Citrus Sinensis ID: 023582

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Protein Sequence
MAMEMQKNSMYIEQNDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISKIFIYSWIIIN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccEEEEHHHHHHHHHHHHHHHEEEEccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHEEEEEEcccccccccccccEEccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEEccccccEEEEEEEEEEc
Coil and Loop (DISEMBL)
mamemqknsmyieqndpegdirkdfldddgrakrtgtwVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTllsdcyrspdpvtgkrnytYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVkrsncfhrhghhvkcytsnnplMIIFACIQIVLSqipnfhklSWLSILAAVMSFAYSSIGIGLSIAKvigdgphattltgttvgvdvsASEKVWRAFQAIGDVAFAYAFSTVLVEIqaspiskifIYSWIIIN
Flexible Loop (DISEMBL)
mamemqknsmyieqndpegdIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEiqaspiskifiysWIIIN
Low Complexity Region (SEG)
MAMEMQKNSMYIEQNDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAttltgttvgvDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPiskifiyswiiiN
Disordered region (IsUnstruct)
********************************KRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISKIFIYSWIII*
Disordered Region (DISOPRED)
*********************************RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISKIFIYSWIIIN
Disordered Region (DISEMBL)
********SMYIEQNDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISKIFIYSWIIIN
Disordered Region (DISPRO)
*******************************AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISKIFIYSWIIIN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMEMQKNSMYIEQNDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISKIFIYSWIIIN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	280	2.2.26 [Sep-21-2011]
P92934	481	Amino acid permease 6 OS=	yes	no	0.921	0.536	0.802	1e-116
Q42400	485	Amino acid permease 1 OS=	no	no	0.875	0.505	0.712	1e-105
O80592	475	Amino acid permease 8 OS=	no	no	0.892	0.526	0.696	3e-99
Q38967	493	Amino acid permease 2 OS=	no	no	0.85	0.482	0.631	8e-87
Q9FN04	466	Amino acid permease 4 OS=	no	no	0.85	0.510	0.631	1e-86
Q39134	476	Amino acid permease 3 OS=	no	no	0.857	0.504	0.618	7e-86
Q8GUM3	480	Amino acid permease 5 OS=	no	no	0.903	0.527	0.553	6e-81
Q9FF99	467	Probable amino acid perme	no	no	0.896	0.537	0.473	1e-59
Q9SR44	441	Lysine histidine transpor	no	no	0.846	0.537	0.308	4e-21
Q9FKS8	446	Lysine histidine transpor	no	no	0.764	0.479	0.327	3e-20

>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1

 Score =  418 bits (1074), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/263 (80%), Positives = 236/263 (89%), Gaps = 5/263 (1%)

Query: 6   QKNSMYIEQNDPE---GDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIA 62
           +K SM++EQ+ PE   GD  K+F D+DGR KRTGTW+T SAHIITAVIGSGVLSLAWAIA
Sbjct: 3   KKKSMFVEQSFPEHEIGDTNKNF-DEDGRDKRTGTWMTGSAHIITAVIGSGVLSLAWAIA 61

Query: 63  QLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCG 122
           QLGWVAGPAVLMAFSFITY+TST+L+DCYRSPDPVTGKRNYTYM+VVR+ LGGR VQLCG
Sbjct: 62  QLGWVAGPAVLMAFSFITYFTSTMLADCYRSPDPVTGKRNYTYMEVVRSYLGGRKVQLCG 121

Query: 123 LAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ 182
           LAQYGNLIG+TIGYTITASISMVAVKRSNCFH++GH+VKC TSN P MIIFA IQI+LSQ
Sbjct: 122 LAQYGNLIGITIGYTITASISMVAVKRSNCFHKNGHNVKCATSNTPFMIIFAIIQIILSQ 181

Query: 183 IPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHA-TTLTGTTVGVDVSASEKVW 241
           IPNFH LSWLSILAAVMSF Y+SIG+GLSIAK  G G H  TTLTG TVG+DVS +EK+W
Sbjct: 182 IPNFHNLSWLSILAAVMSFCYASIGVGLSIAKAAGGGEHVRTTLTGVTVGIDVSGAEKIW 241

Query: 242 RAFQAIGDVAFAYAFSTVLVEIQ 264
           R FQAIGD+AFAYA+STVL+EIQ
Sbjct: 242 RTFQAIGDIAFAYAYSTVLIEIQ 264

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for tryptophan, proline, and neutral and acidic amino acids. Have an affinity for aspartate in a physiological range. Involved in the uptake of amino acids diffusing out of the xylem tracheids into the xylem parenchyma.
Arabidopsis thaliana (taxid: 3702)

>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1

 Score =  380 bits (975), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/250 (71%), Positives = 216/250 (86%), Gaps = 5/250 (2%)

Query: 15  NDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLM 74
           +DP  ++     D+DGR KRTGTW+TASAHIITAVIGSGVLSLAWAIAQLGW+AG ++L+
Sbjct: 23  SDPTKNV-----DEDGREKRTGTWLTASAHIITAVIGSGVLSLAWAIAQLGWIAGTSILL 77

Query: 75  AFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTI 134
            FSFITY+TST+L+DCYR+PDPVTGKRNYTYMDVVR+ LGGR VQLCG+AQYGNLIGVT+
Sbjct: 78  IFSFITYFTSTMLADCYRAPDPVTGKRNYTYMDVVRSYLGGRKVQLCGVAQYGNLIGVTV 137

Query: 135 GYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSI 194
           GYTITASIS+VAV +SNCFH  GH   C  SN P M +F  IQ++LSQIPNFHKLS+LSI
Sbjct: 138 GYTITASISLVAVGKSNCFHDKGHTADCTISNYPYMAVFGIIQVILSQIPNFHKLSFLSI 197

Query: 195 LAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAY 254
           +AAVMSF Y++IGIGL+IA V G     T++TGT VGVDV+A++K+WR+FQA+GD+AFAY
Sbjct: 198 MAAVMSFTYATIGIGLAIATVAGGKVGKTSMTGTAVGVDVTAAQKIWRSFQAVGDIAFAY 257

Query: 255 AFSTVLVEIQ 264
           A++TVL+EIQ
Sbjct: 258 AYATVLIEIQ 267

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, glutamate and neutral amino acids. Reduced affinities for asparagine and valine. Involved in amino acid uptake from the apoplastic cavity into the embryo cells for storage protein accumulation and in root amino acid uptake.

Arabidopsis thaliana (taxid: 3702)

>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1

 Score =  361 bits (927), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 177/254 (69%), Positives = 208/254 (81%), Gaps = 4/254 (1%)

Query: 15  NDPE----GDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGP 70
           N+P     GD     +DDDGR KRTGT+ TASAHIITAVIGSGVLSLAWAIAQLGWVAG 
Sbjct: 5   NNPSAVESGDAAVKSVDDDGREKRTGTFWTASAHIITAVIGSGVLSLAWAIAQLGWVAGT 64

Query: 71  AVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLI 130
            VL+AF+ ITYYTSTLL+DCYRSPD +TG RNY YM VVR+ LGG+ VQLCG+AQY NL+
Sbjct: 65  TVLVAFAIITYYTSTLLADCYRSPDSITGTRNYNYMGVVRSYLGGKKVQLCGVAQYVNLV 124

Query: 131 GVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLS 190
           GVTIGYTITASIS+VA+ +SNC+H  GH  KC  SN P M  F  +QI+LSQ+PNFHKLS
Sbjct: 125 GVTIGYTITASISLVAIGKSNCYHDKGHKAKCSVSNYPYMAAFGIVQIILSQLPNFHKLS 184

Query: 191 WLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDV 250
           +LSI+AAVMSF+Y+SIGIGL+IA V       T LTGT +GVDV+ASEKVW+ FQAIGD+
Sbjct: 185 FLSIIAAVMSFSYASIGIGLAIATVASGKIGKTELTGTVIGVDVTASEKVWKLFQAIGDI 244

Query: 251 AFAYAFSTVLVEIQ 264
           AF+YAF+T+L+EIQ
Sbjct: 245 AFSYAFTTILIEIQ 258

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate, aspartate and neutral and acidic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1

 Score =  320 bits (820), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 151/239 (63%), Positives = 192/239 (80%), Gaps = 1/239 (0%)

Query: 26  LDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTST 85
            DDDGR KRTGT  TASAHIITAVIGSGVLSLAWAIAQLGW+AGPAV++ FS +T Y+ST
Sbjct: 38  FDDDGRLKRTGTVWTASAHIITAVIGSGVLSLAWAIAQLGWIAGPAVMLLFSLVTLYSST 97

Query: 86  LLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMV 145
           LLSDCYR+ D V+GKRNYTYMD VR+ LGG   ++CGL QY NL G+ IGYTI ASISM+
Sbjct: 98  LLSDCYRTGDAVSGKRNYTYMDAVRSILGGFKFKICGLIQYLNLFGIAIGYTIAASISMM 157

Query: 146 AVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSS 205
           A+KRSNCFH+ G    C+ S+NP MI+F   +I+LSQ+P+F ++ W+SI+AAVMSF YS+
Sbjct: 158 AIKRSNCFHKSGGKDPCHMSSNPYMIVFGVAEILLSQVPDFDQIWWISIVAAVMSFTYSA 217

Query: 206 IGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQ 264
           IG+ L I +V  +G    +LTG ++G  V+ ++K+WR FQA+GD+AFAY++S VL+EIQ
Sbjct: 218 IGLALGIVQVAANGVFKGSLTGISIGT-VTQTQKIWRTFQALGDIAFAYSYSVVLIEIQ 275

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, arginine, glutamate and neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine. Has a much higher affinity for basic amino acids as compared with AAP1. May function in xylem-to-phloem transfer and in uptake of amino acids assimilated in the green silique tissue.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1

 Score =  320 bits (819), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 151/239 (63%), Positives = 192/239 (80%), Gaps = 1/239 (0%)

Query: 26  LDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTST 85
            DDDGR KR+GT  TASAHIITAVIGSGVLSLAWAI QLGW+AGP V++ FSF+TYY+ST
Sbjct: 11  FDDDGRLKRSGTVWTASAHIITAVIGSGVLSLAWAIGQLGWIAGPTVMLLFSFVTYYSST 70

Query: 86  LLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMV 145
           LLSDCYR+ DPV+GKRNYTYMD VR+ LGG   ++CGL QY NL G+T+GYTI ASISM+
Sbjct: 71  LLSDCYRTGDPVSGKRNYTYMDAVRSILGGFRFKICGLIQYLNLFGITVGYTIAASISMM 130

Query: 146 AVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSS 205
           A+KRSNCFH  G    C+ S+NP MI+F   +I+LSQI +F ++ WLSI+AA+MSF YS+
Sbjct: 131 AIKRSNCFHESGGKNPCHMSSNPYMIMFGVTEILLSQIKDFDQIWWLSIVAAIMSFTYSA 190

Query: 206 IGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQ 264
           IG+ L I +V  +G    +LTG ++G  V+ ++K+WR FQA+GD+AFAY++S VL+EIQ
Sbjct: 191 IGLALGIIQVAANGVVKGSLTGISIGA-VTQTQKIWRTFQALGDIAFAYSYSVVLIEIQ 248

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2

 Score =  317 bits (811), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 149/241 (61%), Positives = 194/241 (80%), Gaps = 1/241 (0%)

Query: 24  DFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYT 83
            +LDDDG+ KRTG+  TASAHIITAVIGSGVLSLAWA AQLGW+AGP V++ FS +TY+T
Sbjct: 20  KYLDDDGKNKRTGSVWTASAHIITAVIGSGVLSLAWATAQLGWLAGPVVMLLFSAVTYFT 79

Query: 84  STLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASIS 143
           S+LL+ CYRS DP++GKRNYTYMD VR++LGG  V LCG+ QY N+ GV IGYTI ++IS
Sbjct: 80  SSLLAACYRSGDPISGKRNYTYMDAVRSNLGGVKVTLCGIVQYLNIFGVAIGYTIASAIS 139

Query: 144 MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 203
           M+A+KRSNCFH+ G    C+ ++NP MI F  +QI+ SQIP+F +L WLSILAAVMSF Y
Sbjct: 140 MMAIKRSNCFHKSGGKDPCHMNSNPYMIAFGLVQILFSQIPDFDQLWWLSILAAVMSFTY 199

Query: 204 SSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 263
           SS G+ L IA+V+ +G    +LTG ++G  V+ ++K+WR FQA+GD+AFAY++S +L+EI
Sbjct: 200 SSAGLALGIAQVVVNGKVKGSLTGISIGA-VTETQKIWRTFQALGDIAFAYSYSIILIEI 258

Query: 264 Q 264
           Q
Sbjct: 259 Q 259

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for GABA, tryptophan and both neutral and basic amino acids. High affinity transport of cationic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1

 Score =  300 bits (769), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 145/262 (55%), Positives = 196/262 (74%), Gaps = 9/262 (3%)

Query: 12  IEQNDPEGDI----RKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWV 67
           + QN  + D+      D  DDDGR KRTGT  TASAHIITAVIGSGVLSLAWA+AQ+GW+
Sbjct: 2   VVQNVQDLDVLPKHSSDSFDDDGRPKRTGTVWTASAHIITAVIGSGVLSLAWAVAQIGWI 61

Query: 68  AGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYG 127
            GP  ++ FSF+T+YTSTLL  CYRS D VTGKRNYTYMD + ++LGG  V++CG+ QY 
Sbjct: 62  GGPVAMLLFSFVTFYTSTLLCSCYRSGDSVTGKRNYTYMDAIHSNLGGIKVKVCGVVQYV 121

Query: 128 NLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFH 187
           NL G  IGYTI ++IS+VA++R++C   +G +  C+ + N  MI F  +QI+ SQIP+F 
Sbjct: 122 NLFGTAIGYTIASAISLVAIQRTSCQQMNGPNDPCHVNGNVYMIAFGIVQIIFSQIPDFD 181

Query: 188 KLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGV-----DVSASEKVWR 242
           +L WLSI+AAVMSFAYS+IG+GL ++KV+ +     +LTG TVG       V++S+K+WR
Sbjct: 182 QLWWLSIVAAVMSFAYSAIGLGLGVSKVVENKEIKGSLTGVTVGTVTLSGTVTSSQKIWR 241

Query: 243 AFQAIGDVAFAYAFSTVLVEIQ 264
            FQ++G++AFAY++S +L+EIQ
Sbjct: 242 TFQSLGNIAFAYSYSMILIEIQ 263

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate and both neutral and basic amino acids. Reduced affinities for asparagine and valine. High affinity transport of the cationic amino acids arginine and lysine, but not of histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1

 Score =  230 bits (586), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/260 (47%), Positives = 169/260 (65%), Gaps = 9/260 (3%)

Query: 10  MYIEQNDPEGDIRKDFLD-DDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVA 68
           M I+++D    I    L   D    RTGT  TA AHIIT VIG+GVLSLAWA A+LGW+A
Sbjct: 1   MDIKEDDESRVITPTELQLHDSVTARTGTLWTAVAHIITGVIGAGVLSLAWATAELGWIA 60

Query: 69  GPAVLMAFSFITYYTSTLLSDCYRSPDPVTGK-RNYTYMDVVRASLGGRSVQLCGLAQYG 127
           GPA L+AF+ +T  ++ LLSDCYR PDP  G  R  +Y   V+  LG ++  +CG+  Y 
Sbjct: 61  GPAALIAFAGVTLLSAFLLSDCYRFPDPNNGPLRLNSYSQAVKLYLGKKNEIVCGVVVYI 120

Query: 128 NLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCY--TSNNPLMIIFACIQIVLSQIPN 185
           +L G  I YTI  +    A+ +SNC+HR+GH+  C    +NN  M++F   QI +SQIPN
Sbjct: 121 SLFGCGIAYTIVIATCSRAIMKSNCYHRNGHNATCSYGDNNNYFMVLFGLTQIFMSQIPN 180

Query: 186 FHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDV-SASEKVWRAF 244
           FH + WLS++AA+MSF YS IGIGL++ K+I +      + G+  G+   +  EKVW  F
Sbjct: 181 FHNMVWLSLVAAIMSFTYSFIGIGLALGKIIEN----RKIEGSIRGIPAENRGEKVWIVF 236

Query: 245 QAIGDVAFAYAFSTVLVEIQ 264
           QA+G++AF+Y FS +L+EIQ
Sbjct: 237 QALGNIAFSYPFSIILLEIQ 256

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1

 Score =  102 bits (253), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 133/266 (50%), Gaps = 29/266 (10%)

Query: 10  MYIEQNDPEGD--IRKDFLDD--DGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLG 65
           M   Q+ P  D   ++  +DD     + R   W  ++ H +TA++G+GVLSL +A++ LG
Sbjct: 1   MEKSQSSPTKDASTKQKNVDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSNLG 60

Query: 66  WVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGR-SVQLCGLA 124
           W  G  +++    IT+YT   L    +  + V GKR   Y ++ + + G +  + +    
Sbjct: 61  WGPGVTIMIMSWLITFYT---LWQMVQMHEMVPGKRFDRYHELGQHAFGEKLGLWIVVPQ 117

Query: 125 QYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNN----PLMIIFACIQIVL 180
           Q    +GV I Y +T   S+  +          H + C    N      ++IFA I  VL
Sbjct: 118 QLIVEVGVDIVYMVTGGKSLKKI----------HDLLCTDCKNIRTTYWIMIFASIHFVL 167

Query: 181 SQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKV 240
           + +PNF+ +S +S+ AAVMS +YS+I    S+ K +      ++   TT G        V
Sbjct: 168 AHLPNFNSISIVSLAAAVMSLSYSTIAWATSVKKGVHPNVDYSSRASTTSG-------NV 220

Query: 241 WRAFQAIGDVAFAYAFSTVLVEIQAS 266
           +    A+GDVAFAYA   V++EIQA+
Sbjct: 221 FNFLNALGDVAFAYAGHNVVLEIQAT 246

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 124/241 (51%), Gaps = 27/241 (11%)

Query: 32  AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCY 91
           + R   W  ++ H +TA++G+GVL L +A++QLGW  G AVL+    IT YT   + + +
Sbjct: 32  SSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGPGIAVLVLSWVITLYTLWQMVEMH 91

Query: 92  RSPDPVTGKRNYTYMDVVRASLGGR-SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRS 150
              + V GKR   Y ++ + + G +  + +    Q    IGV I Y +T   S+      
Sbjct: 92  ---EMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSL------ 142

Query: 151 NCFHRHGHHVKCYTSNNPL-----MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSS 205
               +  H + C     P+     ++IFA +  VLS +PNF+ +S +S+ AAVMS +YS+
Sbjct: 143 ----KKFHELVC-DDCKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYST 197

Query: 206 IGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQA 265
           I    S +K + +         TT G        V+  F  +GDVAFAYA   V++EIQA
Sbjct: 198 IAWASSASKGVQEDVQYGYKAKTTAGT-------VFNFFSGLGDVAFAYAGHNVVLEIQA 250

Query: 266 S 266
           +
Sbjct: 251 T 251

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
31455393	481	amino acid permease 6 [Brassica napus]	0.946	0.550	0.802	1e-122
255537896	484	amino acid transporter, putative [Ricinu	0.939	0.543	0.783	1e-120
297795723	507	hypothetical protein ARALYDRAFT_495022 [	0.975	0.538	0.770	1e-120
363814354	479	uncharacterized protein LOC100777963 [Gl	0.917	0.536	0.816	1e-119
356515653	479	PREDICTED: amino acid permease 6-like [G	0.917	0.536	0.816	1e-118
388508848	482	unknown [Medicago truncatula]	0.928	0.539	0.805	1e-118
357466761	482	Amino acid permease [Medicago truncatula	0.928	0.539	0.805	1e-118
284519840	483	amino acid permease 6 [Populus tremula x	0.935	0.542	0.783	1e-117
357436349	472	Amino acid transporter [Medicago truncat	0.907	0.538	0.808	1e-116
224063403	488	amino acid permease [Populus trichocarpa	0.939	0.538	0.762	1e-116

>gi|31455393|emb|CAD92450.1| amino acid permease 6 [Brassica napus]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/274 (80%), Positives = 243/274 (88%), Gaps = 9/274 (3%)

Query: 5   MQKNSMYIEQ---NDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAI 61
           M+K SM+IEQ   +   GD+ K+F DDDGR KRTGTW+T SAHIITAVIGSGVLSLAWAI
Sbjct: 1   MEKKSMFIEQSFTDHKSGDMNKNF-DDDGRQKRTGTWMTGSAHIITAVIGSGVLSLAWAI 59

Query: 62  AQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLC 121
           AQLGWVAGPAVLMAFSFITY+TST+L+DCYRSPDPVTGKRNYTYM+VVR+ LGGR V LC
Sbjct: 60  AQLGWVAGPAVLMAFSFITYFTSTMLADCYRSPDPVTGKRNYTYMEVVRSYLGGRKVMLC 119

Query: 122 GLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLS 181
           GLAQYGNLIG+TIGYTITASISMVAVKRSNCFH++GH+VKC TSN P MIIFACIQIVLS
Sbjct: 120 GLAQYGNLIGITIGYTITASISMVAVKRSNCFHKNGHNVKCSTSNTPFMIIFACIQIVLS 179

Query: 182 QIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHA-TTLTGTTVGVDVSASEKV 240
           QIPNFH LSWLSILAAVMSF+Y+SIGIGLSIAKV G G HA T LTG TVGVDV+ SEKV
Sbjct: 180 QIPNFHNLSWLSILAAVMSFSYASIGIGLSIAKVAGGGVHARTALTGVTVGVDVTGSEKV 239

Query: 241 WRAFQAIGDVAFAYAFSTVLVEIQ----ASPISK 270
           WR FQA+GD+AFAYA+STVL+EIQ    ASP S+
Sbjct: 240 WRTFQAVGDIAFAYAYSTVLIEIQDTLKASPPSE 273

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537896|ref|XP_002510013.1| amino acid transporter, putative [Ricinus communis] gi|223550714|gb|EEF52200.1| amino acid transporter, putative [Ricinus communis]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/268 (78%), Positives = 240/268 (89%), Gaps = 5/268 (1%)

Query: 1   MAMEMQKNSMYIEQNDPEG----DIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLS 56
           MA EMQ +SMY+EQ D EG     +RK+ +DDDGR KRTGTW+TASAHIITAVIGSGVLS
Sbjct: 1   MAKEMQPSSMYLEQVDVEGYENGGVRKN-VDDDGRPKRTGTWLTASAHIITAVIGSGVLS 59

Query: 57  LAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGR 116
           LAWAIAQLGWVAGP +LMAFSFIT++TSTLL+D YRSPDPVTGKRNYTYMD VRA+LGG 
Sbjct: 60  LAWAIAQLGWVAGPVILMAFSFITFFTSTLLADSYRSPDPVTGKRNYTYMDAVRANLGGW 119

Query: 117 SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACI 176
            V  CG++QY NL+G+T+GYTITASISMVAVKRSNCFHRHGH  KC+TSNNP MIIFACI
Sbjct: 120 KVTFCGISQYANLVGITVGYTITASISMVAVKRSNCFHRHGHAAKCHTSNNPYMIIFACI 179

Query: 177 QIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSA 236
           QI+LSQIPNFHKLSWLS+LAAVMSFAYSSIG+GLSIAKV G     T++TGTTVGVDV+A
Sbjct: 180 QIILSQIPNFHKLSWLSVLAAVMSFAYSSIGLGLSIAKVAGGEHVRTSITGTTVGVDVTA 239

Query: 237 SEKVWRAFQAIGDVAFAYAFSTVLVEIQ 264
           ++K+WRAFQ+IGD+AFAYA+STVL+EIQ
Sbjct: 240 AQKIWRAFQSIGDIAFAYAYSTVLIEIQ 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795723|ref|XP_002865746.1| hypothetical protein ARALYDRAFT_495022 [Arabidopsis lyrata subsp. lyrata] gi|297311581|gb|EFH42005.1| hypothetical protein ARALYDRAFT_495022 [Arabidopsis lyrata subsp. lyrata]

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/283 (77%), Positives = 247/283 (87%), Gaps = 10/283 (3%)

Query: 6   QKNSMYIEQN--DPE-GDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIA 62
           +K SM +EQ+  D E GDI K+F DDDGR KR+GTW+T SAHIITAVIGSGVLSLAWAIA
Sbjct: 3   KKKSMSVEQSYTDHEIGDINKNF-DDDGREKRSGTWMTGSAHIITAVIGSGVLSLAWAIA 61

Query: 63  QLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCG 122
           QLGWVAGPAVLMAFSFITY+TST+L+DCYRSPDPVTGKRNYTYM+VVR+ LGGR VQLCG
Sbjct: 62  QLGWVAGPAVLMAFSFITYFTSTMLADCYRSPDPVTGKRNYTYMEVVRSYLGGRKVQLCG 121

Query: 123 LAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ 182
           LAQYGNLIG+TIGYTITASISMVAVKRSNCFH++GH+VKC TSN P MI+FA IQI+LSQ
Sbjct: 122 LAQYGNLIGITIGYTITASISMVAVKRSNCFHKNGHNVKCATSNTPFMIVFAIIQIILSQ 181

Query: 183 IPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHA-TTLTGTTVGVDVSASEKVW 241
           IPNFH LSWLSILAAVMSF Y+SIG+GLSIAK  G G H  TTLTG TVG+DVS SEKVW
Sbjct: 182 IPNFHNLSWLSILAAVMSFCYASIGVGLSIAKAAGGGEHVRTTLTGVTVGIDVSGSEKVW 241

Query: 242 RAFQAIGDVAFAYAFSTVLVEIQASPI-----SKIFIYSWIII 279
           R FQAIGD+AFAYA+STVL+EIQA+ +      +IF+ S+ +I
Sbjct: 242 RTFQAIGDIAFAYAYSTVLIEIQATTLIFLSNIQIFVRSYKLI 284

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814354|ref|NP_001242816.1| uncharacterized protein LOC100777963 [Glycine max] gi|255642183|gb|ACU21356.1| unknown [Glycine max]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/262 (81%), Positives = 234/262 (89%), Gaps = 5/262 (1%)

Query: 4   EMQKNSMYIEQNDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQ 63
           + QKNSM++E   PE D  K+F DDDGR +RTGTW+TASAHIITAVIGSGVLSLAWAIAQ
Sbjct: 5   QFQKNSMFVE--TPE-DGGKNF-DDDGRVRRTGTWITASAHIITAVIGSGVLSLAWAIAQ 60

Query: 64  LGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGL 123
           +GWVAGPAVL AFSFITY+TSTLL+DCYRSPDPV GKRNYTY DVVR+ LGGR  QLCGL
Sbjct: 61  MGWVAGPAVLFAFSFITYFTSTLLADCYRSPDPVHGKRNYTYSDVVRSVLGGRKFQLCGL 120

Query: 124 AQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI 183
           AQY NL+GVTIGYTITASISMVAVKRSNCFH+HGHHVKCYTSNNP MI+FACIQIVLSQI
Sbjct: 121 AQYINLVGVTIGYTITASISMVAVKRSNCFHKHGHHVKCYTSNNPFMILFACIQIVLSQI 180

Query: 184 PNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDG-PHATTLTGTTVGVDVSASEKVWR 242
           PNFHKL WLSI+AAVMSFAYSSIG+GLS+AKV G G P  TTLTG  VGVDV+ SEKVWR
Sbjct: 181 PNFHKLWWLSIVAAVMSFAYSSIGLGLSVAKVAGGGEPVRTTLTGVQVGVDVTGSEKVWR 240

Query: 243 AFQAIGDVAFAYAFSTVLVEIQ 264
            FQAIGD+AFAYA+S VL+EIQ
Sbjct: 241 TFQAIGDIAFAYAYSNVLIEIQ 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515653|ref|XP_003526513.1| PREDICTED: amino acid permease 6-like [Glycine max]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/262 (81%), Positives = 233/262 (88%), Gaps = 5/262 (1%)

Query: 4   EMQKNSMYIEQNDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQ 63
           + QKNSM++E   PE D  K+F DDDGR KRTGTW+TASAHIITAVIGSGVLSLAWAIAQ
Sbjct: 5   QFQKNSMFVE--TPE-DGGKNF-DDDGRVKRTGTWITASAHIITAVIGSGVLSLAWAIAQ 60

Query: 64  LGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGL 123
           +GWVAGPAVL AFSFITY+TSTLL+DCYRSPDPV GKRNYTY DVVR+ LGGR  QLCGL
Sbjct: 61  MGWVAGPAVLFAFSFITYFTSTLLADCYRSPDPVHGKRNYTYSDVVRSVLGGRKFQLCGL 120

