Citrus Sinensis ID: 023545

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
Protein Sequence
MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccEEEEEEEEEEcccccccccHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccEEEEEccccccccccccccccccHHEcHcccccccccccccccEEEEccEccccccccccccccHEEEEEEcccccccHEHHHHEEEcccccccEEEccccccccccHHHHHHHHHHHcccccccccccHHHcccccccccccccccccccccccHHHccccccccccccccccc
Coil and Loop (DISEMBL)
malssisplsikslnfcsssskgpyqlhalskpLWVACQissktesdgqfpdcsnnqcagpyaklkNWRVFVSTALAAAVVASCSSNISALADLNKYeaetrgefgigsaaqfgsADLRKAVHVKENFRanftsadmresdfsgskfngAYLEKAVAYKAnftgadlsdTLMDRMVLNEANLTNAVLVRTVLtrsdlggaiiegadfSDAVIDLAQKQALCKyangtnpitgvstrkslgcgnsrrnaygspsspllsappqklldrdgfcdsgtglcdak
Flexible Loop (DISEMBL)
malssisplsiKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRanftsadmresdfsGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYangtnpitgvstrKSLGCGNSRRnaygspsspllsappqklLDRDGFCDSGTGLCDAK
Low Complexity Region (SEG)
MAlssisplsikslNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRvfvstalaaavvascssnisaLADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRNAYGspsspllsappqkllDRDGFCDSGTGLCDAK
Disordered region (IsUnstruct)
************************YQLHALSKPLWVACQIS**********DCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRANF************SKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGV************************************************
Disordered Region (DISOPRED)
*A*SSISPLSIKSL*********************************G****CSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRR******************LDRDGFCDSGTGLCD**
Disordered Region (DISEMBL)
MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISS********PDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK
Disordered Region (DISPRO)
****************************ALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGT****************S*********SPLLSAPPQKLLDRDGFCDSGT*LC***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	281	2.2.26 [Sep-21-2011]
Q8H1Q1	280	Thylakoid lumenal protein	yes	no	0.982	0.985	0.712	3e-99
O22160	224	Thylakoid lumenal 15 kDa	no	no	0.387	0.486	0.375	3e-09
Q55837	166	Uncharacterized protein s	N/A	no	0.277	0.469	0.385	6e-06
P81760	236	Thylakoid lumenal 17.4 kD	no	no	0.373	0.444	0.290	1e-05
Q52118	295	Uncharacterized protein i	N/A	no	0.352	0.335	0.342	1e-05

>sp|Q8H1Q1|TL225_ARATH Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis thaliana GN=At1g12250 PE=1 SV=1

 Score =  361 bits (927), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 203/285 (71%), Positives = 230/285 (80%), Gaps = 9/285 (3%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQ--- 57
           MA SS+SPL +KSL+   SSS      +   + L    Q+SS+  S+ +  D SN +   
Sbjct: 1   MAFSSLSPLPMKSLDISRSSSSVSRSPYHFQRYLLRRLQLSSR--SNLEIKDSSNTREGC 58

Query: 58  CAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSAD 117
           C+   A+   W+  +S A+AAAV+AS SS + A+A+LN++EA+TRGEFGIGSAAQ+GSAD
Sbjct: 59  CSS--AESNTWKRILSAAMAAAVIAS-SSGVPAMAELNRFEADTRGEFGIGSAAQYGSAD 115

Query: 118 LRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV 176
           L K VH  ENFR ANFTSADMRESDFSGS FNGAYLEKAVAYKANF+GADLSDTLMDRMV
Sbjct: 116 LSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMV 175

Query: 177 LNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTR 236
           LNEANLTNAVLVR+VLTRSDLGGA IEGADFSDAVIDL QKQALCKYA GTNP+TGV TR
Sbjct: 176 LNEANLTNAVLVRSVLTRSDLGGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTR 235

Query: 237 KSLGCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 281
           KSLGCGNSRRNAYGSPSSPLLSAPPQ+LL RDGFCD  TGLCD K
Sbjct: 236 KSLGCGNSRRNAYGSPSSPLLSAPPQRLLGRDGFCDEKTGLCDVK 280

Arabidopsis thaliana (taxid: 3702)

>sp|O22160|TL15A_ARATH Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana GN=At2g44920 PE=1 SV=2

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 11/120 (9%)

Query: 128 FRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM---DRMVLN--EANL 182
            R +F ++ +R+++F G+K  GA       + A+ TGADLS+  +   D  + N  + NL
Sbjct: 109 IRQDFKTSILRQANFKGAKLLGASF-----FDADLTGADLSEADLRGADFSLANVTKVNL 163

Query: 183 TNAVLV-RTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGC 241
           TNA L   TV   +   G+ I GADF+D  +   Q+  LCK A+G N  TG +TR +L C
Sbjct: 164 TNANLEGATVTGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLC 223

Arabidopsis thaliana (taxid: 3702)

>sp|Q55837|Y516_SYNY3 Uncharacterized protein slr0516 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0516 PE=4 SV=1

 Score = 51.6 bits (122), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 5/83 (6%)

Query: 131 NFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEAN-----LTNA 185
           N  +A +  SD SG+  +G  L +A+  +AN TGA+LS+T +    L EAN     L+ A
Sbjct: 54  NLENARLNRSDLSGANLSGVNLRRALLDRANLTGANLSETDLTEAALTEANLAGADLSGA 113

Query: 186 VLVRTVLTRSDLGGAIIEGADFS 208
            L R+ L   DL GA ++GA+ +
Sbjct: 114 NLERSFLRDVDLTGANLKGANLA 136

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P81760|TL17_ARATH Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At5g53490 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 5/110 (4%)

Query: 132 FTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTV 191
            ++A M  + F G+      + KA A +A+F G + ++ ++DR+   ++NL  AV   TV
Sbjct: 131 LSAALMVGAKFDGADMTEVVMSKAYAVEASFKGVNFTNAVIDRVNFGKSNLKGAVFRNTV 190

Query: 192 LTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGC 241
           L+ S    A +E   F D +I     Q +C+     N       R  LGC
Sbjct: 191 LSGSTFEEANLEDVVFEDTIIGYIDLQKICR-----NESINEEGRLVLGC 235

Arabidopsis thaliana (taxid: 3702)

>sp|Q52118|YMO3_ERWST Uncharacterized protein in mobD 3'region OS=Erwinia stewartii PE=4 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 61/105 (58%), Gaps = 6/105 (5%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKA---VAY--KANF 162
           S A   +ADL++A     N   A+ T+A++ ++D      +GA L  A   +AY  +A+ 
Sbjct: 170 SNANLSNADLKRADLSNANLSGADLTNANLNQTDLPNVNLSGANLAHANLTMAYLSEADL 229

Query: 163 TGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADF 207
           + A+LS+  + R  L++ANL++A L    L R+DL  AI++GA+ 
Sbjct: 230 SNANLSNADLKRADLSDANLSDANLTNVDLKRADLSNAILKGANL 274

Erwinia stewartii (taxid: 66271)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
255583634	280	conserved hypothetical protein [Ricinus	0.992	0.996	0.790	1e-119
224071571	275	predicted protein [Populus trichocarpa]	0.975	0.996	0.758	1e-115
297741150	261	unnamed protein product [Vitis vinifera]	0.925	0.996	0.769	1e-111
359474379	596	PREDICTED: uncharacterized protein LOC10	0.925	0.436	0.769	1e-110
449459702	279	PREDICTED: thylakoid lumenal protein At1	0.982	0.989	0.729	1e-109
388505216	273	unknown [Lotus japonicus]	0.932	0.959	0.721	1e-105
356540500	260	PREDICTED: thylakoid lumenal protein At1	0.921	0.996	0.730	1e-104
357481963	262	Thylakoid lumenal protein [Medicago trun	0.928	0.996	0.702	1e-101
357481965	232	Thylakoid lumenal protein [Medicago trun	0.765	0.926	0.843	1e-100
116785652	291	unknown [Picea sitchensis]	0.836	0.807	0.768	1e-100

>gi|255583634|ref|XP_002532572.1| conserved hypothetical protein [Ricinus communis] gi|223527699|gb|EEF29806.1| conserved hypothetical protein [Ricinus communis]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/282 (79%), Positives = 239/282 (84%), Gaps = 3/282 (1%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MA +SISPLSIKS+N   SSS+ PY L + SKP  + CQ++  TE + +  DCS  +   
Sbjct: 1   MAFTSISPLSIKSVNISPSSSRSPYHLPSQSKPFHILCQLA--TEREDRILDCSTTRYKV 58

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
            ++K KNWR  VSTALAAA   +    + A ADLNK+EAE RGEFGIGSAAQFGSADLRK
Sbjct: 59  HHSKPKNWRTLVSTALAAAAAVNLGFGLPAAADLNKFEAELRGEFGIGSAAQFGSADLRK 118

Query: 121 AVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 179
           AVHV ENFR ANFTSADMRESDFSGS FNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE
Sbjct: 119 AVHVNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 178

Query: 180 ANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSL 239
           ANLTNAVLVR+VLTRSDLGGAIIEGADFSDAVIDL QKQALCKYANGTN ITGVSTRKSL
Sbjct: 179 ANLTNAVLVRSVLTRSDLGGAIIEGADFSDAVIDLTQKQALCKYANGTNSITGVSTRKSL 238

Query: 240 GCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 281
           GCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCD  TGLCDAK
Sbjct: 239 GCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDEATGLCDAK 280

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071571|ref|XP_002303521.1| predicted protein [Populus trichocarpa] gi|222840953|gb|EEE78500.1| predicted protein [Populus trichocarpa]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/282 (75%), Positives = 236/282 (83%), Gaps = 8/282 (2%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MA +SIS +SIKS N  +     P+++ +LSKP  +A Q+   TE   QF DCS N    
Sbjct: 1   MAFTSISSMSIKSPNIST-----PHRILSLSKPFRIAYQL--DTERGNQFADCSKNGYEV 53

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
             AK KNW   VST L AA ++  S N+ A+ADLN++EAETRGEFGIGSAAQFGSADLRK
Sbjct: 54  ETAKAKNWARVVSTTLVAAAISFSSCNLPAVADLNRFEAETRGEFGIGSAAQFGSADLRK 113

Query: 121 AVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 179
           AVH+ ENFR ANFT+ADMRESDFSGS FNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE
Sbjct: 114 AVHLNENFRRANFTAADMRESDFSGSTFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 173

Query: 180 ANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSL 239
           +NLTNAVLVR+VLTRSDLGGA+I GADFSDAVIDL QKQALCKYA+GTNPITGVSTR SL
Sbjct: 174 SNLTNAVLVRSVLTRSDLGGALIAGADFSDAVIDLPQKQALCKYASGTNPITGVSTRASL 233

Query: 240 GCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 281
           GCGNSRRNAYG+PSSPLLSAPPQKLLDRDGFCD GTGLCDAK
Sbjct: 234 GCGNSRRNAYGTPSSPLLSAPPQKLLDRDGFCDQGTGLCDAK 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741150|emb|CBI31881.3| unnamed protein product [Vitis vinifera]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/282 (76%), Positives = 230/282 (81%), Gaps = 22/282 (7%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MALSS+SPL I         SK P  L + SKP  V C+I  +    G +  C  N    
Sbjct: 1   MALSSVSPLYI---------SKSPNHLQSPSKPFTVVCRIELQR---GNY--CRAN---- 42

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
             A+ K W+  VSTALAAAVV + S  + A+ADLNKYEAETRGEFGIGSAAQFGSADLRK
Sbjct: 43  --AESKKWQRLVSTALAAAVV-TLSPVMPAVADLNKYEAETRGEFGIGSAAQFGSADLRK 99

Query: 121 AVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 179
           AVHV ENFR ANFTSADMRESDFSGS FNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE
Sbjct: 100 AVHVNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 159

Query: 180 ANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSL 239
           ANLTNAVL RTVLTRSDLGGA+IEGADFSDAVIDL QKQALCKYA+GTNPITGVSTR SL
Sbjct: 160 ANLTNAVLARTVLTRSDLGGAVIEGADFSDAVIDLPQKQALCKYASGTNPITGVSTRASL 219

Query: 240 GCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 281
           GCGNSRR+AYGSPSSPLLSAPP KLLDRDGFCD GTGLCDAK
Sbjct: 220 GCGNSRRSAYGSPSSPLLSAPPPKLLDRDGFCDEGTGLCDAK 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474379|ref|XP_002265958.2| PREDICTED: uncharacterized protein LOC100250522 isoform 2 [Vitis vinifera]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/282 (76%), Positives = 230/282 (81%), Gaps = 22/282 (7%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MALSS+SPL I         SK P  L + SKP  V C+I  +    G +  C  N    
Sbjct: 336 MALSSVSPLYI---------SKSPNHLQSPSKPFTVVCRIELQR---GNY--CRAN---- 377

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
             A+ K W+  VSTALAAAVV + S  + A+ADLNKYEAETRGEFGIGSAAQFGSADLRK
Sbjct: 378 --AESKKWQRLVSTALAAAVV-TLSPVMPAVADLNKYEAETRGEFGIGSAAQFGSADLRK 434

Query: 121 AVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 179
           AVHV ENFR ANFTSADMRESDFSGS FNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE
Sbjct: 435 AVHVNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 494

Query: 180 ANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSL 239
           ANLTNAVL RTVLTRSDLGGA+IEGADFSDAVIDL QKQALCKYA+GTNPITGVSTR SL
Sbjct: 495 ANLTNAVLARTVLTRSDLGGAVIEGADFSDAVIDLPQKQALCKYASGTNPITGVSTRASL 554

Query: 240 GCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 281
           GCGNSRR+AYGSPSSPLLSAPP KLLDRDGFCD GTGLCDAK
Sbjct: 555 GCGNSRRSAYGSPSSPLLSAPPPKLLDRDGFCDEGTGLCDAK 596

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459702|ref|XP_004147585.1| PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic-like [Cucumis sativus] gi|449520611|ref|XP_004167327.1| PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic-like [Cucumis sativus]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/281 (72%), Positives = 229/281 (81%), Gaps = 5/281 (1%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MALSSIS LS+K L   SS S+ P  L    K + +  QI+ + +   Q  DCS  +  G
Sbjct: 1   MALSSISSLSVKCLPLNSSKSRHPCSLQT-RKQISMVSQINPQKD---QTQDCSERKHIG 56

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
              + K W+  VSTALAAA V   SS + ++A+LNKYEA+TRGEFGIGSAAQ+GSADLRK
Sbjct: 57  KITEPKRWQKLVSTALAAAAVIGFSSGMPSVAELNKYEADTRGEFGIGSAAQYGSADLRK 116

Query: 121 AVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 179
           AVH+ ENFR ANFTSADMRESDFSG  FNGAYLEKAVAYK NF+GADLSDTLMDRMVLNE
Sbjct: 117 AVHINENFRRANFTSADMRESDFSGCTFNGAYLEKAVAYKTNFSGADLSDTLMDRMVLNE 176

Query: 180 ANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSL 239
           AN TNAVLVR+VLTRSDLGGAII GADFSDAVIDL QKQALCKYA+GTNP+TGVSTR SL
Sbjct: 177 ANFTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASL 236

Query: 240 GCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDA 280
           GCGNSRRNAYG+PSSPLLSAPPQ+LLDRDGFCD  TGLC+A
Sbjct: 237 GCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQDTGLCEA 277

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505216|gb|AFK40674.1| unknown [Lotus japonicus]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/287 (72%), Positives = 230/287 (80%), Gaps = 25/287 (8%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQL------HALSKPLWVACQISSKTESDGQFPDCS 54
           MAL+S+SPLSI ++N    SS+   +L      H  S P+ V CQ++S  +     P  S
Sbjct: 2   MALNSLSPLSI-NINSLHVSSRPTSELSNSLHFHPKSSPI-VLCQMNSNRD----HPQES 55

Query: 55  NNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFG 114
                      K W   VS  LAAAV+A  SS++SALADLNK+EAE RGEFGIGSAAQFG
Sbjct: 56  -----------KKWGKLVSATLAAAVIA-FSSDMSALADLNKFEAEIRGEFGIGSAAQFG 103

