Citrus Sinensis ID: 023607

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
MGNVNAREDGSNSPSGVEEGESNNSVQEEGIIVPDGLMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEEEcccccEEcccccccEEEEEEEcccEEEEEEEEEccEEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccEEEcccccccEEEEEEEEEEEccEEEEEEEEEcccc
cccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEEccccccccccEcccccEEEEEEcccccEEEEEEEcccEEEccccccEEcccccEEEEEEEcccccccHHHHHHccccccccccccccccccHHHcccccccccHHHHHHEccccccccccccccccccEEEEHHHHHccccccEEEEEEEEHHHHcEEEEEEEEccccc
mgnvnaredgsnspsgveegesnnsvqeegiivpdglmgqspphsprathsplmftpqvpvvplqrpdemqipnlswmqtssgyedmgdgvgiptmitwshdgcevavegswdnWKTRIALQrsgkdftimkvlpsgvyQYRFLVDGLwkyapdlpstqdddgnvynildlqeyvpddlesissfeppqspetsynnlqltaedfakepplvpphlqmtllnvpasymeippplsrpqhvvLNHLymqkgksgpsvvalGSTHRFLAKYVTVVLYKSMQR
mgnvnaredgsnspsgveegesnnsVQEEGIIVPDGLMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALqrsgkdftimkVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR
MGNVNAREDGSNSPSGVEEGESNNSVQEEGIIVPDGLMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR
**************************************************************************LSWMQT*SGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVP**************************************HLQMTLLNVPASYMEIP**L*RPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK****
********************************************************************************************IPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPD***************************FAKEPPLVPPHLQMTLL****************QHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQ*
*************************VQEEGIIVPDGLMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR
***********************************************************P*****************************GVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPP*SPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSM**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGNVNAREDGSNSPSGVEEGESNNSVQEEGIIVPDGLMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query280 2.2.26 [Sep-21-2011]
Q9SCY5289 SNF1-related protein kina yes no 1.0 0.968 0.716 1e-116
Q84VQ1283 SNF1-related protein kina no no 0.796 0.787 0.513 5e-60
O43741272 5'-AMP-activated protein yes no 0.785 0.808 0.338 5e-28
Q9QZH4271 5'-AMP-activated protein yes no 0.667 0.690 0.358 6e-28
Q6PAM0271 5'-AMP-activated protein yes no 0.667 0.690 0.358 1e-27
Q9R078270 5'-AMP-activated protein no no 0.707 0.733 0.344 1e-23
P80386270 5'-AMP-activated protein no no 0.732 0.759 0.336 1e-23
Q5R801270 5'-AMP-activated protein yes no 0.707 0.733 0.339 1e-23
Q5BIS9270 5'-AMP-activated protein no no 0.707 0.733 0.339 1e-23
Q9Y478270 5'-AMP-activated protein no no 0.707 0.733 0.339 2e-23
>sp|Q9SCY5|KINB2_ARATH SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1 Back     alignment and function desciption
 Score =  418 bits (1074), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/289 (71%), Positives = 239/289 (82%), Gaps = 9/289 (3%)

Query: 1   MGNVNAREDG-SNSPSGVEEGESNNSVQEEGIIVPDG-------LMGQSPPHSPRATHSP 52
           MGNVNARE+  SN+ S VE+ ++    +E      DG       LMGQSPPHSPRAT SP
Sbjct: 1   MGNVNAREEANSNNASAVEDEDAEICSREAMSAASDGNHVAPPELMGQSPPHSPRATQSP 60

Query: 53  LMFTPQVPVVPLQRPDEMQIPNLSWMQT-SSGYEDMGDGVGIPTMITWSHDGCEVAVEGS 111
           LMF PQVPV+PLQRPDE+ IPN SWMQ+ SS YE+  +  GIPTMITW H G E+AVEGS
Sbjct: 61  LMFAPQVPVLPLQRPDEIHIPNPSWMQSPSSLYEEASNEQGIPTMITWCHGGKEIAVEGS 120