Query: 124 AQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI 183
           AQY NL+GVTIGYTITASISMVAVKRSNCFH+HGHH KCYTSNNP MI+FACIQIVLSQI
Sbjct: 121 AQYINLVGVTIGYTITASISMVAVKRSNCFHKHGHHDKCYTSNNPFMILFACIQIVLSQI 180

Query: 184 PNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDG-PHATTLTGTTVGVDVSASEKVWR 242
           PNFHKL WLSI+AAVMSFAYSSIG+GLS+AKV G G P  TTLTG  VGVDV+ SEKVWR
Sbjct: 181 PNFHKLWWLSIVAAVMSFAYSSIGLGLSVAKVAGGGEPVRTTLTGVQVGVDVTGSEKVWR 240

Query: 243 AFQAIGDVAFAYAFSTVLVEIQ 264
            FQAIGD+AFAYA+S VL+EIQ
Sbjct: 241 TFQAIGDIAFAYAYSNVLIEIQ 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508848|gb|AFK42490.1| unknown [Medicago truncatula]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/262 (80%), Positives = 231/262 (88%), Gaps = 2/262 (0%)

Query: 4   EMQKNSMYIEQNDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQ 63
           + QKNSMYIE  +   D  K+F DDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQ
Sbjct: 5   QFQKNSMYIETPEAFTDGSKNF-DDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQ 63

Query: 64  LGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGL 123
           +GW+AGPAVL+AFSFITY+TSTLL+D YRSPDPV GKRNYTY +VVR+ LGGR  QLCGL
Sbjct: 64  MGWIAGPAVLLAFSFITYFTSTLLADSYRSPDPVHGKRNYTYSEVVRSVLGGRKFQLCGL 123

Query: 124 AQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI 183
           AQY NLIGVTIGYTITASISMVAVKRSNC+H+ GH  KCY SNNP MIIFACIQIVLSQI
Sbjct: 124 AQYINLIGVTIGYTITASISMVAVKRSNCYHKQGHDAKCYISNNPFMIIFACIQIVLSQI 183

Query: 184 PNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHA-TTLTGTTVGVDVSASEKVWR 242
           PNFHKLSWLSI+AAVMSFAYSSIG+GLSIAKV G GP   T+LTG  VGVDV+ +EKVWR
Sbjct: 184 PNFHKLSWLSIVAAVMSFAYSSIGLGLSIAKVAGRGPAVRTSLTGVQVGVDVTGTEKVWR 243

Query: 243 AFQAIGDVAFAYAFSTVLVEIQ 264
            FQAIGD+AFAYA+S VL+EIQ
Sbjct: 244 MFQAIGDIAFAYAYSNVLIEIQ 265

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466761|ref|XP_003603665.1| Amino acid permease [Medicago truncatula] gi|355492713|gb|AES73916.1| Amino acid permease [Medicago truncatula]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/262 (80%), Positives = 231/262 (88%), Gaps = 2/262 (0%)

Query: 4   EMQKNSMYIEQNDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQ 63
           + QKNSMYIE  +   D  K+F DDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQ
Sbjct: 5   QFQKNSMYIETPEAFTDGSKNF-DDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQ 63

Query: 64  LGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGL 123
           +GW+AGPAVL+AFSFITY+TSTLL+D YRSPDPV GKRNYTY +VVR+ LGGR  QLCGL
Sbjct: 64  MGWIAGPAVLLAFSFITYFTSTLLADSYRSPDPVHGKRNYTYSEVVRSVLGGRKFQLCGL 123

Query: 124 AQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI 183
           AQY NLIGVTIGYTITASISMVAVKRSNC+H+ GH  KCY SNNP MIIFACIQIVLSQI
Sbjct: 124 AQYINLIGVTIGYTITASISMVAVKRSNCYHKQGHDAKCYISNNPFMIIFACIQIVLSQI 183

Query: 184 PNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHA-TTLTGTTVGVDVSASEKVWR 242
           PNFHKLSWLSI+AAVMSFAYSSIG+GLSIAKV G GP   T+LTG  VGVDV+ +EKVWR
Sbjct: 184 PNFHKLSWLSIVAAVMSFAYSSIGLGLSIAKVAGRGPAVRTSLTGVQVGVDVTGTEKVWR 243

Query: 243 AFQAIGDVAFAYAFSTVLVEIQ 264
            FQAIGD+AFAYA+S VL+EIQ
Sbjct: 244 MFQAIGDIAFAYAYSNVLIEIQ 265

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284519840|gb|ADB92670.1| amino acid permease 6 [Populus tremula x Populus alba]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/268 (78%), Positives = 234/268 (87%), Gaps = 6/268 (2%)

Query: 1   MAMEMQKNSMYIEQNDPEGD----IRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLS 56
           M  EMQ +S++I +  PEG     + K+ LDDDGR KRTGTW+TASAHIITAVIGSGVLS
Sbjct: 1   MDREMQNSSLHIARG-PEGSESGGMSKN-LDDDGRPKRTGTWITASAHIITAVIGSGVLS 58

Query: 57  LAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGR 116
           LAWAIAQLGWV GP VLM FSFIT++TSTLL+D YRSPDP+TG RNYTYMD VRA LGGR
Sbjct: 59  LAWAIAQLGWVVGPLVLMVFSFITFFTSTLLADSYRSPDPITGNRNYTYMDAVRAHLGGR 118

Query: 117 SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACI 176
            VQLCGLAQY NLIG+T+GYTITASISMVAV+RSNCFH+HGH VKC TSNNP MIIFACI
Sbjct: 119 KVQLCGLAQYVNLIGITVGYTITASISMVAVRRSNCFHKHGHAVKCQTSNNPYMIIFACI 178

Query: 177 QIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSA 236
           QI+LSQIPNFHKLSWLSILAAVMSFAYSSIG+GLS+AKVIG     T+LTG TVGVDVSA
Sbjct: 179 QIMLSQIPNFHKLSWLSILAAVMSFAYSSIGLGLSLAKVIGGAHARTSLTGVTVGVDVSA 238

Query: 237 SEKVWRAFQAIGDVAFAYAFSTVLVEIQ 264
            +KVWR FQA+GD+AFAYA+STVL+EIQ
Sbjct: 239 EQKVWRTFQALGDIAFAYAYSTVLIEIQ 266

Source: Populus tremula x Populus alba

Species: Populus tremula x Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436349|ref|XP_003588450.1| Amino acid transporter [Medicago truncatula] gi|355477498|gb|AES58701.1| Amino acid transporter [Medicago truncatula]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/256 (80%), Positives = 228/256 (89%), Gaps = 2/256 (0%)

Query: 10  MYIEQNDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAG 69
           M+IE  +  G   K+F DDDGRAKRTGTW+TASAHIITAVIGSGVLSLAWAIAQ+GWVAG
Sbjct: 1   MHIEAPENYGPEDKNF-DDDGRAKRTGTWLTASAHIITAVIGSGVLSLAWAIAQMGWVAG 59

Query: 70  PAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNL 129
           PAVL AFSFITY+TSTLL+DCYRSPDPV GKRNYTY +VVRA+LGGR  QLCGLAQY NL
Sbjct: 60  PAVLFAFSFITYFTSTLLADCYRSPDPVHGKRNYTYTEVVRANLGGRKFQLCGLAQYINL 119

Query: 130 IGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189
           +GVTIGYTITASISMVAV+RSNCFH+HGH  KCY SNNP MIIFACIQIVL QIPNFH+L
Sbjct: 120 VGVTIGYTITASISMVAVQRSNCFHKHGHQDKCYVSNNPFMIIFACIQIVLCQIPNFHEL 179

Query: 190 SWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATT-LTGTTVGVDVSASEKVWRAFQAIG 248
           SWLSI+AAVMSFAYSSIG+GLS+AKV G G H TT LTG  +GVDV+A+EKVWR FQAIG
Sbjct: 180 SWLSIVAAVMSFAYSSIGLGLSVAKVAGGGNHVTTSLTGVQIGVDVTATEKVWRMFQAIG 239

Query: 249 DVAFAYAFSTVLVEIQ 264
           D+AFAYAFS VL+EIQ
Sbjct: 240 DIAFAYAFSNVLIEIQ 255

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063403|ref|XP_002301129.1| amino acid permease [Populus trichocarpa] gi|222842855|gb|EEE80402.1| amino acid permease [Populus trichocarpa]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/269 (76%), Positives = 233/269 (86%), Gaps = 6/269 (2%)

Query: 1   MAMEMQKNSMYIEQNDPEGD-----IRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVL 55
           M  EMQ +S+YI +  PEG      I K+ LDDDGR KRTGTW+TASAHIITAVIGSGVL
Sbjct: 1   MDREMQNSSLYISRGRPEGSESGGIISKN-LDDDGRPKRTGTWITASAHIITAVIGSGVL 59

Query: 56  SLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGG 115
           SLAWAIAQLGWV GP VL+ FSFIT++TSTLL+D YRSPDP+TG RNYTYMD VRA+LGG
Sbjct: 60  SLAWAIAQLGWVVGPLVLVVFSFITFFTSTLLADSYRSPDPITGNRNYTYMDAVRANLGG 119

Query: 116 RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFAC 175
           R VQLCGLAQY NLIG+T+GYTITASISMVAV+RSNCFH+HGH VKC TSNNP MIIFAC
Sbjct: 120 RKVQLCGLAQYVNLIGITVGYTITASISMVAVRRSNCFHKHGHAVKCQTSNNPYMIIFAC 179

Query: 176 IQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVS 235
           IQI+LSQIPNFHKLSWLSILAAVMSFAY+SIG+GLS+AKVIG     T+LTG TVGVDVS
Sbjct: 180 IQIMLSQIPNFHKLSWLSILAAVMSFAYASIGLGLSLAKVIGGAHARTSLTGVTVGVDVS 239

Query: 236 ASEKVWRAFQAIGDVAFAYAFSTVLVEIQ 264
           A +KVWR FQA+GD+AFAYA+ST+ + ++
Sbjct: 240 AQQKVWRTFQALGDIAFAYAYSTLNLTVE 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
TAIR|locus:2168912	481	AAP6 "amino acid permease 6" [	0.928	0.540	0.770	7.2e-107
TAIR|locus:2016600	485	AAP1 "amino acid permease 1" [	0.853	0.492	0.707	6.3e-92
TAIR|locus:2201871	475	AAP8 "amino acid permease 8" [	0.878	0.517	0.682	2.9e-87
TAIR|locus:2163981	466	AAP4 "amino acid permease 4" [	0.846	0.508	0.617	6.2e-78
TAIR|locus:2184707	493	AAP2 "amino acid permease 2" [	0.846	0.480	0.617	7.9e-78
TAIR|locus:2031402	476	AAP3 "amino acid permease 3" [	0.853	0.502	0.604	3.4e-77
TAIR|locus:2205876	480	AAP5 "amino acid permease 5" [	0.860	0.502	0.556	9.6e-73
TAIR|locus:2172868	467	AAP7 "amino acid permease 7" [	0.9	0.539	0.471	5.3e-56
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.789	0.501	0.351	5.8e-25
TAIR|locus:2024071	441	LHT2 "lysine histidine transpo	0.778	0.494	0.324	1.1e-22

TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
 Identities = 205/266 (77%), Positives = 229/266 (86%)

Query:     3 MEMQKNSMYIEQNDPE---GDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAW 59
             ME +K SM++EQ+ PE   GD  K+F D+DGR KRTGTW+T SAHIITAVIGSGVLSLAW
Sbjct:     1 ME-KKKSMFVEQSFPEHEIGDTNKNF-DEDGRDKRTGTWMTGSAHIITAVIGSGVLSLAW 58

Query:    60 AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQ 119
             AIAQLGWVAGPAVLMAFSFITY+TST+L+DCYRSPDPVTGKRNYTYM+VVR+ LGGR VQ
Sbjct:    59 AIAQLGWVAGPAVLMAFSFITYFTSTMLADCYRSPDPVTGKRNYTYMEVVRSYLGGRKVQ 118

Query:   120 LCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIV 179
             LCGLAQYGNLIG+TIGYTITASISMVAVKRSNCFH++GH+VKC TSN P MIIFA IQI+
Sbjct:   119 LCGLAQYGNLIGITIGYTITASISMVAVKRSNCFHKNGHNVKCATSNTPFMIIFAIIQII 178

Query:   180 LSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAXXXXXXXXXX-DVSASE 238
             LSQIPNFH LSWLSILAAVMSF Y+SIG+GLSIAK  G G H            DVS +E
Sbjct:   179 LSQIPNFHNLSWLSILAAVMSFCYASIGVGLSIAKAAGGGEHVRTTLTGVTVGIDVSGAE 238

Query:   239 KVWRAFQAIGDVAFAYAFSTVLVEIQ 264
             K+WR FQAIGD+AFAYA+STVL+EIQ
Sbjct:   239 KIWRTFQAIGDIAFAYAYSTVLIEIQ 264

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015810 "aspartate transport" evidence=IDA

GO:0015827 "tryptophan transport" evidence=IDA

TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
 Identities = 169/239 (70%), Positives = 203/239 (84%)

Query:    26 LDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTST 85
             +D+DGR KRTGTW+TASAHIITAVIGSGVLSLAWAIAQLGW+AG ++L+ FSFITY+TST
Sbjct:    29 VDEDGREKRTGTWLTASAHIITAVIGSGVLSLAWAIAQLGWIAGTSILLIFSFITYFTST 88

Query:    86 LLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMV 145
             +L+DCYR+PDPVTGKRNYTYMDVVR+ LGGR VQLCG+AQYGNLIGVT+GYTITASIS+V
Sbjct:    89 MLADCYRAPDPVTGKRNYTYMDVVRSYLGGRKVQLCGVAQYGNLIGVTVGYTITASISLV 148

Query:   146 AVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSS 205
             AV +SNCFH  GH   C  SN P M +F  IQ++LSQIPNFHKLS+LSI+AAVMSF Y++
Sbjct:   149 AVGKSNCFHDKGHTADCTISNYPYMAVFGIIQVILSQIPNFHKLSFLSIMAAVMSFTYAT 208

Query:   206 IGIGLSIAKVIGDGPHAXXXXXXXXXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQ 264
             IGIGL+IA V G               DV+A++K+WR+FQA+GD+AFAYA++TVL+EIQ
Sbjct:   209 IGIGLAIATVAGGKVGKTSMTGTAVGVDVTAAQKIWRSFQAVGDIAFAYAYATVLIEIQ 267

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0009624 "response to nematode" evidence=IEP

GO:0043090 "amino acid import" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

GO:0015804 "neutral amino acid transport" evidence=IGI

TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
 Identities = 168/246 (68%), Positives = 197/246 (80%)

Query:    19 GDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSF 78
             GD     +DDDGR KRTGT+ TASAHIITAVIGSGVLSLAWAIAQLGWVAG  VL+AF+ 
Sbjct:    13 GDAAVKSVDDDGREKRTGTFWTASAHIITAVIGSGVLSLAWAIAQLGWVAGTTVLVAFAI 72

Query:    79 ITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTI 138
             ITYYTSTLL+DCYRSPD +TG RNY YM VVR+ LGG+ VQLCG+AQY NL+GVTIGYTI
Sbjct:    73 ITYYTSTLLADCYRSPDSITGTRNYNYMGVVRSYLGGKKVQLCGVAQYVNLVGVTIGYTI 132

Query:   139 TASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAV 198
             TASIS+VA+ +SNC+H  GH  KC  SN P M  F  +QI+LSQ+PNFHKLS+LSI+AAV
Sbjct:   133 TASISLVAIGKSNCYHDKGHKAKCSVSNYPYMAAFGIVQIILSQLPNFHKLSFLSIIAAV 192

Query:   199 MSFAYSSIGIGLSIAKVIGDGPHAXXXXXXXXXXDVSASEKVWRAFQAIGDVAFAYAFST 258
             MSF+Y+SIGIGL+IA V                 DV+ASEKVW+ FQAIGD+AF+YAF+T
Sbjct:   193 MSFSYASIGIGLAIATVASGKIGKTELTGTVIGVDVTASEKVWKLFQAIGDIAFSYAFTT 252

Query:   259 VLVEIQ 264
             +L+EIQ
Sbjct:   253 ILIEIQ 258

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0006865 "amino acid transport" evidence=IGI

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 147/238 (61%), Positives = 185/238 (77%)

Query:    27 DDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTL 86
             DDDGR KR+GT  TASAHIITAVIGSGVLSLAWAI QLGW+AGP V++ FSF+TYY+STL
Sbjct:    12 DDDGRLKRSGTVWTASAHIITAVIGSGVLSLAWAIGQLGWIAGPTVMLLFSFVTYYSSTL 71

Query:    87 LSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVA 146
             LSDCYR+ DPV+GKRNYTYMD VR+ LGG   ++CGL QY NL G+T+GYTI ASISM+A
Sbjct:    72 LSDCYRTGDPVSGKRNYTYMDAVRSILGGFRFKICGLIQYLNLFGITVGYTIAASISMMA 131

Query:   147 VKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSI 206
             +KRSNCFH  G    C+ S+NP MI+F   +I+LSQI +F ++ WLSI+AA+MSF YS+I
Sbjct:   132 IKRSNCFHESGGKNPCHMSSNPYMIMFGVTEILLSQIKDFDQIWWLSIVAAIMSFTYSAI 191

Query:   207 GIGLSIAKVIGDGPHAXXXXXXXXXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQ 264
             G+ L I +V  +G              V+ ++K+WR FQA+GD+AFAY++S VL+EIQ
Sbjct:   192 GLALGIIQVAANGV-VKGSLTGISIGAVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQ 248

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA;TAS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015399 "primary active transmembrane transporter activity" evidence=IDA

TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
 Identities = 147/238 (61%), Positives = 185/238 (77%)

Query:    27 DDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTL 86
             DDDGR KRTGT  TASAHIITAVIGSGVLSLAWAIAQLGW+AGPAV++ FS +T Y+STL
Sbjct:    39 DDDGRLKRTGTVWTASAHIITAVIGSGVLSLAWAIAQLGWIAGPAVMLLFSLVTLYSSTL 98

Query:    87 LSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVA 146
             LSDCYR+ D V+GKRNYTYMD VR+ LGG   ++CGL QY NL G+ IGYTI ASISM+A
Sbjct:    99 LSDCYRTGDAVSGKRNYTYMDAVRSILGGFKFKICGLIQYLNLFGIAIGYTIAASISMMA 158

Query:   147 VKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSI 206
             +KRSNCFH+ G    C+ S+NP MI+F   +I+LSQ+P+F ++ W+SI+AAVMSF YS+I
Sbjct:   159 IKRSNCFHKSGGKDPCHMSSNPYMIVFGVAEILLSQVPDFDQIWWISIVAAVMSFTYSAI 218

Query:   207 GIGLSIAKVIGDGPHAXXXXXXXXXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQ 264
             G+ L I +V  +G              V+ ++K+WR FQA+GD+AFAY++S VL+EIQ
Sbjct:   219 GLALGIVQVAANGVFKGSLTGISIGT-VTQTQKIWRTFQALGDIAFAYSYSVVLIEIQ 275

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0016020 "membrane" evidence=ISS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0015800 "acidic amino acid transport" evidence=IDA

GO:0015804 "neutral amino acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 145/240 (60%), Positives = 187/240 (77%)

Query:    25 FLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTS 84
             +LDDDG+ KRTG+  TASAHIITAVIGSGVLSLAWA AQLGW+AGP V++ FS +TY+TS
Sbjct:    21 YLDDDGKNKRTGSVWTASAHIITAVIGSGVLSLAWATAQLGWLAGPVVMLLFSAVTYFTS 80

Query:    85 TLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISM 144
             +LL+ CYRS DP++GKRNYTYMD VR++LGG  V LCG+ QY N+ GV IGYTI ++ISM
Sbjct:    81 SLLAACYRSGDPISGKRNYTYMDAVRSNLGGVKVTLCGIVQYLNIFGVAIGYTIASAISM 140

Query:   145 VAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYS 204
             +A+KRSNCFH+ G    C+ ++NP MI F  +QI+ SQIP+F +L WLSILAAVMSF YS
Sbjct:   141 MAIKRSNCFHKSGGKDPCHMNSNPYMIAFGLVQILFSQIPDFDQLWWLSILAAVMSFTYS 200

Query:   205 SIGIGLSIAKVIGDGPHAXXXXXXXXXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQ 264
             S G+ L IA+V+ +G              V+ ++K+WR FQA+GD+AFAY++S +L+EIQ
Sbjct:   201 SAGLALGIAQVVVNGK-VKGSLTGISIGAVTETQKIWRTFQALGDIAFAYSYSIILIEIQ 259

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015802 "basic amino acid transport" evidence=RCA;IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 137/246 (55%), Positives = 184/246 (74%)

Query:    24 DFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYT 83
             D  DDDGR KRTGT  TASAHIITAVIGSGVLSLAWA+AQ+GW+ GP  ++ FSF+T+YT
Sbjct:    18 DSFDDDGRPKRTGTVWTASAHIITAVIGSGVLSLAWAVAQIGWIGGPVAMLLFSFVTFYT 77

Query:    84 STLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASIS 143
             STLL  CYRS D VTGKRNYTYMD + ++LGG  V++CG+ QY NL G  IGYTI ++IS
Sbjct:    78 STLLCSCYRSGDSVTGKRNYTYMDAIHSNLGGIKVKVCGVVQYVNLFGTAIGYTIASAIS 137

Query:   144 MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 203
             +VA++R++C   +G +  C+ + N  MI F  +QI+ SQIP+F +L WLSI+AAVMSFAY
Sbjct:   138 LVAIQRTSCQQMNGPNDPCHVNGNVYMIAFGIVQIIFSQIPDFDQLWWLSIVAAVMSFAY 197

Query:   204 SSIGIGLSIAKVIGD----GP-HAXXXXXXXXXXDVSASEKVWRAFQAIGDVAFAYAFST 258
             S+IG+GL ++KV+ +    G               V++S+K+WR FQ++G++AFAY++S 
Sbjct:   198 SAIGLGLGVSKVVENKEIKGSLTGVTVGTVTLSGTVTSSQKIWRTFQSLGNIAFAYSYSM 257

Query:   259 VLVEIQ 264
             +L+EIQ
Sbjct:   258 ILIEIQ 263

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;TAS

GO:0016020 "membrane" evidence=ISS

GO:0015174 "basic amino acid transmembrane transporter activity" evidence=IDA

GO:0015802 "basic amino acid transport" evidence=TAS

GO:0015809 "arginine transport" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 122/259 (47%), Positives = 165/259 (63%)

Query:    10 MYIEQNDPEGDIRKDFLD-DDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVA 68
             M I+++D    I    L   D    RTGT  TA AHIIT VIG+GVLSLAWA A+LGW+A
Sbjct:     1 MDIKEDDESRVITPTELQLHDSVTARTGTLWTAVAHIITGVIGAGVLSLAWATAELGWIA 60

Query:    69 GPAVLMAFSFITYYTSTLLSDCYRSPDPVTGK-RNYTYMDVVRASLGGRSVQLCGLAQYG 127
             GPA L+AF+ +T  ++ LLSDCYR PDP  G  R  +Y   V+  LG ++  +CG+  Y 
Sbjct:    61 GPAALIAFAGVTLLSAFLLSDCYRFPDPNNGPLRLNSYSQAVKLYLGKKNEIVCGVVVYI 120

Query:   128 NLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKC-Y-TSNNPLMIIFACIQIVLSQIPN 185
             +L G  I YTI  +    A+ +SNC+HR+GH+  C Y  +NN  M++F   QI +SQIPN
Sbjct:   121 SLFGCGIAYTIVIATCSRAIMKSNCYHRNGHNATCSYGDNNNYFMVLFGLTQIFMSQIPN 180

Query:   186 FHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAXXXXXXXXXXDVSASEKVWRAFQ 245
             FH + WLS++AA+MSF YS IGIGL++ K+I    +             +  EKVW  FQ
Sbjct:   181 FHNMVWLSLVAAIMSFTYSFIGIGLALGKII---ENRKIEGSIRGIPAENRGEKVWIVFQ 237

Query:   246 AIGDVAFAYAFSTVLVEIQ 264
             A+G++AF+Y FS +L+EIQ
Sbjct:   238 ALGNIAFSYPFSIILLEIQ 256

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 286 (105.7 bits), Expect = 5.8e-25, P = 5.8e-25
 Identities = 83/236 (35%), Positives = 127/236 (53%)

Query:    32 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCY 91
             + R   W  ++ H +TA++G+GVLSL +A+++LGW  G AVL+    IT YT   + + +
Sbjct:    25 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSELGWGPGIAVLILSWIITLYTLWQMVEMH 84

Query:    92 RSPDPVTGKRNYTYMDVVRASLGGR-SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRS 150
                + V GKR   Y ++ + + G +  + +    Q    +GV I Y +T   S+      
Sbjct:    85 ---EMVPGKRFDRYHELGQHAFGEKLGLWIVVPQQLVVEVGVNIVYMVTGGKSLKKFHDV 141

Query:   151 NCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGL 210
              C    GH  K       +MI FA +  VLSQ+PNF+ +S +S+ AAVMS +YS+I  G 
Sbjct:   142 LC---EGHGCKNIKLTYFIMI-FASVHFVLSQLPNFNSISGVSLAAAVMSLSYSTIAWGA 197

Query:   211 SIAKVIGDGPHAXXXXXXXXXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQAS 266
             S+ K    G  A            +++ KV+  F A+GDVAFAYA   V++EIQA+
Sbjct:   198 SVDK----GKVADVDYHLRAT---TSTGKVFGFFSALGDVAFAYAGHNVVLEIQAT 246

GO:0009536 "plastid" evidence=IC

TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 77/237 (32%), Positives = 119/237 (50%)

Query:    32 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCY 91
             + R   W  ++ H +TA++G+GVLSL +A++ LGW  G  +++    IT YT   + + +
Sbjct:    27 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMVMSWIITLYTLWQMVEMH 86

Query:    92 RSPDPVTGKRNYTYMDVVRASLGGR-SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRS 150
                + V GKR   Y ++ + + G +  + +    Q    +GV I Y +T   S+  V + 
Sbjct:    87 ---EIVPGKRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGASLKKVHQL 143

Query:   151 NCFHRHGHHVKCYTSNNPLMI-IFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIG 209
              C         C        I IFA +  V+S +PNF+ +S +S+ AAVMS  YS+I   
Sbjct:   144 VC-------PDCKEIRTTFWIMIFASVHFVISHLPNFNSISIISLAAAVMSLTYSTIAWA 196

Query:   210 LSIAKVIGDGPHAXXXXXXXXXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQAS 266
              S+ K    G H           DV    KV+    A+GDVAFAYA   V++EIQA+
Sbjct:   197 ASVHK----GVHPDVDYSPRASTDVG---KVFNFLNALGDVAFAYAGHNVVLEIQAT 246

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IGI

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P92934	AAP6_ARATH	No assigned EC number	0.8022	0.9214	0.5363	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	280
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	3e-64

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  206 bits (526), Expect = 3e-64
 Identities = 78/233 (33%), Positives = 107/233 (45%), Gaps = 15/233 (6%)

Query: 34  RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRS 93
            T +   A  ++I A+IG+GVLSL +A  QLGW+ G  +L+    I+ YT  LL  C + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 94  PDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCF 153
            D V GKR  +Y D+     G +   L   A   NL GV I Y I A  ++ A+  S   
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFD 120

Query: 154 HRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIA 213
             H        S    +IIF  I I LS IPN   LS LS++AAV S  Y  I +     
Sbjct: 121 TCH-------ISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSL-YIVILVLSVAE 172

Query: 214 KVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQAS 266
             +               +    + K+ R F AIG + FA+    VL+ IQ +
Sbjct: 173 LGVLTAQ-------GVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNT 218

