAG~M~iLs~~fl~~~~~~iiNIHPaLlpaFkG-----~~a~k~Aleagv~~~Gctv  144 (206)
T KOG3076|consen   81 EVLLELGTDLVCLAGYMRILSGEFLSQLPKRIINIHPALLPAFKG-----LHAIKQALEAGVKLSGCTV  144 (206)
T ss_pred             HHHHHhCCCEEEehhhHHHcCHHHHhhcccceEecccccccccCC-----chHHHHHHHhccccccceE
Confidence            7776  9999999999999999999999999999   99999999     456666554 2  255554

>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent

Probab=99.95  E-value=6e-27  Score=206.09  Aligned_cols=121  Identities=23%  Similarity=0.286  Sum_probs=109.7

Q ss_pred             eeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCC-CC---ChHHHHHHHHh-
Q 023530          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-EN---EREEELLELVQ-  203 (281)
Q Consensus       129 ~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k-~~---~~e~~l~~~L~-  203 (281)
                      +|||||+||+|||++++++++.++.++++|++||+|+   ++|++.++|+++|||+++++.+ ..   .+|+++.+.|+ 
T Consensus         1 ~riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~---~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~   77 (190)
T TIGR00639         1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNK---PDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRA   77 (190)
T ss_pred             CeEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECC---ccchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHh
Confidence            5899999999999999999999999999999999998   6789999999999999987732 21   23567888887 


Q ss_pred             -CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC
Q 023530          204 -NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK  256 (281)
Q Consensus       204 -~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~  256 (281)
                       ++|++|++|||+||+++|++.|++++||   ||||+|||+    .|++||+.+|++
T Consensus        78 ~~~D~iv~~~~~~il~~~~l~~~~~~~iNiHpslLP~yrG~----~p~~~ai~~g~~  130 (190)
T TIGR00639        78 HEVDLVVLAGFMRILGPTFLSRFAGRILNIHPSLLPAFPGL----HAVEQALEAGVK  130 (190)
T ss_pred             cCCCEEEEeCcchhCCHHHHhhccCCEEEEeCCcccCCCCc----cHHHHHHHcCCC
Confidence             8999999999999999999999999999   999999997    899999999864

In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.

>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed

Probab=99.94  E-value=1.9e-26  Score=204.36  Aligned_cols=126  Identities=25%  Similarity=0.294  Sum_probs=112.1

Q ss_pred             CeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCC---ChHHHHHHHHh
Q 023530          128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKEN---EREEELLELVQ  203 (281)
Q Consensus       128 ~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~---~~e~~l~~~L~  203 (281)
                      |+|||||+||+|+|+++|+++++++.+.++|++||||+   ++|.+.++|+++|||+++++ .+..   .+++++.+.|+
T Consensus         1 m~ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~---~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~   77 (200)
T PRK05647          1 MKRIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDR---PDAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALD   77 (200)
T ss_pred             CceEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecC---ccchHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHH
Confidence            57999999999999999999999999889999999998   67899999999999999977 3321   13567888887


Q ss_pred             --CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Ccce
Q 023530          204 --NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLC  260 (281)
Q Consensus       204 --~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~  260 (281)
                        ++|++|++|||+|+++++++.|++++||   ||||+|||+    .|++||+.+|++  |+|+
T Consensus        78 ~~~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHpslLP~yrG~----~p~~~ai~~g~~~tG~Tv  137 (200)
T PRK05647         78 AYQPDLVVLAGFMRILGPTFVSAYEGRIINIHPSLLPSFPGL----HTHEQALEAGVKVHGCTV  137 (200)
T ss_pred             HhCcCEEEhHHhhhhCCHHHHhhccCCEEEEeCccccCCCCc----cHHHHHHHcCCCeEEEEE
Confidence              8999999999999999999999999999   999999997    899999999874  5544

>PLN02285 methionyl-tRNA formyltransferase

Probab=99.89  E-value=7.5e-23  Score=194.10  Aligned_cols=132  Identities=17%  Similarity=0.177  Sum_probs=109.4

Q ss_pred             CCCCeeEEEEeeCC--hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCC--------ChhHHHHHHhCCCCEEEeCCCCCCh
Q 023530          125 IDPKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------NSHVIRFLERHGIPYHYLCAKENER  194 (281)
Q Consensus       125 ~~~~~rIavl~Sg~--GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~--------~a~~~~~A~~~gIP~~~i~~k~~~~  194 (281)
                      +++++||++|+|+.  -+||++|+++++.+..+++|++||||+ |++        .+++.++|+++|||++++.......
T Consensus         3 ~~~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~-~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~   81 (334)
T PLN02285          3 SGRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQP-PARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAG   81 (334)
T ss_pred             CCCccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCC-CCcccCCcccCCCHHHHHHHHcCCCcceecCccccC
Confidence            46789999999998  499999999988888789999999995 432        1369999999999976543111112


Q ss_pred             HHHHHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcC--CCccee
Q 023530          195 EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTD--KGCLCS  261 (281)
Q Consensus       195 e~~l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d--~g~~~~  261 (281)
                      ++++.+.|+  ++|++|+|+||+||+++|++.|++++||   ||||+|||+    .|++||+++||  +||++-
T Consensus        82 ~~~~~~~l~~~~~Dliv~~~~~~ilp~~~l~~~~~g~iNiHpSLLP~yRG~----~pi~~ai~~G~~~tGvTih  151 (334)
T PLN02285         82 EEDFLSALRELQPDLCITAAYGNILPQKFLDIPKLGTVNIHPSLLPLYRGA----APVQRALQDGVNETGVSVA  151 (334)
T ss_pred             CHHHHHHHHhhCCCEEEhhHhhhhcCHHHHhhccCCEEEEecccccCCCCc----CHHHHHHHcCCCcEEEEEE
Confidence            345667776  8999999999999999999999999999   999999997    99999999997  566554

>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group

Probab=99.88  E-value=1.7e-22  Score=175.82  Aligned_cols=125  Identities=24%  Similarity=0.278  Sum_probs=104.4

Q ss_pred             eeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCC---hHHHHHHHHh-
Q 023530          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENE---REEELLELVQ-  203 (281)
Q Consensus       129 ~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~~---~e~~l~~~L~-  203 (281)
                      |||+||+||+|+|++++++++..+...++|++|+||+   +...++.+|.+.++|...+. .....   .++++.+.++ 
T Consensus         1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   77 (181)
T PF00551_consen    1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITNP---DKPRGRSRAIKNGIPAQVADEKNFQPRSENDEELLELLES   77 (181)
T ss_dssp             EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESS---TTTHHHHHHHHTTHHEEEHHGGGSSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEeccc---cccccccccccCCCCEEeccccCCCchHhhhhHHHHHHHh
Confidence            6999999999999999999999887778999999996   45678899999999999887 22222   3467888888 


Q ss_pred             -CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Ccce
Q 023530          204 -NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLC  260 (281)
Q Consensus       204 -~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~  260 (281)
                       ++|++|++|||+||++++++.|++++||   ||||+|||+    .|++|++++|++  |+++
T Consensus        78 ~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHpslLP~yrG~----~p~~~ai~~g~~~~G~Tv  136 (181)
T PF00551_consen   78 LNPDLIVVAGYGRILPKEFLSIPPYGIINIHPSLLPKYRGA----SPIQWAILNGEKETGVTV  136 (181)
T ss_dssp             TT-SEEEESS-SS---HHHHHHSTTSEEEEESSSTTTTBSS----THHHHHHHHTSSEEEEEE
T ss_pred             hccceeehhhhHHHhhhhhhhcccccEEEEeecCCccCCCc----chhhhhhcCCcceeeeEE
Confidence             9999999999999999999999999999   999999997    999999999984  4444

Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....

>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=1.9e-20  Score=175.21  Aligned_cols=119  Identities=21%  Similarity=0.246  Sum_probs=101.0

Q ss_pred             CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC--------hhHHHHHHhCCCCEEEeCCCCCChHHH
Q 023530          128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN--------SHVIRFLERHGIPYHYLCAKENEREEE  197 (281)
Q Consensus       128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~--------a~~~~~A~~~gIP~~~i~~k~~~~e~~  197 (281)
                      ++||+||+|.+.  .+|++|+++   |   ++|++|+|. ||++.        .|+.+.|.++|||+++.. +. +.+ +
T Consensus         1 ~mkivF~GTp~fa~~~L~~L~~~---~---~eivaV~Tq-pdkp~gR~~~l~~spVk~~A~~~~ipv~qP~-~l-~~~-e   70 (307)
T COG0223           1 MMRIVFFGTPEFAVPSLEALIEA---G---HEIVAVVTQ-PDKPAGRGKKLTPSPVKRLALELGIPVFQPE-KL-NDP-E   70 (307)
T ss_pred             CcEEEEEcCchhhHHHHHHHHhC---C---CceEEEEeC-CCCccCCCCcCCCChHHHHHHHcCCceeccc-cC-CcH-H
Confidence            579999999985  889999883   4   699999997 78652        689999999999988854 22 222 5


Q ss_pred             HHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCCCcce
Q 023530          198 LLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDKGCLC  260 (281)
Q Consensus       198 l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~g~~~  260 (281)
                      +.+.++  ++|++|++.|.|||+.++++.++.+|||   ||||+|||+    +|+||++++||+=..+
T Consensus        71 ~~~~l~~l~~D~ivvvayG~ilp~~iL~~~~~G~iNvH~SLLPr~RGa----APIq~aI~~Gd~~TGv  134 (307)
T COG0223          71 FLEELAALDPDLIVVVAYGQILPKEILDLPPYGCINLHPSLLPRYRGA----APIQWAILNGDTETGV  134 (307)
T ss_pred             HHHHHhccCCCEEEEEehhhhCCHHHHhcCcCCeEEecCccCccccCc----cHHHHHHHcCCcccce
Confidence            667776  8999999999999999999999999999   999999997    9999999999844333

>PRK06988 putative formyltransferase; Provisional

Probab=99.78  E-value=1.2e-18  Score=163.95  Aligned_cols=119  Identities=23%  Similarity=0.305  Sum_probs=99.1

Q ss_pred             CeeEEEEeeCC-h-hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC-----hhHHHHHHhCCCCEEEeCCCCCChHHHHHH
Q 023530          128 KYKVAVLASKQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLCAKENEREEELLE  200 (281)
Q Consensus       128 ~~rIavl~Sg~-G-snL~aLl~~~~~g~l~~eI~~Visn~pd~~~-----a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~  200 (281)
                      |+||+||+|+. + .||++|++.   +   .+|++|+|+ ||++.     .++.++|+++|||++.... . + ++++.+
T Consensus         2 ~mkIvf~Gs~~~a~~~L~~L~~~---~---~~i~~Vvt~-~d~~~~~~~~~~v~~~A~~~gip~~~~~~-~-~-~~~~~~   71 (312)
T PRK06988          2 KPRAVVFAYHNVGVRCLQVLLAR---G---VDVALVVTH-EDNPTENIWFGSVAAVAAEHGIPVITPAD-P-N-DPELRA   71 (312)
T ss_pred             CcEEEEEeCcHHHHHHHHHHHhC---C---CCEEEEEcC-CCCCccCcCCCHHHHHHHHcCCcEEcccc-C-C-CHHHHH
Confidence            57999999998 3 799999874   4   589999998 55442     4789999999999987431 1 1 234667


Q ss_pred             HHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcC--CCcce
Q 023530          201 LVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTD--KGCLC  260 (281)
Q Consensus       201 ~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d--~g~~~  260 (281)
                      .|+  ++|++|+++|++||++++++.++.++||   ||||+|||+    .|++||+++||  +|+|+
T Consensus        72 ~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpslLP~yRG~----~pi~~ai~~g~~~tGvTi  134 (312)
T PRK06988         72 AVAAAAPDFIFSFYYRHMIPVDLLALAPRGAYNMHGSLLPKYRGR----VPVNWAVLNGETETGATL  134 (312)
T ss_pred             HHHhcCCCEEEEehhccccCHHHHhcCCCCEEEeeCccccCCCCc----CHHHHHHHcCCCceEEEE
Confidence            777  8999999999999999999999999999   999999997    99999999997  45444

>TIGR00460 fmt methionyl-tRNA formyltransferase

Probab=99.75  E-value=5.8e-18  Score=159.31  Aligned_cols=115  Identities=18%  Similarity=0.251  Sum_probs=95.9

Q ss_pred             eeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCC--------ChhHHHHHHhCCCCEEEeCCCCCChHHHH
Q 023530          129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP--------NSHVIRFLERHGIPYHYLCAKENEREEEL  198 (281)
Q Consensus       129 ~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~--------~a~~~~~A~~~gIP~~~i~~k~~~~e~~l  198 (281)
                      |||+||+|+..  .+|++|++.   |   .+|++|+|+ ||++        ..++.++|+++|||++...+.  +.+ +.
T Consensus         1 mkIvf~Gs~~~a~~~L~~L~~~---~---~~i~~Vvt~-pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~--~~~-~~   70 (313)
T TIGR00460         1 LRIVFFGTPTFSLPVLEELRED---N---FEVVGVVTQ-PDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQ--RQL-EE   70 (313)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---C---CcEEEEEcC-CCCccCCCCCCCCChHHHHHHHcCCCEEecCCC--CcH-HH
Confidence            58999999975  788888773   4   689999998 5543        246899999999999886522  112 44


Q ss_pred             HHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCCC
Q 023530          199 LELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDKG  257 (281)
Q Consensus       199 ~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~g  257 (281)
                      ++.++  ++|++|+++|++||++++++.+++++||   ||||+|||+    +|++||+++||+=
T Consensus        71 ~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpSlLP~yRG~----~pi~wai~~G~~~  130 (313)
T TIGR00460        71 LPLVRELKPDVIVVVSFGKILPKEFLDLFPYGCINVHPSLLPRWRGG----APIQRAILNGDKK  130 (313)
T ss_pred             HHHHHhhCCCEEEEccchhhCCHHHHhhccCCEEEecCccccCCCCc----cHHHHHHHCCCCe
Confidence            55566  8999999999999999999999999999   999999997    9999999999743

The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.

>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed

Probab=99.75  E-value=5.4e-18  Score=159.11  Aligned_cols=119  Identities=20%  Similarity=0.249  Sum_probs=98.1

Q ss_pred             eeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCC--------ChhHHHHHHhCCCCEEEeCCCCCChHHHH
Q 023530          129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP--------NSHVIRFLERHGIPYHYLCAKENEREEEL  198 (281)
Q Consensus       129 ~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~--------~a~~~~~A~~~gIP~~~i~~k~~~~e~~l  198 (281)
                      |||+||+|+.-  .+|++|+++   +   .+|++|+|. ||.+        ..++.++|+++|||++.... .+  +.++
T Consensus         1 mkIvf~G~~~~a~~~L~~L~~~---~---~~i~~Vvt~-~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~-~~--~~~~   70 (309)
T PRK00005          1 MRIVFMGTPEFAVPSLKALLES---G---HEVVAVVTQ-PDRPAGRGKKLTPSPVKQLALEHGIPVLQPEK-LR--DPEF   70 (309)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---C---CcEEEEECC-CCCCCCCCCCCCCCHHHHHHHHcCCCEECcCC-CC--CHHH
Confidence            59999999874  899998874   3   589999997 5533        24789999999999977442 11  2345


Q ss_pred             HHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCCCccee
Q 023530          199 LELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDKGCLCS  261 (281)
Q Consensus       199 ~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~g~~~~  261 (281)
                      .+.|+  ++|++|+++|++||++++++.++.++||   ||||+|||+    +|++||+++|++-+.++
T Consensus        71 ~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpslLP~yRG~----~pi~wai~~g~~~~GvT  134 (309)
T PRK00005         71 LAELAALNADVIVVVAYGQILPKAVLDIPRLGCINLHASLLPRWRGA----APIQRAIIAGDAETGVT  134 (309)
T ss_pred             HHHHHhcCcCEEEEehhhcccCHHHHhcCCCCEEEEeCcccccCCCc----cHHHHHHHcCCCeEEEE
Confidence            66666  8999999999999999999999999999   999999997    99999999998544444

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=99.73  E-value=1.6e-17  Score=125.73  Aligned_cols=72  Identities=15%  Similarity=0.122  Sum_probs=66.7

Q ss_pred             cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (281)
Q Consensus        42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~  117 (281)
                      +++||+.||||||||++||++|+++||||+|++|+..  ++.|+|+++++.+.  .+.++|+++|++++++++++.
T Consensus         1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~--~~~F~m~~~~~~~~--~~~~~l~~~l~~~~~~~~l~i   72 (77)
T cd04893           1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMAIL--GTEFALTMLVEGSW--DAIAKLEAALPGLARRLDLTL   72 (77)
T ss_pred             CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEE--cCEEEEEEEEEecc--ccHHHHHHHHHHHHHHcCCEE
Confidence            4799999999999999999999999999999999984  78999999999884  478999999999999999873

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=99.70  E-value=9.6e-17  Score=119.87  Aligned_cols=74  Identities=34%  Similarity=0.606  Sum_probs=67.5

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~  117 (281)
                      +|++.|+||||||++||++|+++|+||++++|++....+.|+|++++.+|+...+.++|+++|+++++++++.|
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~   74 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAEFDMDW   74 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCcC
Confidence            58999999999999999999999999999999986667899999999999633689999999999999998763

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=99.68  E-value=2.1e-16  Score=161.54  Aligned_cols=119  Identities=18%  Similarity=0.128  Sum_probs=97.7

Q ss_pred             eeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCC-----ChhHHHHHHhCCCCEEEeCCCCCChHHHHHHH
Q 023530          129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYLCAKENEREEELLEL  201 (281)
Q Consensus       129 ~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~-----~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~  201 (281)
                      |||+||+|+..  .+|++|++.   |   .+|++|+|. ||+|     ..++.++|+++|||++....- +  +.++.+.
T Consensus         1 mkivf~g~~~~a~~~l~~L~~~---~---~~i~~V~t~-pd~~~~~~~~~~v~~~a~~~~ip~~~~~~~-~--~~~~~~~   70 (660)
T PRK08125          1 MKAVVFAYHDIGCVGIEALLAA---G---YEIAAVFTH-TDNPGENHFFGSVARLAAELGIPVYAPEDV-N--HPLWVER   70 (660)
T ss_pred             CeEEEECCCHHHHHHHHHHHHC---C---CcEEEEEeC-CCCCcCCCCcCHHHHHHHHcCCcEEeeCCC-C--cHHHHHH
Confidence            58999999874  889988873   4   589999997 5543     136899999999999985421 1  2345666


Q ss_pred             Hh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCCCccee
Q 023530          202 VQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDKGCLCS  261 (281)
Q Consensus       202 L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~g~~~~  261 (281)
                      |+  ++|++|+++|++||++++++.++.++||   ||||+|||+    +|++||+++||+-..++
T Consensus        71 l~~~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~slLP~yRG~----~p~~wai~~g~~~~GvT  131 (660)
T PRK08125         71 IRELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGSLLPKYRGR----APLNWVLVNGETETGVT  131 (660)
T ss_pred             HHhcCCCEEEEccccccCCHHHHhhcCCCEEEEeCCcccCCCCc----CHHHHHHHcCCCcEEEE
Confidence            66  8999999999999999999999999999   999999997    99999999997543333

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=99.66  E-value=3.5e-16  Score=120.83  Aligned_cols=75  Identities=20%  Similarity=0.156  Sum_probs=68.7

Q ss_pred             cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccce
Q 023530           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS  118 (281)
Q Consensus        42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~  118 (281)
                      +++++++|+||||||++||++|+++||||++++|++.  .+.|+|++++++|..+.+.++|+++|++++++++++|.
T Consensus         1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l~~~   75 (88)
T cd04872           1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELGVKIR   75 (88)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence            4799999999999999999999999999999999874  78999999999985356799999999999999999853

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=99.65  E-value=6.5e-16  Score=116.01  Aligned_cols=71  Identities=17%  Similarity=0.158  Sum_probs=65.7

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~  117 (281)
                      +++|.|+||||||++||++|+++||||+|++|.+.  .+.|.|.+++++|+ +.+.++|+++|+.++++++++.
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~--~~~f~~~~~v~~p~-~~~~~~l~~~l~~l~~~l~l~i   71 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVI--HGRLSLGILVQIPD-SADSEALLKDLLFKAHELGLQV   71 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEE--cCeeEEEEEEEcCC-CCCHHHHHHHHHHHHHHcCceE
Confidence            47999999999999999999999999999998775  58899999999997 6789999999999999999873

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=99.61  E-value=3.5e-15  Score=112.50  Aligned_cols=73  Identities=16%  Similarity=0.166  Sum_probs=67.2

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC----CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE----KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~----~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~  117 (281)
                      ++++.|+||||||++||++|+++|+||.++++++.+    ..+.|+|++++.+|+ ..+.++|+++|+.+++++|+++
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~l~~~l~~l~~~~~~~~   77 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-GTDLDALREELEELCDDLNVDI   77 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-CCCHHHHHHHHHHHHHHhcceE
Confidence            479999999999999999999999999999998854    447999999999997 7889999999999999999884

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=99.61  E-value=9.3e-16  Score=119.02  Aligned_cols=75  Identities=20%  Similarity=0.143  Sum_probs=70.5

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~  117 (281)
                      +++++||+|+|||||||+||++|+++|+||+|.+|+..  .|.|+|.+.+++|+...+..+++++|++.++++|++.
T Consensus         2 ~~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm--~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~~lgv~V   76 (90)
T COG3830           2 MRAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVM--DGFFTMIMLVDISKEVVDFAALRDELAAEGKKLGVDV   76 (90)
T ss_pred             ceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHH--hhhceeeeEEcCChHhccHHHHHHHHHHHHHhcCcEE
Confidence            57899999999999999999999999999999999876  7999999999999767899999999999999999984

>PRK00194 hypothetical protein; Validated

Probab=99.59  E-value=7.2e-15  Score=113.56  Aligned_cols=76  Identities=21%  Similarity=0.165  Sum_probs=69.0

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccce
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS  118 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~  118 (281)
                      .++++++.|+||||||++||++|+++|+||+++++++.  .+.|+|++++++|..+.+.++|+++|+++++++++++.
T Consensus         2 ~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~~~   77 (90)
T PRK00194          2 MKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIM--DGYFTMIMLVDISESKKDFAELKEELEELGKELGVKIR   77 (90)
T ss_pred             ceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhh--CCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence            47999999999999999999999999999999999874  68999999999985356789999999999999999853

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=99.58  E-value=5e-15  Score=111.72  Aligned_cols=73  Identities=19%  Similarity=0.172  Sum_probs=63.4

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~  117 (281)
                      ++++||++|+||||||++||+.|+++||||+|++|.+.  .+.|.+.+.++.|+ . +.++|+++|+++++++|++.
T Consensus         1 ~~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~--~~~f~~~~~v~~~~-~-~~~~l~~~L~~l~~~~~l~v   73 (76)
T PF13740_consen    1 EQLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVL--GGRFTLIMLVSIPE-D-SLERLESALEELAEELGLDV   73 (76)
T ss_dssp             EEEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEE--TTEEEEEEEEEESH-H-HHHHHHHHHHHHHHHTT-EE
T ss_pred             CEEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEE--cCeEEEEEEEEeCc-c-cHHHHHHHHHHHHHHCCcEE
Confidence            36899999999999999999999999999999999876  78999999999985 3 78999999999999999874

>PRK07579 hypothetical protein; Provisional

Probab=99.57  E-value=1.2e-14  Score=132.45  Aligned_cols=108  Identities=16%  Similarity=0.172  Sum_probs=87.4

Q ss_pred             CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHH-hCCCCEEEeCCCCCChHHHHHHHHhC
Q 023530          128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE-RHGIPYHYLCAKENEREEELLELVQN  204 (281)
Q Consensus       128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~-~~gIP~~~i~~k~~~~e~~l~~~L~~  204 (281)
                      |+||.||+.+.-  .|++.|+.+  .++++.++.+|.++++        .+++ .+++|.+.++     -.+.+.+++++
T Consensus         1 ~k~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~~~~   65 (245)
T PRK07579          1 MKTILVLTDNVHAHALAVDLIAR--KNDMDVDYFCSFKSQT--------SFAKEIYQSPIKQLD-----VAERVAEIVER   65 (245)
T ss_pred             CceEEEEcccHHHHHHHHHHHhh--ccCcceEEEEeccCCc--------ccccccccccccCcc-----hhhhHHhhhcC
Confidence            679999999883  999999997  4567789999999862        1333 5566644443     12346677779


Q ss_pred             CCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC
Q 023530          205 TDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK  256 (281)
Q Consensus       205 ~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~  256 (281)
                      +|++|+++|||||++++++.+  ++||   ||||+|||+    +|++||+++|++
T Consensus        66 ~DliVvvayg~ilp~~iL~~~--~~iNiHpSLLP~yRGa----aPi~wAI~nGe~  114 (245)
T PRK07579         66 YDLVLSFHCKQRFPAKLVNGV--RCINIHPGFNPYNRGW----FPQVFSIINGLK  114 (245)
T ss_pred             CCEEEEchhhccCCHHHHhhC--CEEEEcCCcCCCCCCc----CHHHHHHHCCCe
Confidence            999999999999999999987  4999   999999997    999999999984

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.52  E-value=5.5e-14  Score=123.98  Aligned_cols=77  Identities=12%  Similarity=0.033  Sum_probs=70.3

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC--CCC--eEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhccc
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE--KKN--VFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~--~~g--~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~  116 (281)
                      .+|.++|+|+||||||++||++|+++|+||+++++.+.+  ++|  +|.|++++.+|+ +.+.++|+++|+++|++++++
T Consensus        94 ~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~-~~~~~~L~~~l~~l~~eL~vd  172 (190)
T PRK11589         94 ATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPA-SQDAANIEQAFKALCTELNAQ  172 (190)
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCC-CCCHHHHHHHHHHHHHHhCce
Confidence            369999999999999999999999999999999999843  344  999999999998 788999999999999999998


Q ss_pred             ce
Q 023530          117 RS  118 (281)
Q Consensus       117 ~~  118 (281)
                      ..
T Consensus       173 ~~  174 (190)
T PRK11589        173 GS  174 (190)
T ss_pred             EE
Confidence            43

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.38  E-value=4.2e-12  Score=112.05  Aligned_cols=74  Identities=12%  Similarity=-0.008  Sum_probs=66.6

Q ss_pred             cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (281)
Q Consensus        40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~  117 (281)
                      .++++||+.|+||||||++||+.|+++||||+|++|...  +|.|.|.+.+..|.  ...+.|+++|..+++++++..
T Consensus         6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~l--gg~Fa~i~lvs~~~--~~~~~le~~L~~l~~~~~L~i   79 (190)
T PRK11589          6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAML--GEEFTFIMLLSGSW--NAITLIESTLPLKGAELDLLI   79 (190)
T ss_pred             ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhh--CCceEEEEEEeCCh--hHHHHHHHHHHhhhhhcCeEE
Confidence            478999999999999999999999999999999999764  78999999998775  378999999999998888774

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.21  E-value=2.7e-11  Score=104.37  Aligned_cols=80  Identities=14%  Similarity=0.083  Sum_probs=71.8

Q ss_pred             CCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc--CC--CCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhh
Q 023530           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP--EK--KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM  112 (281)
Q Consensus        37 ~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~--~~--~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~  112 (281)
                      ..+..+|.+.|.+.||||||.++|++|++||+||+++++.+-  ++  +.+|.+.+.+.+|. ..+.+.|+++|+++|++
T Consensus        87 ~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa-~~~i~~l~~~f~al~~~  165 (176)
T COG2716          87 PANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPA-NLSISALRDAFEALCDE  165 (176)
T ss_pred             CCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCC-cCcHHHHHHHHHHHHHh
Confidence            456678999999999999999999999999999999998772  33  44999999999998 89999999999999999


Q ss_pred             hcccc
Q 023530          113 FNAMR  117 (281)
Q Consensus       113 l~l~~  117 (281)
                      ++++.
T Consensus       166 L~v~~  170 (176)
T COG2716         166 LNVDG  170 (176)
T ss_pred             hccee
Confidence            99874

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.94  E-value=8.5e-10  Score=85.06  Aligned_cols=72  Identities=13%  Similarity=0.029  Sum_probs=58.7

Q ss_pred             EEEEEcCC-CcchHHHHHHHHHhCCCeEeEeeeeccC-------CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcc
Q 023530           44 IHVFHCPD-EVGIVAKLSECIASRGGNILAADVFVPE-------KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (281)
Q Consensus        44 iltV~G~D-rpGIVa~VS~~La~~giNI~dl~q~~~~-------~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l  115 (281)
                      ++|+.|.| +.|+|++||+.|+++|+||.++++....       ..+..-|.++++.|  +.+.++|+++|.++++++|+
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~--~~~~~~lr~~L~~la~elgv   78 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ--PADLEALRAALLELASELNV   78 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC--CCCHHHHHHHHHHHhcccCc
Confidence            58999999 9999999999999999999999995311       11244556666655  46899999999999999999


Q ss_pred             cc
Q 023530          116 MR  117 (281)
Q Consensus       116 ~~  117 (281)
                      |.
T Consensus        79 DI   80 (84)
T cd04871          79 DI   80 (84)
T ss_pred             eE
Confidence            83

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>KOG3082 consensus Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=2.8e-09  Score=99.21  Aligned_cols=121  Identities=17%  Similarity=0.177  Sum_probs=82.5

Q ss_pred             CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCC-------CChhHHHHHHhCCCCEEEeCCCCCChHHHH
Q 023530          128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-------PNSHVIRFLERHGIPYHYLCAKENEREEEL  198 (281)
Q Consensus       128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~-------~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l  198 (281)
                      +.++.+++|-..  .-++.|+..       .+.+.+++..|-+       ...|+...|...|+++..+-..    ++..
T Consensus         6 ~~nv~~~~sd~~~~~~~~~l~~~-------~~~~~iv~~pp~~~~~~k~~lpsP~a~~a~~k~la~~kl~p~----~k~~   74 (338)
T KOG3082|consen    6 PLNVIFLGSDEFSIPILRKLIGC-------VQRVRIVSAPPKRQSRRKEILPSPAAMEANAKGLAYIKLQPG----WKNF   74 (338)
T ss_pred             ccCcchhccccccchhhhhHHHH-------HHhhhhccCCcchhhccCccCCCccccccccccceeeeccCh----hhcc
Confidence            445666666664  334455543       3455566653211       1234555666677776654311    1111


Q ss_pred             HHHHh-CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcC--CCcceeee
Q 023530          199 LELVQ-NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTD--KGCLCSTR  263 (281)
Q Consensus       199 ~~~L~-~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d--~g~~~~~~  263 (281)
                      -+... +.|++|.|.|+|+|+.+|+.++++++||   ||||+|||+    +||++|+++||  +|+++-+.
T Consensus        75 ~d~~~~~~~l~ItaSfGrllp~kll~~~pyg~iNVHPSLLPk~RGa----APV~~all~GD~~TGVTI~~i  141 (338)
T KOG3082|consen   75 HDLMRPDDQLAITASFGRLLPFKLLNQLPYGGINVHPSLLPKYRGA----APVQRALLNGDTLTGVTIQTI  141 (338)
T ss_pred             ccccCCCcceEEEeehhccCcHHHHhhCCcceeecChhhcccccCc----chHHHHHhcCCcccceEEEEe
Confidence            14444 8999999999999999999999999999   999999998    99999999998  66666543

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.78  E-value=2.8e-08  Score=70.96  Aligned_cols=64  Identities=20%  Similarity=0.163  Sum_probs=48.4

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCC-CeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKK-NVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~-g~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      |+|++.++||||++++|+++|+++|+||..+.++..... +.+++....+    ..+.+.+.++|+++.
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~   65 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD----EEDLEKLLEELEALP   65 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE----GHGHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC----CCCHHHHHHHHHccc
Confidence            678999999999999999999999999999999876432 2334333333    235677777777654

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=98.51  E-value=3.3e-07  Score=80.02  Aligned_cols=74  Identities=22%  Similarity=0.291  Sum_probs=59.9

Q ss_pred             cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (281)
Q Consensus        42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~  117 (281)
                      ++++++.+.|+||++++||++|+++|+||.+++......+|.-  ++.+.+|+.....++|+++|+++++.++++.
T Consensus         2 ~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~s--r~TIvv~~~~~~ieqL~kQL~KLidVl~V~~   75 (174)
T CHL00100          2 KHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGIS--RITMVVPGDDRTIEQLTKQLYKLVNILKVQD   75 (174)
T ss_pred             eEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCcc--EEEEEEECCHHHHHHHHHHHHHHhHhhEEEe
Confidence            5789999999999999999999999999999999654445544  4555555522238899999999999988763

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=98.39  E-value=2e-06  Score=64.67  Aligned_cols=67  Identities=15%  Similarity=0.119  Sum_probs=50.8

Q ss_pred             CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 023530           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (281)
Q Consensus        39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~l  109 (281)
                      ...+..|.+.+.||||++++|++.+++.|+||.+++.......+.+.+.+.+++++    .++|..-++++
T Consensus         3 ~~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d----~~~L~~ii~~L   69 (80)
T PF13291_consen    3 KSFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD----LEHLNQIIRKL   69 (80)
T ss_dssp             --EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS----HHHHHHHHHHH
T ss_pred             cEEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC----HHHHHHHHHHH
Confidence            34678899999999999999999999999999999997642367888899999874    55555555444

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=98.37  E-value=5.4e-07  Score=78.00  Aligned_cols=93  Identities=14%  Similarity=0.067  Sum_probs=69.6

Q ss_pred             cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccceeee
Q 023530           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR  121 (281)
Q Consensus        42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~~~~  121 (281)
                      .++|+++|+||||++..+++..+++||||++++-..  .++.|...+.+..|.+  ..+.|++.|..+..+.|+... |.
T Consensus         5 ~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~--~g~~~a~i~lisgs~d--av~~le~~l~~l~~~~~L~v~-m~   79 (176)
T COG2716           5 YLVITAVGADRPGLVNTLARAVASSGCNWLESRLAM--LGEEFAGIMLISGSWD--AVTLLEATLPLLGAELDLLVV-MK   79 (176)
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHH--hhcceeEEEEEeeCHH--HHHHHHHHhhcccccCCeEEE-Ee
Confidence            389999999999999999999999999999988743  3667777777777652  578999999999998887643 22


Q ss_pred             ecCCC----CCeeEEEEeeCCh
Q 023530          122 VPDID----PKYKVAVLASKQE  139 (281)
Q Consensus       122 ~~~~~----~~~rIavl~Sg~G  139 (281)
                      -....    ...-+.|=+.+.+
T Consensus        80 rt~~~~~~a~~~~v~v~v~a~D  101 (176)
T COG2716          80 RTGAHPTPANPAPVWVYVDAND  101 (176)
T ss_pred             ecCCCccCCCCceEEEEEEecC
Confidence            11111    1234566566654

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.32  E-value=2.9e-06  Score=63.51  Aligned_cols=46  Identities=11%  Similarity=0.107  Sum_probs=40.1

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~   91 (281)
                      +++|.|+||||+++.||++|+++|+||.+.+.++.  .|.+...+.+.
T Consensus         2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~   47 (74)
T cd04925           2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVR   47 (74)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEE
Confidence            68999999999999999999999999999988764  66776666664

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=98.25  E-value=6.2e-06  Score=68.75  Aligned_cols=77  Identities=18%  Similarity=0.165  Sum_probs=59.6

Q ss_pred             CCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           34 SSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        34 ~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      +-.++.-..+.+++.+.|+||++++|++.|+++++||.++++......+.+.+.+.+++++...+.+++.+.|+.+.
T Consensus        48 ~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~  124 (136)
T PRK08577         48 PIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLE  124 (136)
T ss_pred             EcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCC
Confidence            34445556899999999999999999999999999999998865444567778888998862134566666666554

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.05  E-value=3.5e-05  Score=55.39  Aligned_cols=49  Identities=18%  Similarity=0.170  Sum_probs=39.8

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP   94 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~   94 (281)
                      .|+|.|+|+||++++++++|+++|+||.++......  +.....+.+..+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~--~~~~~~~~v~~~~   50 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTG--ERALDVFYVTDSD   50 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecC--CEEEEEEEEECCC
Confidence            588999999999999999999999999999987642  3455556666544

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.99  E-value=2.6e-05  Score=55.79  Aligned_cols=49  Identities=22%  Similarity=0.134  Sum_probs=37.6

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC---CCCeEEEEEEEEeC
Q 023530           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE---KKNVFYSRSEFIFD   93 (281)
Q Consensus        45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~---~~g~F~mrlev~~p   93 (281)
                      +.|.++|+||.+++|++.++++|+||.++.+....   ..+...+.+.++++
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~   52 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR   52 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC
Confidence            35788999999999999999999999999876432   13444555566654

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.98  E-value=3e-05  Score=56.32  Aligned_cols=63  Identities=19%  Similarity=0.190  Sum_probs=44.4

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (281)
Q Consensus        43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~  108 (281)
                      |.+++..+|+||.++++++.|+++|+||.++.+...+....-.+++.++.+.   +.+.+.+.|++
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~---~~~~~~~~L~~   64 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE---DRERAKEILKE   64 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH---HHHHHHHHHHH
Confidence            6789999999999999999999999999999765532111222345554332   45566666654

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.96  E-value=7.7e-05  Score=54.05  Aligned_cols=48  Identities=17%  Similarity=0.104  Sum_probs=38.6

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeC
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD   93 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p   93 (281)
                      .+.|.|+||||+++++++.|+++|+||.+++....  .+.....+.+..+
T Consensus         2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~f~i~~~   49 (70)
T cd04899           2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATL--GERAEDVFYVTDA   49 (70)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec--CCEEEEEEEEECC
Confidence            57899999999999999999999999999998754  3444445555543

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.93  E-value=4.6e-05  Score=55.90  Aligned_cols=61  Identities=15%  Similarity=0.228  Sum_probs=47.6

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      |.+.++||||++++|++.+++.|+||.+++.... ..+...+.+.+++++    .++|.+-+..+.
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~vev~~----~~~l~~i~~~L~   62 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVDAPS----EEHAETIVAAVR   62 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEEcCC----HHHHHHHHHHHh
Confidence            6789999999999999999999999999987543 246777778888764    555555555443

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=97.92  E-value=5.1e-05  Score=55.77  Aligned_cols=50  Identities=16%  Similarity=0.163  Sum_probs=42.0

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP   94 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~   94 (281)
                      .+.+.++|+||++++|++.|++.|+||..+++...+ .+.+.+.++++..+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~-~~~~~i~~~v~v~~   51 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPI-HGRANVTISIDTST   51 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCC-CCeEEEEEEEEcCc
Confidence            578999999999999999999999999999985432 46777788887654

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=97.92  E-value=5.1e-05  Score=54.13  Aligned_cols=64  Identities=23%  Similarity=0.122  Sum_probs=46.8

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~l  109 (281)
                      .|.+.+.|+||++++++++|+++|+||..+.+...+.++...+.+++..++  ...+++.++|+.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~   65 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDD--DVIEQIVKQLNKL   65 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCH--HHHHHHHHHHhCC
Confidence            477889999999999999999999999999986532456666667776531  2344455555443

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>PRK04435 hypothetical protein; Provisional

Probab=97.91  E-value=6.4e-05  Score=63.81  Aligned_cols=67  Identities=21%  Similarity=0.214  Sum_probs=52.9

Q ss_pred             ccccCCCCccCCCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 023530           22 FKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP   94 (281)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~   94 (281)
                      +|..=|||..     ........|++.++|+||++++|.+.++++|+||..++|... ..|...+.+.++..+
T Consensus        54 ykd~vf~~~~-----~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~-~~g~a~vs~tVevs~  120 (147)
T PRK04435         54 YKDYVFPFDE-----MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIP-LQGRANVTISIDTSS  120 (147)
T ss_pred             CCCeeECccc-----cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcC-CCCEEEEEEEEEeCC
Confidence            3444555544     355678999999999999999999999999999999998653 356667777787764

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=97.82  E-value=0.00022  Score=53.17  Aligned_cols=65  Identities=15%  Similarity=0.099  Sum_probs=48.4

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 023530           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (281)
Q Consensus        43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~l  109 (281)
                      +.|.|.++||||+.+.++.+|+.+|+||.+.+-++.. .|.=.=.+.|.-.. +.+..+|++++++.
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~-dG~~LDtF~V~d~~-~~~~~~~~~~~~~~   66 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTD-DGLALDIFVVTGWK-RGETAALGHALQKE   66 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcC-CCeEEEEEEEecCC-ccchHHHHHHHHHh
Confidence            5689999999999999999999999999999888643 34322233343333 55677888888753

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.80  E-value=9.2e-05  Score=56.33  Aligned_cols=67  Identities=12%  Similarity=0.085  Sum_probs=50.5

Q ss_pred             cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      ++.+++...|+||++++|++.++.+|.||..++.......|...|.+.+...  +...+++...|+++-
T Consensus         2 ~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~--~~~i~qi~kQL~KLi   68 (76)
T PRK06737          2 SHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCT--ENEATLLVSQLKKLI   68 (76)
T ss_pred             eEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECC--HHHHHHHHHHHhCCc
Confidence            5789999999999999999999999999999998654445665665655422  334566666666543

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=97.80  E-value=0.00017  Score=51.61  Aligned_cols=62  Identities=23%  Similarity=0.258  Sum_probs=44.3

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~l  109 (281)
                      .+++.++|++|+++++++.|+++++||.++.+.... .+.+.+.+.+.  . ....+++.+.|++.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~i~~~--~-~~~~~~~~~~L~~~   63 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER-EGKARIYMELE--G-VGDIEELVEELRSL   63 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC-CCeEEEEEEEe--c-cccHHHHHHHHhCC
Confidence            578999999999999999999999999999886432 34555554444  2 12344555555543

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=97.79  E-value=0.00018  Score=52.14  Aligned_cols=64  Identities=11%  Similarity=0.041  Sum_probs=47.2

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      |.|.+.+.|++|+++++++.|+++|+||..+.+......+...+.+.+...    +.+++++.++.+.
T Consensus         1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~i~~L~   64 (79)
T cd04881           1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET----SEAALNAALAEIE   64 (79)
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC----CHHHHHHHHHHHH
Confidence            468899999999999999999999999999987543222555555555533    4566666665554

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=97.75  E-value=0.00011  Score=53.29  Aligned_cols=61  Identities=18%  Similarity=0.120  Sum_probs=43.6

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 023530           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (281)
Q Consensus        45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~l  109 (281)
                      +.+.++|+||+++++++.|+++|+||.++........+...+.+.++.+.    ..++.+++.+.
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~----~~~~~~~l~~~   62 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPV----PDEVLEELRAL   62 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCC----CHHHHHHHHcC
Confidence            56789999999999999999999999998754322345556666665432    34555555543

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=97.74  E-value=0.00011  Score=50.68  Aligned_cols=49  Identities=18%  Similarity=0.183  Sum_probs=39.3

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 023530           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP   94 (281)
Q Consensus        45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~   94 (281)
                      |.+.++|+||+++++++.|+++++||.++.+... ..+...+.+.+..+.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~   49 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTD-DDGLATIRLTLEVRD   49 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEEC-CCCEEEEEEEEEECC
Confidence            4678999999999999999999999999987543 234555677777664

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=97.69  E-value=0.00016  Score=55.98  Aligned_cols=69  Identities=10%  Similarity=0.053  Sum_probs=51.8

Q ss_pred             cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (281)
Q Consensus        42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~  111 (281)
                      +.+|++.-.|+||++++||..|+.+|.||..++..-....|.-.|.+.+...+ ....+++.+.|+++-+
T Consensus         2 k~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d-~~~ieqI~kQL~Klid   70 (84)
T PRK13562          2 TRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD-DTSLHILIKKLKQQIN   70 (84)
T ss_pred             cEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC-HHHHHHHHHHHhCCcc
Confidence            56899999999999999999999999999999886554556666666665333 3345666666666543

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=97.67  E-value=0.00023  Score=50.39  Aligned_cols=61  Identities=25%  Similarity=0.285  Sum_probs=44.1

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 023530           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (281)
Q Consensus        45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~l  109 (281)
                      +.+.++|++|+++++++.|+++|+||.++........+...+.+.+  .. . ..+++.+.|+++
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v--~~-~-~~~~l~~~l~~~   62 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV--DS-P-VPEEVLEELKAL   62 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc--CC-C-CCHHHHHHHHcC
Confidence            6788999999999999999999999999988643223555555555  32 2 355666666554

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.60  E-value=0.0008  Score=49.84  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=32.3

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP   78 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~   78 (281)
                      .+.|.++||||+.+.|+++|+++|+||.+..-++.
T Consensus         3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~   37 (73)
T cd04900           3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTT   37 (73)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEe
Confidence            68899999999999999999999999999987654

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.60  E-value=0.00082  Score=50.57  Aligned_cols=35  Identities=17%  Similarity=0.237  Sum_probs=32.5

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV   77 (281)
Q Consensus        43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~   77 (281)
                      +++.|.|+||||+.+.++++|+++|+||.+.+-++
T Consensus         1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~T   35 (76)
T cd04927           1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVST   35 (76)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEE
Confidence            36899999999999999999999999999988875

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK03381 PII uridylyl-transferase; Provisional

Probab=97.59  E-value=0.0022  Score=67.71  Aligned_cols=70  Identities=13%  Similarity=-0.019  Sum_probs=55.6

Q ss_pred             cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCC-CCHHHHHHHHHHHhh
Q 023530           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIK-WPREQMDEDFFKLSK  111 (281)
Q Consensus        40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~-~~~~~L~~~L~~la~  111 (281)
                      .....|+|.|+||||+++.||.+|+.+|+||++.+.++  ..|.+...+.|.-+... ...+.++++|++...
T Consensus       597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L~  667 (774)
T PRK03381        597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPPDAALLRQDLRRALD  667 (774)
T ss_pred             CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcchHHHHHHHHHHHHc
Confidence            45678999999999999999999999999999999987  47888777777654312 235677888876544

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=97.56  E-value=0.00044  Score=52.61  Aligned_cols=67  Identities=7%  Similarity=0.089  Sum_probs=51.9