Query: 112 WDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDL 171
           WDNWKTR  LQRSGKDFTIMKVLPSGVY+YRF+VDG W++AP+LP  +DD GN +NILDL
Sbjct: 121 WDNWKTRSRLQRSGKDFTIMKVLPSGVYEYRFIVDGQWRHAPELPLARDDAGNTFNILDL 180

Query: 172 QEYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIP 231
           Q+YVP+D++SIS FEPPQSPE SY+NL L AED++KEPP+VPPHLQMTLLN+PA+  +IP
Sbjct: 181 QDYVPEDIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIP 240

Query: 232 PPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR 280
            PL RPQHV+LNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKS+QR
Sbjct: 241 SPLPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 289
Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. The SnRK complex may also be involved in the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase and in assimilation of nitrogen by phosphorylating nitrate reductase.
Arabidopsis thaliana (taxid: 3702)
>sp|Q84VQ1|KINB1_ARATH SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1 Back     alignment and function description
>sp|O43741|AAKB2_HUMAN 5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1 Back     alignment and function description
>sp|Q9QZH4|AAKB2_RAT 5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus GN=Prkab2 PE=1 SV=1 Back     alignment and function description
>sp|Q6PAM0|AAKB2_MOUSE 5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus GN=Prkab2 PE=1 SV=1 Back     alignment and function description
>sp|Q9R078|AAKB1_MOUSE 5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus GN=Prkab1 PE=1 SV=2 Back     alignment and function description
>sp|P80386|AAKB1_RAT 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus GN=Prkab1 PE=1 SV=4 Back     alignment and function description
>sp|Q5R801|AAKB1_PONAB 5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii GN=PRKAB1 PE=2 SV=3 Back     alignment and function description
>sp|Q5BIS9|AAKB1_BOVIN 5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus GN=PRKAB1 PE=2 SV=3 Back     alignment and function description
>sp|Q9Y478|AAKB1_HUMAN 5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens GN=PRKAB1 PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query280
255563760307 snf1-kinase beta subunit, plants, putati 1.0 0.912 0.710 1e-119
224086343293 predicted protein [Populus trichocarpa] 1.0 0.955 0.726 1e-118
359496111301 PREDICTED: SNF1-related protein kinase r 0.996 0.926 0.715 1e-116
224137216261 predicted protein [Populus trichocarpa] 0.882 0.946 0.809 1e-116
356555761292 PREDICTED: SNF1-related protein kinase r 1.0 0.958 0.708 1e-115
62900625289 RecName: Full=SNF1-related protein kinas 1.0 0.968 0.716 1e-114
297735878263 unnamed protein product [Vitis vinifera] 0.871 0.927 0.819 1e-114
356532768303 PREDICTED: SNF1-related protein kinase r 0.985 0.910 0.671 1e-112
32364488287 AKIN beta2 [Medicago truncatula] 0.992 0.968 0.705 1e-110
297804560258 AMP-activated protein kinase [Arabidopsi 0.889 0.965 0.767 1e-110
>gi|255563760|ref|XP_002522881.1| snf1-kinase beta subunit, plants, putative [Ricinus communis] gi|223537866|gb|EEF39481.1| snf1-kinase beta subunit, plants, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/307 (71%), Positives = 245/307 (79%), Gaps = 27/307 (8%)

Query: 1   MGNVNAR--EDGSNSPSGVEEG--------------ESNNSVQEEGIIVPDG-------- 36
           MGNVN R  EDG N+     +               +       +G++VPDG        
Sbjct: 1   MGNVNGRGEEDGENNIINNNKSPSGSSRGGGIGVVVDEEGGCGTDGVVVPDGSRLAYLPP 60

Query: 37  ---LMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGI 93
              LMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDE+QIP+ SWMQT+ GYED+ D  GI
Sbjct: 61  PPELMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDEIQIPSNSWMQTNVGYEDICDEQGI 120