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	280
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	99.97
KOG1304	449	consensus Amino acid transporters [Amino acid tran	99.97
PLN03074	473	auxin influx permease; Provisional	99.97
KOG1305	411	consensus Amino acid transporter protein [Amino ac	99.92
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	99.9
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.9
PRK10483	414	tryptophan permease; Provisional	99.7
PRK09664	415	tryptophan permease TnaB; Provisional	99.69
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.64
PRK15132	403	tyrosine transporter TyrP; Provisional	99.63
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.57
PRK13629	443	threonine/serine transporter TdcC; Provisional	99.38
TIGR00814	397	stp serine transporter. The HAAAP family includes	99.28
KOG3832	319	consensus Predicted amino acid transporter [Genera	98.95
TIGR00912	359	2A0309 spore germination protein (amino acid perme	98.6
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	98.46
PRK10655	438	potE putrescine transporter; Provisional	98.41
PRK10249	458	phenylalanine transporter; Provisional	98.41
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	98.38
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	98.35
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	98.35
TIGR00909	429	2A0306 amino acid transporter.	98.31
PRK10644	445	arginine:agmatin antiporter; Provisional	98.31
PRK10238	456	aromatic amino acid transporter; Provisional	98.31
PRK10580	457	proY putative proline-specific permease; Provision	98.28
PF03845	320	Spore_permease: Spore germination protein; InterPr	98.23
PRK15049	499	L-asparagine permease; Provisional	98.2
PRK11387	471	S-methylmethionine transporter; Provisional	98.2
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	98.19
TIGR00913	478	2A0310 amino acid permease (yeast).	98.18
PRK10836	489	lysine transporter; Provisional	98.18
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	98.18
PRK11021	410	putative transporter; Provisional	98.16
PRK10746	461	putative transport protein YifK; Provisional	98.15
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	98.06
TIGR00930	953	2a30 K-Cl cotransporter.	98.02
TIGR00906	557	2A0303 cationic amino acid transport permease.	97.97
TIGR00911	501	2A0308 L-type amino acid transporter.	97.94
PRK11357	445	frlA putative fructoselysine transporter; Provisio	97.8
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	97.76
PRK10197	446	gamma-aminobutyrate transporter; Provisional	97.61
COG0531	466	PotE Amino acid transporters [Amino acid transport	97.38
PF02554	376	CstA: Carbon starvation protein CstA; InterPro: IP	97.2
KOG1287	479	consensus Amino acid transporters [Amino acid tran	97.16
COG3949	349	Uncharacterized membrane protein [Function unknown	97.1
COG0833	541	LysP Amino acid transporters [Amino acid transport	96.72
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	96.69
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	96.62
PRK11375	484	allantoin permease; Provisional	96.6
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	96.56
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	96.28
PRK15238	496	inner membrane transporter YjeM; Provisional	96.26
PRK15015	701	carbon starvation protein A; Provisional	96.17
TIGR00907	482	2A0304 amino acid permease (GABA permease).	95.97
COG1966	575	CstA Carbon starvation protein, predicted membrane	95.93
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	95.76
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	95.55
TIGR02358	386	thia_cytX probable hydroxymethylpyrimidine transpo	94.96
KOG1286	554	consensus Amino acid transporters [Amino acid tran	94.95
TIGR02119	471	panF sodium/pantothenate symporter. Pantothenate (	94.46
PRK12488	549	acetate permease; Provisional	94.34
PF00474	406	SSF: Sodium:solute symporter family; InterPro: IPR	94.06
PRK09442	483	panF sodium/panthothenate symporter; Provisional	93.86
PF05525	427	Branch_AA_trans: Branched-chain amino acid transpo	93.72
TIGR00813	407	sss transporter, SSS family. have different number	93.51
PRK11017	404	codB cytosine permease; Provisional	92.88
COG1457	442	CodB Purine-cytosine permease and related proteins	92.67
PRK09395	551	actP acetate permease; Provisional	92.56
TIGR03648	552	Na_symport_lg probable sodium:solute symporter, VC	91.81
COG0591	493	PutP Na+/proline symporter [Amino acid transport a	91.53
TIGR02121	487	Na_Pro_sym sodium/proline symporter. This family c	90.01
TIGR02711	549	symport_actP cation/acetate symporter ActP. Member	89.99
PF02133	440	Transp_cyt_pur: Permease for cytosine/purines, ura	89.52
COG1114	431	BrnQ Branched-chain amino acid permeases [Amino ac	89.32
PRK15433	439	branched-chain amino acid transport system 2 carri	85.69
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	85.35
KOG1289	550	consensus Amino acid transporters [Amino acid tran	82.62

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=5.9e-40  Score=307.56  Aligned_cols=226  Identities=40%  Similarity=0.608  Sum_probs=196.7

Q ss_pred             ccccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582           30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV  109 (280)
Q Consensus        30 ~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~  109 (280)
                      .+++|++||+++.+|.++.++|.|+|+||||++++||+.|++++++.++++.||+.||.+|.+.++.+.|+|+++|.|++
T Consensus        32 ~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~  111 (437)
T KOG1303|consen   32 ITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLG  111 (437)
T ss_pred             cccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHH
Confidence            45688899999999999999999999999999999999999999999999999999999999988888899999999999


Q ss_pred             HHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhh
Q 023582          110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL  189 (280)
Q Consensus       110 ~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l  189 (280)
                      +++||+++++++.+++++.++|+|+.|++..||+++.+++..|.+..      .++.+.|+++++++.+|++++||++++
T Consensus       112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~~l  185 (437)
T KOG1303|consen  112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFHSL  185 (437)
T ss_pred             HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcchh
Confidence            99999999999999999999999999999999999999998765431      344578999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCc
Q 023582          190 SWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPIS  269 (280)
Q Consensus       190 ~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~  269 (280)
                      +++|..|+++++.|..+.++.++.++......++..+.  .     ......  |+++|+++|||++|+++||||++||+
T Consensus       186 ~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~--~-----~~~~~~--f~a~g~iaFaf~gH~v~peIq~tMk~  256 (437)
T KOG1303|consen  186 SYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLD--L-----GTIPTV--FTALGIIAFAYGGHAVLPEIQHTMKS  256 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCccc--C-----CCCcch--hhhhhheeeeecCCeeeeehHhhcCC
Confidence            99999999999999888888887776543221111110  0     111111  89999999999999999999999987


Q ss_pred             c
Q 023582          270 K  270 (280)
Q Consensus       270 ~  270 (280)
                      +
T Consensus       257 p  257 (437)
T KOG1303|consen  257 P  257 (437)
T ss_pred             c
Confidence            4

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=7.6e-34  Score=271.16  Aligned_cols=224  Identities=17%  Similarity=0.214  Sum_probs=169.2

Q ss_pred             ccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHc
Q 023582           34 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASL  113 (280)
Q Consensus        34 ~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~  113 (280)
                      ++++..++++|++|+++|+|+|+||+||+++||++|++++++++.++.||.++|.+|.++.    +  ..+|+|++++++
T Consensus        58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~----~--~~sY~~la~~~~  131 (467)
T PTZ00206         58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT----N--IRTYEGVARVLL  131 (467)
T ss_pred             CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC----C--CCCHHHHHHHHh
Confidence            3567899999999999999999999999999999999999999999999999999987642    2  469999999999


Q ss_pred             CCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhHHH
Q 023582          114 GGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLS  193 (280)
Q Consensus       114 G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~~S  193 (280)
                      ||++++++++++.++++|+|++|+++.||+++.+++....++. .... ..++..+.+++.++++|++++|++++|+++|
T Consensus       132 G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~-~~~~-~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S  209 (467)
T PTZ00206        132 GPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDF-LKQK-SGNRLLTSLMWLCFMLPLVIPRHIDSLRYVS  209 (467)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccch-hhhc-cCcEEeeeehhhhHhhhcccccchHHHHHHH
Confidence            9999999999999999999999999999999988853211000 0000 0122334456778899999999999999999


Q ss_pred             HHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCch----hHHHHHHHHHHHHHHHhcCchhhHhhhhCCCc
Q 023582          194 ILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSAS----EKVWRAFQAIGDVAFAYAFSTVLVEIQASPIS  269 (280)
Q Consensus       194 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~  269 (280)
                      .+|+++.+...+++++..+.++..  +   ..+++++++....+    ....+.+.++|+++|||.||.++||++++||+
T Consensus       210 ~i~~~~i~~~vi~ivi~~~~~~~~--~---~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~  284 (467)
T PTZ00206        210 TIAVSFMVYLVIVIVVHSCMNGLP--E---NIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTN  284 (467)
T ss_pred             HHHHHHHHHHHhhhhhhhhcccCc--c---cccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcc
Confidence            999977654333333333333211  0   01111111110011    11135789999999999999999999999987


Q ss_pred             c
Q 023582          270 K  270 (280)
Q Consensus       270 ~  270 (280)
                      |
T Consensus       285 ~  285 (467)
T PTZ00206        285 R  285 (467)
T ss_pred             c
Confidence            4

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=99.97  E-value=1.9e-32  Score=256.55  Aligned_cols=223  Identities=28%  Similarity=0.398  Sum_probs=179.3

Q ss_pred             ccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHc
Q 023582           34 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASL  113 (280)
Q Consensus        34 ~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~  113 (280)
                      |++|++++++|++|+++|+|+|++|++|+++||++|++++++++.++.||.++|.++.+..+  ++++..+|+|++++++
T Consensus         1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~--~~~~~~~y~~l~~~~~   78 (409)
T PF01490_consen    1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP--NGTGRRSYGDLARRAF   78 (409)
T ss_pred             CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc--cccccccccccccccc
Confidence            57899999999999999999999999999999999999999999999999999999987543  1334689999999999


Q ss_pred             CCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhHHH
Q 023582          114 GGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLS  193 (280)
Q Consensus       114 G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~~S  193 (280)
                      ||++++++++++.++++|.|++|+++.+|++.++.+....+       ...++..+.++..++++|++++|++++++++|
T Consensus        79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-------~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s  151 (409)
T PF01490_consen   79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-------LFISRYVWIIIFALIVLPLSFLKNLKSLRYLS  151 (409)
T ss_pred             cccccccccchheeccccccceeEEEeeeeeeccccccccc-------ccccccccccccccccccccccchhhHHHHHh
Confidence            99999999999999999999999999999999988643221       13456677888889999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCccce
Q 023582          194 ILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISKIF  272 (280)
Q Consensus       194 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~~~  272 (280)
                      .+|+++.+.+..+.+......... ++.+.     .. +......++.+.+.++|+++|||.||.++||++++||+|..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~-~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~  223 (409)
T PF01490_consen  152 ILGLFSIFYFIVIVVIYIISYGPG-EPSGV-----PS-PPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSK  223 (409)
T ss_pred             hhhhhccceeeeeecceeeeeecc-ccccc-----cc-ccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCcc
Confidence            999987664322222222222211 11111     00 00123455678999999999999999999999999987543

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=99.97  E-value=9.2e-31  Score=242.91  Aligned_cols=219  Identities=17%  Similarity=0.183  Sum_probs=178.3

Q ss_pred             cccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHH
Q 023582           33 KRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS  112 (280)
Q Consensus        33 ~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~  112 (280)
                      ++..|..++..|+.|.++|+|+|++|+||+++||+.|.+...+++.++.||.+.+++|.++...+.++...+|++.++.+
T Consensus        44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a  123 (449)
T KOG1304|consen   44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA  123 (449)
T ss_pred             CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence            34568999999999999999999999999999999999999999999999999999997554433333457888887755


Q ss_pred             ----------cCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhc
Q 023582          113 ----------LGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ  182 (280)
Q Consensus       113 ----------~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~  182 (280)
                                +||++|.+++.++.++++|.|++|+++.+++++++.+.   +.     .-.++.+.|+++..+..+|+++
T Consensus       124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~---~~-----~~~~s~~~~i~~~~~~~lll~~  195 (449)
T KOG1304|consen  124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE---HS-----PGVLSVRLYILIQLPPLLLLNL  195 (449)
T ss_pred             HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc---cC-----CCCccHHHHHHHHHHHHHHHHH
Confidence                      47889999999999999999999999999999999861   11     1145667889999999999999


Q ss_pred             CCCchhhhHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHh
Q 023582          183 IPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVE  262 (280)
Q Consensus       183 ~r~l~~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~  262 (280)
                      +||+|.|+.+|++|.++.++-..++..+.+.+.. ..      ++      .+.-.++.+.+..+|+.+|||+|++++.|
T Consensus       196 Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~-~~------~~------~~~~~~~~~~~lf~GtaifafEGig~VLP  262 (449)
T KOG1304|consen  196 IRNLKILSPFSLFANVFILVGLAIIMYYLVQDLP-PT------SD------LPAVTGWSGLPLFFGTAIFAFEGIGMVLP  262 (449)
T ss_pred             HHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccC-Cc------cc------cccccchhhhHHHHHHHHHHhccceEEEe
Confidence            9999999999999999877655554444433322 11      11      11233466788999999999999999999


Q ss_pred             hhhCCCccce
Q 023582          263 IQASPISKIF  272 (280)
Q Consensus       263 I~~~M~~~~~  272 (280)
                      ++++||++..
T Consensus       263 lEn~Mk~P~~  272 (449)
T KOG1304|consen  263 LENSMKKPQK  272 (449)
T ss_pred             hhhcccChhh
Confidence            9999988653

>PLN03074 auxin influx permease; Provisional

Probab=99.97  E-value=9.5e-30  Score=242.71  Aligned_cols=218  Identities=17%  Similarity=0.169  Sum_probs=167.8

Q ss_pred             cccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCC---CCCCCC---Cc-ccH
Q 023582           33 KRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSP---DPVTGK---RN-YTY  105 (280)
Q Consensus        33 ~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~---~~~~g~---~~-~sy  105 (280)
                      ..+++..++.+|++|..+|.|+|+||+||+++||++|++++++.++++.||+++|.+|+.+.   +++++.   ++ .+|
T Consensus        43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~  122 (473)
T PLN03074         43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW  122 (473)
T ss_pred             cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence            34668999999999999999999999999999999999999999999999999999874221   111121   11 378


Q ss_pred             HHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCC
Q 023582          106 MDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPN  185 (280)
Q Consensus       106 ~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~  185 (280)
                      .|+++..+||+|+.+..+...+++++.|+.|++..++++..+..             .++.+.|+++++++++|++++|+
T Consensus       123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~-------------~~~~~~~~~i~~~v~~~~~~i~s  189 (473)
T PLN03074        123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND-------------NLDKRTWTYIFGACCATTVFIPS  189 (473)
T ss_pred             HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC-------------CcCCCeEEeehHHHHHHHHHccC
Confidence            99999999999999999999999999999999988877654421             23446788889999999999999


Q ss_pred             chhhhHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhh
Q 023582          186 FHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQA  265 (280)
Q Consensus       186 l~~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~  265 (280)
                      +++++++|++|+.+++.+...++..++.+...        ++++    .+...++...++++++++|||++|+++|||++
T Consensus       190 l~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~--------~~~~----~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~  257 (473)
T PLN03074        190 FHNYRIWSFLGLLMTTYTAWYMTIAALSHGQV--------EGVK----HSGPTKLVLYFTGATNILYTFGGHAVTVEIMH  257 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------CCCC----CCCchhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            99999999999886554322222222222110        1111    01234566778899999999999999999999


Q ss_pred             CCCc-cceeee
Q 023582          266 SPIS-KIFIYS  275 (280)
Q Consensus       266 ~M~~-~~~~~~  275 (280)
                      +||+ |.|+..
T Consensus       258 ~M~~P~~F~~~  268 (473)
T PLN03074        258 AMWKPQKFKYI  268 (473)
T ss_pred             hccChhcccch
Confidence            9977 445543

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=99.92  E-value=3.1e-25  Score=207.19  Aligned_cols=220  Identities=18%  Similarity=0.262  Sum_probs=170.2

Q ss_pred             ccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHc
Q 023582           34 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASL  113 (280)
Q Consensus        34 ~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~  113 (280)
                      ++.|.+.+++|+.|+++|+|++++|+||++.|.+.|++++.++|+++.++.+++.+|.++.    ++  .+|+++++..+
T Consensus         4 ~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~----~~--~ty~~l~~~~~   77 (411)
T KOG1305|consen    4 GKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKS----GE--RTYSSLGDLIF   77 (411)
T ss_pred             CccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhc----CC--CCHHHHHHHHc
Confidence            4458899999999999999999999999999999999999999999999999999998753    33  39999999999


Q ss_pred             CCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCch-hHHHHHHHHHHHhcCCCchhhhHH
Q 023582          114 GGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNP-LMIIFACIQIVLSQIPNFHKLSWL  192 (280)
Q Consensus       114 G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~i~~~i~~pl~~~r~l~~l~~~  192 (280)
                      |+.++....+....+..| |++|+++.||.++.+........+. ... ..+++. |+++..++.+||++.|+++++++.
T Consensus        78 g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~-~~~-~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~t  154 (411)
T KOG1305|consen   78 GKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEG-GSH-YLDRNFLILLVLLFIILPLSLLKNLDSLKYT  154 (411)
T ss_pred             CCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhccccccc-ccc-cccceeEeehHHHHHHHHHHHHHhhhhHHHH
Confidence            999976666666666666 7999999999999776543211111 111 123333 677888899999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCccc
Q 023582          193 SILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISKI  271 (280)
Q Consensus       193 S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~~  271 (280)
                      |.+++++...+..++++..+.....    ..+..   +  ..+++..+++.+.++|+++|||.||..+.+|++|||||-
T Consensus       155 S~~s~~~~~~fv~~vv~~~~~~~~~----~~~~~---~--~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s  224 (411)
T KOG1305|consen  155 SALSLASVVYFVVLVVYKYFQGPCA----LGRLS---Y--LVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRS  224 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc----cCCcc---c--ccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCch
Confidence            9999988776555555444332210    11111   1  112233346889999999999999999999999999863

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.90  E-value=2e-25  Score=198.16  Aligned_cols=217  Identities=16%  Similarity=0.195  Sum_probs=179.4

Q ss_pred             ccccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCC---CCcccHH
Q 023582           30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTG---KRNYTYM  106 (280)
Q Consensus        30 ~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g---~~~~sy~  106 (280)
                      ++...+.+.++|..|+.|++-|.-+++||+|...+||+ ++..++.++.+|+||+.+|++|..+.++ +|   |.+.||.
T Consensus       111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~-dGevVrvRdsYv  188 (524)
T KOG4303|consen  111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGE-DGEVVRVRDSYV  188 (524)
T ss_pred             CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCC-CCcEEEeehhHH
Confidence            35566779999999999999999999999999999987 9999999999999999999999876543 34   2357999


Q ss_pred             HHHHHHcCCc-chhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCC
Q 023582          107 DVVRASLGGR-SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPN  185 (280)
Q Consensus       107 ~i~~~~~G~~-g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~  185 (280)
                      ++++.+++|. |.+.+.+.+++.+..+|+.|++..||.+..-++..           .+++..|+++....++|.+++|+
T Consensus       189 aIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~-----------svd~~sWm~i~~a~LLpc~FLk~  257 (524)
T KOG4303|consen  189 AIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL-----------SVDKASWMMITSASLLPCSFLKD  257 (524)
T ss_pred             HHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC-----------CccccchhhhhhHHHhhhHHHHH
Confidence            9999998874 55889999999999999999999999998766521           35667899999999999999999


Q ss_pred             chhhhHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhh
Q 023582          186 FHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQA  265 (280)
Q Consensus       186 l~~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~  265 (280)
                      +|..+.+|++..+.-++.-.+++.+|..+..+     ...+.++      ...+.-+.+.++|+++|+|..|..+|.++.
T Consensus       258 Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~d-----W~wskv~------Fsidi~~fPisvG~iVFsYTSqIFLP~LEG  326 (524)
T KOG4303|consen  258 LKIVSRLSFFCTISHLVINLIMVLYCLSFVSD-----WSWSKVT------FSIDINTFPISVGMIVFSYTSQIFLPNLEG  326 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccceeEE------EEEEcccCceEEEEEEEeeeceeecccccc
Confidence            99999999999998888777888787765421     1111111      122223556789999999999999999999


Q ss_pred             CCCcc
Q 023582          266 SPISK  270 (280)
Q Consensus       266 ~M~~~  270 (280)
                      .|++|
T Consensus       327 NM~~p  331 (524)
T KOG4303|consen  327 NMKNP  331 (524)
T ss_pred             ccCCh
Confidence            99875

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.90  E-value=8.5e-23  Score=192.25  Aligned_cols=218  Identities=18%  Similarity=0.144  Sum_probs=172.3

Q ss_pred             ccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHc
Q 023582           34 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASL  113 (280)
Q Consensus        34 ~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~  113 (280)
                      .+.+..++++++.++++|+|+|++|++++..|++++++++++.+.+++++.+++.|+..+.+.    ++.+|.+++++.+
T Consensus         7 ~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~   82 (415)
T COG0814           7 KTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN----GKASITSLVEDYL   82 (415)
T ss_pred             CCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CcccHHHHHHHHh
Confidence            345788999999999999999999999999999999999999999999999999999876431    1259999999999


Q ss_pred             CCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhHHH
Q 023582          114 GGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLS  193 (280)
Q Consensus       114 G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~~S  193 (280)
                      ||+|+++.++++.+.+++.+.+|.+..||.+++.++.....     +  ..+|....+++.+++.++++.++...++..|
T Consensus        83 G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~-----~--~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts  155 (415)
T COG0814          83 GKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGL-----N--PLPRKLGSLIFALVLAFLSWLGTLAVLKITS  155 (415)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhccc-----C--CcchHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence            99999999999999999999999999999999998742210     0  1455667778888888899999999999999


Q ss_pred             HHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCccce
Q 023582          194 ILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISKIF  272 (280)
Q Consensus       194 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~~~  272 (280)
                      .+........++... ..+.+..  +   ..+..  + |.. .+..+.....++|+++|||+||+++|+++++||++..
T Consensus       156 ~l~~~~v~~~~~l~~-~~~~~~~--~---~~l~~--~-~~~-~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~  224 (415)
T COG0814         156 LLVFGKVIYLVLLVV-YLIPHWN--P---ANLFA--L-PSA-SQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSK  224 (415)
T ss_pred             HHHHHHHHHHHHHHH-HHhcccC--H---HHHhc--c-ccc-chhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchh
Confidence            999876555333322 2222210  0   00010  0 000 1245557789999999999999999999999987643

>PRK10483 tryptophan permease; Provisional

Probab=99.70  E-value=6.9e-16  Score=144.32  Aligned_cols=213  Identities=11%  Similarity=0.053  Sum_probs=151.4

Q ss_pred             ccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHH
Q 023582           32 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA  111 (280)
Q Consensus        32 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~  111 (280)
                      ++++++.+++.+.+..+.+|+|+|++|.+.++.|+++++++++++++...||+.++.|...+.+     +..++..++++
T Consensus         7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~-----~g~~~~tma~~   81 (414)
T PRK10483          7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR-----IGSSFDTITKD   81 (414)
T ss_pred             ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCHHHHHHH
Confidence            3667899999999999999999999999999999999999999999999999999999754322     15799999999


Q ss_pred             HcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhc--CCCchhh
Q 023582          112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ--IPNFHKL  189 (280)
Q Consensus       112 ~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~r~l~~l  189 (280)
                      .+||+|+.+.+++..+..|+.+++|+--.|+.+++.++....         ..++..-.+++.++.-.+.+  .|..+++
T Consensus        82 ~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~---------~i~~~~~~llF~~~~~~iv~~gt~~vd~~  152 (414)
T PRK10483         82 LLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSL---------NVPARAAGFGFALLVAFVVWLSTKAVSRM  152 (414)
T ss_pred             HcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCC---------CCcHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            999999999999999999999999999999999988853110         11112222333333333333  2445555


Q ss_pred             hHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCc
Q 023582          190 SWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPIS  269 (280)
Q Consensus       190 ~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~  269 (280)
                      ..+-+.+.+..+..  ++. ....+...     ..+.+.+    +.+...+...+.++|++++||+.|.++|++++.+++
T Consensus       153 n~~l~~~~i~~f~~--~~~-~l~~~i~~-----~~L~~~~----~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~  220 (414)
T PRK10483        153 TAIVLGAKVITFFL--TFG-SLLGHVQP-----ATLFNVA----ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGK  220 (414)
T ss_pred             HHHHHHHHHHHHHH--HHH-HHHhhcCH-----HHHhccc----cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCc
Confidence            55555555443331  111 11112110     0011100    112223345679999999999999999999999876


Q ss_pred             c
Q 023582          270 K  270 (280)
Q Consensus       270 ~  270 (280)
                      +
T Consensus       221 d  221 (414)
T PRK10483        221 D  221 (414)
T ss_pred             C
Confidence            3

>PRK09664 tryptophan permease TnaB; Provisional

Probab=99.69  E-value=1.1e-15  Score=142.80  Aligned_cols=213  Identities=15%  Similarity=0.092  Sum_probs=147.3

Q ss_pred             ccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHc
Q 023582           34 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASL  113 (280)
Q Consensus        34 ~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~  113 (280)
                      ++.+.+++.+.+..+.+|+|+|+||.+.++.|+.+++++++++.+...||+.++.|...+.+     +..++..++++++
T Consensus         7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~-----~g~~l~tma~~~L   81 (415)
T PRK09664          7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP-----VGSSFNTITKDLI   81 (415)
T ss_pred             hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCHHHHHHHHc
Confidence            34478889999999999999999999999999999999999999999999999999754332     1579999999999


Q ss_pred             CCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcC--CCchhhhH
Q 023582          114 GGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI--PNFHKLSW  191 (280)
Q Consensus       114 G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--r~l~~l~~  191 (280)
                      ||+|+.+.+++..+..|+.+++|+--.|+.+++.++.... .       ..+++.-.+++.++.-++.+.  |..+.+..
T Consensus        82 G~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~-~-------~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr  153 (415)
T PRK09664         82 GNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLG-Y-------HANPRIVGICTAIFVASVLWISSLAASRITS  153 (415)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhcc-C-------CCcHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence            9999999999999999999999999999999998753110 0       111222223344333333332  44555555


Q ss_pred             HHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhH-HHHHHHHHHHHHHHhcCchhhHhhhhCCCcc
Q 023582          192 LSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEK-VWRAFQAIGDVAFAYAFSTVLVEIQASPISK  270 (280)
Q Consensus       192 ~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~  270 (280)
                      +-+.+.+..+..   .+.....+...     ..+.+.++   +..... +-..+.++|++++||+.|+++|++.+.++++
T Consensus       154 ~l~~~~ii~f~~---~~~~l~~~i~~-----~~L~~~~~---~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d  222 (415)
T PRK09664        154 LFLGLKIISFVI---VFGSFFFQVDY-----SILRDATS---TTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKR  222 (415)
T ss_pred             HHHHHHHHHHHH---HHHHHhhcccH-----HHHhcCcc---ccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCcc
Confidence            555444433321   11111112110     00111000   011111 2246689999999999999999999888653

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.64  E-value=1.1e-14  Score=136.55  Aligned_cols=209  Identities=13%  Similarity=0.156  Sum_probs=146.0

Q ss_pred             cchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcC
Q 023582           35 TGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLG  114 (280)
Q Consensus        35 ~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G  114 (280)
                      +.+.+++.+.+..+.+|+|+|+||.+.+..|++++++++++++...++|..++.|+..+.+     +..+|.+++++.+|
T Consensus         2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~-----~~~~~~~~a~~~lG   76 (394)
T PF03222_consen    2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTP-----EGSSLTSMAEKYLG   76 (394)
T ss_pred             CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCHHHHHHHHhC
Confidence            3468899999999999999999999999999999999999999999999999999754322     15799999999999


Q ss_pred             CcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcC--CCchhhhHH
Q 023582          115 GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI--PNFHKLSWL  192 (280)
Q Consensus       115 ~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--r~l~~l~~~  192 (280)
                      |+|+++..++..+..++.+++|+.-.|+.+.+.++.....        ..++..-.+++.++...+...  |-..+...+
T Consensus        77 ~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~--------~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~  148 (394)
T PF03222_consen   77 KKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGT--------DLSPWLSSLLFTIIFGGIVYFGTKAVDRINRV  148 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--------CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999999999999999999999999988643211        112222222233222222211  223344333


Q ss_pred             HHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCc
Q 023582          193 SILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPIS  269 (280)
Q Consensus       193 S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~  269 (280)
                      -....+..+..   .+...+.+...        ++...  ..+...++...+.++|+.++||+.|.++|++.+.+++
T Consensus       149 lv~~~i~~~~~---l~~~~~p~~~~--------~~L~~--~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~  212 (394)
T PF03222_consen  149 LVFGMIISFII---LVVYLIPHWNP--------SNLLD--APPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGG  212 (394)
T ss_pred             HHHHHHHHHHH---HHHHHhhhcCH--------HHhhc--cccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCc
Confidence            33333333221   11112222110        11110  0112345557789999999999999999999998875

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=99.63  E-value=2e-14  Score=134.69  Aligned_cols=205  Identities=14%  Similarity=0.150  Sum_probs=142.0