Query: 115 SADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMD 173
           SADLRKAVHV ENFR ANFTSADMRESDFSGS FNGAYLEKAVAYKANF+GADLSDTLMD
Sbjct: 104 SADLRKAVHVNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMD 163

Query: 174 RMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGV 233
           RMVLNEANLTNA+LVRTVLTRSDLGG+IIEGADFSDAV+DL QK ALCKYA+GTNP+TGV
Sbjct: 164 RMVLNEANLTNAILVRTVLTRSDLGGSIIEGADFSDAVLDLTQKLALCKYASGTNPVTGV 223

Query: 234 STRKSLGCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDA 280
           STR SLGCGN RRNAYG+PSSPLLSAPPQKLL+RDGFCD  TGLCD+
Sbjct: 224 STRVSLGCGNKRRNAYGTPSSPLLSAPPQKLLNRDGFCDEATGLCDS 270

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540500|ref|XP_003538726.1| PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic-like [Glycine max]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/282 (73%), Positives = 227/282 (80%), Gaps = 23/282 (8%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MAL+S+SPLSI SL+  SSS+      H+ S P+ V    ++++                
Sbjct: 1   MALNSLSPLSINSLHVSSSSTSKISHSHSKSFPVVVKSVANAES---------------- 44

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
                  W   VS  LAAAV+A  SS++SALADLNK+EAE RGEFGIGSAAQFGSADLRK
Sbjct: 45  -----TKWGKVVSATLAAAVIA-FSSDMSALADLNKFEAEMRGEFGIGSAAQFGSADLRK 98

Query: 121 AVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 179
           AVHV ENFR ANFT+ADMRESDFSGS FNGAYLEKAVAYKANF+GADLSDTLMDRMVLNE
Sbjct: 99  AVHVNENFRRANFTAADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNE 158

Query: 180 ANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSL 239
           ANLTNA+L+RTVLTRSDLGGAIIEGADFSDAV+DL QKQALCKYA+GTNP+TGVSTR SL
Sbjct: 159 ANLTNAILLRTVLTRSDLGGAIIEGADFSDAVLDLPQKQALCKYASGTNPVTGVSTRVSL 218

Query: 240 GCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 281
           GCGN RRNAYGSPSSPLLSAPPQKLLDRDGFCD  TGLCDAK
Sbjct: 219 GCGNKRRNAYGSPSSPLLSAPPQKLLDRDGFCDDATGLCDAK 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481963|ref|XP_003611267.1| Thylakoid lumenal protein [Medicago truncatula] gi|355512602|gb|AES94225.1| Thylakoid lumenal protein [Medicago truncatula]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/282 (70%), Positives = 220/282 (78%), Gaps = 21/282 (7%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MAL+S +PLSI S +            +  S  +  + Q+  K   +   P  SN     
Sbjct: 1   MALNSFTPLSINSHH---------VSCYPSSSKVSKSSQVICKMSLNNDHPQESN----- 46

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
                KNW   VS  LAAAV+   SS++SALADLNK+EAE RGEFGIGSAAQFGSADL+K
Sbjct: 47  -----KNWGKLVSATLAAAVIV-FSSDMSALADLNKFEAEVRGEFGIGSAAQFGSADLKK 100

Query: 121 AVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 179
            VHV ENFR ANFTSADMRESDFSGS FNGAY+EKAVA+KANFTGADLSDTLMDRMVLNE
Sbjct: 101 TVHVNENFRRANFTSADMRESDFSGSTFNGAYMEKAVAFKANFTGADLSDTLMDRMVLNE 160

Query: 180 ANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSL 239
           ANLTNA+L RTVLTRSDLGGAIIEGADFSDAV+DL QK ALCKYA+GTNP+TGVSTR SL
Sbjct: 161 ANLTNAILSRTVLTRSDLGGAIIEGADFSDAVLDLPQKLALCKYASGTNPVTGVSTRVSL 220

Query: 240 GCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 281
           GCGN RRNAYG+PSSPLLSAPPQKLLDRDGFCD  +GLCD+K
Sbjct: 221 GCGNKRRNAYGTPSSPLLSAPPQKLLDRDGFCDEASGLCDSK 262

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481965|ref|XP_003611268.1| Thylakoid lumenal protein [Medicago truncatula] gi|355512603|gb|AES94226.1| Thylakoid lumenal protein [Medicago truncatula]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/217 (84%), Positives = 197/217 (90%), Gaps = 2/217 (0%)

Query: 66  KNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVK 125
           KNW   VS  LAAAV+   SS++SALADLNK+EAE RGEFGIGSAAQFGSADL+K VHV 
Sbjct: 17  KNWGKLVSATLAAAVIV-FSSDMSALADLNKFEAEVRGEFGIGSAAQFGSADLKKTVHVN 75

Query: 126 ENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTN 184
           ENFR ANFTSADMRESDFSGS FNGAY+EKAVA+KANFTGADLSDTLMDRMVLNEANLTN
Sbjct: 76  ENFRRANFTSADMRESDFSGSTFNGAYMEKAVAFKANFTGADLSDTLMDRMVLNEANLTN 135

Query: 185 AVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNS 244
           A+L RTVLTRSDLGGAIIEGADFSDAV+DL QK ALCKYA+GTNP+TGVSTR SLGCGN 
Sbjct: 136 AILSRTVLTRSDLGGAIIEGADFSDAVLDLPQKLALCKYASGTNPVTGVSTRVSLGCGNK 195

Query: 245 RRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 281
           RRNAYG+PSSPLLSAPPQKLLDRDGFCD  +GLCD+K
Sbjct: 196 RRNAYGTPSSPLLSAPPQKLLDRDGFCDEASGLCDSK 232

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116785652|gb|ABK23807.1| unknown [Picea sitchensis]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/242 (76%), Positives = 205/242 (84%), Gaps = 7/242 (2%)

Query: 40  ISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEA 99
           I+ K  +D    D    Q A    + KNW+  ++ ALA  V+ +    ++A ADLNKYEA
Sbjct: 52  ITGKISTDQHKKDA---QPASATPESKNWQRCLAAALATIVIGT---GMNAEADLNKYEA 105

Query: 100 ETRGEFGIGSAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAY 158
           ETRGEFGIGSAAQFGSA+LRK VH  ENFR ANFTSAD+RESDFSGS FNGAYLEKAVAY
Sbjct: 106 ETRGEFGIGSAAQFGSAELRKTVHANENFRRANFTSADIRESDFSGSTFNGAYLEKAVAY 165

Query: 159 KANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQ 218
           K NFTGADLSDTLMDRMVLNEANLTNAVLVR+VLTRSDLGGAIIEGADFSDAVID  QKQ
Sbjct: 166 KTNFTGADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIEGADFSDAVIDFTQKQ 225

Query: 219 ALCKYANGTNPITGVSTRKSLGCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLC 278
           ALCKYA+GTNPITG+STRKSLGCGNSRRNAYG+PS+PLLSAPP+KLLD+DGFCDS TGLC
Sbjct: 226 ALCKYASGTNPITGISTRKSLGCGNSRRNAYGTPSAPLLSAPPEKLLDKDGFCDSSTGLC 285

Query: 279 DA 280
           DA
Sbjct: 286 DA 287

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
TAIR|locus:2202033	280	AT1G12250 "AT1G12250" [Arabido	0.914	0.917	0.640	4.2e-79
TAIR|locus:2055023	224	AT2G44920 "AT2G44920" [Arabido	0.384	0.482	0.378	1.1e-10
UNIPROTKB|Q0BZZ2	245	HNE_2256 "Pentapeptide repeat	0.341	0.391	0.383	5.9e-06
UNIPROTKB|Q74B06	254	GSU2404 "Pentapeptide repeat d	0.359	0.397	0.358	1.5e-05
TIGR_CMR|GSU_2404	254	GSU_2404 "pentapeptide repeat	0.359	0.397	0.358	1.5e-05

TAIR|locus:2202033 AT1G12250 "AT1G12250" [Arabidopsis thaliana (taxid:3702)]

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 171/267 (64%), Positives = 189/267 (70%)

Query:    18 SSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQ--CAGPYAKLKNWRXXXXXX 75
             SS S+ PY  H   + L    Q+SS+  S+ +  D SN +  C    A+   W+      
Sbjct:    21 SSVSRSPY--H-FQRYLLRRLQLSSR--SNLEIKDSSNTREGCCSS-AESNTWKRILSAA 74

Query:    76 XXXXXXXXXXXXXXXLADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFR-ANFTS 134
                            +A+LN++EA+TRGEFGIGSAAQ+GSADL K VH  ENFR ANFTS
Sbjct:    75 MAAAVIASSSGVPA-MAELNRFEADTRGEFGIGSAAQYGSADLSKTVHSNENFRRANFTS 133

Query:   135 ADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTR 194
             ADMRESDFSGS FNGAYLEKAVAYKANF+GADLSDTLMDRMVLNEANLTNAVLVR+VLTR
Sbjct:   134 ADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTR 193

Query:   195 SDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRNAYGXXXX 254
             SDLGGA IEGADFSDAVIDL QKQALCKYA GTNP+TGV TRKSLGCGNSRRNAYG    
Sbjct:   194 SDLGGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLGCGNSRRNAYGSPSS 253

Query:   255 XXXXXXXXXXXDRDGFCDSGTGLCDAK 281
                         RDGFCD  TGLCD K
Sbjct:   254 PLLSAPPQRLLGRDGFCDEKTGLCDVK 280

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2055023 AT2G44920 "AT2G44920" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 45/119 (37%), Positives = 67/119 (56%)

Query:   129 RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM---DRMVLN--EANLT 183
             R +F ++ +R+++F G+K  GA       + A+ TGADLS+  +   D  + N  + NLT
Sbjct:   110 RQDFKTSILRQANFKGAKLLGASF-----FDADLTGADLSEADLRGADFSLANVTKVNLT 164

Query:   184 NAVLV-RTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGC 241
             NA L   TV   +   G+ I GADF+D  +   Q+  LCK A+G N  TG +TR +L C
Sbjct:   165 NANLEGATVTGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLC 223

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|Q0BZZ2 HNE_2256 "Pentapeptide repeat domain protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 125 (49.1 bits), Expect = 5.9e-06, P = 5.9e-06
 Identities = 41/107 (38%), Positives = 56/107 (52%)

Query:   110 AAQFGSADLRKAVHVKENFR-ANFTSADMRE-----SDFSGSKFNGAYLEKAVAYKANFT 163
             +A    ADLR A      F  A F +A M++     +DFS ++  GA LEKA     NF 
Sbjct:    82 SANVTGADLRGADLTSARFADATFNNARMQDVLASGADFSRARLQGANLEKARLIGVNFE 141

Query:   164 GADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
             GA L   L  R  L  A+L+ A    T+L R++L G I +GA+ S+A
Sbjct:   142 GASL---LFAR--LETADLSGANCTGTILDRANLRGTIFDGANLSEA 183

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74B06 GSU2404 "Pentapeptide repeat domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 122 (48.0 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 38/106 (35%), Positives = 57/106 (53%)

Query:   111 AQFGSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT 170
             A    AD+RK V+V+   + NF+ A++  ++FSG+K   A L  AV    NF+ ADLS T
Sbjct:   122 ANLSGADMRK-VNVE---KGNFSQANLTNANFSGAKLKYANLGGAVLRGTNFSFADLSAT 177

Query:   171 LMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADF-SDAVIDLA 215
              +  + L  AN   A    T+L  + L GA +  + F S ++ D A
Sbjct:   178 DLGSLDLEGANFRGATFNGTLLRDAKLKGADLRQSRFHSVSIYDTA 223

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2404 GSU_2404 "pentapeptide repeat domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 122 (48.0 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 38/106 (35%), Positives = 57/106 (53%)

Query:   111 AQFGSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT 170
             A    AD+RK V+V+   + NF+ A++  ++FSG+K   A L  AV    NF+ ADLS T
Sbjct:   122 ANLSGADMRK-VNVE---KGNFSQANLTNANFSGAKLKYANLGGAVLRGTNFSFADLSAT 177

Query:   171 LMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADF-SDAVIDLA 215
              +  + L  AN   A    T+L  + L GA +  + F S ++ D A
Sbjct:   178 DLGSLDLEGANFRGATFNGTLLRDAKLKGADLRQSRFHSVSIYDTA 223

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H1Q1	TL225_ARATH	No assigned EC number	0.7122	0.9822	0.9857	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00030850	hypothetical protein (275 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_VII0722	photosystem II stability/assembly factor (394 aa)				•			•		0.423

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	281
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	3e-13
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	7e-12
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	7e-12
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	9e-11
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	1e-06
pfam13599	77	pfam13599, Pentapeptide_4, Pentapeptide repeats (9	1e-05
pfam13599	77	pfam13599, Pentapeptide_4, Pentapeptide repeats (9	2e-05
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	3e-05
pfam13599	77	pfam13599, Pentapeptide_4, Pentapeptide repeats (9	6e-05
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	7e-05
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	1e-04
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	1e-04
PRK15196	350	PRK15196, PRK15196, secreted effector protein PipB	1e-04
PRK15197	291	PRK15197, PRK15197, secreted effector protein PipB	1e-04
PRK15196	350	PRK15196, PRK15196, secreted effector protein PipB	2e-04
PRK15197	291	PRK15197, PRK15197, secreted effector protein PipB	2e-04
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	3e-04

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 67.2 bits (164), Expect = 3e-13
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 1/112 (0%)

Query: 107 IGSAAQFGSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD 166
               A    A+L  A     N   N T A++  +D SG+  + A L  A    AN  GA+
Sbjct: 86  DLEGANLRGANLSGANLSGANLS-NATRANLSGADLSGANLSNANLTGANLSGANLNGAN 144

Query: 167 LSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQ 218
           LS+  +    L+ A+L+ A L    L+ +DL GA + GA+ S A +  A   
Sbjct: 145 LSNANLSGADLSGADLSGADLSGANLSGADLRGANLSGANLSGADLRNANLS 196

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 63.4 bits (154), Expect = 7e-12
 Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 10/127 (7%)

Query: 105 FGIGSAAQFGSADLRKAVHVKENF-RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFT 163
               + A    ADL  A     N   AN T A++  ++ +G+  + A L  A    A+ +
Sbjct: 107 LSNATRANLSGADLSGA-----NLSNANLTGANLSGANLNGANLSNANLSGADLSGADLS 161

Query: 164 GADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKY 223
           GADLS   +    L  ANL+ A L    L  ++L GA + GAD + A        A    
Sbjct: 162 GADLSGANLSGADLRGANLSGANLSGADLRNANLSGADLSGADLTGA----NLVNANLGG 217

Query: 224 ANGTNPI 230
           AN     
Sbjct: 218 ANLFGAN 224

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 63.4 bits (154), Expect = 7e-12
 Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 1/106 (0%)

Query: 111 AQFGSADLRKAVHVKENF-RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 169
           A    A+L  A     N   AN + AD+  +D SG+  +GA L  A    AN +GA+LS 
Sbjct: 128 ANLTGANLSGANLNGANLSNANLSGADLSGADLSGADLSGANLSGADLRGANLSGANLSG 187

Query: 170 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLA 215
             +    L+ A+L+ A L    L  ++LGGA + GA+   A +  A
Sbjct: 188 ADLRNANLSGADLSGADLTGANLVNANLGGANLFGANLLGADLSGA 233

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 60.3 bits (146), Expect = 9e-11
 Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 4/110 (3%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMR-ESDFSGSKFNGAYLEKAVAYKANFTGAD 166
             A     DL  A     +   AN   AD+   +D SG+   GA L  A    AN +GA+
Sbjct: 47  ENANLSGLDLSGANLSGADLSNANLRGADLSKGADLSGADLEGANLRGANLSGANLSGAN 106

Query: 167 LSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 216
           LS+       L+ A+L+ A L    LT ++L GA + GA+ S+A +  A 
Sbjct: 107 LSNATRA--NLSGADLSGANLSNANLTGANLSGANLNGANLSNANLSGAD 154