Query: 94  PTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAP 153
           PTMITWS+ G EVAVEGSWDNWK RI LQRSGKD+TIMKVLPSGVYQYRF++DG W+Y P
Sbjct: 121 PTMITWSYGGKEVAVEGSWDNWKMRIPLQRSGKDYTIMKVLPSGVYQYRFIIDGQWRYIP 180

Query: 154 DLPSTQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVP 213
           DLP  QDD GN YNILDLQEYVP+DLESISSFEPPQSPE+SY+NLQL  ++FAKEPP VP
Sbjct: 181 DLPWAQDDTGNAYNILDLQEYVPEDLESISSFEPPQSPESSYSNLQLGNDEFAKEPPFVP 240

Query: 214 PHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVV 273
           PHLQMTLLN+P+SYME+P PLSRPQHVVLNHLY+QKGK GP+VVALGSTHRFL+KYVTVV
Sbjct: 241 PHLQMTLLNMPSSYMEMPTPLSRPQHVVLNHLYIQKGKGGPAVVALGSTHRFLSKYVTVV 300

Query: 274 LYKSMQR 280
           LYKS+QR
Sbjct: 301 LYKSLQR 307

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224086343|ref|XP_002307855.1| predicted protein [Populus trichocarpa] gi|222853831|gb|EEE91378.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359496111|ref|XP_002270146.2| PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224137216|ref|XP_002322502.1| predicted protein [Populus trichocarpa] gi|222867132|gb|EEF04263.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356555761|ref|XP_003546198.1| PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Glycine max] Back     alignment and taxonomy information
>gi|62900625|sp|Q9SCY5.1|KINB2_ARATH RecName: Full=SNF1-related protein kinase regulatory subunit beta-2; Short=AKIN subunit beta-2; Short=AKINB2; Short=AKINbeta2 gi|13430672|gb|AAK25958.1|AF360248_1 putative kinase [Arabidopsis thaliana] gi|6686784|emb|CAB64719.1| AKIN beta2 [Arabidopsis thaliana] gi|56744220|gb|AAW28550.1| At4g16360 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297735878|emb|CBI18637.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356532768|ref|XP_003534943.1| PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Glycine max] Back     alignment and taxonomy information
>gi|32364488|gb|AAO61677.1| AKIN beta2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297804560|ref|XP_002870164.1| AMP-activated protein kinase [Arabidopsis lyrata subsp. lyrata] gi|297316000|gb|EFH46423.1| AMP-activated protein kinase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query280
TAIR|locus:2178963320 AKINBETA1 "AT5G21170" [Arabido 0.775 0.678 0.513 6.9e-61
DICTYBASE|DDB_G0281089347 prkab "AMP-activated protein k 0.635 0.512 0.410 1.4e-32
UNIPROTKB|O43741272 PRKAB2 "5'-AMP-activated prote 0.796 0.819 0.346 1.3e-29
UNIPROTKB|E1B986272 PRKAB2 "Uncharacterized protei 0.796 0.819 0.346 1.6e-29
UNIPROTKB|E2R145272 PRKAB2 "Uncharacterized protei 0.796 0.819 0.346 2.1e-29
UNIPROTKB|F1SDB6272 PRKAB2 "Uncharacterized protei 0.796 0.819 0.342 3.4e-29
RGD|620905271 Prkab2 "protein kinase, AMP-ac 0.796 0.822 0.342 3.4e-29
MGI|MGI:1336185271 Prkab2 "protein kinase, AMP-ac 0.796 0.822 0.342 5.6e-29
UNIPROTKB|G3V9X3271 Prkab2 "5'-AMP-activated prote 0.796 0.822 0.342 5.6e-29
ZFIN|ZDB-GENE-040718-377268 prkab1a "protein kinase, AMP-a 0.710 0.742 0.367 3.9e-28
TAIR|locus:2178963 AKINBETA1 "AT5G21170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 575 (207.5 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
 Identities = 114/222 (51%), Positives = 152/222 (68%)