Q ss_pred             hHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcCCc
Q 023582           37 TWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGR  116 (280)
Q Consensus        37 s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~~  116 (280)
                      +.+++.+.+..+.+|+|+|+||.+.+..|++++++++++++.+..|+++++.|+..+.+     +..++.+++++.+||+
T Consensus         4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~-----~~~~~~~~a~~~LG~~   78 (403)
T PRK15132          4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVP-----ADTGLGTLAKRYLGRY   78 (403)
T ss_pred             cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----CCCCHHHHHHHHhChH
Confidence            67899999999999999999999999999999999999999999999999999654322     1468999999999999


Q ss_pred             chhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcC--CCchhhhHHHH
Q 023582          117 SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI--PNFHKLSWLSI  194 (280)
Q Consensus       117 g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--r~l~~l~~~S~  194 (280)
                      |+++..++..+..|..+.+|..-.|+.+.+.+..+..+        +++.....+++.++.....+.  |-..++..+-.
T Consensus        79 g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~--------~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~  150 (403)
T PRK15132         79 GQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI--------SMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLF  150 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC--------CCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            99999999999999999999999999998887642211        112223333333332222222  22334444433


Q ss_pred             HHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCcc
Q 023582          195 LAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISK  270 (280)
Q Consensus       195 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~  270 (280)
                      .+.+..+.   +.....+.+..        .++....+ +.  .+  -.+.++|++++||+.|.++|++.+.++++
T Consensus       151 ~~~ii~~~---~~~~~l~p~~~--------~~~L~~~~-~~--~~--~~~~~iPvl~~SFgfh~iIpsl~~y~~~~  210 (403)
T PRK15132        151 SAKIIFLV---VMLALMMPHIH--------KVNLLTLP-LQ--QG--LALSAIPVIFTSFGFHGSVPSIVSYMGGN  210 (403)
T ss_pred             HHHHHHHH---HHHHHHHHhcC--------HHHHhcCC-cc--cc--HHHHHHHHHHHHhhCCcccHHHHHHhCcC
Confidence            33332222   11111112211        01110000 00  01  27789999999999999999999998763

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.57  E-value=3.5e-14  Score=132.38  Aligned_cols=204  Identities=13%  Similarity=0.070  Sum_probs=143.3

Q ss_pred             HHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcCCcchhhh
Q 023582           42 SAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLC  121 (280)
Q Consensus        42 ~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~~g~~~v  121 (280)
                      +..++++++|+|+|++|.++++.|+.++.+.+++.+.++.++..++.|+..+.++     ..++.+.+++++||++++++
T Consensus         3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~-----~~~~~~~~~~~~G~~~g~~~   77 (381)
T TIGR00837         3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG-----GASFNTIAKDLLGKTGNIIA   77 (381)
T ss_pred             eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHhCHHHHHHH
Confidence            3456789999999999999999999999999999999999999999998654321     45999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHH
Q 023582          122 GLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSF  201 (280)
Q Consensus       122 ~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~~S~~~~~~~~  201 (280)
                      ++...+.++..+++|.+..++.+..+++.....        ..++..+.+++.+++.++.. +..+..++++.+.+...+
T Consensus        78 ~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~v~~~l~~-~G~~~~~~v~~i~~~~~l  148 (381)
T TIGR00837        78 GLSLLFVLYILTYAYISGGGSILSRLIGEYFGF--------PWSARAIVLIFTVLFGSFVW-LSTSAVDRITRVLIFGKI  148 (381)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--------CccHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHH
Confidence            999999999999999999999998887632110        11222333334444444443 456777777776665544


Q ss_pred             HHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCc
Q 023582          202 AYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPIS  269 (280)
Q Consensus       202 ~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~  269 (280)
                      ....+.+...+.+...        ++  +.|.......+.+.+.+++..+++|++|.+++++.+++++
T Consensus       149 ~~l~~~ii~~~~~~~~--------~~--~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~  206 (381)
T TIGR00837       149 IAFALVFSGLLPHVKG--------DL--LLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDG  206 (381)
T ss_pred             HHHHHHHHHHHhhccH--------HH--HhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhcc
Confidence            4322222222222110        00  0010001123346778999999999999999999888863

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=99.38  E-value=1.7e-11  Score=115.11  Aligned_cols=210  Identities=12%  Similarity=0.108  Sum_probs=136.4

Q ss_pred             HHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcCCcchhhh
Q 023582           42 SAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLC  121 (280)
Q Consensus        42 ~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~~g~~~v  121 (280)
                      ...+..+.+|+|+|+||......|.++.+++++++..+++|+...+.|...+.+    ++..++.+++++.+||+|+.+.
T Consensus        25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~----~~~~~i~~v~~~~lG~~g~~i~  100 (443)
T PRK13629         25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGS----NPSGNITETVEEHFGKTGGVVI  100 (443)
T ss_pred             HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----CCCCCHHHHHHHHcChhHHHHH
Confidence            488999999999999999999999999999999999999999999999543221    1256999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcC--CCchhhhHHHHHHHHH
Q 023582          122 GLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI--PNFHKLSWLSILAAVM  199 (280)
Q Consensus       122 ~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--r~l~~l~~~S~~~~~~  199 (280)
                      .++.++..+..+.+|...+.+.+.+.+..+. +..      ..++....+++.+++......  |-+.++..+-....+.
T Consensus       101 ~ilYff~ly~ll~aY~~~itn~l~sfl~~ql-~~~------~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~  173 (443)
T PRK13629        101 TFLYFFAICPLLWIYGVTITNTFMTFWENQL-GFA------PLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIA  173 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcC------CccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888877776543221 100      122323333333333332222  2244455444444443


Q ss_pred             HHHHHHhhhheeeeecccCCCCCCCccccccC--CCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCcc
Q 023582          200 SFAYSSIGIGLSIAKVIGDGPHATTLTGTTVG--VDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISK  270 (280)
Q Consensus       200 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~  270 (280)
                      .+....+   ..+.+...     ..+...+++  ++.......-....++|+++|||+.|+.+|++...+|++
T Consensus       174 ~l~~l~~---~LiP~w~~-----~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~  238 (443)
T PRK13629        174 SLVLISL---SLIPYWNS-----AVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREE  238 (443)
T ss_pred             HHHHHHH---HHHHHcCH-----HHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            3332111   12222210     001100000  000011111346789999999999999999998885443

>TIGR00814 stp serine transporter

Probab=99.28  E-value=1.5e-10  Score=108.69  Aligned_cols=201  Identities=13%  Similarity=0.032  Sum_probs=131.5

Q ss_pred             HHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcCCcchhhh
Q 023582           42 SAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLC  121 (280)
Q Consensus        42 ~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~~g~~~v  121 (280)
                      .+.+..+.+|+|+|++|....+.||+..++..++...+.+++..++.|..-..+    ++..++.+++++.|||+++.+.
T Consensus         9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~----~p~~~i~~~~~~~fGk~~G~ii   84 (397)
T TIGR00814         9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSK----NPCEDITEVVEEHFGKNWGILI   84 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHcCHHHHHHH
Confidence            788899999999999999999999998888888888888999999998632211    1146999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHH
Q 023582          122 GLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSF  201 (280)
Q Consensus       122 ~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~~S~~~~~~~~  201 (280)
                      +++..+..+..+.+|....++.+..........+        ...+.+..+..++.+-.......+.+.+++-+-+...+
T Consensus        85 ~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~--------~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~i  156 (397)
T TIGR00814        85 TLLYFFAIYPILLIYSVAITNDSASFLVNQLGTA--------PPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLV  156 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------CcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888887775321110        01111111111112122222355656665544443222


Q ss_pred             HHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhh
Q 023582          202 AYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQ  264 (280)
Q Consensus       202 ~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~  264 (280)
                      ....+.....+.+...        ++..-.|  +....+.+...+++..+|||.+|+++|++.
T Consensus       157 i~l~~l~~~lip~~~~--------~~L~~~p--~~~~~~~~i~~alpv~~~SF~~~~iIssl~  209 (397)
T TIGR00814       157 LILVLLSLYLIPHWNG--------ANLTTFP--SFNGFLKTLWLTIPVMVFSFNHSPIISSFA  209 (397)
T ss_pred             HHHHHHHHHHHHHcCH--------HHHhcCC--cccchHHHHHHHHHHHHHHHHccccchHHH
Confidence            2111222222222110        1110001  111234577899999999999999999996

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>KOG3832 consensus Predicted amino acid transporter [General function prediction only]

Probab=98.95  E-value=6.9e-09  Score=87.23  Aligned_cols=220  Identities=16%  Similarity=0.277  Sum_probs=136.9

Q ss_pred             hHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHccc-------------CC--C----C-
Q 023582           37 TWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYR-------------SP--D----P-   96 (280)
Q Consensus        37 s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~-------------~~--~----~-   96 (280)
                      |-......+.|.++|+|.|+||.||+..||.+++.++.+.+++++.+...+++.+.             ..  +    + 
T Consensus        13 sq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~st   92 (319)
T KOG3832|consen   13 SQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDEST   92 (319)
T ss_pred             hhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccc
Confidence            34445677888999999999999999999999999999999999999988877421             00  0    0 


Q ss_pred             --------CCC-----CC------------------cccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHH
Q 023582           97 --------VTG-----KR------------------NYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMV  145 (280)
Q Consensus        97 --------~~g-----~~------------------~~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~  145 (280)
                              +.|     +|                  +....+++...|.|.+-.+..+++++++||-...|--..--++.
T Consensus        93 asd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m  172 (319)
T KOG3832|consen   93 ASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAM  172 (319)
T ss_pred             cCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhh
Confidence                    000     00                  12366888888999999999999999999999999776655544


Q ss_pred             HHhh-----hcccccCC--C--ccccc---cCC----chhHHHHH-HHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhhh
Q 023582          146 AVKR-----SNCFHRHG--H--HVKCY---TSN----NPLMIIFA-CIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGI  208 (280)
Q Consensus       146 ~l~~-----~~~~~~~~--~--~~~~~---~~~----~~~~~i~~-~i~~pl~~~r~l~~l~~~S~~~~~~~~~~~~i~i  208 (280)
                      ++.-     ..|....+  +  ...|.   ++|    +.++.|+. ++.+|+.+. ++++.+++.++..++--.- . ..
T Consensus       173 ~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~-~-~~  249 (319)
T KOG3832|consen  173 NITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAA-F-IL  249 (319)
T ss_pred             hhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHh-c-cc
Confidence            4331     11211000  0  01121   111    23444544 355687766 6777777777766543321 1 12


Q ss_pred             heeee--ecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCcc
Q 023582          209 GLSIA--KVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISK  270 (280)
Q Consensus       209 ~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~  270 (280)
                      +.+..  +..+    ++.       +.|+..-.+-+.-.-++...|+|.+|...|+....|+-|
T Consensus       250 g~~l~tmqaee----daa-------~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k  302 (319)
T KOG3832|consen  250 GISLATMQAEE----DAA-------AAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTK  302 (319)
T ss_pred             hhhhhhhhhcc----ccc-------ccCCccccccccccccchhhHHHHhhccCCCCCCCCeec
Confidence            22222  2111    111       112222222122245788899999999999998888554

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=98.60  E-value=1.7e-06  Score=80.09  Aligned_cols=204  Identities=12%  Similarity=0.030  Sum_probs=120.5

Q ss_pred             cchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcC
Q 023582           35 TGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLG  114 (280)
Q Consensus        35 ~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G  114 (280)
                      +-|.+|..+.+..+++|+|++.+|...++.+---+-+..++.++.......++.+..++.+      ..+..+..++++|
T Consensus         2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p------~~~~~~~~~~~~G   75 (359)
T TIGR00912         2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFP------EKNFSEILSKYLG   75 (359)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHhh
Confidence            3577899999999999999999999877644333445566677777777777888665432      2379999999999


Q ss_pred             CcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHH-HHHHHHHHHhcCCCchhhhHHH
Q 023582          115 GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMI-IFACIQIVLSQIPNFHKLSWLS  193 (280)
Q Consensus       115 ~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~r~l~~l~~~S  193 (280)
                      |+...++.+...++.+..+..-.-..++.++....        ++      ...+.+ +..++..-....+.++..++++
T Consensus        76 k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------~~------tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~  141 (359)
T TIGR00912        76 KILGRLLSILFILYFFLIAAYLIRIFADFIKTYLL--------PR------TPIIVIIILIIIVSIYIVRKGIEVLLRTA  141 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CC------CCHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            99999888887777776655555556666554321        00      112222 2222222223345777778777


Q ss_pred             HHHHHHHHHH-HHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHH-HHHHHHhcCchhhHhhhhCCCcc
Q 023582          194 ILAAVMSFAY-SSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAI-GDVAFAYAFSTVLVEIQASPISK  270 (280)
Q Consensus       194 ~~~~~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~-g~~~faf~~~~vi~~I~~~M~~~  270 (280)
                      .+-....+.. ..+.......+.    + ..++.     |-.  ..++.+.+.+. +...++|.+..++.-...++|+|
T Consensus       142 ~i~~~~~i~~~~~il~~~~~~~~----~-~~~l~-----P~~--~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~  208 (359)
T TIGR00912       142 EILLIIFLILFILVLILLAPKLG----N-IKNLL-----PVL--ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK  208 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccc----c-HHHcc-----Ccc--ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh
Confidence            7665443332 112221121111    0 00111     111  11233444333 47888898877777666667664

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=98.46  E-value=1.5e-05  Score=76.50  Aligned_cols=220  Identities=13%  Similarity=0.066  Sum_probs=118.4

Q ss_pred             cccccchHHHHHHHHHHhHhhhhhhHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582           31 RAKRTGTWVTASAHIITAVIGSGVLSLA-WAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV  109 (280)
Q Consensus        31 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP-~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~  109 (280)
                      +.+|+-+.++.....+..++|+|++-.| .+.+++|. ..+...++.+++......-+.|.....+     +..++.+.+
T Consensus        17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~-----~~~~~~~ya   90 (469)
T PRK11049         17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNL-----EYKSFSDFA   90 (469)
T ss_pred             hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCcHHHHH
Confidence            4567778999999999999999999986 58888886 3444455555655555555666532211     123567889


Q ss_pred             HHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhh
Q 023582          110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL  189 (280)
Q Consensus       110 ~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l  189 (280)
                      ++.+||....++.+..++.......+.....+..++.+++.       .      ....+.++...+...+... ..+..
T Consensus        91 ~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~-------~------~~~~~~~~~~~~~~~iN~~-g~~~~  156 (469)
T PRK11049         91 SDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD-------L------SDWVASLAVVLLLLSLNLA-TVKMF  156 (469)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------C------cHHHHHHHHHHHHHHHHHH-hHHHH
Confidence            99999999999988888766444444444455454433220       0      0111222222222223222 33444


Q ss_pred             hHHHHHHHHHHHHHH--Hhhhhee-eeecccCCCCC-CCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhh
Q 023582          190 SWLSILAAVMSFAYS--SIGIGLS-IAKVIGDGPHA-TTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQA  265 (280)
Q Consensus       190 ~~~S~~~~~~~~~~~--~i~i~~~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~  265 (280)
                      +++..+....-+...  +++++.. ......++..+ ....+. ++.....+..+.+.+.++...+|+|.|-......-+
T Consensus       157 ~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~  235 (469)
T PRK11049        157 GEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHL-WNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAA  235 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccc-CCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence            444433222211111  1111111 00111111100 000000 000000112344677899999999999999999999


Q ss_pred             CCCccc
Q 023582          266 SPISKI  271 (280)
Q Consensus       266 ~M~~~~  271 (280)
                      |+|++.
T Consensus       236 E~knP~  241 (469)
T PRK11049        236 ETKDPE  241 (469)
T ss_pred             HhcCHh
Confidence            998743

>PRK10655 potE putrescine transporter; Provisional

Probab=98.41  E-value=3.3e-05  Score=73.47  Aligned_cols=213  Identities=8%  Similarity=-0.067  Sum_probs=115.3

Q ss_pred             cccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHH
Q 023582           33 KRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS  112 (280)
Q Consensus        33 ~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~  112 (280)
                      +|+-+.++.+...+.+++|+|++.+|..+++.|- .+.+..++.+++.......+.|.....+. .|    ..-.-.++.
T Consensus         5 ~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~-~G----G~y~y~~~~   78 (438)
T PRK10655          5 SNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRK-SG----GMGGYAEYA   78 (438)
T ss_pred             cCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CC----chHHHHHHH
Confidence            5667899999999999999999999998988885 35556666666666666666775433221 22    334445688


Q ss_pred             cCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHH--HHHHHHhcCCCchhhh
Q 023582          113 LGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFA--CIQIVLSQIPNFHKLS  190 (280)
Q Consensus       113 ~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~--~i~~pl~~~r~l~~l~  190 (280)
                      +||+...++.+..++.....+.++.+...+.+..+++.   +   . .  .  ...+++...  .+..-+. .+..+..+
T Consensus        79 ~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~---~---~-~--~--~~~~~~~~~~l~~~~~ln-~~g~~~~~  146 (438)
T PRK10655         79 FGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGA---T---L-S--P--VQICLATIGVLWLCTVAN-FGGARITG  146 (438)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---c---c-c--h--HHHHHHHHHHHHHHHHHH-HhCHHHHH
Confidence            99988888888776665554444444444454444321   0   0 0  0  011222111  1111122 23444444


Q ss_pred             HHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCcc
Q 023582          191 WLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISK  270 (280)
Q Consensus       191 ~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~  270 (280)
                      ++..+..+..+.-..+++...+....  ++ .. .++  +++  .....+.+...++....|+|.|-.....+-+|+|++
T Consensus       147 ~i~~i~~~~~l~~l~~~~i~~~~~~~--~~-~~-~~~--~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P  218 (438)
T PRK10655        147 QISSVTVWGVIIPVVGLSIIGWFWFS--PS-LY-VAA--WNP--HHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENP  218 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC--cc-cc-cCC--cCc--cCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCc
Confidence            44443332222111111111111111  10 00 010  111  111223456678889999999999999988888874


Q ss_pred             c
Q 023582          271 I  271 (280)
Q Consensus       271 ~  271 (280)
                      .
T Consensus       219 ~  219 (438)
T PRK10655        219 E  219 (438)
T ss_pred             c
Confidence            3

>PRK10249 phenylalanine transporter; Provisional

Probab=98.41  E-value=2.1e-05  Score=75.40  Aligned_cols=216  Identities=13%  Similarity=0.029  Sum_probs=118.6

Q ss_pred             cccccchHHHHHHHHHHhHhhhhhhHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582           31 RAKRTGTWVTASAHIITAVIGSGVLSLA-WAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV  109 (280)
Q Consensus        31 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP-~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~  109 (280)
                      +.+|+-+.++.....+..++|+|++..| .+.+..|- ...+..++.+++....+.-+.|.....+. .|    +..+.+
T Consensus        18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~-~G----g~~~y~   91 (458)
T PRK10249         18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPV-SG----SFAHFA   91 (458)
T ss_pred             hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----CHHHHH
Confidence            4557778899999999999999999987 55556675 35566666777777777777886544321 22    566678


Q ss_pred             HHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhh
Q 023582          110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL  189 (280)
Q Consensus       110 ~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l  189 (280)
                      ++.+|++...++.+..++.......+.....+..++.+++             ......+..+...+...+.+ +..+..
T Consensus        92 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~lN~-~gv~~~  157 (458)
T PRK10249         92 YKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFP-------------DVPTWIWAAAFFIIINAVNL-VNVRLY  157 (458)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------cCcHHHHHHHHHHHHHHHHH-hcchhh
Confidence            8999999999888887776655455544445544443321             01111122222222222222 234444


Q ss_pred             hHHHHHHHH---HHHHHHHhhhheee-eecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhh
Q 023582          190 SWLSILAAV---MSFAYSSIGIGLSI-AKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQA  265 (280)
Q Consensus       190 ~~~S~~~~~---~~~~~~~i~i~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~  265 (280)
                      +++..+..+   ..+. .+++++... ..+...+  +...++. +......+..+.+...++....|+|.|-.....+-+
T Consensus       158 ~~i~~~~~~ikv~~i~-~~i~~~i~~~~~~~~~~--~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~  233 (458)
T PRK10249        158 GETEFWFALIKVLAII-GMIGFGLWLLFSGHGGE--KASIDNL-WRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAA  233 (458)
T ss_pred             hhHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCCC--CCChhhc-cCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            433322211   1111 111111111 0111000  0011110 100000112344667899999999999999999999


Q ss_pred             CCCcc
Q 023582          266 SPISK  270 (280)
Q Consensus       266 ~M~~~  270 (280)
                      |+|++
T Consensus       234 E~~~P  238 (458)
T PRK10249        234 EARDP  238 (458)
T ss_pred             HhcCH
Confidence            99874

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=98.38  E-value=3.1e-05  Score=74.00  Aligned_cols=110  Identities=15%  Similarity=0.085  Sum_probs=81.8

Q ss_pred             ccccchHHHHHHHHHHhHhhhhhhHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHH
Q 023582           32 AKRTGTWVTASAHIITAVIGSGVLSLA-WAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR  110 (280)
Q Consensus        32 ~~~~~s~~~a~~~l~~~~iG~GiL~lP-~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~  110 (280)
                      .+|+-+.++..+..+.+++|+|++.+| .+.+..|-. +.+..++.+++....+..+.|.....++ .|    +..+.++
T Consensus        10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~P~-~G----g~~~~~~   83 (452)
T TIGR01773        10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVANPD-TG----SFSTYAD   83 (452)
T ss_pred             HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC----CHHHHHH
Confidence            467778999999999999999999999 777788853 5666666677777667777776543322 22    5566788


Q ss_pred             HHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHH
Q 023582          111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAV  147 (280)
Q Consensus       111 ~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l  147 (280)
                      +.+||+...++.+..++.....+.+.....+..++.+
T Consensus        84 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~  120 (452)
T TIGR01773        84 DAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYW  120 (452)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999998888888777666666666666666544

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=98.35  E-value=5e-05  Score=73.04  Aligned_cols=218  Identities=8%  Similarity=-0.030  Sum_probs=118.2

Q ss_pred             cccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHH
Q 023582           33 KRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWV-AGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA  111 (280)
Q Consensus        33 ~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i-~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~  111 (280)
                      +|+-+.+++.+..+++++|+|++.+|....+.|=. ...+..++.+++.........|.....+++.|    ..-+-.++
T Consensus         6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG----G~y~y~~~   81 (473)
T TIGR00905         6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG----GIYAYARE   81 (473)
T ss_pred             CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC----ChhhhHHh
Confidence            56678999999999999999999999888765522 12334455555566666666775443321122    23334588


Q ss_pred             HcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHH-HHHHHHhcCCCchhhh
Q 023582          112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFA-CIQIVLSQIPNFHKLS  190 (280)
Q Consensus       112 ~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~-~i~~pl~~~r~l~~l~  190 (280)
                      .+||+...++.+..++.......++.....+.+..+++...     .+.  ..  ..++.... .+.+-..-.+..+..+
T Consensus        82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~-----~~~--~~--~~~~~~~~~~~~~~~ln~~Gi~~~~  152 (473)
T TIGR00905        82 GFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG-----SGN--PV--PSILGASVLLWVFTFLVLRGVRQAA  152 (473)
T ss_pred             HcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----CCC--cH--HHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            99999999888888776665566666666666665554110     000  00  11111111 1112222334566666


Q ss_pred             HHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCC-CCc-hhHHHHHHHHHHHHHHHhcCchhhHhhhhCCC
Q 023582          191 WLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVD-VSA-SEKVWRAFQAIGDVAFAYAFSTVLVEIQASPI  268 (280)
Q Consensus       191 ~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~-~~~-~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~  268 (280)
                      ++..+..+..+...++.+...+..... +....+     +.++ .+. ...+.....++...+|+|.|-.....+-+|+|
T Consensus       153 ~i~~~~~~~~l~~l~~~ii~~~~~~~~-~~~~~~-----~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k  226 (473)
T TIGR00905       153 FINTITTIAKLIPLFLFIIIGWFWFKL-DLFTAD-----FWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAK  226 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCc-hhcccc-----cCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            665555443222111111111111100 000000     0000 001 12334566889999999999988887777777


Q ss_pred             c
Q 023582          269 S  269 (280)
Q Consensus       269 ~  269 (280)
                      +
T Consensus       227 ~  227 (473)
T TIGR00905       227 N  227 (473)
T ss_pred             c
Confidence            6

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=98.35  E-value=3.4e-05  Score=73.38  Aligned_cols=214  Identities=8%  Similarity=-0.053  Sum_probs=115.0

Q ss_pred             ccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHH
Q 023582           32 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA  111 (280)
Q Consensus        32 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~  111 (280)
                      ++|+-+.++.+...+.+++|+|++.+|...++.|-. .+...++.++...-......|.....+. .| .  .|.-. ++
T Consensus         3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~-~G-G--~y~y~-~~   76 (435)
T PRK10435          3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQ-QG-G--PIAYA-GE   76 (435)
T ss_pred             CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC-C--hhHHH-HH
Confidence            466778999999999999999999999999988853 4444455555555555666665433322 22 1  23333 45


Q ss_pred             HcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHH-HHHHHHHHhcCCCchhhh
Q 023582          112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMII-FACIQIVLSQIPNFHKLS  190 (280)
Q Consensus       112 ~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i-~~~i~~pl~~~r~l~~l~  190 (280)
                       +|+++...+.+..+........++.+...+.+..+++..     .  +  ..  ..+++. ..+..+-+.-.+..+..+
T Consensus        77 -~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~-----~--~--~~--~~~~~~~~i~~~~~~ln~~gvk~~~  144 (435)
T PRK10435         77 -ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL-----N--D--PI--PAGIACIAIVWVFTFVNMLGGTWVS  144 (435)
T ss_pred             -HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-----C--C--hH--HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence             699888888877665544444555455555655544311     0  0  01  011111 111111112223444555


Q ss_pred             HHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCcc
Q 023582          191 WLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISK  270 (280)
Q Consensus       191 ~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~  270 (280)
                      .+..+..+..+......+...+.+. + ++ .  .. .+|.+  +......+...++....|+|.|-......-+|+|++
T Consensus       145 ~i~~i~~~~~li~~~~~~i~g~~~~-~-~~-~--~~-~~~~~--~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP  216 (435)
T PRK10435        145 RLTTIGLVLVLIPVVGTAIVGWHWF-D-AA-T--YA-ANWNT--SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNP  216 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc-C-HH-h--hc-ccccC--CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCc
Confidence            5544443322211111111111111 0 00 0  00 01111  112345678889999999999999999999999875


Q ss_pred             c
Q 023582          271 I  271 (280)
Q Consensus       271 ~  271 (280)
                      .
T Consensus       217 ~  217 (435)
T PRK10435        217 K  217 (435)
T ss_pred             c
Confidence            3

>TIGR00909 2A0306 amino acid transporter

Probab=98.31  E-value=3.9e-05  Score=72.63  Aligned_cols=217  Identities=9%  Similarity=-0.013  Sum_probs=124.0

Q ss_pred             cccchHHHHHHHHHHhHhhhhhhHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHH
Q 023582           33 KRTGTWVTASAHIITAVIGSGVLSLAWAIAQ-LGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA  111 (280)
Q Consensus        33 ~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~-~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~  111 (280)
                      +|+-+.++..+..++.++|+|++.+|..... .|. ...+..++.+++.........|..+..+. .|    ..-+-.++
T Consensus         2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~-~G----g~y~~~~~   75 (429)
T TIGR00909         2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPV-AG----SPYTYAYE   75 (429)
T ss_pred             CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CC----cceeeHHH
Confidence            4667899999999999999999999965543 443 23444555666666667777776544332 22    22344456


Q ss_pred             HcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCcccccc---CCch--hHHHHHHHHHHHhcCCCc
Q 023582          112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYT---SNNP--LMIIFACIQIVLSQIPNF  186 (280)
Q Consensus       112 ~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~--~~~i~~~i~~pl~~~r~l  186 (280)
                      .+||+...++.+...+.....+.++....++.+..+++....+   ....+..   +...  +..+...+.+-+.-.+..
T Consensus        76 ~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~  152 (429)
T TIGR00909        76 AMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLD---LPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGA  152 (429)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc---CchhhhcCCcccccccHHHHHHHHHHHHHHHhCc
Confidence            7999998988888888777777777777788877766521100   0010100   0011  111112222222233456