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 11/103 (10%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
           + A   +A+L  A     +   A+ + A++  +D  G+  +GA L  A    AN +GADL
Sbjct: 141 NGANLSNANLSGADLSGADLSGADLSGANLSGADLRGANLSGANLSGADLRNANLSGADL 200

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
           S           A+LT A LV   L  ++L GA + GAD S A
Sbjct: 201 S----------GADLTGANLVNANLGGANLFGANLLGADLSGA 233

Length = 238

>gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 10/69 (14%), Positives = 24/69 (34%)

Query: 140 SDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGG 199
           +DF    F    L+      A     + S+  +  +  ++ +L +       L  +    
Sbjct: 1   ADFRNCSFENCDLKNVNFSNATLKNCNFSNCKLFNVNFSDCDLRDVDFTEADLKNAKFSN 60

Query: 200 AIIEGADFS 208
             ++  +FS
Sbjct: 61  CDLKNVNFS 69

Length = 77

>gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 1/78 (1%)

Query: 130 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR 189
           A+F +      D     F+ A L+            + SD  +  +   EA+L NA    
Sbjct: 1   ADFRNCSFENCDLKNVNFSNATLKNCNFSNCKLFNVNFSDCDLRDVDFTEADLKNAKFSN 60

Query: 190 TVLTRSDLGGAIIEGADF 207
             L   +  G  ++  DF
Sbjct: 61  CDLKNVNFSG-SLKDCDF 77

Length = 77

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 40.1 bits (95), Expect = 3e-05
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 10/50 (20%)

Query: 160 ANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSD 209
           AN +GA+L            A+L  A L    LT ++L GA + GA+ S 
Sbjct: 1   ANLSGANLR----------GADLRGADLSGADLTGANLSGANLSGANLSG 40

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 16/79 (20%), Positives = 22/79 (27%), Gaps = 10/79 (12%)

Query: 135 ADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTR 194
           AD R   F                  NF+ A L +       L   N ++  L     T 
Sbjct: 1   ADFRNCSFENCDLKNV----------NFSNATLKNCNFSNCKLFNVNFSDCDLRDVDFTE 50

Query: 195 SDLGGAIIEGADFSDAVID 213
           +DL  A     D  +    
Sbjct: 51  ADLKNAKFSNCDLKNVNFS 69

Length = 77

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 38.9 bits (92), Expect = 7e-05
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 177 LNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
           L+ ANL  A L    L+ +DL GA + GA+ S A
Sbjct: 3   LSGANLRGADLRGADLSGADLTGANLSGANLSGA 36

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 38.1 bits (90), Expect = 1e-04
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 135 ADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDR 174
           A++  ++  G+   GA L  A    AN +GA+LS   +  
Sbjct: 1   ANLSGANLRGADLRGADLSGADLTGANLSGANLSGANLSG 40

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 38.1 bits (90), Expect = 1e-04
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 130 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 169
           AN + A++R +D  G+  +GA L  A    AN +GA+LS 
Sbjct: 1   ANLSGANLRGADLRGADLSGADLTGANLSGANLSGANLSG 40

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|185118 PRK15196, PRK15196, secreted effector protein PipB2; Provisional

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 30/113 (26%)

Query: 130 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS---------------DTLMDR 174
           AN T+ ++ ++D SG+   GA L  A    ANF GA+LS               D++M  
Sbjct: 162 ANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDSIMCG 221

Query: 175 MVLNEANLTNAVLVRTVL---------------TRSDLGGAIIEGADFSDAVI 212
             L+ ANLT A L    L                 ++L GA +  AD S A +
Sbjct: 222 ATLDHANLTGANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATL 274

Length = 350

>gnl|CDD|185119 PRK15197, PRK15197, secreted effector protein PipB; Provisional

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 22/79 (27%), Positives = 37/79 (46%)

Query: 131 NFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRT 190
           +F   D+ + D S + F    L       AN   A+L    +    + +ANLT+A L   
Sbjct: 165 DFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCA 224

Query: 191 VLTRSDLGGAIIEGADFSD 209
            ++  +L  AI+ G+D +D
Sbjct: 225 NMSGVNLTAAILFGSDLTD 243

Length = 291

>gnl|CDD|185118 PRK15196, PRK15196, secreted effector protein PipB2; Provisional

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 129 RANFTSADMRESDFSG-----SKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLT 183
            AN T A+++ +   G        +GA ++      A    AD+S   +    +  A + 
Sbjct: 226 HANLTGANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIME 285

Query: 184 NAVLVRTVLTRSDLGGAIIEGADFSDA 210
            AVL R  L ++      ++GAD ++A
Sbjct: 286 GAVLTRANLRKASFISTNLDGADLAEA 312

Length = 350

>gnl|CDD|185119 PRK15197, PRK15197, secreted effector protein PipB; Provisional

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 20/81 (24%), Positives = 36/81 (44%)

Query: 130 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR 189
           A+F    +   +  G+    A L       +N T A+L+   +    ++  NLT A+L  
Sbjct: 179 ADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFG 238

Query: 190 TVLTRSDLGGAIIEGADFSDA 210
           + LT + L GA ++    + A
Sbjct: 239 SDLTDTKLNGAKLDKIALTLA 259

Length = 291

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
           S A    A+L  A     N   AN + AD+R ++ SG+  +GA L  A    AN  GA+L
Sbjct: 161 SGADLSGANLSGADLRGANLSGANLSGADLRNANLSGADLSGADLTGANLVNANLGGANL 220

Query: 168 SDTLMDRMVLNEANLTNA 185
               +    L+ A L + 
Sbjct: 221 FGANLLGADLSGATLGDV 238

Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	281
PRK15197	291	secreted effector protein PipB; Provisional	99.68
PRK15197	291	secreted effector protein PipB; Provisional	99.67
PRK15377	782	E3 ubiquitin-protein ligase SopA; Provisional	99.59
PRK15196	350	secreted effector protein PipB2; Provisional	99.58
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	99.56
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	99.56
PRK09718	512	hypothetical protein; Validated	99.51
PRK15377	782	E3 ubiquitin-protein ligase SopA; Provisional	99.5
PRK09718	512	hypothetical protein; Validated	99.49
PF13599	78	Pentapeptide_4: Pentapeptide repeats (9 copies); P	99.31
PF13599	78	Pentapeptide_4: Pentapeptide repeats (9 copies); P	99.3

>PRK15197 secreted effector protein PipB; Provisional

Probab=99.68  E-value=1e-17  Score=155.50  Aligned_cols=108  Identities=20%  Similarity=0.268  Sum_probs=60.4

Q ss_pred             CCceEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccceecceeeccccccccee
Q 023545          109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVL  187 (281)
Q Consensus       109 sg~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~~A~L  187 (281)
                      .+++|.+++|++.+|.+++|. ++|++++|++++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|.+|.|
T Consensus       157 ~g~DLs~adL~gadLsgadLs~A~F~gAnL~~a~LsgA~L~~AnL~~A~f~~a~f~~Anf~~AdL~~A~Ls~A~L~gA~L  236 (291)
T PRK15197        157 RGVNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAIL  236 (291)
T ss_pred             CCCCCCCCCCCCCcCCCCcccCccccccCcCCccccccccCCcEecccchhhhhhhhceeccCcCceeecCccCcCCCEe
Confidence            455555555555555555555 5555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCccccceeecCceecCccccCc-eeCHHH
Q 023545          188 VRTVLTRSDLGGAIIEGADFSDA-VIDLAQ  216 (281)
Q Consensus       188 ~~a~f~~adL~gA~l~gAdf~~A-~l~~~q  216 (281)
                      .+++|++++|.+++|.+++|.++ .|.+.+
T Consensus       237 ~gAdLs~A~L~gAnL~~A~L~~a~~L~gad  266 (291)
T PRK15197        237 FGSDLTDTKLNGAKLDKIALTLAKALTGAD  266 (291)
T ss_pred             CCCCcCCCCCCCCCCCccccccCCCCCCCc
Confidence            55555555555555555555555 444443

>PRK15197 secreted effector protein PipB; Provisional

Probab=99.67  E-value=1.8e-17  Score=153.84  Aligned_cols=95  Identities=22%  Similarity=0.260  Sum_probs=36.5

Q ss_pred             CceEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccceecceeecccccccceec
Q 023545          110 AAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV  188 (281)
Q Consensus       110 g~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~~A~L~  188 (281)
                      +++|.+++|++++|.+++|+ ++|++++|.+++|.+++|.+++|.+++|.+++|.+++|++++|.+++|.+|+|.+++|.
T Consensus       163 ~adL~gadLsgadLs~A~F~gAnL~~a~LsgA~L~~AnL~~A~f~~a~f~~Anf~~AdL~~A~Ls~A~L~gA~L~gAdLs  242 (291)
T PRK15197        163 HKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFGSDLT  242 (291)
T ss_pred             CCCCCCCcCCCCcccCccccccCcCCccccccccCCcEecccchhhhhhhhceeccCcCceeecCccCcCCCEeCCCCcC
Confidence            33444444444444444444 44444444443333333333333333333333333333333333333333333333333


Q ss_pred             CccccceeecCceecC
Q 023545          189 RTVLTRSDLGGAIIEG  204 (281)
Q Consensus       189 ~a~f~~adL~gA~l~g  204 (281)
                      +++|.+++|.+++|.+
T Consensus       243 ~A~L~gAnL~~A~L~~  258 (291)
T PRK15197        243 DTKLNGAKLDKIALTL  258 (291)
T ss_pred             CCCCCCCCCCcccccc
Confidence            3333333333333333

>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional

Probab=99.59  E-value=1.1e-15  Score=155.26  Aligned_cols=82  Identities=23%  Similarity=0.297  Sum_probs=39.9

Q ss_pred             CCceEccCcccccccccceeE-EEeCcce-eeceeeccccccceeeeccccccceecccccccceecceeecccccccce
Q 023545          109 SAAQFGSADLRKAVHVKENFR-ANFTSAD-MRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV  186 (281)
Q Consensus       109 sg~~f~~adL~~~~F~~~~l~-a~f~~a~-L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~~A~  186 (281)
                      ++++|.+++|++++|.+++|. ++|.+++ |++|+|.+++|.+++|.+++|.+|+|.+++|+++.|.+++|.+|+|++++
T Consensus       193 sg~DLSGADFsg~DLSgAnFsgA~Lr~AdiL~gAdLsgAnLs~AdLs~AnFsgcnLs~AnLs~A~L~~AdFsgAdLkgAD  272 (782)
T PRK15377        193 ADRDFSNADFRNINFSKINPSGFMLRDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEAS  272 (782)
T ss_pred             CCCcCCCCCCCCCcccCCcchhhcccCCCCcCCCccCCeEcccchhhhhhhheeeecccccCcCEeCCCEecCCCCCCCC
Confidence            344444444444444444444 4444444 44444444444444455555555555555555555555555555555554


Q ss_pred             ecCc
Q 023545          187 LVRT  190 (281)
Q Consensus       187 L~~a  190 (281)
                      |.++
T Consensus       273 LSgS  276 (782)
T PRK15377        273 LKYS  276 (782)
T ss_pred             CCCC
Confidence            4444

>PRK15196 secreted effector protein PipB2; Provisional

Probab=99.58  E-value=6.4e-16  Score=147.28  Aligned_cols=35  Identities=23%  Similarity=0.299  Sum_probs=15.6

Q ss_pred             CCceEccCcccccccccceeE-EEeCcceeeceeec
Q 023545          109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFS  143 (281)
Q Consensus       109 sg~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~  143 (281)
                      .+++|++++|.+++|.+++|+ ++|.+++|.+++|.
T Consensus       190 ~~a~L~~AnLs~a~f~~a~L~~A~L~~a~l~~A~f~  225 (350)
T PRK15196        190 EGANFKGANLSGTSLGDSNFKNACLEDSIMCGATLD  225 (350)
T ss_pred             cCCeecCcchhhhhhccCccccceecccccceeEcc
Confidence            445555555544444444444 44444433333333

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=99.56  E-value=6.7e-16  Score=137.23  Aligned_cols=57  Identities=30%  Similarity=0.383  Sum_probs=25.6

Q ss_pred             ecccccccceecceeecccccccceecCccccceeecCceecCccccCceeCHHHHH
Q 023545          162 FTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQ  218 (281)
Q Consensus       162 l~gAdLs~a~f~~a~f~~A~L~~A~L~~a~f~~adL~gA~l~gAdf~~A~l~~~q~~  218 (281)
                      |+||+|.++.|.++++.+++|+.|+|+++.+.+++|++|+|.|+|+++++|++++++
T Consensus       218 LeganLkG~~~egs~m~ginLrvA~Lknanle~~NLrgA~LaGadLencnlsG~dLQ  274 (302)
T KOG1665|consen  218 LEGANLKGADMEGSQMTGINLRVATLKNANLENCNLRGANLAGADLENCNLSGADLQ  274 (302)
T ss_pred             ccccccccccccccccccceeEeccccccccccCccccccccCCccccCCCCCcchh
Confidence            333333334444444444444444444444444444444444555555555554443

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=99.56  E-value=9.6e-16  Score=136.23  Aligned_cols=28  Identities=25%  Similarity=0.331  Sum_probs=11.5

Q ss_pred             CCceEccCcccccccccceeE-EEeCcce
Q 023545          109 SAAQFGSADLRKAVHVKENFR-ANFTSAD  136 (281)
Q Consensus       109 sg~~f~~adL~~~~F~~~~l~-a~f~~a~  136 (281)
                      +|+|++..||+..+|+-++++ ++|.+++
T Consensus       139 SGaDLskLDlr~inFkyA~ls~c~lshtN  167 (302)
T KOG1665|consen  139 SGADLSKLDLRLINFKYANLSNCNLSHTN  167 (302)
T ss_pred             cccchhhcccccccceehhhccccccccc
Confidence            444444444444444443333 3333333

>PRK09718 hypothetical protein; Validated

Probab=99.51  E-value=8.4e-15  Score=142.55  Aligned_cols=48  Identities=10%  Similarity=0.309  Sum_probs=30.1

Q ss_pred             CCceEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccc
Q 023545          109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAV  156 (281)
Q Consensus       109 sg~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~  156 (281)
                      .+|+|++|+|++|+|.+++|. +.|.++.|.+|+|.+|+|.++.|.++.
T Consensus        98 egCdFsgCdFS~csFs~~dLqDV~FEcA~Lg~CNFsgAdLsgA~FarA~  146 (512)
T PRK09718         98 TSCHFKGDVISKVSFLSSNLQHVTFECKEIGDCNFTTAIVDNVIFKCRR  146 (512)
T ss_pred             cccEecCCEEeeceecCCEEEeEEEeccccCccccccCCCCCCccccce
Confidence            566666666666666667776 666666666666666665554333333

>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional

Probab=99.50  E-value=1.1e-14  Score=147.92  Aligned_cols=104  Identities=14%  Similarity=0.225  Sum_probs=81.7

Q ss_pred             CCCceEccCcccccccccceeE-EEeCcceeecee-eccccccceeeeccccccceecccccccceecceeecccccccc
Q 023545          108 GSAAQFGSADLRKAVHVKENFR-ANFTSADMRESD-FSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA  185 (281)
Q Consensus       108 ~sg~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~-f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~~A  185 (281)
                      .++++|.++||++++|.+++|. ++|.+++|++++ |.+|+|.+++|.+|+|.+++|.+|+|.+++|.+++|.+++|.+|
T Consensus       187 Le~vdFsg~DLSGADFsg~DLSgAnFsgA~Lr~AdiL~gAdLsgAnLs~AdLs~AnFsgcnLs~AnLs~A~L~~AdFsgA  266 (782)
T PRK15377        187 GEELTYADRDFSNADFRNINFSKINPSGFMLRDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNS  266 (782)
T ss_pred             CccCCcCCCcCCCCCCCCCcccCCcchhhcccCCCCcCCCccCCeEcccchhhhhhhheeeecccccCcCEeCCCEecCC
Confidence            4577888888888888888888 888888888888 88888888888888888888888888888888888888888888