Query:    59 VPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTR 118
             VPV PLQR +     N+ W Q+   +++  +  GIPT+ITW+  G +VAVEGSWDNW++R
Sbjct:   104 VPVAPLQRANAPPPNNIQWNQSQRVFDNPPEQ-GIPTIITWNQGGNDVAVEGSWDNWRSR 162

Query:   119 IALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDD 178
               LQ+SGKD +I+ VLPSG+Y Y+ +VDG  KY PDLP   D+ GNV NILD+  +VP++
Sbjct:   163 KKLQKSGKDHSILFVLPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDVHNFVPEN 222

Query:   179 LESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQ 238
              ESI  FE P SP+ SY      AED+AKEP  VPP L +TLL       E     ++PQ
Sbjct:   223 PESIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLLGTT----EETAIATKPQ 278

Query:   239 HVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR 280
             HVVLNH+++++G +  S+VALG THRF +KY+TVVLYK + R
Sbjct:   279 HVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 320
GO:0004679 "AMP-activated protein kinase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0005515 "protein binding" evidence=IPI
GO:0043562 "cellular response to nitrogen levels" evidence=IEP
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
DICTYBASE|DDB_G0281089 prkab "AMP-activated protein kinase beta subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|O43741 PRKAB2 "5'-AMP-activated protein kinase subunit beta-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1B986 PRKAB2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R145 PRKAB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SDB6 PRKAB2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|620905 Prkab2 "protein kinase, AMP-activated, beta 2 non-catalytic subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1336185 Prkab2 "protein kinase, AMP-activated, beta 2 non-catalytic subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G3V9X3 Prkab2 "5'-AMP-activated protein kinase subunit beta-2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-377 prkab1a "protein kinase, AMP-activated, beta 1 non-catalytic subunit, a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SCY5KINB2_ARATHNo assigned EC number0.71621.00.9688yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
pfam0473994 pfam04739, AMPKBI, 5'-AMP-activated protein kinase 6e-34
cd0285980 cd02859, E_set_AMPKbeta_like_N, N-terminal Early s 1e-26
smart01010100 smart01010, AMPKBI, 5'-AMP-activated protein kinas 3e-23
cd1129483 cd11294, E_set_Esterase_like_N, N-terminal Early s 3e-05
cd0718486 cd07184, E_set_Isoamylase_like_N, N-terminal Early 2e-04
>gnl|CDD|218238 pfam04739, AMPKBI, 5'-AMP-activated protein kinase beta subunit, interation domain Back     alignment and domain information 
 Score =  118 bits (298), Expect = 6e-34
 Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 9/96 (9%)

Query: 190 SPETSYNNL-------QLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVL 242
           SP +SY+N            E+FAKEPP +PPHL  T+LN P +  + P  L  P HVVL
Sbjct: 1   SPPSSYSNEIPANFQDLDFEEEFAKEPPSLPPHLLKTILNKPTASTDDPSLLPIPNHVVL 60

Query: 243 NHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSM 278
           NHLY    K    V+ALG+T R+ +KYVT VLYK +
Sbjct: 61  NHLYTSSIK--NGVLALGATTRYKSKYVTTVLYKPL 94

