Citrus Sinensis ID: 023552

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Protein Sequence
MGKRGRDRRASNLTSVSHKPISLRDEKAGKKLVNTTNVKSKLELEHLQRLAVWASSETSVPSLAALFGHRLASANEVLGLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSHHNLKRGTPVGHMKEICPMKAKPSSRPQCGSKSPLKRSANTTKDTRSKDEVSKVDDEALPSISKNCVETPPLKSRITLEGKKRRRKSGNKNSAESESNSAVTDDKTVGVSSRRRRTSWTSLKEIAERSEDDNGRMANLTIPFSL
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEccHHHHHHHcccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccHEEccccccEEEEEccHHHHHHccccccccccccEEEEEEccccccccccccccccHccccccccccccccccccccccccccccccEEcccHEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHccccccccccEEEEEEEccc
Coil and Loop (DISEMBL)
mgkrgrdrrasnltsvshkpislrdekagkklvnttnVKSKLELEHLQRLAVWASSETSVPSLAALFGHRLASAnevlglqpdpsffscqrcetvlqpgfnctirieknqvksrrrwkkpktsmqntvvykchfcshhnlkrgtpvghmkeicpmkakpssrpqcgsksplkrsanttkdtrskdevskvddealpsiskncvetpplksritlegkkrrrksgnknsaesesnsavtddktvgvssrrrrtsWTSLKEIAErseddngrmanltipfsl
Flexible Loop (DISEMBL)
mgkrgrdrrasnltsvshkpislrdekagkklvnttnvkskleLEHLQRLAVWASSETSVPSLAALFGHRLASANEVLGLQPDPSFFSCQRCETvlqpgfnctirieknqvksrrrwkkpktsmqntvvyKCHFCSHHNLKRGTPVGHMKEICPMkakpssrpqcgsksplkrsanttkdtrskdevskvddealpsiskncvetpplksritlegkkrrrksgnknsaesesnsavtddktvgvssrrrrtswtslkeiaerseddngrmanltipfsl
Low Complexity Region (SEG)
MGKRGRDRRASNLTSVSHKPISLRDEKAGKKLVNTTNVKSKLELEHLQRLAVWASSETSVPSLAALFGHRLASANEVLGLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSHHNLKRGTPVGHMKEICPMKAKPSSRPQCGSKSPLKRSANTTKDTRSKDEVSKVDDEALPSISKNCVETPPLKSRITLEgkkrrrksgnknsaesesnsaVTDDKTVGVssrrrrtswtsLKEIAERSEDDNGRMANLTIPFSL
Disordered region (IsUnstruct)
****************************************KLELEHLQRLAVWASSETSVPSLAALFGHRLASANEVLGLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQV************MQNTVVYKCHFCSHHNLKRGTPVG*************************************************************************************************************************************
Disordered Region (DISOPRED)
****************************************KLELEHLQRLAVWASSETSVPSLAALFGHRLASANEVLGLQPDPSFFSCQRCETVLQPGFNCTIR*******************QNTVVYKCHFCSHHNLK***********************************************************************************************************************************NLTIPFSL
Disordered Region (DISEMBL)
***************VSHKPISLRDEKAGKKLVNTTNVKSKLELEHLQRLAVWASSETSVPSLAALFGHRLASANEVLGLQPDPSFFSCQRCETVLQPGFNCTIRIEKN**************MQNTVVYKCHFCSHHNLKRGTPVGHMKEICP*************************************DEALPSISKNCVETPPLKSRITLE**************************************WTSLKEIAERSEDDNGRMANLTIPFSL
Disordered Region (DISPRO)
*************************E*AGKKLVNTTNVKSKLELEHLQRLAVWASSETSVPSLAALFGHRLASANEVLGLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSHHNLKRGTPVGHM*EIC****************************RSKD*VSKVD********************************************************RRRRTSWTSLKEIAERSEDDNGRMANLTIPFSL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKRGRDRRASNLTSVSHKPISLRDEKAGKKLVNTTNVKSKLELEHLQRLAVWASSETSVPSLAALFGHRLASANEVLGLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSHHNLKRGTPVGHMKEICPMKAKPSSRPQCGSKSPLKRSANTTKDTRSKDEVSKVDDEALPSISKNCVETPPLKSRITLEGKKRRRKSGNKNSAESESNSAVTDDKTVGVSSRRRRTSWTSLKEIAERSEDDNGRMANLTIPFSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
255577706	290	conserved hypothetical protein [Ricinus	0.978	0.944	0.520	8e-66
255537463	293	conserved hypothetical protein [Ricinus	0.992	0.948	0.494	1e-65
225430641	301	PREDICTED: uncharacterized protein LOC10	0.971	0.903	0.469	1e-61
356495682	282	PREDICTED: uncharacterized protein LOC10	0.971	0.964	0.493	1e-60
358346589	287	hypothetical protein MTR_082s0033 [Medic	0.982	0.958	0.486	4e-58
388512033	334	unknown [Lotus japonicus]	0.989	0.829	0.465	1e-55
449457658	350	PREDICTED: uncharacterized protein LOC10	0.985	0.788	0.394	8e-45
224071876	335	predicted protein [Populus trichocarpa]	0.678	0.567	0.539	1e-44
42568241	258	uncharacterized protein [Arabidopsis tha	0.85	0.922	0.433	1e-40
388497646	222	unknown [Lotus japonicus]	0.575	0.725	0.536	4e-40

>gi|255577706|ref|XP_002529729.1| conserved hypothetical protein [Ricinus communis] gi|223530793|gb|EEF32658.1| conserved hypothetical protein [Ricinus communis]

 Score =  256 bits (654), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 152/292 (52%), Positives = 192/292 (65%), Gaps = 18/292 (6%)