Q ss_pred             eecCccccceee--cCceecCccccCce
Q 023545          186 VLVRTVLTRSDL--GGAIIEGADFSDAV  211 (281)
Q Consensus       186 ~L~~a~f~~adL--~gA~l~gAdf~~A~  211 (281)
                      +|.+++|.+++|  .++++.+++|++|+
T Consensus       267 dLkgADLSgS~lt~~~inLs~A~LkGA~  294 (782)
T PRK15377        267 DMNEASLKYSITTQQQPSFIETTLKNTI  294 (782)
T ss_pred             CCCCCCCCCCcccccccccchhhcCCcE
Confidence            888888888733  45555555655555

>PRK09718 hypothetical protein; Validated

Probab=99.49  E-value=9.5e-15  Score=142.22  Aligned_cols=37  Identities=3%  Similarity=0.048  Sum_probs=16.7

Q ss_pred             CCceEccCcccccccccceeE-EEeCcceeeceeeccc
Q 023545          109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGS  145 (281)
Q Consensus       109 sg~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a  145 (281)
                      ++|+|++++|.+++|.++.|. +.|.+|+|.+|+|.++
T Consensus       103 sgCdFS~csFs~~dLqDV~FEcA~Lg~CNFsgAdLsgA  140 (512)
T PRK09718        103 KGDVISKVSFLSSNLQHVTFECKEIGDCNFTTAIVDNV  140 (512)
T ss_pred             cCCEEeeceecCCEEEeEEEeccccCccccccCCCCCC
Confidence            445555544444444444444 4444444444443333

>PF13599 Pentapeptide_4: Pentapeptide repeats (9 copies); PDB: 2XTY_A 2XTW_C 2XTX_B 3PSS_B 3PSZ_B 3NB2_B 3NAW_B 3SQV_A 2W7Z_B 2XT2_A

Probab=99.31  E-value=2.3e-12  Score=95.64  Aligned_cols=61  Identities=21%  Similarity=0.400  Sum_probs=22.2

Q ss_pred             eeceeeccccccceeeecccccccee-cccccccceecceeecccccccceecCccccceee
Q 023545          137 MRESDFSGSKFNGAYLEKAVAYKANF-TGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDL  197 (281)
Q Consensus       137 L~~a~f~~a~L~~a~l~~a~f~~a~l-~gAdLs~a~f~~a~f~~A~L~~A~L~~a~f~~adL  197 (281)
                      |.+|+|.+++|.++.|.+++|.+++| .++.|.++.+.++.|.+++|.++.|.+++|.+++|
T Consensus         8 f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f   69 (78)
T PF13599_consen    8 FSGCNLSGANFSGSNFKNCNFSNCNFFKEANFSNCQLDNSDFSNCDLKRASFSNCDLDNCDF   69 (78)
T ss_dssp             EESCBCTTSBETTEEEESEBEETTBTTTTEBETTEBETTEBETTSBETTEEETTEB-TTEEE
T ss_pred             EECCCCCCCEeECCEEECcEEECCccccCCeEECCCCCCCEEEeCEEeCCEEecCCccCCEe
Confidence            33333333333333333333333333 33333333333333333333333333333333333

...

>PF13599 Pentapeptide_4: Pentapeptide repeats (9 copies); PDB: 2XTY_A 2XTW_C 2XTX_B 3PSS_B 3PSZ_B 3NB2_B 3NAW_B 3SQV_A 2W7Z_B 2XT2_A

Probab=99.30  E-value=3e-12  Score=95.04  Aligned_cols=75  Identities=20%  Similarity=0.411  Sum_probs=36.4

Q ss_pred             eeeceeeccccccceeeeccccccceeccccc-ccceecceeecccccccceecCccccceeecCceecCccccCce
Q 023545          136 DMRESDFSGSKFNGAYLEKAVAYKANFTGADL-SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAV  211 (281)
Q Consensus       136 ~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdL-s~a~f~~a~f~~A~L~~A~L~~a~f~~adL~gA~l~gAdf~~A~  211 (281)
                      +|++++|.+++|.++.|.++.|.+++|.+++| .++.|.++.|.+++|++++|.++.|.+++|.+++|++ +|.++.
T Consensus         2 ~~~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f~~-~l~~~~   77 (78)
T PF13599_consen    2 DFENCSFSGCNLSGANFSGSNFKNCNFSNCNFFKEANFSNCQLDNSDFSNCDLKRASFSNCDLDNCDFSG-NLKGCN   77 (78)
T ss_dssp             EEESEEEESCBCTTSBETTEEEESEBEETTBTTTTEBETTEBETTEBETTSBETTEEETTEB-TTEEETS-BCTTCB
T ss_pred             EEEEEEEECCCCCCCEeECCEEECcEEECCccccCCeEECCCCCCCEEEeCEEeCCEEecCCccCCEeEe-EcCCCc
Confidence            44455555555555555555555555555554 4444444444444444444444444444444444444 444443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	281
2g0y_A	184	Crystal Structure Of A Lumenal Pentapeptide Repeat		6e-18
2f3l_A	184	Crystal Structure Of A Lumenal Rfr-Domain Protein (		1e-17
3n90_A	152	The 1.7 Angstrom Resolution Crystal Structure Of At		6e-10
2j8k_A	201	Structure Of The Fusion Of Np275 And Np276, Pentape		2e-06
3du1_X	257	The 2.0 Angstrom Resolution Crystal Structure Of He		4e-05
2j8i_A	118	Structure Of Np275, A Pentapeptide Repeat Protein F		9e-05
2o6w_A	150	Crystal Structure Of A Pentapeptide Repeat Protein		8e-04

>pdb|2G0Y|A Chain A, Crystal Structure Of A Lumenal Pentapeptide Repeat Protein From Cyanothece Sp 51142 At 2.3 Angstrom Resolution. Tetragonal Crystal Form Length = 184

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 67/112 (59%)
Query: 130 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR 189
           A FT+AD+ +S+FS +   GA    +    A+  GADL++ L        A+LTNAVL  
Sbjct: 72  AQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTE 131
Query: 190 TVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGC 241
            ++ R+    A I GADFS AV+D+ +   LC  A+G NP TGVSTR+SL C
Sbjct: 132 AIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRESLRC 183

>pdb|2F3L|A Chain A, Crystal Structure Of A Lumenal Rfr-Domain Protein (Contig83.1_1_243_746) From Cyanothece Sp. 51142 At 2.1 Angstrom Resolution Length = 184

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 66/112 (58%)
Query: 130 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR 189
           A FT+AD+ +S+FS +   GA    +    A+  GADL++ L        A+LTNAVL  
Sbjct: 72  AQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTE 131
Query: 190 TVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGC 241
            +  R+    A I GADFS AV+D+ +   LC  A+G NP TGVSTR+SL C
Sbjct: 132 AIXXRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRESLRC 183

>pdb|3N90|A Chain A, The 1.7 Angstrom Resolution Crystal Structure Of At2g44920, A Pentapeptide Repeat Protein From Arabidopsis Thaliana Thylakoid Lumen Length = 152

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 128 FRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM---DRMVLN--EANL 182
            R +F ++ +R+++F G+K  GA       + A+ TGADLS+  +   D  + N  + NL
Sbjct: 29  IRQDFKTSILRQANFKGAKLLGASF-----FDADLTGADLSEADLRGADFSLANVTKVNL 83
Query: 183 TNAVLV-RTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGC 241
           TNA L   T++  +   G+ I GADF+D  +   Q+  LCK A+G N  TG +TR +L C
Sbjct: 84  TNANLEGATMMGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLC 143

>pdb|2J8K|A Chain A, Structure Of The Fusion Of Np275 And Np276, Pentapeptide Repeat Proteins From Nostoc Punctiforme Length = 201

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 37/147 (25%)
Query: 113 FGSADLRKAVHVKENF-----------RANFTSADMRESDFSGSKFNGAYLEKAVAYKAN 161
           F   DLR AV    N             AN   A++  +D SG+  NGA L       AN
Sbjct: 37  FSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLR-----GAN 91
Query: 162 FTGADLSD----------TLMDRMVLNEANLTNAVLVRTVLTR-----SDLGGAIIEGAD 206
            + ADLSD           ++D  VLN+ANL  A L + +L+      +DL  A +E AD
Sbjct: 92  LSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAAD 151
Query: 207 FSD---AVIDLAQ---KQALCKYANGT 227
            S    A+ DL Q    QA  + AN T
Sbjct: 152 LSGADLAIADLHQANLHQAALERANLT 178

>pdb|3DU1|X Chain X, The 2.0 Angstrom Resolution Crystal Structure Of Hetl, A Pentapeptide Repeat Protein Involved In Heterocyst Differentiation Regulation From The Cyanobacterium Nostoc Sp. Strain Pcc 7120 Length = 257

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 130 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR 189
           A+ + AD+R++    S F+   L +A   +A   G DLS+  + R +L EA+LT A LV+
Sbjct: 55  ADLSYADLRQTRLGKSNFSHTCLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVK 114
Query: 190 TVLTRSDLGGAIIEGADFSDA 210
           T L  ++L  A + GA+ + A
Sbjct: 115 TRLEEANLIKASLCGANLNSA 135

>pdb|2J8I|A Chain A, Structure Of Np275, A Pentapeptide Repeat Protein From Nostoc Punctiforme Length = 118

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 139 ESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLG 198
           E DFS     GA LE       N +GA L   ++D   L +ANL+ A L    L  +DL 
Sbjct: 34  ERDFSIVDLRGAVLENI-----NLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLR 88
Query: 199 GAIIEGADFSDAVID 213
           GA +  AD SDA++D
Sbjct: 89  GANLSKADLSDAILD 103

>pdb|2O6W|A Chain A, Crystal Structure Of A Pentapeptide Repeat Protein (Rfr23) From The Cyanobacterium Cyanothece 51142 Length = 150

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 129 RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV 188
           RAN ++A++ +SD S        LE A+  + N +  DL + ++    L  ANL NA L 
Sbjct: 60  RANLSNANLYQSDLSS-----IILENAILVETNLSETDLENAILIGANLQGANLENANLQ 114
Query: 189 RTVLTRSDLGGAIIEGADFSD 209
              L  ++L GAI+ G +  +
Sbjct: 115 GANLENANLRGAILTGVNLEE 135

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	281
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	5e-40
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	6e-09
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	8e-40
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	6e-05
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	3e-18
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	3e-17
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	2e-16
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	8e-16
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	2e-15
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	1e-13
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	1e-12
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	1e-12
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	1e-06
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	8e-18
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	8e-17
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	9e-17
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	1e-16
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	3e-15
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	5e-15
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	9e-15
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	1e-12
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	8e-05
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	2e-17
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	2e-17
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	3e-17
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	4e-17
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	7e-17
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	9e-15
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	1e-12
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	5e-17
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	2e-15
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	5e-14
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	2e-11
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	3e-07
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	1e-04
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	6e-17
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	1e-16
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	3e-16
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	2e-15
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	2e-14
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	3e-11
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	6e-05
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	1e-15
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	5e-15
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	2e-14
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	4e-13
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	2e-12
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	2e-07
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	4e-15
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	1e-13
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	4e-13
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	2e-12
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	4e-13
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	2e-12
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	9e-11
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	1e-10
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	1e-09
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	2e-09
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	8e-13
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	9e-08
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	4e-05
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	6e-05
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	1e-12
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	2e-12
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	3e-12
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	2e-11
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	4e-10
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	1e-09
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	1e-09
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	4e-08

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184

 Score =  136 bits (345), Expect = 5e-40
 Identities = 55/151 (36%), Positives = 79/151 (52%), Gaps = 1/151 (0%)

Query: 92  ADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGA 150
            DL   + +       GS+A +    L       ++   A FT+AD+ +S+FS +   GA
Sbjct: 33  PDLGTDDDDKAMAMVTGSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGA 92

Query: 151 YLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
               +    A+  GADL++ L        A+LTNAVL   ++ R+    A I GADFS A
Sbjct: 93  VFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLA 152

Query: 211 VIDLAQKQALCKYANGTNPITGVSTRKSLGC 241
           V+D+ +   LC  A+G NP TGVSTR+SL C
Sbjct: 153 VLDVYEVDKLCDRADGVNPKTGVSTRESLRC 183

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184

 Score = 53.3 bits (129), Expect = 6e-09
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 9/82 (10%)

Query: 129 RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV 188
             + +    R    SG K   A  E+      +    DL     D+  +     ++A   
Sbjct: 5   HHHSSGLVPR---GSGMKETAAKFERQ-----HMDSPDLGTDDDDK-AMAMVTGSSASYE 55

Query: 189 RTVLTRSDLGGAIIEGADFSDA 210
              L   D  G  +  A F++A
Sbjct: 56  DVKLIGEDFSGKSLTYAQFTNA 77

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152

 Score =  134 bits (341), Expect = 8e-40
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 7/148 (4%)

Query: 109 SAAQFGSADLRKAVHVKENFR------ANFTSADMRESDFSGSKFNGAYLEKAVAYKANF 162
               +G    R      ++F        +F ++ +R+++F G+K  GA    A    A+ 
Sbjct: 4   GGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADL 63

Query: 163 TGADLSDTLMDRMVLNEANLTNAVLVRTVL-TRSDLGGAIIEGADFSDAVIDLAQKQALC 221
           + ADL         + + NLTNA L    +   +   G+ I GADF+D  +   Q+  LC
Sbjct: 64  SEADLRGADFSLANVTKVNLTNANLEGATMMGNTSFKGSNITGADFTDVPLRDDQRVYLC 123

Query: 222 KYANGTNPITGVSTRKSLGCGNSRRNAY 249
           K A+G N  TG +TR +L C     + +
Sbjct: 124 KVADGVNATTGNATRDTLLCNLEHHHHH 151

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152

 Score = 41.3 bits (98), Expect = 6e-05
 Identities = 11/52 (21%), Positives = 17/52 (32%)

Query: 160 ANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAV 211
           A   G      +     L+  + +   L+R     S L  A  +GA    A 
Sbjct: 1   AFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGAS 52

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 79.4 bits (197), Expect = 3e-18
 Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 1/101 (0%)

Query: 111 AQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 169
             F   +L ++ H    FR   F    +  S F+     G+               D + 
Sbjct: 35  CDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTL 94

Query: 170 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
            ++    L   NLT   L  T L  +DL   ++ GAD S A
Sbjct: 95  AVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGA 135

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 76.7 bits (190), Expect = 3e-17
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 1/109 (0%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
             + F    +  +V V    R       D   +   G+   G  L      + +    DL
Sbjct: 63  WHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDL 122

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 216
              ++    L+ A  T A L    L  + +   +   A    A +D+ Q
Sbjct: 123 RKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQ 171

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 74.4 bits (184), Expect = 2e-16
 Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 6/103 (5%)

Query: 109 SAAQFGSADLRKAVHVKENF-RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
           + +Q   +  R        F R     +   +    GS F    L        +FT A L
Sbjct: 43  AESQHRGSAFRNC-----TFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVL 97

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
               +  + L    L    LV T L +  L GA + GA  + A
Sbjct: 98  GGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGA 140

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 72.9 bits (180), Expect = 8e-16
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 1/103 (0%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
           +   F   DL +    +  F   +F+  ++ ES   GS F     E+   + + F    +
Sbjct: 13  TGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSM 72

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
             ++     L    L +      VL  +DL G  + G    + 
Sbjct: 73  LGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRET 115

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 71.3 bits (176), Expect = 2e-15
 Identities = 17/104 (16%), Positives = 26/104 (25%), Gaps = 6/104 (5%)

Query: 109 SAAQFGSADLRKAVHVKENF-RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
             A F   D         N   +    +  R   F  +    +   +     + F    L
Sbjct: 28  ERAMFSECDFSGV-----NLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRL 82

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAV 211
               +D +    A L    L    LT   L    +   D    V
Sbjct: 83  RPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCV 126

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 66.7 bits (164), Expect = 1e-13
 Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 5/82 (6%)

Query: 129 RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV 188
              +   +    DF     +  + E+A+  + +F+G +L+++         +   N    
Sbjct: 4   MQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAES-----QHRGSAFRNCTFE 58