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      +++.|++.-.++||.+++|++.++.+|.||..++.......+.-.|.+.++  + +-..+++.+.|+++-
T Consensus         2 m~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~-~~~i~ql~kQL~KL~   68 (76)
T PRK11152          2 MQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--S-ERPIDLLSSQLNKLV   68 (76)
T ss_pred             ceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--C-CchHHHHHHHHhcCc
Confidence            578999999999999999999999999999999986543444444444443  3 556778888777653

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=97.55  E-value=0.00018  Score=76.36  Aligned_cols=69  Identities=19%  Similarity=0.281  Sum_probs=52.2

Q ss_pred             CCCCcc-CCCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCC--CCeEEEEEEEEeCC
Q 023530           26 KFPGEP-IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK--KNVFYSRSEFIFDP   94 (281)
Q Consensus        26 ~~~~~~-~~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~--~g~F~mrlev~~p~   94 (281)
                      .|+..| |...+.......+++|.|+|||||+++||++|+++|+||.+....+..+  ...|+++.....|.
T Consensus       762 ~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~  833 (850)
T TIGR01693       762 HFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKL  833 (850)
T ss_pred             CCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCC
Confidence            344333 4444555567899999999999999999999999999999999887532  33788766665553

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.54  E-value=0.00025  Score=52.63  Aligned_cols=57  Identities=11%  Similarity=0.123  Sum_probs=43.2

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~l  109 (281)
                      .|.+.|.||+|++++|++.+++.|+||..+++...   +.  +.+++++.+    .++|..-++++
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~--i~l~i~v~~----~~~L~~li~~L   58 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GR--IYLNFPTIE----FEKLQTLMPEI   58 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---Ce--EEEEeEecC----HHHHHHHHHHH
Confidence            47889999999999999999999999999998543   33  667777654    44444444443

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=97.49  E-value=0.0006  Score=54.11  Aligned_cols=70  Identities=16%  Similarity=0.033  Sum_probs=51.1

Q ss_pred             CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (281)
Q Consensus        39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~  111 (281)
                      +..+++|++.-.|+||++++||..|+.+|.||..++..-....+.-.|.+.+.  + +...+++...|+++-+
T Consensus         5 ~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~-~~~i~Qi~kQL~KLid   74 (96)
T PRK08178          5 THDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D-DQRLEQMISQIEKLED   74 (96)
T ss_pred             CCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C-chHHHHHHHHHhCCcC
Confidence            35679999999999999999999999999999999875433334333444343  3 3456777777776643

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.49  E-value=0.00028  Score=53.55  Aligned_cols=46  Identities=11%  Similarity=0.221  Sum_probs=36.3

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC--CCCeEEEEE
Q 023530           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE--KKNVFYSRS   88 (281)
Q Consensus        43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~--~~g~F~mrl   88 (281)
                      -++.|.|+||||++++|+..|++.|++|....-.+..  -...|+.+=
T Consensus         2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d   49 (75)
T cd04897           2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH   49 (75)
T ss_pred             EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc
Confidence            3789999999999999999999999999987765531  122566533

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=97.46  E-value=0.00076  Score=47.92  Aligned_cols=61  Identities=23%  Similarity=0.193  Sum_probs=42.4

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 023530           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (281)
Q Consensus        45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~l  109 (281)
                      |++.++|+||+++++++.|+++|+||..+.+......+...+.  +.+.+ . +..++.++|+++
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~-~-~~~~~i~~l~~~   62 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQ-P-IDEEVIEEIKKI   62 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCC-C-CCHHHHHHHHcC
Confidence            6788999999999999999999999999987532123333333  45443 2 455555555554

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=97.46  E-value=0.0014  Score=47.62  Aligned_cols=61  Identities=18%  Similarity=0.187  Sum_probs=42.9

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~  108 (281)
                      .+++..+|+||.++++++.|+++|+||..+........+.=.+.+.++.+    +.+++.+.|++
T Consensus         3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~----~~~~~~~~L~~   63 (72)
T cd04883           3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM----NPRPIIEDLRR   63 (72)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC----CHHHHHHHHHH
Confidence            57888999999999999999999999999876533223332334444432    34566666655

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.46  E-value=0.0012  Score=48.86  Aligned_cols=35  Identities=14%  Similarity=0.291  Sum_probs=31.9

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP   78 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~   78 (281)
                      .++|..+||||+.++|+++|+++|+||.....++.
T Consensus         3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~   37 (72)
T cd04926           3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ   37 (72)
T ss_pred             EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC
Confidence            57889999999999999999999999999987643

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=97.42  E-value=0.003  Score=55.07  Aligned_cols=136  Identities=22%  Similarity=0.178  Sum_probs=80.6

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccceeeeec
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP  123 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~~~~~~  123 (281)
                      -+++....+||...++|..++++|+||+..+|+.......=+..++++  . ..+.+.|.+.++.+.--  .   .+++.
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE--g-i~d~e~l~~~lks~d~v--~---ev~i~   75 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE--G-IDDFEKLLERLKSFDYV--I---EVEIH   75 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee--C-CCCHHHHHHHhhccceE--E---Eeeec
Confidence            467888999999999999999999999999999854322333445554  2 23677777777654211  1   23333


Q ss_pred             CCC---CCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCC-CChHHHH
Q 023530          124 DID---PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKE-NEREEEL  198 (281)
Q Consensus       124 ~~~---~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~-~~~e~~l  198 (281)
                      .+=   .-+||.|++-|.      .+.....|                    ++.-|.+|||.=..++ ... ---|+++
T Consensus        76 ~sle~iyGKRvIiiGGGA------qVsqVA~G--------------------AIsEADRHNiRGERISvDTiPlVGEE~l  129 (218)
T COG1707          76 RSLEEIYGKRVIIIGGGA------QVSQVARG--------------------AISEADRHNIRGERISVDTIPLVGEEEL  129 (218)
T ss_pred             chHHHHhCcEEEEECCch------hHHHHHHh--------------------hcchhhhcccccceeeeecccccChHHH
Confidence            221   236788776542      12222223                    1223456666544443 110 1124556


Q ss_pred             HHHHh------CCCEEEEecc
Q 023530          199 LELVQ------NTDFLVLARY  213 (281)
Q Consensus       199 ~~~L~------~~DlIVLAgY  213 (281)
                      .+..+      ++...||||-
T Consensus       130 aEAVkAV~rLpRv~iLVLAGs  150 (218)
T COG1707         130 AEAVKAVARLPRVGILVLAGS  150 (218)
T ss_pred             HHHHHHHhccccceeEEEecc
Confidence            55554      6899999985

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=97.38  E-value=0.0011  Score=48.77  Aligned_cols=33  Identities=12%  Similarity=0.186  Sum_probs=29.7

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFV   77 (281)
Q Consensus        45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~   77 (281)
                      +++.=+|+||.++++++.++++|+||..+.+..
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~   34 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF   34 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence            567789999999999999999999999997654

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.36  E-value=0.0006  Score=47.56  Aligned_cols=46  Identities=22%  Similarity=0.181  Sum_probs=36.6

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 023530           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (281)
Q Consensus        45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~   91 (281)
                      +++..+|+||.++++++.|+++|+||..+...... .+.-.+++.++
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~   46 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFS   46 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEEC
Confidence            35788999999999999999999999999866542 34555566665

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=97.35  E-value=0.00082  Score=58.09  Aligned_cols=68  Identities=19%  Similarity=0.126  Sum_probs=51.2

Q ss_pred             cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (281)
Q Consensus        42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~  111 (281)
                      ++++++.-+|+||.+++|++.|+++|+||..+...-....|...|.+.++..  +...+++...|+++-+
T Consensus         2 ~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~--~~~i~qi~kQl~KLid   69 (161)
T PRK11895          2 RHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGD--EQVIEQITKQLNKLID   69 (161)
T ss_pred             eEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECC--HHHHHHHHHHHhcccc
Confidence            5789999999999999999999999999999987543334555555555532  3346777777776643

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=97.31  E-value=0.00098  Score=57.37  Aligned_cols=67  Identities=21%  Similarity=0.181  Sum_probs=51.1

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (281)
Q Consensus        43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~  111 (281)
                      ++|++.-.|+||.+++|++.|+++|+||..+........|...|.+.++.+  +...+++.+.|+++-+
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d--~~~i~qi~kQl~Kli~   68 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGD--DKVLEQITKQLNKLVD   68 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECC--HHHHHHHHHHHhcCcc
Confidence            689999999999999999999999999999987644335666666666642  3356677777766643

acetohydroxyacid synthase is a synonym.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=97.30  E-value=0.00038  Score=50.10  Aligned_cols=58  Identities=14%  Similarity=0.140  Sum_probs=43.0

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (281)
Q Consensus        45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~  108 (281)
                      +++.+.|+||.++++++.++++|+||..+....  ..|...+.++++.+    ..+++-+.+.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~a~~~~~~~~~----~l~~li~~l~~   59 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT--RGEIGYVVIDIDSE----VSEELLEALRA   59 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC--CCCEEEEEEEcCCC----CCHHHHHHHHc
Confidence            677899999999999999999999998886532  23666666666654    34555555544

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.28  E-value=0.0014  Score=49.39  Aligned_cols=36  Identities=11%  Similarity=0.058  Sum_probs=32.5

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP   78 (281)
Q Consensus        43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~   78 (281)
                      .+|.|.++||||+.++|++.|+++|++|....-.+.
T Consensus         2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~   37 (72)
T cd04895           2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSD   37 (72)
T ss_pred             EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeec
Confidence            478999999999999999999999999998776553

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]

Probab=97.27  E-value=0.00044  Score=68.48  Aligned_cols=136  Identities=18%  Similarity=0.198  Sum_probs=92.9

Q ss_pred             eeEEEEeeCC-hhHHHHHHHhhh-cCCCCeeEEEEEeCCCCCC--ChhHHHHHHhCCCCEEEeC--CCCCChHHHHHHHH
Q 023530          129 YKVAVLASKQ-EHCLVDFLYGWQ-EGKLPVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLC--AKENEREEELLELV  202 (281)
Q Consensus       129 ~rIavl~Sg~-GsnL~aLl~~~~-~g~l~~eI~~Visn~pd~~--~a~~~~~A~~~gIP~~~i~--~k~~~~e~~l~~~L  202 (281)
                      |||||.+..- |   ++.....+ .|   .||++|++= ||..  .-+..--|++-|+|++..+  ++.+..--++++.-
T Consensus         1 mkiaiigqs~fg---~~vy~~lrk~g---heiv~vfti-pdk~g~~d~l~~ea~kdgvpv~k~srwr~k~~~lp~~~~~y   73 (881)
T KOG2452|consen    1 MKIAVIGQSLFG---QEVYCHLRKEG---HEVVGVFTV-PDKDGKADPLGLEAEKDGVPVFKYSRWRAKAQALPDVVAKY   73 (881)
T ss_pred             CeeEEechhhhh---HHHHHHHHhcC---ceEEEEEEe-cCCCCCcCcccccccccCcceechhhhhhhccccHHHHHHH
Confidence            5788876543 3   23333322 34   699999996 6631  1233335778899999876  22111112455555


Q ss_pred             h--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCCCccee-----------eeeec
Q 023530          203 Q--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDKGCLCS-----------TRISQ  266 (281)
Q Consensus       203 ~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~g~~~~-----------~~~~~  266 (281)
                      +  .++|-||--.-|.+|-++.+++..+-|=   ||||+.||+    ..+.|.++.||+-...|           ++..|
T Consensus        74 ~~~gaelnvlpfcsqfip~ei~~ap~~~siiyhps~lp~hrga----sainwtli~gd~~~g~sifwaddgldtg~~llq  149 (881)
T KOG2452|consen   74 QALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGA----SAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQ  149 (881)
T ss_pred             HhhcccccccchhhhccchhhcccccCCceeeccccCccccCc----cccceEEEeccccCceEEEeecCCccccchhhh
Confidence            5  8999999999999999999999876555   999999998    78888888887554444           33333


Q ss_pred             ccccccccccc
Q 023530          267 GRKTCKLIPHN  277 (281)
Q Consensus       267 ~~~~~~~~~~~  277 (281)
                        |+||..|..
T Consensus       150 --k~c~v~~~d  158 (881)
T KOG2452|consen  150 --KECEVLPDD  158 (881)
T ss_pred             --hhcccCCCc
Confidence              788888754

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.27  E-value=0.0023  Score=48.04  Aligned_cols=65  Identities=17%  Similarity=0.153  Sum_probs=45.8

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~  111 (281)
                      .+.+.-+|+||..+++.+.++++|+||..+.+.-.. ..+.+..+++++..   .+.+.+++.++.+.+
T Consensus         3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~---~~~~~~~~~l~~l~~   68 (80)
T cd04905           3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH---IEDPNVAEALEELKR   68 (80)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC---CCCHHHHHHHHHHHH
Confidence            456667899999999999999999999999775432 23345556666643   234666666665543

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=97.15  E-value=0.0022  Score=45.33  Aligned_cols=59  Identities=20%  Similarity=0.200  Sum_probs=40.7

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~  108 (281)
                      ++++.=+|+||.++++++.|+++|+||..+.++.....+.  .++.+.+..    .+.+.+.|++
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~--~~v~~~ve~----~~~~~~~L~~   59 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGK--ALLIFRTED----IEKAIEVLQE   59 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCe--EEEEEEeCC----HHHHHHHHHH
Confidence            3667789999999999999999999999988754322233  234444432    4555555544

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.12  E-value=0.0021  Score=46.48  Aligned_cols=36  Identities=19%  Similarity=0.172  Sum_probs=31.7

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP   78 (281)
Q Consensus        43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~   78 (281)
                      ..++|.-+|+||.+++|++.|+++|+||+.+-.+..
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~   37 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADT   37 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEec
Confidence            357788999999999999999999999999976543

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=97.12  E-value=0.003  Score=41.06  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=30.9

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVP   78 (281)
Q Consensus        45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~   78 (281)
                      +++.++|++|+++++++.|+++|+||..+.+...
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~   34 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTS   34 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEc
Confidence            4688999999999999999999999999998653

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=97.11  E-value=0.0034  Score=46.43  Aligned_cols=33  Identities=27%  Similarity=0.306  Sum_probs=28.6

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFV   77 (281)
Q Consensus        45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~   77 (281)
                      +.+.-+|+||.+++|-+.++++|+||..+++.-
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp   34 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRP   34 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeee
Confidence            345568999999999999999999999997653

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=97.02  E-value=0.0027  Score=46.30  Aligned_cols=58  Identities=21%  Similarity=0.174  Sum_probs=44.7

Q ss_pred             CCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           51 DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        51 DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      |+||++..|+..+..+|.||..++.......+...|.+.+..+  +...+.|...|+++.
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~--~~~i~~l~~Ql~Kli   58 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD--DREIEQLVKQLEKLI   58 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---CCHHHHHHHHHHCST
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC--chhHHHHHHHHhccC
Confidence            7899999999999999999999998775556777777777753  346777888777654

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.81  E-value=0.013  Score=44.41  Aligned_cols=33  Identities=12%  Similarity=0.158  Sum_probs=30.7

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeee
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~   76 (281)
                      ++.|.++||||+.++|++.|+++|++|....-.
T Consensus         2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~   34 (75)
T cd04896           2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFS   34 (75)
T ss_pred             EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEe
Confidence            688999999999999999999999999987765

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=96.74  E-value=0.0054  Score=54.83  Aligned_cols=67  Identities=18%  Similarity=0.120  Sum_probs=51.2

Q ss_pred             cccCCCCccCCCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeC
Q 023530           23 KSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD   93 (281)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p   93 (281)
                      +-..+.+.+++..+    ..+.|-+.-.||||+|..|++.|.++|+||-.++-......|.=.|.++++-|
T Consensus       133 riv~idg~~vd~~~----~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~  199 (208)
T TIGR00719       133 EITEINGFAIEFRG----EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKN  199 (208)
T ss_pred             EEEEECCEEEEecC----CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCC
Confidence            34455666777666    55677788899999999999999999999999988754445665666777643

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK07334 threonine dehydratase; Provisional

Probab=96.72  E-value=0.011  Score=57.59  Aligned_cols=70  Identities=13%  Similarity=0.019  Sum_probs=53.7

Q ss_pred             CCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc---CCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 023530           36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP---EKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (281)
Q Consensus        36 ~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~---~~~g~F~mrlev~~p~~~~~~~~L~~~L~~l  109 (281)
                      -..++.+..|.|.+.||+|++++|++.|++.++||.+++....   ...+...+.+.+++.+    .++|.+-+..+
T Consensus       320 l~~~~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d----~~~L~~vi~~L  392 (403)
T PRK07334        320 LVRAGRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD----AAHLQEVIAAL  392 (403)
T ss_pred             HHhCCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC----HHHHHHHHHHH
Confidence            3445567899999999999999999999999999999987542   1356777888888764    55555554444

>PRK05092 PII uridylyl-transferase; Provisional

Probab=96.47  E-value=0.0042  Score=66.82  Aligned_cols=40  Identities=15%  Similarity=0.169  Sum_probs=36.2

Q ss_pred             CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP   78 (281)
Q Consensus        39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~   78 (281)
                      .....+|.|.|+||||++++|+++|+++|+||.+....+.
T Consensus       840 s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~  879 (931)
T PRK05092        840 SNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATY  879 (931)
T ss_pred             CCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEc
Confidence            3355899999999999999999999999999999988864

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=96.33  E-value=0.019  Score=60.38  Aligned_cols=67  Identities=12%  Similarity=0.060  Sum_probs=53.8

Q ss_pred             cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      ..+..|.|.+.||+|+++.||+++++.++||.+++.......+.+.+++.+++++    .++|..-+..+-
T Consensus       664 ~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~----~~~L~~l~~~L~  730 (743)
T PRK10872        664 GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN----LQVLGRVLGKLN  730 (743)
T ss_pred             eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC----HHHHHHHHHHHh
Confidence            3567899999999999999999999999999999886543357788899999875    566666555554

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.31  E-value=0.056  Score=42.24  Aligned_cols=69  Identities=17%  Similarity=0.170  Sum_probs=49.2

Q ss_pred             cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCC--eEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhccc
Q 023530           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKN--VFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (281)
Q Consensus        42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g--~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~  116 (281)
                      +..+.+..+|+||-.+++-+.|+++|+|+..+++.-.. ..+  .||+.++..      .-+.++..++++.+.++..
T Consensus        14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~------~~~~~~~~l~~L~~~~~~~   85 (90)
T cd04931          14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK------SAPALDPIIKSLRNDIGAT   85 (90)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC------CCHHHHHHHHHHHHHhCCC
Confidence            34555556999999999999999999999999985322 122  455444332      2367788888888777654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=96.29  E-value=0.019  Score=41.82  Aligned_cols=60  Identities=12%  Similarity=0.088  Sum_probs=38.9

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (281)
Q Consensus        45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g~F~mrlev~~p~~~~~~~~L~~~L~~  108 (281)
                      ++|.=|||||-..++.+.+++ |.||++++..... ..+..+  +.++.+. ....+++.++|++
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~--v~ie~~~-~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVL--VGIQVPD-REDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEE--EEEEeCC-HHHHHHHHHHHHH
Confidence            356779999999999999999 9999999775421 122233  3344443 2234455555543

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4492 PheB ACT domain-containing protein [General function prediction only]

Probab=96.14  E-value=0.025  Score=47.47  Aligned_cols=80  Identities=15%  Similarity=0.131  Sum_probs=57.9

Q ss_pred             ccccCCCCccCCCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHH
Q 023530           22 FKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQ  101 (281)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~  101 (281)
                      +|..-|||---.++     +.+.|.+.=.||.|+.+++-+.+|+.++||+.++|.+ |.+|.=...+.++......+.+.
T Consensus        57 YkD~vfpf~~m~k~-----ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~i-pl~g~Anvtlsi~~ssm~~~V~~  130 (150)
T COG4492          57 YKDFVFPFYDMLKE-----RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTI-PLQGRANVTLSIDTSSMEKDVDK  130 (150)
T ss_pred             hccceeehhhcccc-----eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEeccc-ccCceeeEEEEEEchhhhhhHHH
Confidence            45566777653322     4688889999999999999999999999999999976 56777666777765543334444


Q ss_pred             HHHHHH
Q 023530          102 MDEDFF  107 (281)
Q Consensus       102 L~~~L~  107 (281)
                      +-+.+.
T Consensus       131 ii~kl~  136 (150)
T COG4492         131 IIEKLR  136 (150)
T ss_pred             HHHHHh
Confidence            444443

>PRK03381 PII uridylyl-transferase; Provisional

Probab=96.03  E-value=0.033  Score=58.94  Aligned_cols=56  Identities=14%  Similarity=0.124  Sum_probs=42.5

Q ss_pred             cccCCCCccCC-CCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530           23 KSLKFPGEPIE-SSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP   78 (281)
Q Consensus        23 ~~~~~~~~~~~-~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~   78 (281)
                      +.-.|+..|.. ..........+|+|.|+||||++++||++|+++|+||.+..-++.
T Consensus       687 ~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~  743 (774)
T PRK03381        687 PVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATL  743 (774)
T ss_pred             ccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec
Confidence            34445544432 222333356899999999999999999999999999999998774

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=95.99  E-value=0.04  Score=57.77  Aligned_cols=66  Identities=15%  Similarity=0.118  Sum_probs=52.9

Q ss_pred             cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      ..+..|.|.+.||+|+++.|++++++.++||.+++.... ..+.+.+.+.+++.+    .++|..-+..+-
T Consensus       624 ~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~----~~~L~~i~~~Lr  689 (702)
T PRK11092        624 EFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEK-DGRVYSAFIRLTARD----RVHLANIMRKIR  689 (702)
T ss_pred             eeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEc-CCCEEEEEEEEEECC----HHHHHHHHHHHh
Confidence            456789999999999999999999999999999997543 246778888888874    556666555554

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.94  E-value=0.048  Score=40.13  Aligned_cols=63  Identities=19%  Similarity=0.302  Sum_probs=46.4

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeE-EEEEEEEeCCC---CCCHHHHHHHHHHHh
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVF-YSRSEFIFDPI---KWPREQMDEDFFKLS  110 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F-~mrlev~~p~~---~~~~~~L~~~L~~la  110 (281)
                      ++||.|||+.|+=.++.+.+.+-|.+|..-+..++   |.. |..+ +-+|..   .+.-+.|+..|.+.|
T Consensus         2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTD---GkWCyiv~-wVv~~~~~~~~rW~lLK~RL~~~C   68 (69)
T cd04894           2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTD---GRWCYIVF-WVVPRPPSIKVRWDLLKNRLMSAC   68 (69)
T ss_pred             EEEEeCCCccCcccHHHHHHHHhceEEEecccccC---CcEEEEEE-EEecCCCCCcccHHHHHHHHHhcC
Confidence            68999999999999999999999999998877654   533 4333 333431   355677887776654

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=95.85  E-value=0.011  Score=43.21  Aligned_cols=35  Identities=26%  Similarity=0.249  Sum_probs=30.3

Q ss_pred             cEEEEEEcC----CCcchHHHHHHHHHhCCCeEeEeeee
Q 023530           42 HGIHVFHCP----DEVGIVAKLSECIASRGGNILAADVF   76 (281)
Q Consensus        42 ~~iltV~G~----DrpGIVa~VS~~La~~giNI~dl~q~   76 (281)
                      -..|+|.|+    |.||+++++++.|+++|+||..++++
T Consensus         6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~isS~   44 (65)
T PF13840_consen    6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMISSE   44 (65)
T ss_dssp             EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEEES
T ss_pred             EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEEEe
Confidence            357888888    89999999999999999999999853

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=95.81  E-value=0.05  Score=56.87  Aligned_cols=66  Identities=12%  Similarity=0.067  Sum_probs=52.8

Q ss_pred             cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      ..++.|.|.+.||+|+++.|++++++.++||.+++.... ..+.+.+.+.+.+.+    .++|..-+..+-
T Consensus       608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~----~~~L~~ii~~L~  673 (683)
T TIGR00691       608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVEIKN----YKHLLKIMLKIK  673 (683)
T ss_pred             eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEEECC----HHHHHHHHHHHh
Confidence            456789999999999999999999999999999998653 246778888888874    556665555543

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.78  E-value=0.053  Score=40.37  Aligned_cols=62  Identities=18%  Similarity=0.228  Sum_probs=40.2

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530           45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (281)
Q Consensus        45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~-~g~F~mrlev~~p~~~~~~~~L~~~L~~la~  111 (281)
                      +.+.-+|+||-.+++-+.++++|+|+..+++.-.+. .+.|.--++++..     .+.++++++++.+
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~-----~~~~~~~l~~L~~   65 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVD-----RGDLDQLISSLRR   65 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcC-----hHHHHHHHHHHHH
Confidence            334458999999999999999999999999854222 2223222444432     2346666665543

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.77  E-value=0.023  Score=55.72  Aligned_cols=65  Identities=15%  Similarity=0.103  Sum_probs=47.8

Q ss_pred             CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 023530           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (281)
Q Consensus        39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~l  109 (281)
                      ...++.|.+.-.|+||+++.||+.|+++|+||..+.-...  .+.=.|.++++-+    ..+++.+.++++
T Consensus       335 ~~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~--~~~A~~iie~D~~----~~~~~~~~i~~i  399 (409)
T PRK11790        335 HPGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTD--GEIGYVVIDVDAD----YAEEALDALKAI  399 (409)
T ss_pred             CCCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccC--CCEEEEEEEeCCC----CcHHHHHHHHcC
Confidence            3477899999999999999999999999999999877543  2443455555532    244666666654

>PRK05092 PII uridylyl-transferase; Provisional

Probab=95.48  E-value=0.071  Score=57.54  Aligned_cols=70  Identities=11%  Similarity=0.027  Sum_probs=48.6

Q ss_pred             CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEE-EEEEEeCCCC--CC---HHHHHHHHHHHh
Q 023530           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYS-RSEFIFDPIK--WP---REQMDEDFFKLS  110 (281)
Q Consensus        39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~m-rlev~~p~~~--~~---~~~L~~~L~~la  110 (281)
                      ......|+|.|+||||+.+.|+++|+.+|+||.+.+-++.. .| |.+ .+.|.-+...  .+   .+.|++.|+...
T Consensus       729 ~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~-dg-~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l  804 (931)
T PRK05092        729 ARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTT-DG-RALDTFWIQDAFGRDEDEPRRLARLAKAIEDAL  804 (931)
T ss_pred             CCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEec-CC-eEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence            34567999999999999999999999999999999987642 33 322 2334322210  12   456777776554

>PRK05007 PII uridylyl-transferase; Provisional

Probab=95.46  E-value=0.03  Score=60.06  Aligned_cols=52  Identities=15%  Similarity=0.179  Sum_probs=40.9

Q ss_pred             CCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc--CCCCeEEE
Q 023530           35 SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP--EKKNVFYS   86 (281)
Q Consensus        35 ~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~--~~~g~F~m   86 (281)
                      .........+|.|.++||||+++.|+++|++.|+||....-.+.  .-...|+.
T Consensus       801 d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV  854 (884)
T PRK05007        801 LPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIL  854 (884)
T ss_pred             ccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEE
Confidence            33444577899999999999999999999999999999776653  12336664

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=95.39  E-value=0.026  Score=52.12  Aligned_cols=72  Identities=19%  Similarity=0.158  Sum_probs=55.7

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhc
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~  114 (281)
                      .+.+|.+.-.|-||++..|++.||.+|.||..+---.......|.|.+.+.-.+  .-+++.++.++++-.-+.
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd--~VveQa~rQiedlVnV~a  147 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTD--GVVEQARRQIEDLVNVYA  147 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccH--HHHHHHHHHHHHhhhhhe
Confidence            457889999999999999999999999999998765444566888888887443  236777777777654443

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=95.38  E-value=0.074  Score=51.27  Aligned_cols=71  Identities=15%  Similarity=-0.023  Sum_probs=46.6

Q ss_pred             CCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec---cCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV---PEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (281)
Q Consensus        37 ~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~---~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~  108 (281)
                      ......+.+++.=+||||..+++++.++++|+||+++....   ....+.-...+.++... ....+++.+.|++
T Consensus       300 ~~~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~-~~~~~~i~~~L~~  373 (380)
T TIGR01127       300 VKSGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG-KEHLDEILKILRD  373 (380)
T ss_pred             HhCCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC-HHHHHHHHHHHHH
Confidence            33456678999999999999999999999999999996542   11123333344444432 1233445555544

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK04374 PII uridylyl-transferase; Provisional

Probab=95.36  E-value=0.045  Score=58.72  Aligned_cols=58  Identities=17%  Similarity=0.140  Sum_probs=44.3

Q ss_pred             cccccCCCCcc-CCCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530           21 SFKSLKFPGEP-IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP   78 (281)
Q Consensus        21 ~~~~~~~~~~~-~~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~   78 (281)
                      +.+.-.|+..| |...........+|+|.++||||+.+.||++|+++|+||.+..-++.
T Consensus       774 ~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~  832 (869)
T PRK04374        774 PRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF  832 (869)
T ss_pred             cccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec
Confidence            44555666666 12222333467799999999999999999999999999999887764

>PRK03059 PII uridylyl-transferase; Provisional

Probab=95.04  E-value=0.17  Score=54.33  Aligned_cols=56  Identities=14%  Similarity=0.116  Sum_probs=42.8

Q ss_pred             cccCCCCccCC-CCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530           23 KSLKFPGEPIE-SSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP   78 (281)
Q Consensus        23 ~~~~~~~~~~~-~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~   78 (281)
                      +.-.|+..|.- ....+.....+|.|.++||||+.+.|+++|+++|+||.+..-++.
T Consensus       766 ~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~  822 (856)
T PRK03059        766 QVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL  822 (856)
T ss_pred             cccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec
Confidence            44456555533 223334467799999999999999999999999999999877764

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=94.91  E-value=0.28  Score=42.52  Aligned_cols=73  Identities=21%  Similarity=0.227  Sum_probs=54.4

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcc
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l  115 (281)
                      ++.++++.=.|.||.++.++..++++|.||..+.---....+  ..|+++-...+....+++.+.|..+-+-+++
T Consensus         3 m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~--~SRiTivv~g~~~~~EQi~kQL~kLidV~kV   75 (163)
T COG0440           3 MRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPG--LSRITIVVSGDEQVLEQIIKQLNKLIDVLKV   75 (163)
T ss_pred             ceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCC--ceEEEEEEcCCcchHHHHHHHHHhhccceeE
Confidence            667889999999999999999999999999998775433334  3355544433234578888888888765554

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=94.88  E-value=0.17  Score=36.00  Aligned_cols=65  Identities=18%  Similarity=0.134  Sum_probs=43.0

Q ss_pred             EEEEc-CCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhc
Q 023530           45 HVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (281)
Q Consensus        45 ltV~G-~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~  114 (281)
                      +++.| +|++|+.+++.+.|+++|+||.-+.|.... .+  .+.+.+.++.  .+.+...+.+.+..++++
T Consensus         4 v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~-~~--~~~is~~v~~--~d~~~~~~~l~~~~~~~~   69 (75)
T cd04913           4 ITLRGVPDKPGVAAKIFGALAEANINVDMIVQNVSR-DG--TTDISFTVPK--SDLKKALAVLEKLKKELG   69 (75)
T ss_pred             EEECCCCCCCcHHHHHHHHHHHcCCeEEEEEeCCCC-CC--cEEEEEEecH--HHHHHHHHHHHHHHHHcC
Confidence            44443 689999999999999999999988875432 22  2345555553  234555566666555554

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=94.85  E-value=0.059  Score=57.69  Aligned_cols=51  Identities=16%  Similarity=0.200  Sum_probs=40.3

Q ss_pred             CCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC--CCCeEEE
Q 023530           36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE--KKNVFYS   86 (281)
Q Consensus        36 ~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~--~~g~F~m   86 (281)
                      ........+|.|.++||||+++.|+++|++.|++|....-.+..  -...|+.
T Consensus       777 n~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv  829 (854)
T PRK01759        777 NEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFIL  829 (854)
T ss_pred             cCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEE
Confidence            33445678999999999999999999999999999997766531  1235664

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=94.84  E-value=0.051  Score=55.02  Aligned_cols=75  Identities=16%  Similarity=0.159  Sum_probs=51.2

Q ss_pred             CCCccCCCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHH
Q 023530           27 FPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDF  106 (281)
Q Consensus        27 ~~~~~~~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L  106 (281)
                      ..+-+++.+.    ..+.+-+...|+||+|+.|++.|+++++||-.++......++.-.|.++++-+   .+ +++-+.+
T Consensus       441 ing~~v~~~~----~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~---v~-~~~l~~i  512 (526)
T PRK13581        441 IDGYRVDAKP----EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDP---VP-EEVLEEL  512 (526)
T ss_pred             ECCEEEEeeC----CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCC---CC-HHHHHHH
Confidence            4444455444    45666677799999999999999999999999987654345566666666633   23 4444445


Q ss_pred             HHH
Q 023530          107 FKL  109 (281)
Q Consensus       107 ~~l  109 (281)
                      .++
T Consensus       513 ~~~  515 (526)
T PRK13581        513 RAL  515 (526)
T ss_pred             hcC
Confidence            443

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=94.82  E-value=0.16  Score=53.05  Aligned_cols=67  Identities=12%  Similarity=0.099  Sum_probs=54.7

Q ss_pred             CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      ....+.|.|.+.||+|+++.|+++|++.++||..+++..+ ..+.+.|.+.+.+.+    ..+|..-+..+-
T Consensus       624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n----~~~L~~i~~~l~  690 (701)
T COG0317         624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKN----LNHLGRVLARLK  690 (701)
T ss_pred             cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEECc----HHHHHHHHHHHh
Confidence            4467889999999999999999999999999999999765 456778888888875    556666555554

>PRK08818 prephenate dehydrogenase; Provisional

Probab=94.61  E-value=0.18  Score=49.12  Aligned_cols=51  Identities=16%  Similarity=0.057  Sum_probs=36.4

Q ss_pred             ccEEEEEEcC-CCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEe
Q 023530           41 THGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF   92 (281)
Q Consensus        41 ~~~iltV~G~-DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~   92 (281)
                      ..+.|.+.=+ |+||.+++|++.|+++|+||.+++..... .+.|..++++.-
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r-~~~y~f~i~~~~  345 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTP-AGELHFRIGFEP  345 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEeccc-CceEEEEEEEec
Confidence            4455555566 99999999999999999999999983222 233333455553

>PRK08198 threonine dehydratase; Provisional

Probab=94.59  E-value=0.11  Score=50.42  Aligned_cols=44  Identities=25%  Similarity=0.192  Sum_probs=37.7

Q ss_pred             CCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530           34 SSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV   77 (281)
Q Consensus        34 ~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~   77 (281)
                      .+.......+.+.|.=+|+||..+++.+.+++.|+||+++++.-
T Consensus       319 ~gl~~~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~  362 (404)
T PRK08198        319 RGLVAAGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDR  362 (404)
T ss_pred             hhhhhcCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEE
Confidence            34445566789999999999999999999999999999998853

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=94.52  E-value=0.19  Score=41.03  Aligned_cols=61  Identities=7%  Similarity=0.054  Sum_probs=40.7

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCC--eEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKN--VFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g--~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      ..+.+.-+|+||-.+.+-+.++++|+|+..+++.-.. ..+  .||+  +++..     .++++..++.+.
T Consensus        42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI--dieg~-----~~~~~~aL~~L~  105 (115)
T cd04930          42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV--RCEVH-----RSDLLQLISSLR  105 (115)
T ss_pred             EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE--EEEeC-----HHHHHHHHHHHH
Confidence            3444445999999999999999999999999985421 122  4454  44432     224666665554

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=94.49  E-value=0.052  Score=54.91  Aligned_cols=64  Identities=14%  Similarity=0.102  Sum_probs=46.9

Q ss_pred             CCCCccCCCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeC
Q 023530           26 KFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD   93 (281)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p   93 (281)
                      +..+-+++.+.    ..+.+-+...|+||+|+.|++.|+++++||-.++......+|.-.|.++++-+
T Consensus       439 ~ing~~v~~~~----~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~  502 (525)
T TIGR01327       439 EIDGFHVDLEP----EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQP  502 (525)
T ss_pred             EECCEEEEEec----CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCC
Confidence            44455555444    44566667799999999999999999999999887654445666667777643

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=94.41  E-value=0.23  Score=37.25  Aligned_cols=58  Identities=21%  Similarity=0.271  Sum_probs=40.6

Q ss_pred             EEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCC-CC--eEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530           47 FHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KN--VFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (281)
Q Consensus        47 V~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~-~g--~F~mrlev~~p~~~~~~~~L~~~L~~la~  111 (281)
                      +.-+|+||-.+++-+.++++|+|+..+++.-... .+  .||+.+  +..     .+.++.+++++.+
T Consensus         5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~--e~~-----~~~i~~~l~~l~~   65 (74)
T cd04929           5 FSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC--ECD-----QRRLDELVQLLKR   65 (74)
T ss_pred             EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC-----HHHHHHHHHHHHH
Confidence            3348999999999999999999999999864222 22  455443  322     2367777776654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11899 prephenate dehydratase; Provisional

Probab=94.13  E-value=0.41  Score=44.88  Aligned_cols=65  Identities=14%  Similarity=0.102  Sum_probs=43.9

Q ss_pred             cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCC--eEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKN--VFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (281)
Q Consensus        42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g--~F~mrlev~~p~~~~~~~~L~~~L~~la~  111 (281)
                      +..+.+.-+|+||-.+++-+.|+++|+|+..+++.=.. ..+  .|+  ++++.   ..+-..++++|+++.+
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~--id~eg---~~~d~~v~~aL~~l~~  261 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFY--ADIEG---HPEDRNVALALEELRF  261 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEE--EEEEC---CCCCHHHHHHHHHHHH
Confidence            33333444899999999999999999999999985321 122  344  34432   2234567888888754

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=94.05  E-value=2.9  Score=34.78  Aligned_cols=93  Identities=15%  Similarity=0.088  Sum_probs=58.3

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeE-EEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccceeeee
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVF-YSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRV  122 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F-~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~~~~~  122 (281)
                      -|++.-..|||=.+.+++.|.++|+||..++-   .++|.| ..||.++-|      ++-.+.|++.    |..   +++
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~ti---Adt~dFGIiRmvV~~~------d~A~~~Lee~----gF~---Vr~   68 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTI---ADTGDFGIIRMVVDRP------DEAHSVLEEA----GFT---VRE   68 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEe---ccccCcceEEEEcCCh------HHHHHHHHHC----CcE---EEe
Confidence            47788899999999999999999999999876   347777 457766633      3345555543    332   222


Q ss_pred             cCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCee
Q 023530          123 PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVE  157 (281)
Q Consensus       123 ~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~e  157 (281)
                      .+     =+||=+--....|..+++...+-+++.+
T Consensus        69 ~d-----VlaVEmeD~PG~l~~I~~vl~d~diNld   98 (142)
T COG4747          69 TD-----VLAVEMEDVPGGLSRIAEVLGDADINLD   98 (142)
T ss_pred             ee-----EEEEEecCCCCcHHHHHHHHhhcCcCce
Confidence            22     1344333333345556555555555444

>PRK06382 threonine dehydratase; Provisional

Probab=93.92  E-value=0.25  Score=48.26  Aligned_cols=71  Identities=17%  Similarity=0.079  Sum_probs=46.8

Q ss_pred             CCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec---cCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV---PEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (281)
Q Consensus        37 ~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~---~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~  108 (281)
                      ........++|.=+|+||.++++++.|+++|+||+++....   ....+.-.+.+.++..+ ....+++.+.|++
T Consensus       325 ~~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~-~~~~~~v~~~L~~  398 (406)
T PRK06382        325 ENLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRG-QDHLDRILNALRE  398 (406)
T ss_pred             HhcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCC-HHHHHHHHHHHHH
Confidence            34456788999999999999999999999999999987641   11223323344454431 1123355555544

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=93.85  E-value=0.48  Score=51.15  Aligned_cols=39  Identities=13%  Similarity=0.163  Sum_probs=35.3

Q ss_pred             cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP   78 (281)
Q Consensus        40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~   78 (281)
                      ....+|.|.++||||+.+.|+++|+++|+||.+..-.+.
T Consensus       812 ~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~  850 (895)
T PRK00275        812 RPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL  850 (895)
T ss_pred             CCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec
Confidence            356799999999999999999999999999999887764

>PRK05007 PII uridylyl-transferase; Provisional

Probab=93.69  E-value=0.34  Score=52.15  Aligned_cols=45  Identities=16%  Similarity=0.166  Sum_probs=37.5

Q ss_pred             CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeE
Q 023530           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVF   84 (281)
Q Consensus        39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F   84 (281)
                      ......|+|.++||||+.+.|+++|+.+|+||.+..-++.. .|..
T Consensus       698 ~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~-dg~a  742 (884)
T PRK05007        698 TRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSR-DGMA  742 (884)
T ss_pred             CCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcC-CCeE
Confidence            33567999999999999999999999999999999866542 3543

>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]

Probab=93.64  E-value=0.64  Score=42.29  Aligned_cols=80  Identities=26%  Similarity=0.305  Sum_probs=55.0

Q ss_pred             eeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCCh---------hHHHHHHhCCCCEEEeCCCC-CChH-HH
Q 023530          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNS---------HVIRFLERHGIPYHYLCAKE-NERE-EE  197 (281)
Q Consensus       129 ~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a---------~~~~~A~~~gIP~~~i~~k~-~~~e-~~  197 (281)
                      +|++.|.||+--...|+..+.+.|   .+|..+++=+|..+++         .+...|+..|||........ .++| ++
T Consensus         1 mk~~aL~SGGKDS~~Al~~a~~~G---~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~   77 (223)
T COG2102           1 MKVIALYSGGKDSFYALYLALEEG---HEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEEEREVEE   77 (223)
T ss_pred             CcEEEEEecCcHHHHHHHHHHHcC---CeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccchhhHHH
Confidence            478889998843356788888887   4787777666554432         24567899999998887333 1223 56


Q ss_pred             HHHHHh--CCCEEEEe
Q 023530          198 LLELVQ--NTDFLVLA  211 (281)
Q Consensus       198 l~~~L~--~~DlIVLA  211 (281)
                      +.++|+  ++|.||.-
T Consensus        78 L~~~l~~l~~d~iv~G   93 (223)
T COG2102          78 LKEALRRLKVDGIVAG   93 (223)
T ss_pred             HHHHHHhCcccEEEEc
Confidence            777787  78888763

>PRK06349 homoserine dehydrogenase; Provisional

Probab=93.47  E-value=0.39  Score=47.33  Aligned_cols=67  Identities=10%  Similarity=-0.034  Sum_probs=46.8

Q ss_pred             CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      ...+|.|.+...|+||.+++|++.|+++|+||..+.|.... .+.-.+.+..+    ..+..++++.++++.
T Consensus       345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~-~~~~~ivivT~----~~~e~~l~~~i~~L~  411 (426)
T PRK06349        345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAG-GEGAEIVIVTH----ETSEAALRAALAAIE  411 (426)
T ss_pred             hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCC-CCceeEEEEEE----eCCHHHHHHHHHHHh
Confidence            44679999999999999999999999999999999886432 12212222222    224456666665554

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=93.46  E-value=0.39  Score=51.49  Aligned_cols=50  Identities=12%  Similarity=0.145  Sum_probs=38.6

Q ss_pred             cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEE
Q 023530           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF   90 (281)
Q Consensus        40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev   90 (281)
                      .....|+|.++||||+.+.|+++|+.+|+||.+..-++. ..|.-.=.+.|
T Consensus       675 ~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~-~~g~alD~F~V  724 (854)
T PRK01759        675 RGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITS-QDGYVLDSFIV  724 (854)
T ss_pred             CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEc-cCCEEEEEEEE
Confidence            355689999999999999999999999999999886552 24443333334

>PRK06545 prephenate dehydrogenase; Validated

Probab=93.25  E-value=0.31  Score=46.75  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=33.6

Q ss_pred             cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeee
Q 023530           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (281)
Q Consensus        40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~   76 (281)
                      ...|.|.|.-|||||.+++|++.|++.|+||.|+.-.
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~  324 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRIL  324 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceee
Confidence            3668899999999999999999999999999998763

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=93.11  E-value=0.53  Score=35.26  Aligned_cols=32  Identities=13%  Similarity=0.099  Sum_probs=27.8

Q ss_pred             EEEE--E-cCCCcchHHHHHHHHHhCCCeEeEeee
Q 023530           44 IHVF--H-CPDEVGIVAKLSECIASRGGNILAADV   75 (281)
Q Consensus        44 iltV--~-G~DrpGIVa~VS~~La~~giNI~dl~q   75 (281)
                      .|++  . .++++|..++|-+.|+++|+||.-+.|
T Consensus         3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~   37 (75)
T cd04932           3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT   37 (75)
T ss_pred             EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee
Confidence            4565  2 478899999999999999999999987

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=93.05  E-value=0.89  Score=30.95  Aligned_cols=34  Identities=18%  Similarity=0.186  Sum_probs=30.1

Q ss_pred             EEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530           44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV   77 (281)
Q Consensus        44 iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~   77 (281)
                      .|++.|.   +++|+++++.+.|+++++++.-..|..
T Consensus         2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~   38 (65)
T cd04892           2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS   38 (65)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence            5788776   889999999999999999999998843

This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=93.00  E-value=1.3  Score=47.44  Aligned_cols=102  Identities=15%  Similarity=0.133  Sum_probs=72.8

Q ss_pred             ccEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530           41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (281)
Q Consensus        41 ~~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~  117 (281)
                      .-.+|+++|.   +++|+.+++-+.|++.|+||.-++|...   +.   .+.+-++     .++..++++.+-++|-.  
T Consensus       395 ~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsS---e~---~Is~vV~-----~~d~~~al~~LH~~f~~--  461 (819)
T PRK09436        395 NLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSS---ER---SISVVID-----NDDATKALRACHQSFFL--  461 (819)
T ss_pred             CEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccc---cc---eEEEEEc-----HHHHHHHHHHHHHHHhc--
Confidence            5578999997   7899999999999999999999998542   21   2233333     34567777777777643  