Query: 1   MGKRGRDRRASNLTSVSHKPISLRDEKAGK---KLVNTTNVKSKLELEHLQRLAVWASSE 57
           MGKRG  ++  +  + SHK ISLR E  G+   K  +  N KS L+LEHLQ L+VWAS E
Sbjct: 1   MGKRGGTKKQPDTPTPSHKSISLRQETTGRIQTKGASVRNPKSFLKLEHLQNLSVWASRE 60

Query: 58  TSVPSLAALFGHRLASANEVLGLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRRW 117
            S+PSL+A FG + A+A E LGL PD +   CQRCET+LQPG NCT+RI K   KSRRR 
Sbjct: 61  ASIPSLSAFFGRQFAAAGEALGLLPDHALIPCQRCETLLQPGLNCTVRIVKTLAKSRRRH 120

Query: 118 KKPKTSMQNTVVYKCHFCSHHNLKRGTPVGHMKEICPMKAKPSSRPQC---GSKSPLKRS 174
           KKP TSMQ+ VVY CHFCSH NLKRG   G+MKEI P  +KP  +P      SKS  +RS
Sbjct: 121 KKPNTSMQSNVVYNCHFCSHRNLKRGCAKGYMKEIWP--SKPKQKPSAESKPSKSIPERS 178

Query: 175 ANTTKDTRSKDEVSKVDDEALPSISKN-CV----ETPPLKSRITLEGKKRRRKSGNKNSA 229
            +    +  KDE+ K+D+  LP +S + C+     TP +KS  TL   KRR++  NK+ A
Sbjct: 179 VSLENVSGIKDEMVKMDEITLPPLSGDTCITNSPATPLVKSGATLLDAKRRKR--NKSGA 236

Query: 230 -ESESNSAVTD-DKTVGVSSRRRRTSWTSLKEIAERSEDDNGR-MANLTIPF 278
            E++SN A  D ++TV  SS+R+R SWTSLKEIAE  E D+ R + NLTIPF
Sbjct: 237 KETDSNKASKDSERTVNASSKRKRKSWTSLKEIAESKEHDSTRNVTNLTIPF 288

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537463|ref|XP_002509798.1| conserved hypothetical protein [Ricinus communis] gi|223549697|gb|EEF51185.1| conserved hypothetical protein [Ricinus communis]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 146/295 (49%), Positives = 190/295 (64%), Gaps = 17/295 (5%)

Query: 1   MGKRGRDRRASNLTSVSHKPISLRDEKAGK---KLVNTTNVKSKLELEHLQRLAVWASSE 57
           MGK+G  ++     + SH  ISLR E  G+   K     N KS L+LEHLQ L++W + E
Sbjct: 1   MGKKGGIKKPPYTPTPSHTSISLRQETTGRIQAKGATVRNPKSFLKLEHLQNLSLWTARE 60

Query: 58  TSVPSLAALFGHRLASANEVLGLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRRW 117
            S+PSL+A FG +LA+A E LG   DP+ F CQRCET+LQPG NCT+RI K   KSRRR 
Sbjct: 61  ASIPSLSAFFGRQLAAAGEALGFPSDPALFPCQRCETLLQPGLNCTVRIAKTLAKSRRRH 120

Query: 118 KKPKTSMQNTVVYKCHFCSHHNLKRGTPVGHMKEICPMKAKPSSRPQCGSK--SPLKRSA 175
           KKP TSMQN VVY CHFCSH NLKRG+  G+MKEICP  +KP  +P   SK   P+   +
Sbjct: 121 KKPNTSMQNNVVYNCHFCSHQNLKRGSTKGYMKEICP--SKPKQKPSARSKPSKPMPEKS 178

Query: 176 NTTKD-TRSKDEVSKVDDEALPSI-SKNCV----ETPPLKSRITLEGKKRRR--KSGNKN 227
            + +D +  KDE+  +D+ ALP +    C+     TP +KS  TL   KRR+  +SG K 
Sbjct: 179 VSLEDVSEIKDEMVNMDEIALPPLFGDTCITNSSPTPLVKSGATLLDAKRRKRNRSGAKR 238

Query: 228 SAESESNSAVTD-DKTVGVSSRRRRTSWTSLKEIAERSEDDNGR-MANLTIPFSL 280
           S ES++ +A  D ++T   SS+R+R SWTSLKEIAE  E D+ + +ANL IPF +
Sbjct: 239 SEESDNTNAAKDGERTGNASSKRKRKSWTSLKEIAESKEHDSTQNVANLAIPFFI 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430641|ref|XP_002267590.1| PREDICTED: uncharacterized protein LOC100243390 [Vitis vinifera]

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 145/309 (46%), Positives = 187/309 (60%), Gaps = 37/309 (11%)

Query: 1   MGKRGRDRRASNLTSVSHKPISLRDEKAGKKL----VNTTNVKSKLELEHLQRLAVWASS 56
           M K    R+ S L S SH  I+LR+E +G+K       +TN+KS L+L+HL+ LA+WAS 
Sbjct: 1   MAKNRDKRKGSGLPSASHTSITLREENSGRKQNKAKGGSTNMKSMLKLQHLKSLAMWASQ 60

Query: 57  ETSVPSLAALFGHRLASANEVLGLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRR 116
           E S+PSL A FGHRL S        PD S F CQRCET+LQPG NCT+RI+ N+ +++  
Sbjct: 61  EASIPSLGAFFGHRLMSCGV-----PDQSLFPCQRCETILQPGQNCTVRIKPNRARAQHG 115