Query: 189 RTVLTRSDLGGAIIEGADFSDA 210
           RT L  S      + G+ F   
Sbjct: 59  RTTLWHSTFAQCSMLGSVFVAC 80

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 64.4 bits (158), Expect = 1e-12
 Identities = 21/104 (20%), Positives = 31/104 (29%), Gaps = 2/104 (1%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
                   D   AV    + R  N T   +RE+    +      L  A    A  TGA L
Sbjct: 83  RPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARL 142

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSD-LGGAIIEGADFSDA 210
            D  +    ++      A LV   +     +  A   G   +  
Sbjct: 143 DDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAGG 186

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 64.0 bits (157), Expect = 1e-12
 Identities = 11/82 (13%), Positives = 20/82 (24%)

Query: 129 RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV 188
              FT  D R+ D S      A   +      N   +    +           L ++   
Sbjct: 9   DCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFA 68

Query: 189 RTVLTRSDLGGAIIEGADFSDA 210
           +  +  S      +      D 
Sbjct: 69  QCSMLGSVFVACRLRPLTLDDV 90

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 46.7 bits (112), Expect = 1e-06
 Identities = 5/54 (9%), Positives = 18/54 (33%)

Query: 157 AYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
           ++   +   + +        L+  +   A+      +  +L  +   G+ F + 
Sbjct: 2   SHMQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNC 55

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 79.8 bits (198), Expect = 8e-18
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
           S      ADL +A+    +   A+   A +RE+D +G+K     LE+A   KA+  GA+L
Sbjct: 73  SHTCLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANL 132

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
           +   + R +L +A+L  +   RT L    L GA +  AD   A
Sbjct: 133 NSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADLSYADLRAA 175

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 77.2 bits (191), Expect = 8e-17
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 10/126 (7%)

Query: 86  SNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSG 144
           S+++    L  Y A             F   +L++      +   A+ + AD+R++    
Sbjct: 19  SHMNVGEILRHYAA---------GKRNFQHINLQEIELTNASLTGADLSYADLRQTRLGK 69

Query: 145 SKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEG 204
           S F+   L +A   +A   G DLS+  + R +L EA+LT A LV+T L  ++L  A + G
Sbjct: 70  SNFSHTCLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCG 129

Query: 205 ADFSDA 210
           A+ + A
Sbjct: 130 ANLNSA 135

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 76.8 bits (190), Expect = 9e-17
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 109 SAAQFGSADLRKAVHVKENF-RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
             A    ADL  A        +     A++ ++   G+  N A L + + ++A+   +  
Sbjct: 98  YRAILREADLTGA-----KLVKTRLEEANLIKASLCGANLNSANLSRCLLFQADLRPSSN 152

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAV 211
             T +  ++L  A+L+ A L    L  ++L GA +  A+F   +
Sbjct: 153 QRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTI 196

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 76.8 bits (190), Expect = 1e-16
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 6/103 (5%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
              + G ++           R A+ + A +   D S +    A L +A    A      L
Sbjct: 63  RQTRLGKSNFSHT-----CLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRL 117

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
            +  + +  L  ANL +A L R +L ++DL  +  +  D    
Sbjct: 118 EEANLIKASLCGANLNSANLSRCLLFQADLRPSSNQRTDLGYV 160

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 72.5 bits (179), Expect = 3e-15
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 9/115 (7%)

Query: 111 AQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 169
           A   SA+L + +  + + R ++    D+     +G+  + A L  A  + AN  GA L  
Sbjct: 130 ANLNSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCR 189

Query: 170 TLMDRMV--------LNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 216
               R +        L+ A+L  A L    L  + L  A ++GAD + A++  A+
Sbjct: 190 ANFGRTIQWGNLAADLSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAE 244

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 72.1 bits (178), Expect = 5e-15
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAY--------K 159
             +     DL   +    +   A+  +A +  ++  G+K   A   + + +         
Sbjct: 148 RPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGNLAADLSG 207

Query: 160 ANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSD 209
           A+  GADLS   ++  +L +ANL  A L   +L  ++L GAI+      D
Sbjct: 208 ASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIMPDGSIHD 257

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 71.4 bits (176), Expect = 9e-15
 Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 14/111 (12%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
              +   A+L KA     +   AN  SA++       +    +  ++        TGADL
Sbjct: 113 VKTRLEEANLIKA-----SLCGANLNSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADL 167

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRS--------DLGGAIIEGADFSDA 210
           S   +    L+ ANL  A L R    R+        DL GA ++GAD S A
Sbjct: 168 SYADLRAASLHHANLDGAKLCRANFGRTIQWGNLAADLSGASLQGADLSYA 218

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 130 ANFTSADMRESDFSGSKFN-GAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV 188
           ++            GS  N G  L    A K NF   +L +  +    L  A+L+ A L 
Sbjct: 4   SHHHHHHSSGLVPRGSHMNVGEILRHYAAGKRNFQHINLQEIELTNASLTGADLSYADLR 63

Query: 189 RTVLTRSDLGGAIIEGADFSDA 210
           +T L +S+     +  AD S+A
Sbjct: 64  QTRLGKSNFSHTCLREADLSEA 85

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 42.1 bits (100), Expect = 8e-05
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 152 LEKAVAYKANFTGADLSDTLMDR-MVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
           +  +  +  + +G     + M+   +L              L   +L  A + GAD S A
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMNVGEILRHYAAGKRNFQHINLQEIELTNASLTGADLSYA 60

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 78.3 bits (194), Expect = 2e-17
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
           +   F SA +        N   ANF+   + + +   +++ GA +  A    ++ +G + 
Sbjct: 110 TRTWFCSAYITNT-----NLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEF 164

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDL 214
           S    +       +LTN+ L    +   DL G  ++    S  +  L
Sbjct: 165 STFDWEAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLMERL 211

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 77.9 bits (193), Expect = 2e-17
 Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 1/109 (0%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
             A F  A     +  +  F  A  T+ ++  ++FS        L +     A   GA  
Sbjct: 95  QGADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATF 154

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 216
           S + +     +  +   A      LT S+LG   I G D     +D  Q
Sbjct: 155 SGSDLSGGEFSTFDWEAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQ 203

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 77.5 bits (192), Expect = 3e-17
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 6/103 (5%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
           S A F ++            R      AD R + F        +   A     N + A+ 
Sbjct: 75  SMADFRNSSALGI-----EIRHCRAQGADFRGASFMNMITTRTWFCSAYITNTNLSYANF 129

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
           S  ++++  L E     A ++    + SDL G      D+  A
Sbjct: 130 SKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWEAA 172

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 77.1 bits (191), Expect = 4e-17
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 11/108 (10%)

Query: 109 SAAQFGSADLRKAVHVKENFR------ANFTSADMRESDFSGSKFNGAYLEKAVAYKANF 162
             A F S DL  A     +FR              + +DF G+ F      +     A  
Sbjct: 65  KDAIFKSCDLSMA-----DFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSAYI 119

Query: 163 TGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
           T  +LS     ++VL +  L     +   +  +   G+ + G +FS  
Sbjct: 120 TNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTF 167

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 76.3 bits (189), Expect = 7e-17
 Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 2/104 (1%)

Query: 109 SAAQFGSADLRKAVHVKE-NFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD 166
           S  +F           K  NF  A    A  +  D S + F  +             GAD
Sbjct: 39  SGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGAD 98

Query: 167 LSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
                   M+       +A +  T L+ ++    ++E  +  + 
Sbjct: 99  FRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWEN 142

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 70.6 bits (174), Expect = 9e-15
 Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 2/107 (1%)

Query: 111 AQFGSADLRKAVHVKENF--RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS 168
             F  ADL     +   F  R +    +   +    + F    L  A    ++  G ++ 
Sbjct: 31  CDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIR 90

Query: 169 DTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLA 215
                      A+  N +  RT    + +    +  A+FS  V++  
Sbjct: 91  HCRAQGADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKC 137

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 64.4 bits (158), Expect = 1e-12
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 11/90 (12%)

Query: 127 NFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT------LMDRMVLNEA 180
           +         +  + F+G K   +       +  +F+GADLS T        DR      
Sbjct: 3   HMALALVGEKIDRNRFTGEKIENSTF-----FNCDFSGADLSGTEFIGCQFYDRESQKGC 57

Query: 181 NLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
           N + A+L   +    DL  A    +     
Sbjct: 58  NFSRAMLKDAIFKSCDLSMADFRNSSALGI 87

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 76.4 bits (189), Expect = 5e-17
 Identities = 20/110 (18%), Positives = 32/110 (29%), Gaps = 2/110 (1%)

Query: 109 SAAQFGSADLRKAVHVKENFR--ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD 166
              +    +   A           +F    + +S F G    G  + +   + ANFT AD
Sbjct: 77  VDCKMLGVNWTSAQWPSVKMEGALSFERCILNDSLFYGLYLAGVKMVECRIHDANFTEAD 136

Query: 167 LSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 216
             D    +  L  +   N  L       +      I   D   A   L +
Sbjct: 137 CEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHIDIFHNDIKRARFSLPE 186

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 72.2 bits (178), Expect = 2e-15
 Identities = 14/88 (15%), Positives = 28/88 (31%)

Query: 129 RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV 188
             ++        D SG        E     + NFT A+L+          + NL+   + 
Sbjct: 8   SKDYCGESFVSEDRSGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLISIP 67

Query: 189 RTVLTRSDLGGAIIEGADFSDAVIDLAQ 216
           +T           + G +++ A     +
Sbjct: 68  QTSFMEVRFVDCKMLGVNWTSAQWPSVK 95

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 68.3 bits (168), Expect = 5e-14
 Identities = 11/97 (11%), Positives = 27/97 (27%), Gaps = 1/97 (1%)

Query: 116 ADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDR 174
             L    +  E+F   + +   +    F    F      +A   +  F   +  D  +  
Sbjct: 4   KTLESKDYCGESFVSEDRSGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSL 63

Query: 175 MVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAV 211
           + + + +      V   +   +   A         A+
Sbjct: 64  ISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGAL 100

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 61.0 bits (149), Expect = 2e-11
 Identities = 10/78 (12%), Positives = 15/78 (19%)

Query: 133 TSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVL 192
            +  +   D+ G  F              F              LN         V   L
Sbjct: 2   PAKTLESKDYCGESFVSEDRSGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNL 61

Query: 193 TRSDLGGAIIEGADFSDA 210
           +   +         F D 
Sbjct: 62  SLISIPQTSFMEVRFVDC 79

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 49.0 bits (118), Expect = 3e-07
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 6/82 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGA-- 165
           + + F    L     V+     ANFT AD  ++DF+ S   G+         A+F  A  
Sbjct: 108 NDSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVN 167

Query: 166 ---DLSDTLMDRMVLNEANLTN 184
              D+    + R   +     +
Sbjct: 168 YHIDIFHNDIKRARFSLPEAAS 189

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 111 AQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 169
           A F  AD   A   + + + + F +  +  + F  +      +      +A F+  + + 
Sbjct: 130 ANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHIDIFHNDIKRARFSLPEAAS 189

Query: 170 TL 171
            L
Sbjct: 190 LL 191

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 76.4 bits (189), Expect = 6e-17
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
             A    ADL  A         A    A + E+  + +    A LE+A+   AN   ADL
Sbjct: 88  RGANLSKADLSDA-----ILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADL 142

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
           S+  ++   L+ A+L  A L +  L ++ L  A + GA+  DA
Sbjct: 143 SEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDA 185

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 75.2 bits (186), Expect = 1e-16
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
           S A   +A L  A+  +     AN  +A++ ++  S +    A L +A    A+ +GADL
Sbjct: 98  SDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADL 157

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
           +   + +  L++A L  A L    L  ++L G I+EG + + A
Sbjct: 158 AIADLHQANLHQAALERANLTGANLEDANLEGTILEGGNNNLA 200

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 74.0 bits (183), Expect = 3e-16
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 1/103 (0%)

Query: 109 SAAQFGSADLRKAVHVKENF-RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
           S A    A L +A   + N  RA+ + A +  +D  G+  + A L  A+   A   GA L
Sbjct: 53  SGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKADLSDAILDNAILEGAIL 112

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
            + ++++  L  ANL  A+L    +  +DL  A +E AD S A
Sbjct: 113 DEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGA 155

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 71.7 bits (177), Expect = 2e-15
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 6/103 (5%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
             A    ADL  A         A+   A++ ++D S +  + A LE A+  +A    A+L
Sbjct: 68  QQANLSRADLSGA-----TLNGADLRGANLSKADLSDAILDNAILEGAILDEAVLNQANL 122

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
               +++ +L+ AN+  A L    L  +DL GA +  AD   A
Sbjct: 123 KAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQA 165

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 69.4 bits (171), Expect = 2e-14
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 6/101 (5%)

Query: 111 AQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 169
             F   DLR A          N + A +  +    +    A L +A    A   GADL  
Sbjct: 35  RDFSIVDLRGA-----VLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRG 89

Query: 170 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
             + +  L++A L NA+L   +L  + L  A ++ A+   A
Sbjct: 90  ANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQA 130

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 60.6 bits (148), Expect = 3e-11
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 129 RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV 188
             + +    R S     K    Y     A + +F+  DL   +++ + L+ A L  A+L 
Sbjct: 8   HHHSSGLVPRGSHMDVEKLRQLYA----AGERDFSIVDLRGAVLENINLSGAILHGAMLD 63

Query: 189 RTVLTRSDLGGAIIEGADFSDA 210
              L +++L  A + GA  + A
Sbjct: 64  EANLQQANLSRADLSGATLNGA 85

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 42.1 bits (100), Expect = 6e-05
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 152 LEKAVAYKANFTGADLSDTLMDRMVL------NEANLTNAVLVRTVLTRSDLGGAIIEGA 205
           +  +  +  + +G     + MD   L       E + +   L   VL   +L GAI+ GA
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMDVEKLRQLYAAGERDFSIVDLRGAVLENINLSGAILHGA 60

Query: 206 DFSDA 210
              +A
Sbjct: 61  MLDEA 65

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 71.7 bits (177), Expect = 1e-15
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 6/103 (5%)

Query: 109 SAAQFGSADLRKAVHVKENF-RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
               FG    +       +  RAN ++A++ +SD S      A L +    + +   A L
Sbjct: 44  VTTPFGMDKAKPV-----DLTRANLSNANLYQSDLSSIILENAILVETNLSETDLENAIL 98

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
               +    L  ANL  A L    L  + L G  +E       
Sbjct: 99  IGANLQGANLENANLQGANLENANLRGAILTGVNLEETHLKGI 141

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 69.8 bits (172), Expect = 5e-15
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 6/103 (5%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
              +    DL +A     N   AN   +D+       +      L +     A   GA+L
Sbjct: 49  GMDKAKPVDLTRA-----NLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANL 103

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
               ++   L  ANL NA L   +LT  +L    ++G +    
Sbjct: 104 QGANLENANLQGANLENANLRGAILTGVNLEETHLKGIETDKN 146

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 68.2 bits (168), Expect = 2e-14
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 116 ADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRM 175
            +L +  +    +R   +S+ +  + F   K     L +A    AN   +DLS  +++  
Sbjct: 23  VNLPRE-NFGLKYRIPRSSSPLVTTPFGMDKAKPVDLTRANLSNANLYQSDLSSIILENA 81

Query: 176 VLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
           +L E NL+   L   +L  ++L GA +E A+   A
Sbjct: 82  ILVETNLSETDLENAILIGANLQGANLENANLQGA 116

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 64.4 bits (158), Expect = 4e-13
 Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 1/102 (0%)

Query: 109 SAAQFGSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS 168
                   +      +  +  +   +               A L  A  Y+++ +   L 
Sbjct: 21  EGVNLPRENFGLKYRIPRS-SSPLVTTPFGMDKAKPVDLTRANLSNANLYQSDLSSIILE 79

Query: 169 DTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
           + ++    L+E +L NA+L+   L  ++L  A ++GA+  +A
Sbjct: 80  NAILVETNLSETDLENAILIGANLQGANLENANLQGANLENA 121

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 62.8 bits (154), Expect = 2e-12
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 11/102 (10%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
           + A   +A+L ++     +       +A + E++ S +    A L  A    AN   A+L
Sbjct: 59  TRANLSNANLYQS-----DLSSIILENAILVETNLSETDLENAILIGANLQGANLENANL 113