Q ss_pred             eeeeecCCCCCeeEEEEeeCC-hhHHHHHHHhhh----cCCCCeeEEEEE
Q 023530          118 SVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQ----EGKLPVEITCVI  162 (281)
Q Consensus       118 ~~~~~~~~~~~~rIavl~Sg~-GsnL~aLl~~~~----~g~l~~eI~~Vi  162 (281)
                             ..++++|++++-|+ |..+-.++...+    ...+..+|++|.
T Consensus       462 -------~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~  504 (819)
T PRK09436        462 -------SDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIA  504 (819)
T ss_pred             -------ccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEE
Confidence                   24678999999998 788877775422    123456777763

>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]

Probab=92.86  E-value=0.73  Score=45.83  Aligned_cols=69  Identities=16%  Similarity=0.035  Sum_probs=46.5

Q ss_pred             CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccce---eeeecCCCCCeeEEEEeeCChhHHHHHHHhhhc
Q 023530           80 KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS---VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQE  151 (281)
Q Consensus        80 ~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~---~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~  151 (281)
                      ..|.|...++-.-|+   ...+|...|+++-++|..+..   ..+.+-+..+.+|+|..|.+|..++|++..+++
T Consensus        87 ~rG~YQi~~~~~~p~---G~G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tgAairDIl~~~~r  158 (440)
T COG1570          87 PRGDYQIVAESMEPA---GLGALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTGAALRDILHTLSR  158 (440)
T ss_pred             CCCceEEEEecCCcC---ChhHHHHHHHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCchHHHHHHHHHHHh
Confidence            467776655544454   467888888887666554431   122223344679999999999999999987654

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.84  E-value=0.24  Score=52.50  Aligned_cols=55  Identities=20%  Similarity=0.265  Sum_probs=44.2

Q ss_pred             cccCCCCcc-CCCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530           23 KSLKFPGEP-IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV   77 (281)
Q Consensus        23 ~~~~~~~~~-~~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~   77 (281)
                      ++--||..| ++-.+......+++.|.|.||||++++|++.|++++++|....-.+
T Consensus       771 ~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT  826 (867)
T COG2844         771 KLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITT  826 (867)
T ss_pred             ccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeecc
Confidence            334566655 4445555557899999999999999999999999999999987665

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=92.80  E-value=0.49  Score=51.06  Aligned_cols=50  Identities=12%  Similarity=0.075  Sum_probs=39.1

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~   91 (281)
                      .-..|+|.++||||+-+.++.+|+.+|+||.+.+-++. ..|...=.+.|.
T Consensus       703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt-~dg~alD~F~V~  752 (895)
T PRK00275        703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITS-SSQFTLDTYIVL  752 (895)
T ss_pred             CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEc-CCCeEEEEEEEe
Confidence            45689999999999999999999999999999987654 245433344443

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=92.69  E-value=0.53  Score=40.79  Aligned_cols=48  Identities=21%  Similarity=-0.036  Sum_probs=34.2

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~   91 (281)
                      .++..-.+.|||+|+|++.++++||+|.+.-..-...++.=+.++..+
T Consensus        97 ei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte  144 (167)
T COG2150          97 EIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTE  144 (167)
T ss_pred             EEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEe
Confidence            344445788999999999999999999987664322344334455555

>PRK04374 PII uridylyl-transferase; Provisional

Probab=92.64  E-value=0.6  Score=50.27  Aligned_cols=70  Identities=14%  Similarity=0.226  Sum_probs=48.0

Q ss_pred             CCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCC---CHHHHHHHHHHH
Q 023530           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKW---PREQMDEDFFKL  109 (281)
Q Consensus        38 ~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~---~~~~L~~~L~~l  109 (281)
                      +......++|.++||||+-+.|+.+|+.+|+||.+.+-++.. .|.-.=.+.|.-+. +.   ....+++++...
T Consensus       686 ~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~-~g~~ld~f~V~~~~-~~~~~~~~~i~~~l~~~  758 (869)
T PRK04374        686 PDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAP-HDAIFDVFEVLPQD-TYADGDPQRLAAALRQV  758 (869)
T ss_pred             cCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcC-CCEEEEEEEEeCCC-CCChHHHHHHHHHHHHH
Confidence            334557899999999999999999999999999999887642 45433344444333 21   133455555543

>PRK03059 PII uridylyl-transferase; Provisional

Probab=92.56  E-value=0.8  Score=49.22  Aligned_cols=52  Identities=15%  Similarity=0.148  Sum_probs=40.0

Q ss_pred             CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 023530           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (281)
Q Consensus        39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~   91 (281)
                      ......|+|.++||||+-+.+|.+|+.+|+||.+.+-++.. .|.-.=.+.|.
T Consensus       675 ~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~-~g~~ld~f~V~  726 (856)
T PRK03059        675 AGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTR-HGYALDTFQVL  726 (856)
T ss_pred             CCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcC-CCeEEEEEEEe
Confidence            33556899999999999999999999999999999887642 44322234443

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=92.52  E-value=0.39  Score=45.58  Aligned_cols=73  Identities=21%  Similarity=0.228  Sum_probs=46.5

Q ss_pred             CCeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHH--Hh
Q 023530          127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL--VQ  203 (281)
Q Consensus       127 ~~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~--L~  203 (281)
                      +++||||+++|+ |+.+..-+.+  ..  ..++++|+.-.   ++..++++|+++|+|+.+-     .. +++++.  .+
T Consensus         3 ~klrVAIIGtG~IGt~hm~~l~~--~~--~velvAVvdid---~es~gla~A~~~Gi~~~~~-----~i-e~LL~~~~~~   69 (302)
T PRK08300          3 SKLKVAIIGSGNIGTDLMIKILR--SE--HLEPGAMVGID---PESDGLARARRLGVATSAE-----GI-DGLLAMPEFD   69 (302)
T ss_pred             CCCeEEEEcCcHHHHHHHHHHhc--CC--CcEEEEEEeCC---hhhHHHHHHHHcCCCcccC-----CH-HHHHhCcCCC
Confidence            468999999998 5553222222  22  36899888765   4556778899999987651     11 234432  12


Q ss_pred             CCCEEEEec
Q 023530          204 NTDFLVLAR  212 (281)
Q Consensus       204 ~~DlIVLAg  212 (281)
                      ++|+|+.|-
T Consensus        70 dIDiVf~AT   78 (302)
T PRK08300         70 DIDIVFDAT   78 (302)
T ss_pred             CCCEEEECC
Confidence            678887764

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=92.39  E-value=0.68  Score=49.56  Aligned_cols=39  Identities=21%  Similarity=0.190  Sum_probs=35.2

Q ss_pred             cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP   78 (281)
Q Consensus        40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~   78 (281)
                      .....|+|.++||||+.+.|+++|+.+|+||.+.+-++.
T Consensus       666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt  704 (850)
T TIGR01693       666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTT  704 (850)
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEe
Confidence            456789999999999999999999999999999988743

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=92.36  E-value=1.2  Score=31.24  Aligned_cols=33  Identities=21%  Similarity=0.122  Sum_probs=29.3

Q ss_pred             EEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeee
Q 023530           44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVF   76 (281)
Q Consensus        44 iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~   76 (281)
                      .+++.|.   |.+|+.+++.+.|++.|+|+.-+.|.
T Consensus         3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~   38 (66)
T cd04922           3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQG   38 (66)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence            5778884   88999999999999999999988874

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>TIGR00289 conserved hypothetical protein TIGR00289

Probab=92.35  E-value=1.4  Score=40.06  Aligned_cols=102  Identities=21%  Similarity=0.161  Sum_probs=62.5

Q ss_pred             eeEEEEeeCCh-hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC---------hhHHHHHHhCCCCEEEeCCCC-CChH-H
Q 023530          129 YKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCAKE-NERE-E  196 (281)
Q Consensus       129 ~rIavl~Sg~G-snL~aLl~~~~~g~l~~eI~~Visn~pd~~~---------a~~~~~A~~~gIP~~~i~~k~-~~~e-~  196 (281)
                      ||++++.||+- |++ +++.+.+.    .+|+++++..++..+         .-+...|+..|||.+.+.... ...+ +
T Consensus         1 Mkv~vl~SGGKDS~l-Al~~~~~~----~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~~e~~~~   75 (222)
T TIGR00289         1 MKVAVLYSGGKDSIL-ALYKALEE----HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGEEEKEVE   75 (222)
T ss_pred             CeEEEEecCcHHHHH-HHHHHHHc----CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCchhHHHH
Confidence            48999999984 554 56655554    377777776654211         235678999999988766222 1112 4


Q ss_pred             HHHHHHh--CCCEEEEecccccCChhHHhhhcCCcee-----ccCCCCCC
Q 023530          197 ELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE-----SLSSKGSL  239 (281)
Q Consensus       197 ~l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN-----SLLP~f~G  239 (281)
                      ++.+.++  ++|-||.   +=|.+.. -+.|..++.+     ++.|.|+-
T Consensus        76 ~l~~~l~~~gv~~vv~---GdI~s~~-qr~~~e~vc~~~gl~~~~PLW~~  121 (222)
T TIGR00289        76 DLAGQLGELDVEALCI---GAIESNY-QKSRIDKVCRELGLKSIAPLWHA  121 (222)
T ss_pred             HHHHHHHHcCCCEEEE---CccccHH-HHHHHHHHHHHcCCEEeccccCC
Confidence            5666666  7888875   4455543 2333333444     88898854

Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.

>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily

Probab=92.00  E-value=1.5  Score=38.79  Aligned_cols=102  Identities=21%  Similarity=0.236  Sum_probs=61.1

Q ss_pred             eEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC---------hhHHHHHHhCCCCEEEeCC-CCC-ChHHH
Q 023530          130 KVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCA-KEN-EREEE  197 (281)
Q Consensus       130 rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~---------a~~~~~A~~~gIP~~~i~~-k~~-~~e~~  197 (281)
                      |++++.||+ +|++- +..+.+.|   .+|.++++..|..++         ..+...|+..|||.+.++. ... .+.+.
T Consensus         1 kv~v~~SGGkDS~~a-l~~a~~~G---~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~   76 (194)
T cd01994           1 KVVALISGGKDSCYA-LYRALEEG---HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEEEDEVED   76 (194)
T ss_pred             CEEEEecCCHHHHHH-HHHHHHcC---CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHH
Confidence            688999998 45554 44444555   477777766432211         2456789999999998872 211 22345


Q ss_pred             HHHHHh-----CCCEEEEecccccCChhHHhhhcCCcee-----ccCCCCCC
Q 023530          198 LLELVQ-----NTDFLVLARYMQPVPLQKEAYLGYKLLE-----SLSSKGSL  239 (281)
Q Consensus       198 l~~~L~-----~~DlIVLAgYMrILs~~fl~~~~~riIN-----SLLP~f~G  239 (281)
                      +.+.|+     +++.||   ++-|.++. .+.|..++.+     ++.|.|+-
T Consensus        77 l~~~l~~~~~~g~~~vv---~G~i~sd~-~~~~~e~~~~~~gl~~~~PLW~~  124 (194)
T cd01994          77 LKELLRKLKEEGVDAVV---FGAILSEY-QRTRVERVCERLGLEPLAPLWGR  124 (194)
T ss_pred             HHHHHHHHHHcCCCEEE---ECccccHH-HHHHHHHHHHHcCCEEEecccCC
Confidence            555554     266555   34555543 4444444555     88898854

Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.

>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain

Probab=91.89  E-value=1.4  Score=39.98  Aligned_cols=103  Identities=17%  Similarity=0.127  Sum_probs=64.5

Q ss_pred             eeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC---------hhHHHHHHhCCCCEEEeCCC-CC-ChHHH
Q 023530          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCAK-EN-EREEE  197 (281)
Q Consensus       129 ~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~---------a~~~~~A~~~gIP~~~i~~k-~~-~~e~~  197 (281)
                      ||++++.||+--+..+|+.+.+.    .+|+++++-.|...+         .-+...|+..|||.+.++.. .. ...++
T Consensus         1 Mk~~~l~SGGKDS~~al~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~   76 (223)
T TIGR00290         1 MKVAALISGGKDSCLALYHALKE----HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEE   76 (223)
T ss_pred             CcEEEEecCcHHHHHHHHHHHHh----CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHH
Confidence            47888999985555678777665    367666655543221         23456799999998876522 11 22356


Q ss_pred             HHHHHh--CCCEEEEecccccCChhHHhhhcCCcee-----ccCCCCCC
Q 023530          198 LLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE-----SLSSKGSL  239 (281)
Q Consensus       198 l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN-----SLLP~f~G  239 (281)
                      +.+.|+  ++|.||.   +=|.+.. ...|..++.+     ++.|.|+-
T Consensus        77 l~~~l~~~gv~~vv~---GdI~s~~-qr~~~e~v~~~lgl~~~~PLW~~  121 (223)
T TIGR00290        77 LKGILHTLDVEAVVF---GAIYSEY-QKTRIERVCRELGLKSFAPLWHR  121 (223)
T ss_pred             HHHHHHHcCCCEEEE---CCcccHH-HHHHHHHHHHhcCCEEeccccCC
Confidence            777777  7888774   4455544 3444444555     88888854

Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.

>PRK08526 threonine dehydratase; Provisional

Probab=91.87  E-value=0.67  Score=45.48  Aligned_cols=42  Identities=14%  Similarity=0.111  Sum_probs=36.6

Q ss_pred             CCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530           36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV   77 (281)
Q Consensus        36 ~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~   77 (281)
                      .-.....+.+.+.=|||||-.+++++.+++.+.||.+++...
T Consensus       320 l~~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r  361 (403)
T PRK08526        320 LIKSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDR  361 (403)
T ss_pred             HHhcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEe
Confidence            344567788999999999999999999999999999998744

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=91.87  E-value=0.75  Score=34.98  Aligned_cols=32  Identities=22%  Similarity=0.262  Sum_probs=27.0

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeee
Q 023530           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (281)
Q Consensus        43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~   76 (281)
                      .++.|.=|||||-.+++++.|+  +.||.+....
T Consensus         2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~   33 (85)
T cd04906           2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYR   33 (85)
T ss_pred             eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEE
Confidence            3577888999999999999999  7788877664

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]

Probab=91.67  E-value=1.4  Score=34.03  Aligned_cols=68  Identities=9%  Similarity=-0.035  Sum_probs=56.5

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~  111 (281)
                      +.|.+++...++|+.+..|-++...+|.-+-.++.+....+|.-...+.|+.+   -+++.|...|+++-+
T Consensus         2 ~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~---R~~~lL~~QLeKl~D   69 (86)
T COG3978           2 MQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD---RSVDLLTSQLEKLYD   69 (86)
T ss_pred             ceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC---CChHHHHHHHHHHcc
Confidence            67999999999999999999999999999999988765456766666666654   478999999988753

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=91.44  E-value=1.8  Score=30.39  Aligned_cols=35  Identities=17%  Similarity=0.134  Sum_probs=30.2

Q ss_pred             EEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530           43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV   77 (281)
Q Consensus        43 ~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~   77 (281)
                      ..+++.|.   +++|+.+++.+.|+++|+|+.-+.|..
T Consensus         2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~   39 (66)
T cd04919           2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA   39 (66)
T ss_pred             eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence            35778887   789999999999999999999988843

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

Probab=91.38  E-value=1.9  Score=30.05  Aligned_cols=35  Identities=9%  Similarity=0.135  Sum_probs=30.3

Q ss_pred             EEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530           43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV   77 (281)
Q Consensus        43 ~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~   77 (281)
                      ..++++|.   +++|+.+++-+.|+++|+|+.-+.|..
T Consensus         2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~   39 (66)
T cd04924           2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS   39 (66)
T ss_pred             eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence            46788886   789999999999999999999988843

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=91.35  E-value=1.9  Score=30.65  Aligned_cols=33  Identities=18%  Similarity=0.214  Sum_probs=28.2

Q ss_pred             EEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeee
Q 023530           43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADV   75 (281)
Q Consensus        43 ~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q   75 (281)
                      ..++++|.   ++||+.+++-+.|+++|+|+.-..+
T Consensus         2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~   37 (64)
T cd04937           2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTAD   37 (64)
T ss_pred             eEEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEc
Confidence            36888997   8899999999999999999974443

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=91.24  E-value=1.1  Score=42.13  Aligned_cols=51  Identities=22%  Similarity=0.272  Sum_probs=36.0

Q ss_pred             CeeEEEEeeCC-hhHH-HHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEE
Q 023530          128 KYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY  186 (281)
Q Consensus       128 ~~rIavl~Sg~-GsnL-~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~  186 (281)
                      ++||||+++|+ |+.+ ..++.   ..  ..++++|..-.   +++..+++|+++|+|+..
T Consensus         1 klrVAIIG~G~IG~~h~~~ll~---~~--~~elvaV~d~d---~es~~la~A~~~Gi~~~~   53 (285)
T TIGR03215         1 KVKVAIIGSGNIGTDLMYKLLR---SE--HLEMVAMVGID---PESDGLARARELGVKTSA   53 (285)
T ss_pred             CcEEEEEeCcHHHHHHHHHHHh---CC--CcEEEEEEeCC---cccHHHHHHHHCCCCEEE
Confidence            46899999988 5543 44443   22  36888887754   455567899999999776

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=90.97  E-value=1.1  Score=33.19  Aligned_cols=32  Identities=19%  Similarity=0.184  Sum_probs=27.4

Q ss_pred             EEEEEc---CCCcchHHHHHHHHHhCCCeEeEeee
Q 023530           44 IHVFHC---PDEVGIVAKLSECIASRGGNILAADV   75 (281)
Q Consensus        44 iltV~G---~DrpGIVa~VS~~La~~giNI~dl~q   75 (281)
                      .+++.|   .+.+|+++++-+.|+++|+|+.-+.+
T Consensus         3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~   37 (75)
T cd04912           3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIST   37 (75)
T ss_pred             EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEc
Confidence            567755   57899999999999999999988865

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional

Probab=90.65  E-value=2.3  Score=38.83  Aligned_cols=79  Identities=23%  Similarity=0.348  Sum_probs=50.6

Q ss_pred             HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCCh--hHHHHHHHhhhc-CCCCeeEEEEEeCCCCC--CChhHHH
Q 023530          101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQE-GKLPVEITCVISNHDRG--PNSHVIR  175 (281)
Q Consensus       101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~G--snL~aLl~~~~~-g~l~~eI~~Visn~pd~--~~a~~~~  175 (281)
                      .+.+.+.+...+++|-         ....||+|.+||+.  .+|-.++...+. ...+.++.+|-.|+--+  ....+.+
T Consensus        11 ~~~~~v~~~i~~~~li---------~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~~~~~~   81 (258)
T PRK10696         11 RLRRQVGQAIADFNMI---------EEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPEHVLPE   81 (258)
T ss_pred             HHHHHHHHHHHHcCCC---------CCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCHHHHHH
Confidence            3555555555566542         23448999999984  566666655432 22346888888776221  1124678


Q ss_pred             HHHhCCCCEEEeC
Q 023530          176 FLERHGIPYHYLC  188 (281)
Q Consensus       176 ~A~~~gIP~~~i~  188 (281)
                      +|+++|||+++++
T Consensus        82 ~~~~lgI~~~v~~   94 (258)
T PRK10696         82 YLESLGVPYHIEE   94 (258)
T ss_pred             HHHHhCCCEEEEE
Confidence            9999999998865

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=90.61  E-value=0.59  Score=45.04  Aligned_cols=51  Identities=12%  Similarity=0.186  Sum_probs=34.1

Q ss_pred             CCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCE
Q 023530          127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY  184 (281)
Q Consensus       127 ~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~  184 (281)
                      .+.||+|.+++-|.+.-.-+.+.  ++ .+++++|.+..    ...+.+.|+++|||.
T Consensus         2 ~~~rVgViG~~~G~~h~~al~~~--~~-~~eLvaV~d~~----~erA~~~A~~~gi~~   52 (343)
T TIGR01761         2 DVQSVVVCGTRFGQFYLAAFAAA--PE-RFELAGILAQG----SERSRALAHRLGVPL   52 (343)
T ss_pred             CCcEEEEEeHHHHHHHHHHHHhC--CC-CcEEEEEEcCC----HHHHHHHHHHhCCCc
Confidence            46799999996664322222221  21 37999998865    245788999999983

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=90.09  E-value=7.7  Score=42.81  Aligned_cols=159  Identities=15%  Similarity=0.145  Sum_probs=80.8

Q ss_pred             EEEEEEc--CCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhc-c---
Q 023530           43 GIHVFHC--PDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN-A---  115 (281)
Q Consensus        43 ~iltV~G--~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~-l---  115 (281)
                      ..+.+.|  -|. ||+.++=+.+...|+...=....+.. ....=...+++..++ ...++++.+.|..++..-. .   
T Consensus       462 ~~v~l~ghl~d~-~lin~~ld~i~~~gg~~~~~~~~~gqs~~~~S~~~l~v~a~d-~~~L~~i~~~l~~la~~~~~~~~~  539 (1042)
T PLN02819        462 ILVSLSGHLFDK-FLINEALDVIEAAGGSFHLAKCQVGQSADAESYSELEVGADD-KEVLDQIIDSLTRLANPNEDYISP  539 (1042)
T ss_pred             EEEEeeeecccc-hhhhhhhhhhhccCCceeeeeeccccCcccccceeeecccCc-HHHHHHHHHHHHHhcccccccccc
Confidence            3444444  355 99999999998888765554443321 111223456666543 3344555555555553110 0   


Q ss_pred             ---------------cceee--eecCCCCCeeEEEEeeCC-hhHHHHHHHhhhcCCC---------CeeEEEEEeCCCCC
Q 023530          116 ---------------MRSVV--RVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKL---------PVEITCVISNHDRG  168 (281)
Q Consensus       116 ---------------~~~~~--~~~~~~~~~rIavl~Sg~-GsnL~aLl~~~~~g~l---------~~eI~~Visn~pd~  168 (281)
                                     ..+.-  ......+++||+|+++|. |+..-..+.+.  ++.         ...+..+|++. + 
T Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIlVLGAG~VG~~~a~~La~~--~~~~~~~~~~~~~~~~lV~VaD~-~-  615 (1042)
T PLN02819        540 AREANKIFLKIGKVQQENECNEKAEVTKKSQNVLILGAGRVCRPAAEYLASV--KTISYYGDDSEEPTDVHVIVASL-Y-  615 (1042)
T ss_pred             chhhhhhhhhhhcccccccccccccccccCCcEEEECCCHHHHHHHHHHHhC--cCccccccccccccccEEEEECC-C-
Confidence                           00000  001124578999999998 54333333321  211         11223455553 1 


Q ss_pred             CChhHHHHHHhC-CCCEEEeCCCCCChHHHHHHHHhCCCEEEEe
Q 023530          169 PNSHVIRFLERH-GIPYHYLCAKENEREEELLELVQNTDFLVLA  211 (281)
Q Consensus       169 ~~a~~~~~A~~~-gIP~~~i~~k~~~~e~~l~~~L~~~DlIVLA  211 (281)
                       ...+.+.|+.+ ++.+..++.   .+.+++.+.++++|+||.|
T Consensus       616 -~~~a~~la~~~~~~~~v~lDv---~D~e~L~~~v~~~DaVIsa  655 (1042)
T PLN02819        616 -LKDAKETVEGIENAEAVQLDV---SDSESLLKYVSQVDVVISL  655 (1042)
T ss_pred             -HHHHHHHHHhcCCCceEEeec---CCHHHHHHhhcCCCEEEEC
Confidence             23455666666 766666641   1234566666677777765

>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal

Probab=89.79  E-value=1.5  Score=39.66  Aligned_cols=103  Identities=15%  Similarity=0.144  Sum_probs=56.1

Q ss_pred             eeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC---------hhHHHHHHhCCCCEEEeC-CCC-CChHHH
Q 023530          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLC-AKE-NEREEE  197 (281)
Q Consensus       129 ~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~---------a~~~~~A~~~gIP~~~i~-~k~-~~~e~~  197 (281)
                      ||++++-||+--+..+|..+.+.    .+|++.+|-.|...+         .-+..-|+..|||.+.++ +.. ..+.++
T Consensus         1 Mk~v~l~SGGKDS~lAl~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~~~~~~~~   76 (218)
T PF01902_consen    1 MKVVALWSGGKDSCLALYRALRQ----HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGDEEDYVED   76 (218)
T ss_dssp             -EEEEE--SSHHHHHHHHHHHHT-----EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---CCCHHHH
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHh----CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCccchhhHH
Confidence            68999999984344467777665    467666554332222         235667899999999887 321 234467


Q ss_pred             HHHHHh--CCCEEEEecccccCChhHHhhhcCCcee-----ccCCCCCC
Q 023530          198 LLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE-----SLSSKGSL  239 (281)
Q Consensus       198 l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN-----SLLP~f~G  239 (281)
                      +.+.|+  ++|.||.   +=|.+..- +.|..++.+     ++.|.|+=
T Consensus        77 l~~~l~~~~v~~vv~---GdI~~~~~-r~~~e~vc~~lGl~~~~PLW~~  121 (218)
T PF01902_consen   77 LKEALKELKVEAVVF---GDIDSEYQ-RNWVERVCERLGLEAVFPLWGR  121 (218)
T ss_dssp             HHHHHCTC--SEEE-----TTS-HHH-HHHHHHHHHHCT-EEE-TTTT-
T ss_pred             HHHHHHHcCCCEEEE---CcCCcHHH-HHHHHHHHHHcCCEEEecccCC
Confidence            888887  7887764   45555543 445545555     88898864

The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=89.28  E-value=3.3  Score=38.95  Aligned_cols=64  Identities=17%  Similarity=0.205  Sum_probs=42.7

Q ss_pred             cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCC--eEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKN--VFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g--~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      +-.|-+.=+|+||-++++-+.|+.+|+|+..+++.=.. .-|  .||  ++++-   ..+-..++++|+++.
T Consensus       194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~--iD~eg---~~~~~~v~~AL~el~  260 (279)
T COG0077         194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFF--IDIEG---HIDDPLVKEALEELK  260 (279)
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEE--EEEec---CcCcHhHHHHHHHHH
Confidence            33333444599999999999999999999999884311 122  344  44442   223467788887765

>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]

Probab=89.26  E-value=4  Score=35.03  Aligned_cols=58  Identities=21%  Similarity=0.277  Sum_probs=38.1

Q ss_pred             eEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC-----hhHHHHHHhCCCCEEEeC
Q 023530          130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC  188 (281)
Q Consensus       130 rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~-----a~~~~~A~~~gIP~~~i~  188 (281)
                      ||+|-+||+.  ..|-.++..++. ..+.++.+|..||.-++.     ..+.++|+++|||+++..
T Consensus         1 ki~va~SGG~DS~~Ll~~l~~~~~-~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~   65 (182)
T PF01171_consen    1 KILVAVSGGKDSMALLHLLKELRR-RNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVR   65 (182)
T ss_dssp             EEEEE--SSHHHHHHHHHHHHHHT-TTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHHH-hcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEE
Confidence            7899999973  555556655543 334588888888743333     257889999999999877

The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=88.90  E-value=2.4  Score=41.49  Aligned_cols=64  Identities=9%  Similarity=0.053  Sum_probs=43.1

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCC--eEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKN--VFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g--~F~mrlev~~p~~~~~~~~L~~~L~~la~  111 (281)
                      ..+++++  +|+||-.+++-+.|+.+|+|+..+++.=.+ ..+  .||+-++..     ..-..++++|+++.+
T Consensus       298 tsl~~~~--~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~-----~~d~~~~~aL~~l~~  364 (386)
T PRK10622        298 TTLLMAT--GQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQAN-----LRSAEMQKALKELGE  364 (386)
T ss_pred             EEEEEEc--CCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCC-----CCCHHHHHHHHHHHH
Confidence            3344444  799999999999999999999999985211 122  455333332     233567788877754

>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=88.75  E-value=11  Score=32.55  Aligned_cols=105  Identities=13%  Similarity=0.025  Sum_probs=71.6

Q ss_pred             cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccce
Q 023530           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS  118 (281)
Q Consensus        40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~-~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~  118 (281)
                      ++.+.+.+.=+|+||-.-.|-+=|++.|+||+.+-.+.+.. ++.--.++.|+...    .+..++-.+.+ ++.|... 
T Consensus         3 ~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~----~~~~~~i~~~~-e~~Gi~I-   76 (170)
T COG2061           3 QMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDR----EDKDAKIIRLL-EEEGIII-   76 (170)
T ss_pred             ceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecc----cHHHHHHHHHH-HhCCcEE-
Confidence            36788899999999999999999999999999987655433 45666677777542    23334444444 6777653 


Q ss_pred             eeeecCCCCCeeEEEEeeCC--hhHHHHHHHhhhc
Q 023530          119 VVRVPDIDPKYKVAVLASKQ--EHCLVDFLYGWQE  151 (281)
Q Consensus       119 ~~~~~~~~~~~rIavl~Sg~--GsnL~aLl~~~~~  151 (281)
                       .+++....+-++-+..=|.  .+++++=++++..
T Consensus        77 -~~~dg~~~~~~~~vvLIGhiv~tdiqDTId~In~  110 (170)
T COG2061          77 -IRFDGARLREKTDVVLIGHIVHTDIQDTIDRINS  110 (170)
T ss_pred             -EEecCcCcceeEeEEEEEeeecCcHHHHHHHhhc
Confidence             3444444344444444444  4899999998765

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=88.44  E-value=1.4  Score=44.61  Aligned_cols=32  Identities=16%  Similarity=0.361  Sum_probs=30.2

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeee
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADV   75 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q   75 (281)
                      .|.|.|.||.||+.+|.+.|+.+++|+..++.
T Consensus         2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~   33 (520)
T PRK10820          2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEI   33 (520)
T ss_pred             eEEEEeeccccHHHHHHHHHHhcCCCccEEEE
Confidence            57899999999999999999999999999887

>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.17  E-value=2  Score=35.73  Aligned_cols=54  Identities=20%  Similarity=0.318  Sum_probs=39.1

Q ss_pred             EEEEEeCCCCCCC------hhHHHHHHhCCCCEEEeC-CCC--CChH-HHHHHHHhCCCEEEEe
Q 023530          158 ITCVISNHDRGPN------SHVIRFLERHGIPYHYLC-AKE--NERE-EELLELVQNTDFLVLA  211 (281)
Q Consensus       158 I~~Visn~pd~~~------a~~~~~A~~~gIP~~~i~-~k~--~~~e-~~l~~~L~~~DlIVLA  211 (281)
                      ...||+|+||..+      +...++|++.|+++.++| ...  ++.+ +.+.++|.+.+-=|||
T Consensus        29 FksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~eaegPVla   92 (130)
T COG3453          29 FKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDEAEGPVLA   92 (130)
T ss_pred             cceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHHhCCCEEe
Confidence            6779999998732      457889999999999999 332  2222 4566777777777775

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=88.17  E-value=7.9  Score=41.56  Aligned_cols=101  Identities=3%  Similarity=0.009  Sum_probs=70.5

Q ss_pred             ccEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530           41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (281)
Q Consensus        41 ~~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~  117 (281)
                      .-.+|+++|.   .++|+.+++-+.|++.++|+....+     ++.   .+.+-++     .++..+++..+-++|-.  
T Consensus       390 ~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~~~-----s~~---sis~vV~-----~~d~~~av~~LH~~f~~--  454 (810)
T PRK09466        390 GLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQSE-----DGL---SLVAVLR-----QGPTESLIQGLHQSLFR--  454 (810)
T ss_pred             CeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEEeC-----CCc---EEEEEEe-----hHHHHHHHHHHHHHHhC--
Confidence            4578999996   6899999999999999999977665     222   2333333     35567777777776622  


Q ss_pred             eeeeecCCCCCeeEEEEeeCC-hhHHHHHHHhhhc-----CCCCeeEEEEEe
Q 023530          118 SVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQE-----GKLPVEITCVIS  163 (281)
Q Consensus       118 ~~~~~~~~~~~~rIavl~Sg~-GsnL~aLl~~~~~-----g~l~~eI~~Vis  163 (281)
                             ..+..+|++++-|+ |..+..+|...+.     -.++.+|++|..
T Consensus       455 -------~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~  499 (810)
T PRK09466        455 -------AEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVD  499 (810)
T ss_pred             -------cCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence                   23568999999998 7888777765321     234567787753

>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=88.10  E-value=2.3  Score=38.71  Aligned_cols=55  Identities=22%  Similarity=0.306  Sum_probs=38.3

Q ss_pred             CCCeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEE
Q 023530          126 DPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY  186 (281)
Q Consensus       126 ~~~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~  186 (281)
                      .+|.|++|.+||+ |+.|.  ++-.+.|+ ..|..+.+.=.   |.+.++.+|.+.|+|+-+
T Consensus         2 ~sk~kvaiigsgni~tdlm--~k~lr~g~-~le~~~mvgid---p~sdglaraarlgv~tt~   57 (310)
T COG4569           2 SSKRKVAIIGSGNIGTDLM--IKILRHGQ-HLEMAVMVGID---PQSDGLARAARLGVATTH   57 (310)
T ss_pred             CCcceEEEEccCcccHHHH--HHHHhcCC-cccceeEEccC---CCccHHHHHHhcCCcchh
Confidence            4578999999999 45443  33344555 34665555533   677899999999998755

>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=88.06  E-value=2.1  Score=32.52  Aligned_cols=27  Identities=15%  Similarity=0.161  Sum_probs=25.0

Q ss_pred             cCCCcchHHHHHHHHHhCCCeEeEeee
Q 023530           49 CPDEVGIVAKLSECIASRGGNILAADV   75 (281)
Q Consensus        49 G~DrpGIVa~VS~~La~~giNI~dl~q   75 (281)
                      .++.||..++|-+.|+++|+|+.-+.|
T Consensus        11 ~~~~~g~~a~IF~~La~~~InVDmI~q   37 (78)
T cd04933          11 MLGQYGFLAKVFSIFETLGISVDVVAT   37 (78)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence            368899999999999999999999987

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=87.96  E-value=1.9  Score=42.31  Aligned_cols=78  Identities=17%  Similarity=0.200  Sum_probs=48.8

Q ss_pred             CeeEEEEeeCC--hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCC---------CC---
Q 023530          128 KYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE---------NE---  193 (281)
Q Consensus       128 ~~rIavl~Sg~--GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~---------~~---  193 (281)
                      |+||+|++|.+  |+.--+++.+..+   ..+|+++.+++   .-....+.|++++-.+.++....         ..   
T Consensus         1 mk~VaILGsTGSIG~~tL~vi~~~p~---~f~VvaLaa~~---n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~   74 (385)
T PRK05447          1 MKRITILGSTGSIGTQTLDVIRRNPD---RFRVVALSAGK---NVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGI   74 (385)
T ss_pred             CceEEEEcCChHHHHHHHHHHHhCcc---ccEEEEEEcCC---CHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCc
Confidence            47999999654  4333333443222   47899998765   23467889999997776664210         00   


Q ss_pred             ----hHHHHHHHHh--CCCEEEEe
Q 023530          194 ----REEELLELVQ--NTDFLVLA  211 (281)
Q Consensus       194 ----~e~~l~~~L~--~~DlIVLA  211 (281)
                          .++.+.+++.  ++|+||.|
T Consensus        75 ~v~~G~~~~~~l~~~~~vD~Vv~A   98 (385)
T PRK05447         75 EVLAGEEGLCELAALPEADVVVAA   98 (385)
T ss_pred             eEEEChhHHHHHhcCCCCCEEEEe
Confidence                1345667776  68998876

>PRK08639 threonine dehydratase; Validated

Probab=87.92  E-value=2.2  Score=41.95  Aligned_cols=75  Identities=8%  Similarity=0.024  Sum_probs=47.5

Q ss_pred             CCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530           33 ESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (281)
Q Consensus        33 ~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~  108 (281)
                      +.+.......+.+++.=|||||-..++.+.+.+.+.||.+++.......+.=...+.++.++ ....+++.+.|++
T Consensus       327 ~~~l~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~-~~h~~~i~~~L~~  401 (420)
T PRK08639        327 ERSLIYEGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKD-AEDYDGLIERMEA  401 (420)
T ss_pred             HHHHHhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCC-HHHHHHHHHHHHH
Confidence            34444566778999999999999999999777777799999765311111112334455553 2234445555543

>TIGR02079 THD1 threonine dehydratase

Probab=87.85  E-value=2.5  Score=41.52  Aligned_cols=44  Identities=11%  Similarity=0.108  Sum_probs=36.2

Q ss_pred             CCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeee
Q 023530           33 ESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (281)
Q Consensus        33 ~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~   76 (281)
                      +.+...+...+.+.+.=|||||-++++.+.+...+.||.+.+..
T Consensus       316 ~~~l~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~  359 (409)
T TIGR02079       316 ERSLLYEGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYT  359 (409)
T ss_pred             HHHHHhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence            33444456778999999999999999999777787899998875

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.

>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=87.85  E-value=5.4  Score=27.72  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=29.7

Q ss_pred             EEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530           44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV   77 (281)
Q Consensus        44 iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~   77 (281)
                      .+++.|.   +++|+.+++.+.|++.|+|+.-++|..
T Consensus         3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~   39 (66)
T cd04916           3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS   39 (66)
T ss_pred             EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence            5778885   789999999999999999999988743

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=87.44  E-value=3.7  Score=27.52  Aligned_cols=28  Identities=32%  Similarity=0.386  Sum_probs=25.5

Q ss_pred             CCCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530           50 PDEVGIVAKLSECIASRGGNILAADVFV   77 (281)
Q Consensus        50 ~DrpGIVa~VS~~La~~giNI~dl~q~~   77 (281)
                      +|.+|+.+++.+.|+++|+||.-+.|..
T Consensus         9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~~   36 (61)
T cd04891           9 PDKPGVAAKIFSALAEAGINVDMIVQSV   36 (61)
T ss_pred             CCCCcHHHHHHHHHHHcCCcEEEEEEcC
Confidence            6889999999999999999999988853

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=87.36  E-value=2.3  Score=33.31  Aligned_cols=68  Identities=24%  Similarity=0.369  Sum_probs=43.4

Q ss_pred             eeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh--C
Q 023530          129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N  204 (281)
Q Consensus       129 ~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~--~  204 (281)
                      +||+|.+.|+.  .-+.++...  .+  ..++++|....    .......++++|+| .+ +    +    +.++++  +
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~--~~--~~~v~~v~d~~----~~~~~~~~~~~~~~-~~-~----~----~~~ll~~~~   62 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRS--SP--DFEVVAVCDPD----PERAEAFAEKYGIP-VY-T----D----LEELLADED   62 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHT--TT--TEEEEEEECSS----HHHHHHHHHHTTSE-EE-S----S----HHHHHHHTT
T ss_pred             CEEEEECCcHHHHHHHHHHHhc--CC--CcEEEEEEeCC----HHHHHHHHHHhccc-ch-h----H----HHHHHHhhc
Confidence            48999999874  223344442  12  36888887654    23466778999999 22 2    1    335565  7


Q ss_pred             CCEEEEeccc
Q 023530          205 TDFLVLARYM  214 (281)
Q Consensus       205 ~DlIVLAgYM  214 (281)
                      +|+|+++.=-
T Consensus        63 ~D~V~I~tp~   72 (120)
T PF01408_consen   63 VDAVIIATPP   72 (120)
T ss_dssp             ESEEEEESSG
T ss_pred             CCEEEEecCC
Confidence            9999998543

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=87.14  E-value=2.1  Score=31.94  Aligned_cols=27  Identities=15%  Similarity=0.154  Sum_probs=24.9

Q ss_pred             cCCCcchHHHHHHHHHhCCCeEeEeee
Q 023530           49 CPDEVGIVAKLSECIASRGGNILAADV   75 (281)
Q Consensus        49 G~DrpGIVa~VS~~La~~giNI~dl~q   75 (281)
                      .++.+|..+++-+.|+++|+|+.-+.|
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~vDmI~~   37 (75)
T cd04935          11 MWQQVGFLADVFAPFKKHGVSVDLVST   37 (75)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence            358899999999999999999999987

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>PLN02317 arogenate dehydratase

Probab=87.00  E-value=4.9  Score=39.46  Aligned_cols=35  Identities=17%  Similarity=0.125  Sum_probs=29.3

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV   77 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~   77 (281)
                      ..+++++  +|+||-+.++-+.|+.+|+|+..+++.=
T Consensus       284 TSivfsl--~~~pG~L~k~L~~Fa~~~INLtkIESRP  318 (382)
T PLN02317        284 TSIVFSL--EEGPGVLFKALAVFALRDINLTKIESRP  318 (382)
T ss_pred             EEEEEEc--CCCCchHHHHHHHHHHCCCCEEEEEeee
Confidence            3444444  8899999999999999999999999853

>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=87.00  E-value=1.5  Score=29.03  Aligned_cols=33  Identities=18%  Similarity=0.092  Sum_probs=29.5

Q ss_pred             EEEEEcCC---CcchHHHHHHHHHhCCCeEeEeeee
Q 023530           44 IHVFHCPD---EVGIVAKLSECIASRGGNILAADVF   76 (281)
Q Consensus        44 iltV~G~D---rpGIVa~VS~~La~~giNI~dl~q~   76 (281)
                      .+++.|.+   .+|+.+++.+.|+++++||.-+.+.
T Consensus         2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~   37 (60)
T cd04868           2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS   37 (60)
T ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence            57788877   8999999999999999999999885

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am

>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=86.90  E-value=4.8  Score=28.76  Aligned_cols=35  Identities=11%  Similarity=0.034  Sum_probs=30.2

Q ss_pred             EEEEEEcC--CCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530           43 GIHVFHCP--DEVGIVAKLSECIASRGGNILAADVFV   77 (281)
Q Consensus        43 ~iltV~G~--DrpGIVa~VS~~La~~giNI~dl~q~~   77 (281)
                      .+++++|.  ..+|+.+++-+.|+++|+||.-+.|..
T Consensus         2 a~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~   38 (65)
T cd04918           2 SIISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGA   38 (65)
T ss_pred             cEEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence            46888887  468999999999999999999998854

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.

>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase

Probab=86.67  E-value=2.6  Score=42.17  Aligned_cols=79  Identities=10%  Similarity=0.103  Sum_probs=52.1

Q ss_pred             CCeeEEEEee-CC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCC------------
Q 023530          127 PKYKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN------------  192 (281)
Q Consensus       127 ~~~rIavl~S-g~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~------------  192 (281)
                      .++||+||+| |+ |++--+++.+..+   .++|+++-+++   .-.-..+-|++|.-.+..+.....            
T Consensus        56 ~~KkI~ILGSTGSIGtqtLdVI~~~pd---~f~vvaLaag~---Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~  129 (454)
T PLN02696         56 GPKPISLLGSTGSIGTQTLDIVAENPD---KFKVVALAAGS---NVTLLADQVRKFKPKLVAVRNESLVDELKEALADLD  129 (454)
T ss_pred             CccEEEEecCCcHhhHHHHHHHHhCcc---ccEEEEEECCC---CHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCC
Confidence            3579999999 55 6777778886432   36888887765   223456678899877766642100            


Q ss_pred             ---C---hHHHHHHHHh--CCCEEEEe
Q 023530          193 ---E---REEELLELVQ--NTDFLVLA  211 (281)
Q Consensus       193 ---~---~e~~l~~~L~--~~DlIVLA  211 (281)
                         +   .++.+.+++.  ++|+||.|
T Consensus       130 ~~~~vl~G~egl~~la~~~evDiVV~A  156 (454)
T PLN02696        130 DKPEIIPGEEGIVEVARHPEAVTVVTG  156 (454)
T ss_pred             CCcEEEECHHHHHHHHcCCCCCEEEEe
Confidence               0   1245667776  68988876

>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=86.30  E-value=6.5  Score=26.79  Aligned_cols=32  Identities=25%  Similarity=0.215  Sum_probs=27.4

Q ss_pred             EEEEEc---CCCcchHHHHHHHHHhCCCeEeEeee
Q 023530           44 IHVFHC---PDEVGIVAKLSECIASRGGNILAADV   75 (281)
Q Consensus        44 iltV~G---~DrpGIVa~VS~~La~~giNI~dl~q   75 (281)
                      .+++.|   ++.+|+.+++.+.|+++|+|+.-+++
T Consensus         2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~   36 (63)
T cd04936           2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST   36 (63)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence            467776   47799999999999999999988875

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu

>PRK11898 prephenate dehydratase; Provisional

Probab=84.26  E-value=7.9  Score=36.21  Aligned_cols=65  Identities=18%  Similarity=0.113  Sum_probs=42.0

Q ss_pred             cEEEEEEcC-CCcchHHHHHHHHHhCCCeEeEeeeeccCC-CC--eEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530           42 HGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVPEK-KN--VFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (281)
Q Consensus        42 ~~iltV~G~-DrpGIVa~VS~~La~~giNI~dl~q~~~~~-~g--~F~mrlev~~p~~~~~~~~L~~~L~~la~  111 (281)
                      +..|.+.-+ |+||-.+++-+.++++|+|+..+++.=.+. .+  .|++.++..     .+...++++++.+.+
T Consensus       196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~-----~~~~~~~~al~~L~~  264 (283)
T PRK11898        196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH-----IDDVLVAEALKELEA  264 (283)
T ss_pred             eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc-----CCCHHHHHHHHHHHH
Confidence            444555554 469999999999999999999999853111 12  455444332     233456777766643

>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway

Probab=84.09  E-value=9.6  Score=27.43  Aligned_cols=34  Identities=21%  Similarity=0.145  Sum_probs=29.2

Q ss_pred             EEEEEEcC--CCcchHHHHHHHHHhCCCeEeEeeee
Q 023530           43 GIHVFHCP--DEVGIVAKLSECIASRGGNILAADVF   76 (281)
Q Consensus        43 ~iltV~G~--DrpGIVa~VS~~La~~giNI~dl~q~   76 (281)
                      .+++++|.  .++|+.+++.+.|++.|+|+.-.+|.
T Consensus         3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~   38 (66)
T cd04915           3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQS   38 (66)
T ss_pred             EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEec
Confidence            46788886  36899999999999999999998884

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas

>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain

Probab=83.77  E-value=11  Score=32.28  Aligned_cols=91  Identities=18%  Similarity=0.258  Sum_probs=54.2

Q ss_pred             eEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC-----hhHHHHHHhCCCCEEEeC-CCC-------CCh
Q 023530          130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC-AKE-------NER  194 (281)
Q Consensus       130 rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~-----a~~~~~A~~~gIP~~~i~-~k~-------~~~  194 (281)
                      ||+|..||+-  +.+-.++...... .+.++.+|..|+.-.+.     ..+.++|+++|||+++++ ...       ...
T Consensus         1 ~v~va~SGG~DS~~ll~ll~~~~~~-~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~   79 (189)
T TIGR02432         1 RILVAVSGGVDSMALLHLLLKLQPK-LKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALAKGKKKNL   79 (189)
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhccccCCCH
Confidence            6899999984  5566666543221 23467777777532111     357789999999998876 211       011


Q ss_pred             H--------HHHHHHHh--CCCEEEEecccccCChhH
Q 023530          195 E--------EELLELVQ--NTDFLVLARYMQPVPLQK  221 (281)
Q Consensus       195 e--------~~l~~~L~--~~DlIVLAgYMrILs~~f  221 (281)
                      +        ..+.+..+  +.+.|+++=.+-=+.+.+
T Consensus        80 ~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~e~~  116 (189)
T TIGR02432        80 EEAAREARYDFFEEIAKKHGADYILTAHHADDQAETI  116 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHHHHH
Confidence            2        22333333  689999976655444433

The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).