Query: 117 WKKPKTSMQNTVVYKCHFCSHHNLKRGTPVGHMKEICPMKAKPSSRPQCGSKSPLKRSAN 176
            KK   S QN V+Y CHFCSHHN+KRGTP GHMKEICP K KPS  P     +P+ ++A 
Sbjct: 116 TKKSYASTQNNVIYWCHFCSHHNVKRGTPKGHMKEICP-KVKPS--PVSKHTNPMPQNAA 172

Query: 177 TTKDTRSK-------DEVSK---------VDDEALPSIS-----KNCVETPPLKSRITLE 215
             +            DE++          +D  A P+++      N   TP +++  TL 
Sbjct: 173 DPQTVHQNEVEVCKTDEIASSATALDIPIIDSPATPTVATDTPITNSPATPLVRTGNTLL 232

Query: 216 GKKRRR--KSGNKNSAESESNSAVTD-DKTVGVSSRRRRTSWTSLKEIAERSEDDNGR-M 271
           G KRR+  K G+   AE ESNSA  D  K+V  S++RRR SWTSL+EIAE SE  N R +
Sbjct: 233 GGKRRKRNKPGSSKQAEPESNSASADTQKSVSTSNKRRRKSWTSLREIAETSEQGNTRNI 292

Query: 272 ANLTIPFSL 280
           ANLTIPF L
Sbjct: 293 ANLTIPFFL 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495682|ref|XP_003516703.1| PREDICTED: uncharacterized protein LOC100775737 [Glycine max]

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 143/290 (49%), Positives = 181/290 (62%), Gaps = 18/290 (6%)

Query: 1   MGKRGRDRRASNLTSVSHKPISLRDEKAGK-KLVNTTNVKSKLELEHLQRLAVWASSETS 59
           MGK+G  ++   L S SH PISLR+E  GK +    +N KSKL  EHL+ LAVWA   T+
Sbjct: 1   MGKKGGAKK---LESASHTPISLREEATGKIQTKAASNTKSKLRFEHLKNLAVWA---TT 54

Query: 60  VPSLAALFGHRLASANEVLGLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRRWKK 119
           +PSL A +GH+ A+  E  G+ PDPS  +CQRCET+LQPGFN T+RIEKN+ K R R KK
Sbjct: 55  IPSLGAFYGHQFATFGEATGIPPDPSLITCQRCETILQPGFNSTVRIEKNKSKVRHRHKK 114

Query: 120 PKTSMQNTVVYKCHFCSHHNLKRGTPVGHMKEICPMKAKPSSRPQCGSKSPLKRSANTTK 179
                QN VVYKCHFC H NLKRGT  GH+K ICP K K        S S    S+   K
Sbjct: 115 SCNITQNKVVYKCHFCLHQNLKRGTLKGHIKGICPSKDKSLLELTPPSISITSDSSKLEK 174

Query: 180 DTRSKDEVSKVDDEALPS--ISK-----NCVETPPLKSRIT-LEGKKRRRKSG-NKNSAE 230
              SKDE +++     PS  ++K     N + TP   +  T LEGKKRRR+S  +KN+ +
Sbjct: 175 AIVSKDESNEI--HLFPSRVVAKDITLVNGLATPSSTNTTTLLEGKKRRRESSLSKNAIK 232

Query: 231 SESNSAVTDDKTVGVSSRRRRTSWTSLKEIAERSEDDNGRMANLTIPFSL 280
           + + SA    K+   SS+RRR SWTSLKEIA+ +E    ++ANLTIPF L
Sbjct: 233 TINKSAKEVAKSTSTSSKRRRKSWTSLKEIAQSNEHKKNQIANLTIPFYL 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346589|ref|XP_003637349.1| hypothetical protein MTR_082s0033 [Medicago truncatula] gi|355503284|gb|AES84487.1| hypothetical protein MTR_082s0033 [Medicago truncatula]

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 142/292 (48%), Positives = 185/292 (63%), Gaps = 17/292 (5%)

Query: 1   MGKRGRDRRASNLTSVSHKP---ISLRDEKAGK-KLVNTTNVKSKLELEHLQRLAVWASS 56
           MGK+G    A NL     KP   I+LR+E  GK K     N KS L ++HL+ LA+WA++
Sbjct: 1   MGKKGG---AKNLPKSELKPQNRITLREEATGKLKTKPIVNTKSHLRIDHLKNLALWATT 57

Query: 57  ETSVPSLAALFGHRLASANEVLGLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRR 116
           + ++PSL+A +G +LA+ +E  G+ PDPS  +CQRCETVL PGFN T+RIEKN+ K RRR
Sbjct: 58  DPNIPSLSAFYGRQLAAVSEASGVAPDPSLITCQRCETVLHPGFNSTVRIEKNRSK-RRR 116

Query: 117 WKKPKTSMQNTVVYKCHFCSHHNLKRGTPVGHMKEICPMKAKPSSRPQCGSKSPLKRSAN 176
            KK  +  QN VVY CHFCSH NLKRGT  GH+K+IC  K K S      +K  +  S+ 
Sbjct: 117 NKKFGSISQNNVVYNCHFCSHRNLKRGTAKGHVKKICSTKVKSSLESTPATKPIVHESSK 176

Query: 177 TTKDTRSKDEVSKVDDEALPSISKNC-----VETPPLKSRIT-LEGKKRRRKS-GNKNSA 229
             K    KDEV K++      ++K+      ++TP   S  T LEGKKR R S  +KN+ 
Sbjct: 177 LEKKIVIKDEVGKINAFGSEVVAKDATLMDGLQTPQSTSTPTLLEGKKRSRNSFASKNTF 236

Query: 230 ESESNSA-VTDDKTVGVSSRRRRTSWTSLKEIAERSEDDNGRMANLTIPFSL 280
           E+ S SA V   KT   SS+RR+ SWTSLKEIA+ S+ DN ++ANLTIPF L
Sbjct: 237 ETPSMSARVEGAKTQSTSSKRRKKSWTSLKEIAQ-SKHDNSQVANLTIPFFL 287