Q ss_pred             hhhhHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhC
Q 023582          187 HKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQAS  266 (280)
Q Consensus       187 ~~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~  266 (280)
                      +..++++.+.....+....+.+.....+...     .     ++.+..  +....+.+.++...+|+|.|......+-+|
T Consensus       153 ~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~-----~-----~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~~~E  220 (429)
T TIGR00909       153 KESGKVNDILVVLKVAALLLFAALGAIHFAS-----N-----NYTPFM--PMGFGGVGAATALVFFAFIGFEAISTAAEE  220 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHhhCcH-----H-----hcCCCC--CCcHHHHHHHHHHHHHHHhhHHHHHhhHHh
Confidence            6666666655544333222212222221110     0     111111  123446678899999999999999888888


Q ss_pred             CCcc
Q 023582          267 PISK  270 (280)
Q Consensus       267 M~~~  270 (280)
                      +|++
T Consensus       221 ~~~p  224 (429)
T TIGR00909       221 VKNP  224 (429)
T ss_pred             ccCc
Confidence            8774

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=98.31  E-value=5.9e-05  Score=71.94  Aligned_cols=215  Identities=10%  Similarity=-0.015  Sum_probs=113.8

Q ss_pred             cccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHH
Q 023582           31 RAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR  110 (280)
Q Consensus        31 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~  110 (280)
                      +++|+-+.++.+...++.++|+|++.+|...++.|.. .+...++.++...-....+.|.....+. .| ..+.|   ++
T Consensus         5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P~-aG-G~y~~---~~   78 (445)
T PRK10644          5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLDPS-PG-GSYAY---AR   78 (445)
T ss_pred             ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC-ChhHH---HH
Confidence            3566778999999999999999999999888887742 3333444444555555556675433322 23 12344   78


Q ss_pred             HHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhc--CCCchh
Q 023582          111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ--IPNFHK  188 (280)
Q Consensus       111 ~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~r~l~~  188 (280)
                      +.+||+...++.+..++.......+......+.+..+++..      .      +.....++..+++..++.  .+..|.
T Consensus        79 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~------~~~~~~~~~~~~~~~~~~ln~~gvk~  146 (445)
T PRK10644         79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL------K------DPLVLTITCVVVLWIFVLLNIVGPKM  146 (445)
T ss_pred             HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------C------CcHHHHHHHHHHHHHHHHHHHhchHH
Confidence            88999988888877776654444444444444444333210      0      011111111111112221  223455


Q ss_pred             hhHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCC
Q 023582          189 LSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPI  268 (280)
Q Consensus       189 l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~  268 (280)
                      .+++..+..+..+....+.+...+... +.+...   ++  |+  ......+.....++...+|+|.|-.....+-+|+|
T Consensus       147 ~~~i~~i~~~~~~i~l~~~~~~~~~~~-~~~~~~---~~--~~--~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k  218 (445)
T PRK10644        147 ITRVQAVATVLALIPIVGIAVFGWFWF-RGETYM---AA--WN--VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVK  218 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-Cchhcc---CC--cc--ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence            555544443322221111111111111 100000   00  10  01112334556788899999999999999999998


Q ss_pred             ccc
Q 023582          269 SKI  271 (280)
Q Consensus       269 ~~~  271 (280)
                      ++.
T Consensus       219 ~P~  221 (445)
T PRK10644        219 NPK  221 (445)
T ss_pred             Ccc
Confidence            753

>PRK10238 aromatic amino acid transporter; Provisional

Probab=98.31  E-value=5e-05  Score=72.75  Aligned_cols=216  Identities=11%  Similarity=0.019  Sum_probs=118.7

Q ss_pred             cccccchHHHHHHHHHHhHhhhhhhHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582           31 RAKRTGTWVTASAHIITAVIGSGVLSLAW-AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV  109 (280)
Q Consensus        31 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~-a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~  109 (280)
                      +.+|+-+.++..+..++.++|+|++..|. +.+++|- ..++..++.+++......-+.|.....+. .|    ++.+-+
T Consensus         9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~-aG----g~y~~~   82 (456)
T PRK10238          9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPV-AG----SFSHFA   82 (456)
T ss_pred             hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC----CHHHHH
Confidence            45677789999999999999999999885 4555563 34444555556666566666775433222 22    455556


Q ss_pred             HHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhh
Q 023582          110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL  189 (280)
Q Consensus       110 ~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l  189 (280)
                      ++.+||...+++.+..++.....+.+.....++.++.+++.             .....+.++...+...+... ..+..
T Consensus        83 ~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~~~~~~~~i~~~~~~~lN~~-gv~~~  148 (456)
T PRK10238         83 YKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-------------IPTWVSAAVFFVVINAINLT-NVKVF  148 (456)
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------CcHHHHHHHHHHHHHHHHHH-hHHHH
Confidence            77899999999999888887777777766677766544320             11112222222222222222 23333


Q ss_pred             hHHHHHHHHHHHHH--HHhhhheee-eecccCCCCCCCccccccC-CCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhh
Q 023582          190 SWLSILAAVMSFAY--SSIGIGLSI-AKVIGDGPHATTLTGTTVG-VDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQA  265 (280)
Q Consensus       190 ~~~S~~~~~~~~~~--~~i~i~~~~-~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~  265 (280)
                      +.+..+..+.-+..  .+++++..+ .....++  +...++. +. ..+ .+..+.+...+++...|+|.|-.....+-+
T Consensus       149 ~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~--~~~~~~~-~~~~~~-~~~g~~~~~~~~~~~~~af~G~e~~~~~ae  224 (456)
T PRK10238        149 GEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGP--QATVSNL-WDQGGF-LPHGFTGLVMMMAIIMFSFGGLELVGITAA  224 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--Ccccccc-CCCCCC-ccccHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            33333322221110  011111110 1111111  0001100 00 001 112234566788889999999999999999


Q ss_pred             CCCcc
Q 023582          266 SPISK  270 (280)
Q Consensus       266 ~M~~~  270 (280)
                      |+|++
T Consensus       225 E~knP  229 (456)
T PRK10238        225 EADNP  229 (456)
T ss_pred             hhcCh
Confidence            99874

>PRK10580 proY putative proline-specific permease; Provisional

Probab=98.28  E-value=0.00014  Score=69.71  Aligned_cols=220  Identities=13%  Similarity=0.040  Sum_probs=117.1

Q ss_pred             ccccccchHHHHHHHHHHhHhhhhhhHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHH
Q 023582           30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWA-IAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDV  108 (280)
Q Consensus        30 ~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i  108 (280)
                      .+.+|+-+.++.....+..++|+|++.+|.. .+.+|- ...+..++.+++......-+.|.....+. .|    ..-..
T Consensus         5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~-~G----g~y~y   78 (457)
T PRK10580          5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPA-AS----SFSRY   78 (457)
T ss_pred             ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC----CHHHH
Confidence            3456677899999999999999999999754 666674 34566666666777777777886543321 22    34445


Q ss_pred             HHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchh
Q 023582          109 VRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHK  188 (280)
Q Consensus       109 ~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~  188 (280)
                      +++.+||....++.+...+.....+.+.....+..++.+++             ......+.++..++...+.+ +..+.
T Consensus        79 ~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~ln~-~gv~~  144 (457)
T PRK10580         79 AQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFP-------------TVPHWIWVLSVVLIICAVNL-MSVKV  144 (457)
T ss_pred             HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCChHHHHHHHHHHHHHHHH-ccchh
Confidence            68889999888888877766544444433444444433321             01112233222222232332 23344


Q ss_pred             hhHHHHHHHHHHHHH--HHhhhh--eeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhh
Q 023582          189 LSWLSILAAVMSFAY--SSIGIG--LSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQ  264 (280)
Q Consensus       189 l~~~S~~~~~~~~~~--~~i~i~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~  264 (280)
                      .+.+..+..+..+..  .+++++  ........ +.......+ .+.+....+..+.+.+.++....|+|.|-......-
T Consensus       145 ~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~-~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a  222 (457)
T PRK10580        145 FGELEFWFSFFKVATIIIMIVAGIGIIIWGIGN-GGQPTGIHN-LWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITA  222 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCCCCccc-cCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            444332221111110  011111  10011000 000000000 010000011234467788999999999999999999


Q ss_pred             hCCCccc
Q 023582          265 ASPISKI  271 (280)
Q Consensus       265 ~~M~~~~  271 (280)
                      +|+|++.
T Consensus       223 ~E~knP~  229 (457)
T PRK10580        223 GEAKDPE  229 (457)
T ss_pred             HHhcChh
Confidence            9998754

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.23  E-value=0.00014  Score=66.38  Aligned_cols=199  Identities=11%  Similarity=0.049  Sum_probs=119.1

Q ss_pred             chHHHHHHHHHHhHhhhhhhHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHH
Q 023582           36 GTWVTASAHIITAVIGSGVLSLAWAIAQL---GWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS  112 (280)
Q Consensus        36 ~s~~~a~~~l~~~~iG~GiL~lP~a~~~~---G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~  112 (280)
                      -|..|....+..+.+|+|++.+|....+.   ||+ +.++   .+.....-.++..+..++.+      ..+..|..++.
T Consensus         2 IS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi-~~ll---~~~~~l~~~~l~~~l~~~~p------~~~l~~~~~~~   71 (320)
T PF03845_consen    2 ISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWI-SVLL---GGLIGLLLALLIYYLLKRFP------GKTLVEISEKL   71 (320)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHH---HHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHH
Confidence            46788999999999999999999987766   465 3333   33344444444444433322      45999999999


Q ss_pred             cCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhH-HHHHHHHHHHhcCCCchhhhH
Q 023582          113 LGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLM-IIFACIQIVLSQIPNFHKLSW  191 (280)
Q Consensus       113 ~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~~~i~~pl~~~r~l~~l~~  191 (280)
                      +||+..+++.+...++.+......+-..++.++..+-        +      +...|. ....+++.-..-.+.++.+++
T Consensus        72 ~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l--------p------~TP~~~i~~~~ll~~~y~a~~G~e~i~R  137 (320)
T PF03845_consen   72 FGKWLGKIINLLYILYFLLISALVLREFSEFIKTYLL--------P------ETPIWVIILLFLLVAAYAARKGIEVIAR  137 (320)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------C------cCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            9999999999988888888888777777787766542        0      011222 222223333344567888887


Q ss_pred             HHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCcc
Q 023582          192 LSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISK  270 (280)
Q Consensus       192 ~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~  270 (280)
                      .+-+-....+....++......+..        .+++.  |  --..+..+.+.+.-...+.|++-.++.-+...+|+|
T Consensus       138 ~~~~~~~~~~i~~~~i~~~~~~~~~--------~~~l~--P--~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~  204 (320)
T PF03845_consen  138 VAEILFPIFLILLLLILLLSIPNID--------WDNLL--P--VLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK  204 (320)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCC--------HHHee--C--cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            5555444333322222222222211        01110  1  113344566666777777787766665555555553

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>PRK15049 L-asparagine permease; Provisional

Probab=98.20  E-value=0.00013  Score=70.68  Aligned_cols=94  Identities=16%  Similarity=0.200  Sum_probs=68.0

Q ss_pred             ccccchHHHHHHHHHHhHhhhhhhHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHH
Q 023582           32 AKRTGTWVTASAHIITAVIGSGVLSLAW-AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR  110 (280)
Q Consensus        32 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~-a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~  110 (280)
                      .+|+-+.++.....+..++|+|++..|. +.+..|- .+++..++.+++....+.-+.|.....+. .|    +.-.-++
T Consensus        26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~-aG----g~y~y~~   99 (499)
T PRK15049         26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPS-SG----SFVSYAR   99 (499)
T ss_pred             hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----CHHHHHH
Confidence            4566788999999999999999999875 7777775 35555666666666666777786543322 22    5666678


Q ss_pred             HHcCCcchhhhHHHHHHHHHH
Q 023582          111 ASLGGRSVQLCGLAQYGNLIG  131 (280)
Q Consensus       111 ~~~G~~g~~~v~i~~~~~~~g  131 (280)
                      +.+|++...++.+..++....
T Consensus       100 ~~~G~~~gf~~GW~~~l~~~~  120 (499)
T PRK15049        100 EFLGEKAAYVAGWMYFINWAM  120 (499)
T ss_pred             HHhCcHhHHHHHHHHHHHHHH
Confidence            899998888888877665443

>PRK11387 S-methylmethionine transporter; Provisional

Probab=98.20  E-value=0.00016  Score=69.46  Aligned_cols=106  Identities=15%  Similarity=0.060  Sum_probs=70.8

Q ss_pred             cccccchHHHHHHHHHHhHhhhhhhHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582           31 RAKRTGTWVTASAHIITAVIGSGVLSLAWA-IAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV  109 (280)
Q Consensus        31 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~  109 (280)
                      +.+|+-+.++.....+..++|+|++..|-. .+.+|-....+..++.+++......-+.|.....++ .|    .+-.-.
T Consensus        11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~-aG----G~y~y~   85 (471)
T PRK11387         11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPE-TG----AFHVYA   85 (471)
T ss_pred             hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC----CHHHHH
Confidence            456778899999999999999999988754 567774333445555666666666666776543322 23    445567


Q ss_pred             HHHcCCcchhhhHHHHHHHHHHHHHhhHhhhh
Q 023582          110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITAS  141 (280)
Q Consensus       110 ~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~  141 (280)
                      ++.+|++...++.+..++.....+.+.....+
T Consensus        86 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~  117 (471)
T PRK11387         86 ARYLGPATGYTVAWLYWLTWTVALGSSLTAAG  117 (471)
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77899988888888777665544433333333

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=98.19  E-value=0.0002  Score=68.77  Aligned_cols=221  Identities=10%  Similarity=-0.011  Sum_probs=113.8

Q ss_pred             ccchHHHHHHHHHHhHhhhhhhHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHH
Q 023582           34 RTGTWVTASAHIITAVIGSGVLSLAWAIA-QLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS  112 (280)
Q Consensus        34 ~~~s~~~a~~~l~~~~iG~GiL~lP~a~~-~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~  112 (280)
                      |+-+.++.....+.+++|+|++.+|.... ..|....++..++.++........+.|.....++..| ..+.|   +++.
T Consensus         1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gG-G~y~y---~~~~   76 (468)
T TIGR03810         1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDG-GVYSY---AKAG   76 (468)
T ss_pred             CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-Chhhh---HHhH
Confidence            34578899999999999999999997655 4443223334556666666666667776543322111 13344   8899


Q ss_pred             cCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHH-HHHHHHhcCCCchhhhH
Q 023582          113 LGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFA-CIQIVLSQIPNFHKLSW  191 (280)
Q Consensus       113 ~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~-~i~~pl~~~r~l~~l~~  191 (280)
                      |||+...++.+..++.......++.....+.+..+++...     .    ..+...+.+... +..+-..-.+..+..++
T Consensus        77 fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-----~----~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~  147 (468)
T TIGR03810        77 FGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG-----G----GNNPPSIIGASVLLWCVHFLVLRGVEGAAF  147 (468)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----C----CCcHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            9999988888887776555555565554444444332110     0    000011111111 11122222355666666


Q ss_pred             HHHHHHHHHHHH--HHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCc
Q 023582          192 LSILAAVMSFAY--SSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPIS  269 (280)
Q Consensus       192 ~S~~~~~~~~~~--~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~  269 (280)
                      +..+..+.-+..  .+++++....+... ...+. .++.+  +.......+.+...++...+|+|.|-.....+-+|+|+
T Consensus       148 i~~i~~~~ki~~l~~~ii~~~~~~~~~~-~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~  223 (468)
T TIGR03810       148 INTITTIAKLVPLFVFIVIGIFAFKGDT-FTNDF-WGNAN--GGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK  223 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcHhh-cCccc-ccccc--ccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC
Confidence            555544322211  11111111111110 00000 00000  00001122334557889999999998888777778877


Q ss_pred             cc
Q 023582          270 KI  271 (280)
Q Consensus       270 ~~  271 (280)
                      |+
T Consensus       224 ~k  225 (468)
T TIGR03810       224 RS  225 (468)
T ss_pred             cc
Confidence            54

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=98.18  E-value=0.00013  Score=70.25  Aligned_cols=215  Identities=10%  Similarity=0.011  Sum_probs=118.9

Q ss_pred             ccchHHHHHHHHHHhHhhhhhhHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHH
Q 023582           34 RTGTWVTASAHIITAVIGSGVLSLA-WAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS  112 (280)
Q Consensus        34 ~~~s~~~a~~~l~~~~iG~GiL~lP-~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~  112 (280)
                      |+-+.++.....+..++|+|++..| .+.+..|-...++..++.+++......-+.|.....+..    .-.|...+++.
T Consensus         2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~----gG~~~~~~~~~   77 (478)
T TIGR00913         2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVV----SGSFATYASRF   77 (478)
T ss_pred             CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCHHHHHHHH
Confidence            4557888888999999999999975 677777744234445556666666666677765443211    12677788999


Q ss_pred             cCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhHH
Q 023582          113 LGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWL  192 (280)
Q Consensus       113 ~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~~  192 (280)
                      +||....++.+..++.....+.+.....+..+..+.+             ......|..+..++...+. .+..+..+++
T Consensus        78 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~in-~~gv~~~~~~  143 (478)
T TIGR00913        78 VDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD-------------KVNPAVWIAIFYVFIVIIN-LFGVKGYGEA  143 (478)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHHHHHHHHH-HhcchHHHHH
Confidence            9999999998888877666666666666665543211             0111223332222222222 2344444444


Q ss_pred             HHHHHHH----HHHHHHhhhheeeeecccCCCCCCCccccccC--CCCCch---hHHHHHHHHHHHHHHHhcCchhhHhh
Q 023582          193 SILAAVM----SFAYSSIGIGLSIAKVIGDGPHATTLTGTTVG--VDVSAS---EKVWRAFQAIGDVAFAYAFSTVLVEI  263 (280)
Q Consensus       193 S~~~~~~----~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~---~~~~~~~~a~g~~~faf~~~~vi~~I  263 (280)
                      ..+....    .+.+.++.+......... .. .....  .+.  +.+++.   ..+.+...++....|+|.|-.....+
T Consensus       144 ~~~~~~~ki~~l~~~ii~~i~~~~~~~~~-~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~  219 (478)
T TIGR00913       144 EFWFSSIKILAIIGFIILSIILNCGGGPN-HG-YIGFR--YWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALT  219 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CC-CCccc--ccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHH
Confidence            4332211    111111111111111100 00 00000  000  001111   12456778999999999999999999


Q ss_pred             hhCCCcc
Q 023582          264 QASPISK  270 (280)
Q Consensus       264 ~~~M~~~  270 (280)
                      -+|+|++
T Consensus       220 a~E~knP  226 (478)
T TIGR00913       220 AGEAANP  226 (478)
T ss_pred             HHhhcCh
Confidence            9999874

>PRK10836 lysine transporter; Provisional

Probab=98.18  E-value=0.00018  Score=69.56  Aligned_cols=98  Identities=15%  Similarity=0.114  Sum_probs=70.6

Q ss_pred             CCccccccccchHHHHHHHHHHhHhhhhhhHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccc
Q 023582           26 LDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAW-AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYT  104 (280)
Q Consensus        26 ~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~-a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~s  104 (280)
                      +.|+++.+|+-+.++.....+.+++|+|++..|. +.++.|-...++..++.+++....+.-+.|.....+. .|    .
T Consensus         7 ~~~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~-sG----g   81 (489)
T PRK10836          7 TTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPV-SG----S   81 (489)
T ss_pred             cCCcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CC----C
Confidence            4566667788899999999999999999999995 7777775445666677777777777778886543332 23    4


Q ss_pred             HHHHHHHHcCCcchhhhHHHHHHH
Q 023582          105 YMDVVRASLGGRSVQLCGLAQYGN  128 (280)
Q Consensus       105 y~~i~~~~~G~~g~~~v~i~~~~~  128 (280)
                      .-.-+++.+|+....++.+..++.
T Consensus        82 ~y~y~~~~~g~~~gf~~Gw~~~~~  105 (489)
T PRK10836         82 FATYGQNYVEEGFGFALGWNYWYN  105 (489)
T ss_pred             HHHHHHHHcChHHHHHHHHHHHHH
Confidence            455556677877777777665553

>TIGR00908 2A0305 ethanolamine permease

Probab=98.18  E-value=0.00015  Score=69.05  Aligned_cols=216  Identities=12%  Similarity=0.007  Sum_probs=117.1

Q ss_pred             ccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHH
Q 023582           32 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA  111 (280)
Q Consensus        32 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~  111 (280)
                      .+|+-+.++.....+..++|....+.+.+++..|+..-.+..++.+++....+..+.|.....+. .|    ..-.-+++
T Consensus         5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~-~G----g~y~~~~~   79 (442)
T TIGR00908         5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPT-AG----GGYGFARR   79 (442)
T ss_pred             hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC----CHHHHHHH
Confidence            45666788888888888888555566888899998643444444555555555566775433221 22    33345588


Q ss_pred             HcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhH
Q 023582          112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSW  191 (280)
Q Consensus       112 ~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~  191 (280)
                      .+||+...++.+..++.......++....++.+..+++.             .....+.++...+...+. .+..+..++
T Consensus        80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-------------~~~~~~~~~~~~~~~~ln-~~g~~~~~~  145 (442)
T TIGR00908        80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-------------GPGWLAALVFYIVFIGIN-ILGVGEAAK  145 (442)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------CchhHHHHHHHHHHHHHH-HHHHHHHHh
Confidence            999999888888888777767777777778877665531             001111222122222222 223444444


Q ss_pred             HHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCC-CCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCcc
Q 023582          192 LSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGV-DVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISK  270 (280)
Q Consensus       192 ~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~  270 (280)
                      +..+..+..+....+.++....+..  +   .+....++.+ +...+..+.+.+.++...+|+|.|......+-+|+|++
T Consensus       146 i~~~~~~~~~~~l~i~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P  220 (442)
T TIGR00908       146 LEFVVTAVAIIALGVFIGAMVPHFD--S---ANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNP  220 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCC--H---HHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            4433332222111111111111100  0   0000000000 00112234467788889999999999999999999875


Q ss_pred             c
Q 023582          271 I  271 (280)
Q Consensus       271 ~  271 (280)
                      .
T Consensus       221 ~  221 (442)
T TIGR00908       221 K  221 (442)
T ss_pred             c
Confidence            3

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK11021 putative transporter; Provisional

Probab=98.16  E-value=0.0003  Score=66.33  Aligned_cols=204  Identities=11%  Similarity=-0.004  Sum_probs=110.1

Q ss_pred             hHHHHHHHHHHhHhhhhhhHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcCC
Q 023582           37 TWVTASAHIITAVIGSGVLSLAW-AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGG  115 (280)
Q Consensus        37 s~~~a~~~l~~~~iG~GiL~lP~-a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~  115 (280)
                      +++++....+++++|+|++.+|- +.+..|- ...+..++.++........+.|.....++ .|    ..-.-.++.+||
T Consensus         2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~-aG----G~y~y~~~~~G~   75 (410)
T PRK11021          2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPH-AG----GPAHFVGMAFGP   75 (410)
T ss_pred             cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----CHHHhHHHHhCc
Confidence            47889999999999999999985 4455563 35555566666666666777776544332 23    334455678999


Q ss_pred             cchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHH-HHHHHHHHHhcCCCchhhhHHHH
Q 023582          116 RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMI-IFACIQIVLSQIPNFHKLSWLSI  194 (280)
Q Consensus       116 ~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~r~l~~l~~~S~  194 (280)
                      +...+..+..+........+........+..+++.     +      ..  ..+.+ +...+.+-+.-.+..+..+++..
T Consensus        76 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------~~--~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~  142 (410)
T PRK11021         76 RLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGW-----S------SW--QLLLAELLTLALLWLLNLRGASSSANLQT  142 (410)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC-----C------Cc--hHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            98888877766543332333333333444433320     0      00  11111 11111122222345555555554


Q ss_pred             HHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCccc
Q 023582          195 LAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISKI  271 (280)
Q Consensus       195 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~~  271 (280)
                      +..+..+.  .+.+.  +..+...+   .+   .++.  ...+.++.+.+.++...+|+|.|......+-+|+|++.
T Consensus       143 ~~~~~~~~--i~~~~--~~~~~~~~---~~---~~~~--~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~  207 (410)
T PRK11021        143 VIALLIVA--LVVAI--WWAGDIKP---AD---IPFP--APGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE  207 (410)
T ss_pred             HHHHHHHH--HHHHH--HHHcCCch---hc---CCCC--CCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc
Confidence            43322221  11111  11111000   01   1110  01123455677899999999999999999999998743

>PRK10746 putative transport protein YifK; Provisional

Probab=98.15  E-value=0.00022  Score=68.44  Aligned_cols=111  Identities=10%  Similarity=0.004  Sum_probs=78.8

Q ss_pred             cccccchHHHHHHHHHHhHhhhhhhHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582           31 RAKRTGTWVTASAHIITAVIGSGVLSLA-WAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV  109 (280)
Q Consensus        31 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP-~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~  109 (280)
                      +.+|+-+.++.....+..++|+|++..| .+.+.+|- ...+..++.+++.+....-+.|.....+ +.    -++.+-+
T Consensus         7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P-~s----Gg~~~y~   80 (461)
T PRK10746          7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEP-VT----GSFAVYA   80 (461)
T ss_pred             HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC----CCHHHHH
Confidence            3466778899999999999999999987 66667775 3445555566666666677778644322 12    3677788


Q ss_pred             HHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHH
Q 023582          110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAV  147 (280)
Q Consensus       110 ~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l  147 (280)
                      ++.+||++..++.+..++.....+.+.....+..++.+
T Consensus        81 ~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~  118 (461)
T PRK10746         81 HRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFW  118 (461)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999998888888888776666666555555555543

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=98.06  E-value=0.00026  Score=66.67  Aligned_cols=219  Identities=16%  Similarity=0.131  Sum_probs=138.9

Q ss_pred             cccccccchHHHHHHHHHHhHhhhhhh-HHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHH
Q 023582           29 DGRAKRTGTWVTASAHIITAVIGSGVL-SLAWAIAQLGWVAGP-AVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYM  106 (280)
Q Consensus        29 ~~~~~~~~s~~~a~~~l~~~~iG~GiL-~lP~a~~~~G~i~g~-ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~  106 (280)
                      +.+-+|.-+.++--+.-+...+|+|.+ +--.+.+.+|  +++ +...+.+++.+.=++.|.|...+++.     ..|+.
T Consensus         8 ~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AG--PSvlLaY~I~G~~~f~iMRaLGEm~~~~p~-----~gSF~   80 (462)
T COG1113           8 EQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAG--PSVLLAYLIAGIFVFLIMRALGEMLVANPV-----SGSFS   80 (462)
T ss_pred             chhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhC--cHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCcHH
Confidence            344567778888888888999999975 4678888888  444 44566777888888889987654321     35999


Q ss_pred             HHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHH--HHHHhcCC
Q 023582          107 DVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACI--QIVLSQIP  184 (280)
Q Consensus       107 ~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i--~~pl~~~r  184 (280)
                      +.+++.+|+++..+.+...+..-..++++=+..++..++.+++.             ...+.+.++..++  .+=|.-.|
T Consensus        81 ~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~-------------vP~Wv~al~~~~l~~~~NL~sVk  147 (462)
T COG1113          81 DYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD-------------VPQWVFALAAVVLLLAVNLISVK  147 (462)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999888752             1112222222222  23334556


Q ss_pred             CchhhhHH-HHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhh
Q 023582          185 NFHKLSWL-SILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI  263 (280)
Q Consensus       185 ~l~~l~~~-S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I  263 (280)
                      -+.++-+| +++=++.++.+.++.++..+ .+..++++...+++.. +-.---+..+.+.+.++-+.+|||++..++=--
T Consensus       148 ~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~-~g~~~~~~~~g~snl~-~hGGffP~G~~g~~~~~~~v~Faf~GiElvGit  225 (462)
T COG1113         148 VFGELEFWFALIKVAAIIAFIVVGIVLLF-GGFGGGGGAAGFSNLW-DHGGFFPNGFLGFLSALQIVMFAFGGIELVGIT  225 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCCCCccccccc-cCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHH
Confidence            66666654 33333333322222221121 2222222222233211 000002344567889999999999998777655


Q ss_pred             hhCCCc
Q 023582          264 QASPIS  269 (280)
Q Consensus       264 ~~~M~~  269 (280)
                      -+|-|+
T Consensus       226 A~Et~d  231 (462)
T COG1113         226 AAEAKD  231 (462)
T ss_pred             HHhhcC
Confidence            555554

>TIGR00930 2a30 K-Cl cotransporter

Probab=98.02  E-value=0.00035  Score=72.61  Aligned_cols=112  Identities=17%  Similarity=0.149  Sum_probs=84.3