>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=83.60  E-value=10  Score=25.84  Aligned_cols=32  Identities=22%  Similarity=0.190  Sum_probs=27.7

Q ss_pred             EEEEEc---CCCcchHHHHHHHHHhCCCeEeEeee
Q 023530           44 IHVFHC---PDEVGIVAKLSECIASRGGNILAADV   75 (281)
Q Consensus        44 iltV~G---~DrpGIVa~VS~~La~~giNI~dl~q   75 (281)
                      .+++.|   ++.+|+.+++.+.|+++++|+.-+++
T Consensus         2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~   36 (63)
T cd04923           2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST   36 (63)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc
Confidence            467777   37799999999999999999988875

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Probab=83.48  E-value=6.1  Score=38.89  Aligned_cols=83  Identities=11%  Similarity=0.131  Sum_probs=54.6

Q ss_pred             CeeEEEEeeCC--hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCC------------C-
Q 023530          128 KYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE------------N-  192 (281)
Q Consensus       128 ~~rIavl~Sg~--GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~------------~-  192 (281)
                      |+||+||+|.+  |++..+++.+..+   ..+|+++.+++   .-....+.|++++-.+.++....            . 
T Consensus         1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~---~f~v~~Laa~~---n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~   74 (389)
T TIGR00243         1 MKQIVILGSTGSIGKSTLDVVRHNPD---HFQVVALSAGK---NVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGS   74 (389)
T ss_pred             CceEEEEecChHHHHHHHHHHHhCcc---ccEEEEEEcCC---CHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCC
Confidence            46999999987  5666667765432   37899988875   22356778999997777764210            0 


Q ss_pred             --C---hHHHHHHHHh--CCCEEEEe--ccccc
Q 023530          193 --E---REEELLELVQ--NTDFLVLA--RYMQP  216 (281)
Q Consensus       193 --~---~e~~l~~~L~--~~DlIVLA--gYMrI  216 (281)
                        +   .++.+.++.+  ++|+||.|  |+.-+
T Consensus        75 ~~~v~~G~~~l~~l~~~~~~D~vv~AivG~aGL  107 (389)
T TIGR00243        75 RTEVLVGEEGICEMAALEDVDQVMNAIVGAAGL  107 (389)
T ss_pred             CcEEEECHHHHHHHHcCCCCCEEEEhhhcHhhH
Confidence              0   1345666666  68999876  44443

1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.

>PRK00907 hypothetical protein; Provisional

Probab=82.88  E-value=5.4  Score=31.41  Aligned_cols=66  Identities=20%  Similarity=0.178  Sum_probs=45.5

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec-cCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV-PEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~-~~~~g~F~-mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      -.|-+.|+|.+++++...|..++..+.-+..+.+... .+..|.|. .++.+.+.    +.++|.+-++++.
T Consensus        16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at----s~eQld~iY~~L~   83 (92)
T PRK00907         16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE----SREQYDAAHQALR   83 (92)
T ss_pred             CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC----CHHHHHHHHHHHh
Confidence            3589999999999999999999998876554443332 23478874 45555554    4556655555554

>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]

Probab=82.42  E-value=2.4  Score=41.70  Aligned_cols=103  Identities=17%  Similarity=0.315  Sum_probs=64.2

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccceeeeec
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP  123 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~~~~~~  123 (281)
                      .|.|.|.||.||..++-..|..+++|+--++.  ++....|     +..|.  .+.+.|++-..++-.          ++
T Consensus         2 RleV~cedRlGltrelLdlLv~r~idl~~iEi--d~~~~IY-----ln~p~--l~~~~fs~L~aei~~----------I~   62 (511)
T COG3283           2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEI--DPIGRIY-----LNFPE--LEFESFSSLMAEIRR----------IP   62 (511)
T ss_pred             ceEEEehhhhchHHHHHHHHHhcccCccceee--cCCCeEE-----Eeccc--cCHHHHHHHHHHHhc----------CC
Confidence            57899999999999999999999999988776  4333233     34443  344444433332211          12


Q ss_pred             CCCCCeeEEEEeeCCh-hHHHHHHHhhhcCCCCeeE--EEEEeCC
Q 023530          124 DIDPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEI--TCVISNH  165 (281)
Q Consensus       124 ~~~~~~rIavl~Sg~G-snL~aLl~~~~~g~l~~eI--~~Visn~  165 (281)
                      --....+|.+|-|-+- .-|.+|+.+...+-+..+.  ..+.+|+
T Consensus        63 GV~~vr~V~~mPseR~hl~L~aLL~al~~pVlsvd~kg~v~~aNp  107 (511)
T COG3283          63 GVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKGKVDMANP  107 (511)
T ss_pred             CccceeeecCCcchhHhHHHHHHHHhCCCceEEecccCceeecCH
Confidence            2223457777877764 6788899887655433222  2345664

>PRK06291 aspartate kinase; Provisional

Probab=82.32  E-value=23  Score=35.33  Aligned_cols=36  Identities=14%  Similarity=0.135  Sum_probs=31.5

Q ss_pred             cEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530           42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV   77 (281)
Q Consensus        42 ~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~   77 (281)
                      -..|++.|.   +.+|+.+++.+.|+++|+|+.-++|..
T Consensus       321 valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~s  359 (465)
T PRK06291        321 VALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGS  359 (465)
T ss_pred             EEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecC
Confidence            467888886   689999999999999999999998853

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=82.22  E-value=6.3  Score=39.32  Aligned_cols=64  Identities=11%  Similarity=0.160  Sum_probs=42.1

Q ss_pred             cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCC--eEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKN--VFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (281)
Q Consensus        42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g--~F~mrlev~~p~~~~~~~~L~~~L~~la~  111 (281)
                      +..|.+.-+|+||-.+.+-+.++++|+|+..+++.-.. ..+  .||+.++..  .   + ..+.+.++++.+
T Consensus        16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~--~---~-~~v~~aL~~Lk~   82 (436)
T TIGR01268        16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEA--S---D-RKLEGVIEHLRQ   82 (436)
T ss_pred             eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecC--c---c-HHHHHHHHHHHH
Confidence            34444445999999999999999999999999985422 122  455444322  1   2 455666665544

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=81.91  E-value=12  Score=27.13  Aligned_cols=33  Identities=18%  Similarity=0.221  Sum_probs=28.8

Q ss_pred             EEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeee
Q 023530           44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVF   76 (281)
Q Consensus        44 iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~   76 (281)
                      .+++.|.   +++|+.+++-+.|+++++|+.-++|.
T Consensus         3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~   38 (80)
T cd04921           3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQA   38 (80)
T ss_pred             EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence            5777664   78999999999999999999999885

This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat

>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains

Probab=81.78  E-value=4.3  Score=30.15  Aligned_cols=25  Identities=8%  Similarity=0.022  Sum_probs=23.2

Q ss_pred             CCcchHHHHHHHHHhCCCeEeEeee
Q 023530           51 DEVGIVAKLSECIASRGGNILAADV   75 (281)
Q Consensus        51 DrpGIVa~VS~~La~~giNI~dl~q   75 (281)
                      -.+|.+++|-+.|+++|+|+.-+.|
T Consensus        13 ~~~g~~~~If~~la~~~I~vd~I~~   37 (73)
T cd04934          13 LSHGFLARIFAILDKYRLSVDLIST   37 (73)
T ss_pred             cccCHHHHHHHHHHHcCCcEEEEEe
Confidence            3489999999999999999999987

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=81.05  E-value=4.9  Score=33.54  Aligned_cols=52  Identities=12%  Similarity=0.162  Sum_probs=37.8

Q ss_pred             EEEEeeCC--hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC
Q 023530          131 VAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC  188 (281)
Q Consensus       131 Iavl~Sg~--GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~  188 (281)
                      |+||+|.+  |++--+++.+..+   ..+|+++.+++   .-....+.|++|+-++.++.
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d---~f~v~~Lsa~~---n~~~L~~q~~~f~p~~v~i~   54 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPD---KFEVVALSAGS---NIEKLAEQAREFKPKYVVIA   54 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTT---TEEEEEEEESS---THHHHHHHHHHHT-SEEEES
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCC---ceEEEEEEcCC---CHHHHHHHHHHhCCCEEEEc
Confidence            67888876  5777777776432   47999998875   23457788999998888875

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=80.67  E-value=13  Score=25.86  Aligned_cols=31  Identities=19%  Similarity=0.194  Sum_probs=26.2

Q ss_pred             EEEEcC---CCcchHHHHHHHHHhCCCeEeEeee
Q 023530           45 HVFHCP---DEVGIVAKLSECIASRGGNILAADV   75 (281)
Q Consensus        45 ltV~G~---DrpGIVa~VS~~La~~giNI~dl~q   75 (281)
                      |++.+.   +++|..++|-+.|+++|+|+.-+.|
T Consensus         3 i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~t   36 (62)
T cd04890           3 IEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPT   36 (62)
T ss_pred             EEEeccccCcccCHHHHHHHHHHHcCCeEEEEec
Confidence            444444   7789999999999999999999976

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=80.67  E-value=7.6  Score=35.96  Aligned_cols=68  Identities=21%  Similarity=0.285  Sum_probs=41.7

Q ss_pred             CCeeEEEEeeCCh---hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh
Q 023530          127 PKYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ  203 (281)
Q Consensus       127 ~~~rIavl~Sg~G---snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~  203 (281)
                      .++||+|++.|..   .-+.++..   .+.. .++++|...+    ...+.+.|+++|++ ....    +    +.++|+
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~---~~~~-~~~vav~d~~----~~~a~~~a~~~~~~-~~~~----~----~~~ll~   64 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAA---LGGG-LELVAVVDRD----PERAEAFAEEFGIA-KAYT----D----LEELLA   64 (342)
T ss_pred             CeeEEEEEcccHHHHHHhHHHHHh---CCCc-eEEEEEecCC----HHHHHHHHHHcCCC-cccC----C----HHHHhc
Confidence            4689999999842   12222222   1211 5778777654    34578899999999 2211    1    335666


Q ss_pred             --CCCEEEEe
Q 023530          204 --NTDFLVLA  211 (281)
Q Consensus       204 --~~DlIVLA  211 (281)
                        ++|+|+.|
T Consensus        65 ~~~iD~V~Ia   74 (342)
T COG0673          65 DPDIDAVYIA   74 (342)
T ss_pred             CCCCCEEEEc
Confidence              47888876

>COG3603 Uncharacterized conserved protein [Function unknown]

Probab=80.31  E-value=5.2  Score=33.17  Aligned_cols=35  Identities=26%  Similarity=0.400  Sum_probs=31.7

Q ss_pred             EEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530           43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV   77 (281)
Q Consensus        43 ~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~   77 (281)
                      ..+++.||   |-+||++.|++.|+++|+-|--++++.
T Consensus        64 ~~lk~~gpf~FgltGilasV~~pLsd~gigIFavStyd  101 (128)
T COG3603          64 SCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTYD  101 (128)
T ss_pred             EEEEEeccccCCcchhhhhhhhhHhhCCccEEEEEecc
Confidence            46788888   889999999999999999999999974

>PRK08841 aspartate kinase; Validated

Probab=80.29  E-value=6.9  Score=38.33  Aligned_cols=63  Identities=14%  Similarity=0.211  Sum_probs=48.3

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhccc
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~  116 (281)
                      .-.+++++|...||+.+++-+.|+++|+||....+     +.   ..+.+-++     .++.++++..+-++|..+
T Consensus       317 ~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~-----s~---~~is~vv~-----~~~~~~av~~lH~~f~~~  379 (392)
T PRK08841        317 SVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCST-----EP---QSSMLVLD-----PANVDRAANILHKTYVTS  379 (392)
T ss_pred             CEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEEC-----CC---cEEEEEEe-----HHHHHHHHHHHHHHHcCC
Confidence            45689999999999999999999999999977776     22   12333333     366788888888888765

>PRK06635 aspartate kinase; Reviewed

Probab=80.04  E-value=7.1  Score=37.84  Aligned_cols=35  Identities=23%  Similarity=0.193  Sum_probs=30.8

Q ss_pred             ccEEEEEEc---CCCcchHHHHHHHHHhCCCeEeEeee
Q 023530           41 THGIHVFHC---PDEVGIVAKLSECIASRGGNILAADV   75 (281)
Q Consensus        41 ~~~iltV~G---~DrpGIVa~VS~~La~~giNI~dl~q   75 (281)
                      .-..+++.|   +|+||+++++.+.|+++|+||.-+.+
T Consensus       339 ~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~s  376 (404)
T PRK06635        339 DIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIST  376 (404)
T ss_pred             CeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEe
Confidence            456788988   59999999999999999999988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	281
3o1l_A	302	Crystal Structure Of A Formyltetrahydrofolate Defor		2e-16
3obi_A	288	Crystal Structure Of A Formyltetrahydrofolate Defor		4e-11
3nrb_A	287	Crystal Structure Of A Formyltetrahydrofolate Defor		1e-10
3lou_A	292	Crystal Structure Of Formyltetrahydrofolate Deformy		3e-07
3n0v_A	286	Crystal Structure Of A Formyltetrahydrofolate Defor		3e-06

>pdb|3O1L|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str. Dc3000 At 2.20 A Resolution Length = 302

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 83/180 (46%), Gaps = 13/180 (7%)
Query: 46  VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDED 105
           V  CPD VGIVAK+S  +AS  G I  A          F+ R E   D + +  +   E 
Sbjct: 26  VIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFXRHEIRADTLPFDLDGFREA 85
Query: 106 FFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
           F  +++ F+      R+ D   K +V + AS++ HCL D L+ W   +L  +I CVISNH
Sbjct: 86  FTPIAEEFSXD---WRITDSAQKKRVVLXASRESHCLADLLHRWHSDELDCDIACVISNH 142
Query: 166 DRGPNSHVIRFLERHGIPYHYL-----CAKXXXXXXXXXXXVQNTDFLVLARYMQPVPLQ 220
                  +   +E H IPY+++       +               D +VLARY Q +P Q
Sbjct: 143 -----QDLRSXVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYXQILPPQ 197

>pdb|3OBI|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Np_949368) From Rhodopseudomonas Palustris Cga009 At 1.95 A Resolution Length = 288

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 75/180 (41%), Gaps = 12/180 (6%)
Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CPD  GIV+ +S  +   G NIL A  +   +   F+ R  F       P   +   F  
Sbjct: 13  CPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFXRVVFNAAAKVIPLASLRTGFGV 72
Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
           ++  F          D + + KV +L S+ +HCL D LY W+ G L    T ++SNH R 
Sbjct: 73  IAAKFTXG---WHXRDRETRRKVXLLVSQSDHCLADILYRWRVGDLHXIPTAIVSNHPRE 129
Query: 169 PNSHVIRFLERHGIP-YHYLCAKXXXXXXXXXXXV----QNTDFLVLARYMQPVPLQKEA 223
             S      +   IP YH+   K                 +TD +VLARY Q +  +  A
Sbjct: 130 TFSG----FDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYXQILSDEXSA 185

>pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A Resolution Length = 287

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 81/175 (46%), Gaps = 20/175 (11%)
Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           C D  GIV+++S  + + G NI+ A+ F  E  + F+ R      P+    +  +  F K
Sbjct: 14  CQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFXRVSVEI-PVAGVND-FNSAFGK 71
Query: 109 LSKMFNA---MRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
           + + +NA    R     P  D K KV +  SK +HCL D LY  + G+L  E+  +ISNH
Sbjct: 72  VVEKYNAEWWFR-----PRTDRK-KVVIXVSKFDHCLGDLLYRHRLGELDXEVVGIISNH 125
Query: 166 DRGPNSHVIRFLERHGIPYHYL----CAKXXXXXXXXXXXVQN-TDFLVLARYMQ 215
            R   S  +       IP+HYL      K            Q+  D +VLARY Q
Sbjct: 126 PREALSVSL----VGDIPFHYLPVTPATKAAQESQIKNIVTQSQADLIVLARYXQ 176

>pdb|3LOU|A Chain A, Crystal Structure Of Formyltetrahydrofolate Deformylase (yp_105254.1) From Burkholderia Mallei Atcc 23344 At 1.90 A Resolution Length = 292

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 17/175 (9%)
Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF--IFDPIKWPREQMDEDF 106
           CP   G VA +   +      +    VF  +    F+ R  F    D      + +  +F
Sbjct: 17  CPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREF 76
Query: 107 FKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH- 165
             +++ F   R    + D+  + KV +  SK EHCL D L+ W+ G+L  +I  ++SNH 
Sbjct: 77  EPIAERF---RXQWAIHDVAARPKVLIXVSKLEHCLADLLFRWKXGELKXDIVGIVSNHP 133
Query: 166 DRGPNSHVIRFLERHGIPYHY--LCAKXXXXXXXXXXXVQNT---DFLVLARYMQ 215
           D  P         +HG+P+ +  + A            V  T   + ++LARY Q
Sbjct: 134 DFAP------LAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYXQ 182

>pdb|3N0V|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A Resolution Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 20/175 (11%)
Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
           CP  +G V  ++  +  +   +     F   +   F+ R EF     + P +  DE  F+
Sbjct: 15  CPSXLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEF-----RQP-DDFDEAGFR 68
Query: 109 --LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH- 165
             L++   A      +   + + KV +  SK +HCL D LY  + G+L  ++  V+SNH 
Sbjct: 69  AGLAERSEAFGXAFELTAPNHRPKVVIXVSKADHCLNDLLYRQRIGQLGXDVVAVVSNHP 128
Query: 166 DRGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQ 215
           D  P +H       H IPY++               +Q       + ++LARY Q
Sbjct: 129 DLEPLAHW------HKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYXQ 177
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	281
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	2e-62
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	3e-61
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	5e-61
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	2e-60
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	2e-56
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
3kcq_A	215	Phosphoribosylglycinamide formyltransferase; struc	1e-08
4ds3_A	209	Phosphoribosylglycinamide formyltransferase; struc	3e-08
3av3_A	212	Phosphoribosylglycinamide formyltransferase; struc	4e-08
3p9x_A	211	Phosphoribosylglycinamide formyltransferase; struc	4e-08
3auf_A	229	Glycinamide ribonucleotide transformylase 1; struc	4e-08
3da8_A	215	Probable 5'-phosphoribosylglycinamide formyltransf	8e-08
1jkx_A	212	GART;, phosphoribosylglycinamide formyltransferase	9e-08
3tqr_A	215	Phosphoribosylglycinamide formyltransferase; purin	2e-07
2ywr_A	216	Phosphoribosylglycinamide formyltransferase; rossm	2e-07
1meo_A	209	Phosophoribosylglycinamide formyltransferase; puri	2e-07

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Length = 302

 Score =  197 bits (504), Expect = 2e-62
 Identities = 60/191 (31%), Positives = 90/191 (47%), Gaps = 13/191 (6%)

Query: 30  EPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSE 89
              E+     +     V  CPD VGIVAK+S  +AS  G I  A          F+ R E
Sbjct: 10  HHHENLYFQGMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHE 69

Query: 90  FIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGW 149
              D + +  +   E F  +++ F+      R+ D   K +V ++AS++ HCL D L+ W
Sbjct: 70  IRADTLPFDLDGFREAFTPIAEEFSM---DWRITDSAQKKRVVLMASRESHCLADLLHRW 126

Query: 150 QEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--N 204
              +L  +I CVISNH       +   +E H IPY+++    ++      E+  LV    
Sbjct: 127 HSDELDCDIACVISNHQ-----DLRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQ 181

Query: 205 TDFLVLARYMQ 215
            D +VLARYMQ
Sbjct: 182 ADVVVLARYMQ 192

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Length = 288

 Score =  194 bits (495), Expect = 3e-61
 Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 12/182 (6%)

Query: 39  TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWP 98
                +    CPD  GIV+ +S  +   G NIL A  +   +   F+ R  F       P
Sbjct: 3   PHHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIP 62

Query: 99  REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEI 158
              +   F  ++  F        + D + + KV +L S+ +HCL D LY W+ G L +  
Sbjct: 63  LASLRTGFGVIAAKFTM---GWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIP 119

Query: 159 TCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLARY 213
           T ++SNH R          +   IP+++    K+   ++E  +  L+   +TD +VLARY
Sbjct: 120 TAIVSNHPR----ETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARY 175

Query: 214 MQ 215
           MQ
Sbjct: 176 MQ 177

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Length = 292

 Score =  193 bits (494), Expect = 5e-61
 Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 15/188 (7%)

Query: 35  SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF--IF 92
           SV       +    CP   G VA +   +      +    VF  +    F+ R  F    
Sbjct: 3   SVPQRPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATD 62

Query: 93  DPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEG 152
           D      + +  +F  +++ F        + D+  + KV ++ SK EHCL D L+ W+ G
Sbjct: 63  DADALRVDALRREFEPIAERFRMQ---WAIHDVAARPKVLIMVSKLEHCLADLLFRWKMG 119

Query: 153 KLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQNT--DF 207
           +L ++I  ++SNH             +HG+P+ +     +   ++E + L++ + +  + 
Sbjct: 120 ELKMDIVGIVSNHP-----DFAPLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAEL 174

Query: 208 LVLARYMQ 215
           ++LARYMQ
Sbjct: 175 VILARYMQ 182

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Length = 286

 Score =  192 bits (490), Expect = 2e-60
 Identities = 41/184 (22%), Positives = 79/184 (42%), Gaps = 14/184 (7%)

Query: 37  SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIK 96
           S      I    CP  +G V  ++  +  +   +     F   +   F+ R EF      
Sbjct: 3   SRAPDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD-D 61

Query: 97  WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPV 156
           +          + S+ F        +   + + KV ++ SK +HCL D LY  + G+L +
Sbjct: 62  FDEAGFRAGLAERSEAFGM---AFELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGM 118

Query: 157 EITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLA 211
           ++  V+SNH       +      H IPY++     ++   +E ++L++++    + ++LA
Sbjct: 119 DVVAVVSNHP-----DLEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILA 173

Query: 212 RYMQ 215
           RYMQ
Sbjct: 174 RYMQ 177

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Length = 287

 Score =  182 bits (464), Expect = 2e-56
 Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 14/183 (7%)

Query: 38  PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKW 97
                 +    C D  GIV+++S  + + G NI+ A+ F  E  + F+ R          
Sbjct: 3   NKNNQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAG- 61

Query: 98  PREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVE 157
                +  F K+ + +NA            + KV ++ SK +HCL D LY  + G+L +E
Sbjct: 62  -VNDFNSAFGKVVEKYNA---EWWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDME 117

Query: 158 ITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--NTDFLVLAR 212
           +  +ISNH R      +       IP+HYL         +E ++  +V     D +VLAR
Sbjct: 118 VVGIISNHPR----EALSVSLVGDIPFHYLPVTPATKAAQESQIKNIVTQSQADLIVLAR 173

Query: 213 YMQ 215
           YMQ
Sbjct: 174 YMQ 176

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 3e-09
 Identities = 40/265 (15%), Positives = 86/265 (32%), Gaps = 62/265 (23%)

Query: 32  IESSVSPTLTHGI--HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSE 89
           ++      L+     H+    D V    +L   + S+   +     FV E   + Y   +
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM--VQKFVEEVLRINY---K 92

Query: 90  FIFDPIKWPREQ--MDEDFF--KLSKMFNAMRSVVR--VPDIDPKYKV-AVLASKQEHCL 142
           F+  PIK  + Q  M    +  +  +++N  +   +  V  + P  K+   L   +    
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 143 VDFLYGWQ-EGK--LPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELL 199
           V  + G    GK  + ++   V  ++         +   +      +L  K     E +L
Sbjct: 153 V-LIDGVLGSGKTWVALD---VCLSY---------KVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 200 ELVQN------TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMHMPKHMIL 253
           E++Q        ++   + +   + L+             S +  L         ++ +L
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIH-----------SIQAELRRLLKSKPYENCLL 248

Query: 254 T-------------DKGC--LCSTR 263
                         +  C  L +TR
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTR 273

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 6e-06
 Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 62/231 (26%)

Query: 10  SLQQVVKFTNRSFKSLKFPGEPIE-SSVSPTLTHGIHVFHCPDEVGIVAKLSECIA---- 64
               ++K+ +   + L     P E  + +P     I          I   + + +A    
Sbjct: 303 VKSLLLKYLDCRPQDL-----PREVLTTNP-RRLSI----------IAESIRDGLATWDN 346

Query: 65  ------SRGGNILAA--DVFVP-EKKNVFYSRSEFIFD-----PIK-----WPR------ 99
                  +   I+ +  +V  P E + +F   S  +F      P       W        
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--VFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 100 EQMDEDFFKLSKMF-NAMRSVVRVPDIDPKYKVAVLASKQEH-CLVDFLYGWQEGKLPVE 157
             +     K S +      S + +P I  + KV +      H  +VD  Y          
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH-Y---------N 454

Query: 158 ITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFL 208
           I     + D  P  ++ ++   H I +H    +  ER      +  +  FL
Sbjct: 455 IPKTFDSDDLIPP-YLDQYFYSH-IGHHLKNIEHPERMTLFRMVFLDFRFL 503

>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} Length = 215

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 18/96 (18%)

Query: 127 PKYKVAVLAS------KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH 180
            + +V VL S      +    L      +   +  V I+CVISN+     +  +   + +
Sbjct: 7   KELRVGVLISGRGSNLEA---LAKA---FSTEESSVVISCVISNN---AEARGLLIAQSY 57

Query: 181 GIPYHYLCAKENEREEELLELVQ--NTDFLVLARYM 214
           GIP   +  K  +  E +  +++  + D + LA +M
Sbjct: 58  GIPTFVVKRKPLD-IEHISTVLREHDVDLVCLAGFM 92

>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} Length = 209

 Score = 52.1 bits (126), Expect = 3e-08
 Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 21/104 (20%)

Query: 123 PDIDPKYKVAVLAS------KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRF 176
           P    + +V +  S      +    L+      Q    P EI  V S+      +  +  
Sbjct: 2   PGSMKRNRVVIFISGGGSNME---ALIRAA---QAPGFPAEIVAVFSDK---AEAGGLAK 52

Query: 177 LERHGIPYHYLCAKE----NEREEELLELVQ--NTDFLVLARYM 214
            E  GI       K+       E+ +L  +     D + LA YM
Sbjct: 53  AEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYM 96

>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} Length = 212

 Score = 51.7 bits (125), Expect = 4e-08
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 25/99 (25%)

Query: 130 KVAVLASKQ--------EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG 181
           ++AV AS          +          + G LP  +  ++ +    P + VI    R  
Sbjct: 5   RLAVFASGSGTNFQAIVDAA--------KRGDLPARVALLVCDR---PGAKVIERAAREN 53

Query: 182 IPYHYLCAKE----NEREEELLELVQ--NTDFLVLARYM 214
           +P      K+       E E+L  ++    D++ LA YM
Sbjct: 54  VPAFVFSPKDYPSKAAFESEILRELKGRQIDWIALAGYM 92

>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans} Length = 211

 Score = 51.8 bits (125), Expect = 4e-08
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 19/96 (19%)

Query: 130 KVAVLAS-----KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184
           +VA+ AS      +   ++      + G+LP E+  +I++    P + V+  ++ H IP 
Sbjct: 4   RVAIFASGSGTNAEA--IIQSQ---KAGQLPCEVALLITDK---PGAKVVERVKVHEIPV 55

Query: 185 HYLCAKE----NEREEELLELVQ--NTDFLVLARYM 214
             L  K        E E+++ ++    DF+VLA YM
Sbjct: 56  CALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYM 91

>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} Length = 229

 Score = 51.8 bits (125), Expect = 4e-08
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 19/112 (16%)

Query: 114 NAMRSVVRVPDIDPKYKVAVLASK-----QEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
           +   S   +       ++ VL S      Q   ++D   G +EG++P  +  VIS+    
Sbjct: 8   HHHSSGENLYFQGHMIRIGVLISGSGTNLQ--AILD---GCREGRIPGRVAVVISDR--- 59

Query: 169 PNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ--NTDFLVLARYM 214
            +++ +    R G+   ++           +  L E +Q    D + LA YM
Sbjct: 60  ADAYGLERARRAGVDALHMDPAAYPSRTAFDAALAERLQAYGVDLVCLAGYM 111

>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Length = 215

 Score = 50.6 bits (122), Expect = 8e-08
 Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 22/110 (20%)

Query: 116 MRSVVRVPDIDPKYKVAVLASK-----QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN 170
           ++  +RVP   P  ++ VLAS      +   L+D       G  P  +  V  + +    
Sbjct: 1   VQEPLRVPPSAPA-RLVVLASGTGSLLR--SLLD----AAVGDYPARVVAVGVDRE---- 49

Query: 171 SHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ--NTDFLVLARYM 214
                      +P   +   +    +  +  +         D +V A +M
Sbjct: 50  CRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFM 99

>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Length = 212

 Score = 50.6 bits (122), Expect = 9e-08
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 19/96 (19%)

Query: 130 KVAVLAS-----KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184
            + VL S      Q   ++D     +  K+   +  V SN     ++  +    + GI  
Sbjct: 2   NIVVLISGNGSNLQ--AIIDA---CKTNKIKGTVRAVFSNK---ADAFGLERARQAGIAT 53

Query: 185 HYLCAKE----NEREEELLELVQ--NTDFLVLARYM 214
           H L A         + EL+  +     D +VLA +M
Sbjct: 54  HTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFM 89

>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} Length = 215

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 20/99 (20%)

Query: 127 PKYKVAVLASK-----QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG 181
               + VL S      Q   ++       +  L +EI  VISN     +++ ++  ++  
Sbjct: 4   EPLPIVVLISGNGTNLQA--IIGA----IQKGLAIEIRAVISNR---ADAYGLKRAQQAD 54

Query: 182 IPYHYLCAKE----NEREEELLELVQ--NTDFLVLARYM 214
           IP H +  +E     + E  L + +   +   +VLA +M
Sbjct: 55  IPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFM 93

>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Length = 216

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 21/97 (21%)

Query: 130 KVAVLAS------KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 183
           K+ VL S      +    ++D +   + GK+   I  VIS++   P ++ I   ++H + 
Sbjct: 3   KIGVLVSGRGSNLQ---AIIDAI---ESGKVNASIELVISDN---PKAYAIERCKKHNVE 53

Query: 184 YHYLCAKE----NEREEELLELVQ--NTDFLVLARYM 214
              +  KE     E EE +   ++    + +VLA +M
Sbjct: 54  CKVIQRKEFPSKKEFEERMALELKKKGVELVVLAGFM 90

>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Length = 209

 Score = 49.4 bits (119), Expect = 2e-07
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 21/97 (21%)

Query: 130 KVAVLAS------KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 183
           +VAVL S      +    L+D     +E     +I  VISN         +   ER GIP
Sbjct: 2   RVAVLISGTGSNLQ---ALIDS---TREPNSSAQIDIVISNK---AAVAGLDKAERAGIP 52

Query: 184 YHYLCAKE----NEREEELLELVQ--NTDFLVLARYM 214
              +  K      E +  +  +++  + D + LA +M
Sbjct: 53  TRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFM 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	281
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	100.0
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	100.0
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	100.0
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	100.0
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	100.0
3p9x_A	211	Phosphoribosylglycinamide formyltransferase; struc	99.97
3tqr_A	215	Phosphoribosylglycinamide formyltransferase; purin	99.97
4ds3_A	209	Phosphoribosylglycinamide formyltransferase; struc	99.97
3kcq_A	215	Phosphoribosylglycinamide formyltransferase; struc	99.97
3da8_A	215	Probable 5'-phosphoribosylglycinamide formyltransf	99.97
1meo_A	209	Phosophoribosylglycinamide formyltransferase; puri	99.96
1jkx_A	212	GART;, phosphoribosylglycinamide formyltransferase	99.96
3av3_A	212	Phosphoribosylglycinamide formyltransferase; struc	99.96
3auf_A	229	Glycinamide ribonucleotide transformylase 1; struc	99.96
2ywr_A	216	Phosphoribosylglycinamide formyltransferase; rossm	99.95
1fmt_A	314	Methionyl-tRNA FMet formyltransferase; initiator t	99.89
2bln_A	305	Protein YFBG; transferase, formyltransferase, L-AR	99.88
3q0i_A	318	Methionyl-tRNA formyltransferase; structural genom	99.87
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	99.86
3rfo_A	317	Methionyl-tRNA formyltransferase; structural genom	99.86
3tqq_A	314	Methionyl-tRNA formyltransferase; protein synthesi	99.86
2bw0_A	329	10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase	99.85
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	99.73
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	99.59
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.56
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.46
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.44
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.43
1zgh_A	260	Methionyl-tRNA formyltransferase; southeast collab	99.22
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.44
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.11
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.68
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	97.4
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	97.4
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	97.39
2f06_A	144	Conserved hypothetical protein; structural genomic	97.33
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.2
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	96.91
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.78
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.25
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	96.15
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	96.09
2f06_A	144	Conserved hypothetical protein; structural genomic	95.99
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	95.16
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	94.86
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	94.6
3rjz_A	237	N-type ATP pyrophosphatase superfamily; structural	94.07
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	93.43
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	93.32
4had_A	350	Probable oxidoreductase protein; structural genomi	92.61
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	91.76
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	91.63
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	91.52
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	91.23
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	90.81
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	90.57
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	90.42
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	89.85
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	89.32
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	89.15
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	88.92
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	88.83
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	88.49
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	88.44
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	87.94
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	87.41
3luy_A	329	Probable chorismate mutase; structural genomics, A	86.9
1wy5_A	317	TILS, hypothetical UPF0072 protein AQ_1887; N-type	86.86
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	86.35
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	85.72
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	85.34
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	85.24
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	84.71
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	84.63
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	84.46
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	84.34
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	84.25
1ni5_A	433	Putative cell cycle protein MESJ; structural genom	83.76
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	83.72
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	83.69
4h3v_A	390	Oxidoreductase domain protein; structural genomics	83.54
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	83.47
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	83.14
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	83.12
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	82.33
1ydw_A	362	AX110P-like protein; structural genomics, protein	81.69
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	81.64
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	80.8
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	80.28

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=100.00  E-value=1.7e-54  Score=403.48  Aligned_cols=208  Identities=31%  Similarity=0.467  Sum_probs=189.5

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccceee
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV  120 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~~~  120 (281)
                      .+++||++|+||||||++||++|+++|+||+|++|++++.+|.||||++++.|+...+.++|+++|++++++++|+   |
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~la~~l~m~---~   97 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTPIAEEFSMD---W   97 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHHHHHHHTCE---E
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHHHHHHhCCe---e
Confidence            6799999999999999999999999999999999999888999999999998864578999999999999999998   5


Q ss_pred             eecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCC--hHHH
Q 023530          121 RVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENE--REEE  197 (281)
Q Consensus       121 ~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~~--~e~~  197 (281)
                      ++.++++++|||||+||+||||++|++++++|+++++|++||||||   ++  .++|+++|||+++++ .+.++  +|++
T Consensus        98 ~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~I~~Visn~~---~~--~~~A~~~gIp~~~~~~~~~~r~~~~~~  172 (302)
T 3o1l_A           98 RITDSAQKKRVVLMASRESHCLADLLHRWHSDELDCDIACVISNHQ---DL--RSMVEWHDIPYYHVPVDPKDKEPAFAE  172 (302)
T ss_dssp             EEEETTSCCEEEEEECSCCHHHHHHHHHHHTTCSCSEEEEEEESSS---TT--HHHHHTTTCCEEECCCCSSCCHHHHHH
T ss_pred             eecccCCCcEEEEEEeCCchhHHHHHHHHHCCCCCcEEEEEEECcH---HH--HHHHHHcCCCEEEcCCCcCCHHHHHHH
Confidence            6677888999999999999999999999999999999999999994   43  578999999999997 33333  3567


Q ss_pred             HHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Ccce
Q 023530          198 LLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLC  260 (281)
Q Consensus       198 l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~  260 (281)
                      +.+.|+  ++|+|||||||||||++|++.|++||||   ||||+|||+    .|+|||+.+|++  |||+
T Consensus       173 ~~~~l~~~~~DliVlagym~IL~~~~l~~~~~~~INiHpSlLP~frG~----~p~~~Ai~~G~k~tG~Tv  238 (302)
T 3o1l_A          173 VSRLVGHHQADVVVLARYMQILPPQLCREYAHQVINIHHSFLPSFVGA----KPYHQASLRGVKLIGATC  238 (302)
T ss_dssp             HHHHHHHTTCSEEEESSCCSCCCTTHHHHTTTCEEEEESSCTTSSCSS----CHHHHHHHHTCSEEEEEE
T ss_pred             HHHHHHHhCCCEEEHhHhhhhcCHHHHhhhhCCeEEeCcccccCCCCc----cHHHHHHHcCCCeEEEEE
Confidence            889998  8999999999999999999999999999   999999997    899999999974  6654

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=100.00  E-value=1.5e-53  Score=395.48  Aligned_cols=213  Identities=22%  Similarity=0.391  Sum_probs=188.0

Q ss_pred             CCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeC--CCCCCHHHHHHHHHHHhhhh
Q 023530           36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD--PIKWPREQMDEDFFKLSKMF  113 (281)
Q Consensus        36 ~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p--~~~~~~~~L~~~L~~la~~l  113 (281)
                      |+....+++||++|+||||||++||++|+++|+||+|++|+++..+|.||||++|+.+  +...+.++|+++|+++|+++
T Consensus         4 ~~~~~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~~~   83 (292)
T 3lou_A            4 VPQRPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIAERF   83 (292)
T ss_dssp             ----CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHHHHH
T ss_pred             CcCCCCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHHHHhc
Confidence            5555678999999999999999999999999999999999988889999999999987  43468999999999999999


Q ss_pred             cccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCC-CCC
Q 023530          114 NAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KEN  192 (281)
Q Consensus       114 ~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~-k~~  192 (281)
                      +++   |++.+.++++||+||+||+||||++|+++++.|+++++|++||||||   ++  .++|+++|||+++++. +.+
T Consensus        84 ~m~---~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~---~~--~~~A~~~gIp~~~~~~~~~~  155 (292)
T 3lou_A           84 RMQ---WAIHDVAARPKVLIMVSKLEHCLADLLFRWKMGELKMDIVGIVSNHP---DF--APLAAQHGLPFRHFPITADT  155 (292)
T ss_dssp             TCE---EEEEETTSCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESSS---TT--HHHHHHTTCCEEECCCCSSC
T ss_pred             CcE---EEeeccCCCCEEEEEEcCCCcCHHHHHHHHHcCCCCcEEEEEEeCcH---HH--HHHHHHcCCCEEEeCCCcCC
Confidence            998   56777888999999999999999999999999999999999999994   44  4679999999999883 322


Q ss_pred             C--hHHHHHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Ccce
Q 023530          193 E--REEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLC  260 (281)
Q Consensus       193 ~--~e~~l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~  260 (281)
                      +  +|+++.+.|+  ++|+|||||||||||++|++.|++||||   ||||+|||+    .|+|||+.+|++  |||+
T Consensus       156 r~~~~~~~~~~l~~~~~Dlivla~y~~il~~~~l~~~~~~~iNiHpSlLP~~rG~----~p~~~Ai~~G~~~~G~Tv  228 (292)
T 3lou_A          156 KAQQEAQWLDVFETSGAELVILARYMQVLSPEASARLANRAINIHHSFLPGFKGA----KPYHQAHARGVKLIGATA  228 (292)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHTTTSEEEEEEECSSCCCSS----CHHHHHHHHTCSEEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCEEEecCchhhCCHHHHhhhcCCeEEeCCCcCcCCCCc----cHHHHHHHcCCCeEEEEE
Confidence            2  3567889998  8999999999999999999999999999   999999997    899999999984  6554

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=100.00  E-value=3e-53  Score=392.52  Aligned_cols=211  Identities=21%  Similarity=0.324  Sum_probs=189.0

Q ss_pred             CCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhccc
Q 023530           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (281)
Q Consensus        37 ~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~  116 (281)
                      +....+++||++|+||||||++||++|+++|+||+|++|+++..+|.||||++++.|+ ..+.++|+++|+++|++++++
T Consensus         3 ~~~~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-~~~~~~L~~~f~~la~~l~m~   81 (286)
T 3n0v_A            3 SRAPDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD-DFDEAGFRAGLAERSEAFGMA   81 (286)
T ss_dssp             ----CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS-SCCHHHHHHHHHHHHGGGTCE
T ss_pred             cccCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC-CCCHHHHHHHHHHHHHHcCCE
Confidence            3335679999999999999999999999999999999999888899999999999987 788999999999999999998


Q ss_pred             ceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCC-CCCC--
Q 023530          117 RSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KENE--  193 (281)
Q Consensus       117 ~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~-k~~~--  193 (281)
                         |++.+.++++||+||+||+||||++|++++++|+++++|++||||||   ++  .++|+++|||+++++. +.++  
T Consensus        82 ---~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~---~~--~~~A~~~gIp~~~~~~~~~~r~~  153 (286)
T 3n0v_A           82 ---FELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVVSNHP---DL--EPLAHWHKIPYYHFALDPKDKPG  153 (286)
T ss_dssp             ---EEEECTTCCCEEEEEESSCCHHHHHHHHHHHTTSSCCEEEEEEESSS---TT--HHHHHHTTCCEEECCCBTTBHHH
T ss_pred             ---EEeecCCCCcEEEEEEeCCCCCHHHHHHHHHCCCCCcEEEEEEeCcH---HH--HHHHHHcCCCEEEeCCCcCCHHH
Confidence               56778888999999999999999999999999999999999999994   44  4679999999999883 3222  


Q ss_pred             hHHHHHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcC--CCcce
Q 023530          194 REEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTD--KGCLC  260 (281)
Q Consensus       194 ~e~~l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d--~g~~~  260 (281)
                      +|+++.+.|+  ++|+|||||||||||++|++.|++||||   ||||+|||+    .|+|||+.+|+  +|||+
T Consensus       154 ~~~~~~~~l~~~~~Dlivla~y~~il~~~~l~~~~~~~iNiHpSlLP~~rG~----~p~~~Ai~~G~~~~G~Tv  223 (286)
T 3n0v_A          154 QERKVLQVIEETGAELVILARYMQVLSPELCRRLDGWAINIHHSLLPGFKGA----KPYHQAYNKGVKMVGATA  223 (286)
T ss_dssp             HHHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHTTTSEEEEEECSSTTCCCS----CHHHHHHHHTCSEEEEEE
T ss_pred             HHHHHHHHHHhcCCCEEEecccccccCHHHHhhhcCCeEEeccccccCCCCc----cHHHHHHHcCCCeEEEEE
Confidence            3567889998  8999999999999999999999999999   999999997    89999999997  45554

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=100.00  E-value=1.8e-53  Score=394.41  Aligned_cols=209  Identities=26%  Similarity=0.399  Sum_probs=189.1

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccceee
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV  120 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~~~  120 (281)
                      .+++||++|+||||||++||++|+++|+||+|++|+++..+|.||||+++++|+...+.++|+++|++++++++|+   |
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~la~~~~m~---~   81 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMG---W   81 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHHHHHHTTCE---E
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHHHHHHcCCE---E
Confidence            4699999999999999999999999999999999998888999999999999875578999999999999999998   5


Q ss_pred             eecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCC-CCCC--hHHH
Q 023530          121 RVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KENE--REEE  197 (281)
Q Consensus       121 ~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~-k~~~--~e~~  197 (281)
                      ++.+.++++|||||+||+||||++|++++++|+++++|++||||||  ++  +.++|+++|||+++++. +.++  +|++
T Consensus        82 ~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Visn~p--~~--~~~~A~~~gIp~~~~~~~~~~r~~~~~~  157 (288)
T 3obi_A           82 HMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHP--RE--TFSGFDFGDIPFYHFPVNKDTRRQQEAA  157 (288)
T ss_dssp             EEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESSC--GG--GSCCTTTTTCCEEECCCCTTTHHHHHHH
T ss_pred             EeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEcCCC--hh--HHHHHHHcCCCEEEeCCCcccHHHHHHH
Confidence            6777888999999999999999999999999999999999999983  12  45789999999999983 3222  3567