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512033|gb|AFK44078.1| unknown [Lotus japonicus]

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 135/290 (46%), Positives = 182/290 (62%), Gaps = 13/290 (4%)

Query: 1   MGKRGRDRRASNLTSVS-HKPISLRDEKAGKKLVN-TTNVKSKLELEHLQRLAVWASSET 58
           MGKRG  + +S+L S S + PISLR+E  GK      +N+KS L ++HL++LAVWA+++T
Sbjct: 48  MGKRGGAKNSSHLGSRSQNNPISLREEATGKIQTKPASNIKSNLRVDHLKKLAVWATNDT 107

Query: 59  SVPSLAALFGHRLASANEVLGLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRRWK 118
            + SL A +G  LA+  E  G+ PD S  +CQRCETVL PGFN T+RIEK++ K R R K
Sbjct: 108 PILSLGAFYGQHLATVAEAAGVPPDSSLTTCQRCETVLHPGFNSTVRIEKSRSKVRHRHK 167

Query: 119 KPKTSMQNTVVYKCHFCSHHNLKRGTPVGHMKEICPMKAKPSSRPQCGSKSPL-KRSANT 177
               S QN +VY C+FC H NLK+GTP GH+K ICP K KPS   +   + P+   S+  
Sbjct: 168 SGNIS-QNNIVYTCNFCLHKNLKKGTPKGHLKGICPSKEKPSL--ELTPRRPITHESSKF 224

Query: 178 TKDTRSKDEVSKVDDEALPSISKNC-----VETPPLKSRITL-EGKKRRRKSG-NKNSAE 230
            K   SKDE +++D  A    +K+      + TP   S  TL EGKKR   S  +K + E
Sbjct: 225 EKGIVSKDEANEIDVFASRVAAKDVALVDGLPTPSCSSTPTLSEGKKRMGNSSTSKKAIE 284

Query: 231 SESNSAVTDDKTVGVSSRRRRTSWTSLKEIAERSEDDNGRMANLTIPFSL 280
           + S SA  + K +  +S+RRR SW SLK+IA+  E DN ++ANLTIPF L
Sbjct: 285 TASLSAKVEGKPLSTASKRRRKSWISLKDIAKGKEHDNNQVANLTIPFFL 334

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457658|ref|XP_004146565.1| PREDICTED: uncharacterized protein LOC101220608 [Cucumis sativus]

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 136/345 (39%), Positives = 177/345 (51%), Gaps = 69/345 (20%)

Query: 3   KRGRDRRASNLTSVSHKPISLRDEKAGKKLVNTTNVKSKLELEHLQRLAVWASSETSVPS 62
           K   +R +SN        I+LR E  GK     +N  +K+ L HL+ LA WAS + S+PS
Sbjct: 5   KSNTNRGSSNPGFGPQNSITLRQEATGKIKPKVSN-NAKVYLNHLENLATWASGQPSLPS 63

Query: 63  LAALFGHRLASANEVLGLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRRWKKPKT 122
           LAA FG RLA+A E L + PDPS F C RCET+LQPG NC IRIEKN  K RRR KK   
Sbjct: 64  LAAFFGQRLAAAAESLAVSPDPSLFLCARCETILQPGSNCNIRIEKNTAKKRRRHKKGSN 123

Query: 123 SMQNTVVYKCHFCSHHNLKRGTPVGHMK------------------------EICPM--- 155
             QN V Y CH+CS  N+KRGTP GHMK                        +I  M   
Sbjct: 124 LTQNVVAYYCHYCSCRNIKRGTPKGHMKVLYGTECVSKVKSVVVKDGKECENKIFTMDTP 183

Query: 156 KAKPSSRPQCGS-KSPLKRSANTTKDTRSKD--------EVSKVDDEAL------PSISK 200
           K  P +   C +  +P   S +TT+D  + D        ++S VD  A+      P+IS 
Sbjct: 184 KIPPLTTVDCLTIDTPAIPSLSTTRDDLTIDTSAISPTGDISVVDGPAISSPRTTPAISS 243

Query: 201 NCVETPPLKSRI-------------TLEG-------KKRRRKSGNKNSAESESNSAVTD- 239
               T   +S++             TL G       +++R+K  +KN  E ES S  T  
Sbjct: 244 TLSVTSISRSQVRDIPTLDAPATPLTLTGMTLLDSKRRKRKKPSSKNQTEPESCSGPTSH 303

Query: 240 -DKTVGVSSRRR-RTSWTSLKEIAERSEDDNGR--MANLTIPFSL 280
            + + G S R+R R SWTSLKEIA+R E++ G+  +A L IPFSL
Sbjct: 304 GETSEGTSKRKRNRKSWTSLKEIAQR-EEERGKQNVAGLAIPFSL 347

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071876|ref|XP_002303587.1| predicted protein [Populus trichocarpa] gi|222841019|gb|EEE78566.1| predicted protein [Populus trichocarpa]

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/204 (53%), Positives = 133/204 (65%), Gaps = 14/204 (6%)

Query: 1   MGKRGRDRRAS----NLTSVSHKPISLRDEKAGKKLVNTTNVKSKLELEHLQRLAVWASS 56
           MGKRG    +     N  + S+K  +L   K G       N +S L LEHLQ LA WA+ 
Sbjct: 1   MGKRGGGGASKKPPLNTLTASNKSFAL-SAKGGNH-----NPRSLLRLEHLQNLASWATE 54