Q ss_pred             ccchHHHHHHHH-HHhHhhhhhhH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHH
Q 023582           34 RTGTWVTASAHI-ITAVIGSGVLS-LAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA  111 (280)
Q Consensus        34 ~~~s~~~a~~~l-~~~~iG~GiL~-lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~  111 (280)
                      ++-+++.+++.- +.+++|+|++- +++...++|...+.+..++.++++..|+.-+.+......++.|   -.|. ...+
T Consensus        76 ~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aG---G~Y~-yisr  151 (953)
T TIGR00930        76 VKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG---GAYY-LISR  151 (953)
T ss_pred             cccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc---HHHH-HHHH
Confidence            344566666666 88999999987 6788889998778888888899999998888886533111122   1343 3467


Q ss_pred             HcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhh
Q 023582          112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKR  149 (280)
Q Consensus       112 ~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~  149 (280)
                      +||+.....+.++.++.+...+..|.+..++.+..+++
T Consensus       152 alGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~  189 (953)
T TIGR00930       152 SLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLR  189 (953)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            78998888888888888888888999989999888775

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=97.97  E-value=0.00094  Score=65.70  Aligned_cols=230  Identities=10%  Similarity=0.017  Sum_probs=120.5

Q ss_pred             cccccchHHHHHHHHHHhHhhhhhhHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHH
Q 023582           31 RAKRTGTWVTASAHIITAVIGSGVLSLAWAI--AQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDV  108 (280)
Q Consensus        31 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~--~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i  108 (280)
                      +.+|+-+.++....-+..++|+|++.+|-..  ...|-. ..+..++.++.+...+....|.....+ +.|- .+.|.  
T Consensus        25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P-~sGg-~Y~y~--   99 (557)
T TIGR00906        25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVP-KAGS-AYLYS--   99 (557)
T ss_pred             chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCc-ceeeH--
Confidence            4577789999999999999999999998643  346743 334445555566666666666543322 2232 34554  


Q ss_pred             HHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhc-c---cccCCCccccccCC-chhHHHHHHHHHHHhcC
Q 023582          109 VRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSN-C---FHRHGHHVKCYTSN-NPLMIIFACIQIVLSQI  183 (280)
Q Consensus       109 ~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~-~---~~~~~~~~~~~~~~-~~~~~i~~~i~~pl~~~  183 (280)
                       ++.+|+...+++.+...+.....+.+.....++.+..++... .   ......... .... ..+..+..++.+-+.-.
T Consensus       100 -~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~-~l~~~~~~~a~~ii~l~~~ln~  177 (557)
T TIGR00906       100 -YVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYD-GLAEYPDFFAVCLILLLAVLLS  177 (557)
T ss_pred             -HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCC-cccccchHHHHHHHHHHHHHHH
Confidence             345899888888888777665555444444555555544310 0   000000000 0101 11111111111112233


Q ss_pred             CCchhhhHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhh
Q 023582          184 PNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI  263 (280)
Q Consensus       184 r~l~~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I  263 (280)
                      +..+..+++..+..+..+....+.+...+.+...   ....... ..+++...+..+.+.+.+....+|+|.|-..+..+
T Consensus       178 ~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~---~~~~~~~-~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~  253 (557)
T TIGR00906       178 FGVKESAWVNKIFTAINILVLLFVIIAGFTKADV---ANWSITE-EKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATT  253 (557)
T ss_pred             hchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCc---hhccccc-cccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHh
Confidence            5666666666555544333222222222211110   0000000 00000011223456788999999999999999999


Q ss_pred             hhCCCccc
Q 023582          264 QASPISKI  271 (280)
Q Consensus       264 ~~~M~~~~  271 (280)
                      -+|+|++.
T Consensus       254 aeE~knP~  261 (557)
T TIGR00906       254 GEEVKNPQ  261 (557)
T ss_pred             HHhccCcc
Confidence            99998854

>TIGR00911 2A0308 L-type amino acid transporter

Probab=97.94  E-value=0.00036  Score=67.61  Aligned_cols=223  Identities=9%  Similarity=0.020  Sum_probs=111.4

Q ss_pred             ccccccccchHHHHHHHHHHhHhhhhhhHHHHH-HHHHhhhH-HHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccH
Q 023582           28 DDGRAKRTGTWVTASAHIITAVIGSGVLSLAWA-IAQLGWVA-GPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTY  105 (280)
Q Consensus        28 ~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-~~~~G~i~-g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy  105 (280)
                      |+.+.+|+-+.++...-.+.+++|+|++..|.. .+..|-.. ..+..++.+++.......+.|.....++ .|    ..
T Consensus        36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~-sG----G~  110 (501)
T TIGR00911        36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPK-SG----GE  110 (501)
T ss_pred             cccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CC----ch
Confidence            334557778899999999999999999998865 55566331 1233445556666666777776544322 22    22


Q ss_pred             HHHHHHHcCCcchhhhHHHHHH-HHHHHHHhhHhhhhhhHH-HHhhhcccccCCCccccccCCchhHHHHH---HHHHHH
Q 023582          106 MDVVRASLGGRSVQLCGLAQYG-NLIGVTIGYTITASISMV-AVKRSNCFHRHGHHVKCYTSNNPLMIIFA---CIQIVL  180 (280)
Q Consensus       106 ~~i~~~~~G~~g~~~v~i~~~~-~~~g~~i~y~i~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~i~~---~i~~pl  180 (280)
                      -.-.++.+||+...+..+.... ...+.+..+....++.+. .+++.       .    ........++..   .+...+
T Consensus       111 y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-------~----~~~~~~~~~i~~~~i~~~~~l  179 (501)
T TIGR00911       111 YNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD-------C----EVPEWAIRLVAVLCVLLLTLV  179 (501)
T ss_pred             hhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------C----CCchHHHHHHHHHHHHHHHHH
Confidence            2223457899877766654433 222333344444444432 22210       0    011111111111   112222


Q ss_pred             hcCCCchhhhHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhh
Q 023582          181 SQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVL  260 (280)
Q Consensus       181 ~~~r~l~~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi  260 (280)
                      . .+..+..+++..+..+..+...++.+...+.....+...+.+.++ .+.   ....+..+...++...+|+|.|-...
T Consensus       180 n-~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~-~f~---~~~~~~~~~~~a~~~~~~af~G~e~~  254 (501)
T TIGR00911       180 N-CLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKN-AFE---GTETSAGGIVLAFYSGIWAYGGWNYL  254 (501)
T ss_pred             H-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCccc-ccC---CCCCcHHHHHHHHHHHHHHHHhHHHH
Confidence            2 234555555555444333321111111111111110000000000 010   11123456778899999999999999


Q ss_pred             HhhhhCCCccc
Q 023582          261 VEIQASPISKI  271 (280)
Q Consensus       261 ~~I~~~M~~~~  271 (280)
                      ..+-.|+|++.
T Consensus       255 ~~~a~E~knP~  265 (501)
T TIGR00911       255 NFVTEEVKNPY  265 (501)
T ss_pred             hhhHHHhcCch
Confidence            99999998854

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=97.80  E-value=0.0011  Score=63.12  Aligned_cols=216  Identities=12%  Similarity=0.082  Sum_probs=109.8

Q ss_pred             cccccchHHHHHHHHHHhHhhhhhhHHHHHH-HHHhhh-HHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHH
Q 023582           31 RAKRTGTWVTASAHIITAVIGSGVLSLAWAI-AQLGWV-AGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDV  108 (280)
Q Consensus        31 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~-~~~G~i-~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i  108 (280)
                      +.+|+-+.++.....+..++|+|++..|... +..|-. ...+..++.+++..-.+....|.....++ .|- .+.|.  
T Consensus         5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~-~GG-~y~y~--   80 (445)
T PRK11357          5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPE-NGA-DYVYL--   80 (445)
T ss_pred             cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCC-ceeeH--
Confidence            3466778999999999999999999998764 445532 23333445555666666666675443332 231 34553  


Q ss_pred             HHHHcCCcchhhhHHHHHH-HHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCch
Q 023582          109 VRASLGGRSVQLCGLAQYG-NLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFH  187 (280)
Q Consensus       109 ~~~~~G~~g~~~v~i~~~~-~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~  187 (280)
                       ++.+||....++.+..+. ........+....++.+....+      .   .  ... .....+...+.+-..-.+..+
T Consensus        81 -~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~------~---~--~~~-~~~~~~~~~~~~~~ln~~gv~  147 (445)
T PRK11357         81 -KNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP------I---D--PLL-GKFIAAGLIIAFMLLHLRSVE  147 (445)
T ss_pred             -HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------C---c--hHH-HHHHHHHHHHHHHHHHHhhhh
Confidence             467899887777775442 2233334444555555443221      0   0  000 011111111111111223444


Q ss_pred             hhhHHHHHHHHHHHHHH--HhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhh
Q 023582          188 KLSWLSILAAVMSFAYS--SIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQA  265 (280)
Q Consensus       188 ~l~~~S~~~~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~  265 (280)
                      ..+++..+..+..+.-.  +++++....+... .  +...+.    + ......+.+.+.++....|+|.|-.....+-+
T Consensus       148 ~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~-~--~~~~~~----~-~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~  219 (445)
T PRK11357        148 GGAAFQTLITIAKIIPFTIVIGLGIFWFKAEN-F--AAPTTT----A-IGATGSFMALLAGISATSWSYTGMASICYMTG  219 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-c--cCCCcc----c-ccccchHHHHHHHHHHHHHHHhhHHHHHhhHH
Confidence            44454444433222211  1111111111110 0  000000    0 00112244667889999999999999999999


Q ss_pred             CCCccc
Q 023582          266 SPISKI  271 (280)
Q Consensus       266 ~M~~~~  271 (280)
                      |+|++.
T Consensus       220 E~k~P~  225 (445)
T PRK11357        220 EIKNPG  225 (445)
T ss_pred             HhcCcc
Confidence            998854

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=97.76  E-value=0.00049  Score=64.88  Aligned_cols=214  Identities=11%  Similarity=0.016  Sum_probs=116.4

Q ss_pred             hHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcCC
Q 023582           37 TWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFIT-YYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGG  115 (280)
Q Consensus        37 s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~-~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~  115 (280)
                      +++++....++.++|+|+...| .....|.. ..+..++.+.+. ........|..+..++     .-..-.-.++.+||
T Consensus         2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~-----~GG~y~~~~~~~g~   74 (426)
T PF13520_consen    2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPS-----AGGIYVWVSRAFGP   74 (426)
T ss_dssp             -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTS-----STTHHHHHHHHH-H
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCC-----cCeeeehhhhcccc
Confidence            5788899999999999999999 77777754 333333333333 4555556665443322     22455666777899


Q ss_pred             cchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhH-HHHHHHHHHHhcCCCchhhhHHHH
Q 023582          116 RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLM-IIFACIQIVLSQIPNFHKLSWLSI  194 (280)
Q Consensus       116 ~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~~~i~~pl~~~r~l~~l~~~S~  194 (280)
                      +...++.+...+.....+.++....++.+...+..    +..+ +  ..  ..+. .+..++..-..-.+..|..++++.
T Consensus        75 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~--~~--~~~~i~~~~~~~~~~l~~~g~~~~~~~~~  145 (426)
T PF13520_consen   75 FWGFIVGWLYWVAYILSLASVASSFASYLLSLFGP----DLNP-S--PW--PQFLIAIILILLFTLLNLLGIKLSGKIQN  145 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG----GGTC-S--HH--HHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             cchhcccceeEEEeeccccccccchhhhhhhcccc----cccc-c--cc--hheeeeecccccceEeeechhhhhhhhhh
Confidence            99998888888888777777777777777554421    0000 0  00  1111 111122222223345666666655


Q ss_pred             HHHHHHH-HHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCccc
Q 023582          195 LAAVMSF-AYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISKI  271 (280)
Q Consensus       195 ~~~~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~~  271 (280)
                      +..+..+ ....+++...+.....+.. .  ......++..+.  .+...+.+++..+|+|.|-...+.+-+|+|+|.
T Consensus       146 ~~~~~~i~~~l~~~i~~~~~~~~~~~~-~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~k~  218 (426)
T PF13520_consen  146 ILTVIKIVIPLLVLIILGIVSFSFSGF-N--SLSFSLSTFFPS--GWPGFLAGFSVAFFAFSGFEAIASLAEENKNKT  218 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCCHH-H------SHSCSSCS--SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSSHH
T ss_pred             hhhhhhhhhhhhhheeEEEeeeccccc-c--cccccccccCCc--cccchhhHHHHHHhhcccccccccccccccchh
Confidence            5554433 1111222122222111000 0  000000000011  111357889999999999999999999998854

...

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=97.61  E-value=0.004  Score=59.54  Aligned_cols=203  Identities=11%  Similarity=0.011  Sum_probs=106.1

Q ss_pred             HHhHhhhhhhHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcCCcchhhhHHH
Q 023582           46 ITAVIGSGVLSLAW-AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLA  124 (280)
Q Consensus        46 ~~~~iG~GiL~lP~-a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~~g~~~v~i~  124 (280)
                      +.+++|+|++-.|. +.++.|. ...+..++.+++....+..+.|.....+. .|    ..-+-+++.+||+...++.+.
T Consensus         4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~-~G----g~y~y~~~~~G~~~gf~~gw~   77 (446)
T PRK10197          4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPD-TG----SFSTYADKAIGRWAGYTIGWL   77 (446)
T ss_pred             ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----CHHHHHHHHcChHHHHHHHHH
Confidence            45789999999985 8888885 36666666777777777777786543321 22    566667799999998888888


Q ss_pred             HHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHH-
Q 023582          125 QYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY-  203 (280)
Q Consensus       125 ~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~~S~~~~~~~~~~-  203 (280)
                      .++.....+.......+..++...+             ......+..+..++...+.+ +..+..+.+..+..+.-+.. 
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~lN~-~gv~~~~~i~~~~~~~ki~~l  143 (446)
T PRK10197         78 YWWFWVLVIPLEANIAAMILHSWVP-------------GIPIWLFSLVITLALTGSNL-LSVKNYGEFEFWLALCKVIAI  143 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc-------------cCcHHHHHHHHHHHHHHHHH-HhhHHHhhhHHHHHHHHHHHH
Confidence            8776555444433333333322211             11111122222222222222 23343333333322211110 


Q ss_pred             -HHhhhheeeeecccCCCCCCCcccc-c-cCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCccc
Q 023582          204 -SSIGIGLSIAKVIGDGPHATTLTGT-T-VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISKI  271 (280)
Q Consensus       204 -~~i~i~~~~~~~~~~~~~~~~~~~v-~-~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~~  271 (280)
                       .+++++.....+.. +..+  ..+. + |+.....+..+.+...++...+|+|.|-......-.|+|++.
T Consensus       144 i~~ii~~~~~~~g~~-~~~~--~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~  211 (446)
T PRK10197        144 LAFIFLGAVAISGFY-PYAE--VSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE  211 (446)
T ss_pred             HHHHHHHHHHhcCCC-CCCC--CCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh
Confidence             11111111111110 0000  0010 0 100000122344778999999999999999999999998754

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=97.38  E-value=0.011  Score=56.08  Aligned_cols=219  Identities=13%  Similarity=0.071  Sum_probs=119.7

Q ss_pred             cccccchHHH-HHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582           31 RAKRTGTWVT-ASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV  109 (280)
Q Consensus        31 ~~~~~~s~~~-a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~  109 (280)
                      +.+|+-+.++ ........++|.|++.+|......+ ....+..++.+++....+....|..+..++ .|    .+-+-.
T Consensus         9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~-~G----G~y~~~   82 (466)
T COG0531           9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPS-AG----GAYAYA   82 (466)
T ss_pred             hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CC----Ceeeeh
Confidence            3344445555 7778888899999999998888775 111222233334444445555565443221 22    455667


Q ss_pred             HHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHH--HHHhcCCCch
Q 023582          110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQ--IVLSQIPNFH  187 (280)
Q Consensus       110 ~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~--~pl~~~r~l~  187 (280)
                      ++.+||+...++....++.......+..+..+..+..+++...  .  .    ......+..+..++.  +-+.-.+..+
T Consensus        83 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~----~~~~~~~~~~~~~~~~~~~~ln~~G~~  154 (466)
T COG0531          83 KRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG--L--L----SIGPLLIILIALALIALLTLLNLRGIK  154 (466)
T ss_pred             hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--h--h----cCCchHHHHHHHHHHHHHHHHHHhhHH
Confidence            8889988888888888888888778877777776666554210  0  0    001012222222222  2222233455


Q ss_pred             hhhHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCC
Q 023582          188 KLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASP  267 (280)
Q Consensus       188 ~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M  267 (280)
                      ..+++..+..+..+....+.....+......+   .+... ..   .+..........++...+|+|.|-......-+|+
T Consensus       155 ~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~---~~~~~-~~---~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~  227 (466)
T COG0531         155 ASAKINSIITILKIIILLIFIILGLFAFGFSN---GNLFA-PF---NPGGGSFGGILAAILLAFFAFTGFEAIATLAEEV  227 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc---cccCC-Cc---ccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHh
Confidence            55555544444333322222112122221111   11000 00   0012233367789999999999999999999999


Q ss_pred             Ccc
Q 023582          268 ISK  270 (280)
Q Consensus       268 ~~~  270 (280)
                      |++
T Consensus       228 knp  230 (466)
T COG0531         228 KNP  230 (466)
T ss_pred             cCc
Confidence            884

>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex

Probab=97.20  E-value=0.012  Score=54.33  Aligned_cols=123  Identities=16%  Similarity=0.121  Sum_probs=88.5

Q ss_pred             CCCCCCCCCCCCccccccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--HcccC
Q 023582           16 DPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLS--DCYRS   93 (280)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~--~~~~~   93 (280)
                      |++++.+.+ +-+|+.+.-+.+.+..+-+=..++-|+|-+-=|..-.+.||+++.+-+++-+.+.---=.+..  -..|+
T Consensus        33 d~~~~TPA~-~~~DGvDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~  111 (376)
T PF02554_consen   33 DDSRPTPAH-TMNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRH  111 (376)
T ss_pred             CCCCCCCee-ECCCCCCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcC
Confidence            343443333 256777766667778888888899999999999888999999888776654433221112222  12222


Q ss_pred             CCCCCCCCcccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHH
Q 023582           94 PDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVA  146 (280)
Q Consensus        94 ~~~~~g~~~~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~  146 (280)
                          .   -.|..+++++..||++|.++.+..++.+.....++....++.+..
T Consensus       112 ----~---G~Si~~i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~  157 (376)
T PF02554_consen  112 ----K---GKSIGEIAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFVN  157 (376)
T ss_pred             ----C---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                1   359999999999999999999999999998888888777776543

This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=97.16  E-value=0.0038  Score=59.66  Aligned_cols=220  Identities=11%  Similarity=0.064  Sum_probs=117.3

Q ss_pred             cccccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHH
Q 023582           29 DGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLG--WVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYM  106 (280)
Q Consensus        29 ~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G--~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~  106 (280)
                      ..+.+|+-+.+.+++.++..++|+|++..|....+.+  ...+.++-++.++++.-....-.|.-...+ ++|   -+|.
T Consensus         7 ~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ip-ksG---gd~a   82 (479)
T KOG1287|consen    7 EVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIP-KSG---GDYA   82 (479)
T ss_pred             cccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCC---cchh
Confidence            3455677889999999999999999999998776655  334555566677788888777777532221 223   2455


Q ss_pred             HHHHHHcCCcc-hhhhHHHHHHHHHHHHHhhHhhhhhh-HHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCC
Q 023582          107 DVVRASLGGRS-VQLCGLAQYGNLIGVTIGYTITASIS-MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIP  184 (280)
Q Consensus       107 ~i~~~~~G~~g-~~~v~i~~~~~~~g~~i~y~i~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r  184 (280)
                      -+.+ +||+.. -....+..++..-..+..+-+..++. +++.++ .|          ...+..--++..+.+..++ ..
T Consensus        83 yi~~-afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~c----------~~p~~~~~lla~~~l~~lt-~~  149 (479)
T KOG1287|consen   83 YISE-AFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-LC----------DVPRVASKLLAAALLVLLT-LI  149 (479)
T ss_pred             hHHH-HhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-CC----------CCchHHHHHHHHHHHHHHH-HH
Confidence            5544 466644 33344444444444556777778886 666654 23          2222122222333333333 33


Q ss_pred             CchhhhHHHHHHHHHHHH---HHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhH
Q 023582          185 NFHKLSWLSILAAVMSFA---YSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLV  261 (280)
Q Consensus       185 ~l~~l~~~S~~~~~~~~~---~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~  261 (280)
                      |..++++.+.+=.+.+..   ...++++..++....+..++.  ++-+.   ...+.+..++.+++=.-.|||.|=..+-
T Consensus       150 n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~--~~~~f---~g~~~~~g~i~lafysglfa~~GWd~lN  224 (479)
T KOG1287|consen  150 NSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNF--ENSEF---EGSDTDVGNIALAFYSGLFAFSGWDYLN  224 (479)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccc--ccccc---ccCcCchHHHHHHHHHhhhcccCchhhc
Confidence            655555544433332222   122222222222211111010  00000   0123344456788888999999876666


Q ss_pred             hhhhCCCcc
Q 023582          262 EIQASPISK  270 (280)
Q Consensus       262 ~I~~~M~~~  270 (280)
                      -+-.|+|++
T Consensus       225 ~vteEiknP  233 (479)
T KOG1287|consen  225 YVTEEIKNP  233 (479)
T ss_pred             cchHhhcCc
Confidence            566666553

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=97.10  E-value=0.0097  Score=54.03  Aligned_cols=103  Identities=10%  Similarity=0.098  Sum_probs=74.1

Q ss_pred             HHHHHHHHhHhhhhhhH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcCCc
Q 023582           40 TASAHIITAVIGSGVLS---LAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGR  116 (280)
Q Consensus        40 ~a~~~l~~~~iG~GiL~---lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~~  116 (280)
                      +-.|-.+.+++|+|-=+   +=-=|..-|+. |..-+++++.+-..++..+.+..++-+      ..+|+|+-+..+||+
T Consensus         7 ~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~------a~~y~~~~~~v~~~~   79 (349)
T COG3949           7 RWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFN------ATSYREILKYVSGPK   79 (349)
T ss_pred             HHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhc------ccchHHHHHHHhhHH
Confidence            34566666888988655   12223344544 455555666666666666666543321      569999999999999


Q ss_pred             chhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhh
Q 023582          117 SVQLCGLAQYGNLIGVTIGYTITASISMVAVKR  149 (280)
Q Consensus       117 g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~  149 (280)
                      ..++.++.+.++++++++.-+--.|+.+.+.+.
T Consensus        80 ~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~  112 (349)
T COG3949          80 FAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG  112 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC
Confidence            999999999999999999988888888877664

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=96.72  E-value=0.049  Score=52.71  Aligned_cols=214  Identities=13%  Similarity=0.058  Sum_probs=137.6

Q ss_pred             ccccchHHHHHHHHHHhHhhhhhhH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHH
Q 023582           32 AKRTGTWVTASAHIITAVIGSGVLS-LAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR  110 (280)
Q Consensus        32 ~~~~~s~~~a~~~l~~~~iG~GiL~-lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~  110 (280)
                      -+|+-..+.-.+.-+...+|+|.+- .-.+.+++|-...++-.++++.+.+..+.-|.|.....+ ++|    +|..-+.
T Consensus        42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P-~sG----sF~~ya~  116 (541)
T COG0833          42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP-VSG----SFSTYAT  116 (541)
T ss_pred             hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCC----chhhhhh
Confidence            4566677777888888999999864 789999999998888899999999999999999765544 333    7888999


Q ss_pred             HHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhc--CCCchh
Q 023582          111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ--IPNFHK  188 (280)
Q Consensus       111 ~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~r~l~~  188 (280)
                      +..++-....+.+..+++-.-++-.-+...+..++-+.+.            .++...|+.++.++++.+..  .|-+.+
T Consensus       117 rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~------------~v~~~~w~~iF~~~i~~iN~~~Vk~fGE  184 (541)
T COG0833         117 RFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPD------------TVPPWIWIAIFLVLIFLLNLFGVKGFGE  184 (541)
T ss_pred             hhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC------------CCChHHHHHHHHHHHHHHHHhcccccce
Confidence            9988887788888877777777777777777777665431            12335788888877766654  445554


Q ss_pred             hhHH-HHHHHHHHHHHHHhhhheeeeecccCCCCCCCcccccc-CCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhC
Q 023582          189 LSWL-SILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTV-GVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQAS  266 (280)
Q Consensus       189 l~~~-S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~  266 (280)
                      .-++ |.+=++.++.+.++.+...+...   |. |+.+ +-.| ...-.-...+.+....+-+..|+|.|..++----.|
T Consensus       185 ~Efw~s~iKV~~ii~Fii~gii~~~Gg~---~~-~~~i-g~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgE  259 (541)
T COG0833         185 TEFWFSSIKVLTIIGFIILGIIIICGGG---PT-HGYI-GFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGE  259 (541)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHhcCCC---CC-CCCc-ceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecc
Confidence            4443 44444333332222221221111   11 1111 1111 000012333567778899999999998766533333


Q ss_pred             C
Q 023582          267 P  267 (280)
Q Consensus       267 M  267 (280)
                      -
T Consensus       260 s  260 (541)
T COG0833         260 S  260 (541)
T ss_pred             c
Confidence            3

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=96.69  E-value=0.23  Score=47.47  Aligned_cols=50  Identities=18%  Similarity=0.049  Sum_probs=44.2

Q ss_pred             cccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhc
Q 023582          102 NYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSN  151 (280)
Q Consensus       102 ~~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~  151 (280)
                      ..++.-+.|..||++|.++..++..+.+.|=........++.+..+++..
T Consensus        75 Gl~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i  124 (442)
T TIGR00800        75 GLPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSI  124 (442)
T ss_pred             CCCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence            46888999999999999999999999999999998899999988877643

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=96.62  E-value=0.44  Score=45.85  Aligned_cols=107  Identities=11%  Similarity=-0.080  Sum_probs=61.3

Q ss_pred             ccccchHHHHHHHHHHh-HhhhhhhHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582           32 AKRTGTWVTASAHIITA-VIGSGVLSLA-WAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV  109 (280)
Q Consensus        32 ~~~~~s~~~a~~~l~~~-~iG~GiL~lP-~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~  109 (280)
                      -+|+-+.++....-... .+++|+.+.| .+....|- ..+...++.++.......-+.|.....+. .|    ..-.-.
T Consensus        11 L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~-aG----G~Y~~~   84 (475)
T TIGR03428        11 LHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPI-SG----AIYQWS   84 (475)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC----CHHHHH
Confidence            45666677766655554 3788998876 55566664 23334444555555555666675443322 23    222334


Q ss_pred             HHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhH
Q 023582          110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISM  144 (280)
Q Consensus       110 ~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l  144 (280)
                      ++.+||+..+++.+...+.....+.+........+
T Consensus        85 ~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~  119 (475)
T TIGR03428        85 RRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVL  119 (475)
T ss_pred             HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66789988888888777765543433333333333

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>PRK11375 allantoin permease; Provisional

Probab=96.60  E-value=0.2  Score=48.51  Aligned_cols=49  Identities=18%  Similarity=0.107  Sum_probs=36.6

Q ss_pred             cccHHHHHHHHcCCcchhhhHHHHH-HHHHHHHHhhHhhhhhhHHHHhhh
Q 023582          102 NYTYMDVVRASLGGRSVQLCGLAQY-GNLIGVTIGYTITASISMVAVKRS  150 (280)
Q Consensus       102 ~~sy~~i~~~~~G~~g~~~v~i~~~-~~~~g~~i~y~i~~~~~l~~l~~~  150 (280)
                      ..++.-++|..||++|.++..+... +..+|=-.....+.|+.+..+...
T Consensus        88 Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~  137 (484)
T PRK11375         88 GVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGK  137 (484)
T ss_pred             CCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999888888774 455555555556677777766543

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=96.56  E-value=0.027  Score=54.15  Aligned_cols=97  Identities=19%  Similarity=0.178  Sum_probs=68.1

Q ss_pred             HHhHhhhhhhH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcCCcchhhhHHH
Q 023582           46 ITAVIGSGVLS-LAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLA  124 (280)
Q Consensus        46 ~~~~iG~GiL~-lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~~g~~~v~i~  124 (280)
                      +..++|+|++. .+.+..+.|.....+..++.+++...++.-+.+..++.++     .-++-..+++.+|+.....+.+.
T Consensus         7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~-----~Gg~y~y~~~~lg~~~Gf~~gw~   81 (478)
T PF00324_consen    7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPS-----AGGFYAYASRGLGPALGFAAGWA   81 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcc-----ccchhhhhhhccCCcCCceeeHH
Confidence            44678888776 5789999998666777777888888888888887654331     23566677789999888888888