Q ss_pred             HHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Ccce
Q 023530          198 LLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLC  260 (281)
Q Consensus       198 l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~  260 (281)
                      +.+.|+  ++|+|||||||||||++|++.|++||||   ||||+|||+    .|+|||+.+|++  |||+
T Consensus       158 ~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~~iNiHpSlLP~~rG~----~p~~~A~~~G~~~~G~Tv  223 (288)
T 3obi_A          158 ITALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGA----KPYHQAFDRGVKLIGATA  223 (288)
T ss_dssp             HHHHHHHHTCCEEEESSCCSCCCHHHHHHTTTSEEEEEEECSSCCCSS----CHHHHHHHHTCSEEEEEE
T ss_pred             HHHHHHhcCCCEEEhhhhhhhCCHHHHhhhcCCeEEeCcccccCCCCc----hHHHHHHHcCCCEEEEEE
Confidence            889988  8999999999999999999999999999   999999997    899999999974  6555

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=100.00  E-value=1e-53  Score=395.81  Aligned_cols=208  Identities=27%  Similarity=0.404  Sum_probs=186.2

Q ss_pred             cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhccccee
Q 023530           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV  119 (281)
Q Consensus        40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~~  119 (281)
                      ..+++||++|+||||||++||++|+++|+||+|++|+++..+|.||||++++.+.  .+.++|+++|++++++++|+   
T Consensus         5 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~L~~~f~~la~~~~m~---   79 (287)
T 3nrb_A            5 NNQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV--AGVNDFNSAFGKVVEKYNAE---   79 (287)
T ss_dssp             TTEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC-----CHHHHHHHHHHGGGTCE---
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC--CCHHHHHHHHHHHHHHcCCe---
Confidence            4679999999999999999999999999999999999888899999999999875  35679999999999999998   


Q ss_pred             eeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCC-CC--hHH
Q 023530          120 VRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-NE--REE  196 (281)
Q Consensus       120 ~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~-~~--~e~  196 (281)
                      |++.++++++|||||+||+||||++|++++++|+++++|++|||||   +++ +.++|+++|||+++++.+. ++  +|+
T Consensus        80 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Visn~---~~a-~~~~A~~~gIp~~~~~~~~~~r~~~~~  155 (287)
T 3nrb_A           80 WWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDMEVVGIISNH---PRE-ALSVSLVGDIPFHYLPVTPATKAAQES  155 (287)
T ss_dssp             EEEEETTCCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESS---CGG-GCCCCCCTTSCEEECCCCGGGHHHHHH
T ss_pred             eEeeccCCCcEEEEEEeCCCcCHHHHHHHHHCCCCCeEEEEEEeCC---hHH-HHHHHHHcCCCEEEEeccCcchhhHHH
Confidence            5667788899999999999999999999999999999999999999   444 6789999999999998332 22  356


Q ss_pred             HHHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Ccce
Q 023530          197 ELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLC  260 (281)
Q Consensus       197 ~l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~  260 (281)
                      ++++.|+  ++|+|||||||||||++|++.|++||||   ||||+|||+    .|+|||+.+|++  |||+
T Consensus       156 ~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~~~iNiHpSlLP~~rG~----~p~~~Ai~~G~k~tG~Tv  222 (287)
T 3nrb_A          156 QIKNIVTQSQADLIVLARYMQILSDDLSAFLSGRCINIHHSFLPGFKGA----KPYHQAHTRGVKLIGATA  222 (287)
T ss_dssp             HHHHHHHHHTCSEEEESSCCSCCCHHHHHHHTTSEEEEESSCTTTTCSS----CHHHHHHHHTCSEEEEEE
T ss_pred             HHHHHHHHhCCCEEEhhhhhhhcCHHHHhhccCCeEEECcccccCCCCc----hHHHHHHHcCCCeEEEEE
Confidence            7889888  8999999999999999999999999999   999999997    899999999974  5554

>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}

Probab=99.97  E-value=7.9e-32  Score=239.30  Aligned_cols=126  Identities=23%  Similarity=0.282  Sum_probs=113.3

Q ss_pred             CeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCC---hHHHHHHHHh
Q 023530          128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENE---REEELLELVQ  203 (281)
Q Consensus       128 ~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~~---~e~~l~~~L~  203 (281)
                      |+|||||+||+||||++|+++++.|+++++|++||||+   ++++++++|+++|||+++++ .+..+   +|+++.+.|+
T Consensus         2 m~riavl~Sg~Gsnl~ali~~~~~~~l~~eI~~Visn~---~~a~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~   78 (211)
T 3p9x_A            2 MKRVAIFASGSGTNAEAIIQSQKAGQLPCEVALLITDK---PGAKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLK   78 (211)
T ss_dssp             -CEEEEECCTTCHHHHHHHHHHHTTCCSSEEEEEEESC---SSSHHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEEeCCchHHHHHHHHHHcCCCCcEEEEEEECC---CCcHHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHH
Confidence            68999999999999999999999999999999999998   67899999999999999987 33322   2567888888


Q ss_pred             --CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Ccce
Q 023530          204 --NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLC  260 (281)
Q Consensus       204 --~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~  260 (281)
                        ++|+||+||||+||+++|++.|+++|||   ||||+|||+    .|++||+++|++  |||+
T Consensus        79 ~~~~Dliv~agy~~Il~~~~l~~~~~~~iNiHpSLLP~yrG~----~pi~~Ai~~G~~~tGvTv  138 (211)
T 3p9x_A           79 EKQIDFVVLAGYMRLVGPTLLGAYEGRIVNIHPSLLPAFPGL----HAIEQAIRANVKVTGVTI  138 (211)
T ss_dssp             HTTCCEEEESSCCSCCCHHHHHHHTTSEEEEESSCTTSSCSS----CHHHHHHHTTCSEEEEEE
T ss_pred             hcCCCEEEEeCchhhcCHHHHhhccCCeEEECCccCCCCCCc----cHHHHHHHcCCCeEEEEE
Confidence              8999999999999999999999999999   999999997    999999999974  5554

>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0

Probab=99.97  E-value=5.4e-31  Score=234.58  Aligned_cols=127  Identities=20%  Similarity=0.251  Sum_probs=113.3

Q ss_pred             CCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCC---hHHHHHHH
Q 023530          126 DPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENE---REEELLEL  201 (281)
Q Consensus       126 ~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~~---~e~~l~~~  201 (281)
                      .+++|||||+||+||||++|++++++| ++++|++||||+   ++++++++|+++|||+++++ .+..+   +|+++.+.
T Consensus         3 ~~~~riavl~SG~Gsnl~all~~~~~~-~~~eI~~Vis~~---~~a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~   78 (215)
T 3tqr_A            3 REPLPIVVLISGNGTNLQAIIGAIQKG-LAIEIRAVISNR---ADAYGLKRAQQADIPTHIIPHEEFPSRTDFESTLQKT   78 (215)
T ss_dssp             -CCEEEEEEESSCCHHHHHHHHHHHTT-CSEEEEEEEESC---TTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEEeCCcHHHHHHHHHHHcC-CCCEEEEEEeCC---cchHHHHHHHHcCCCEEEeCccccCchhHhHHHHHHH
Confidence            457899999999999999999999999 999999999998   67889999999999999987 32222   35678888


Q ss_pred             Hh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Ccce
Q 023530          202 VQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLC  260 (281)
Q Consensus       202 L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~  260 (281)
                      |+  ++|+||+|||||||+++|++.|+++|||   ||||+|||+    .+++||+++|++  |||+
T Consensus        79 l~~~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSLLP~yrG~----~pi~~Ai~~G~~~tGvTv  140 (215)
T 3tqr_A           79 IDHYDPKLIVLAGFMRKLGKAFVSHYSGRMINIHPSLLPKYTGL----NTHERALAAGETEHGVSV  140 (215)
T ss_dssp             HHTTCCSEEEESSCCSCCCHHHHHHTTTSEEEEESSSTTTTCSS----CHHHHHHHTTCSEEEEEE
T ss_pred             HHhcCCCEEEEccchhhCCHHHHhhccCCeEEeCcccCCCCCCh----hHHHHHHHcCCCeEEEEE
Confidence            88  8999999999999999999999999999   999999997    999999999975  5544

>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}

Probab=99.97  E-value=8.7e-31  Score=232.34  Aligned_cols=126  Identities=20%  Similarity=0.220  Sum_probs=113.1

Q ss_pred             CeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCC-CCCC---hHHHHHHHHh
Q 023530          128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KENE---REEELLELVQ  203 (281)
Q Consensus       128 ~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~-k~~~---~e~~l~~~L~  203 (281)
                      ++||+||+||+||||++|++++++|.++++|++||||+   |+++++++|+++|||+++++. +...   +|+++.+.|+
T Consensus         7 ~~ri~vl~SG~gsnl~all~~~~~~~l~~~I~~Visn~---~~a~~l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~   83 (209)
T 4ds3_A            7 RNRVVIFISGGGSNMEALIRAAQAPGFPAEIVAVFSDK---AEAGGLAKAEAAGIATQVFKRKDFASKEAHEDAILAALD   83 (209)
T ss_dssp             CEEEEEEESSCCHHHHHHHHHHTSTTCSEEEEEEEESC---TTCTHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHH
T ss_pred             CccEEEEEECCcHHHHHHHHHHHcCCCCcEEEEEEECC---cccHHHHHHHHcCCCEEEeCccccCCHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999998   677899999999999999873 3222   2567888888


Q ss_pred             --CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Ccce
Q 023530          204 --NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLC  260 (281)
Q Consensus       204 --~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~  260 (281)
                        ++|+||+|||||||+++|++.|+++|||   ||||+|||+    .|++||+++|++  |||+
T Consensus        84 ~~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSLLP~yrG~----~pi~~Ai~~G~~~tGvTv  143 (209)
T 4ds3_A           84 VLKPDIICLAGYMRLLSGRFIAPYEGRILNIHPSLLPLFPGL----HTHQRALDAGMKLAGCTV  143 (209)
T ss_dssp             HHCCSEEEESSCCSCCCHHHHGGGTTCEEEEESSCTTSSCSS----CHHHHHHHTTCSEEEEEE
T ss_pred             hcCCCEEEEeccccCcCHHHHhhccCCeEEECCccccCCCCh----hHHHHHHHcCCCeEEEEE
Confidence              8999999999999999999999999999   999999997    999999999974  4444

>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0

Probab=99.97  E-value=8.8e-31  Score=233.20  Aligned_cols=127  Identities=22%  Similarity=0.272  Sum_probs=112.3

Q ss_pred             CCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh--
Q 023530          126 DPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--  203 (281)
Q Consensus       126 ~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~--  203 (281)
                      .+++||+||+||+||||++|+++++++.++++|++||||+   |+++++++|+++|||+++++.+..+ ++++.+.|+  
T Consensus         6 ~~~~ri~vl~SG~gsnl~all~~~~~~~~~~~I~~Vis~~---~~a~~l~~A~~~gIp~~~~~~~~~~-~~~~~~~L~~~   81 (215)
T 3kcq_A            6 KKELRVGVLISGRGSNLEALAKAFSTEESSVVISCVISNN---AEARGLLIAQSYGIPTFVVKRKPLD-IEHISTVLREH   81 (215)
T ss_dssp             -CCEEEEEEESSCCHHHHHHHHHTCCC-CSEEEEEEEESC---TTCTHHHHHHHTTCCEEECCBTTBC-HHHHHHHHHHT
T ss_pred             CCCCEEEEEEECCcHHHHHHHHHHHcCCCCcEEEEEEeCC---cchHHHHHHHHcCCCEEEeCcccCC-hHHHHHHHHHh
Confidence            5678999999999999999999999999999999999998   6778999999999999998743222 357888888  


Q ss_pred             CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Ccce
Q 023530          204 NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLC  260 (281)
Q Consensus       204 ~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~  260 (281)
                      ++|+||+|||||||+++|++.|+++|||   ||||+|||+    .|++||+++|++  |||+
T Consensus        82 ~~Dlivlagy~~IL~~~~l~~~~~~~iNiHpSLLP~yrG~----~pi~~Ai~~G~~~tGvTv  139 (215)
T 3kcq_A           82 DVDLVCLAGFMSILPEKFVTDWHHKIINIHPSLLPSFKGL----NAQEQAYKAGVKIAGCTL  139 (215)
T ss_dssp             TCSEEEESSCCSCCCHHHHHHTTTSEEEEESSCTTTTCSS----CHHHHHHHHTCSEEEEEE
T ss_pred             CCCEEEEeCCceEeCHHHHhhccCCeEEECcccccCCCCc----cHHHHHHHcCCCeEEEEE
Confidence            8999999999999999999999999999   999999997    999999999974  5544

>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*

Probab=99.97  E-value=4.8e-30  Score=228.47  Aligned_cols=127  Identities=15%  Similarity=0.118  Sum_probs=111.4

Q ss_pred             CCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCC-CCC---hHHHHHH
Q 023530          125 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENE---REEELLE  200 (281)
Q Consensus       125 ~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k-~~~---~e~~l~~  200 (281)
                      +..++||+||+||+||||++|+++++. .++++|++|+||+    +++++++|+++|||+++++.+ ..+   +|+++.+
T Consensus         9 ~~~~~ri~vl~SG~gsnl~all~~~~~-~~~~eI~~Vis~~----~a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~   83 (215)
T 3da8_A            9 PSAPARLVVLASGTGSLLRSLLDAAVG-DYPARVVAVGVDR----ECRAAEIAAEASVPVFTVRLADHPSRDAWDVAITA   83 (215)
T ss_dssp             CCSSEEEEEEESSCCHHHHHHHHHSST-TCSEEEEEEEESS----CCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHH
T ss_pred             CCCCcEEEEEEeCChHHHHHHHHHHhc-cCCCeEEEEEeCC----chHHHHHHHHcCCCEEEeCcccccchhhhhHHHHH
Confidence            467889999999999999999999865 6789999999996    378999999999999998722 222   2567888


Q ss_pred             HHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Ccce
Q 023530          201 LVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLC  260 (281)
Q Consensus       201 ~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~  260 (281)
                      .|+  ++|+||+|||||||+++|++.|+++|||   ||||+|||+    .|++||+++|++  |||+
T Consensus        84 ~l~~~~~Dlivlagy~~iL~~~~l~~~~~~~iNiHpSLLP~yrG~----~pi~~Ai~~G~~~tGvTv  146 (215)
T 3da8_A           84 ATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGT----HGVADALAYGVKVTGATV  146 (215)
T ss_dssp             HHHTTCCSEEEEEECCSCCCHHHHHHHTTTEEEEESSCTTSSCST----THHHHHHHHTCSEEEEEE
T ss_pred             HHHhhCCCEEEEcCchhhCCHHHHhhccCCeEEeCcccccCCCCc----hHHHHHHHcCCCeEEEEE
Confidence            888  8999999999999999999999999999   999999997    999999999974  5544

>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*

Probab=99.96  E-value=1.8e-29  Score=223.71  Aligned_cols=126  Identities=21%  Similarity=0.188  Sum_probs=111.8

Q ss_pred             eeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCC---hHHHHHHHHh-
Q 023530          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENE---REEELLELVQ-  203 (281)
Q Consensus       129 ~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~~---~e~~l~~~L~-  203 (281)
                      +|||||+||+|+||++|++++++++++++|++|+||+   +++.++++|+++|||+++++ .+..+   +|+++.+.|+ 
T Consensus         1 ~riaVl~SG~Gs~L~aLi~~~~~~~~~~~I~~Vvs~~---~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~   77 (209)
T 1meo_A            1 ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNK---AAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEE   77 (209)
T ss_dssp             CEEEEEESSSCTTHHHHHHHHHSTTCSCEEEEEEESS---TTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEEECCchHHHHHHHHHhcCCCCcEEEEEEeCC---CChHHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHh
Confidence            4899999999999999999999999889999999997   56789999999999999887 32222   2467888888 


Q ss_pred             -CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Cccee
Q 023530          204 -NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLCS  261 (281)
Q Consensus       204 -~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~~  261 (281)
                       ++|+||+||||+||+++|++.|+++|||   ||||+|||+    .|++||+++|++  |||+-
T Consensus        78 ~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpSLLP~yrG~----~pi~~Ai~~G~~~tGvTvh  137 (209)
T 1meo_A           78 FSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGS----NAHEQALETGVTVTGCTVH  137 (209)
T ss_dssp             TTCCEEEEESCCSCCCHHHHHHTTTSEEEEESSSTTSSCSS----CHHHHHHHHTCSEEEEEEE
T ss_pred             cCCCEEEEcchhhhCCHHHHhhhcCCEEEEccCcCcCCCCc----cHHHHHHHcCCCcEEEEEE
Confidence             8999999999999999999999999999   999999997    999999999984  55543

>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*

Probab=99.96  E-value=1.9e-29  Score=224.04  Aligned_cols=125  Identities=21%  Similarity=0.229  Sum_probs=111.7

Q ss_pred             eeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCC---hHHHHHHHHh-
Q 023530          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENE---REEELLELVQ-  203 (281)
Q Consensus       129 ~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~~---~e~~l~~~L~-  203 (281)
                      +|||||+||+||||++|++++++++++++|++|+||+   ++++++++|+++|||+++++ .+..+   +++++.+.|+ 
T Consensus         1 ~ri~vl~Sg~gsnl~ali~~~~~~~~~~~i~~Vis~~---~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~   77 (212)
T 1jkx_A            1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNK---ADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDM   77 (212)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHHTTSSSSEEEEEEESC---TTCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGG
T ss_pred             CEEEEEEECCcHHHHHHHHHHHcCCCCceEEEEEeCC---CchHHHHHHHHcCCcEEEeCcccccchhhccHHHHHHHHh
Confidence            5899999999999999999999999999999999997   56789999999999999987 33222   2567888888 


Q ss_pred             -CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Ccce
Q 023530          204 -NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLC  260 (281)
Q Consensus       204 -~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~  260 (281)
                       ++|+||+|||||||+++|++.|+++|||   ||||+|||+    .|++||+++|++  |||+
T Consensus        78 ~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSlLP~yrG~----~pi~~ai~~G~~~tGvTv  136 (212)
T 1jkx_A           78 YAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGL----HTHRQALENGDEEHGTSV  136 (212)
T ss_dssp             GCCSEEEESSCCSCCCHHHHHHTTTSEEEEESSCTTSCCSS----CHHHHHHHTTCSEEEEEE
T ss_pred             cCCCEEEEeChhhhCCHHHHhhccCCEEEEccCcccCCCCc----cHHHHHHHcCCCceEEEE
Confidence             8999999999999999999999999999   999999997    899999999974  4444

>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}

Probab=99.96  E-value=5.7e-29  Score=220.80  Aligned_cols=127  Identities=19%  Similarity=0.235  Sum_probs=112.8

Q ss_pred             CCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCC---hHHHHHHHH
Q 023530          127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENE---REEELLELV  202 (281)
Q Consensus       127 ~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~~---~e~~l~~~L  202 (281)
                      +|+||+||+||+|+|++++++++.++.++++|++|+||+   ++++++++|+++|||+++++ .+..+   +|+++.+.|
T Consensus         2 ~m~ki~vl~sG~g~~~~~~l~~l~~~~l~~~I~~Vit~~---~~~~v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l   78 (212)
T 3av3_A            2 HMKRLAVFASGSGTNFQAIVDAAKRGDLPARVALLVCDR---PGAKVIERAARENVPAFVFSPKDYPSKAAFESEILREL   78 (212)
T ss_dssp             CCEEEEEECCSSCHHHHHHHHHHHTTCCCEEEEEEEESS---TTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEEECCcHHHHHHHHHHHhCCCCCeEEEEEeCC---CCcHHHHHHHHcCCCEEEeCcccccchhhhHHHHHHHH
Confidence            478999999999999999999999998889999999997   57799999999999999987 33222   256788888


Q ss_pred             h--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Ccce
Q 023530          203 Q--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLC  260 (281)
Q Consensus       203 ~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~  260 (281)
                      +  ++|+||+|||||||+++|++.|+++|||   ||||+|||+    .|++||+++|++  |||+
T Consensus        79 ~~~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpSLLP~yrG~----~pi~~Ai~~G~~~tGvTv  139 (212)
T 3av3_A           79 KGRQIDWIALAGYMRLIGPTLLSAYEGKIVNIHPSLLPAFPGK----DAIGQAYRAGVSETGVTV  139 (212)
T ss_dssp             HHTTCCEEEESSCCSCCCHHHHHHTTTCEEEEESSCTTSSCST----THHHHHHHHTCSEEEEEE
T ss_pred             HhcCCCEEEEchhhhhCCHHHHhhhcCCEEEEecCcCCCCCCc----CHHHHHHHcCCCeEEEEE
Confidence            8  8999999999999999999999999999   999999997    999999999974  4444

>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}

Probab=99.96  E-value=7.7e-29  Score=222.54  Aligned_cols=132  Identities=23%  Similarity=0.228  Sum_probs=116.1

Q ss_pred             ecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCC---hHHH
Q 023530          122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENE---REEE  197 (281)
Q Consensus       122 ~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~~---~e~~  197 (281)
                      +.+++.|+||+||+||+|+|++++++++.++.++++|++||||+   ++++++++|+++|||+++++ .+...   +|++
T Consensus        16 ~~~~~~~~rI~~l~SG~g~~~~~~l~~l~~~~~~~~I~~Vvt~~---~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~   92 (229)
T 3auf_A           16 LYFQGHMIRIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDR---ADAYGLERARRAGVDALHMDPAAYPSRTAFDAA   92 (229)
T ss_dssp             SSCBTTCEEEEEEESSCCHHHHHHHHHHHTTSSSEEEEEEEESS---TTCHHHHHHHHTTCEEEECCGGGSSSHHHHHHH
T ss_pred             ccccCCCcEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEcCC---CchHHHHHHHHcCCCEEEECcccccchhhccHH
Confidence            34567789999999999999999999999888889999999997   57789999999999999987 33222   2567


Q ss_pred             HHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Ccce
Q 023530          198 LLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLC  260 (281)
Q Consensus       198 l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~  260 (281)
                      +.+.|+  ++|+||+|||||||+++|++.|+++|||   ||||+|||+    .|++||+++|++  |||+
T Consensus        93 ~~~~l~~~~~Dliv~agy~~IL~~~~l~~~~~~~iNiHpSLLP~yrG~----~pi~~Ai~~G~~~tGvTv  158 (229)
T 3auf_A           93 LAERLQAYGVDLVCLAGYMRLVRGPMLTAFPNRILNIHPSLLPAFPGL----EAQRQALEHGVKVAGCTV  158 (229)
T ss_dssp             HHHHHHHTTCSEEEESSCCSCCCHHHHHHSTTCEEEEESSCTTSSCSS----CHHHHHHHHTCSEEEEEE
T ss_pred             HHHHHHhcCCCEEEEcChhHhCCHHHHhhccCCEEEEccCcCcCCCCc----CHHHHHHHcCCCeEEEEE
Confidence            888888  8999999999999999999999999999   999999997    999999999984  5544

>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}

Probab=99.95  E-value=3e-28  Score=216.70  Aligned_cols=126  Identities=21%  Similarity=0.276  Sum_probs=111.6

Q ss_pred             CeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCC-CCCC---hHHHHHHHHh
Q 023530          128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KENE---REEELLELVQ  203 (281)
Q Consensus       128 ~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~-k~~~---~e~~l~~~L~  203 (281)
                      |+||+||+||+|+|++++++++.++.++++|++|+||+   ++++++++|+++|||+++++. +..+   +++++.+.|+
T Consensus         1 m~rI~vl~SG~g~~~~~~l~~l~~~~~~~~i~~Vvs~~---~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~   77 (216)
T 2ywr_A            1 MLKIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDN---PKAYAIERCKKHNVECKVIQRKEFPSKKEFEERMALELK   77 (216)
T ss_dssp             CEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESC---TTCHHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEeCC---CChHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHH
Confidence            57999999999999999999999888788999999997   567899999999999999873 2222   2467888888


Q ss_pred             --CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Ccce
Q 023530          204 --NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLC  260 (281)
Q Consensus       204 --~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~  260 (281)
                        ++|+||+|||||||+++|++.|+++|||   ||||+|||+    .|++||+++|++  |||+
T Consensus        78 ~~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpSLLP~yrG~----~pi~~ai~~G~~~tGvTv  137 (216)
T 2ywr_A           78 KKGVELVVLAGFMRILSHNFLKYFPNKVINIHPSLIPAFQGL----HAQKQAVEFGVKFSGCTV  137 (216)
T ss_dssp             HTTCCEEEESSCCSCCCHHHHTTSTTCEEEEESSCTTTTCST----THHHHHHHHTCSEEEEEE
T ss_pred             hcCCCEEEEeCchhhCCHHHHhhccCCeEEEcCCcCcCCCCc----cHHHHHHHcCCCeEEEEE
Confidence              8999999999999999999999999999   999999997    899999999984  5554

>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A

Probab=99.89  E-value=3.8e-23  Score=193.19  Aligned_cols=121  Identities=17%  Similarity=0.190  Sum_probs=102.1

Q ss_pred             CCeeEEEEeeCC--hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC--------hhHHHHHHhCCCCEEEeCCCCCChHH
Q 023530          127 PKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPN--------SHVIRFLERHGIPYHYLCAKENEREE  196 (281)
Q Consensus       127 ~~~rIavl~Sg~--GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~--------a~~~~~A~~~gIP~~~i~~k~~~~e~  196 (281)
                      .++||+||+|+.  .+||++|++.   |   ++|++|+|| ||+|.        +++.++|+++|||++... +. + ++
T Consensus         2 ~~mrIvf~Gt~~fa~~~L~~L~~~---~---~~i~~Vvt~-pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~-~~-~-~~   71 (314)
T 1fmt_A            2 ESLRIIFAGTPDFAARHLDALLSS---G---HNVVGVFTQ-PDRPAGRGKKLMPSPVKVLAEEKGLPVFQPV-SL-R-PQ   71 (314)
T ss_dssp             CCCEEEEEECSHHHHHHHHHHHHT---T---CEEEEEECC-CCBC------CBCCHHHHHHHHTTCCEECCS-CS-C-SH
T ss_pred             CCCEEEEEecCHHHHHHHHHHHHC---C---CcEEEEEeC-CCCccccccccCcCHHHHHHHHcCCcEEecC-CC-C-CH
Confidence            468999999998  6999999984   4   699999998 66553        689999999999997643 22 1 34


Q ss_pred             HHHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCCCccee
Q 023530          197 ELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDKGCLCS  261 (281)
Q Consensus       197 ~l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~g~~~~  261 (281)
                      ++.+.|+  ++|+||+||||+||+++|++.|+++|||   ||||+|||+    +|+|||+++||+=..++
T Consensus        72 ~~~~~l~~~~~Dliv~~~y~~ilp~~il~~~~~g~iNiHpSLLP~yRG~----~pi~~Ai~~G~~~tGvT  137 (314)
T 1fmt_A           72 ENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGA----APIQRSLWAGDAETGVT  137 (314)
T ss_dssp             HHHHHHHHTTCSEEEEESCCSCCCHHHHHSSTTCEEEEESSSTTTTBSS----CHHHHHHHHTCSEEEEE
T ss_pred             HHHHHHHhcCCCEEEEeeccccCCHHHHhhccCCEEEEcCCcCcCCCCc----CHHHHHHHcCCCceEEE
Confidence            5777777  8999999999999999999999999999   999999997    99999999997433333

>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A

Probab=99.88  E-value=4.4e-23  Score=192.03  Aligned_cols=119  Identities=16%  Similarity=0.131  Sum_probs=99.9

Q ss_pred             eeEEEEeeCC--hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC-----hhHHHHHHhCCCCEEEeCCCCCChHHHHHHH
Q 023530          129 YKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLCAKENEREEELLEL  201 (281)
Q Consensus       129 ~rIavl~Sg~--GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~-----a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~  201 (281)
                      |||+||+|+.  ++||++|+++   +   ++|++|+|| ||++.     +++.++|+++|||+++.++.  + +.++.+.
T Consensus         1 mrivf~gt~~fa~~~L~~L~~~---~---~~i~~Vvt~-~d~~~g~~~~~~v~~~A~~~gIpv~~~~~~--~-~~~~~~~   70 (305)
T 2bln_A            1 MKTVVFAYHDMGCLGIEALLAA---G---YEISAIFTH-TDNPGEKAFYGSVARLAAERGIPVYAPDNV--N-HPLWVER   70 (305)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHT---T---CEEEEEECC-CC------CCCCHHHHHHHHTCCEECCSCC--C-SHHHHHH
T ss_pred             CEEEEEEcCHHHHHHHHHHHHC---C---CcEEEEEcC-CCCCCCCcCccHHHHHHHHcCCCEECCCcC--C-cHHHHHH
Confidence            5999999998  7999999985   3   699999998 45432     57999999999999997632  1 2346677


Q ss_pred             Hh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCCCccee
Q 023530          202 VQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDKGCLCS  261 (281)
Q Consensus       202 L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~g~~~~  261 (281)
                      |+  ++|+||+||||+||+++|++.|+++|||   ||||+|||+    +|+|||+++||+=+.++
T Consensus        71 l~~~~~Dliv~~~y~~ilp~~il~~~~~g~iNiHpSLLP~yRG~----~pi~~ai~~G~~~tGvT  131 (305)
T 2bln_A           71 IAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGR----APLNWVLVNGETETGVT  131 (305)
T ss_dssp             HHHTCCSEEEEESCCSCCCHHHHTTCTTCEEEEESSCTTTTEES----CHHHHHHHTTCSEEEEE
T ss_pred             HHhcCCCEEEEeccccccCHHHHhcCcCCEEEecCCcCcCCCCc----cHHHHHHHcCCCcEEEE
Confidence            76  8999999999999999999999999999   999999997    99999999998544443

>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}

Probab=99.87  E-value=5.2e-22  Score=185.88  Aligned_cols=120  Identities=15%  Similarity=0.146  Sum_probs=100.0

Q ss_pred             CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCC--------ChhHHHHHHhCCCCEEEeCCCCCChHHH
Q 023530          128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP--------NSHVIRFLERHGIPYHYLCAKENEREEE  197 (281)
Q Consensus       128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~--------~a~~~~~A~~~gIP~~~i~~k~~~~e~~  197 (281)
                      ++||+||+|...  .||++|+++   +   ++|++|+|+ ||+|        .+++.++|+++|||++... +. + +++
T Consensus         7 ~mrivf~Gt~~fa~~~L~~L~~~---~---~~v~~Vvt~-pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~-~~-~-~~~   76 (318)
T 3q0i_A            7 SLRIVFAGTPDFAARHLAALLSS---E---HEIIAVYTQ-PERPAGRGKKLTASPVKTLALEHNVPVYQPE-NF-K-SDE   76 (318)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTS---S---SEEEEEECC-CC---------CCCHHHHHHHHTTCCEECCS-CS-C-SHH
T ss_pred             CCEEEEEecCHHHHHHHHHHHHC---C---CcEEEEEcC-CCCcccccccCCCCHHHHHHHHcCCCEEccC-cC-C-CHH
Confidence            679999999984  899999984   3   699999998 6654        2688999999999997643 22 2 235


Q ss_pred             HHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCCCccee
Q 023530          198 LLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDKGCLCS  261 (281)
Q Consensus       198 l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~g~~~~  261 (281)
                      +.+.|+  ++|+||+||||+||+++|++.|+++|||   ||||+|||+    +|+|||+++||+=+.++
T Consensus        77 ~~~~l~~~~~Dliv~~~y~~ilp~~~l~~~~~g~iNiHpSlLP~yRG~----~pi~~Ai~~G~~~tGvT  141 (318)
T 3q0i_A           77 SKQQLAALNADLMVVVAYGLLLPKVVLDTPKLGCINVHGSILPRWRGA----APIQRSIWAGDSETGVT  141 (318)
T ss_dssp             HHHHHHTTCCSEEEESSCCSCCCHHHHTSSTTCEEEEESSSTTTTBSS----CHHHHHHHHTCSEEEEE
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHHhhCcCCEEEeCCccCcCCCCc----CHHHHHHHcCCCeEEEE
Confidence            777787  8999999999999999999999999999   999999997    99999999998444443

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=99.86  E-value=4.6e-22  Score=200.22  Aligned_cols=119  Identities=15%  Similarity=0.107  Sum_probs=100.2

Q ss_pred             eeEEEEeeCC--hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC-----hhHHHHHHhCCCCEEEeCCCCCChHHHHHHH
Q 023530          129 YKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLCAKENEREEELLEL  201 (281)
Q Consensus       129 ~rIavl~Sg~--GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~-----a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~  201 (281)
                      +||+||+|+.  ++||++|+++      +++|++|+||+ |++.     ++++++|+++|||++++++..   +.++.+.
T Consensus         1 ~ri~~~~s~~~~~~~l~~l~~~------~~~i~~v~t~~-~~~~~~~~~~~~~~~a~~~~ip~~~~~~~~---~~~~~~~   70 (660)
T 1z7e_A            1 MKTVVFAYHDMGCLGIEALLAA------GYEISAIFTHT-DNPGEKAFYGSVARLAAERGIPVYAPDNVN---HPLWVER   70 (660)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHT------TCEEEEEECCC-C--------CCHHHHHHHHTCCEECCSCTT---SHHHHHH
T ss_pred             CEEEEEEeCHHHHHHHHHHHhC------CCCEEEEEeCC-CCCccCcCccHHHHHHHHcCCCEeccCCCC---cHHHHHH
Confidence            5899999998  7999999985      36999999995 4332     579999999999999876321   2356677


Q ss_pred             Hh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCCCccee
Q 023530          202 VQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDKGCLCS  261 (281)
Q Consensus       202 L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~g~~~~  261 (281)
                      |+  ++|+||+|||||||+++|++.|+++|||   ||||+|||+    .|+|||+++||+=..|+
T Consensus        71 l~~~~~d~iv~~~~~~il~~~~l~~~~~~~iNiH~slLP~~rG~----~p~~~ai~~g~~~~G~t  131 (660)
T 1z7e_A           71 IAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGR----APLNWVLVNGETETGVT  131 (660)
T ss_dssp             HHHHCCSEEEEESCCSCCCHHHHTTCTTCEEEEESSSTTTTCSS----CHHHHHHHTTCSEEEEE
T ss_pred             HHhcCCCEEEEcCcccccCHHHHhcCCCCeEEecCCcCCCCCCc----cHHHHHHHcCCCcEEEE
Confidence            77  9999999999999999999999999999   999999997    89999999997433333

>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}

Probab=99.86  E-value=2.3e-21  Score=181.21  Aligned_cols=120  Identities=17%  Similarity=0.160  Sum_probs=99.8

Q ss_pred             CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCC--------ChhHHHHHHhCCCCEEEeCCCCCChHHH
Q 023530          128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP--------NSHVIRFLERHGIPYHYLCAKENEREEE  197 (281)
Q Consensus       128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~--------~a~~~~~A~~~gIP~~~i~~k~~~~e~~  197 (281)
                      ++||+||+|...  .+|++|+++   +   .+|++|+|+ ||+|        .+++.++|+++|||++... +. + +++
T Consensus         2 ~mrivf~Gtp~fa~~~L~~L~~~---~---~~v~~Vvt~-pd~~~grg~~l~~~~v~~~A~~~gIpv~~~~-~~-~-~~~   71 (314)
T 3tqq_A            2 SLKIVFAGTPQFAVPTLRALIDS---S---HRVLAVYTQ-PDRPSGRGQKIMESPVKEIARQNEIPIIQPF-SL-R-DEV   71 (314)
T ss_dssp             CCEEEEEECSGGGHHHHHHHHHS---S---SEEEEEECC-CC----------CCHHHHHHHHTTCCEECCS-CS-S-SHH
T ss_pred             CcEEEEECCCHHHHHHHHHHHHC---C---CeEEEEEeC-CCCccccCCccCCCHHHHHHHHcCCCEECcc-cC-C-CHH
Confidence            579999999985  789999874   4   599999997 6655        3689999999999987643 22 2 235


Q ss_pred             HHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCCCccee
Q 023530          198 LLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDKGCLCS  261 (281)
Q Consensus       198 l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~g~~~~  261 (281)
                      +.+.|+  ++|+||+||||+||++++++.|+++|||   ||||+|||+    +|+|||+++||+=+.++
T Consensus        72 ~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~----~pi~~Ai~~G~~~tGvT  136 (314)
T 3tqq_A           72 EQEKLIAMNADVMVVVAYGLILPKKALNAFRLGCVNVHASLLPRWRGA----APIQRAILAGDRETGIS  136 (314)
T ss_dssp             HHHHHHTTCCSEEEEESCCSCCCHHHHTSSTTCEEEEESSCTTTTBSS----CHHHHHHHHTCSEEEEE
T ss_pred             HHHHHHhcCCCEEEEcCcccccCHHHHhhCcCCEEEecCccccCCCCc----cHHHHHHHcCCCeeEEE
Confidence            777777  8999999999999999999999999999   999999997    99999999998544444

>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A

Probab=99.85  E-value=1.6e-21  Score=183.28  Aligned_cols=122  Identities=16%  Similarity=0.125  Sum_probs=96.9

Q ss_pred             CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCC--ChhHHHHHHhCCCCEEEeCCCC--CChHHHHHHH
Q 023530          128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKE--NEREEELLEL  201 (281)
Q Consensus       128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~--~a~~~~~A~~~gIP~~~i~~k~--~~~e~~l~~~  201 (281)
                      ++||+||++.+.  .+|++|++.   +   ++|++|+|. ||++  ..++.++|+++|||+++++...  ...++++.+.
T Consensus        22 ~mrIvf~G~~~fa~~~L~~L~~~---~---~~i~~Vvt~-pd~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~   94 (329)
T 2bw0_A           22 SMKIAVIGQSLFGQEVYCHLRKE---G---HEVVGVFTV-PDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAK   94 (329)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHT---T---CEEEEEEEC-CCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHH
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHC---C---CeEEEEEeC-CCcCCCCCHHHHHHHHcCCCEEecCcccccccccHHHHHH
Confidence            479999976543  345555542   3   699999995 5543  3578899999999999987321  1123567787


Q ss_pred             Hh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Ccce
Q 023530          202 VQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLC  260 (281)
Q Consensus       202 L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~  260 (281)
                      |+  ++|+||+||||+||+++|++.|+++|||   ||||+|||+    .|++||+++||+  |||+
T Consensus        95 l~~~~~Dliv~a~y~~ilp~~il~~~~~g~iNiHpSLLP~yRG~----~pi~~Ai~~G~~~tGvTv  156 (329)
T 2bw0_A           95 YQALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGA----SAINWTLIHGDKKGGFSI  156 (329)
T ss_dssp             HHTTCCSEEEESSCSSCCCHHHHTCSTTCEEEEESSCTTTTBSS----CHHHHHHHTTCSEEEEEE
T ss_pred             HHhcCCCEEEEeehhhhCCHHHHhhCcCCEEEEcCCcCcCCCCc----CHHHHHHHcCCCcEEEEE
Confidence            77  8999999999999999999999999999   999999997    999999999984  5544

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=99.73  E-value=4.3e-17  Score=155.33  Aligned_cols=160  Identities=11%  Similarity=0.064  Sum_probs=113.7

Q ss_pred             cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhccccee
Q 023530           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV  119 (281)
Q Consensus        40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~~  119 (281)
                      ..+++||++|+||||||++||++|+++||||+|++|++.  +|.|+|+++|++|....+.++|+++|+.++++++|+|..
T Consensus        10 ~~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~--~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~   87 (415)
T 3p96_A           10 KVSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI--RHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSI   87 (415)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE--CCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEE
Confidence            367999999999999999999999999999999999875  789999999999862225689999999999999998542


Q ss_pred             eeecC----CCCCeeEEEEeeCC--hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCC
Q 023530          120 VRVPD----IDPKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE  193 (281)
Q Consensus       120 ~~~~~----~~~~~rIavl~Sg~--GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~  193 (281)
                      .....    +....-+..+.+..  +..+.++...+.+..++.+-..-+++.+            .+++++++--.+.++
T Consensus        88 ~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~------------~~~~~~~v~~~~~~~  155 (415)
T 3p96_A           88 ERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYP------------VIGLELRVSVPPGAD  155 (415)
T ss_dssp             EECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSS------------SEEEEEEEECCTTCH
T ss_pred             EECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCC------------ceEEEEEeeCCCCCH
Confidence            21111    11122344444444  6888888888777666665555666531            224555532233322


Q ss_pred             h--HHHHHHHHh--CCCEEEEecc
Q 023530          194 R--EEELLELVQ--NTDFLVLARY  213 (281)
Q Consensus       194 ~--e~~l~~~L~--~~DlIVLAgY  213 (281)
                      .  ++++.++.+  ++|++|+..=
T Consensus       156 ~~l~~~l~~l~~~~~vD~~v~~~~  179 (415)
T 3p96_A          156 EALRTALNRVSSEEHVDVAVEDYT  179 (415)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEECS
T ss_pred             HHHHHHHHHHhhhcCcCccccccc
Confidence            2  245666666  8999998763

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=99.59  E-value=9.1e-15  Score=111.15  Aligned_cols=76  Identities=24%  Similarity=0.158  Sum_probs=69.8

Q ss_pred             cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccce
Q 023530           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS  118 (281)
Q Consensus        40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~  118 (281)
                      .+++.|++.|+||||++++||++|+++|+||++++++..  .|.|+|++++++++ ..+.++|.++|++++++++++|.
T Consensus         3 ~~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~--~~~~~~~i~v~~~~-~~~l~~l~~~L~~~~~~~~~~~~   78 (91)
T 1zpv_A            3 AMKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL--DEYFTMMAVVSSDE-KQDFTYLRNEFEAFGQTLNVKIN   78 (91)
T ss_dssp             CEEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEESS-CCCHHHHHHHHHHHHHHHTEEEE
T ss_pred             CceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEE--cCEEEEEEEEEeCC-CCCHHHHHHHHHHHHHHcCCEEE
Confidence            367999999999999999999999999999999999876  38999999999986 67899999999999999999865

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.56  E-value=5.8e-15  Score=128.43  Aligned_cols=80  Identities=19%  Similarity=0.221  Sum_probs=71.6

Q ss_pred             CCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC----CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhh
Q 023530           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE----KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM  112 (281)
Q Consensus        37 ~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~----~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~  112 (281)
                      .....+++|+|.|+||||||++||++|+++|+||.+++|++..    ..+.|+|++++..|. ..+ ++|+++|.+++++
T Consensus        88 ~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~-~~~-~~l~~~l~~~a~~  165 (195)
T 2nyi_A           88 SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF-PLY-QEVVTALSRVEEE  165 (195)
T ss_dssp             CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG-GGH-HHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC-Ccc-HHHHHHHHHHHHH
Confidence            4445779999999999999999999999999999999999864    457999999999986 566 9999999999999


Q ss_pred             hcccce
Q 023530          113 FNAMRS  118 (281)
Q Consensus       113 l~l~~~  118 (281)
                      ++++|.
T Consensus       166 l~~di~  171 (195)
T 2nyi_A          166 FGVDID  171 (195)
T ss_dssp             HTCEEE
T ss_pred             cCeEEE
Confidence            999864

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.46  E-value=3e-13  Score=116.68  Aligned_cols=81  Identities=16%  Similarity=0.142  Sum_probs=71.8

Q ss_pred             CCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC------CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE------KKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        37 ~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~------~~g~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      ......++|+|.|+||||||++||++|+++|+||.++++++..      ..+.|+|++++..|+ +.+.++|+++|.+++
T Consensus        88 ~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~-~~~~~~l~~~l~~~~  166 (192)
T 1u8s_A           88 QTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS-GCNLMQLQEEFDALC  166 (192)
T ss_dssp             CCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT-TSCHHHHHHHHHHHH
T ss_pred             ccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCC-CCCHHHHHHHHHHHH
Confidence            3344779999999999999999999999999999999999864      467999999999986 778999999999999


Q ss_pred             hhhcccce
Q 023530          111 KMFNAMRS  118 (281)
Q Consensus       111 ~~l~l~~~  118 (281)
                      ++++++|.
T Consensus       167 ~~~~~~~~  174 (192)
T 1u8s_A          167 TALDVQGS  174 (192)
T ss_dssp             HHHTCEEE
T ss_pred             HHhCceEE
Confidence            99999854

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.44  E-value=1.4e-12  Score=112.49  Aligned_cols=120  Identities=13%  Similarity=0.102  Sum_probs=84.5

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccceee
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV  120 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~~~  120 (281)
                      .+++|+|.|+||||||++||++|+++|+||++++|++.  .|.|+|++.|..|.  ...++|+++|.+++++++++|..-
T Consensus         5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~--~~~f~~~~~v~~~~--~~~~~l~~~L~~~~~~~~~~~~~~   80 (192)
T 1u8s_A            5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISGSP--SNITRVETTLPLLGQQHDLITMMK   80 (192)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEECH--HHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeec--CCceEEEEEEecCC--CCHHHHHHHHHHHHHhcCCEEEEE
Confidence            36999999999999999999999999999999999874  68999999998774  367899999999999999886422


Q ss_pred             eecCC---CCCeeEEEEeeCC--hhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530          121 RVPDI---DPKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISN  164 (281)
Q Consensus       121 ~~~~~---~~~~rIavl~Sg~--GsnL~aLl~~~~~g~l~~eI~~Visn  164 (281)
                      +....   ....+..+-+++.  ..-+.++...+.+..++.+=.-..+.
T Consensus        81 ~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~  129 (192)
T 1u8s_A           81 RTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTI  129 (192)
T ss_dssp             EECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             eCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcc
Confidence            21111   1123334444444  34455565555555444332333443

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.43  E-value=4.5e-13  Score=116.45  Aligned_cols=93  Identities=12%  Similarity=0.078  Sum_probs=73.9

Q ss_pred             CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCC----HHHHHHHHHHHhhhhc
Q 023530           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWP----REQMDEDFFKLSKMFN  114 (281)
Q Consensus        39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~----~~~L~~~L~~la~~l~  114 (281)
                      +.++++|+|+|+||||||++||++|+++|+||++++|++.  .|.|+|++.+..+. . +    .++|+++|.+++++++
T Consensus         2 ~~~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~--~~~f~m~~~v~~~~-~-~~~~~~~~l~~~L~~~~~~~~   77 (195)
T 2nyi_A            2 ETQSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACL--GGDFAMIVLVSLNA-K-DGKLIQSALESALPGFQISTR   77 (195)
T ss_dssp             CCEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEESS-S-SSHHHHHHHHHHSTTCEEEEE
T ss_pred             CceEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEE--CCeEEEEEEEEecC-c-cchhHHHHHHHHHHHHHHhcC
Confidence            3467999999999999999999999999999999999974  78999999998774 2 4    6889999999988888