Query: 57  ETSVPSLAALFGHRLASANEVLGLQPDPS-FFSCQRCETVLQPGFNCTIRIEKNQVKSRR 115
           E S+PSLAA FG + AS+ E LG+  DPS  F CQRC T L+PGFNCT +IEKNQ K+RR
Sbjct: 55  EASIPSLAAFFGRQFASSAEALGVPLDPSALFQCQRCGTFLRPGFNCTTQIEKNQSKARR 114

Query: 116 RWKKPKTSMQNTVVYKCHFCSHHNLKRGTPVGHMKEICPMKAKPSSRPQCGSKSPLKRSA 175
           R K+  TS +N VVYKCH C H NLKRGTP GHMKEICP K KP ++    +KS L++SA
Sbjct: 115 RHKRFSTSTKNNVVYKCHHCLHINLKRGTPKGHMKEICPPKPKPQAK---PTKSVLQKSA 171

Query: 176 NTTKDTRSKDEVSKVDDEALPSIS 199
           N  K T SK E+ K+D  ALP+IS
Sbjct: 172 NLEKGTSSKGEIVKIDGPALPAIS 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42568241|ref|NP_198943.3| uncharacterized protein [Arabidopsis thaliana] gi|28466943|gb|AAO44080.1| At5g41270 [Arabidopsis thaliana] gi|110735782|dbj|BAE99868.1| hypothetical protein [Arabidopsis thaliana] gi|332007276|gb|AED94659.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/265 (43%), Positives = 154/265 (58%), Gaps = 27/265 (10%)

Query: 30  KKLVNTT-----NVKSKLELEHLQRLAVWASS-ETSVPSLAALFGHRLASANEVLGLQPD 83
           KKL NT      N+KS L  EHL+ LA+W+S+ +T +PSLA+L G RLA+  E  G+  D
Sbjct: 7   KKLTNTQGGGGPNLKSVLRHEHLKNLALWSSTGDTPIPSLASLLGRRLAADTESTGITTD 66

Query: 84  PSFFSCQRCETVLQPGFNCTIRIEK---NQVKSRRRWKKPKTSM--QNTVVYKCHFCSHH 138
           P   SCQRCET+L+PGFNC +RIEK   N  K R R KK       QN VVY C+FCSH 
Sbjct: 67  PDLVSCQRCETILKPGFNCNVRIEKVSANVKKKRNRCKKSNNICFPQNNVVYHCNFCSHR 126

Query: 139 NLKRGTPVGHMKEICPMKAKP--SSRPQCGSKSPLKRSANTTKDTRSKDEVSKVDDEALP 196
           NLKRGT  G MKE+ P K K   SSRP+      +K+     ++ +S + +S  +     
Sbjct: 127 NLKRGTAKGQMKELYPFKPKTARSSRPK------IKKEMTMPQEIQS-NMLSSPERSVKD 179

Query: 197 SISKNCVETPPLKSRITLEGKKRRRKSGNKNSAESESNSAVTDDKTVGVSSRRRRTS-WT 255
            + +  V   P    +TLE  +R RK  +K  +E +S      +KTVG S++R+R S WT
Sbjct: 180 QVEEKSVGDTPKPMMLTLERDRRIRKPKSKKPSEPQS----VPEKTVGGSNKRKRKSPWT 235

Query: 256 SLKEIAERSEDDNGRMANLTIPFSL 280
           S+KEIAE   + + +  N  IPF L
Sbjct: 236 SMKEIAE--TNKSSKAGNFKIPFLL 258

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497646|gb|AFK36889.1| unknown [Lotus japonicus]

 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 88/164 (53%), Positives = 114/164 (69%), Gaps = 3/164 (1%)

Query: 1   MGKRGRDRRASNLTSVS-HKPISLRDEKAGKKLVN-TTNVKSKLELEHLQRLAVWASSET 58
           MGKRG  + +S+L S S + PISLR+E  GK      +N+KS L ++HL++LAVWA+++T
Sbjct: 48  MGKRGGAKNSSHLGSRSQNNPISLREEATGKIQTKPASNIKSNLRVDHLKKLAVWATNDT 107

Query: 59  SVPSLAALFGHRLASANEVLGLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRRWK 118
            + SL A +G RLA+  E  G+ PD S  +CQRCETVL PGFN T+RIEK++ K R R K
Sbjct: 108 PILSLGAFYGQRLATVAEAAGVPPDSSLTTCQRCETVLHPGFNSTVRIEKSRSKVRHRHK 167

Query: 119 KPKTSMQNTVVYKCHFCSHHNLKRGTPVGHMKEICPMKAKPSSR 162
               S QN +VY C+FC H NLK+GTP GH+K ICP K KPS R
Sbjct: 168 SGNIS-QNNIVYTCNFCLHKNLKKGTPKGHLKGICPSKEKPSLR 210

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
TAIR|locus:2155120	258	AT5G41270 "AT5G41270" [Arabido	0.860	0.934	0.386	2.4e-35

TAIR|locus:2155120 AT5G41270 "AT5G41270" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 104/269 (38%), Positives = 137/269 (50%)

Query:    27 KAG-KKLVNTT-----NVKSKLELEHLQRLAVWASS-ETSVPSLAALFGHRLASANEVLG 79
             K G KKL NT      N+KS L  EHL+ LA+W+S+ +T +PSLA+L G RLA+  E  G
Sbjct:     3 KRGPKKLTNTQGGGGPNLKSVLRHEHLKNLALWSSTGDTPIPSLASLLGRRLAADTESTG 62

Query:    80 LQPDPSFFSCQRCETVLQPGFNCTIRIEK---NQVKSRRRWKKPKTSM--QNTVVYKCHF 134
             +  DP   SCQRCET+L+PGFNC +RIEK   N  K R R KK       QN VVY C+F
Sbjct:    63 ITTDPDLVSCQRCETILKPGFNCNVRIEKVSANVKKKRNRCKKSNNICFPQNNVVYHCNF 122