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSD 209
                    L  ANL  A+L    L  + L G   +     D
Sbjct: 114 QGA-----NLENANLRGAILTGVNLEETHLKGIETDKNTVWD 150

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 48.6 bits (117), Expect = 2e-07
 Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 28/104 (26%)

Query: 115 SADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTG--------AD 166
           + +L +               ++   +                   NF          + 
Sbjct: 3   TNNLYRL-----ELERECVGCNLEGVNLPR---------------ENFGLKYRIPRSSSP 42

Query: 167 LSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
           L  T          +LT A L    L +SDL   I+E A   + 
Sbjct: 43  LVTTPFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVET 86

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 74.2 bits (182), Expect = 4e-15
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 10/119 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS 168
           +   F  A+L          RA F +++   S+   + F G+   +          ADL+
Sbjct: 85  NECNFCYANLSNC-----IIRALFENSNFSNSNLKNASFKGSSYIQY---PPILNEADLT 136

Query: 169 D-TLMDRMVLNEANLTNA-VLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYAN 225
              ++  MVL+ A L +   L        +LGG  I+ +D  + ++ +         + 
Sbjct: 137 GAIIIPGMVLSGAILGDVKELFSEKSNTINLGGCYIDLSDIQENILSVLDNYTKSNKSI 195

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 69.6 bits (170), Expect = 1e-13
 Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 8/103 (7%)

Query: 113 FGSADLRKA---VHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 169
            G A L KA     +              E ++SG   +G  L        NF+GA L D
Sbjct: 2   QGRACLSKAELTADLIWLSANRTGEESAEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDD 61

Query: 170 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 212
           T      L  ++L+ AVL       S L       A+ S+ +I
Sbjct: 62  T-----DLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCII 99

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 68.0 bits (166), Expect = 4e-13
 Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 22/143 (15%)

Query: 92  ADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAY 151
           A L+K  AE   +    SA + G                N++  D+      G   +   
Sbjct: 5   ACLSK--AELTADLIWLSANRTGEESAE---------ELNYSGCDLSGLSLVGLNLSSVN 53

Query: 152 LEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVL---------VRTVLTRSDLGGAII 202
              AV    +   +DLS  +++      + L              +R +   S+   + +
Sbjct: 54  FSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSNSNL 113

Query: 203 EGADFSDAVIDLAQKQALCKYAN 225
           + A F  +     Q   +   A+
Sbjct: 114 KNASFKGS--SYIQYPPILNEAD 134

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 65.7 bits (160), Expect = 2e-12
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 131 NFTSADMRESDFSGSKFN--GAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV 188
           +   A + +++ +            +  A + N++G DLS   +  + L+  N + AVL 
Sbjct: 1   SQGRACLSKAELTADLIWLSANRTGEESAEELNYSGCDLSGLSLVGLNLSSVNFSGAVLD 60

Query: 189 RTVLTRSDLGGAIIEGADFSDA 210
            T L  SDL  A++E   F ++
Sbjct: 61  DTDLRMSDLSQAVLENCSFKNS 82

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 65.9 bits (161), Expect = 4e-13
 Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 9/108 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS 168
            +      DLR          A+F   D+  +D S S+  G  L    A   NF+ A  +
Sbjct: 54  QSCLLQGCDLR---------EASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFA 104

Query: 169 DTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 216
           + +       EA+LT             L    + G  +  A +  A 
Sbjct: 105 NQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGAS 152

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 7/110 (6%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYL-EKAVAYKANFTGAD 166
              +F   DL         F   NF+  D+ E  F    F      +  +    +   A 
Sbjct: 8   EGVRFEQQDLEGEQFQGCRFIGCNFSWLDLAECRFVDCSFYDRESEQSCLLQGCDLREAS 67

Query: 167 LSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 216
                     L  A+ + +  +   L      G     A F++ +   + 
Sbjct: 68  FLRC-----DLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVXSY 112

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 59.4 bits (144), Expect = 9e-11
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 131 NFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT-----------LMDRMVLNE 179
            F      + D  G +F G           NF+  DL++                 +L  
Sbjct: 6   CFEGVRFEQQDLEGEQFQGCRFIGC-----NFSWLDLAECRFVDCSFYDRESEQSCLLQG 60

Query: 180 ANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
            +L  A  +R  LT +D   +   G +  D 
Sbjct: 61  CDLREASFLRCDLTMADCSRSQCLGLELRDC 91

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 6/118 (5%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
           S A F +     +   + +    NF+ A+         + +G   + A  + A+  G+DL
Sbjct: 99  SRASFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDL 158

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYAN 225
           S +   ++     NL    L +  L   DL    ++G   ++      Q+QAL +   
Sbjct: 159 SGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQINE-----DQQQALLEQIG 211

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 6/103 (5%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
           + A    +            R       +   + F+      +Y  +A     NF+ A+ 
Sbjct: 74  TMADCSRSQCLGL-----ELRDCQALGINFSRASFANQITVXSYFCEAHLTGNNFSYANF 128

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
              L+++  L+      A L    L  SDL G+     D++  
Sbjct: 129 EGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASV 171

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 24/109 (22%), Positives = 34/109 (31%), Gaps = 6/109 (5%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
           S +Q    +LR            NF+ A         S F  A+L       ANF G  L
Sbjct: 79  SRSQCLGLELRDC-----QALGINFSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLL 133

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 216
               +       ANL  A L  + L+ S+ G       +     +    
Sbjct: 134 EQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCD 182

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 67.4 bits (164), Expect = 8e-13
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 110 AAQFGSADLRKAVHVKENFR-ANFTSADMRESDFS------GSKFNGAYLEKAVAYKANF 162
           A +   A LR+           +F++AD R   FS        + +G  ++      + F
Sbjct: 19  AKKLTDAVLRQKAGETLTAADRDFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKF 78

Query: 163 TGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLA 215
           T +D+S    D      + L++ V   T  + SD+    ++ +  +       
Sbjct: 79  TYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFI 131

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 52.0 bits (124), Expect = 9e-08
 Identities = 17/137 (12%), Positives = 39/137 (28%), Gaps = 35/137 (25%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAV----------- 156
           + +        +       F  +  +      + FS S  N  +L+ ++           
Sbjct: 79  TYSDISHLHFDEC-----RFTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFIDT 133

Query: 157 -------AYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGA-DFS 208
                   +KAN +G            LNE + ++   V        LG   ++    ++
Sbjct: 134 TLKNTLIRHKANLSGVI----------LNEPDNSSPPSVSGGGNFIRLGDIWLQMPLLWT 183

Query: 209 DAVIDLAQKQALCKYAN 225
           +  +D           +
Sbjct: 184 ENAVDGFLNHEHNNGKS 200

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 43.9 bits (103), Expect = 4e-05
 Identities = 16/139 (11%), Positives = 30/139 (21%), Gaps = 29/139 (20%)

Query: 109 SAAQFGSADLRKAVHVKENF-RANFTSADMRESDFSGSKFNGAYLEKAVA---------- 157
           S   F       +            ++     SD +      +   +             
Sbjct: 84  SHLHFDECRFTYS-----TLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFIDTTLKNT 138

Query: 158 ---YKANFTGA----------DLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEG 204
              +KAN +G                  + + L +  L   +L         L      G
Sbjct: 139 LIRHKANLSGVILNEPDNSSPPSVSGGGNFIRLGDIWLQMPLLWTENAVDGFLNHEHNNG 198

Query: 205 ADFSDAVIDLAQKQALCKY 223
                 +  L  K +  K 
Sbjct: 199 KSILMTIDSLPDKYSQEKV 217

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 11/99 (11%), Positives = 30/99 (30%), Gaps = 11/99 (11%)

Query: 123 HVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV------ 176
           H   +  ++ +S        + +       E   A   +F+ AD  +    +++      
Sbjct: 3   HHHHHATSSPSSPADWAKKLTDAVLRQKAGETLTAADRDFSNADFRNITFSKILPPSFME 62

Query: 177 -----LNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
                +   N +N+    + ++           +  SD 
Sbjct: 63  RDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDV 101

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 64.5 bits (157), Expect = 1e-12
 Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 5/81 (6%)

Query: 130 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR 189
             +   D+   +     F  A  +        F   D S+           + +N   + 
Sbjct: 35  HLYQQIDLPNQEVRNLVFRDAVFDHLSLANGQFASFDCSNV-----RFEACDFSNVEWLS 89

Query: 190 TVLTRSDLGGAIIEGADFSDA 210
               R       + G +F+D+
Sbjct: 90  GSFHRVTFLRCNLTGTNFADS 110

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 63.8 bits (155), Expect = 2e-12
 Identities = 13/106 (12%), Positives = 30/106 (28%), Gaps = 6/106 (5%)

Query: 111 AQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 169
           A F    L         F   + ++      DFS  ++      +    + N TG + +D
Sbjct: 55  AVFDHLSLANG-----QFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFAD 109

Query: 170 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLA 215
           + +   +  +     A                +  ++F +      
Sbjct: 110 SYLXDCLFEDCXADYASFRFANFNLVHFNQTRLVESEFFEVTWXXL 155

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 63.4 bits (154), Expect = 3e-12
 Identities = 15/106 (14%), Positives = 26/106 (24%), Gaps = 1/106 (0%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
               +   DL         FR A F    +    F+    +    E        +     
Sbjct: 33  ENHLYQQIDLPNQEVRNLVFRDAVFDHLSLANGQFASFDCSNVRFEACDFSNVEWLSGSF 92

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVID 213
                 R  L   N  ++ L   +        A    A+F+    +
Sbjct: 93  HRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVHFN 138

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 61.1 bits (148), Expect = 2e-11
 Identities = 14/104 (13%), Positives = 24/104 (23%), Gaps = 1/104 (0%)

Query: 114 GSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM 172
             A L   ++ + +       +   R++ F                   F   D S+   
Sbjct: 28  DEAILENHLYQQIDLPNQEVRNLVFRDAVFDHLSLANGQFASFDCSNVRFEACDFSNVEW 87

Query: 173 DRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 216
                +        L  T    S L   + E      A    A 
Sbjct: 88  LSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFAN 131

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 57.2 bits (138), Expect = 4e-10
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 1/101 (0%)

Query: 111 AQFGSADLRKAVHVKENF-RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 169
            +F + D      +  +F R  F   ++  ++F+ S       E   A  A+F  A+ + 
Sbjct: 75  VRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNL 134

Query: 170 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
              ++  L E+          +L   DL  +          
Sbjct: 135 VHFNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGL 175

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 56.0 bits (135), Expect = 1e-09
 Identities = 13/104 (12%), Positives = 29/104 (27%), Gaps = 6/104 (5%)

Query: 111 AQFGSADLRKAVHVKENF-RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 169
               +            F   +F++ +     F    F    L        NF  + L D
Sbjct: 60  LSLANGQFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLT-----GTNFADSYLXD 114

Query: 170 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVID 213
            L +    + A+   A        ++ L  +      +   +++
Sbjct: 115 CLFEDCXADYASFRFANFNLVHFNQTRLVESEFFEVTWXXLLLE 158

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 56.0 bits (135), Expect = 1e-09
 Identities = 14/109 (12%), Positives = 25/109 (22%), Gaps = 1/109 (0%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
           +  QF S D         +F    + S       F      G     +      F     
Sbjct: 63  ANGQFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXA 122

Query: 168 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 216
                     N  +     LV +          ++E  D +++      
Sbjct: 123 DYASFRFANFNLVHFNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTS 171

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 11/123 (8%)

Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADM----------RESDFSGSKFNGAYLEKAVA 157
           S  ++ S    +   ++ N    NF  + +            + F  + FN  +  +   
Sbjct: 83  SNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVHFNQTRL 142

Query: 158 YKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQK 217
            ++ F        L++   L E+N  N  L     +++            S   +   Q 
Sbjct: 143 VESEFFEVTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFERLTFSPNYLSGLXVTPEQA 202

Query: 218 QAL 220
             L
Sbjct: 203 IYL 205

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	281
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	99.95
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	99.92
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	99.8
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	99.8
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	99.76
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	99.75
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	99.74
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	99.74
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	99.74
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	99.72
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	99.72
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	99.71
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	99.69
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	99.67
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	99.67
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	99.57
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	99.51

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A

Probab=99.95  E-value=5.6e-29  Score=215.58  Aligned_cols=135  Identities=39%  Similarity=0.600  Sum_probs=129.0

Q ss_pred             CCCceEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccceecceeecccccccce
Q 023545          108 GSAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV  186 (281)
Q Consensus       108 ~sg~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~~A~  186 (281)
                      ..+.+|++++|++++|.+++|+ ++|.+|+|.+++|++++|++++|.+++|.+++|.+|+|+++.|.+++|.+|+|++|+
T Consensus        49 ~~~~~f~~~~l~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~L~~a~l~~a~f~~a~L~~a~  128 (184)
T 2f3l_A           49 GSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAV  128 (184)
T ss_dssp             ---CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCB
T ss_pred             ccCccccCCeECCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEEeeeccCCCeEEEeecccceecCcEeCccEeCCCE
Confidence            3578999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCccccceeecCceecCccccCceeCHHHHHHHhhhcCCCCCCCCcccccccCCC
Q 023545          187 LVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCG  242 (281)
Q Consensus       187 L~~a~f~~adL~gA~l~gAdf~~A~l~~~q~~~lc~~a~g~np~tg~~tr~sLgc~  242 (281)
                      |.+++|.+++|.+++|++++|++|+|.+.++..+|.+++|+||+||++||++|||+
T Consensus       129 l~~a~l~~a~f~~a~L~gadf~~a~l~~~~l~~~c~~~~g~n~~t~~~tr~sl~c~  184 (184)
T 2f3l_A          129 LTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRESLRCQ  184 (184)
T ss_dssp             CTTCEEEEEECTTCBCTTCBCTTCEECHHHHHHHHTTCCCBCTTTCCBHHHHTTC-
T ss_pred             eeCCEECCCEEeCCEecCCEecCCCCCcChHHHhhccccCCCcccccchhhhcCCC
Confidence            99999999999999999999999999999999999999999999999999999996

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0

Probab=99.92  E-value=2.6e-26  Score=192.35  Aligned_cols=137  Identities=29%  Similarity=0.395  Sum_probs=123.8

Q ss_pred             CCCceEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccceecceeecccccccce
Q 023545          108 GSAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV  186 (281)
Q Consensus       108 ~sg~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~~A~  186 (281)
                      ..+++|++++|++++|.+++|. ++|.+++|.+++|.+++|.+++|.+++|.+++|.+|+|++++|.+++|.+++|++|+
T Consensus         8 ~~~~~~~~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~   87 (152)
T 3n90_A            8 YGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNAN   87 (152)
T ss_dssp             CCHHHHTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCB
T ss_pred             ccCceEcCCCccCCcCCCCCcCcCccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCCC
Confidence            3467788888888888888888 888888888888888888899999999999999999999999999999999999999


Q ss_pred             ecCccccc-eeecCceecCccccCceeCHHHHHHHhhhcCCCCCCCCcccccccCCCCC
Q 023545          187 LVRTVLTR-SDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNS  244 (281)
Q Consensus       187 L~~a~f~~-adL~gA~l~gAdf~~A~l~~~q~~~lc~~a~g~np~tg~~tr~sLgc~~~  244 (281)
                      |.+++|.+ ++|++++|++++|+++.|.+.++..+|.+++|+||.+|..||++|.|...
T Consensus        88 l~~a~~~g~~~~~~a~l~~a~~~~a~l~~~~l~~lc~~~~g~n~~~~~~tr~~~~~~~~  146 (152)
T 3n90_A           88 LEGATMMGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCNLE  146 (152)
T ss_dssp             CTTCBCCSSCBCTTCBCTTCBCTTCCCCHHHHHHHHHHCCCBCTTTCCBHHHHTTTTC-
T ss_pred             CCCCEEcCCceECCCEecCCEecCCccCcHHHHHHhhhhhCcCCccccchhhhhhhhhh
Confidence            99999995 99999999999999999999999999999999999999999999987654