Q ss_pred             ccceeeeecC---CCCCeeEEEEeeCC
Q 023530          115 AMRSVVRVPD---IDPKYKVAVLASKQ  138 (281)
Q Consensus       115 l~~~~~~~~~---~~~~~rIavl~Sg~  138 (281)
                      +.|.   +..   .....+..+-++|.
T Consensus        78 ~~~~---~~~~~~~~~~~~~iltv~g~  101 (195)
T 2nyi_A           78 RASS---VAERHVSPDTREYELYVEGP  101 (195)
T ss_dssp             ECCC---C----CCTTEEEEEEEEEEE
T ss_pred             CeEE---EEeCCcCCCCcEEEEEEEeC
Confidence            7753   221   12234555666655

>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1

Probab=99.22  E-value=2.3e-12  Score=117.50  Aligned_cols=58  Identities=12%  Similarity=0.076  Sum_probs=49.6

Q ss_pred             HHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCCCccee
Q 023530          198 LLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDKGCLCS  261 (281)
Q Consensus       198 l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~g~~~~  261 (281)
                      +.+.|+  ++|+||+||||+||+++|++.|  +|||   ||||+|||+    +|+|||+++||+=+.|+
T Consensus        69 ~~~~L~~~~pDliv~~~y~~ilp~~il~~~--g~iNiHpSLLP~yRG~----~pi~~Ai~~G~~~tGvT  131 (260)
T 1zgh_A           69 TFEKVKLINPEYILFPHWSWIIPKEIFENF--TCVVFHMTDLPFGRGG----SPLQNLIERGIKKTKIS  131 (260)
T ss_dssp             CHHHHHHHCCSEEEESSCCSCCCHHHHTTS--CEEEEESSCTTTTEES----CHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHhcCCCEEEEeccccccCHHHHccC--CEEEEeCCcCCCCCCc----CHHHHHHHcCCCcEEEE
Confidence            445555  9999999999999999999984  5999   999999997    99999999998544444

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.44  E-value=2.7e-07  Score=68.52  Aligned_cols=64  Identities=13%  Similarity=0.092  Sum_probs=49.9

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      .++.|++.++||||++++|++.|+++|+||.++.+...  .+.+.+.+.++.++    .+.+++.++++.
T Consensus         4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~--~~~~~~~i~v~~~~----~~~l~~l~~~L~   67 (88)
T 2ko1_A            4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAK--DGIFTCNLMIFVKN----TDKLTTLMDKLR   67 (88)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEEC--SSEEEEEEEEEESS----HHHHHHHHHHHT
T ss_pred             EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEc--CCEEEEEEEEEECC----HHHHHHHHHHHh
Confidence            56889999999999999999999999999999998653  23666777777764    445555555544

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.11  E-value=2.4e-05  Score=74.02  Aligned_cols=93  Identities=11%  Similarity=-0.034  Sum_probs=72.9

Q ss_pred             CCcccEEEEEEcCC-CcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhccc
Q 023530           38 PTLTHGIHVFHCPD-EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (281)
Q Consensus        38 ~~~~~~iltV~G~D-rpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~  116 (281)
                      +...++++++.|.| ++|++++|+.+++++|+||.++.....  ...|.+.+.+.+|+  .+.++++++|.++++++++|
T Consensus        97 ~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~--~~~~~~~~~v~~~~--~~~~~l~~~l~~l~~~~~vD  172 (415)
T 3p96_A           97 REPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSD--YPVIGLELRVSVPP--GADEALRTALNRVSSEEHVD  172 (415)
T ss_dssp             CCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEES--SSSEEEEEEEECCT--TCHHHHHHHHHHHHHHHTCE
T ss_pred             CCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccC--CCceEEEEEeeCCC--CCHHHHHHHHHHHhhhcCcC
Confidence            34568999999999 999999999999999999999988653  34555556666664  57899999999999999998


Q ss_pred             ceeeeecCCCCCeeEEEE
Q 023530          117 RSVVRVPDIDPKYKVAVL  134 (281)
Q Consensus       117 ~~~~~~~~~~~~~rIavl  134 (281)
                      ....+-....+++|.++|
T Consensus       173 ~~v~~~~~~~~~~k~viF  190 (415)
T 3p96_A          173 VAVEDYTLERRAKRLIVF  190 (415)
T ss_dssp             EEEEECSTTTTCCCEEEE
T ss_pred             cccccccccccCCcEEEE
Confidence            653322223567787776

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.68  E-value=6.7e-05  Score=63.71  Aligned_cols=68  Identities=19%  Similarity=0.197  Sum_probs=50.6

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      +.+.|++...|+||++++|++.|+++|+||..+........|...|.+.++-+  ....+++.+.+.++-
T Consensus         2 ~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d--~~~leqI~kqL~Kl~   69 (164)
T 2f1f_A            2 ARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGD--EKVLEQIEKQLHKLV   69 (164)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESC--HHHHHHHHHHHHHST
T ss_pred             eEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEecc--HHHHHHHHHHHcCCC
Confidence            47899999999999999999999999999999998654344666666666621  223455555555543

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=97.40  E-value=0.00025  Score=60.29  Aligned_cols=68  Identities=19%  Similarity=0.114  Sum_probs=51.1

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      +++.|++...|+||.+++|++.|+++|+||..+........|...|.+.++-+  ....+++.+.+.++-
T Consensus         3 m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d--~~~leql~kQL~Kl~   70 (165)
T 2pc6_A            3 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP--DEIVEQITKQLNKLI   70 (165)
T ss_dssp             EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC--HHHHHHHHHHHHHST
T ss_pred             eEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc--HHHHHHHHHHhcCCC
Confidence            57899999999999999999999999999999988654445665666666532  223556666666554

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=97.40  E-value=0.00044  Score=60.16  Aligned_cols=70  Identities=20%  Similarity=0.186  Sum_probs=53.9

Q ss_pred             cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (281)
Q Consensus        40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~  111 (281)
                      .+++.|++.-.|+||.+++|++.|+++|+||..+...-....|.-.|.+.++-+  ....++|.+++.++-+
T Consensus        27 ~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--e~~ieqL~kQL~KLid   96 (193)
T 2fgc_A           27 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--DKTIEQIEKQAYKLVE   96 (193)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--TTHHHHHHHHHTTSTT
T ss_pred             ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--HHHHHHHHHHhcCcCc
Confidence            468999999999999999999999999999999988643344655555566543  2356777777776543

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=97.39  E-value=0.0002  Score=63.39  Aligned_cols=90  Identities=17%  Similarity=0.201  Sum_probs=58.6

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC--C-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE--K-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~--~-~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~  117 (281)
                      +++.|.+.+.||||++++|++.|+++++||..++++...  . .+...|.  +++.+ . +.+++-+.++.+-.=+.+. 
T Consensus         3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d-~-~Le~LL~kLrkI~gV~~V~-   77 (223)
T 1y7p_A            3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEG-G-DFEKILERVKTFDYIIEIE-   77 (223)
T ss_dssp             -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECS-S-CHHHHHHHHHTCTTEEEEE-
T ss_pred             ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECC-C-CHHHHHHHHhCCCCeeEEE-
Confidence            578899999999999999999999999999999998742  1 3566666  66554 3 6777777776654332221 


Q ss_pred             eeeeecCCC--CCeeEEEEeeCC
Q 023530          118 SVVRVPDID--PKYKVAVLASKQ  138 (281)
Q Consensus       118 ~~~~~~~~~--~~~rIavl~Sg~  138 (281)
                         ++....  --+||.|++-|.
T Consensus        78 ---Rv~~~~~i~gkrvii~ggga   97 (223)
T 1y7p_A           78 ---EEESFERVFGKRVIILGGGA   97 (223)
T ss_dssp             ---EECCHHHHTCEEEEEEECHH
T ss_pred             ---EEcchhhhcCcEEEEECCcH
Confidence               111111  137888887664

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=97.33  E-value=0.01  Score=47.88  Aligned_cols=62  Identities=10%  Similarity=0.066  Sum_probs=45.7

Q ss_pred             CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (281)
Q Consensus        39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~  108 (281)
                      ..+.+.++|..+|+||++++|++.|+++|+||..+.+......|  +.++.+  .    +.+..++.|++
T Consensus         3 ~m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~--~~~~~~--~----d~~~a~~~L~~   64 (144)
T 2f06_A            3 AMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFG--ILRGIV--S----DPDKAYKALKD   64 (144)
T ss_dssp             SSEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCE--EEEEEE--S----CHHHHHHHHHH
T ss_pred             ccEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCC--EEEEEe--C----CHHHHHHHHHH
Confidence            34678999999999999999999999999999999886422223  234442  2    45666666664

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.20  E-value=0.001  Score=55.74  Aligned_cols=93  Identities=12%  Similarity=-0.032  Sum_probs=63.7

Q ss_pred             CCCCcccEEEEEEc-CCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhc
Q 023530           36 VSPTLTHGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (281)
Q Consensus        36 ~~~~~~~~iltV~G-~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~  114 (281)
                      -+.......|++.| +|+||+.++|.+.|+++|+||..+.|...+ .|.+.+++.++-    .+.+...+.|+++.++++
T Consensus        19 Ia~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~-~g~~~isf~v~~----~~~~~a~~~l~~~~~~l~   93 (167)
T 2re1_A           19 IAFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGS-EGTTDFSFTVPR----GDYKQTLEILSERQDSIG   93 (167)
T ss_dssp             EEEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECG----GGHHHHHHHHHHSSTTTT
T ss_pred             EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCC-CCeeEEEEEEec----hHHHHHHHHHHHHHHHcC
Confidence            33334557889987 999999999999999999999999986433 255555555542    245667788888877777


Q ss_pred             ccceeeeecCCCCCeeEEEEeeC
Q 023530          115 AMRSVVRVPDIDPKYKVAVLASK  137 (281)
Q Consensus       115 l~~~~~~~~~~~~~~rIavl~Sg  137 (281)
                      ...  +..  .....+|.|.+.|
T Consensus        94 ~~~--i~~--~~~~a~vsvvG~~  112 (167)
T 2re1_A           94 AAS--IDG--DDTVCKVSAVGLG  112 (167)
T ss_dssp             CSE--EEE--ESSEEEEEEECSS
T ss_pred             Cce--EEe--cCCEEEEEEECCC
Confidence            532  222  2345678888877

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=96.91  E-value=0.011  Score=49.28  Aligned_cols=89  Identities=18%  Similarity=0.054  Sum_probs=64.3

Q ss_pred             cccEEEEEEc-CCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530           40 LTHGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (281)
Q Consensus        40 ~~~~iltV~G-~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~  117 (281)
                      .....|++.| +|+||+.+++.+.|+++|+||.-+.|...+ ..|...+.+.+.-    .+.+...+.|+++..+++.  
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~----~d~~~a~~~L~~~~~~~~~--   87 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKK----DFAQEALEALEPVLAEIGG--   87 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEG----GGHHHHHHHHHHHHHHHCC--
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEeh----HHHHHHHHHHHHHHHHhCC--
Confidence            3557788888 899999999999999999999999985421 2345454555542    2456677888888888874  


Q ss_pred             eeeeecCCCCCeeEEEEeeC
Q 023530          118 SVVRVPDIDPKYKVAVLASK  137 (281)
Q Consensus       118 ~~~~~~~~~~~~rIavl~Sg  137 (281)
                       .+.+  ....-+|.+.+.|
T Consensus        88 -~v~~--~~~~a~vsvVG~g  104 (167)
T 2dt9_A           88 -EAIL--RPDIAKVSIVGVG  104 (167)
T ss_dssp             -EEEE--ECSEEEEEEEESS
T ss_pred             -cEEE--eCCEEEEEEECCC
Confidence             2333  3446689999987

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.78  E-value=0.0021  Score=52.66  Aligned_cols=34  Identities=18%  Similarity=0.339  Sum_probs=31.7

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFV   77 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~   77 (281)
                      .|.|.|.||+|++++|++.|+++++||..++...
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~   35 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP   35 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEET
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEec
Confidence            4789999999999999999999999999999854

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.25  E-value=0.013  Score=57.66  Aligned_cols=65  Identities=15%  Similarity=0.076  Sum_probs=49.8

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL  109 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~l  109 (281)
                      ..+.|.+.-+|+||+|+.|++.|.++|+||.+++-......|.=.|.++++-+.    .+++.+++.++
T Consensus       453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~~----~~~~l~~l~~~  517 (529)
T 1ygy_A          453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDV----PDDVRTAIAAA  517 (529)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCC----CHHHHHHHHHH
T ss_pred             CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCCC----CHHHHHHHhcC
Confidence            457888889999999999999999999999999876544456667778777443    34455555554

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=96.15  E-value=0.021  Score=54.56  Aligned_cols=76  Identities=16%  Similarity=0.258  Sum_probs=52.0

Q ss_pred             hhhhheeecc--cccccCCCCccCCCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEE
Q 023530           11 LQQVVKFTNR--SFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRS   88 (281)
Q Consensus        11 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrl   88 (281)
                      .+++..|.+.  .-..+.||...+..     .....|.+.-.|+||+++.|++.|+++|+||..+....  ..+.=.|.+
T Consensus       303 ~~nl~~~l~g~~~~~~vn~p~~~~~~-----~~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r--~g~~A~~vi  375 (404)
T 1sc6_A          303 AGKLIKYSDNGSTLSAVNFPEVSLPL-----HGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT--SAQMGYVVI  375 (404)
T ss_dssp             HHHHHHHHHHCCCTTBSSSCCCCCCC-----CSSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE--CSSEEEEEE
T ss_pred             HHHHHHHHcCCCCcceecccccccCc-----CCcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC--CCCEEEEEE
Confidence            3455555431  23345666544321     14567888899999999999999999999999988765  245556677


Q ss_pred             EEEeC
Q 023530           89 EFIFD   93 (281)
Q Consensus        89 ev~~p   93 (281)
                      +++-+
T Consensus       376 dvD~~  380 (404)
T 1sc6_A          376 DIEAD  380 (404)
T ss_dssp             EEECC
T ss_pred             EcCCC
Confidence            77743

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=96.09  E-value=0.009  Score=51.99  Aligned_cols=98  Identities=16%  Similarity=0.030  Sum_probs=68.6

Q ss_pred             CCCCCCcccEEEEEEc-CCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhh
Q 023530           34 SSVSPTLTHGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM  112 (281)
Q Consensus        34 ~~~~~~~~~~iltV~G-~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~  112 (281)
                      +.-+-......||+.| ||+||+.++|=+.|+++|+||.-+.|..... ......+.+.++.  .+.+...+.++++..+
T Consensus        27 tGIa~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~-~~~~~~~sftv~~--~d~~~~~~~l~~~~~~  103 (200)
T 4go7_X           27 TGVAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKV-EDGKTDITFTCSR--DVGPAAVEKLDSLRNE  103 (200)
T ss_dssp             EEEEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC---CCEEEEEEEEEG--GGHHHHHHHHHTTHHH
T ss_pred             EEEEccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccc-cccceEEEEecch--hhHHHHHHHHHHHHhh
Confidence            3333444556788876 8999999999999999999999998865321 2234456666664  3567777888888888


Q ss_pred             hcccceeeeecCCCCCeeEEEEeeCC
Q 023530          113 FNAMRSVVRVPDIDPKYKVAVLASKQ  138 (281)
Q Consensus       113 l~l~~~~~~~~~~~~~~rIavl~Sg~  138 (281)
                      ++...  +..  ...--||.+.+.|-
T Consensus       104 ~~~~~--v~~--~~~iakVSvVG~GM  125 (200)
T 4go7_X          104 IGFSQ--LLY--DDHIGKVSLIGAGM  125 (200)
T ss_dssp             HCCSE--EEE--ECCEEEEEEEEESC
T ss_pred             hceee--EEE--ecCeeeeeeecccc
Confidence            77542  222  34456899988886

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=95.99  E-value=0.022  Score=45.87  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=29.2

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeee
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVF   76 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~   76 (281)
                      ++.+.-+|+||.++++++.|+++|+||..+-++
T Consensus        74 vv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~  106 (144)
T 2f06_A           74 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSF  106 (144)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEE
Confidence            566677899999999999999999999887765

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=95.16  E-value=0.15  Score=43.24  Aligned_cols=90  Identities=17%  Similarity=0.030  Sum_probs=61.7

Q ss_pred             ccEEEEEEc-CCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccce
Q 023530           41 THGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS  118 (281)
Q Consensus        41 ~~~iltV~G-~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~  118 (281)
                      ....|++.+ +|+||+.++|-+.|+++|+||.-+.|.... ..|.-.  +.+.++.  .+.+...+.|+++.++++..  
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~--isftv~~--~~~~~a~~~L~~~~~el~~~--   88 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTD--ITFTCSR--DVGPAAVEKLDSLRNEIGFS--   88 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEE--EEEEEET--TTHHHHHHHHHHTHHHHCCS--
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccE--EEEEEeh--hHHHHHHHHHHHHHHhcCcc--
Confidence            344566544 699999999999999999999999886432 145433  3444443  25667788888888777654  


Q ss_pred             eeeecCCCCCeeEEEEeeCC
Q 023530          119 VVRVPDIDPKYKVAVLASKQ  138 (281)
Q Consensus       119 ~~~~~~~~~~~rIavl~Sg~  138 (281)
                      .+.+  ...--+|.+.+.|-
T Consensus        89 ~v~~--~~~va~VsvVG~gm  106 (181)
T 3s1t_A           89 QLLY--DDHIGKVSLIGAGM  106 (181)
T ss_dssp             EEEE--ESCEEEEEEEEECC
T ss_pred             eEEE--eCCEEEEEEEeccc
Confidence            2332  23456888888864

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=94.86  E-value=0.21  Score=41.93  Aligned_cols=107  Identities=17%  Similarity=0.042  Sum_probs=65.8

Q ss_pred             ccEEEEEE-cCCCcchHHHHHHHHHhCCCeEeEeeeecc-CCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccce
Q 023530           41 THGIHVFH-CPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS  118 (281)
Q Consensus        41 ~~~iltV~-G~DrpGIVa~VS~~La~~giNI~dl~q~~~-~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~  118 (281)
                      ....|+|. .+|+||+.++|.+.|+++|+||.-+.|.+. +..|.-  .+.+.++.  .+.+...+.|+++.++++..  
T Consensus        14 ~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~--~isf~v~~--~d~~~a~~~l~~~~~~~~~~--   87 (178)
T 2dtj_A           14 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTT--DITFTCPR--SDGRRAMEILKKLQVQGNWT--   87 (178)
T ss_dssp             SEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEE--EEEEEEEH--HHHHHHHHHHHTTTTTTTCS--
T ss_pred             CEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCce--EEEEEEcc--ccHHHHHHHHHHHHHhcCCC--
Confidence            44566774 589999999999999999999999988642 122221  12233332  13455667777776677643  


Q ss_pred             eeeecCCCCCeeEEEEeeCCh---hHHHHHHHhhhcCCCC
Q 023530          119 VVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEGKLP  155 (281)
Q Consensus       119 ~~~~~~~~~~~rIavl~Sg~G---snL~aLl~~~~~g~l~  155 (281)
                      .+.+  ....-+|.+.++|-.   .-+..++.+..+..++
T Consensus        88 ~v~~--~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~In  125 (178)
T 2dtj_A           88 NVLY--DDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVN  125 (178)
T ss_dssp             EEEE--ESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred             eEEE--eCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCC
Confidence            2222  344668888888652   2233455554444433

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=94.60  E-value=0.022  Score=53.65  Aligned_cols=55  Identities=16%  Similarity=0.324  Sum_probs=35.5

Q ss_pred             CCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEE
Q 023530          124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH  185 (281)
Q Consensus       124 ~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~  185 (281)
                      .+++|+||+|.++|-|..   -+.++.+-.-.+++++|++..    ...+.++|+++|||++
T Consensus         3 ~~~~~~rv~VvG~G~g~~---h~~a~~~~~~~~elvav~~~~----~~~a~~~a~~~gv~~~   57 (372)
T 4gmf_A            3 SASPKQRVLIVGAKFGEM---YLNAFMQPPEGLELVGLLAQG----SARSRELAHAFGIPLY   57 (372)
T ss_dssp             ----CEEEEEECSTTTHH---HHHTTSSCCTTEEEEEEECCS----SHHHHHHHHHTTCCEE
T ss_pred             CCCCCCEEEEEehHHHHH---HHHHHHhCCCCeEEEEEECCC----HHHHHHHHHHhCCCEE
Confidence            356789999999997743   233332211137899988754    3457889999999964

>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A

Probab=94.07  E-value=0.14  Score=45.53  Aligned_cols=105  Identities=12%  Similarity=0.061  Sum_probs=60.8

Q ss_pred             CeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCC---------ChhHHHHHHhCCCCEEEeCCCCC-C-hH
Q 023530          128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGP---------NSHVIRFLERHGIPYHYLCAKEN-E-RE  195 (281)
Q Consensus       128 ~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~---------~a~~~~~A~~~gIP~~~i~~k~~-~-~e  195 (281)
                      .||++++.||+ +|++. +....+.|   .+|.++++..+...         -..+...|+..|||+++++.+.. . ..
T Consensus         4 ~MKvvvl~SGGkDSs~a-l~~l~~~G---~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~   79 (237)
T 3rjz_A            4 LADVAVLYSGGKDSNYA-LYWAIKNR---FSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQGEKEKEV   79 (237)
T ss_dssp             CSEEEEECCSSHHHHHH-HHHHHHTT---CEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC------CH
T ss_pred             CCEEEEEecCcHHHHHH-HHHHHHcC---CeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCCCchHHH
Confidence            36999999998 46554 44444556   58887765443211         13467789999999999883221 1 22


Q ss_pred             HHHHHHHh--CCCEEEEecccccCChhHHhhhcCCc--ee--ccCCCCCC
Q 023530          196 EELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKL--LE--SLSSKGSL  239 (281)
Q Consensus       196 ~~l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~ri--IN--SLLP~f~G  239 (281)
                      +.+.+.|+  +++.+|.   .-|+++.--.+-++.|  +|  ++.|.|+=
T Consensus        80 e~l~~~l~~~~i~~vv~---Gdi~s~yqr~r~e~vc~~~gl~~~~PLW~~  126 (237)
T 3rjz_A           80 EDLKRVLSGLKIQGIVA---GALASKYQRKRIEKVAKELGLEVYTPAWGR  126 (237)
T ss_dssp             HHHHHHHTTSCCSEEEC---C---CCSHHHHHHHHHHHTTCEEECSSSSC
T ss_pred             HHHHHHHHhcCCcEEEE---CCcchHHHHHHHHHHHHHcCCEEEccccCC
Confidence            56777777  6777763   3344444333322222  23  78888754

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=93.43  E-value=0.19  Score=48.58  Aligned_cols=71  Identities=13%  Similarity=0.059  Sum_probs=50.1

Q ss_pred             CCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530           37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (281)
Q Consensus        37 ~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~  111 (281)
                      .....+|-+.+...|+||++++|++.|+++|++|..+-|.-.. ..+.  ..+.+-. . .....+++++++++.+
T Consensus       354 ~~~~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~--~~~v~~t-h-~~~e~~~~~~~~~~~~  425 (444)
T 3mtj_A          354 EAVRTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQ--VDIILLT-H-VTLEKNVNAAIAKIEA  425 (444)
T ss_dssp             GGCEEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------C--EEEEEEE-C-SEEHHHHHHHHHHHTT
T ss_pred             HHcceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCC--ceEEEEe-c-cCCHHHHHHHHHHHhc
Confidence            3445789999999999999999999999999999999986321 1111  2333322 2 4567888888888764

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=93.32  E-value=0.23  Score=41.16  Aligned_cols=62  Identities=23%  Similarity=0.131  Sum_probs=45.3

Q ss_pred             ccEEEEEEcCC---CcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcc
Q 023530           41 THGIHVFHCPD---EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (281)
Q Consensus        41 ~~~iltV~G~D---rpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l  115 (281)
                      .-..++|+|.+   +||+.+++.+.|+++|+||..+++     +.. .+.+.++       .++..++++.+.++|.+
T Consensus       102 ~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~ist-----se~-~is~vv~-------~~d~~~av~~Lh~~f~l  166 (167)
T 2re1_A          102 TVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIST-----SEI-KVSVLID-------EKYMELATRVLHKAFNL  166 (167)
T ss_dssp             SEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEE-----CSS-EEEEEEE-------GGGHHHHHHHHHHHTTC
T ss_pred             CEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEc-----ccC-EEEEEEe-------HHHHHHHHHHHHHHhcC
Confidence            45789999997   999999999999999999998763     111 1222232       24466777777777754

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=92.61  E-value=0.29  Score=44.46  Aligned_cols=69  Identities=9%  Similarity=0.209  Sum_probs=44.6

Q ss_pred             CCCCeeEEEEeeCC-hh--HHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHH
Q 023530          125 IDPKYKVAVLASKQ-EH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL  201 (281)
Q Consensus       125 ~~~~~rIavl~Sg~-Gs--nL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~  201 (281)
                      ...|+||+|.+.|. |.  -+.++ ..  .+  .++|++|.+-.    ...+.+.|+++|+|..+-     +    +.++
T Consensus        20 ~~~mirigiIG~G~ig~~~~~~~~-~~--~~--~~~lvav~d~~----~~~a~~~a~~~g~~~~y~-----d----~~el   81 (350)
T 4had_A           20 FQSMLRFGIISTAKIGRDNVVPAI-QD--AE--NCVVTAIASRD----LTRAREMADRFSVPHAFG-----S----YEEM   81 (350)
T ss_dssp             --CCEEEEEESCCHHHHHTHHHHH-HH--CS--SEEEEEEECSS----HHHHHHHHHHHTCSEEES-----S----HHHH
T ss_pred             ccCccEEEEEcChHHHHHHHHHHH-Hh--CC--CeEEEEEECCC----HHHHHHHHHHcCCCeeeC-----C----HHHH
Confidence            45689999999997 32  23333 32  12  37888876643    345788999999996552     2    2255


Q ss_pred             Hh--CCCEEEEe
Q 023530          202 VQ--NTDFLVLA  211 (281)
Q Consensus       202 L~--~~DlIVLA  211 (281)
                      |+  ++|+|++|
T Consensus        82 l~~~~iDaV~I~   93 (350)
T 4had_A           82 LASDVIDAVYIP   93 (350)
T ss_dssp             HHCSSCSEEEEC
T ss_pred             hcCCCCCEEEEe
Confidence            55  68888886

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=91.76  E-value=0.95  Score=42.98  Aligned_cols=88  Identities=18%  Similarity=-0.061  Sum_probs=60.2

Q ss_pred             EEEEEEc-CCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccceee
Q 023530           43 GIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV  120 (281)
Q Consensus        43 ~iltV~G-~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~~~  120 (281)
                      ..|++.+ +|+||+.++|-+.|+++|+||.-+.|.+.. ..|...+.+.++  .  .+.+...+.|+++..+++.+  .+
T Consensus       265 ~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~--~--~~~~~a~~~l~~~~~~~~~~--~v  338 (421)
T 3ab4_A          265 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCP--R--SDGRRAMEILKKLQVQGNWT--NV  338 (421)
T ss_dssp             EEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEE--T--TTHHHHHHHHHHHHTTTTCS--EE
T ss_pred             EEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEe--c--hhHHHHHHHHHHHHHHcCCc--eE
Confidence            4567774 899999999999999999999999884321 134444444444  3  25666778888888888753  23


Q ss_pred             eecCCCCCeeEEEEeeCC
Q 023530          121 RVPDIDPKYKVAVLASKQ  138 (281)
Q Consensus       121 ~~~~~~~~~rIavl~Sg~  138 (281)
                      .+  ....-+|.|.+.|-
T Consensus       339 ~~--~~~~a~vsvVG~gm  354 (421)
T 3ab4_A          339 LY--DDQVGKVSLVGAGM  354 (421)
T ss_dssp             EE--ECCEEEEEEECGGG
T ss_pred             EE--eCCeEEEEEEccCc
Confidence            33  24456788888753

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=91.63  E-value=0.25  Score=41.47  Aligned_cols=63  Identities=14%  Similarity=0.171  Sum_probs=47.4

Q ss_pred             ccEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhccc
Q 023530           41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (281)
Q Consensus        41 ~~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~  116 (281)
                      .-..|+++|.   |+||+.+++.+.|+++|+||.-+++.   ....     .+-++     .++.+++++.+-+.|.++
T Consensus        94 ~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istS---e~~I-----s~vV~-----~~d~~~Av~~Lh~~F~l~  159 (178)
T 2dtj_A           94 QVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTS---EIRI-----SVLIR-----EDDLDAAARALHEQFQLG  159 (178)
T ss_dssp             CEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE---TTEE-----EEEEE-----GGGHHHHHHHHHHHHTCC
T ss_pred             CeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcC---CCeE-----EEEEe-----HHHHHHHHHHHHHHHccC
Confidence            5578999998   89999999999999999999887631   1222     22222     456788888888888764

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=91.52  E-value=0.47  Score=45.49  Aligned_cols=64  Identities=16%  Similarity=0.242  Sum_probs=46.0

Q ss_pred             hhhhheee-c-ccccccCCCCccCCCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530           11 LQQVVKFT-N-RSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP   78 (281)
Q Consensus        11 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~   78 (281)
                      .+++..|. + ..-.+..||-.-.    +.......|++.=.+.||+++.|++.|+++|+||.++...+.
T Consensus       314 ~~nl~~~l~~g~~~~~Vn~p~~~~----~~~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~  379 (416)
T 3k5p_A          314 TRKLVEYSDVGSTVGAVNFPQVQL----PPRPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTD  379 (416)
T ss_dssp             HHHHHHHHHHCCCTTBSSSCCCCC----CCCSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred             HHHHHHHHhhCCCCceeeCCCcCC----CCCCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCC
Confidence            34555554 2 2334566765332    233356899999999999999999999999999999877653

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=91.23  E-value=0.73  Score=37.95  Aligned_cols=63  Identities=16%  Similarity=0.084  Sum_probs=44.2

Q ss_pred             ccEEEEEEcCC---CcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhccc
Q 023530           41 THGIHVFHCPD---EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (281)
Q Consensus        41 ~~~iltV~G~D---rpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~  116 (281)
                      .-..++++|.+   +||+.+++.+.|++.|+||.-.++     +.. .+.+.++       .++..++++.+-+.+.++
T Consensus        94 ~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~-----Se~-~is~vv~-------~~d~~~Av~~Lh~~f~~~  159 (167)
T 2dt9_A           94 DIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIAT-----SEV-RISVIIP-------AEYAEAALRAVHQAFELD  159 (167)
T ss_dssp             SEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEE-----CSS-EEEEEEE-------GGGHHHHHHHHHHHTC--
T ss_pred             CEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEc-----cCC-EEEEEEe-------HHHHHHHHHHHHHHHcCC
Confidence            55789999987   999999999999999999966653     222 2233333       345677777777776554

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=90.81  E-value=0.57  Score=42.60  Aligned_cols=70  Identities=7%  Similarity=0.162  Sum_probs=42.5

Q ss_pred             CCeeEEEEeeCC-hhH-HHHH---HHhhhcCCC-CeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHH
Q 023530          127 PKYKVAVLASKQ-EHC-LVDF---LYGWQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLE  200 (281)
Q Consensus       127 ~~~rIavl~Sg~-Gsn-L~aL---l~~~~~g~l-~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~  200 (281)
                      +|.||||.+.|. |.. +.++   -...  ... .++|++|..-.+    ..+.+.|+++|+|..+-     +    +.+
T Consensus        24 kkirvgiIG~G~ig~~H~~a~~~~~~~~--~~~~~~~lvav~d~~~----~~a~~~a~~~g~~~~y~-----d----~~e   88 (393)
T 4fb5_A           24 KPLGIGLIGTGYMGKCHALAWNAVKTVF--GDVERPRLVHLAEANA----GLAEARAGEFGFEKATA-----D----WRA   88 (393)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHTTHHHHH--CSSCCCEEEEEECC------TTHHHHHHHHTCSEEES-----C----HHH
T ss_pred             CCccEEEEcCCHHHHHHHHHHHhhhhhh--ccCCCcEEEEEECCCH----HHHHHHHHHhCCCeecC-----C----HHH
Confidence            357999999987 321 2222   1111  111 378998876543    34678999999986552     2    225


Q ss_pred             HHh--CCCEEEEe
Q 023530          201 LVQ--NTDFLVLA  211 (281)
Q Consensus       201 ~L~--~~DlIVLA  211 (281)
                      +|+  ++|+|+.|
T Consensus        89 ll~~~~iDaV~Ia  101 (393)
T 4fb5_A           89 LIADPEVDVVSVT  101 (393)
T ss_dssp             HHHCTTCCEEEEC
T ss_pred             HhcCCCCcEEEEC
Confidence            555  78888886

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=90.57  E-value=0.32  Score=48.67  Aligned_cols=93  Identities=15%  Similarity=0.082  Sum_probs=63.3

Q ss_pred             cccEEEEEEc-CCCcchHHHHHHHHHhCCCeEeEeeeeccCC--CCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhccc
Q 023530           40 LTHGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEK--KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (281)
Q Consensus        40 ~~~~iltV~G-~DrpGIVa~VS~~La~~giNI~dl~q~~~~~--~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~  116 (281)
                      .....|++.+ +|+||+.++|=+.|+++|+|+.=+.|.....  +|.+...+.|.++.  .+.+...+.|+++.++++..
T Consensus       442 ~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~--~d~~~a~~~l~~~~~~~~~~  519 (600)
T 3l76_A          442 QDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE--GDSSQAEAILQPLIKDWLDA  519 (600)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH--HHHHHHHHHHHHHTTTSTTC
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH--HHHHHHHHHHHHHHHhcCCc
Confidence            3456677755 8999999999999999999998888865321  35443455566653  24566677777777777643


Q ss_pred             ceeeeecCCCCCeeEEEEeeCC
Q 023530          117 RSVVRVPDIDPKYKVAVLASKQ  138 (281)
Q Consensus       117 ~~~~~~~~~~~~~rIavl~Sg~  138 (281)
                      .  +.+  ...--||.+.+.|-
T Consensus       520 ~--v~~--~~~~akVSiVG~GM  537 (600)
T 3l76_A          520 A--IVV--NKAIAKVSIVGSGM  537 (600)
T ss_dssp             E--EEE--ECCEEEEEEECGGG
T ss_pred             e--EEE--eCCeEEEEEECccc
Confidence            2  222  24456888887664

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=90.42  E-value=0.99  Score=40.73  Aligned_cols=65  Identities=12%  Similarity=0.098  Sum_probs=44.1

Q ss_pred             ccEEEEEE-cCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCC--eEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530           41 THGIHVFH-CPDEVGIVAKLSECIASRGGNILAADVFVPE-KKN--VFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (281)
Q Consensus        41 ~~~iltV~-G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g--~F~mrlev~~p~~~~~~~~L~~~L~~la~  111 (281)
                      +.+++++. -+|+||-.+++-+.|+.+|+|+..+++.=.. ..+  .||+.++ ..     +-+.++++|+++..
T Consensus       187 tsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~~-----~d~~v~~aL~~L~~  255 (267)
T 2qmw_A          187 TSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-SA-----ITTDIKKVIAILET  255 (267)
T ss_dssp             SEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-CC-----SCHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-cC-----CcHHHHHHHHHHHH
Confidence            34444432 2799999999999999999999999986422 122  5554443 21     23667888877754

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=89.85  E-value=0.82  Score=43.33  Aligned_cols=76  Identities=11%  Similarity=0.152  Sum_probs=52.0

Q ss_pred             eeEEEEee-CC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCC-CCCC--------hHHH
Q 023530          129 YKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KENE--------REEE  197 (281)
Q Consensus       129 ~rIavl~S-g~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~-k~~~--------~e~~  197 (281)
                      +||+||+| |+ |++--+++.+.  .  .++++++.+++   .-....+.|++++..++.+.. ....        -++.
T Consensus         4 k~i~ILGsTGSIG~~tldVi~~~--~--~~~vvaL~a~~---n~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~   76 (376)
T 3a06_A            4 RTLVILGATGSIGTQTLDVLKKV--K--GIRLIGISFHS---NLELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHS   76 (376)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHS--C--SEEEEEEEESS---CHHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTH
T ss_pred             ceEEEECCCCHHHHHHHHHHHhC--C--CeEEEEEEccC---CHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHH
Confidence            78999996 66 66655666653  2  37999988765   234577889999988887652 1111        1245


Q ss_pred             HHHHHh--CCCEEEEe
Q 023530          198 LLELVQ--NTDFLVLA  211 (281)
Q Consensus       198 l~~~L~--~~DlIVLA  211 (281)
                      +.+++.  ++|+|+.|
T Consensus        77 l~el~~~~~~D~Vv~A   92 (376)
T 3a06_A           77 IEEMLEALKPDITMVA   92 (376)
T ss_dssp             HHHHHHHHCCSEEEEC
T ss_pred             HHHHhcCCCCCEEEEE
Confidence            667776  79999987

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=89.32  E-value=0.64  Score=40.20  Aligned_cols=63  Identities=19%  Similarity=0.273  Sum_probs=48.8

Q ss_pred             ccEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhccc
Q 023530           41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (281)
Q Consensus        41 ~~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~  116 (281)
                      .-..++++|.   .+||+-+++-+.|++.|+||.-+++     +..   .+.+-++     .++..++++.+-+.|+|+
T Consensus       114 ~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIst-----SEi---~IS~vV~-----~~d~~~Av~aLH~~F~L~  179 (200)
T 4go7_X          114 HIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIST-----SEI---RISVLCR-----DTELDKAVVALHEAFGLG  179 (200)
T ss_dssp             CEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEE-----CSS---EEEEEEE-----GGGHHHHHHHHHHHHTC-
T ss_pred             CeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEc-----cCC---EEEEEEe-----HHHHHHHHHHHHHHhCCC
Confidence            4467888886   7899999999999999999999874     222   3334443     366889999999999986

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=89.15  E-value=1.5  Score=40.51  Aligned_cols=67  Identities=16%  Similarity=0.157  Sum_probs=46.1

Q ss_pred             cccEEEEEEcC-CCcchHHHHHHHHHhCCCeEeEeeeeccC-CCC--eEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530           40 LTHGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVPE-KKN--VFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (281)
Q Consensus        40 ~~~~iltV~G~-DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g--~F~mrlev~~p~~~~~~~~L~~~L~~la~  111 (281)
                      ..+..|.+.-+ |+||-++++-+.|+.+|+|+..+++.-.. ..+  .||  ++++  . ..+-+.++++|+++..
T Consensus       199 ~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ff--iD~e--g-~~~d~~v~~aL~~L~~  269 (313)
T 3mwb_A          199 ADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFS--IDAD--G-HATDSRVADALAGLHR  269 (313)
T ss_dssp             SEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEE--EEEE--S-CTTSHHHHHHHHHHHH
T ss_pred             CCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEE--EEEe--C-CCCcHHHHHHHHHHHH
Confidence            34555556665 99999999999999999999999985321 122  455  3443  2 2344667888877754

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=88.92  E-value=9.3  Score=38.00  Aligned_cols=129  Identities=14%  Similarity=0.119  Sum_probs=76.6

Q ss_pred             EEEEEEc-CCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhh-------c
Q 023530           43 GIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF-------N  114 (281)
Q Consensus        43 ~iltV~G-~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l-------~  114 (281)
                      ..|++.+ +|++|+.++|-+.|+++|+|+.-+.|... ..|.-  .+.|.++.  .+.+...+.++++..++       +
T Consensus       271 ~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~-~~~~~--~Isftv~~--~~~~~a~~~l~~~~~el~~~~~~~~  345 (600)
T 3l76_A          271 AKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIH-DGNSN--DIAFTVVK--DLLNTAEAVTSAIAPALRSYPEADQ  345 (600)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCC-BTTEE--EEEEEECG--GGHHHHHHHHHHHGGGGSSSTTCSS
T ss_pred             EEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeecc-CCCCc--eEEEEEeH--HHHHHHHHHHHHHHHHhhccccccC
Confidence            4566655 79999999999999999999988887542 23443  34555554  25667777788887777       3


Q ss_pred             ccceeeeecCCCCCeeEEEEeeCCh---hHHHHHHHhhhcCCC--------CeeEEEEEeCCCCCCChhHHHHHHhCCC
Q 023530          115 AMRSVVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEGKL--------PVEITCVISNHDRGPNSHVIRFLERHGI  182 (281)
Q Consensus       115 l~~~~~~~~~~~~~~rIavl~Sg~G---snL~aLl~~~~~g~l--------~~eI~~Visn~pd~~~a~~~~~A~~~gI  182 (281)
                      ..  .+.+  ....-+|.+.+.|--   ..+..+.....+..+        ...|.++|... | .+..+..+-+++..
T Consensus       346 ~~--~v~~--~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~istSe~~Is~vI~~~-d-~~~Av~aLh~~f~~  418 (600)
T 3l76_A          346 EA--EIIV--EKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMISTSEVKVSCVIDQR-D-ADRAIAALSNAFGV  418 (600)
T ss_dssp             SS--EEEE--ECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGG-G-HHHHHHHHHHHTTC
T ss_pred             cc--eeEe--cCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEecCCCEEEEEEcHH-H-HHHHHHHHHHhhcc
Confidence            32  1222  244567888777541   222333333332222        24577777753 2 12234445556654

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=88.83  E-value=1.2  Score=40.43  Aligned_cols=64  Identities=20%  Similarity=0.328  Sum_probs=44.1

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCC--eEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKN--VFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g--~F~mrlev~~p~~~~~~~~L~~~L~~la~  111 (281)
                      +.+++++  +|+||-.+++-+.|+.+|+|+..+++.=.. ..+  .||  ++++  . ..+-+.++++|+++..
T Consensus       201 tsl~f~~--~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ff--vD~e--g-~~~d~~v~~aL~~L~~  267 (283)
T 2qmx_A          201 TSIVFAL--PNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFY--ADFI--G-HREDQNVHNALENLRE  267 (283)
T ss_dssp             EEEEEEE--ECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEE--EEEE--S-CTTSHHHHHHHHHHHT
T ss_pred             EEEEEEc--CCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEE--EEEe--c-CCCcHHHHHHHHHHHH
Confidence            3444444  799999999999999999999999986322 122  344  3444  2 2234678888887754

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=88.49  E-value=1.3  Score=40.57  Aligned_cols=73  Identities=23%  Similarity=0.269  Sum_probs=44.9

Q ss_pred             CCeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHH--h
Q 023530          127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV--Q  203 (281)
Q Consensus       127 ~~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L--~  203 (281)
                      ++.||+|+++|. |..+-..+.+. ..  ..++++|.+.+   ++..+.++|+++|++...      ..-+++++.-  .
T Consensus         3 ~~irVaIIG~G~iG~~~~~~l~~~-~~--~~elvav~d~~---~~~~~~~~a~~~g~~~~~------~~~e~ll~~~~~~   70 (312)
T 1nvm_B            3 QKLKVAIIGSGNIGTDLMIKVLRN-AK--YLEMGAMVGID---AASDGLARAQRMGVTTTY------AGVEGLIKLPEFA   70 (312)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHH-CS--SEEEEEEECSC---TTCHHHHHHHHTTCCEES------SHHHHHHHSGGGG
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHhh-Cc--CeEEEEEEeCC---hhhhHHHHHHHcCCCccc------CCHHHHHhccCCC
Confidence            468999999987 44333333220 12  36888887765   344478899999987532      1122344332  2


Q ss_pred             CCCEEEEe
Q 023530          204 NTDFLVLA  211 (281)
Q Consensus       204 ~~DlIVLA  211 (281)
                      ++|+|+.|
T Consensus        71 ~iDvV~~a   78 (312)
T 1nvm_B           71 DIDFVFDA   78 (312)
T ss_dssp             GEEEEEEC
T ss_pred             CCcEEEEC
Confidence            68999987

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=88.44  E-value=1.1  Score=41.71  Aligned_cols=74  Identities=12%  Similarity=0.159  Sum_probs=43.9

Q ss_pred             CCCCeeEEEEeeCC-hh-HHHHHHHhhh-cCCC--CeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHH
Q 023530          125 IDPKYKVAVLASKQ-EH-CLVDFLYGWQ-EGKL--PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELL  199 (281)
Q Consensus       125 ~~~~~rIavl~Sg~-Gs-nL~aLl~~~~-~g~l--~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~  199 (281)
                      ++.|+||||++.|. |. -+.++...-. ...+  .++|++|..-.    ...+.+.|+++|+|-.+-     +    +.
T Consensus        23 Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~----~~~a~~~a~~~~~~~~y~-----d----~~   89 (412)
T 4gqa_A           23 MSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQD----QAMAERHAAKLGAEKAYG-----D----WR   89 (412)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSS----HHHHHHHHHHHTCSEEES-----S----HH
T ss_pred             ccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCC----HHHHHHHHHHcCCCeEEC-----C----HH
Confidence            45678999999987 32 2333332210 0111  36888876533    345778899999986552     2    22


Q ss_pred             HHHh--CCCEEEEe
Q 023530          200 ELVQ--NTDFLVLA  211 (281)
Q Consensus       200 ~~L~--~~DlIVLA  211 (281)
                      ++|+  ++|+|++|
T Consensus        90 ~ll~~~~vD~V~I~  103 (412)
T 4gqa_A           90 ELVNDPQVDVVDIT  103 (412)
T ss_dssp             HHHHCTTCCEEEEC
T ss_pred             HHhcCCCCCEEEEC
Confidence            4555  68888876

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=87.94  E-value=1.3  Score=40.02  Aligned_cols=69  Identities=16%  Similarity=0.206  Sum_probs=43.1