Query:   135 CSHHNLKRGTPVGHMKEICPMKAKP--SSRPQCGSKSPLKRSANTTKDTRSKDEVSKVDD 192
             CSH NLKRGT  G MKE+ P K K   SSRP+      +K+     ++ +S + +S  + 
Sbjct:   123 CSHRNLKRGTAKGQMKELYPFKPKTARSSRPK------IKKEMTMPQEIQS-NMLSSPER 175

Query:   193 EALPSISKNCVETPPLKSRITLEXXXXXXXXXXXXXXXXXXXXXVTDDKTVGVXXXXXXX 252
                  + +  V   P    +TLE                        +KTVG        
Sbjct:   176 SVKDQVEEKSVGDTPKPMMLTLERDRRIRKPKSKKPSEPQS----VPEKTVGGSNKRKRK 231

Query:   253 XX-XXLKEIAERSEDDNGRMANLTIPFSL 280
                  +KEIAE ++  + +  N  IPF L
Sbjct:   232 SPWTSMKEIAETNK--SSKAGNFKIPFLL 258


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.128   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      280       248   0.00079  114 3  11 23  0.49    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  190 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.84u 0.12s 24.96t   Elapsed:  00:00:01
  Total cpu time:  24.84u 0.12s 24.96t   Elapsed:  00:00:01
  Start:  Fri May 10 07:49:47 2013   End:  Fri May 10 07:49:48 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.26	LOW CONFIDENCE prediction!
3rd Layer	3.1.26.5	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_III001048 hypothetical protein (335 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	280
pfam04032	84	pfam04032, Rpr2, RNAse P Rpr2/Rpp21/SNM1 subunit d	3e-09

>gnl|CDD|217854 pfam04032, Rpr2, RNAse P Rpr2/Rpp21/SNM1 subunit domain

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 16/96 (16%)

Query: 44  LEHLQRLAVWASSETSVPSLAALFGH--RLASANEVLGLQPDPSFFSCQRCETVLQPGFN 101
           + +L +LA   +S T  P L+  +    R  +    + L P      C++C T+L PG N
Sbjct: 3   INYLYQLAHELAS-TGNPELSRRYVKLMRKIAKKHRIRLPPSIKRKFCKKCGTLLIPGVN 61

Query: 102 CTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSH 137
           C +RIEK                   +V  C  C H
Sbjct: 62  CRVRIEKRPKNKV-------------LVITCLKCGH 84

This family contains a ribonuclease P subunit of humans and yeast. Other members of the family include the probable archaeal homologues. This family includes SNM1. It is a subunit of RNase MRP (mitochondrial RNA processing), a ribonucleoprotein endoribonuclease that has roles in both mitochondrial DNA replication and nuclear 5.8S rRNA processing. SNM1 is an RNA binding protein that binds the MRP RNA specifically. This subunit possibly binds the precursor tRNA. Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	280
PRK03954	121	ribonuclease P protein component 4; Validated	99.88
COG2023	105	RPR2 RNase P subunit RPR2 [Translation, ribosomal	99.87
PF04032	85	Rpr2: RNAse P Rpr2/Rpp21/SNM1 subunit domain; Inte	99.87
KOG4394	116	consensus RNase P subunit that is not also a subun	99.5

>PRK03954 ribonuclease P protein component 4; Validated

Probab=99.88  E-value=6.2e-23  Score=170.86  Aligned_cols=88  Identities=23%  Similarity=0.320  Sum_probs=77.3

Q ss_pred             ccHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh--CCCCCcccccCcCCCcccccCCceEEEEEecchhcccc
Q 023552           39 KSKLELEHLQRLAVWASSETSVPSLAALFGHRLASANEVL--GLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRR  116 (280)
Q Consensus        39 ~s~lRiehL~nLA~~A~~ea~~PsLSr~Y~r~l~~vseK~--~Lpp~~kR~iCKrC~tiLiPG~NcrVRI~nnkkK~Kkr  116 (280)
                      ..++||++||++|+.+..  ..|+||++|+..++.|++++  +|||+++|+||++|+++||||+||+|||+++       
T Consensus        17 iA~eRi~~L~~~A~~~~~--~~pelar~Yv~lar~Is~K~rirlp~~~KR~~CK~C~t~LiPG~n~~vRi~~~-------   87 (121)
T PRK03954         17 IARERIDTLFTLAERVFP--YSPELANRYVELALAVQQKAKVKLPRKWKRRYCKRCHSFLVPGVNARVRLRQK-------   87 (121)
T ss_pred             HHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHhhcCCCeeecCCceEEEEecC-------
Confidence            457899999999987663  36899999999999999999  7788888999999999999999999999931       


Q ss_pred             cCCCCCCCCCeEEEecCCCCCccccc
Q 023552          117 WKKPKTSMQNTVVYKCHFCSHHNLKR  142 (280)
Q Consensus       117 ~Kk~~~~~~n~VV~tCl~CG~~n~~r  142 (280)
                             ...+||++|++||++++|.
T Consensus        88 -------~~~~vvitCl~CG~~kR~P  106 (121)
T PRK03954         88 -------RMPHVVITCLECGHIMRYP  106 (121)
T ss_pred             -------CcceEEEECccCCCEEeec
Confidence                   1357999999999999975

>COG2023 RPR2 RNase P subunit RPR2 [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=2.1e-22  Score=164.49  Aligned_cols=85  Identities=22%  Similarity=0.271  Sum_probs=74.6