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}

Probab=99.80  E-value=1.7e-20  Score=156.91  Aligned_cols=18  Identities=6%  Similarity=0.075  Sum_probs=9.2

Q ss_pred             CCceEccCcccccccccc
Q 023545          109 SAAQFGSADLRKAVHVKE  126 (281)
Q Consensus       109 sg~~f~~adL~~~~F~~~  126 (281)
                      .+|+|++++|++++|.++
T Consensus        16 ~~~~l~~~dL~~~~l~~~   33 (150)
T 2o6w_A           16 VGCNLEGVNLPRENFGLK   33 (150)
T ss_dssp             TTCBCTTCBCTTCBCSSS
T ss_pred             CCcccCCCCCCCCCcccC
Confidence            345555555555555444

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}

Probab=99.80  E-value=4.8e-21  Score=160.31  Aligned_cols=107  Identities=21%  Similarity=0.320  Sum_probs=54.4

Q ss_pred             CCCceEccCccccc-------------ccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccceec
Q 023545          108 GSAAQFGSADLRKA-------------VHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMD  173 (281)
Q Consensus       108 ~sg~~f~~adL~~~-------------~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~  173 (281)
                      .++++|++++|+++             +|.+++|. ++|.+++|++++|.+++|++++|.+++|.+++|.+++|++++|.
T Consensus        20 l~~~dL~~~~l~~~~~~~~~~~~l~~~~f~~a~l~~~~l~~a~l~~a~l~~a~l~~a~~~~a~l~~a~l~~a~l~~a~~~   99 (150)
T 2o6w_A           20 LEGVNLPRENFGLKYRIPRSSSPLVTTPFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLENAILI   99 (150)
T ss_dssp             CTTCBCTTCBCSSSCBCC---CTTCCBSTTCTTCCCCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCT
T ss_pred             cCCCCCCCCCcccCcccccccCccccCccCCCCcCCCEeCCCCCCCCCccCCCCCCCCcCCCCCCCCEecCCCCCCCEec
Confidence            45666666666655             45555555 55555555555555555555555555555555555555444444


Q ss_pred             ceeecccccccceecCccccceeecCceecCccccCceeCH
Q 023545          174 RMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDL  214 (281)
Q Consensus       174 ~a~f~~A~L~~A~L~~a~f~~adL~gA~l~gAdf~~A~l~~  214 (281)
                      +++|.+++|++|+|.+++|.+++|++++|.+++|++++|.+
T Consensus       100 ~a~L~~a~l~~a~L~~a~~~~a~L~~a~l~~a~l~~a~l~g  140 (150)
T 2o6w_A          100 GANLQGANLENANLQGANLENANLRGAILTGVNLEETHLKG  140 (150)
T ss_dssp             TCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred             CCCCCCCCCCCceecccEECCCCcCcCCccCCCCCCCCcCC
Confidence            44444444444444444444444444444444444444443

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A

Probab=99.76  E-value=5.9e-19  Score=151.43  Aligned_cols=57  Identities=23%  Similarity=0.337  Sum_probs=25.7

Q ss_pred             eecccccccceecceeecccccccceecCccccceeecCceecCccccCceeCHHHH
Q 023545          161 NFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQK  217 (281)
Q Consensus       161 ~l~gAdLs~a~f~~a~f~~A~L~~A~L~~a~f~~adL~gA~l~gAdf~~A~l~~~q~  217 (281)
                      +|++++|++++|.+++|.+|+|++++|.+++|++++|.+++|++++|++|.|.+.++
T Consensus       101 ~l~~a~f~~a~l~~a~f~~a~L~~a~f~~~~l~~a~f~~a~L~~adl~~a~l~~~~~  157 (186)
T 2bm5_A          101 DLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLW  157 (186)
T ss_dssp             BCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCHHHH
T ss_pred             ccCCCeeccCEEecCccCCCccCCCCcCCCccCCCEecCCccCCcccCCCEeecccc
Confidence            333333333334444444444444444444444444444455555555555555443

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}

Probab=99.75  E-value=8.4e-19  Score=153.47  Aligned_cols=34  Identities=12%  Similarity=0.063  Sum_probs=14.8

Q ss_pred             ecCccccceeecCceecCccccCceeCHHHHHHH
Q 023545          187 LVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQAL  220 (281)
Q Consensus       187 L~~a~f~~adL~gA~l~gAdf~~A~l~~~q~~~l  220 (281)
                      |.+++|.+++|.+++|.+++|++|+|+..|...+
T Consensus       172 l~~~~l~~a~l~~~~~~~a~l~ga~~~~~q~~~l  205 (214)
T 2w7z_A          172 LXGLDFSQNTFERLTFSPNYLSGLXVTPEQAIYL  205 (214)
T ss_dssp             CTTCBCTTSBCSCCBCCGGGCTTCEECHHHHHHH
T ss_pred             eccCCcccCCcCceEcCHHHcCCcccCHHHHHHH
Confidence            3333333333344444444444555555554443

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0

Probab=99.74  E-value=2.6e-19  Score=149.70  Aligned_cols=103  Identities=22%  Similarity=0.351  Sum_probs=46.0

Q ss_pred             CceEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccceecceeecccccccceec
Q 023545          110 AAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV  188 (281)
Q Consensus       110 g~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~~A~L~  188 (281)
                      +++|.+++|++++|.+++|. ++|.+++|.+|+|.+++|.+++|.+++|.+|+|++++|.+++|.+++|.+|+|+++.|.
T Consensus        15 ~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~~~   94 (152)
T 3n90_A           15 GQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATMM   94 (152)
T ss_dssp             TCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCC
T ss_pred             CCCccCCcCCCCCcCcCccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCCCCCCCEEc
Confidence            33444444444444444444 44444444444444444444444444444444444444444444444444444444444


Q ss_pred             C-ccccceeecCceecCccccCcee
Q 023545          189 R-TVLTRSDLGGAIIEGADFSDAVI  212 (281)
Q Consensus       189 ~-a~f~~adL~gA~l~gAdf~~A~l  212 (281)
                      + ++|.+++|++++|++++|+++.+
T Consensus        95 g~~~~~~a~l~~a~~~~a~l~~~~l  119 (152)
T 3n90_A           95 GNTSFKGSNITGADFTDVPLRDDQR  119 (152)
T ss_dssp             SSCBCTTCBCTTCBCTTCCCCHHHH
T ss_pred             CCceECCCEecCCEecCCccCcHHH
Confidence            2 44444444444444444444444

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A

Probab=99.74  E-value=1.5e-18  Score=152.09  Aligned_cols=37  Identities=32%  Similarity=0.362  Sum_probs=16.6

Q ss_pred             ceecCccccceeecCceecCccccCceeCHHHHHHHh
Q 023545          185 AVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALC  221 (281)
Q Consensus       185 A~L~~a~f~~adL~gA~l~gAdf~~A~l~~~q~~~lc  221 (281)
                      ++|++++|++++|.++++++++|++++++..|...+.
T Consensus       172 a~l~~adl~~a~l~~~~l~~a~l~ga~~~~~q~~~l~  208 (217)
T 2xty_A          172 ANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLM  208 (217)
T ss_dssp             SBCTTCBCTTCBCTTCCTTTSCCTTCEECHHHHHHHH
T ss_pred             CcCCCCcCCCCCcCCCcCCCCccCcCEechHHHHHHH
Confidence            3333333333334444444444555555555554443

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A

Probab=99.74  E-value=2.9e-19  Score=154.47  Aligned_cols=107  Identities=24%  Similarity=0.260  Sum_probs=63.3

Q ss_pred             ceEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccceecceeecccccccceecC
Q 023545          111 AQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR  189 (281)
Q Consensus       111 ~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~~A~L~~  189 (281)
                      ..+.+++|++++|.+++|. ++|.+++|.+|+|.+++|++++|.+++|.+|+|.+++|++++|.+++|.+++|++|+|.+
T Consensus        47 ~~~~~~~f~~~~l~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~L~~a~l~~a~f~~a~L~~  126 (184)
T 2f3l_A           47 VTGSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTN  126 (184)
T ss_dssp             -----CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTT
T ss_pred             ccccCccccCCeECCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEEeeeccCCCeEEEeecccceecCcEeCccEeCC
Confidence            3444555666666666666 666666666666666666666666666666666666666666666666666666666666


Q ss_pred             ccccceeecCceecCccccCceeCHHHH
Q 023545          190 TVLTRSDLGGAIIEGADFSDAVIDLAQK  217 (281)
Q Consensus       190 a~f~~adL~gA~l~gAdf~~A~l~~~q~  217 (281)
                      ++|.+++|.+++|.+++|++|+|.++.+
T Consensus       127 a~l~~a~l~~a~f~~a~L~gadf~~a~l  154 (184)
T 2f3l_A          127 AVLTEAIMMRTKFDDAKITGADFSLAVL  154 (184)
T ss_dssp             CBCTTCEEEEEECTTCBCTTCBCTTCEE
T ss_pred             CEeeCCEECCCEEeCCEecCCEecCCCC
Confidence            6666666666666666666666665554

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A

Probab=99.72  E-value=2.7e-18  Score=149.35  Aligned_cols=38  Identities=26%  Similarity=0.281  Sum_probs=18.0

Q ss_pred             ceecCccccceeecCceecCccccCceeCHHHHHHHhh
Q 023545          185 AVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCK  222 (281)
Q Consensus       185 A~L~~a~f~~adL~gA~l~gAdf~~A~l~~~q~~~lc~  222 (281)
                      ++|++++|++++|.++++.+++|++++++..|...+++
T Consensus       171 ~~l~~a~l~~a~l~~~~l~~~~l~ga~~~~~q~~~l~~  208 (216)
T 3pss_A          171 VNLQGCDLRQCDLPGLDLRRVNLDGVQINEDQQQALLE  208 (216)
T ss_dssp             SBCTTCBCTTCCCTTCCTTTSCCTTCEEEGGGHHHHHH
T ss_pred             cccCCCCccCCEecCcccccCcccCcEeCHHHHHHHHH
Confidence            33333444444444444444455555555555555443

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A

Probab=99.72  E-value=2.6e-18  Score=147.73  Aligned_cols=59  Identities=8%  Similarity=0.229  Sum_probs=23.0

Q ss_pred             eEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccc
Q 023545          112 QFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT  170 (281)
Q Consensus       112 ~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a  170 (281)
                      +|.+++|++++|.+++|. +.|.+|+|.+|+|.+++|.++.|.++.|.+|+|.+++|+++
T Consensus        30 ~~~~~~f~~~~~~~~~l~~~~~~~~~f~~~~l~~a~~~~a~l~~~~f~~~~l~~a~f~~a   89 (200)
T 2xt2_A           30 RFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSA   89 (200)
T ss_dssp             EEESCEEESCBCTTCEEESCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBGGGS
T ss_pred             EEccCEEEeeeccCCeecCCEEEecEeeecccccCccccCeeeeeEEEcCEecCCccccC
Confidence            333333333333333333 33333333344444433333333333333333333333333

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A

Probab=99.71  E-value=2.9e-18  Score=147.50  Aligned_cols=104  Identities=19%  Similarity=0.256  Sum_probs=43.9

Q ss_pred             ceEccCcccccccccceeE-EEeCcceeeceeecccc------ccceeeeccccccceecccccccceecceeecccccc
Q 023545          111 AQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSK------FNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLT  183 (281)
Q Consensus       111 ~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~------L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~  183 (281)
                      |+|.+++|++++|.+++|. +.|.+|+|.+++|.+++      |.++.|.+++|.+++|.+++|.+++|.+++|.+++|+
T Consensus        54 ~~f~~~~l~~a~~~~a~l~~~~f~~~~l~~a~f~~a~~~~~~~l~~~~f~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~  133 (200)
T 2xt2_A           54 CEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGALSFERCILNDSLFYGLYLAGVKMVECRIHDANFT  133 (200)
T ss_dssp             EEEESCBCTTCBCTTCEEEEEEEESCBCTTCBGGGSCCCSSCCTTSEEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCT
T ss_pred             cEeeecccccCccccCeeeeeEEEcCEecCCccccCcccccccccceEEEcCcccccEEccCccCCCEecCCEeecccCC
Confidence            3333344444444444444 44444444444444444      3333344444444444444444444444444444444


Q ss_pred             cceecCccccceeecCceecCccccCceeCH
Q 023545          184 NAVLVRTVLTRSDLGGAIIEGADFSDAVIDL  214 (281)
Q Consensus       184 ~A~L~~a~f~~adL~gA~l~gAdf~~A~l~~  214 (281)
                      +|+|++++|.+++|++++|.+++|++++|.+
T Consensus       134 ~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~  164 (200)
T 2xt2_A          134 EADCEDADFTQSDLKGSTFHNTKLTGASFID  164 (200)
T ss_dssp             TCBCTTCBCTTCBCTTCBCSSCBCTTCBCTT
T ss_pred             CCccccCCccCcccCCCCccCCccccCCcCC
Confidence            4444444444444444444444444444433

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A

Probab=99.69  E-value=8.6e-18  Score=146.15  Aligned_cols=40  Identities=20%  Similarity=0.227  Sum_probs=18.2

Q ss_pred             CceEccCcccccccccceeE-EEeCcceeeceeeccccccc
Q 023545          110 AAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNG  149 (281)
Q Consensus       110 g~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~  149 (281)
                      +++|.+++|++++|.+++|. ++|.+|+|.+++|.+++|.+
T Consensus        65 ~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~a~l~~  105 (216)
T 3pss_A           65 EASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFAN  105 (216)
T ss_dssp             TCEEESCBCTTCBCTTCBCTTEEEESCBCTTCBCTTCBCEE
T ss_pred             CCCcCccCCCCCccCCCCcccCCcccCcccCCCcccCcccc
Confidence            34444444444444444444 44444444444444444433

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A

Probab=99.67  E-value=1.9e-17  Score=165.91  Aligned_cols=85  Identities=22%  Similarity=0.321  Sum_probs=44.9

Q ss_pred             CCceEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccce----ecceeecccccc
Q 023545          109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTL----MDRMVLNEANLT  183 (281)
Q Consensus       109 sg~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~----f~~a~f~~A~L~  183 (281)
                      ++++|++++|++++|.+++|. ++|.+|+|++|+|.+++|.+|+|.+|+|.+|+|.+|+|++|+    |.+++|.+|+|+
T Consensus        35 sgadLsgadfsg~dLs~a~fsgA~L~~a~f~~anLsgA~L~gA~L~~a~L~~anL~~AnL~~A~L~a~L~~A~LsgAdL~  114 (613)
T 3nb2_A           35 SGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSNSNLK  114 (613)
T ss_dssp             TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEECTTCBCTTCBCT
T ss_pred             CCCEecCCCcCCCcCCCCcccCCeeeEEEecCCEeCCCCCCCCEeCCCccCCCccCCCccccCcccceeccCEecCCeec
Confidence            455555555555555555555 555555555555555555555555555555555555555555    444444444444


Q ss_pred             cceecCcccc
Q 023545          184 NAVLVRTVLT  193 (281)
Q Consensus       184 ~A~L~~a~f~  193 (281)
                      +|+|.+++|.
T Consensus       115 ~AdL~gA~f~  124 (613)
T 3nb2_A          115 NASFKGSSYI  124 (613)
T ss_dssp             TCBCTTCBCS
T ss_pred             ccEEeccEEe
Confidence            4444444443

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A

Probab=99.67  E-value=1.1e-17  Score=167.54  Aligned_cols=108  Identities=19%  Similarity=0.272  Sum_probs=69.5

Q ss_pred             CCceEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccceeccee----ecccccc
Q 023545          109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV----LNEANLT  183 (281)
Q Consensus       109 sg~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~----f~~A~L~  183 (281)
                      .+++|++++|++++|.+++|. ++|.+|+|.+|+|.+|+|.+|+|.+|+|.+|+|.+|+|.+|+|.+++    |.+|+|+
T Consensus        30 ~~~dfsgadLsgadfsg~dLs~a~fsgA~L~~a~f~~anLsgA~L~gA~L~~a~L~~anL~~AnL~~A~L~a~L~~A~Ls  109 (613)
T 3nb2_A           30 EELNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNFS  109 (613)
T ss_dssp             TTTBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEECTTCBCT
T ss_pred             CCCeeCCCEecCCCcCCCcCCCCcccCCeeeEEEecCCEeCCCCCCCCEeCCCccCCCccCCCccccCcccceeccCEec
Confidence            466666666666666666666 66666666666666666666666666666666666666666666666    6666666