Q ss_pred             CeeEEEEeeCC-hhHHHHHHHhhhc-CCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh--
Q 023530          128 KYKVAVLASKQ-EHCLVDFLYGWQE-GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--  203 (281)
Q Consensus       128 ~~rIavl~Sg~-GsnL~aLl~~~~~-g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~--  203 (281)
                      ++||+|++.|. |...   +..++. +...+++++|.+..    ...+.+.|+++|+|..+-     +    +.++++  
T Consensus         2 ~~rigiiG~G~ig~~~---~~~l~~~~~~~~~l~av~d~~----~~~a~~~a~~~~~~~~~~-----~----~~~ll~~~   65 (334)
T 3ohs_X            2 ALRWGIVSVGLISSDF---TAVLQTLPRSEHQVVAVAARD----LSRAKEFAQKHDIPKAYG-----S----YEELAKDP   65 (334)
T ss_dssp             CEEEEEECCSHHHHHH---HHHHTTSCTTTEEEEEEECSS----HHHHHHHHHHHTCSCEES-----S----HHHHHHCT
T ss_pred             ccEEEEECchHHHHHH---HHHHHhCCCCCeEEEEEEcCC----HHHHHHHHHHcCCCcccC-----C----HHHHhcCC
Confidence            57999999987 3322   222221 22236888876643    235678899999985441     2    235555  


Q ss_pred             CCCEEEEec
Q 023530          204 NTDFLVLAR  212 (281)
Q Consensus       204 ~~DlIVLAg  212 (281)
                      ++|+|++|-
T Consensus        66 ~vD~V~i~t   74 (334)
T 3ohs_X           66 NVEVAYVGT   74 (334)
T ss_dssp             TCCEEEECC
T ss_pred             CCCEEEECC
Confidence            688888873

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=87.41  E-value=1.3  Score=40.40  Aligned_cols=69  Identities=17%  Similarity=0.244  Sum_probs=42.3

Q ss_pred             CCCeeEEEEeeCC-hhH-HHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh
Q 023530          126 DPKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ  203 (281)
Q Consensus       126 ~~~~rIavl~Sg~-Gsn-L~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~  203 (281)
                      .+++||+|++.|. |.. +.+|... . +  .+++++|....    ...+.+.|+++|++++.      +    +.++++
T Consensus        11 ~~~~rvgiiG~G~~g~~~~~~l~~~-~-~--~~~lvav~d~~----~~~~~~~~~~~~~~~~~------~----~~~ll~   72 (354)
T 3q2i_A           11 DRKIRFALVGCGRIANNHFGALEKH-A-D--RAELIDVCDID----PAALKAAVERTGARGHA------S----LTDMLA   72 (354)
T ss_dssp             SSCEEEEEECCSTTHHHHHHHHHHT-T-T--TEEEEEEECSS----HHHHHHHHHHHCCEEES------C----HHHHHH
T ss_pred             CCcceEEEEcCcHHHHHHHHHHHhC-C-C--CeEEEEEEcCC----HHHHHHHHHHcCCceeC------C----HHHHhc
Confidence            4678999999997 432 3333331 1 1  36888776543    23466778889984321      2    224454


Q ss_pred             --CCCEEEEec
Q 023530          204 --NTDFLVLAR  212 (281)
Q Consensus       204 --~~DlIVLAg  212 (281)
                        ++|+|++|-
T Consensus        73 ~~~~D~V~i~t   83 (354)
T 3q2i_A           73 QTDADIVILTT   83 (354)
T ss_dssp             HCCCSEEEECS
T ss_pred             CCCCCEEEECC
Confidence              788888874

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=86.90  E-value=2.3  Score=39.43  Aligned_cols=61  Identities=11%  Similarity=0.040  Sum_probs=41.7

Q ss_pred             CCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhh
Q 023530           50 PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM  112 (281)
Q Consensus        50 ~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~  112 (281)
                      .|+||-++++-+.|+.+|+|+..+++.-.. .+.+.-.+-+++.. ..+-..++++|+++...
T Consensus       216 ~~~pGaL~~~L~~Fa~~gINLtkIESRP~~-~~~~~Y~FfiD~eg-~~~d~~v~~AL~~L~~~  276 (329)
T 3luy_A          216 VTGPGVLANLLDVFRDAGLNMTSFISRPIK-GRTGTYSFIVTLDA-APWEERFRDALVEIAEH  276 (329)
T ss_dssp             CCSTTHHHHHHHHHHHTTCCEEEEEEEEET-TEEEEEEEEEEESS-CTTSHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHCCcceEEEEeeECC-CCCccEEEEEEEeC-CcCCHHHHHHHHHHHHh
Confidence            389999999999999999999999985321 11111122245444 34456788888887543

>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*

Probab=86.86  E-value=2.2  Score=38.60  Aligned_cols=80  Identities=11%  Similarity=0.081  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCCh--hHHHHHHHhhhcCCCCee-EEEEEeCCCCCCC-----
Q 023530           99 REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVE-ITCVISNHDRGPN-----  170 (281)
Q Consensus        99 ~~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~G--snL~aLl~~~~~g~l~~e-I~~Visn~pd~~~-----  170 (281)
                      ...+.+.+.+...+.++-         ....||+|.+||+-  ++|-.++..... .++.+ +.+|..||.-++.     
T Consensus         4 ~~~~~~~~~~~i~~~~l~---------~~~~~vlva~SGG~DS~~Ll~ll~~~~~-~~g~~~v~av~vd~g~r~~s~~~~   73 (317)
T 1wy5_A            4 ESRVIRKVLALQNDEKIF---------SGERRVLIAFSGGVDSVVLTDVLLKLKN-YFSLKEVALAHFNHMLRESAERDE   73 (317)
T ss_dssp             HHHHHHHHHHHHHHHCSC---------SSCCEEEEECCSSHHHHHHHHHHHHSTT-TTTCSEEEEEEEECCSSTHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCC---------CCCCEEEEEecchHHHHHHHHHHHHHHH-HcCCCEEEEEEEECCCCcccHHHH
Confidence            345666666666665541         23458999999983  566666654322 23467 8888888743321     


Q ss_pred             hhHHHHHHhCCCCEEEeC
Q 023530          171 SHVIRFLERHGIPYHYLC  188 (281)
Q Consensus       171 a~~~~~A~~~gIP~~~i~  188 (281)
                      ..+.++|+++|||+++++
T Consensus        74 ~~v~~~a~~lgi~~~v~~   91 (317)
T 1wy5_A           74 EFCKEFAKERNMKIFVGK   91 (317)
T ss_dssp             HHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHHHHcCCcEEEEE
Confidence            247889999999999876

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=86.35  E-value=1.4  Score=39.81  Aligned_cols=67  Identities=18%  Similarity=0.270  Sum_probs=38.5

Q ss_pred             CCeeEEEEeeCC-hhH-HHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh-
Q 023530          127 PKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-  203 (281)
Q Consensus       127 ~~~rIavl~Sg~-Gsn-L~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~-  203 (281)
                      +++||+|++.|. |.. +.+|..   .+  .+++++|.+..++    .+.+.|+++|+|..+-     +    +.++++ 
T Consensus         4 ~~~rigiiG~G~ig~~~~~~l~~---~~--~~~~~av~d~~~~----~~~~~a~~~~~~~~~~-----~----~~~ll~~   65 (329)
T 3evn_A            4 SKVRYGVVSTAKVAPRFIEGVRL---AG--NGEVVAVSSRTLE----SAQAFANKYHLPKAYD-----K----LEDMLAD   65 (329)
T ss_dssp             -CEEEEEEBCCTTHHHHHHHHHH---HC--SEEEEEEECSCSS----TTCC---CCCCSCEES-----C----HHHHHTC
T ss_pred             CceEEEEEechHHHHHHHHHHHh---CC--CcEEEEEEcCCHH----HHHHHHHHcCCCcccC-----C----HHHHhcC
Confidence            468999999997 332 333322   23  3688888765432    3456788899874431     1    224555 


Q ss_pred             -CCCEEEEe
Q 023530          204 -NTDFLVLA  211 (281)
Q Consensus       204 -~~DlIVLA  211 (281)
                       ++|+|++|
T Consensus        66 ~~~D~V~i~   74 (329)
T 3evn_A           66 ESIDVIYVA   74 (329)
T ss_dssp             TTCCEEEEC
T ss_pred             CCCCEEEEC
Confidence             67888776

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=85.72  E-value=2.5  Score=40.09  Aligned_cols=77  Identities=14%  Similarity=0.186  Sum_probs=50.7

Q ss_pred             CeeEEEEee-CC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCCh-----------
Q 023530          128 KYKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENER-----------  194 (281)
Q Consensus       128 ~~rIavl~S-g~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~-----------  194 (281)
                      |+||+|++| |+ |+..-+++.+..+   ..+++++.+++   .-..+.+.++++++....+.... +.           
T Consensus         4 m~rI~ILGsTGSIG~~~l~vi~~~p~---~~~v~al~ag~---ni~~l~~~~~~f~~~~v~v~d~~-~~~~l~~~l~~~~   76 (388)
T 1r0k_A            4 PRTVTVLGATGSIGHSTLDLIERNLD---RYQVIALTANR---NVKDLADAAKRTNAKRAVIADPS-LYNDLKEALAGSS   76 (388)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGG---GEEEEEEEESS---CHHHHHHHHHHTTCSEEEESCGG-GHHHHHHHTTTCS
T ss_pred             ceEEEEECCCeEeHHHHHHHHHhCcC---cEEEEEEEcCC---CHHHHHHHHHHcCCcEEEEcChH-HHHHHHHHhccCC
Confidence            589999999 77 6776667765322   26788886765   23356778899999887765211 11           


Q ss_pred             ------HHHHHHHHh-CCCEEEEe
Q 023530          195 ------EEELLELVQ-NTDFLVLA  211 (281)
Q Consensus       195 ------e~~l~~~L~-~~DlIVLA  211 (281)
                            ++.+.+++. .+|+||-|
T Consensus        77 ~~v~~g~~~~~el~~~~iDvVV~a  100 (388)
T 1r0k_A           77 VEAAAGADALVEAAMMGADWTMAA  100 (388)
T ss_dssp             SEEEESHHHHHHHHTSCCSEEEEC
T ss_pred             cEEEeCccHHHHHHcCCCCEEEEe
Confidence                  223345555 58999887

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=85.34  E-value=2  Score=38.81  Aligned_cols=69  Identities=17%  Similarity=0.248  Sum_probs=42.2

Q ss_pred             CCeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh--
Q 023530          127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--  203 (281)
Q Consensus       127 ~~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~--  203 (281)
                      +++||+|++.|. |..+-..+..  .+  ..++++|....    ...+.+.|+++|+|..+-     +    +.++++  
T Consensus         4 ~~~~igiiG~G~~g~~~~~~l~~--~~--~~~l~av~d~~----~~~~~~~~~~~~~~~~~~-----~----~~~ll~~~   66 (330)
T 3e9m_A            4 DKIRYGIMSTAQIVPRFVAGLRE--SA--QAEVRGIASRR----LENAQKMAKELAIPVAYG-----S----YEELCKDE   66 (330)
T ss_dssp             CCEEEEECSCCTTHHHHHHHHHH--SS--SEEEEEEBCSS----SHHHHHHHHHTTCCCCBS-----S----HHHHHHCT
T ss_pred             CeEEEEEECchHHHHHHHHHHHh--CC--CcEEEEEEeCC----HHHHHHHHHHcCCCceeC-----C----HHHHhcCC
Confidence            468999999997 4332222222  12  36888776543    345678899999873331     2    224555  


Q ss_pred             CCCEEEEec
Q 023530          204 NTDFLVLAR  212 (281)
Q Consensus       204 ~~DlIVLAg  212 (281)
                      ++|+|++|-
T Consensus        67 ~~D~V~i~t   75 (330)
T 3e9m_A           67 TIDIIYIPT   75 (330)
T ss_dssp             TCSEEEECC
T ss_pred             CCCEEEEcC
Confidence            788888873

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=85.24  E-value=1.3  Score=37.18  Aligned_cols=63  Identities=19%  Similarity=0.257  Sum_probs=47.4

Q ss_pred             ccEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhccc
Q 023530           41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (281)
Q Consensus        41 ~~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~  116 (281)
                      .-..++++|.   ++||+.+++.+.|+++|+||.-+++.     ..   .+.+-++     .++..++++.+-+.|.++
T Consensus        95 ~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstS-----ei---~Is~vV~-----~~d~~~Av~aLH~~f~l~  160 (181)
T 3s1t_A           95 HIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTS-----EI---RISVLCR-----DTELDKAVVALHEAFGLG  160 (181)
T ss_dssp             CEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE-----TT---EEEEEEE-----GGGHHHHHHHHHHHHTCC
T ss_pred             CEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcC-----CC---EEEEEEe-----HHHHHHHHHHHHHHHcCC
Confidence            4578999987   89999999999999999999988842     11   2223232     355678888888888775

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=84.71  E-value=3.6  Score=37.12  Aligned_cols=71  Identities=18%  Similarity=0.193  Sum_probs=42.6

Q ss_pred             CeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh--CC
Q 023530          128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NT  205 (281)
Q Consensus       128 ~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~--~~  205 (281)
                      |+||+|++.|.-..  ..+..+ ..  .+++++|....++.....+.+.++++|++...+.    +.+    ++|+  ++
T Consensus         2 ~~rvgiiG~G~~~~--~~~~~l-~~--~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~ll~~~~v   68 (337)
T 3ip3_A            2 SLKICVIGSSGHFR--YALEGL-DE--ECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYN----NWW----EMLEKEKP   68 (337)
T ss_dssp             CEEEEEECSSSCHH--HHHTTC-CT--TEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECS----SHH----HHHHHHCC
T ss_pred             ceEEEEEccchhHH--HHHHhc-CC--CcEEEEEecCCchhhHHHHHHHHHHcCCCCcccC----CHH----HHhcCCCC
Confidence            57999999875221  344444 22  4799998875431112345566778898544432    222    4444  78


Q ss_pred             CEEEEe
Q 023530          206 DFLVLA  211 (281)
Q Consensus       206 DlIVLA  211 (281)
                      |+|++|
T Consensus        69 D~V~I~   74 (337)
T 3ip3_A           69 DILVIN   74 (337)
T ss_dssp             SEEEEC
T ss_pred             CEEEEe
Confidence            998887

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=84.63  E-value=2.4  Score=38.34  Aligned_cols=70  Identities=11%  Similarity=0.115  Sum_probs=41.4

Q ss_pred             CeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh--C
Q 023530          128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N  204 (281)
Q Consensus       128 ~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~--~  204 (281)
                      ++||+|++.|. |..   .+..+....-.+++++|....    ...+.+.|+++||+.....    +    +.++++  +
T Consensus         2 ~~rigiIG~G~~g~~---~~~~l~~~~~~~~l~av~d~~----~~~~~~~~~~~g~~~~~~~----~----~~~ll~~~~   66 (344)
T 3mz0_A            2 SLRIGVIGTGAIGKE---HINRITNKLSGAEIVAVTDVN----QEAAQKVVEQYQLNATVYP----N----DDSLLADEN   66 (344)
T ss_dssp             CEEEEEECCSHHHHH---HHHHHHHTCSSEEEEEEECSS----HHHHHHHHHHTTCCCEEES----S----HHHHHHCTT
T ss_pred             eEEEEEECccHHHHH---HHHHHHhhCCCcEEEEEEcCC----HHHHHHHHHHhCCCCeeeC----C----HHHHhcCCC
Confidence            57999999987 332   222222111137888776543    3456778899997544432    1    224454  5


Q ss_pred             CCEEEEec
Q 023530          205 TDFLVLAR  212 (281)
Q Consensus       205 ~DlIVLAg  212 (281)
                      +|+|++|-
T Consensus        67 ~D~V~i~t   74 (344)
T 3mz0_A           67 VDAVLVTS   74 (344)
T ss_dssp             CCEEEECS
T ss_pred             CCEEEECC
Confidence            88888864

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=84.46  E-value=1.8  Score=39.56  Aligned_cols=66  Identities=21%  Similarity=0.222  Sum_probs=41.8

Q ss_pred             CCeeEEEEeeCC-hh--HHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh
Q 023530          127 PKYKVAVLASKQ-EH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ  203 (281)
Q Consensus       127 ~~~rIavl~Sg~-Gs--nL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~  203 (281)
                      +++||+|++.|. |.  -+.+|..   .+  .+++++|.+..    ...+.+.|+++|+|.+. +         +.++++
T Consensus        26 ~~~rigiIG~G~~g~~~~~~~l~~---~~--~~~l~av~d~~----~~~~~~~a~~~g~~~~~-~---------~~~ll~   86 (350)
T 3rc1_A           26 NPIRVGVIGCADIAWRRALPALEA---EP--LTEVTAIASRR----WDRAKRFTERFGGEPVE-G---------YPALLE   86 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHH---CT--TEEEEEEEESS----HHHHHHHHHHHCSEEEE-S---------HHHHHT
T ss_pred             CceEEEEEcCcHHHHHHHHHHHHh---CC--CeEEEEEEcCC----HHHHHHHHHHcCCCCcC-C---------HHHHhc
Confidence            357999999987 33  2344333   12  37888886643    23567788999998752 1         224554


Q ss_pred             --CCCEEEEe
Q 023530          204 --NTDFLVLA  211 (281)
Q Consensus       204 --~~DlIVLA  211 (281)
                        ++|+|++|
T Consensus        87 ~~~~D~V~i~   96 (350)
T 3rc1_A           87 RDDVDAVYVP   96 (350)
T ss_dssp             CTTCSEEEEC
T ss_pred             CCCCCEEEEC
Confidence              67877776

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=84.34  E-value=2.7  Score=38.13  Aligned_cols=70  Identities=23%  Similarity=0.216  Sum_probs=43.2

Q ss_pred             CCCCeeEEEEeeC-C-hh-HHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHH
Q 023530          125 IDPKYKVAVLASK-Q-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL  201 (281)
Q Consensus       125 ~~~~~rIavl~Sg-~-Gs-nL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~  201 (281)
                      ++.++||+|++.| . |. -+.+|..   .+. .+++++|....    ...+.+.|+++|+|..+-     +    +.++
T Consensus        15 ~~~~irvgiIG~G~~~g~~~~~~l~~---~~~-~~~lvav~d~~----~~~~~~~a~~~~~~~~~~-----~----~~~l   77 (340)
T 1zh8_A           15 PLRKIRLGIVGCGIAARELHLPALKN---LSH-LFEITAVTSRT----RSHAEEFAKMVGNPAVFD-----S----YEEL   77 (340)
T ss_dssp             -CCCEEEEEECCSHHHHHTHHHHHHT---TTT-TEEEEEEECSS----HHHHHHHHHHHSSCEEES-----C----HHHH
T ss_pred             CCCceeEEEEecCHHHHHHHHHHHHh---CCC-ceEEEEEEcCC----HHHHHHHHHHhCCCcccC-----C----HHHH
Confidence            4567899999999 3 43 3444322   111 37888876643    234677889999865441     1    2345


Q ss_pred             Hh--CCCEEEEe
Q 023530          202 VQ--NTDFLVLA  211 (281)
Q Consensus       202 L~--~~DlIVLA  211 (281)
                      |+  ++|+|+.|
T Consensus        78 l~~~~vD~V~i~   89 (340)
T 1zh8_A           78 LESGLVDAVDLT   89 (340)
T ss_dssp             HHSSCCSEEEEC
T ss_pred             hcCCCCCEEEEe
Confidence            55  68888887

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=84.25  E-value=2.8  Score=38.31  Aligned_cols=70  Identities=11%  Similarity=0.151  Sum_probs=42.0

Q ss_pred             CCeeEEEEeeCC-hh-HHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh-
Q 023530          127 PKYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-  203 (281)
Q Consensus       127 ~~~rIavl~Sg~-Gs-nL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~-  203 (281)
                      .++||+|++.|. |. -+.+|...  .+  .+++++|....    ...+.+.|+++|++.....    +    +.++++ 
T Consensus        22 ~~~rvgiIG~G~~g~~~~~~l~~~--~~--~~~lvav~d~~----~~~~~~~a~~~g~~~~~~~----~----~~~ll~~   85 (357)
T 3ec7_A           22 MTLKAGIVGIGMIGSDHLRRLANT--VS--GVEVVAVCDIV----AGRAQAALDKYAIEAKDYN----D----YHDLIND   85 (357)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--CT--TEEEEEEECSS----TTHHHHHHHHHTCCCEEES----S----HHHHHHC
T ss_pred             CeeeEEEECCcHHHHHHHHHHHhh--CC--CcEEEEEEeCC----HHHHHHHHHHhCCCCeeeC----C----HHHHhcC
Confidence            457999999987 33 23333311  12  37888876644    2356778999997443332    1    224454 


Q ss_pred             -CCCEEEEec
Q 023530          204 -NTDFLVLAR  212 (281)
Q Consensus       204 -~~DlIVLAg  212 (281)
                       ++|+|++|-
T Consensus        86 ~~~D~V~i~t   95 (357)
T 3ec7_A           86 KDVEVVIITA   95 (357)
T ss_dssp             TTCCEEEECS
T ss_pred             CCCCEEEEcC
Confidence             678888764

>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1

Probab=83.76  E-value=3.9  Score=38.90  Aligned_cols=61  Identities=16%  Similarity=0.215  Sum_probs=44.1

Q ss_pred             CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCCh-----hHHHHHHhCCCCEEEeC
Q 023530          128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNS-----HVIRFLERHGIPYHYLC  188 (281)
Q Consensus       128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a-----~~~~~A~~~gIP~~~i~  188 (281)
                      ..||+|.+||+-  ++|-.++..........++.+|..||.-++.+     .+.++|+++|||+++++
T Consensus        13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~   80 (433)
T 1ni5_A           13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVER   80 (433)
T ss_dssp             CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEE
Confidence            347999999973  66666666543221346899999998544332     47889999999999987

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=83.72  E-value=3.9  Score=37.49  Aligned_cols=68  Identities=10%  Similarity=0.104  Sum_probs=42.1

Q ss_pred             CeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh--CC
Q 023530          128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NT  205 (281)
Q Consensus       128 ~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~--~~  205 (281)
                      ++||+|++.|..+. ..++...+..  .+++++|....    ...+.+.|+++|++..+-     +    +.++|+  ++
T Consensus        26 ~irvgiiG~G~~~~-~~~~~~~~~~--~~~lvav~d~~----~~~a~~~a~~~~~~~~~~-----~----~~~ll~~~~v   89 (361)
T 3u3x_A           26 ELRFAAVGLNHNHI-YGQVNCLLRA--GARLAGFHEKD----DALAAEFSAVYADARRIA-----T----AEEILEDENI   89 (361)
T ss_dssp             CCEEEEECCCSTTH-HHHHHHHHHT--TCEEEEEECSC----HHHHHHHHHHSSSCCEES-----C----HHHHHTCTTC
T ss_pred             CcEEEEECcCHHHH-HHHHHHhhcC--CcEEEEEEcCC----HHHHHHHHHHcCCCcccC-----C----HHHHhcCCCC
Confidence            57999999998542 1222222222  37899887654    235677899998654441     1    224555  58


Q ss_pred             CEEEEe
Q 023530          206 DFLVLA  211 (281)
Q Consensus       206 DlIVLA  211 (281)
                      |+|++|
T Consensus        90 D~V~I~   95 (361)
T 3u3x_A           90 GLIVSA   95 (361)
T ss_dssp             CEEEEC
T ss_pred             CEEEEe
Confidence            888876

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=83.69  E-value=1.9  Score=38.94  Aligned_cols=68  Identities=13%  Similarity=0.181  Sum_probs=40.4

Q ss_pred             CCeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh--
Q 023530          127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--  203 (281)
Q Consensus       127 ~~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~--  203 (281)
                      .++||+|++.|. |..+-..+.+  .+  ..++++|....    ...+.+.|+++|++++  .    +    +.++++  
T Consensus         3 ~~~rvgiiG~G~~g~~~~~~l~~--~~--~~~l~av~d~~----~~~~~~~a~~~g~~~~--~----~----~~~~l~~~   64 (344)
T 3euw_A            3 LTLRIALFGAGRIGHVHAANIAA--NP--DLELVVIADPF----IEGAQRLAEANGAEAV--A----S----PDEVFARD   64 (344)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH--CT--TEEEEEEECSS----HHHHHHHHHTTTCEEE--S----S----HHHHTTCS
T ss_pred             CceEEEEECCcHHHHHHHHHHHh--CC--CcEEEEEECCC----HHHHHHHHHHcCCcee--C----C----HHHHhcCC
Confidence            468999999987 4332222222  12  36888775543    2346677888885432  1    1    224555  


Q ss_pred             CCCEEEEec
Q 023530          204 NTDFLVLAR  212 (281)
Q Consensus       204 ~~DlIVLAg  212 (281)
                      ++|+|++|-
T Consensus        65 ~~D~V~i~t   73 (344)
T 3euw_A           65 DIDGIVIGS   73 (344)
T ss_dssp             CCCEEEECS
T ss_pred             CCCEEEEeC
Confidence            678888764

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=83.54  E-value=2.5  Score=38.23  Aligned_cols=71  Identities=6%  Similarity=-0.021  Sum_probs=41.0

Q ss_pred             CeeEEEEeeCC-hh-HHHHHHHhhhcC--CCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh
Q 023530          128 KYKVAVLASKQ-EH-CLVDFLYGWQEG--KLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ  203 (281)
Q Consensus       128 ~~rIavl~Sg~-Gs-nL~aLl~~~~~g--~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~  203 (281)
                      +.||||.+.|. |. -+.++...-.-.  ...++|++|..-.    ...+.+.|+++|+|..+-+         +.++|+
T Consensus         6 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~----~~~a~~~a~~~g~~~~~~d---------~~~ll~   72 (390)
T 4h3v_A            6 NLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRD----AEAVRAAAGKLGWSTTETD---------WRTLLE   72 (390)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSS----HHHHHHHHHHHTCSEEESC---------HHHHTT
T ss_pred             cCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCC----HHHHHHHHHHcCCCcccCC---------HHHHhc
Confidence            46899999987 32 233332221111  1235888876543    2456788999999966522         224454


Q ss_pred             --CCCEEEEe
Q 023530          204 --NTDFLVLA  211 (281)
Q Consensus       204 --~~DlIVLA  211 (281)
                        ++|+|+.|
T Consensus        73 ~~~iDaV~I~   82 (390)
T 4h3v_A           73 RDDVQLVDVC   82 (390)
T ss_dssp             CTTCSEEEEC
T ss_pred             CCCCCEEEEe
Confidence              56766665

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=83.47  E-value=2.8  Score=37.61  Aligned_cols=66  Identities=9%  Similarity=0.132  Sum_probs=40.9

Q ss_pred             CeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh--C
Q 023530          128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N  204 (281)
Q Consensus       128 ~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~--~  204 (281)
                      ++||+|++.|. |..+-..+.+  .+  ..++++|....    ...+.+.|+++|++  + .    +    +.++++  +
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~--~~--~~~l~av~d~~----~~~~~~~~~~~~~~--~-~----~----~~~~l~~~~   63 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSG--NA--DARLVAVADAF----PAAAEAIAGAYGCE--V-R----T----IDAIEAAAD   63 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--CT--TEEEEEEECSS----HHHHHHHHHHTTCE--E-C----C----HHHHHHCTT
T ss_pred             ceEEEEECCCHHHHHHHHHHhh--CC--CcEEEEEECCC----HHHHHHHHHHhCCC--c-C----C----HHHHhcCCC
Confidence            57999999987 4332222222  12  36888775533    34567788999998  3 2    1    224455  7


Q ss_pred             CCEEEEec
Q 023530          205 TDFLVLAR  212 (281)
Q Consensus       205 ~DlIVLAg  212 (281)
                      +|+|++|-
T Consensus        64 ~D~V~i~t   71 (331)
T 4hkt_A           64 IDAVVICT   71 (331)
T ss_dssp             CCEEEECS
T ss_pred             CCEEEEeC
Confidence            88888874

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=83.14  E-value=1.9  Score=39.82  Aligned_cols=66  Identities=18%  Similarity=0.192  Sum_probs=41.7

Q ss_pred             CeeEEEEeeC-C-hh-HHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh-
Q 023530          128 KYKVAVLASK-Q-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-  203 (281)
Q Consensus       128 ~~rIavl~Sg-~-Gs-nL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~-  203 (281)
                      ++||+|++.| . |. -+.+|..   .+  .+++++|....    ...+.+.|+++|+|++.      +    +.++|+ 
T Consensus         2 ~~rigiiG~G~~~~~~~~~~l~~---~~--~~~l~av~d~~----~~~~~~~a~~~g~~~~~------~----~~ell~~   62 (387)
T 3moi_A            2 KIRFGICGLGFAGSVLMAPAMRH---HP--DAQIVAACDPN----EDVRERFGKEYGIPVFA------T----LAEMMQH   62 (387)
T ss_dssp             CEEEEEECCSHHHHTTHHHHHHH---CT--TEEEEEEECSC----HHHHHHHHHHHTCCEES------S----HHHHHHH
T ss_pred             ceEEEEEeCCHHHHHHHHHHHHh---CC--CeEEEEEEeCC----HHHHHHHHHHcCCCeEC------C----HHHHHcC
Confidence            6799999999 4 32 2343332   12  37888887643    23466788899998432      2    224454 


Q ss_pred             -CCCEEEEec
Q 023530          204 -NTDFLVLAR  212 (281)
Q Consensus       204 -~~DlIVLAg  212 (281)
                       ++|+|+++-
T Consensus        63 ~~vD~V~i~t   72 (387)
T 3moi_A           63 VQMDAVYIAS   72 (387)
T ss_dssp             SCCSEEEECS
T ss_pred             CCCCEEEEcC
Confidence             689988873

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=83.12  E-value=5.6  Score=35.65  Aligned_cols=69  Identities=9%  Similarity=0.166  Sum_probs=40.2

Q ss_pred             CCCeeEEEEeeCC-hhH-HHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh
Q 023530          126 DPKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ  203 (281)
Q Consensus       126 ~~~~rIavl~Sg~-Gsn-L~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~  203 (281)
                      ..++||+|++.|. |.. +.++...  .+  .+++++|....    ...+.+.|+++|++..+ +    +    +.++++
T Consensus         6 ~~~~~v~iiG~G~ig~~~~~~l~~~--~~--~~~~vav~d~~----~~~~~~~a~~~g~~~~~-~----~----~~~~l~   68 (346)
T 3cea_A            6 RKPLRAAIIGLGRLGERHARHLVNK--IQ--GVKLVAACALD----SNQLEWAKNELGVETTY-T----N----YKDMID   68 (346)
T ss_dssp             CCCEEEEEECCSTTHHHHHHHHHHT--CS--SEEEEEEECSC----HHHHHHHHHTTCCSEEE-S----C----HHHHHT
T ss_pred             CCcceEEEEcCCHHHHHHHHHHHhc--CC--CcEEEEEecCC----HHHHHHHHHHhCCCccc-C----C----HHHHhc
Confidence            5678999999987 433 2333211  12  36788776543    23456678889987443 1    1    223444


Q ss_pred             --CCCEEEEe
Q 023530          204 --NTDFLVLA  211 (281)
Q Consensus       204 --~~DlIVLA  211 (281)
                        ++|+|++|
T Consensus        69 ~~~~D~V~i~   78 (346)
T 3cea_A           69 TENIDAIFIV   78 (346)
T ss_dssp             TSCCSEEEEC
T ss_pred             CCCCCEEEEe
Confidence              57777766

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=82.33  E-value=3.1  Score=37.62  Aligned_cols=68  Identities=12%  Similarity=0.172  Sum_probs=42.1

Q ss_pred             CeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh--C
Q 023530          128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N  204 (281)
Q Consensus       128 ~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~--~  204 (281)
                      |+||+|.+.|. |..   ++..+..- -.+++++|....    ...+.+.|+++|++..+-     +    +.++++  +
T Consensus         2 ~~rvgiIG~G~~g~~---~~~~l~~~-~~~~l~av~d~~----~~~~~~~~~~~~~~~~~~-----~----~~~ll~~~~   64 (344)
T 3ezy_A            2 SLRIGVIGLGRIGTI---HAENLKMI-DDAILYAISDVR----EDRLREMKEKLGVEKAYK-----D----PHELIEDPN   64 (344)
T ss_dssp             CEEEEEECCSHHHHH---HHHHGGGS-TTEEEEEEECSC----HHHHHHHHHHHTCSEEES-----S----HHHHHHCTT
T ss_pred             eeEEEEEcCCHHHHH---HHHHHHhC-CCcEEEEEECCC----HHHHHHHHHHhCCCceeC-----C----HHHHhcCCC
Confidence            57999999987 332   23333221 136888776543    245677889999975542     1    224555  7


Q ss_pred             CCEEEEec
Q 023530          205 TDFLVLAR  212 (281)
Q Consensus       205 ~DlIVLAg  212 (281)
                      +|+|++|-
T Consensus        65 ~D~V~i~t   72 (344)
T 3ezy_A           65 VDAVLVCS   72 (344)
T ss_dssp             CCEEEECS
T ss_pred             CCEEEEcC
Confidence            89888874

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=81.69  E-value=4.2  Score=36.96  Aligned_cols=70  Identities=13%  Similarity=0.141  Sum_probs=40.6

Q ss_pred             CCCeeEEEEeeCC-hhH-HHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCC--EEEeCCCCCChHHHHHHH
Q 023530          126 DPKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP--YHYLCAKENEREEELLEL  201 (281)
Q Consensus       126 ~~~~rIavl~Sg~-Gsn-L~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP--~~~i~~k~~~~e~~l~~~  201 (281)
                      ..++||+|++.|. |.. +.+|..   .+  ..++++|.+..    ...+.+.|+++|+|  .....    +    +.++
T Consensus         4 ~~~~~vgiiG~G~ig~~~~~~l~~---~~--~~~lv~v~d~~----~~~~~~~a~~~~~~~~~~~~~----~----~~~l   66 (362)
T 1ydw_A            4 ETQIRIGVMGCADIARKVSRAIHL---AP--NATISGVASRS----LEKAKAFATANNYPESTKIHG----S----YESL   66 (362)
T ss_dssp             --CEEEEEESCCTTHHHHHHHHHH---CT--TEEEEEEECSS----HHHHHHHHHHTTCCTTCEEES----S----HHHH
T ss_pred             CCceEEEEECchHHHHHHHHHHhh---CC--CcEEEEEEcCC----HHHHHHHHHHhCCCCCCeeeC----C----HHHH
Confidence            4578999999987 432 333322   12  36888776643    23467788999974  22221    1    2244


Q ss_pred             Hh--CCCEEEEec
Q 023530          202 VQ--NTDFLVLAR  212 (281)
Q Consensus       202 L~--~~DlIVLAg  212 (281)
                      ++  ++|+|++|-
T Consensus        67 l~~~~~D~V~i~t   79 (362)
T 1ydw_A           67 LEDPEIDALYVPL   79 (362)
T ss_dssp             HHCTTCCEEEECC
T ss_pred             hcCCCCCEEEEcC
Confidence            54  688888873

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=81.64  E-value=2.6  Score=37.38  Aligned_cols=67  Identities=12%  Similarity=0.127  Sum_probs=40.6

Q ss_pred             CeeEEEEeeCC-hhH-HHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCC
Q 023530          128 KYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT  205 (281)
Q Consensus       128 ~~rIavl~Sg~-Gsn-L~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~  205 (281)
                      ++||+|++.|. |.. +...+..  .+  .+++++|....    ...+.+.|+++|++. + .    +.+    ++++++
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~--~~--~~~l~av~d~~----~~~~~~~a~~~~~~~-~-~----~~~----~ll~~~   67 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTK--SE--RFEFVGAFTPN----KVKREKICSDYRIMP-F-D----SIE----SLAKKC   67 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTS--CS--SSEEEEEECSC----HHHHHHHHHHHTCCB-C-S----CHH----HHHTTC
T ss_pred             cCcEEEEecCHHHHHHHHHHHHh--CC--CeEEEEEECCC----HHHHHHHHHHcCCCC-c-C----CHH----HHHhcC
Confidence            57999999987 332 2222221  12  36888776643    235677888999886 2 2    222    333378


Q ss_pred             CEEEEec
Q 023530          206 DFLVLAR  212 (281)
Q Consensus       206 DlIVLAg  212 (281)
                      |+|++|-
T Consensus        68 D~V~i~t   74 (308)
T 3uuw_A           68 DCIFLHS   74 (308)
T ss_dssp             SEEEECC
T ss_pred             CEEEEeC
Confidence            8888763

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=80.80  E-value=4.3  Score=37.60  Aligned_cols=72  Identities=11%  Similarity=0.063  Sum_probs=42.7

Q ss_pred             CCeeEEEEeeCC----hh-HHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCC--EEEeCCCCCChHHHHH
Q 023530          127 PKYKVAVLASKQ----EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP--YHYLCAKENEREEELL  199 (281)
Q Consensus       127 ~~~rIavl~Sg~----Gs-nL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP--~~~i~~k~~~~e~~l~  199 (281)
                      +++||+|++.|.    |. -+.++..   .+  .++++++++++   ....+.+.|+++|+|  ..+     .+.+ +++
T Consensus        11 ~~~rvgiiG~G~~~~ig~~h~~~~~~---~~--~~~lva~v~d~---~~~~a~~~a~~~g~~~~~~~-----~~~~-~ll   76 (398)
T 3dty_A           11 QPIRWAMVGGGSQSQIGYIHRCAALR---DN--TFVLVAGAFDI---DPIRGSAFGEQLGVDSERCY-----ADYL-SMF   76 (398)
T ss_dssp             SCEEEEEEECCTTCSSHHHHHHHHHG---GG--SEEEEEEECCS---SHHHHHHHHHHTTCCGGGBC-----SSHH-HHH
T ss_pred             CcceEEEEcCCccchhHHHHHHHHhh---CC--CeEEEEEEeCC---CHHHHHHHHHHhCCCcceee-----CCHH-HHH
Confidence            468999999997    32 2233322   22  26888766664   234567889999997  222     1233 343


Q ss_pred             HHH---h-CCCEEEEec
Q 023530          200 ELV---Q-NTDFLVLAR  212 (281)
Q Consensus       200 ~~L---~-~~DlIVLAg  212 (281)
                      +.-   . ++|+|+++-
T Consensus        77 ~~~~~~~~~vD~V~i~t   93 (398)
T 3dty_A           77 EQEARRADGIQAVSIAT   93 (398)
T ss_dssp             HHHTTCTTCCSEEEEES
T ss_pred             hcccccCCCCCEEEECC
Confidence            321   1 489988874

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=80.28  E-value=5.2  Score=35.92  Aligned_cols=68  Identities=15%  Similarity=0.190  Sum_probs=39.8

Q ss_pred             CeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh--CC
Q 023530          128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NT  205 (281)
Q Consensus       128 ~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~--~~  205 (281)
                      ++||+|++.|..+.. .++..++..  .+++++|....++    .+.+.|++++.+..+ .    +    +.++|+  ++
T Consensus         4 ~~rvgiiG~G~~~~~-~~~~~l~~~--~~~lvav~d~~~~----~~~~~a~~~~~~~~~-~----~----~~~ll~~~~~   67 (336)
T 2p2s_A            4 KIRFAAIGLAHNHIY-DMCQQLIDA--GAELAGVFESDSD----NRAKFTSLFPSVPFA-A----S----AEQLITDASI   67 (336)
T ss_dssp             CCEEEEECCSSTHHH-HHHHHHHHT--TCEEEEEECSCTT----SCHHHHHHSTTCCBC-S----C----HHHHHTCTTC
T ss_pred             ccEEEEECCChHHHH-HhhhhhcCC--CcEEEEEeCCCHH----HHHHHHHhcCCCccc-C----C----HHHHhhCCCC
Confidence            579999999875431 223333222  3689888775432    346778888533211 1    1    224555  67


Q ss_pred             CEEEEe
Q 023530          206 DFLVLA  211 (281)
Q Consensus       206 DlIVLA  211 (281)
                      |+|+.+
T Consensus        68 D~V~i~   73 (336)
T 2p2s_A           68 DLIACA   73 (336)
T ss_dssp             CEEEEC
T ss_pred             CEEEEe
Confidence            888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	281
d1meoa_	205	c.65.1.1 (A:) Glycinamide ribonucleotide transform	1e-07
d1u8sa2	93	d.58.18.5 (A:88-180) putative transcriptional repr	3e-06
d1jkxa_	209	c.65.1.1 (A:) Glycinamide ribonucleotide transform	3e-06
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	7e-06
d1zpva1	83	d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Strepto	3e-05

>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]} Length = 205

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 1e-07
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 3/104 (2%)

Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189
           +VAVL S     L   +   +E     +I  VISN                    ++   
Sbjct: 2   RVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLY 61

Query: 190 KENEREEELLELV---QNTDFLVLARYMQPVPLQKEAYLGYKLL 230
           K     +  ++LV    + D + LA +M+ +          K+L
Sbjct: 62  KNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKML 105

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 42.6 bits (100), Expect = 3e-06
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 39  TLTHGIHVF-HCPDEVGIVAKLSECIASRGGNILAADV------FVPEKKNVFYSRSEFI 91
           T  + + V+    D++G+  K ++  A R   + +          +  ++N F+      
Sbjct: 2   THAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISAR 61

Query: 92  FDPIKWPREQMDEDFFKLSKMFNA 115
                    Q+ E+F  L    + 
Sbjct: 62  V-DSGCNLMQLQEEFDALCTALDV 84

>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} Length = 209

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (105), Expect = 3e-06
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 3/89 (3%)

Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH-DRGPNSHVIRFLERHGIPYHYLC 188
            + VL S     L   +   +  K+   +  V SN  D        +             
Sbjct: 2   NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAF 61

Query: 189 AKENEREEELLELVQ--NTDFLVLARYMQ 215
                 + EL+  +     D +VLA +M+
Sbjct: 62  DSREAYDRELIHEIDMYAPDVVVLAGFMR 90

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 41.3 bits (97), Expect = 7e-06
 Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 4/76 (5%)

Query: 47  FHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDF 106
               D  GI  ++   +   G NI+ + + +  K+             I     +++   
Sbjct: 10  AVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNI----TRVETTL 65

Query: 107 FKLSKMFNAMRSVVRV 122
             L +  + +  + R 
Sbjct: 66  PLLGQQHDLITMMKRT 81

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 47  FHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDF 106
               D+ GIVA +S  IA  G NI      V ++     +               +  +F
Sbjct: 7   VVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQ---DFTYLRNEF 63

Query: 107 FKLSKMFN 114
               +  N
Sbjct: 64  EAFGQTLN 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	281
d1jkxa_	209	Glycinamide ribonucleotide transformylase, GART {E	99.93
d1meoa_	205	Glycinamide ribonucleotide transformylase, GART {H	99.93
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	99.78
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	99.77
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	99.76
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	99.72
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	99.7
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	99.63
d1zgha2	164	Methionyl-tRNAfmet formyltransferase {Clostridium	98.73
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	98.09
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	98.04
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.86
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.84
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.73
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.49
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.14
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	96.92
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.64
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	95.52
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	95.5
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	95.07
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	94.79
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	94.68
d2d13a1	226	Hypothetical protein PH1257 {Archaeon Pyrococcus h	94.41
d2cdqa3	75	Aspartokinase {Thale cress (Arabidopsis thaliana)	92.09
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	91.66
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	91.15
d1ni5a1	227	tRNA-Ile-lysidine synthetase, TilS, N-terminal dom	91.03
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	90.82
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	90.16
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	88.67
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	88.48
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	86.81
d1wy5a1	216	TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId	85.19
d2j0wa2	91	Aspartokinase {Escherichia coli [TaxId: 562]}	85.13
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	84.46
d1zhva2	66	Hypothetical protein Atu0741 {Agrobacterium tumefa	83.92
d1ulra_	87	Acylphosphatase {Thermus thermophilus [TaxId: 274]	82.71
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	82.51
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	80.27

>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=3.9e-26  Score=199.77  Aligned_cols=125  Identities=21%  Similarity=0.229  Sum_probs=111.1

Q ss_pred             eeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCC---hHHHHHHHHh-
Q 023530          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENE---REEELLELVQ-  203 (281)
Q Consensus       129 ~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~~---~e~~l~~~L~-  203 (281)
                      ||||||+||+||||++|+++++.+.++++|++||||+   +++.++++|+..++|..... .+...   .|+++.+.++ 
T Consensus         1 MkIaVl~SG~GSnL~aLl~a~~~~~l~~~I~~Visn~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   77 (209)
T d1jkxa_           1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNK---ADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDM   77 (209)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHHTTSSSSEEEEEEESC---TTCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGG
T ss_pred             CEEEEEEecCcHHHHHHHHHHHcCCCCCEEEEEEeCC---CCcccchhhhccccceeeeeccccccccchHHHHHHHHHh
Confidence            6999999999999999999999999999999999998   67889999999999998877 33222   3566788888 


Q ss_pred             -CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Ccce
Q 023530          204 -NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLC  260 (281)
Q Consensus       204 -~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~  260 (281)
                       ++|++|+||||+||+++|++.|++++||   ||||+|||+    .|++|++++|++  |||+
T Consensus        78 ~~~Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~~rG~----~p~~~~i~~g~~~~G~t~  136 (209)
T d1jkxa_          78 YAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGL----HTHRQALENGDEEHGTSV  136 (209)
T ss_dssp             GCCSEEEESSCCSCCCHHHHHHTTTSEEEEESSCTTSCCSS----CHHHHHHHTTCSEEEEEE
T ss_pred             cCCCEEEEeeeeEecChhhhcccccCEEEeCCchhcccCCc----CchhHHHHCCCeeecceE
Confidence             8999999999999999999999999999   999999996    899999999874  4444

>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.8e-25  Score=195.05  Aligned_cols=124  Identities=22%  Similarity=0.197  Sum_probs=110.1

Q ss_pred             eEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCC-CCCC---hHHHHHHHHh--
Q 023530          130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KENE---REEELLELVQ--  203 (281)
Q Consensus       130 rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~-k~~~---~e~~l~~~L~--  203 (281)
                      |||||+||+||||++|+++++.+.++++|++|+||+   |++.++.+|+..++|...+.. ....   .++++.+.++  
T Consensus         2 ri~vl~SG~Gsnl~aLl~~~~~~~l~~~I~~Vitn~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~   78 (205)
T d1meoa_           2 RVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNK---AAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEF   78 (205)
T ss_dssp             EEEEEESSSCTTHHHHHHHHHSTTCSCEEEEEEESS---TTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEEeCCcHhHHHHHHHHhcCCCCCEEEEEEECC---ccccccccccccccccccccccccchhhhHHHHHHHHHhhc
Confidence            899999999999999999999999999999999998   678899999999999988762 2222   2456778887  