Q ss_pred             ccHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh--CCCCCcccccCcCCCcccccCCceEEEEEecchhcccc
Q 023552           39 KSKLELEHLQRLAVWASSETSVPSLAALFGHRLASANEVL--GLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRR  116 (280)
Q Consensus        39 ~s~lRiehL~nLA~~A~~ea~~PsLSr~Y~r~l~~vseK~--~Lpp~~kR~iCKrC~tiLiPG~NcrVRI~nnkkK~Kkr  116 (280)
                      .-.+||++||+||..+...  .|+||++|...+..|++++  .||++++|+||++|++||+||.||+|||.         
T Consensus         9 ia~eRi~~L~~lA~~~~~~--~~~laRrYv~la~~Is~K~rv~lp~~iKR~~CkkC~t~Lvpg~n~rvR~~---------   77 (105)
T COG2023           9 IAAERIDYLYSLAEETFRT--GPDLARRYVKLARRISMKYRVRLPREIKRTICKKCYTPLVPGKNARVRLR---------   77 (105)
T ss_pred             HHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccccCHHHHHHhccccCcccccCcceEEEEc---------
Confidence            4467788888887665542  2799999999999999999  78999999999999999999999999999         


Q ss_pred             cCCCCCCCCCeEEEecCCCCCccccc
Q 023552          117 WKKPKTSMQNTVVYKCHFCSHHNLKR  142 (280)
Q Consensus       117 ~Kk~~~~~~n~VV~tCl~CG~~n~~r  142 (280)
                              .+.|+++|+.||+++++.
T Consensus        78 --------~~~v~vtC~~CG~~~R~p   95 (105)
T COG2023          78 --------KGRVVVTCLECGTIRRYP   95 (105)
T ss_pred             --------CCeEEEEecCCCcEEEec
Confidence                    467999999999999985

>PF04032 Rpr2: RNAse P Rpr2/Rpp21/SNM1 subunit domain; InterPro: IPR007175 This family contains a ribonuclease P subunit of human and yeast

Probab=99.87  E-value=4.8e-22  Score=150.41  Aligned_cols=82  Identities=28%  Similarity=0.565  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHH-HHhhcCCCChHHHHHHHHHHHHHHHh--CCCCCcccccCcCCCcccccCCceEEEEEecchhcccccC
Q 023552           42 LELEHLQRLAV-WASSETSVPSLAALFGHRLASANEVL--GLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRRWK  118 (280)
Q Consensus        42 lRiehL~nLA~-~A~~ea~~PsLSr~Y~r~l~~vseK~--~Lpp~~kR~iCKrC~tiLiPG~NcrVRI~nnkkK~Kkr~K  118 (280)
                      +|++|||++|+ +..  ...|+||+.|+++|..+++++  +|||+++++||++|+++||||+||+|||+++         
T Consensus         1 ~Ri~~L~~~a~~~~~--~~~~~lsr~y~~~~~~i~~k~~~~l~~~~kr~~Ck~C~~~liPG~~~~vri~~~---------   69 (85)
T PF04032_consen    1 QRINFLYQAAHLLLA--DGSPSLSRHYMKLMRKISKKTRIRLPPEIKRTICKKCGSLLIPGVNCSVRIRKK---------   69 (85)
T ss_dssp             HHHHHHHHHHH-HHC--CC-HHHHHHHHHHHHHHHHHCT---STTCCCTB-TTT--B--CTTTEEEEEE-----------
T ss_pred             CHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhCCCCChHHhcccccCCCCEEeCCCccEEEEEec---------
Confidence            69999999999 433  457999999999999999998  6789999999999999999999999999931         


Q ss_pred             CCCCCCCCeEEEecCCCCC
Q 023552          119 KPKTSMQNTVVYKCHFCSH  137 (280)
Q Consensus       119 k~~~~~~n~VV~tCl~CG~  137 (280)
                         ....+.|+|+|+.|||
T Consensus        70 ---~~~~~~l~~~C~~C~~   85 (85)
T PF04032_consen   70 ---KKKKNFLVYTCLNCGH   85 (85)
T ss_dssp             ----SSS-EEEEEETTTTE
T ss_pred             ---CCCCCEEEEEccccCC
Confidence               1126899999999996

Other members of the family include the probable archaeal homologues. This subunit possibly binds the precursor tRNA [].; PDB: 2K3R_A 2KI7_B 2ZAE_B 1X0T_A.

>KOG4394 consensus RNase P subunit that is not also a subunit of RNase MRP, involved in pre-tRNA processing [RNA processing and modification]

Probab=99.50  E-value=2e-14  Score=118.44  Aligned_cols=105  Identities=19%  Similarity=0.228  Sum_probs=88.0

Q ss_pred             CCCcccHHHHHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHHHHHh--CCCCCcccccCcCCCcccccCCceEEEEEecch
Q 023552           35 TTNVKSKLELEHLQRLAVWASSETSVP-SLAALFGHRLASANEVL--GLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQV  111 (280)
Q Consensus        35 ~~n~~s~lRiehL~nLA~~A~~ea~~P-sLSr~Y~r~l~~vseK~--~Lpp~~kR~iCKrC~tiLiPG~NcrVRI~nnkk  111 (280)
                      +.|.+.+.|+.+||+.++....+...+ +|||.|..-++.|++++  ++.|+++|+||+.|+++|+||.+|++|-+.-.+
T Consensus         5 ik~~d~f~RlnyLYQas~~~~r~~qe~t~LaR~Yi~t~~~Iskk~v~r~~P~iKRTiCkgC~sLLvpgk~c~ir~~~~~r   84 (116)
T KOG4394|consen    5 IKNQDHFHRLNYLYQASAYQTRARQEATPLARNYIKTMDLISKKTVTRLLPTIKRTICKGCHSLLVPGKKCEIRSDGALR   84 (116)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhhhhhhCchHHHHHHhchhhhccCCcceeEeecchhh
Confidence            457789999999999999877655554 79999999999999998  888999999999999999999999999975322