Q ss_pred             HHHHHHHHHHhhHhhhhhhHHHH
Q 023582          125 QYGNLIGVTIGYTITASISMVAV  147 (280)
Q Consensus       125 ~~~~~~g~~i~y~i~~~~~l~~l  147 (280)
                      .++.............+..++.+
T Consensus        82 y~~~~~~~~~~~~~~~~~~~~~~  104 (478)
T PF00324_consen   82 YWLSYIAAIAAEATAAGSFLQFW  104 (478)
T ss_pred             HHHHHHHHHHhhhhhhhhhhccc
Confidence            66666666655555555554443

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR00835 agcS amino acid carrier protein

Probab=96.28  E-value=0.14  Score=48.75  Aligned_cols=88  Identities=19%  Similarity=0.139  Sum_probs=53.7

Q ss_pred             cchHHHHHHHHHHhHhhhh-hhHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHcccCCCCCCC-CCcccHHHHH
Q 023582           35 TGTWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPAVLMAFS---FITYYTSTLLSDCYRSPDPVTG-KRNYTYMDVV  109 (280)
Q Consensus        35 ~~s~~~a~~~l~~~~iG~G-iL~lP~a~~~~G~i~g~ill~~~~---~i~~yt~~lL~~~~~~~~~~~g-~~~~sy~~i~  109 (280)
                      +.|.+++.+..+.+.+|+| ++++|.|.+..| -.+++-+.+.+   ..+-|.-..|..-+|+.++ .| .+--+.-++-
T Consensus        46 ~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~-~g~~~GGP~yyi~  123 (425)
T TIGR00835        46 GVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDA-DGVFRGGPMYYIK  123 (425)
T ss_pred             CccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCC-CCCEecChHHHHH
Confidence            4689999999999999998 999999988777 22433333333   3444444444433332111 11 0011226888


Q ss_pred             HHHcCCcchhhhHHH
Q 023582          110 RASLGGRSVQLCGLA  124 (280)
Q Consensus       110 ~~~~G~~g~~~v~i~  124 (280)
                      +...|||...+..++
T Consensus       124 ~gl~~k~lg~lfa~~  138 (425)
T TIGR00835       124 KGLGMRWLAVLFAVF  138 (425)
T ss_pred             HHhCccHHHHHHHHH
Confidence            888888765555555

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=96.26  E-value=0.72  Score=44.68  Aligned_cols=86  Identities=12%  Similarity=0.131  Sum_probs=51.3

Q ss_pred             cccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHcccCCCCCCCCCcccHHHHHHH
Q 023582           33 KRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYY-TSTLLSDCYRSPDPVTGKRNYTYMDVVRA  111 (280)
Q Consensus        33 ~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~y-t~~lL~~~~~~~~~~~g~~~~sy~~i~~~  111 (280)
                      +|+-++++-....+.+++|.+  .+|.+++..|.. +++..++.+.+... ......|.....+...|    .--.-.++
T Consensus         6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG----G~Y~w~~~   78 (496)
T PRK15238          6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG----GIYSWMNK   78 (496)
T ss_pred             cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC----cHHHHHHH
Confidence            456788888888889999975  569888888854 44444444444333 33445665433221112    33334566


Q ss_pred             HcCCcchhhhHHHH
Q 023582          112 SLGGRSVQLCGLAQ  125 (280)
Q Consensus       112 ~~G~~g~~~v~i~~  125 (280)
                      ++|+++..++.+..
T Consensus        79 ~~G~~~gf~~~w~~   92 (496)
T PRK15238         79 SVGPKFAFIGTFMW   92 (496)
T ss_pred             HcCchHHHHHHHHH
Confidence            78888777655443

>PRK15015 carbon starvation protein A; Provisional

Probab=96.17  E-value=0.085  Score=52.17  Aligned_cols=111  Identities=16%  Similarity=0.159  Sum_probs=79.6

Q ss_pred             CccccccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHcccCCCCCCCCCccc
Q 023582           27 DDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFIT--YYTSTLLSDCYRSPDPVTGKRNYT  104 (280)
Q Consensus        27 ~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~--~yt~~lL~~~~~~~~~~~g~~~~s  104 (280)
                      -+|+.+.-+.+-+--+-|=..++-|+|-+-=|..-++.||+++.+-+++-.++.  ..-...|.-..|+    .   -.|
T Consensus        74 ~~DG~DYvPt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~----~---GrS  146 (701)
T PRK15015         74 HNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRR----D---GRS  146 (701)
T ss_pred             CCCCCCcCcCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecC----C---Ccc
Confidence            556666555555556677788999999999999999999999998876644322  1222222222232    1   359


Q ss_pred             HHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhH
Q 023582          105 YMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISM  144 (280)
Q Consensus       105 y~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l  144 (280)
                      ..+++++..|++++.+..+..++.+.-...++-....+.+
T Consensus       147 ig~ia~~~iG~~~~~lfli~i~~iliiviAvfalvvv~al  186 (701)
T PRK15015        147 LGELVKEEMGPTAGVIALVACFMIMVIILAVLAMIVVKAL  186 (701)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888888887777777766666665

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=95.97  E-value=0.79  Score=44.08  Aligned_cols=111  Identities=7%  Similarity=-0.005  Sum_probs=61.7

Q ss_pred             ccccchHHHHHHHHHHhHhh--hhhhH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHH
Q 023582           32 AKRTGTWVTASAHIITAVIG--SGVLS-LAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDV  108 (280)
Q Consensus        32 ~~~~~s~~~a~~~l~~~~iG--~GiL~-lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i  108 (280)
                      .+|+-+.++...--.. ++|  .|+.. ++.+.++.|-...+...++.+++....+.-+.|.....+. .|    ..-.-
T Consensus        10 l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~-~G----g~y~~   83 (482)
T TIGR00907        10 LKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPT-SG----GQYFW   83 (482)
T ss_pred             eecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCC-Cc----cHHHH
Confidence            4455566655443333 444  55544 4567777776544555666677777777777886543322 23    22233


Q ss_pred             HHHHcC----CcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHh
Q 023582          109 VRASLG----GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVK  148 (280)
Q Consensus       109 ~~~~~G----~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~  148 (280)
                      +++++|    +...+++.+...+.....+.+.....++.+..+.
T Consensus        84 ~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~  127 (482)
T TIGR00907        84 SAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIV  127 (482)
T ss_pred             HHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344554    5555666666666666655555555566655544

>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]

Probab=95.93  E-value=0.16  Score=49.17  Aligned_cols=122  Identities=16%  Similarity=0.103  Sum_probs=85.7

Q ss_pred             CCCCCCCCCCCCCccccccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH--ccc
Q 023582           15 NDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSD--CYR   92 (280)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~--~~~   92 (280)
                      .||++..+.+ +.+|+++.-+.+.+..+-|=..++-|+|-+-=|.--++.||.++.+-+++-+++.--==.+++-  ..|
T Consensus        32 ~dp~R~TPA~-~~nDG~DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR  110 (575)
T COG1966          32 LDPNRPTPAH-RKNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVR  110 (575)
T ss_pred             cCCCCCCCce-eccCCcccccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeec
Confidence            3444444443 4778887777778888888888999999999999999999999988876644432111122222  222


Q ss_pred             CCCCCCCCCcccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhH
Q 023582           93 SPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISM  144 (280)
Q Consensus        93 ~~~~~~g~~~~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l  144 (280)
                      +       +-.|..+++++-.|+..+.+..+...+-..-+...+.....+.+
T Consensus       111 ~-------~G~Si~~ia~~~lG~~a~~~~~~~~l~iliiv~Avfa~vv~~~l  155 (575)
T COG1966         111 H-------GGKSIGEIAGKYLGRTAKVFFLLLALILLILVGAVFAAVIAKLL  155 (575)
T ss_pred             c-------CCccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2       13599999999999999998888777776666666555554443

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=95.76  E-value=0.52  Score=45.92  Aligned_cols=88  Identities=13%  Similarity=0.065  Sum_probs=49.6

Q ss_pred             ccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHHHHHcccCCCCCCCCCcccHHHHHHH
Q 023582           34 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYY--TSTLLSDCYRSPDPVTGKRNYTYMDVVRA  111 (280)
Q Consensus        34 ~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~y--t~~lL~~~~~~~~~~~g~~~~sy~~i~~~  111 (280)
                      ++-+.+.-++..+..+.  ++..+| .+++.|  ++.+...+++.+.+.  .+....|.....++..|    ..-.=.++
T Consensus         4 ~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G--~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G----G~y~wv~~   74 (507)
T TIGR00910         4 KKLSLFGFFAITASMVL--AVYEYP-TFATSG--FHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG----GIFAWVSN   74 (507)
T ss_pred             cEeeHHHHHHHHHHHHH--HHHhhH-HHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC----Ceeeehhh
Confidence            34556555544444444  567888 577888  455555555555543  44555665432110112    22333578


Q ss_pred             HcCCcchhhhHHHHHHHHH
Q 023582          112 SLGGRSVQLCGLAQYGNLI  130 (280)
Q Consensus       112 ~~G~~g~~~v~i~~~~~~~  130 (280)
                      ++|+++..++.+..+++..
T Consensus        75 a~G~~~Gf~~~~~~W~~~~   93 (507)
T TIGR00910        75 TLGERFGFAAIFFGWFQIA   93 (507)
T ss_pred             ccCccHHHHHHHHHHHHHH
Confidence            8899887776666666544

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=95.55  E-value=0.21  Score=46.89  Aligned_cols=81  Identities=15%  Similarity=0.181  Sum_probs=58.7

Q ss_pred             cccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHh
Q 023582          102 NYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLS  181 (280)
Q Consensus       102 ~~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~  181 (280)
                      ..-..+++++.||++|+.+..+.+.+.|++++++.+...+|.++++++.             .+...|.+++.++.+.++
T Consensus       254 ~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k-------------~~y~~~v~~~~l~s~~ia  320 (378)
T TIGR00796       254 AQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK-------------LSYKTWVIVFTLFSFIVA  320 (378)
T ss_pred             HHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CCHHHHHHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999998887531             222345555555544444


Q ss_pred             cCCCchhhhHHHHHH
Q 023582          182 QIPNFHKLSWLSILA  196 (280)
Q Consensus       182 ~~r~l~~l~~~S~~~  196 (280)
                      .. .++++-.++..-
T Consensus       321 ~~-Gl~~Ii~~~~Pv  334 (378)
T TIGR00796       321 NL-GLTQIISISIPV  334 (378)
T ss_pred             Hh-CHHHHHHHHHHH
Confidence            33 555555544443

transmembrane helical spanners.

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX

Probab=94.96  E-value=2.5  Score=39.66  Aligned_cols=140  Identities=16%  Similarity=0.139  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcCCcc
Q 023582           38 WVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRS  117 (280)
Q Consensus        38 ~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~~g  117 (280)
                      |....+|+.+-..|+....       .++.-+++..++..++...-..+....-.    +.   ..++.-++|..||++|
T Consensus         7 W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~----~~---Gl~~~v~sR~~FG~~G   72 (386)
T TIGR02358         7 WFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGA----DT---GLSAMGSLKLSLGSKG   72 (386)
T ss_pred             HHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhc----cc---CcCHHHHHHHHHccch
Confidence            6666777777777653321       33332333333322222222223333211    11   4689999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhHHHHHHH
Q 023582          118 VQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAA  197 (280)
Q Consensus       118 ~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~~S~~~~  197 (280)
                      .++..+...+...|=-.......|+.++.+.+.....         .+...++++..++..+.++. -.+.++++..++.
T Consensus        73 s~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~---------~~~~~~~~i~~~l~~~~~~~-G~~~i~~~~~~~~  142 (386)
T TIGR02358        73 SVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE---------ESPMLWILIVGILVTLWLLS-GPLAFVWLNNWSV  142 (386)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            9999999999988888888888999999887532110         01123445555555555543 4455666665555


Q ss_pred             HHHH
Q 023582          198 VMSF  201 (280)
Q Consensus       198 ~~~~  201 (280)
                      ....
T Consensus       143 ~~~~  146 (386)
T TIGR02358       143 WLLL  146 (386)
T ss_pred             HHHH
Confidence            4433

On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=94.95  E-value=0.098  Score=51.43  Aligned_cols=229  Identities=9%  Similarity=-0.052  Sum_probs=123.8

Q ss_pred             cccccchHHHHHHHHHHhHhhhhhhH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582           31 RAKRTGTWVTASAHIITAVIGSGVLS-LAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV  109 (280)
Q Consensus        31 ~~~~~~s~~~a~~~l~~~~iG~GiL~-lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~  109 (280)
                      +-+|..+.+.-...=+...+|+|++- ...+.++.|-..-++-.++.+...+.+..-+.|..-..+ +.   .-++-.-+
T Consensus        27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P-~~---aGs~~~ya  102 (554)
T KOG1286|consen   27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFP-VS---AGSFYTYA  102 (554)
T ss_pred             hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecc-cc---cccceeee
Confidence            45666677776777778999999987 478888888766666666677777777777888543222 11   01344445


Q ss_pred             HHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhh-hcccccCCCccccccCCchhHHH--HHHHHHHHhcCCCc
Q 023582          110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKR-SNCFHRHGHHVKCYTSNNPLMII--FACIQIVLSQIPNF  186 (280)
Q Consensus       110 ~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~i--~~~i~~pl~~~r~l  186 (280)
                      ++..|+.+.-++.+-.+++..-.+-+-....+..++.+.. .......+     ..+...|..+  ..++++.+.-.|-+
T Consensus       103 ~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~-----~~~~~~~~~~fla~~v~in~~gv~~~  177 (554)
T KOG1286|consen  103 YRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVD-----TVNPGGWIPDFLAFILIINLFGVLAY  177 (554)
T ss_pred             eeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccccccccc-----CCCCCccHHHHHHHHHHHHHHHHhhc
Confidence            5666777667777777777666666666666666666540 00000000     1111233322  22344555555554


Q ss_pred             hhhhHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccc-cCCCCCc-hhHHHHHHHHHHHHHHHhcCchhhHhhh
Q 023582          187 HKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT-VGVDVSA-SEKVWRAFQAIGDVAFAYAFSTVLVEIQ  264 (280)
Q Consensus       187 ~~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~-~~~~~~~-~~~~~~~~~a~g~~~faf~~~~vi~~I~  264 (280)
                      -....++.+.-+....- ++++.+.+.-+.. +.++....+.. |.+.-.. +..+.+.+.++.+..|+|.|...+-..-
T Consensus       178 ge~ef~~~~~kvl~~v~-~~Il~iVi~~G~~-~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a  255 (554)
T KOG1286|consen  178 GEVEFSLAFNKILTAVG-FIILAIVIIAGGG-PADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTA  255 (554)
T ss_pred             cceeehHHHHHHHHHHH-HHHhheeeecCCC-cCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHH
Confidence            55555444443332221 1112222222211 11110111111 1100001 1224577899999999999998888777


Q ss_pred             hCCCcc
Q 023582          265 ASPISK  270 (280)
Q Consensus       265 ~~M~~~  270 (280)
                      .|-|++
T Consensus       256 ~E~kNP  261 (554)
T KOG1286|consen  256 EEAKNP  261 (554)
T ss_pred             HhccCC
Confidence            777763

>TIGR02119 panF sodium/pantothenate symporter

Probab=94.46  E-value=2.4  Score=40.69  Aligned_cols=149  Identities=10%  Similarity=0.064  Sum_probs=90.9

Q ss_pred             cccccccchHHHHHHHHHHhHhhhhh-hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----HHHcccCCCCCCCCCcc
Q 023582           29 DGRAKRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFITYYTSTL----LSDCYRSPDPVTGKRNY  103 (280)
Q Consensus        29 ~~~~~~~~s~~~a~~~l~~~~iG~Gi-L~lP~a~~~~G~i~g~ill~~~~~i~~yt~~l----L~~~~~~~~~~~g~~~~  103 (280)
                      .-.-.|+.+++...+.+..+.+|++. ++.|-...+.|+.+...... .....+.+..+    +.+..|+.      +..
T Consensus        35 y~~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~  107 (471)
T TIGR02119        35 YFLGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMI-QVPTGYFVLGVLGKKFAIISRKY------NAI  107 (471)
T ss_pred             eeEeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHc------CCc
Confidence            34456677888888999888887665 45787777777642111110 00111111122    22222321      267


Q ss_pred             cHHHHHHHHcCCcc-hhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhc
Q 023582          104 TYMDVVRASLGGRS-VQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ  182 (280)
Q Consensus       104 sy~~i~~~~~G~~g-~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~  182 (280)
                      |..|.-++-||++. +.+..+...+.+++...+.+...+..++.++..              +...-+++..+++...+.
T Consensus       108 T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi--------------~~~~~iii~~~iv~iYt~  173 (471)
T TIGR02119       108 TINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL--------------SYLTALFIFSSSVLIYTT  173 (471)
T ss_pred             cHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHH
Confidence            99999999999654 677778887777777777777777777776531              111234455555666677


Q ss_pred             CCCchhhhHHHHHHHH
Q 023582          183 IPNFHKLSWLSILAAV  198 (280)
Q Consensus       183 ~r~l~~l~~~S~~~~~  198 (280)
                      .--++...+...+=.+
T Consensus       174 ~GG~~av~~td~iQ~~  189 (471)
T TIGR02119       174 FGGFRAVALTDAIQGI  189 (471)
T ss_pred             hhhHHHHHHHHHHHHH
Confidence            7778888877665543

Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.

>PRK12488 acetate permease; Provisional

Probab=94.34  E-value=2.6  Score=41.52  Aligned_cols=151  Identities=17%  Similarity=0.177  Sum_probs=92.1

Q ss_pred             CccccccccchHHHHHHHHHHhHhhhhh-hHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHcccCCCCCCCCCccc
Q 023582           27 DDDGRAKRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFITYYT-STLLSDCYRSPDPVTGKRNYT  104 (280)
Q Consensus        27 ~~~~~~~~~~s~~~a~~~l~~~~iG~Gi-L~lP~a~~~~G~i~g~ill~~~~~i~~yt-~~lL~~~~~~~~~~~g~~~~s  104 (280)
                      +|.-.-.|+-+++...+.+..+.++++. ++.|-...+.|+- +... .+...+.+.- ..++.+-.|+    .|  ..|
T Consensus        60 ~df~laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~-~~g~~~g~~~~~~~~a~~lr~----~g--~~T  131 (549)
T PRK12488         60 SDFYTAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLY-ALGVLAGWPIILFLIAERLRN----LG--KYT  131 (549)
T ss_pred             HHHeeeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHH-HHHHHHHHHHHHHHHHHHHHH----CC--Ccc
Confidence            3444556677888888888888776664 7799888888864 2211 1111112111 2334433332    12  579


Q ss_pred             HHHHHHHHcC-CcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcC
Q 023582          105 YMDVVRASLG-GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI  183 (280)
Q Consensus       105 y~~i~~~~~G-~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~  183 (280)
                      ..|.-++-|| |+.|.+..+...+.++.-..+.+...|..++.++..              +...-+++..+++..-+..
T Consensus       132 ~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi--------------~~~~~iii~~~i~~~Yt~~  197 (549)
T PRK12488        132 FADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI--------------SYLYAVVIVGALMVLYVTF  197 (549)
T ss_pred             hHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHhc
Confidence            9998888887 568888888777777766677777777777766531              1112234455556666666


Q ss_pred             CCchhhhHHHHHHHHH
Q 023582          184 PNFHKLSWLSILAAVM  199 (280)
Q Consensus       184 r~l~~l~~~S~~~~~~  199 (280)
                      -=++...+...+=.+.
T Consensus       198 GGm~av~~td~iQ~~i  213 (549)
T PRK12488        198 GGMLATTWVQIIKAVL  213 (549)
T ss_pred             cchhHHHHHHHHHHHH
Confidence            6777777776655443

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells

Probab=94.06  E-value=0.76  Score=43.14  Aligned_cols=145  Identities=12%  Similarity=0.197  Sum_probs=80.4

Q ss_pred             ccchHHHHHHHHHHhHhhh-hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHH
Q 023582           34 RTGTWVTASAHIITAVIGS-GVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS  112 (280)
Q Consensus        34 ~~~s~~~a~~~l~~~~iG~-GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~  112 (280)
                      |+.+++...+.+..+.+|+ ..++.|-...+.|+. +....+...........++.+-.|+.    +  ..|..|.-++-
T Consensus         6 r~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~r~~----~--~~T~~e~~~~R   78 (406)
T PF00474_consen    6 RSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGIS-GLWYAIGYAIGFLLFALFFAPRLRRS----G--AVTIPEYLEKR   78 (406)
T ss_dssp             S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GG-GGHHHHHHHHHHHHHHHHTHHHHHHT----T----SHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-eeeeccccchhHHHHHHHHHHhhccc----c--hhhhhhhhhhh
Confidence            4556778888888877766 566789888888875 33333333333333444455544421    2  67999999999


Q ss_pred             cCCcc--hhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhh
Q 023582          113 LGGRS--VQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLS  190 (280)
Q Consensus       113 ~G~~g--~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~  190 (280)
                      ||++.  +.+..+...+.........+...+..++.+++.              +....+++..++++..+..==++...
T Consensus        79 yg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi--------------~~~~~~~i~~~i~~iYt~~GGl~av~  144 (406)
T PF00474_consen   79 YGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI--------------PYNTAILIVGVIVIIYTFFGGLRAVA  144 (406)
T ss_dssp             T-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHHHTTCTT------
T ss_pred             cCCchhhhhhcccccchhhhhhhhccccccccchhhccch--------------hhhHHHHHHHHHHHHhhhhhhHhhhh
Confidence            99988  665555566666666667677777777766531              11223445555555566666677777


Q ss_pred             HHHHHHHHH
Q 023582          191 WLSILAAVM  199 (280)
Q Consensus       191 ~~S~~~~~~  199 (280)
                      +...+=.+.
T Consensus       145 ~td~iQ~~i  153 (406)
T PF00474_consen  145 WTDFIQGVI  153 (406)
T ss_dssp             SHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666554443

Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.

>PRK09442 panF sodium/panthothenate symporter; Provisional

Probab=93.86  E-value=2.7  Score=40.61  Aligned_cols=150  Identities=13%  Similarity=0.074  Sum_probs=85.2

Q ss_pred             cccccccchHHHHHHHHHHhHhhh-hhhHHHHHHHHHhhhHHHHHH--HHHHHHH-HHHHHHHHHcccCCCCCCCCCccc
Q 023582           29 DGRAKRTGTWVTASAHIITAVIGS-GVLSLAWAIAQLGWVAGPAVL--MAFSFIT-YYTSTLLSDCYRSPDPVTGKRNYT  104 (280)
Q Consensus        29 ~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~a~~~~G~i~g~ill--~~~~~i~-~yt~~lL~~~~~~~~~~~g~~~~s  104 (280)
                      .-.-.|+.+++...+.+..+.+|+ ..++.|-...+.|+-+.....  .....++ .+-+..+.+..|+.      +..|
T Consensus        36 y~~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~------~~~T  109 (483)
T PRK09442         36 YFLGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY------NAVT  109 (483)
T ss_pred             eeeeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCcc
Confidence            334466667888888887776665 556678666666753211110  0111111 11222222323322      2679


Q ss_pred             HHHHHHHHcCCcc-hhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcC
Q 023582          105 YMDVVRASLGGRS-VQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI  183 (280)
Q Consensus       105 y~~i~~~~~G~~g-~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~  183 (280)
                      ..|.-++-||++. +.+..+...+..+....+.+...|..++.++.              ++...-+++..+++...+..
T Consensus       110 ~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~  175 (483)
T PRK09442        110 LNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------------ISYETGLLIFGITVALYTAF  175 (483)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHh
Confidence            9999999999764 55555555655555556666667777776653              11122344555566667777


Q ss_pred             CCchhhhHHHHHHHH
Q 023582          184 PNFHKLSWLSILAAV  198 (280)
Q Consensus       184 r~l~~l~~~S~~~~~  198 (280)
                      --++...+.-.+=.+
T Consensus       176 GGl~av~~TD~iQ~~  190 (483)
T PRK09442        176 GGFRAVVLTDALQGI  190 (483)
T ss_pred             ccHHHHHHHHHHHHH
Confidence            778877776665544

>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V))

Probab=93.72  E-value=0.86  Score=43.39  Aligned_cols=79  Identities=13%  Similarity=0.227  Sum_probs=58.9

Q ss_pred             cccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHh
Q 023582          102 NYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLS  181 (280)
Q Consensus       102 ~~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~  181 (280)
                      ..-..+++++.+|+.|..+..+.+.+.|+-+|++-....+|.++++++.             .+-..|.+++.++-+.++
T Consensus       260 ~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k-------------isY~~~v~i~~i~S~~ia  326 (427)
T PF05525_consen  260 AELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPK-------------ISYKVWVIIFTIFSFIIA  326 (427)
T ss_pred             HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------cChHHHHHHHHHHHHHHH
Confidence            3457889999999999999999999999999999999999999988751             222456666666656555


Q ss_pred             cCCCchhhhHHHH
Q 023582          182 QIPNFHKLSWLSI  194 (280)
Q Consensus       182 ~~r~l~~l~~~S~  194 (280)
                      .. -++++=.+|.
T Consensus       327 n~-Gl~~Ii~~s~  338 (427)
T PF05525_consen  327 NL-GLDQIIKISV  338 (427)
T ss_pred             Hh-CHHHHHHHHH
Confidence            33 3444444443

They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane

>TIGR00813 sss transporter, SSS family

Probab=93.51  E-value=2.3  Score=39.96  Aligned_cols=145  Identities=14%  Similarity=0.142  Sum_probs=87.6

Q ss_pred             ccchHHHHHHHHHHhHhhh-hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHH
Q 023582           34 RTGTWVTASAHIITAVIGS-GVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS  112 (280)
Q Consensus        34 ~~~s~~~a~~~l~~~~iG~-GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~  112 (280)
                      |+-+++...+.+..+.+|+ ..++.|-...+.|+. +................+..+..|+.    |  ..|..|.-+.-
T Consensus         3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~T~~e~l~~R   75 (407)
T TIGR00813         3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFINN----G--AYTMPEYLEKR   75 (407)
T ss_pred             CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHc----C--CCchhHHHHHH
Confidence            4456677777777665554 456688777777853 22222222222333344444443321    2  67999999999


Q ss_pred             cCC-cchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhH
Q 023582          113 LGG-RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSW  191 (280)
Q Consensus       113 ~G~-~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~  191 (280)
                      ||+ ..+.+..+...+..+....+.+...+..++.++..              +...-+++..++++..+..--++...+
T Consensus        76 yg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi--------------~~~~~~ii~~~i~~~Yt~~GG~~av~~  141 (407)
T TIGR00813        76 FGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITGL--------------DLYLSLLLLGAITILYTVFGGLKAVVW  141 (407)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--------------hHHHHHHHHHHHHHHHHHHcchHHHHH
Confidence            998 46666677777777777778778888888776531              111223444455555566666777777


Q ss_pred             HHHHHHHH
Q 023582          192 LSILAAVM  199 (280)
Q Consensus       192 ~S~~~~~~  199 (280)
                      .-.+=.+.
T Consensus       142 Td~iQ~~i  149 (407)
T TIGR00813       142 TDTIQAVI  149 (407)
T ss_pred             HHHHHHHH
Confidence            66655443

have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.