Q ss_pred             CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Ccce
Q 023530          204 NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLC  260 (281)
Q Consensus       204 ~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~  260 (281)
                      ++|++|+||||+|+++++++.|++++||   ||||+|||+    .|++||+++|++  ||++
T Consensus        79 ~~Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~~rG~----~~~~~ai~~g~~~~G~ti  136 (205)
T d1meoa_          79 SIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGS----NAHEQALETGVTVTGCTV  136 (205)
T ss_dssp             TCCEEEEESCCSCCCHHHHHHTTTSEEEEESSSTTSSCSS----CHHHHHHHHTCSEEEEEE
T ss_pred             ccceeeeechhcccCHHHHHhccCCeeecCccccchhhhh----hhHHHHHhcCCcccceeE
Confidence            8999999999999999999999999999   999999996    899999999975  5544

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.78  E-value=3.5e-19  Score=133.56  Aligned_cols=75  Identities=24%  Similarity=0.165  Sum_probs=70.1

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccce
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS  118 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~  118 (281)
                      |+++||++|+||||||++||++|+++|+||+|++|++.  .+.|+|++.+++|+ ..+.++|+++|+.+++++|+++.
T Consensus         1 Mk~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~--~~~f~~~~~v~~~~-~~~~~~l~~~l~~la~~l~l~i~   75 (83)
T d1zpva1           1 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL--DEYFTMMAVVSSDE-KQDFTYLRNEFEAFGQTLNVKIN   75 (83)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEESS-CCCHHHHHHHHHHHHHHHTEEEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEe--CCEEEEEEEEEEec-CCCHHHHHHHHHHHHHHcCcEEE
Confidence            46899999999999999999999999999999999886  68999999999997 78899999999999999999853

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.9e-19  Score=153.53  Aligned_cols=122  Identities=17%  Similarity=0.113  Sum_probs=97.3

Q ss_pred             eeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCC--ChhHHHHHHhCCCCEEEeCCCC--CChHHHHHHHH
Q 023530          129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKE--NEREEELLELV  202 (281)
Q Consensus       129 ~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~--~a~~~~~A~~~gIP~~~i~~k~--~~~e~~l~~~L  202 (281)
                      |||+|++|+..  .+|+.|++   .|   .+|++|+|. ||++  ..++.+.|++++||++.+....  ...+.++++.+
T Consensus         1 MkI~~~G~~~~~~~~l~~L~~---~~---~~i~~V~t~-p~~~~~~~~v~~~a~~~~ipv~~~~~~~~~~~~~~~~~~~l   73 (203)
T d2bw0a2           1 MKIAVIGQSLFGQEVYCHLRK---EG---HEVVGVFTV-PDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKY   73 (203)
T ss_dssp             CEEEEECCHHHHHHHHHHHHH---TT---CEEEEEEEC-CCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHH---CC---CcEEEEEcC-CCcCcCCChhhhhHHhcCCcccccccccccccccHHHHHHH
Confidence            69999988773  56666665   24   699999996 5543  3578999999999998876221  11234577777


Q ss_pred             h--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCCCccee
Q 023530          203 Q--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDKGCLCS  261 (281)
Q Consensus       203 ~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~g~~~~  261 (281)
                      +  ++|++|++||++||++++++.++.+++|   ||||+|||+    .|++||+++|++=+.++
T Consensus        74 ~~~~~Dliv~~~~~~ii~~~~l~~~~~g~iN~H~slLP~yrG~----~pi~wai~~g~~~~GvT  133 (203)
T d2bw0a2          74 QALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGA----SAINWTLIHGDKKGGFS  133 (203)
T ss_dssp             HTTCCSEEEESSCSSCCCHHHHTCSTTCEEEEESSCTTTTBSS----CHHHHHHHTTCSEEEEE
T ss_pred             HHhCCCceEEeecchhhhhhhhhhhhhHhhhhhhccccccccc----ceeeeeecccccccCce
Confidence            7  8999999999999999999999999999   999999997    99999999997533333

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=99.76  E-value=1.8e-18  Score=132.50  Aligned_cols=78  Identities=17%  Similarity=0.147  Sum_probs=69.2

Q ss_pred             cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc------CCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhh
Q 023530           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP------EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (281)
Q Consensus        40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~------~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l  113 (281)
                      ..++.++|.|+||||||++||++|+++|+||++++|++.      ...+.|+|++++.+|+ +.+.++|+++|+.+|+++
T Consensus         4 ~~tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~-~~~~~~l~~~l~~l~~~l   82 (93)
T d1u8sa2           4 AYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS-GCNLMQLQEEFDALCTAL   82 (93)
T ss_dssp             SEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT-TSCHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCc-cccHHHHHHHHHHHHHHc
Confidence            456788899999999999999999999999999999873      2245899999999998 899999999999999999


Q ss_pred             cccce
Q 023530          114 NAMRS  118 (281)
Q Consensus       114 ~l~~~  118 (281)
                      +++|+
T Consensus        83 ~v~~s   87 (93)
T d1u8sa2          83 DVQGS   87 (93)
T ss_dssp             TCEEE
T ss_pred             eeEEE
Confidence            99865

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=9.5e-18  Score=145.21  Aligned_cols=114  Identities=17%  Similarity=0.149  Sum_probs=94.0

Q ss_pred             eeEEEEeeCC-h-hHHHHHHHhhhcCCCCeeEEEEEeCCCCCC-----ChhHHHHHHhCCCCEEEeCCCCCChHHHHHHH
Q 023530          129 YKVAVLASKQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYLCAKENEREEELLEL  201 (281)
Q Consensus       129 ~rIavl~Sg~-G-snL~aLl~~~~~g~l~~eI~~Visn~pd~~-----~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~  201 (281)
                      |||++|+++. | .+|++|+++   |   .+|++|+|+ ||.+     .+++.++|+++|||++..++ . + ++++.+.
T Consensus         1 Mkiv~~~~~~~g~~~l~~L~~~---g---~~I~~Vvt~-~~~~~~~~~~~~~~~~a~~~~i~~~~~~~-~-~-~~~~~~~   70 (203)
T d2blna2           1 MKTVVFAYHDMGCLGIEALLAA---G---YEISAIFTH-TDNPGEKAFYGSVARLAAERGIPVYAPDN-V-N-HPLWVER   70 (203)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHT---T---CEEEEEECC-CC------CCCCHHHHHHHHTCCEECCSC-C-C-SHHHHHH
T ss_pred             CeEEEEecCHHHHHHHHHHHHC---C---CCEEEEEcC-CCCCCcccccCHHHHHHHHcCCcceeccc-c-c-chhhhhh
Confidence            6899999877 3 678988874   5   599999997 4433     25688999999999987542 1 1 2356677


Q ss_pred             Hh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC
Q 023530          202 VQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK  256 (281)
Q Consensus       202 L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~  256 (281)
                      ++  ++|+++++||++|+++++++.++.++||   |+||.|||.    .|++|++++|++
T Consensus        71 i~~~~~Dlii~~g~~~ii~~~il~~~~~~~iN~H~slLP~yrG~----~p~~wai~~g~~  126 (203)
T d2blna2          71 IAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGR----APLNWVLVNGET  126 (203)
T ss_dssp             HHHTCCSEEEEESCCSCCCHHHHTTCTTCEEEEESSCTTTTEES----CHHHHHHHTTCS
T ss_pred             hhhhcccceeeeecccchhcccchhhHHHHHHHhhhcchhhhhh----hhhhhhhhcccc
Confidence            77  8999999999999999999999999999   999999996    999999999974

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=7.1e-17  Score=139.24  Aligned_cols=116  Identities=18%  Similarity=0.214  Sum_probs=95.0

Q ss_pred             CCeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCC--------ChhHHHHHHhCCCCEEEeCCCCCChHH
Q 023530          127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP--------NSHVIRFLERHGIPYHYLCAKENEREE  196 (281)
Q Consensus       127 ~~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~--------~a~~~~~A~~~gIP~~~i~~k~~~~e~  196 (281)
                      .+|||+||+|+.-  .+|++|++.   |   .+|++|+|. ||.+        .......+.++++|+......   .++
T Consensus         2 ~~mKI~f~G~~~~~~~~L~~L~~~---~---~~i~~Vit~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~   71 (206)
T d1fmta2           2 ESLRIIFAGTPDFAARHLDALLSS---G---HNVVGVFTQ-PDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSL---RPQ   71 (206)
T ss_dssp             CCCEEEEEECSHHHHHHHHHHHHT---T---CEEEEEECC-CCBC------CBCCHHHHHHHHTTCCEECCSCS---CSH
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhC---C---CCEEEEEeC-CCcccccCccccccchhhhhhccCccccccccc---cch
Confidence            4689999998763  678887763   4   589999996 4432        235678999999999886522   123


Q ss_pred             HHHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC
Q 023530          197 ELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK  256 (281)
Q Consensus       197 ~l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~  256 (281)
                      ++.+.++  ++|++|++||++|+++++++.++.++||   |+||+|||+    .|++||+++|++
T Consensus        72 ~~~~~~~~~~~d~~v~~~~~~ii~~~il~~~k~g~iN~Hps~LP~yRG~----~pi~wai~nge~  132 (206)
T d1fmta2          72 ENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGA----APIQRSLWAGDA  132 (206)
T ss_dssp             HHHHHHHHTTCSEEEEESCCSCCCHHHHHSSTTCEEEEESSSTTTTBSS----CHHHHHHHHTCS
T ss_pred             hhHHHHhhhcceEEEeeccccccchhhHhcCCCCeeecCchhhHhhhhh----hhhhhHHHcCCc
Confidence            4567777  8999999999999999999999999999   999999997    999999999975

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=99.63  E-value=5.8e-16  Score=116.72  Aligned_cols=75  Identities=13%  Similarity=0.115  Sum_probs=67.7

Q ss_pred             cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccce
Q 023530           40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS  118 (281)
Q Consensus        40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~  118 (281)
                      .++++||+.|+||||||++||++|+++||||+|++|++.  .+.|.+.+.++.+.  .+.++|+++|+++++++|+++.
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~--~~~~~~~~~v~~~~--~~~~~l~~~L~~l~~~l~l~i~   77 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISGSP--SNITRVETTLPLLGQQHDLITM   77 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEECH--HHHHHHHHHHHHHHHHHTCEEE
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEE--CCeeEEEEEEEcCc--ccHHHHHHHHHHHHHHhCCEEE
Confidence            367999999999999999999999999999999999876  67888888888875  3689999999999999999864

>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.73  E-value=4.5e-09  Score=87.17  Aligned_cols=84  Identities=12%  Similarity=0.098  Sum_probs=62.2

Q ss_pred             hHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCc
Q 023530          172 HVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMH  246 (281)
Q Consensus       172 ~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~  246 (281)
                      .....+++.+.++...-.+. +.+ ...+.++  ++|+++++||++|+++++++.|  +++|   |+||.|||.    .|
T Consensus        15 ~~~~~~k~~~~~~~~~~~~n-~~~-~~~~~i~~~~~D~ii~~g~~~ii~~~il~~~--~~in~H~s~LP~yRG~----~p   86 (164)
T d1zgha2          15 NAQKFKKENESKYNTTIITN-KDE-LTFEKVKLINPEYILFPHWSWIIPKEIFENF--TCVVFHMTDLPFGRGG----SP   86 (164)
T ss_dssp             HHHHHHHHTTTTEEEEEECS-GGG-CCHHHHHHHCCSEEEESSCCSCCCHHHHTTS--CEEEEESSCTTTTEES----CH
T ss_pred             HHHHHHHHhcCccceeeecC-hhH-HHHHHHHhcCCCEEEEeCcccccCHHHHhhC--CCccCCCCchhccccc----cc
Confidence            35667777777776643111 111 1123344  9999999999999999999976  4999   999999996    99


Q ss_pred             hhHHHHhcCCCcceeee
Q 023530          247 MPKHMILTDKGCLCSTR  263 (281)
Q Consensus       247 vh~a~l~~d~g~~~~~~  263 (281)
                      ++||+++|++-+.++.+
T Consensus        87 ~~wai~~~~~~~Gvtih  103 (164)
T d1zgha2          87 LQNLIERGIKKTKISAI  103 (164)
T ss_dssp             HHHHHHTTCCEEEEEEE
T ss_pred             cccccccccccccceeE
Confidence            99999999865555544

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.09  E-value=7.4e-07  Score=64.76  Aligned_cols=65  Identities=20%  Similarity=0.204  Sum_probs=43.4

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      -|.+.|.||||+.++|++.++++++||..++|.+.. +.....+.++++..  +.+++.+-+.|..+-
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~--~~~l~~ll~kL~~l~   68 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE--GGDFEKILERVKTFD   68 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC--SSCHHHHHHHHHTCT
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcC--cccHHHHHHHHHcCC
Confidence            478999999999999999999999999999998632 22233445555543  235677766666543

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.04  E-value=1.2e-05  Score=58.18  Aligned_cols=66  Identities=15%  Similarity=0.073  Sum_probs=49.2

Q ss_pred             cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530           42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (281)
Q Consensus        42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~  111 (281)
                      ...|.+.-.|+||+++.|++.|+++|+||..++.......|.-.|.++++-+    ..+++.+++.++-+
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD~~----~~~~vl~~I~~~~~   68 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD----VPDDVRTAIAAAVD   68 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC----CCHHHHHHHHHHHT
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEcCCC----ccHHHHHHHHcCCC
Confidence            4567788899999999999999999999999887654445665666666533    24566666666543

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.86  E-value=2.9e-05  Score=56.51  Aligned_cols=68  Identities=21%  Similarity=0.166  Sum_probs=55.3

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      .+++|++.-.|+||++++||..|+.+|.||..++.......|...|.+.++.++  ...+++...|+++-
T Consensus         2 k~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~--~~i~qi~kQl~Kli   69 (78)
T d2fgca2           2 REHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD--KTIEQIEKQAYKLV   69 (78)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT--THHHHHHHHHTTST
T ss_pred             ceEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCH--HHHHHHHHHHhCCc
Confidence            468999999999999999999999999999999987656677777777777543  35677777776654

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.84  E-value=1.5e-05  Score=57.87  Aligned_cols=68  Identities=19%  Similarity=0.108  Sum_probs=53.8

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      ++.+|++.-.|+||++++||..|+.+|+||..++..-....|...|.+.++.++  ...+++...|+++-
T Consensus         1 Mk~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~--~~i~qi~kQL~Klv   68 (77)
T d2pc6a2           1 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPD--EIVEQITKQLNKLI   68 (77)
T ss_dssp             EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECH--HHHHHHHHHHHHST
T ss_pred             CcEEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCH--HHHHHHHHHHhCCc
Confidence            467899999999999999999999999999999987655677777777777543  24566666666653

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=2.3e-05  Score=57.26  Aligned_cols=38  Identities=18%  Similarity=0.188  Sum_probs=33.5

Q ss_pred             ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530           41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP   78 (281)
Q Consensus        41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~   78 (281)
                      .+..|++.=.|+||++++|++.|+++|+||.++.....
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~   47 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTS   47 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEEC
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccC
Confidence            45688888899999999999999999999999887653

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=0.0001  Score=53.23  Aligned_cols=66  Identities=20%  Similarity=0.196  Sum_probs=48.1

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS  110 (281)
Q Consensus        43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la  110 (281)
                      .+|++.-.|+||++++||..|+.+|+||..++..-....|.-.|.+.+...  +...+++...|+++-
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~--~~~i~qi~kQL~Kli   67 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGD--EKVLEQIEKQLHKLV   67 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESC--HHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECC--HHHHHHHHHHHhCCC
Confidence            578888899999999999999999999999988654455655555555432  223555556665543

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.14  E-value=0.00049  Score=48.63  Aligned_cols=46  Identities=13%  Similarity=0.094  Sum_probs=36.7

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI   91 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~   91 (281)
                      -|+|.-.||||.+++|++.|+++|+||..++.....+.|.  .|+.++
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i--~Riiv~   50 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGI--LRGIVS   50 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEE--EEEEES
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCE--EEEEEC
Confidence            4889999999999999999999999999999865433443  355443

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.92  E-value=0.002  Score=45.28  Aligned_cols=57  Identities=16%  Similarity=0.117  Sum_probs=42.2

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK  108 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~  108 (281)
                      +|.|.-+|+||-.+++++.|+++|+||..+..+...+.+  .+++.++      +.+.-.+.|++
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~--~~vl~vd------d~~~a~~~L~~   57 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVA--NVVIRPS------NMDKCIEVLKE   57 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEE--EEEEEES------CHHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcE--EEEEEEC------CHHHHHHHHHH
Confidence            578888999999999999999999999999887653222  2333332      35656666654

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.64  E-value=0.0024  Score=51.32  Aligned_cols=73  Identities=23%  Similarity=0.348  Sum_probs=50.3

Q ss_pred             CCCeeEEEEeeCC-hhH-HHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh
Q 023530          126 DPKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ  203 (281)
Q Consensus       126 ~~~~rIavl~Sg~-Gsn-L~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~  203 (281)
                      .+|+||||+++|. |.. +..++..  .+  ..++++|.+-+   +...++.+|+++|+|+.+      ...+++++..+
T Consensus         2 ~kkirvaIIGaG~ig~~~~~~~l~~--~~--~~el~avas~~---~~~~~~~~a~~~~i~~~~------~~~d~l~~~~~   68 (157)
T d1nvmb1           2 NQKLKVAIIGSGNIGTDLMIKVLRN--AK--YLEMGAMVGID---AASDGLARAQRMGVTTTY------AGVEGLIKLPE   68 (157)
T ss_dssp             CSCEEEEEECCSHHHHHHHHHHHHH--CS--SEEEEEEECSC---TTCHHHHHHHHTTCCEES------SHHHHHHHSGG
T ss_pred             CCCcEEEEEcCcHHHHHHHHHHHhh--CC--cceEEEEEecc---hhccchhhhhhcCCcccc------cceeeeeeccc
Confidence            4578999999987 443 3344432  12  36899998854   455778999999999876      22234555554


Q ss_pred             --CCCEEEEe
Q 023530          204 --NTDFLVLA  211 (281)
Q Consensus       204 --~~DlIVLA  211 (281)
                        ++|+|+.|
T Consensus        69 ~~~iDiVf~A   78 (157)
T d1nvmb1          69 FADIDFVFDA   78 (157)
T ss_dssp             GGGEEEEEEC
T ss_pred             ccccCEEEEc
Confidence              79999885

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.52  E-value=0.022  Score=40.54  Aligned_cols=64  Identities=9%  Similarity=-0.018  Sum_probs=43.0

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530           44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK  111 (281)
Q Consensus        44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~  111 (281)
                      .+.+.-.|+||-.+++-+.++++|+|+..+++.-.. ..+.|.--++++..   .+ +.++++++++.+
T Consensus         4 ~~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~g~---~~-~~~~~~l~~L~~   68 (80)
T d2qmwa2           4 FLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSA---IT-TDIKKVIAILET   68 (80)
T ss_dssp             EEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCC---SC-HHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEecC---Cc-HHHHHHHHHHHH
Confidence            344556799999999999999999999999986322 22333223444422   23 457777777654

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.50  E-value=0.023  Score=42.02  Aligned_cols=74  Identities=15%  Similarity=0.093  Sum_probs=51.0

Q ss_pred             CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhccc
Q 023530           39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM  116 (281)
Q Consensus        39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~-~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~  116 (281)
                      ...+..|.+..+|+||-.+++-+.++++|+|+..+++.-... .+.|.  +=+++.. . .-+.++.+++.+.+..+..
T Consensus        13 ~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~--F~id~eg-~-~~~~i~~~l~~L~~~~~~~   87 (97)
T d1phza1          13 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYE--FFTYLDK-R-TKPVLGSIIKSLRNDIGAT   87 (97)
T ss_dssp             SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEE--EEECBCG-G-GHHHHHHHHHHHHHTTCCC
T ss_pred             CCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEE--EEEEccc-C-ChHHHHHHHHHHHHhhCcE
Confidence            344566666678999999999999999999999999864322 22222  2233433 2 3467888888887766543

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=95.07  E-value=0.024  Score=39.00  Aligned_cols=60  Identities=18%  Similarity=0.207  Sum_probs=42.3

Q ss_pred             EEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhh
Q 023530           43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (281)
Q Consensus        43 ~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l  113 (281)
                      .++++.|.   ++||+.+++-+.|+++|+||.-++|...    ..  .+.+-+++     ++.+++++.+-++|
T Consensus         2 a~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~S----e~--~Is~~V~~-----~d~~~Av~~Lh~~F   64 (67)
T d2hmfa2           2 CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSS----EV--NISFVIDE-----KDLLNCVRKLHEKF   64 (67)
T ss_dssp             EEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSC----SS--EEEEEEEG-----GGHHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCc----cc--eEEEEEeH-----HHHHHHHHHHHHHH
Confidence            46889994   9999999999999999999999998532    11  23333332     44556665555443

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=94.79  E-value=0.036  Score=40.96  Aligned_cols=64  Identities=13%  Similarity=0.174  Sum_probs=45.9

Q ss_pred             cccEEEEEEc---CCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhc
Q 023530           40 LTHGIHVFHC---PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN  114 (281)
Q Consensus        40 ~~~~iltV~G---~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~  114 (281)
                      ..-..|++.|   +++||+.+++-+.|+++|+||.-++|.... .     .+.|.++.     +++.++++.+-++|.
T Consensus        13 ~nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se-~-----~Isf~V~~-----~d~~~a~~~L~~~f~   79 (100)
T d2hmfa3          13 KNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE-T-----NISLVVSE-----EDVDKALKALKREFG   79 (100)
T ss_dssp             EEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTT-C-----CEEEEECS-----TTHHHHHHHHHHHHC
T ss_pred             CCEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCc-c-----eEEEEEeH-----HHHHHHHHHHHHHHH
Confidence            3557899999   699999999999999999999999985421 1     34455554     234455555555554

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=94.68  E-value=0.078  Score=42.02  Aligned_cols=84  Identities=13%  Similarity=0.152  Sum_probs=57.3

Q ss_pred             CCeeEEEEeeCC--hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCC-----------C
Q 023530          127 PKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN-----------E  193 (281)
Q Consensus       127 ~~~rIavl~Sg~--GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~-----------~  193 (281)
                      +|+||+||+|.+  |.+..+++++..+   .++|.++.+|+   --....+.|++|+-.+.++..+..           +
T Consensus         1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d---~f~v~~lsa~~---N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~   74 (150)
T d1r0ka2           1 QPRTVTVLGATGSIGHSTLDLIERNLD---RYQVIALTANR---NVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSS   74 (150)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTGG---GEEEEEEEESS---CHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCS
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCCC---CcEEEEEEeCC---CHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcc
Confidence            378999999987  6777778886443   47999999986   234577889999988888763210           0


Q ss_pred             -----hHHHHHHHHh-CCCEEEEe--ccccc
Q 023530          194 -----REEELLELVQ-NTDFLVLA--RYMQP  216 (281)
Q Consensus       194 -----~e~~l~~~L~-~~DlIVLA--gYMrI  216 (281)
                           .++.+.++.. ++|++|.|  |+--+
T Consensus        75 ~~v~~g~~~l~~~~~~~~D~vv~Ai~G~~GL  105 (150)
T d1r0ka2          75 VEAAAGADALVEAAMMGADWTMAAIIGCAGL  105 (150)
T ss_dssp             SEEEESHHHHHHHHTSCCSEEEECCCSGGGH
T ss_pred             cccccCccchheecccccceeeeecCchhHH
Confidence                 1234444434 78888877  55443

>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Hypothetical protein PH1257
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.41  E-value=0.1  Score=44.02  Aligned_cols=105  Identities=15%  Similarity=0.088  Sum_probs=66.1

Q ss_pred             CeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC---------hhHHHHHHhCCCCEEEeCCC-CC-ChHH
Q 023530          128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCAK-EN-EREE  196 (281)
Q Consensus       128 ~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~---------a~~~~~A~~~gIP~~~i~~k-~~-~~e~  196 (281)
                      |+||+++.||+--+..|+..+.+.|   .+|+++++-.+...+         .-+..-|+..|||....... .. +..+
T Consensus         3 ~~~V~vl~SGGKDS~lAl~~a~~~G---~eV~~L~t~~~~~~~s~~~h~~~~~ll~~qAealgiPl~~~~~~~~~e~~~~   79 (226)
T d2d13a1           3 LADVAVLYSGGKDSNYALYWALKSG---LRVRYLVSMVSENEESYMYHTPNVELTSLQARALGIPIIKGFTKGEKEKEVE   79 (226)
T ss_dssp             SCEEEEECCSSHHHHHHHHHHHHTT---CEEEEEEEEECCC---------CCTTHHHHHHHHTCCEEEEEC--CTTSHHH
T ss_pred             ceeEEEEecCcHHHHHHHHHHHHcC---CeeEEEEEEecCCCCcCcccCCCHHHHHHHHHhcCCCceEEecCCcchHHHH
Confidence            6799999999853445677777777   478776655433222         13566799999998776622 11 2225


Q ss_pred             HHHHHHh--CCCEEEEecccccCChhHHhhhcCCcee-----ccCCCCCC
Q 023530          197 ELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE-----SLSSKGSL  239 (281)
Q Consensus       197 ~l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN-----SLLP~f~G  239 (281)
                      ++.+.++  ++|.||   ++=|.+..- ..|..++..     ++.|.|.-
T Consensus        80 ~l~~~l~~~~v~~vv---~Gdi~~~~~-r~r~e~~c~~~gl~~~~PLW~~  125 (226)
T d2d13a1          80 DLKNVLEGLKVDGIV---AGALASRYQ-KERIENVARELGLKVYTPAWEK  125 (226)
T ss_dssp             HHHHHHHTBCCSEEE---CCCSSCHHH-HHHHHHHHHHHTCEEECTTTTC
T ss_pred             HHHHHHHhcCccceE---ecceecHHH-HHHHHhhHHhcCcEEEecccCC
Confidence            6777777  899876   455666443 333333333     78888854

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.09  E-value=0.17  Score=35.23  Aligned_cols=61  Identities=11%  Similarity=0.043  Sum_probs=43.4

Q ss_pred             cEEEEEEc--CCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhh
Q 023530           42 HGIHVFHC--PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF  113 (281)
Q Consensus        42 ~~iltV~G--~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l  113 (281)
                      +.+++++|  .++|||.+++-+.|+++|+||.=++|...    .-.+.+.+  +     .++..+++..+-+.|
T Consensus         1 ~a~IsvVG~~~~~~Giaarif~aL~~~~InV~mIsqg~s----e~~Is~vV--~-----~~d~~~Av~~Lh~~f   63 (75)
T d2cdqa3           1 RAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGAS----KVNISFIV--N-----EAEAEGCVQALHKSF   63 (75)
T ss_dssp             EEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECTT----CSEEEEEE--E-----HHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChhHHHHHHHHHHHcCCceEEEEcCcc----ceEEEEEE--e-----HHHHHHHHHHHHHHH
Confidence            35788888  46789999999999999999999998542    22223333  2     355666666665555

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.66  E-value=0.12  Score=37.29  Aligned_cols=36  Identities=14%  Similarity=0.113  Sum_probs=32.4

Q ss_pred             ccEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeee
Q 023530           41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF   76 (281)
Q Consensus        41 ~~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~   76 (281)
                      .-..+++.|+   ++||+.+++-+.|+++|+||.-++|.
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~S   50 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATS   50 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEec
Confidence            4468999985   99999999999999999999999873

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.15  E-value=0.35  Score=37.99  Aligned_cols=70  Identities=13%  Similarity=0.104  Sum_probs=43.9

Q ss_pred             CeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEE--EeCCCCCChHHHHHHHHh-
Q 023530          128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH--YLCAKENEREEELLELVQ-  203 (281)
Q Consensus       128 ~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~--~i~~k~~~~e~~l~~~L~-  203 (281)
                      ++||||.+.|. |......+..  .+  .++|++|.+..    ...+.+.++++++|..  .++    +    +.++++ 
T Consensus         1 kiki~iIG~G~~g~~~~~~l~~--~~--~~~i~ai~d~~----~~~~~~~~~~~~~~~~~~~~~----~----~~~ll~~   64 (184)
T d1ydwa1           1 QIRIGVMGCADIARKVSRAIHL--AP--NATISGVASRS----LEKAKAFATANNYPESTKIHG----S----YESLLED   64 (184)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHH--CT--TEEEEEEECSS----HHHHHHHHHHTTCCTTCEEES----S----HHHHHHC
T ss_pred             CeEEEEEcCCHHHHHHHHHHHh--CC--CCEEEEEEeCC----ccccccchhccccccceeecC----c----HHHhhhc
Confidence            57999999987 5433223332  12  37899876654    2346778899998732  221    2    234555 


Q ss_pred             -CCCEEEEecc
Q 023530          204 -NTDFLVLARY  213 (281)
Q Consensus       204 -~~DlIVLAgY  213 (281)
                       ++|+|++|.-
T Consensus        65 ~~iD~v~I~tp   75 (184)
T d1ydwa1          65 PEIDALYVPLP   75 (184)
T ss_dssp             TTCCEEEECCC
T ss_pred             cccceeeeccc
Confidence             7999999753

>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: tRNA-Ile-lysidine synthetase, TilS, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.03  E-value=0.44  Score=38.98  Aligned_cols=61  Identities=16%  Similarity=0.215  Sum_probs=45.9

Q ss_pred             CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCCh-----hHHHHHHhCCCCEEEeC
Q 023530          128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNS-----HVIRFLERHGIPYHYLC  188 (281)
Q Consensus       128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a-----~~~~~A~~~gIP~~~i~  188 (281)
                      .+||+|-+||+-  ..|-.++..+.......++.+|..||--++++     .+.++|+++|||+++..
T Consensus        13 ~kkvlva~SGG~DS~~Ll~ll~~~~~~~~~~~l~~~~vdh~~r~~s~~~~~~~~~~~~~~~i~~~i~~   80 (227)
T d1ni5a1          13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVER   80 (227)
T ss_dssp             CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCcEEEEecCcHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCcchhhhHHHHHHHHhhccCcceeee
Confidence            459999999984  56666776665444567899999997433443     47889999999999875

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=90.82  E-value=0.25  Score=38.27  Aligned_cols=67  Identities=15%  Similarity=0.204  Sum_probs=42.4

Q ss_pred             CeeEEEEeeCC-hh-HHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCC
Q 023530          128 KYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT  205 (281)
Q Consensus       128 ~~rIavl~Sg~-Gs-nL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~  205 (281)
                      |+||||.+.|. |. .....+..  .+  ..++++|.+.++    ..+.+.++++++|++-      ..+    ++++++
T Consensus         1 Kiri~iIG~G~~g~~~~~~~l~~--~~--~~~i~~v~d~~~----~~~~~~~~~~~~~~~~------~~~----~l~~~~   62 (164)
T d1tlta1           1 KLRIGVVGLGGIAQKAWLPVLAA--AS--DWTLQGAWSPTR----AKALPICESWRIPYAD------SLS----SLAASC   62 (164)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHS--CS--SEEEEEEECSSC----TTHHHHHHHHTCCBCS------SHH----HHHTTC
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHh--CC--CcEEEEEEechh----Hhhhhhhhcccccccc------cch----hhhhhc
Confidence            57999999987 42 22333332  12  378988877543    3467889999987421      122    233589


Q ss_pred             CEEEEec
Q 023530          206 DFLVLAR  212 (281)
Q Consensus       206 DlIVLAg  212 (281)
                      |+|+++-
T Consensus        63 D~V~I~t   69 (164)
T d1tlta1          63 DAVFVHS   69 (164)
T ss_dssp             SEEEECS
T ss_pred             ccccccc
Confidence            9888874

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=90.16  E-value=0.56  Score=36.86  Aligned_cols=55  Identities=9%  Similarity=0.129  Sum_probs=41.6

Q ss_pred             CeeEEEEeeCC--hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC
Q 023530          128 KYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC  188 (281)
Q Consensus       128 ~~rIavl~Sg~--GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~  188 (281)
                      |+||+||+|.+  |.+.-+++++..+   .++|+++.+|+   --....+-|.+|+-.+.++.
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d---~f~v~~Lsa~~---N~~~L~~q~~~f~pk~v~i~   57 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPE---HFRVVALVAGK---NVTRMVEQCLEFSPRYAVMD   57 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTT---TEEEEEEEESS---CHHHHHHHHHHHCCSEEEES
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCC---CcEEEEEEecC---cHHHHHHHHHHHhhcccccc
Confidence            67999999987  5777777776432   47999999986   23456778999997777775

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=88.67  E-value=0.69  Score=36.26  Aligned_cols=67  Identities=24%  Similarity=0.255  Sum_probs=41.8

Q ss_pred             CeeEEEEeeCC-hhH--HHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh-
Q 023530          128 KYKVAVLASKQ-EHC--LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-  203 (281)
Q Consensus       128 ~~rIavl~Sg~-Gsn--L~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~-  203 (281)
                      +.||+|.+.|. |..  +.++.. .  +. ..+|++|.+..    ...+..+++++|++..+-     +    +.++++ 
T Consensus         3 kirigiIG~G~~g~~~h~~~l~~-~--~~-~~~i~~v~d~~----~~~~~~~~~~~~~~~~~~-----~----~~ell~~   65 (181)
T d1zh8a1           3 KIRLGIVGCGIAARELHLPALKN-L--SH-LFEITAVTSRT----RSHAEEFAKMVGNPAVFD-----S----YEELLES   65 (181)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHT-T--TT-TEEEEEEECSS----HHHHHHHHHHHSSCEEES-----C----HHHHHHS
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHh-C--CC-CeEEEEEEecc----Hhhhhhhhccccccceee-----e----eeccccc
Confidence            57999999987 332  333322 1  21 26888887643    234677888999886551     2    224555 


Q ss_pred             -CCCEEEEe
Q 023530          204 -NTDFLVLA  211 (281)
Q Consensus       204 -~~DlIVLA  211 (281)
                       ++|+|+++
T Consensus        66 ~~id~v~I~   74 (181)
T d1zh8a1          66 GLVDAVDLT   74 (181)
T ss_dssp             SCCSEEEEC
T ss_pred             cccceeecc
Confidence             68888876

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.48  E-value=0.27  Score=37.99  Aligned_cols=63  Identities=19%  Similarity=0.443  Sum_probs=40.2

Q ss_pred             eeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCCCE
Q 023530          129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF  207 (281)
Q Consensus       129 ~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~Dl  207 (281)
                      |||+|.++|+ |+   +|+..+.+.  +.++  .++++   ......++++++|+.+..      +    ..+++++.|+
T Consensus         1 MkIg~IG~G~mG~---al~~~l~~~--~~~i--~v~~r---~~~~~~~l~~~~g~~~~~------~----~~~~~~~~dv   60 (152)
T d2ahra2           1 MKIGIIGVGKMAS---AIIKGLKQT--PHEL--IISGS---SLERSKEIAEQLALPYAM------S----HQDLIDQVDL   60 (152)
T ss_dssp             CEEEEECCSHHHH---HHHHHHTTS--SCEE--EEECS---SHHHHHHHHHHHTCCBCS------S----HHHHHHTCSE
T ss_pred             CEEEEEeccHHHH---HHHHHHHhC--CCeE--EEEcC---hHHhHHhhccccceeeec------h----hhhhhhccce
Confidence            6899999988 54   344443332  2455  46765   345677888898865422      1    2244568999


Q ss_pred             EEEe
Q 023530          208 LVLA  211 (281)
Q Consensus       208 IVLA  211 (281)
                      |+||
T Consensus        61 Iila   64 (152)
T d2ahra2          61 VILG   64 (152)
T ss_dssp             EEEC
T ss_pred             eeee
Confidence            9998

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=86.81  E-value=0.65  Score=37.91  Aligned_cols=76  Identities=9%  Similarity=0.105  Sum_probs=45.4

Q ss_pred             CCCCeeEEEEeeCCh-h-HHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHH
Q 023530          125 IDPKYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV  202 (281)
Q Consensus       125 ~~~~~rIavl~Sg~G-s-nL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L  202 (281)
                      ++++.||||++.|.- . .+...+...  +  ..+|++|++.++    ..+.+.++++|++...+. ..++    +.++|
T Consensus        30 ~~~~iriaiIG~G~~~~~~~~~~~~~~--~--~~~ivav~d~~~----~~a~~~~~~~~i~~~~~~-~~~d----~~ell   96 (221)
T d1h6da1          30 EDRRFGYAIVGLGKYALNQILPGFAGC--Q--HSRIEALVSGNA----EKAKIVAAEYGVDPRKIY-DYSN----FDKIA   96 (221)
T ss_dssp             CCCCEEEEEECCSHHHHHTHHHHTTTC--S--SEEEEEEECSCH----HHHHHHHHHTTCCGGGEE-CSSS----GGGGG
T ss_pred             CCCCEEEEEEcCcHHHHHHHHHHHHhC--C--CceEEEEecCCH----HHHHHHHHhhcccccccc-ccCc----hhhhc
Confidence            456789999999863 2 222222221  1  479999877542    346888999999732211 0112    22455


Q ss_pred             h--CCCEEEEecc
Q 023530          203 Q--NTDFLVLARY  213 (281)
Q Consensus       203 ~--~~DlIVLAgY  213 (281)
                      +  ++|+|+.+.=
T Consensus        97 ~~~~iD~V~I~tp  109 (221)
T d1h6da1          97 KDPKIDAVYIILP  109 (221)
T ss_dssp             GCTTCCEEEECSC
T ss_pred             ccccceeeeeccc
Confidence            5  7899888643

>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: TilS-like protein Aq 1887
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.19  E-value=1.9  Score=34.78  Aligned_cols=61  Identities=15%  Similarity=0.032  Sum_probs=41.3

Q ss_pred             CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCCh-----hHHHHHHhCCCCEEEeC
Q 023530          128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNS-----HVIRFLERHGIPYHYLC  188 (281)
Q Consensus       128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a-----~~~~~A~~~gIP~~~i~  188 (281)
                      ..||+|-+||+.  ..|-.++..++...-..+|.++..||--++++     .+.++|+++|||+++..
T Consensus        24 ~~kv~Va~SGG~DS~~Ll~lL~~~~~~~~~~~i~~~~vdh~~r~~s~~~~~~~~~~~~~l~i~~~i~~   91 (216)
T d1wy5a1          24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKIFVGK   91 (216)
T ss_dssp             CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCeEEEEeCCcHHHHHHHHHHHHHHHhcCCCcEEEEEeecccccchhhhhhHHHHHHHhhhhhhhhhc
Confidence            458999999984  56666666543321113688777787433332     36888999999998865

>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=85.13  E-value=0.15  Score=36.71  Aligned_cols=37  Identities=11%  Similarity=0.113  Sum_probs=31.8

Q ss_pred             cccEEEEEEcCC---CcchHHHHHHHHHhCCCeEeEeeee
Q 023530           40 LTHGIHVFHCPD---EVGIVAKLSECIASRGGNILAADVF   76 (281)
Q Consensus        40 ~~~~iltV~G~D---rpGIVa~VS~~La~~giNI~dl~q~   76 (281)
                      .....|++.|.+   ++|+.++|.+.|+++|+||.-++|.
T Consensus        12 ~~~~~i~v~g~~m~~~~G~~~~if~~L~~~~Inv~mis~S   51 (91)
T d2j0wa2          12 RNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTS   51 (91)
T ss_dssp             EEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEE
T ss_pred             CCEEEEEEEeCCCCCCcCHHHHHHHHHHHcCCcEEEEEcc
Confidence            355789998875   5799999999999999999999873

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=84.46  E-value=1.2  Score=36.41  Aligned_cols=71  Identities=10%  Similarity=0.134  Sum_probs=44.2

Q ss_pred             CCCCeeEEEEeeCCh------hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEE-eCCCCCChHHH
Q 023530          125 IDPKYKVAVLASKQE------HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY-LCAKENEREEE  197 (281)
Q Consensus       125 ~~~~~rIavl~Sg~G------snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~-i~~k~~~~e~~  197 (281)
                      +.+++||||.+-|..      .-+.++...  .+  .++|++|.+-.    ...+.+.+++++++... ++    +    
T Consensus        13 ~~k~irvgiIG~G~~~~~~~~~h~~ai~~~--~~--~~~ivav~d~~----~~~~~~~~~~~~~~~~~~~~----~----   76 (237)
T d2nvwa1          13 SSRPIRVGFVGLTSGKSWVAKTHFLAIQQL--SS--QFQIVALYNPT----LKSSLQTIEQLQLKHATGFD----S----   76 (237)
T ss_dssp             GGCCEEEEEECCCSTTSHHHHTHHHHHHHT--TT--TEEEEEEECSC----HHHHHHHHHHTTCTTCEEES----C----
T ss_pred             CCCCeEEEEEecCccccHHHHHHHHHHHhc--CC--CeEEEEEEcCC----HHHHHHHHHhcccccceeec----c----
Confidence            467799999998863      223333321  12  37899876532    23467789999987432 22    2    


Q ss_pred             HHHHHh--CCCEEEEe
Q 023530          198 LLELVQ--NTDFLVLA  211 (281)
Q Consensus       198 l~~~L~--~~DlIVLA  211 (281)
                      +.++++  ++|+|+.+
T Consensus        77 ~~~l~~~~~iD~V~i~   92 (237)
T d2nvwa1          77 LESFAQYKDIDMIVVS   92 (237)
T ss_dssp             HHHHHHCTTCSEEEEC
T ss_pred             hhhcccccccceeecc
Confidence            224555  78988887

>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Atu0741-like
domain: Hypothetical protein Atu0741
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=83.92  E-value=0.46  Score=32.36  Aligned_cols=34  Identities=29%  Similarity=0.473  Sum_probs=29.3

Q ss_pred             EEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530           44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV   77 (281)
Q Consensus        44 iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~   77 (281)
                      .|++.|+   |-+||+++|++.|+++|+.+--++++-
T Consensus         4 ~l~v~g~l~l~~vGi~a~i~~~La~a~Is~~~vSty~   40 (66)
T d1zhva2           4 CFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVSTFD   40 (66)
T ss_dssp             EEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEECSS
T ss_pred             EEEEccCCCchhHhHHHHHHHHHHHCCCCeEEEEeee
Confidence            3566666   899999999999999999999998874

>d1ulra_ d.58.10.1 (A:) Acylphosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=82.71  E-value=2.4  Score=29.75  Aligned_cols=58  Identities=19%  Similarity=0.123  Sum_probs=47.0

Q ss_pred             HHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEe
Q 023530          102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS  163 (281)
Q Consensus       102 L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Vis  163 (281)
                      +|......|.++++..|..++.+-    +|-+.+.|....++.+++.++.|.-.+.|.-|=.
T Consensus        16 FR~~~~~~A~~~~l~G~V~N~~dG----~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~v~~   73 (87)
T d1ulra_          16 YRAFAQKKALELGLSGYAENLPDG----RVEVVAEGPKEALELFLHHLKQGPRLARVEAVEV   73 (87)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECTTS----CEEEEEESCHHHHHHHHHHHHHCSTTCEEEEEEE
T ss_pred             CHHHHHHHHHHcCCeEEEEECCCC----CEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEE
Confidence            788899999999999987665443    5888999999999999999988865577766543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=82.51  E-value=1.9  Score=32.74  Aligned_cols=73  Identities=12%  Similarity=0.152  Sum_probs=41.8

Q ss_pred             CeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh---
Q 023530          128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ---  203 (281)
Q Consensus       128 ~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~---  203 (281)
                      .-+|+|+++|. |...-.++..  .|   ++|.++-.| +     .-+++|+++|....+........+.+..+.+.   
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~--~G---a~vi~v~~~-~-----~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~   95 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKA--YG---AFVVCTARS-P-----RRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAI   95 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TT---CEEEEEESC-H-----HHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCEEEEEcccccchhhHhhHhh--hc---ccccccchH-H-----HHHHHHHHcCCcEEEeccccccccchhhhhhhccc
Confidence            34788888775 3444334443  34   577665554 2     23789999998765544222222333334443   


Q ss_pred             --CCCEEEEe
Q 023530          204 --NTDFLVLA  211 (281)
Q Consensus       204 --~~DlIVLA  211 (281)
                        .+|+++=+
T Consensus        96 g~g~D~vid~  105 (170)
T d1e3ja2          96 GDLPNVTIDC  105 (170)
T ss_dssp             SSCCSEEEEC
T ss_pred             ccCCceeeec
Confidence              58988754

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=80.27  E-value=0.94  Score=34.43  Aligned_cols=62  Identities=19%  Similarity=0.221  Sum_probs=37.6

Q ss_pred             eeEEEEeeCC-hhHH-HHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCCC
Q 023530          129 YKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD  206 (281)
Q Consensus       129 ~rIavl~Sg~-GsnL-~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~D  206 (281)
                      |||+|.+.|+ |+.+ +.|+++   |  +.+|  .++|+   ......++++++|+.+..-. +          .+++.|
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~---~--~~~i--~v~~r---~~~~~~~l~~~~~~~~~~~~-~----------~v~~~D   59 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQ---G--GYRI--YIANR---GAEKRERLEKELGVETSATL-P----------ELHSDD   59 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH---C--SCEE--EEECS---SHHHHHHHHHHTCCEEESSC-C----------CCCTTS
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC---C--CCcE--EEEeC---ChhHHHHhhhhccccccccc-c----------cccccc
Confidence            6899999988 5433 446653   4  2455  45675   33455677888887543311 1          123678


Q ss_pred             EEEEe
Q 023530          207 FLVLA  211 (281)
Q Consensus       207 lIVLA  211 (281)
                      +|+||
T Consensus        60 iv~la   64 (152)
T d1yqga2          60 VLILA   64 (152)
T ss_dssp             EEEEC
T ss_pred             eEEEe
Confidence            88887