Q ss_pred             hcccccCCCCCCCCCeEEEecCCCCCcccccCCCCCc
Q 023552          112 KSRRRWKKPKTSMQNTVVYKCHFCSHHNLKRGTPVGH  148 (280)
Q Consensus       112 K~Kkr~Kk~~~~~~n~VV~tCl~CG~~n~~rGt~k~~  148 (280)
                      +         .-..+.|+.+|..|..-.+|--+.-|-
T Consensus        85 ~---------~~g~~~v~~~c~~c~~~~Rf~~~~~~~  112 (116)
T KOG4394|consen   85 V---------MCGCGTVKRFCIGCDPNYRFYSEREGN  112 (116)
T ss_pred             h---------CCCcchHHHHhhccCcccccccCcccc
Confidence            2         224788999999999999987665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	280
1x0t_A	120	Ribonuclease P protein component 4; pyrococcus hor	99.88
2k3r_A	123	Ribonuclease P protein component 4; PFU RPP21, RNA	99.87

>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B

Probab=99.88  E-value=9.3e-23  Score=166.68  Aligned_cols=91  Identities=21%  Similarity=0.237  Sum_probs=79.5

Q ss_pred             ccHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh--CCCCCcccccCcCCCcccccCCceEEEEEecchhcccc
Q 023552           39 KSKLELEHLQRLAVWASSETSVPSLAALFGHRLASANEVL--GLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRR  116 (280)
Q Consensus        39 ~s~lRiehL~nLA~~A~~ea~~PsLSr~Y~r~l~~vseK~--~Lpp~~kR~iCKrC~tiLiPG~NcrVRI~nnkkK~Kkr  116 (280)
                      ..++||+|||++|+++.  ...|+||++|+..+..+++++  +|||+++|+||++|+++||||+||+|||+++       
T Consensus        18 ia~~Ri~~L~~~A~~~~--~~~p~lSr~Y~~~~~~is~k~~irlp~~~KR~~Ck~C~s~LiPG~t~~vri~~~-------   88 (120)
T 1x0t_A           18 IAIERIDTLFTLAERVA--RYSPDLAKRYVELALEIQKKAKVKIPRKWKRRYCKRCHTFLIPGVNARVRLRTK-------   88 (120)
T ss_dssp             HHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHTCCCCTTTTTSBCTTTCCBCCBTTTEEEEEECS-------
T ss_pred             HHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHHHHHhccCCCHHHHHHhccCCCCEeECCCceEEEEecC-------
Confidence            45899999999999874  356899999999999999999  7788888999999999999999999999942       


Q ss_pred             cCCCCCCCCCeEEEecCCCCCcccccCCC
Q 023552          117 WKKPKTSMQNTVVYKCHFCSHHNLKRGTP  145 (280)
Q Consensus       117 ~Kk~~~~~~n~VV~tCl~CG~~n~~rGt~  145 (280)
                             ....|||+|+.||++++|.=..
T Consensus        89 -------~~~~vv~tCl~Cg~~kR~p~~~  110 (120)
T 1x0t_A           89 -------RMPHVVITCLECGYIMRYPYLR  110 (120)
T ss_dssp             -------SSCEEEEEETTTCCEEEEECC-
T ss_pred             -------CccEEEEECCCCCCEEEEccCc
Confidence                   1248999999999999987543

>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B

Probab=99.87  E-value=1.9e-22  Score=165.85  Aligned_cols=91  Identities=21%  Similarity=0.271  Sum_probs=78.7

Q ss_pred             ccHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh--CCCCCcccccCcCCCcccccCCceEEEEEecchhcccc
Q 023552           39 KSKLELEHLQRLAVWASSETSVPSLAALFGHRLASANEVL--GLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRR  116 (280)
Q Consensus        39 ~s~lRiehL~nLA~~A~~ea~~PsLSr~Y~r~l~~vseK~--~Lpp~~kR~iCKrC~tiLiPG~NcrVRI~nnkkK~Kkr  116 (280)
                      ..++||++||++|+++..  ..|+||++|+..+..|++++  +|||+++|+||++|+++||||+||+|||+++       
T Consensus        13 ia~~Ri~~L~~~A~~~~~--~~p~LSr~Y~~~~~~Is~K~~irlp~~~KR~~Ck~C~s~LIPG~t~~vri~~~-------   83 (123)
T 2k3r_A           13 IAKERIDILFSLAERVFP--YSPELAKRYVELALLVQQKAKVKIPRKWKRRYCKKCHAFLVPGINARVRLRQK-------   83 (123)
T ss_dssp             --CHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHTCCCSSTTTTSBCTTTCCBCCBTTTEEEEEECS-------
T ss_pred             HHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHhccCCCHHHHHHhccCCCCEeECCCceEEEEecC-------
Confidence            468999999999998742  46899999999999999999  6788888999999999999999999999942       


Q ss_pred             cCCCCCCCCCeEEEecCCCCCcccccCCC
Q 023552          117 WKKPKTSMQNTVVYKCHFCSHHNLKRGTP  145 (280)
Q Consensus       117 ~Kk~~~~~~n~VV~tCl~CG~~n~~rGt~  145 (280)
                             ....|||+|+.||++++|.=..
T Consensus        84 -------~k~~vv~tCl~Cg~~kR~p~~~  105 (123)
T 2k3r_A           84 -------RMPHIVVKCLECGHIMRYPYIK  105 (123)
T ss_dssp             -------SSCEEEEEETTTTEEEEEECCC
T ss_pred             -------CccEEEEECCCCCCEEEEecCc
Confidence                   1358999999999999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00