>PRK11017 codB cytosine permease; Provisional

Probab=92.88  E-value=4.8  Score=37.98  Aligned_cols=83  Identities=17%  Similarity=0.083  Sum_probs=52.4

Q ss_pred             cccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHh
Q 023582          102 NYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLS  181 (280)
Q Consensus       102 ~~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~  181 (280)
                      ..++.-++|..||++|.++..+...+...|=........++.++++..              .+...+.+++.++..+.+
T Consensus        70 G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~--------------~~~~~~~~i~~~l~~~~~  135 (404)
T PRK11017         70 GLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG--------------LDINLLIVLSGLLMTVTA  135 (404)
T ss_pred             CcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHH
Confidence            479999999999999999988888887776555555556666655432              011124455555555554


Q ss_pred             cC--CCchhhhHHHHHHHH
Q 023582          182 QI--PNFHKLSWLSILAAV  198 (280)
Q Consensus       182 ~~--r~l~~l~~~S~~~~~  198 (280)
                      ..  |.++.+..++.....
T Consensus       136 ~~G~~~i~~~~~~~~p~~~  154 (404)
T PRK11017        136 YFGISALTILSRIAVPAIA  154 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            43  445555555554443

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=92.67  E-value=4.2  Score=38.94  Aligned_cols=86  Identities=19%  Similarity=0.167  Sum_probs=58.9

Q ss_pred             cHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhc-
Q 023582          104 TYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ-  182 (280)
Q Consensus       104 sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~-  182 (280)
                      +=-.++|..||++|.++..+++.+.+.|-.....+..++...+.            .  ..+...++++.++++...++ 
T Consensus        82 pqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~------------~--~~~~~~~ili~g~l~~l~~if  147 (442)
T COG1457          82 PQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG------------T--GLPVWAGILIIGVLMTLVTIF  147 (442)
T ss_pred             ChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC------------C--CCcHHHHHHHHHHHHHHHHHH
Confidence            33456788899999999999999999999999999988872111            1  12224556666666555554 


Q ss_pred             -CCCchhhhHHHHHHHHHHHHH
Q 023582          183 -IPNFHKLSWLSILAAVMSFAY  203 (280)
Q Consensus       183 -~r~l~~l~~~S~~~~~~~~~~  203 (280)
                       .|-++.+.+++..-.+..+.+
T Consensus       148 G~r~l~~l~~~a~~~~~~lf~~  169 (442)
T COG1457         148 GYRALHKLERIAVPLLLLLFLY  169 (442)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence             355677777776666554443

>PRK09395 actP acetate permease; Provisional

Probab=92.56  E-value=6.8  Score=38.59  Aligned_cols=145  Identities=14%  Similarity=0.125  Sum_probs=82.6

Q ss_pred             cccccchHHHHHHHHHHhHhhh-hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582           31 RAKRTGTWVTASAHIITAVIGS-GVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV  109 (280)
Q Consensus        31 ~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~  109 (280)
                      .-.|+.+++...+.+..+.+++ ..++.|-.....|+.. ........+.......++.+-.|+    .|  .+|+.|.-
T Consensus        66 ~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r~----~g--~~T~~d~l  138 (551)
T PRK09395         66 TAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSIGFLVGWPIILFLIAERLRN----LG--KYTFADVA  138 (551)
T ss_pred             hcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHhh----CC--CccHHHHH
Confidence            4455667777777777776664 4567897777788642 211111111111222333443332    23  57999999


Q ss_pred             HHHcCC-cchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchh
Q 023582          110 RASLGG-RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHK  188 (280)
Q Consensus       110 ~~~~G~-~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~  188 (280)
                      +.-||+ +.|.+..+...+..+.-..+.+...|..++.++.              ++...-+++..+++..-+..-=++.
T Consensus       139 ~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------------i~~~~~ili~~~i~~iYt~~GGm~a  204 (551)
T PRK09395        139 SYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------------LNYHVAVVLVGVLMMVYVLFGGMLA  204 (551)
T ss_pred             HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhhcchHH
Confidence            999984 5777777766665555555555666666666542              1111223444555555566666777


Q ss_pred             hhHHHHHH
Q 023582          189 LSWLSILA  196 (280)
Q Consensus       189 l~~~S~~~  196 (280)
                      ..+.-.+=
T Consensus       205 v~~TD~iQ  212 (551)
T PRK09395        205 TTWVQIIK  212 (551)
T ss_pred             HHHHHHHH
Confidence            66665543

>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily

Probab=91.81  E-value=13  Score=36.71  Aligned_cols=149  Identities=16%  Similarity=0.118  Sum_probs=86.1

Q ss_pred             CccccccccchHHHHHHHHHHhHhhh-hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccH
Q 023582           27 DDDGRAKRTGTWVTASAHIITAVIGS-GVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTY  105 (280)
Q Consensus        27 ~~~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy  105 (280)
                      +|.-.-.|+-+++...+.+..+.+++ ..++.|-.....|+- +................++.+-.|+.    |  ..|-
T Consensus        25 ~dy~laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~-~~~~~~g~~~~~~~~~~~~~p~~rr~----~--~~T~   97 (552)
T TIGR03648        25 SEFYVAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYD-GLAYLMGWTGGYVLLALLLAPYLRKF----G--KYTV   97 (552)
T ss_pred             HHHeeeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHC----C--CccH
Confidence            44455677778898888888887754 567788777777753 21111111111122334555544432    2  5688


Q ss_pred             HHHHHHHcCCc-chhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCC
Q 023582          106 MDVVRASLGGR-SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIP  184 (280)
Q Consensus       106 ~~i~~~~~G~~-g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r  184 (280)
                      .|.-++-||++ .|.+..+...+..+.-....+...+..++.+...              +...-+++..+++..-+..-
T Consensus        98 ~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi--------------~~~~~iii~~~i~~iYt~~G  163 (552)
T TIGR03648        98 PDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV--------------DFETGVFIGMAIVFFYAVLG  163 (552)
T ss_pred             HHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHhh
Confidence            88888888855 5676666666666665566566667776665531              11122344445555556555


Q ss_pred             CchhhhHHHHHH
Q 023582          185 NFHKLSWLSILA  196 (280)
Q Consensus       185 ~l~~l~~~S~~~  196 (280)
                      =++...+.-.+=
T Consensus       164 G~~aV~~TD~iQ  175 (552)
T TIGR03648       164 GMKGVTWTQVAQ  175 (552)
T ss_pred             hHHHHHHHHHHH
Confidence            677666655443

This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]

Probab=91.53  E-value=12  Score=36.38  Aligned_cols=116  Identities=11%  Similarity=-0.062  Sum_probs=78.4

Q ss_pred             CccccccccchHHHHHHHHHHhHhh-hhhhHHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHcccCCCCCCCCCc
Q 023582           27 DDDGRAKRTGTWVTASAHIITAVIG-SGVLSLAWAIAQLGWVAGPAVLM---AFSFITYYTSTLLSDCYRSPDPVTGKRN  102 (280)
Q Consensus        27 ~~~~~~~~~~s~~~a~~~l~~~~iG-~GiL~lP~a~~~~G~i~g~ill~---~~~~i~~yt~~lL~~~~~~~~~~~g~~~  102 (280)
                      ||.....|+-+.+-.......+..+ .-.+++|-...+.|+...-+...   .......+-..-+.+..++      ++.
T Consensus        31 ~dy~~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~------~~~  104 (493)
T COG0591          31 EDYFLGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKA------RGA  104 (493)
T ss_pred             HHHhccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cCC
Confidence            3334445544455666677666666 77888999988888653222222   2222333333333443322      226


Q ss_pred             ccHHHHHHHHcC-CcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHh
Q 023582          103 YTYMDVVRASLG-GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVK  148 (280)
Q Consensus       103 ~sy~~i~~~~~G-~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~  148 (280)
                      .|..|.-+.-|| ++.|.+..+...+..+.-+...+...+..++.++
T Consensus       105 ~T~~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~  151 (493)
T COG0591         105 TTIPDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLF  151 (493)
T ss_pred             ccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            799999999999 8999999999999999999999999998886554

>TIGR02121 Na_Pro_sym sodium/proline symporter

Probab=90.01  E-value=13  Score=35.88  Aligned_cols=153  Identities=11%  Similarity=0.057  Sum_probs=78.9

Q ss_pred             cccccccchHHHHHHHHHHhHhhhh-hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHH
Q 023582           29 DGRAKRTGTWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMD  107 (280)
Q Consensus        29 ~~~~~~~~s~~~a~~~l~~~~iG~G-iL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~  107 (280)
                      .-.-.|+-+++...+.+..+.+++. .++.|-.....|+.. ........+.......++.+-.|...+ .+.+..|-.|
T Consensus        31 f~lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~-~~~~~~T~~e  108 (487)
T TIGR02121        31 YVLGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTE-AAHNSITLPD  108 (487)
T ss_pred             HeeeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhH-hhcCCccHHH
Confidence            3344666678888888877766644 566887777778742 222111112222333444432221100 0112678999


Q ss_pred             HHHHHcCCcchh---hhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCC
Q 023582          108 VVRASLGGRSVQ---LCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIP  184 (280)
Q Consensus       108 i~~~~~G~~g~~---~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r  184 (280)
                      .-+.-||++.+.   +..+...+....-...-+...+..++.+++.              +...-+++..+++..-+..-
T Consensus       109 ~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi--------------~~~~~iii~~~i~~~Yt~~G  174 (487)
T TIGR02121       109 FFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL--------------DYKTGLLIGALIIVIYTFFG  174 (487)
T ss_pred             HHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--------------cHHHHHHHHHHHHHHHHHhh
Confidence            999999965443   3333333333333344444556666655431              11122344445555555555


Q ss_pred             CchhhhHHHHHHH
Q 023582          185 NFHKLSWLSILAA  197 (280)
Q Consensus       185 ~l~~l~~~S~~~~  197 (280)
                      =++...+.-.+=.
T Consensus       175 Gl~av~~TD~iQ~  187 (487)
T TIGR02121       175 GFLAVSWTDFVQG  187 (487)
T ss_pred             hHHHHHHHHHHHH
Confidence            6666666655443

This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.

>TIGR02711 symport_actP cation/acetate symporter ActP

Probab=89.99  E-value=21  Score=35.19  Aligned_cols=145  Identities=14%  Similarity=0.149  Sum_probs=82.9

Q ss_pred             cccccchHHHHHHHHHHhHhh-hhhhHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHcccCCCCCCCCCcccHHHH
Q 023582           31 RAKRTGTWVTASAHIITAVIG-SGVLSLAWAIAQLGWVAGPAVLMAFSFITY-YTSTLLSDCYRSPDPVTGKRNYTYMDV  108 (280)
Q Consensus        31 ~~~~~~s~~~a~~~l~~~~iG-~GiL~lP~a~~~~G~i~g~ill~~~~~i~~-yt~~lL~~~~~~~~~~~g~~~~sy~~i  108 (280)
                      .-.|+.+++...+.+..+.++ ...++.|-...+.|+- +....+ ...+.+ ....++.+-.|+    .|  .+|..|.
T Consensus        64 laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~-g~~~~~~i~~~~~a~~lrr----~g--~~T~~d~  135 (549)
T TIGR02711        64 TAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSL-GFLVGWPIILFLIAERLRN----LG--RYTFADV  135 (549)
T ss_pred             eeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHH-HHHHHHHHHHHHHHHHHHH----cC--CccHHHH
Confidence            345555677777777776554 5678899777777864 222211 111121 223344443332    23  5799999


Q ss_pred             HHHHcC-CcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCch
Q 023582          109 VRASLG-GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFH  187 (280)
Q Consensus       109 ~~~~~G-~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~  187 (280)
                      -++-|| |..|.+..+...+.++.-....+...|..++.++..              +...-+++..+++..-+..-=++
T Consensus       136 l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi--------------~~~~~iii~~~i~~~Yt~~GGm~  201 (549)
T TIGR02711       136 ASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL--------------NYHVAVVLVGILMVMYVLFGGML  201 (549)
T ss_pred             HHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHhhhhH
Confidence            888887 456777666666665555566666677777666531              11122344555555556666677


Q ss_pred             hhhHHHHHHH
Q 023582          188 KLSWLSILAA  197 (280)
Q Consensus       188 ~l~~~S~~~~  197 (280)
                      ...+...+=.
T Consensus       202 av~~td~iQ~  211 (549)
T TIGR02711       202 ATTWVQIIKA  211 (549)
T ss_pred             HHHHHHHHHH
Confidence            7777655543

Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.

>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines

Probab=89.52  E-value=5.4  Score=37.82  Aligned_cols=49  Identities=24%  Similarity=0.144  Sum_probs=40.9

Q ss_pred             cccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhh
Q 023582          102 NYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRS  150 (280)
Q Consensus       102 ~~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~  150 (280)
                      ..++.-++|..||.+|..+..+...+...|=...-..+.++.+..+.+.
T Consensus        70 Gl~~~v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~  118 (440)
T PF02133_consen   70 GLPTMVLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGI  118 (440)
T ss_dssp             ---HHHHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCchhcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3688999999999999999999999999988888888999999988864

Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.

>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]

Probab=89.32  E-value=5.6  Score=37.64  Aligned_cols=81  Identities=14%  Similarity=0.219  Sum_probs=61.8

Q ss_pred             ccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhc
Q 023582          103 YTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ  182 (280)
Q Consensus       103 ~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~  182 (280)
                      .=..+..++.||+.|+.+..+++.+.|+-++++-+...+|.++++.+.             ++-..|..++.++-+.++.
T Consensus       263 ~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~-------------~SY~~~v~if~i~sflvan  329 (431)
T COG1114         263 QILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPK-------------LSYKTWVIIFTLISFLVAN  329 (431)
T ss_pred             HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------ccHHHHHHHHHHHHHHHHH
Confidence            457788999999999999999999999999999999999999988752             2223566666666666664


Q ss_pred             CCCchhhhHHHHHHH
Q 023582          183 IPNFHKLSWLSILAA  197 (280)
Q Consensus       183 ~r~l~~l~~~S~~~~  197 (280)
                      . .++++-.+|..-.
T Consensus       330 ~-GL~~Ii~isvPvL  343 (431)
T COG1114         330 L-GLEQIIKISVPVL  343 (431)
T ss_pred             h-hHHHHHHHHHHHH
Confidence            4 4555655555443

>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional

Probab=85.69  E-value=11  Score=36.14  Aligned_cols=76  Identities=17%  Similarity=0.236  Sum_probs=56.0

Q ss_pred             cHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcC
Q 023582          104 TYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI  183 (280)
Q Consensus       104 sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~  183 (280)
                      =...+.++.+|++++.+..+.+.+.|+-++++-.-..++.+++.++              .+...|.++..++.++++..
T Consensus       266 il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~--------------isY~~~v~i~~l~S~~lSn~  331 (439)
T PRK15433        266 ILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP--------------LSYRTLVFILGGFSMVVSNL  331 (439)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CcHHHHHHHHHHHHHHHHHh
Confidence            3566788999999999999999999999999999999999887653              12235666666777777754


Q ss_pred             CCchhhhHHHH
Q 023582          184 PNFHKLSWLSI  194 (280)
Q Consensus       184 r~l~~l~~~S~  194 (280)
                       -++++=.++.
T Consensus       332 -G~~~II~~s~  341 (439)
T PRK15433        332 -GLSQLIQISV  341 (439)
T ss_pred             -HHHHHHHHHH
Confidence             3444333333

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=85.35  E-value=36  Score=32.64  Aligned_cols=70  Identities=13%  Similarity=0.097  Sum_probs=37.7

Q ss_pred             hhhHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHcccCCCCCCCCCcccHHHHHHHHcCCcchhhhHHHHHHHH
Q 023582           53 GVLSLAWAIAQLGWVAGPAVLMAFSFITYY-TSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNL  129 (280)
Q Consensus        53 GiL~lP~a~~~~G~i~g~ill~~~~~i~~y-t~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~~g~~~v~i~~~~~~  129 (280)
                      ++..+|.+ ++.|.. .++..++.+++... .+....|.....+. .|    ..-.-.++++|+++..+..+..++..
T Consensus        18 ~~~~~~~~-a~~G~~-~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~G----G~y~~~~~a~G~~~gf~~gw~~w~~~   88 (474)
T TIGR03813        18 SLRGLPAE-AEYGLS-AAFYYLFAAIFFLVPVSLVAAELATAWPE-KG----GVFRWVGEAFGARWGFLAIFMLWAQV   88 (474)
T ss_pred             HhhcchHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCC-CC----CceeeHhhhcChhHHHHHHHHHHHHH
Confidence            34556755 677842 23333333333322 44445565443322 22    33455688899988887777666654

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=82.62  E-value=14  Score=36.14  Aligned_cols=53  Identities=13%  Similarity=0.125  Sum_probs=21.0

Q ss_pred             hHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHcc
Q 023582           37 TWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAV-LMAFSFITYYTSTLLSDCY   91 (280)
Q Consensus        37 s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~il-l~~~~~i~~yt~~lL~~~~   91 (280)
                      +.+...|.++....|. .-+|.+.+..+|-. +.+. .++.+....-.+.=|.|..
T Consensus        54 s~fg~sFs~~g~~~~i-~tsm~~gl~~gG~~-~~vwgwlIa~~~~i~va~slaEl~  107 (550)
T KOG1289|consen   54 SIFGISFSLMGLLPGI-ATSMAYGLGSGGPP-TLVWGWLIAGFFSICVALSLAELC  107 (550)
T ss_pred             HHHHHHHHHhcchhhh-hhheeeccccCChH-HHHHHHHHHHHHHHHHHhHHHHHH
Confidence            3334444444433332 22344444444422 2221 2233334444445566643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	280
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.81
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	98.42
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	97.29
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	97.01
2xq2_A	593	Sodium/glucose cotransporter; transport protein, i	88.93
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	88.29

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=98.81  E-value=1.1e-07  Score=88.57  Aligned_cols=215  Identities=10%  Similarity=-0.057  Sum_probs=127.9

Q ss_pred             ccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHH
Q 023582           32 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA  111 (280)
Q Consensus        32 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~  111 (280)
                      ++|+-+.++..+..+.+++|+|++.+|...++.|.. +.+..++.+++.......+.|.....+.     .-+.-+..++
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~-----~Gg~y~~~~~   79 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPS-----PGGSYAYARR   79 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC-----TTTHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCC-----CCCchhhHHh
Confidence            456778999999999999999999999998888864 6777777777777777777786543321     2256666789


Q ss_pred             HcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhH
Q 023582          112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSW  191 (280)
Q Consensus       112 ~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~  191 (280)
                      .+||+...++.+..++.......++....++.++..++..      . .  ......+.++..++ +-+.-.+..+..++
T Consensus        80 ~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~--~~~~~~~~~~~~~~-~~~in~~g~~~~~~  149 (445)
T 3l1l_A           80 CFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL------K-D--PWVLTITCVVVLWI-FVLLNIVGPKMITR  149 (445)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG------G-S--HHHHHHHHHHHHHH-HHHHHHHCHHHHHH
T ss_pred             HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc------c-c--cHHHHHHHHHHHHH-HHHHHHhchHHHHH
Confidence            9999999999998888877777777777777766544310      0 0  01001111111111 22222345555666


Q ss_pred             HHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCcc
Q 023582          192 LSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISK  270 (280)
Q Consensus       192 ~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~  270 (280)
                      +..+.....+....+.+...+....  ++ .. .++  +.+  .....+.+.+.++...+|+|.|......+-+|+|++
T Consensus       150 ~~~~~~~~~i~~~~~~~i~~~~~~~--~~-~~-~~~--~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p  220 (445)
T 3l1l_A          150 VQAVATVLALIPIVGIAVFGWFWFR--GE-TY-MAA--WNV--SGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP  220 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTCC--CC-CC-CCC---------------HHHHHHHHHHTTTTTTHHHHGGGGBSSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC--hh-hc-ccc--cCc--cCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc
Confidence            5544443322211111212221111  10 00 011  111  111234567789999999999999999999999984

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=98.42  E-value=9.3e-06  Score=75.38  Aligned_cols=213  Identities=8%  Similarity=-0.027  Sum_probs=123.2

Q ss_pred             ccccchHHHHHHHHHHhHhhhhhhHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHH
Q 023582           32 AKRTGTWVTASAHIITAVIGSGVLSLA-WAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR  110 (280)
Q Consensus        32 ~~~~~s~~~a~~~l~~~~iG~GiL~lP-~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~  110 (280)
                      ++|+-+.++.....+..++|+|++..| .+.+..|- ...+..++.+++.......+.|.....++     .-..-+..+
T Consensus         4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~-----~Gg~y~~~~   77 (444)
T 3gia_A            4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVS-----NAGPIAFIH   77 (444)
T ss_dssp             CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCC-----TTTHHHHHH
T ss_pred             cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----CCcHHHhHH
Confidence            356778999999999999999999876 55566675 56677777788888888888887654432     225667788


Q ss_pred             HHcCCcc-hhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhh
Q 023582          111 ASLGGRS-VQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL  189 (280)
Q Consensus       111 ~~~G~~g-~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l  189 (280)
                      +.+|++. .-.+.+..++.....+..+....++.+..+++..      . .  ......+.++.. +.+-+.-.+..+..
T Consensus        78 ~~~G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~-~--~~~~~~~~~~~~-~~~~~in~~g~~~~  147 (444)
T 3gia_A           78 KAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAP------I-N--TFNIAITEIGIV-AFFTALNFFGSKAV  147 (444)
T ss_dssp             HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------C-C--HHHHHHHHHHHH-HHHHHHHHHTHHHH
T ss_pred             HHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------C-c--hHHHHHHHHHHH-HHHHHHHHHhHHHH
Confidence            8899963 1223455555555566666777777777655310      0 0  000001111111 11222223355555


Q ss_pred             hHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCc
Q 023582          190 SWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPIS  269 (280)
Q Consensus       190 ~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~  269 (280)
                      +++..+.....+....+.+...+....  ++   +     +.|. ..+..+.+.+.++...+|+|.|......+-+|+|+
T Consensus       148 ~~~~~~~~~~~i~~~~~~ii~~~~~~~--~~---~-----~~~~-~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~  216 (444)
T 3gia_A          148 GRAEFFIVLVKLLILGLFIFAGLITIH--PS---Y-----VIPD-LAPSAVSGMIFASAIFFLSYMGFGVITNASEHIEN  216 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCC--GG---G-----TSCC-CSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcC--hh---h-----cCCC-CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccC
Confidence            555544433222211111111211111  10   0     1111 12334557788899999999999999999999988


Q ss_pred             cc
Q 023582          270 KI  271 (280)
Q Consensus       270 ~~  271 (280)
                      +.
T Consensus       217 P~  218 (444)
T 3gia_A          217 PK  218 (444)
T ss_dssp             HH
T ss_pred             cc
Confidence            53

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=97.29  E-value=0.0016  Score=61.18  Aligned_cols=107  Identities=13%  Similarity=0.002  Sum_probs=65.2

Q ss_pred             ccccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHccc--CCCCCCCCCcccH
Q 023582           30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITY--YTSTLLSDCYR--SPDPVTGKRNYTY  105 (280)
Q Consensus        30 ~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~--yt~~lL~~~~~--~~~~~~g~~~~sy  105 (280)
                      .+.+|+-++++.....+..++|  +.++|. .+..|..  .++..+++.+..  .....+.|...  ..+  .|    ..
T Consensus         7 ~~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~--~~~~~~i~~~~~~l~~al~~ael~s~~~~P--~G----G~   75 (511)
T 4djk_A            7 TGKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS--LVFFLLLGGILWFIPVGLCAAEMATVDGWE--EG----GV   75 (511)
T ss_dssp             -----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH--HHHHHHHHHHHTHHHHHHHHHHHHTTSCC---------CH
T ss_pred             CccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHcccccCC--CC----Ch
Confidence            3446677899999988888886  567775 4566643  333333333332  25566667554  432  22    55


Q ss_pred             HHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHH
Q 023582          106 MDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAV  147 (280)
Q Consensus       106 ~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l  147 (280)
                      -...++.+||+...+..+..++.......++....++.+..+
T Consensus        76 y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  117 (511)
T 4djk_A           76 FAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYI  117 (511)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred             hhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788899998888888888877766666666666665443

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=97.01  E-value=0.011  Score=55.94  Aligned_cols=88  Identities=14%  Similarity=0.118  Sum_probs=62.6

Q ss_pred             cccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHh
Q 023582          102 NYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLS  181 (280)
Q Consensus       102 ~~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~  181 (280)
                      ..+|..+.|..||++|..+..++..+.++|-........|+.+..++.... .   ..     +....++++.++.++++
T Consensus        87 Gl~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~-g---~~-----~~~v~~~i~~~l~~~~~  157 (501)
T 2jln_A           87 GINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT-G---FT-----NLPLWIVIFGAIQVVTT  157 (501)
T ss_dssp             CCCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C---CC-----CHHHHHHHHHHHHHHHH
T ss_pred             CCChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---cc-----hHHHHHHHHHHHHHHHH
Confidence            357999999999999999999999999999888888889999988764221 0   00     01233455666666766


Q ss_pred             cCCCchhhhHHHHHHHHH
Q 023582          182 QIPNFHKLSWLSILAAVM  199 (280)
Q Consensus       182 ~~r~l~~l~~~S~~~~~~  199 (280)
                      +. -++.++++..++...
T Consensus       158 ~~-G~~~i~~~~~~~~p~  174 (501)
T 2jln_A          158 FY-GITFIRWMNVFASPV  174 (501)
T ss_dssp             TT-HHHHHHHHHHHHHHH
T ss_pred             Hh-CHHHHHHHHHHHHHH
Confidence            44 567776666665443

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A

Probab=88.93  E-value=5.9  Score=37.95  Aligned_cols=145  Identities=10%  Similarity=0.146  Sum_probs=74.2

Q ss_pred             cccchHHHHHHHHHHhHhhhh-hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHH
Q 023582           33 KRTGTWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA  111 (280)
Q Consensus        33 ~~~~s~~~a~~~l~~~~iG~G-iL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~  111 (280)
                      .|+.+++...+.+..+.+++. .++.|-...+.|+........ .+......+..+..-.++    .|  ..|..|.-++
T Consensus        48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r----~~--~~T~~e~l~~  120 (593)
T 2xq2_A           48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIE----KG--IYTIPEFVEK  120 (593)
T ss_dssp             ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHH----TT--CCSHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHh----CC--CCCcHHHHHH
Confidence            466678888888876665554 468898878888642211111 011111112222222222    12  6799999999


Q ss_pred             HcCCcchhhhHHHHHH-HHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhh
Q 023582          112 SLGGRSVQLCGLAQYG-NLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLS  190 (280)
Q Consensus       112 ~~G~~g~~~v~i~~~~-~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~  190 (280)
                      -||++.+.+..++..+ +.+....+-+...+..++.++.              ++...-+++.++++...+..-=++...
T Consensus       121 Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------------i~~~~~i~i~~~i~~~Yt~~GGl~av~  186 (593)
T 2xq2_A          121 RFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALVYSIYGGLSAVV  186 (593)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHTTC---CC
T ss_pred             HccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------ccHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            9999888776655443 2222223333345566666543              111122344455556666666677766


Q ss_pred             HHHHHHHH
Q 023582          191 WLSILAAV  198 (280)
Q Consensus       191 ~~S~~~~~  198 (280)
                      +.-.+=.+
T Consensus       187 ~TD~iQ~i  194 (593)
T 2xq2_A          187 WTDVIQVF  194 (593)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66554443

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}

Probab=88.29  E-value=7  Score=36.86  Aligned_cols=148  Identities=10%  Similarity=0.132  Sum_probs=77.5

Q ss_pred             cccccchHHHHHHHHHHhHhhh-hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582           31 RAKRTGTWVTASAHIITAVIGS-GVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV  109 (280)
Q Consensus        31 ~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~  109 (280)
                      .-.|+-+++...+.+..+.+++ -.+++|-.....|+........ .++.-...+..+....++.      +..|..|.-
T Consensus        17 laGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~------~~~T~~e~l   89 (530)
T 3dh4_A           17 XAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEK------GIYTIPEFV   89 (530)
T ss_dssp             CCCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT------TCCSHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHHc------CCccHHHHH
Confidence            3456667888888887776655 4677898888888653211111 1111111222223322221      267999999


Q ss_pred             HHHcCCcchhhhHHHHHH-HHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchh
Q 023582          110 RASLGGRSVQLCGLAQYG-NLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHK  188 (280)
Q Consensus       110 ~~~~G~~g~~~v~i~~~~-~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~  188 (280)
                      ++-||++.+.+..++..+ +.+..+.+-+...+..++.++.              ++...-+++.++++..-+..-=++.
T Consensus        90 ~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G--------------i~~~~~i~i~~~i~~~Yt~~GGl~a  155 (530)
T 3dh4_A           90 EKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALVYSIYGGLSA  155 (530)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--------------CCHHHHHHHHHHHHHHTTC------
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhcchHH
Confidence            999999888777665443 2222233333344555555542              1111223445555566666667777


Q ss_pred             hhHHHHHHHHH
Q 023582          189 LSWLSILAAVM  199 (280)
Q Consensus       189 l~~~S~~~~~~  199 (280)
                      ..+.-.+=.+.
T Consensus       156 V~~TD~iQ~~i  166 (530)
T 3dh4_A          156 VVWTDVIQVFF  166 (530)
T ss_dssp             CCSHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77766554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00