Q ss_pred             cceecCccccceeecC--ceecCccccCcee-CHHH
Q 023545          184 NAVLVRTVLTRSDLGG--AIIEGADFSDAVI-DLAQ  216 (281)
Q Consensus       184 ~A~L~~a~f~~adL~g--A~l~gAdf~~A~l-~~~q  216 (281)
                      +|+|.+|+|.+++|++  |+|.+|+|++|.| .+++
T Consensus       110 gAdL~~AdL~gA~f~~~~adL~gAdL~gA~Ll~gAd  145 (613)
T 3nb2_A          110 NSNLKNASFKGSSYIQYPPILNEADLTGAIIIPGMV  145 (613)
T ss_dssp             TCBCTTCBCTTCBCSSSCCBCTTCBCTTCEECTTCC
T ss_pred             CCeecccEEeccEEecCccceeccccCCCeeCCCce
Confidence            6666666666666664  5555555555555 4444

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A

Probab=99.57  E-value=1e-15  Score=152.26  Aligned_cols=108  Identities=16%  Similarity=0.207  Sum_probs=47.7

Q ss_pred             CCCceEccCcccccccccce------eE-EEeCcceeeceeeccccccceeeeccccccceecccccccceecceeeccc
Q 023545          108 GSAAQFGSADLRKAVHVKEN------FR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEA  180 (281)
Q Consensus       108 ~sg~~f~~adL~~~~F~~~~------l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A  180 (281)
                      ..+.+|+++||++++|.+++      .. ++|.+++|.+|+|.+++|++++|.+|+|.+++|++|+|.+|+|.+|+|.+|
T Consensus        37 ~~drDFsg~DLsgadLs~a~~~a~le~~ga~L~GanLsgAnLs~AdLs~A~L~gAnLs~AnLsgA~L~~AnLsgAnLsgA  116 (627)
T 2qyu_A           37 AADRDFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEV  116 (627)
T ss_dssp             TTTTBCTTCBCTTCBGGGTSCGGGGSTTCCCEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTC
T ss_pred             ccCCcCCCCCCCCCccccccccccccccCCccCCCccCCCccCCCCCCCCccCCcccCCCchhhhccccceECCcCCCCc
Confidence            34567777888887777752      11 233333333333333333333333333333333333333333333333333


Q ss_pred             ccccceec--CccccceeecCcee-cCccccCceeCHH
Q 023545          181 NLTNAVLV--RTVLTRSDLGGAII-EGADFSDAVIDLA  215 (281)
Q Consensus       181 ~L~~A~L~--~a~f~~adL~gA~l-~gAdf~~A~l~~~  215 (281)
                      +|.+|+|.  +|+|.+|+|++|+| .||+|++|.|.+.
T Consensus       117 nL~gA~L~~~gAnLsgAdL~gA~L~~gAdLsGA~L~~a  154 (627)
T 2qyu_A          117 FLQYSITTQQQPSFIDTTLKNTLIRHKANLSGVILNEP  154 (627)
T ss_dssp             EECCCTTCCSCCEEEEEECTTCEECSCCEEEEEECCCC
T ss_pred             ccCCccccCCCCeeCCCCCCCCccccCccCCCCcCCCC
Confidence            33333332  34444455555544 3455555555443

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A

Probab=99.51  E-value=4.1e-15  Score=147.87  Aligned_cols=106  Identities=17%  Similarity=0.184  Sum_probs=56.1

Q ss_pred             cCCCceEccCccccc------ccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccceecceeecc
Q 023545          107 IGSAAQFGSADLRKA------VHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE  179 (281)
Q Consensus       107 ~~sg~~f~~adL~~~------~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~  179 (281)
                      ..++++|++++|.++      +..+|+|. ++|.+|+|.+++|++++|.+|+|.+|+|.+++|++|+|++|+|.+++|.+
T Consensus        41 DFsg~DLsgadLs~a~~~a~le~~ga~L~GanLsgAnLs~AdLs~A~L~gAnLs~AnLsgA~L~~AnLsgAnLsgAnL~g  120 (627)
T 2qyu_A           41 DFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQY  120 (627)
T ss_dssp             BCTTCBCTTCBGGGTSCGGGGSTTCCCEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCEECC
T ss_pred             cCCCCCCCCCccccccccccccccCCccCCCccCCCccCCCCCCCCccCCcccCCCchhhhccccceECCcCCCCcccCC
Confidence            345666767666654      33444444 44444444444444444444444444444444444444444444455555


Q ss_pred             cccc--cceecCccccceee-cCceecCccccCcee
Q 023545          180 ANLT--NAVLVRTVLTRSDL-GGAIIEGADFSDAVI  212 (281)
Q Consensus       180 A~L~--~A~L~~a~f~~adL-~gA~l~gAdf~~A~l  212 (281)
                      |+|+  +|+|.+|+|++++| .+|+|+||+|+++..
T Consensus       121 A~L~~~gAnLsgAdL~gA~L~~gAdLsGA~L~~ad~  156 (627)
T 2qyu_A          121 SITTQQQPSFIDTTLKNTLIRHKANLSGVILNEPDN  156 (627)
T ss_dssp             CTTCCSCCEEEEEECTTCEECSCCEEEEEECCCCCS
T ss_pred             ccccCCCCeeCCCCCCCCccccCccCCCCcCCCCcc
Confidence            4443  45555555555555 356666666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	281
d2f3la1	132	b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cya	3e-21
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	1e-13
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	6e-10
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	3e-04
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	7e-05
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	0.003
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	0.004

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]} Length = 132

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

 Score = 84.9 bits (209), Expect = 3e-21
 Identities = 51/132 (38%), Positives = 72/132 (54%), Gaps = 1/132 (0%)

Query: 111 AQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 169
           A +    L       ++   A FT+AD+ +S+FS +   GA    +    A+  GADL++
Sbjct: 1   ASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTN 60

Query: 170 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNP 229
            L        A+LTNAVL   ++ R+    A I GADFS AV+D+ +   LC  A+G NP
Sbjct: 61  GLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNP 120

Query: 230 ITGVSTRKSLGC 241
            TGVSTR+SL C
Sbjct: 121 KTGVSTRESLRC 132

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 65.3 bits (158), Expect = 1e-13
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 111 AQFGSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT 170
           A   +A L  A+       A    A+++ ++   +  + A + +A   +AN   ADLS  
Sbjct: 80  AILDNAILEGAIL----DEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGA 135

Query: 171 LMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSD 209
            +    L++ANL  A L R  LT ++L  A +EG     
Sbjct: 136 DLAIADLHQANLHQAALERANLTGANLEDANLEGTILEG 174

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 54.9 bits (131), Expect = 6e-10
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 129 RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLN-----EANLT 183
            A    A + E+  + +    A LE+A+   AN   ADLS+  ++   L+      A+L 
Sbjct: 84  NAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLH 143

Query: 184 NAVLVRTVLTRSDLGGAIIEGADFSDAVID 213
            A L +  L R++L GA +E A+    +++
Sbjct: 144 QANLHQAALERANLTGANLEDANLEGTILE 173

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 35/117 (29%)

Query: 129 RANFTSADMRESDFSGSKFNGAYLEKAV-------------------------------- 156
             +F+  D+R +       +GA L  A+                                
Sbjct: 14  ERDFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLS 73

Query: 157 ---AYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
                 A    A L   ++D  VLN+ANL  A L + +L+ +++  A +  A+   A
Sbjct: 74  KADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAA 130

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.4 bits (93), Expect = 7e-05
 Identities = 7/45 (15%), Positives = 20/45 (44%)

Query: 131 NFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRM 175
            +   +    DF     +  + E+A+  + +F+G +L+++     
Sbjct: 2   QWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGS 46

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 13/55 (23%), Positives = 21/55 (38%)

Query: 166 DLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQAL 220
           DL   ++    L+ A  T A L    L  + +   +   A    A +D+ Q  A 
Sbjct: 117 DLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAF 171

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 137 MRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVL-VRTVLTRS 195
           + ++D       GA L  A    A    ADL    +D ++   A+L  A + V   +  +
Sbjct: 113 LVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFA 172

Query: 196 DLGGAIIEG 204
              G  + G
Sbjct: 173 AAHGLCLAG 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	281
d2f3la1	132	Lumenal RFR-domain protein {Cyanothece sp. atcc 51	99.94
d2f3la1	132	Lumenal RFR-domain protein {Cyanothece sp. atcc 51	99.75
d2bm5a1	181	Hypothetical protein Rv3361c (MT3469) {Mycobacteri	99.69
d2bm5a1	181	Hypothetical protein Rv3361c (MT3469) {Mycobacteri	99.66
d2j8ka1	175	NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}	99.61

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

Probab=99.94  E-value=6e-28  Score=195.38  Aligned_cols=131  Identities=39%  Similarity=0.596  Sum_probs=127.4

Q ss_pred             ceEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccceecceeecccccccceecC
Q 023545          111 AQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR  189 (281)
Q Consensus       111 ~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~~A~L~~  189 (281)
                      ++|++++|++++|.+++|. ++|.+++|++++|.+++|.++.|.+++|.+++|.+++|++++|.+++|.+++|++++|.+
T Consensus         1 A~F~~~~L~~~dfs~~~l~~a~f~~~~L~~~~f~~a~l~ga~f~~~~l~~~~~~~a~l~~a~~~~~~~~~~~~~~a~~~~   80 (132)
T d2f3la1           1 ASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTE   80 (132)
T ss_dssp             CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTT
T ss_pred             CccCCCCccCCcCCCCcCCCCcccCCCCccccccccccceeeecccccccccccccccccccccccccchhhhccCCcCC
Confidence            4788999999999999999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeecCceecCccccCceeCHHHHHHHhhhcCCCCCCCCcccccccCC
Q 023545          190 TVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGC  241 (281)
Q Consensus       190 a~f~~adL~gA~l~gAdf~~A~l~~~q~~~lc~~a~g~np~tg~~tr~sLgc  241 (281)
                      ++|.+++|++++|++++|++|.|++++++.+|.+++|+||.++.+||.+|||
T Consensus        81 a~l~~a~~~~a~l~~adfs~a~L~~~~l~~~~~~~~g~n~~~~~~~~~~l~~  132 (132)
T d2f3la1          81 AIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRESLRC  132 (132)
T ss_dssp             CEEEEEECTTCBCTTCBCTTCEECHHHHHHHHTTCCCBCTTTCCBHHHHTTC
T ss_pred             CCcCCCCcCCCEECcCCCCCccCCHHHHHHHhccCcccCCCCcchhhhccCC
Confidence            9999999999999999999999999999999999999999999999999998

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

Probab=99.75  E-value=7.3e-20  Score=147.28  Aligned_cols=105  Identities=25%  Similarity=0.264  Sum_probs=61.8

Q ss_pred             CceEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccceecceeecccccccceec
Q 023545          110 AAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV  188 (281)
Q Consensus       110 g~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~~A~L~  188 (281)
                      +++|.++||++++|.+++|. ++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|.
T Consensus         5 ~~~L~~~dfs~~~l~~a~f~~~~L~~~~f~~a~l~ga~f~~~~l~~~~~~~a~l~~a~~~~~~~~~~~~~~a~~~~a~l~   84 (132)
T d2f3la1           5 DVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTEAIMM   84 (132)
T ss_dssp             SCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEE
T ss_pred             CCCccCCcCCCCcCCCCcccCCCCccccccccccceeeecccccccccccccccccccccccccchhhhccCCcCCCCcC
Confidence            45555555555555555555 55555555555555555555555555555555555555555555555555555555555


Q ss_pred             CccccceeecCceecCccccCceeCH
Q 023545          189 RTVLTRSDLGGAIIEGADFSDAVIDL  214 (281)
Q Consensus       189 ~a~f~~adL~gA~l~gAdf~~A~l~~  214 (281)
                      +++|.+++|++++|.+|+|+++.|+.
T Consensus        85 ~a~~~~a~l~~adfs~a~L~~~~l~~  110 (132)
T d2f3la1          85 RTKFDDAKITGADFSLAVLDVYEVDK  110 (132)
T ss_dssp             EEECTTCBCTTCBCTTCEECHHHHHH
T ss_pred             CCCcCCCEECcCCCCCccCCHHHHHH
Confidence            55555555555555555555555544

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=6.3e-18  Score=142.34  Aligned_cols=65  Identities=23%  Similarity=0.280  Sum_probs=32.7

Q ss_pred             eccccccceecccccccceecceeecccccccceecCccccceeecCceecCccccCceeCHHHH
Q 023545          153 EKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQK  217 (281)
Q Consensus       153 ~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~~A~L~~a~f~~adL~gA~l~gAdf~~A~l~~~q~  217 (281)
                      .++.|.+++|.+++|.++.|.+++|.+++|++++|.+++|++++|.+++|.++||+++.|++..+
T Consensus        89 ~~~~f~~~~~~~~~~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~~~~a~l~~adf~~~~~~~~~~  153 (181)
T d2bm5a1          89 TLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLW  153 (181)
T ss_dssp             TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCHHHH
T ss_pred             ccccccccccccccccchhhcccceecccccccchhheeecCcCccCCCcCCCCcCCCEecCCCc
Confidence            33333333344444444444444444455555555555555555555555556666666665554

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=9e-18  Score=141.39  Aligned_cols=37  Identities=35%  Similarity=0.432  Sum_probs=14.5

Q ss_pred             cccccceecCccccceeecCceecCccccCceeCHHH
Q 023545          180 ANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ  216 (281)
Q Consensus       180 A~L~~A~L~~a~f~~adL~gA~l~gAdf~~A~l~~~q  216 (281)
                      ++|++++|.+++|.+++|++++|.+++|++++|.+++
T Consensus       111 ~~f~~~~l~~~~f~~~~l~~~~~~~a~l~~adf~~~~  147 (181)
T d2bm5a1         111 TSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGAT  147 (181)
T ss_dssp             CBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCB
T ss_pred             cceecccccccchhheeecCcCccCCCcCCCCcCCCE
Confidence            3333333333333333333344444444444444433

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.61  E-value=1.7e-16  Score=132.82  Aligned_cols=102  Identities=31%  Similarity=0.391  Sum_probs=38.8

Q ss_pred             CceEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccceecceeecccccccceec
Q 023545          110 AAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV  188 (281)
Q Consensus       110 g~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~~A~L~  188 (281)
                      +++|++++|++++|.++.|. ++|.+++|.+|+|.+++|.++.+.+++|.++.+.+++|+++.|.+++|.+++|+++.+.
T Consensus        24 ~~~f~~~~f~~~~f~~~~f~~~~f~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~~~f~~~~f~~~~f~~~~~~  103 (175)
T d2j8ka1          24 GAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKADLSDAILDNAILEGAILDEAVLNQANLK  103 (175)
T ss_dssp             TCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCT
T ss_pred             CCccCCcCCCCCCcCCCCcchhhccccccccccccccccccccccccccccccccCccccccCccCCcccCeEeeecccc
Confidence            34444444444444444444 44444444333333333333333333333333333333333333333333333333333


Q ss_pred             CccccceeecCceecCccccCce
Q 023545          189 RTVLTRSDLGGAIIEGADFSDAV  211 (281)
Q Consensus       189 ~a~f~~adL~gA~l~gAdf~~A~  211 (281)
                      +++|.+++|.+++|.+++|+++.
T Consensus       104 ~~~~~~s~~~~~~f~~~~f~~~~  126 (175)
T d2j8ka1         104 AANLEQAILSHANIREADLSEAN  126 (175)
T ss_dssp             TCBCTTCBCTTCBCTTCBCTTCB
T ss_pred             cccccCCEeCCCEeccCCCCCCc
Confidence            33333333333333333333333