This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain (pfam02922) is sometimes found in proteins belonging to this family. Length = 94
>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit Back     alignment and domain information
>gnl|CDD|214973 smart01010, AMPKBI, 5'-AMP-activated protein kinase beta subunit, interation domain Back     alignment and domain information
>gnl|CDD|199894 cd11294, E_set_Esterase_like_N, N-terminal Early set domain associated with the catalytic domain of putative esterases Back     alignment and domain information
>gnl|CDD|199892 cd07184, E_set_Isoamylase_like_N, N-terminal Early set domain associated with the catalytic domain of isoamylase-like (also called glycogen 6-glucanohydrolase) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 280
KOG1616289 consensus Protein involved in Snf1 protein kinase 100.0
PF04739100 AMPKBI: 5'-AMP-activated protein kinase beta subun 100.0
cd0285979 AMPKbeta_GBD_like AMP-activated protein kinase (AM 99.93
cd0286182 E_set_proteins_like E or "early" set-like proteins 99.76
cd0285885 Esterase_N_term Esterase N-terminal domain. Estera 99.14
cd0268883 E_set E or "early" set of sugar utilizing enzymes 98.69
PF0292285 CBM_48: Carbohydrate-binding module 48 (Isoamylase 98.35
cd0285499 Glycogen_branching_enzyme_like_N_term Glycogen bra 98.33
PF0068696 CBM_20: Starch binding domain; InterPro: IPR002044 97.55
cd0580895 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM2 97.38
cd0581892 CBM20_water_dikinase Phosphoglucan water dikinase 97.32
cd02860100 Pullulanase_N_term Pullulanase domain N-terminus. 97.27
cd02855106 Glycogen_branching_enzyme_N_term Glycogen branchin 97.25
cd05814120 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate- 97.2
COG0296 628 GlgB 1,4-alpha-glucan branching enzyme [Carbohydra 97.06
cd05820103 CBM20_novamyl Novamyl (also known as acarviose tra 97.0
cd0580999 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 96.95
PRK12568 730 glycogen branching enzyme; Provisional 96.88
PRK12313 633 glycogen branching enzyme; Provisional 96.86
cd02856103 Glycogen_debranching_enzyme_N_term Glycogen_debran 96.74
cd02852119 Isoamylase_N_term Isoamylase N-terminus domain. Is 96.68
cd0581395 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 96.66
PRK14705 1224 glycogen branching enzyme; Provisional 96.65
cd05811106 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-g 96.61
PLN02447 758 1,4-alpha-glucan-branching enzyme 96.6
PRK14706 639 glycogen branching enzyme; Provisional 96.48
cd05807101 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrat 96.41
cd0581097 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrol 96.33
PRK05402 726 glycogen branching enzyme; Provisional 96.19
cd0546796 CBM20 The family 20 carbohydrate-binding module (C 96.07
cd0581699 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DP 95.99
cd05817100 CBM20_DSP Dual-specificity phosphatase (DSP), N-te 95.97
cd0285385 MTHase_N_term Maltooligosyl trehalose synthase (MT 95.45
TIGR01515 613 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 95.42
TIGR02402 542 trehalose_TreZ malto-oligosyltrehalose trehalohydr 95.31
PRK05402 726 glycogen branching enzyme; Provisional 95.02
PF0342387 CBM_25: Carbohydrate binding domain (family 25); I 94.96
cd05806112 CBM20_laforin Laforin protein tyrosine phosphatase 94.37
cd05815101 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DP 94.23
TIGR02104 605 pulA_typeI pullulanase, type I. Pullulan is an unu 93.1
PF11806122 DUF3327: Domain of unknown function (DUF3327); Int 91.71
PLN02960 897 alpha-amylase 91.46
PLN02950 909 4-alpha-glucanotransferase 90.6
PLN02950 909 4-alpha-glucanotransferase 89.11
PRK10439 411 enterobactin/ferric enterobactin esterase; Provisi 88.93
TIGR02100 688 glgX_debranch glycogen debranching enzyme GlgX. Th 86.84
PF0135782 Pollen_allerg_1: Pollen allergen; InterPro: IPR007 86.62
PLN02316 1036 synthase/transferase 86.59
TIGR02102 1111 pullulan_Gpos pullulanase, extracellular, Gram-pos 85.64
PLN02316 1036 synthase/transferase 85.16
cd02857116 CD_pullulan_degrading_enzymes_N_term CD and pullul 84.6
PRK03705 658 glycogen debranching enzyme; Provisional 81.77
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.6e-52  Score=388.49  Aligned_cols=240  Identities=40%  Similarity=0.650  Sum_probs=211.7

Q ss_pred             CCCCCCCCCCCCCCCccCCCCcccCCCCCCCCCCCccccccccC-CCCCCCCCcceeEEEEecCCCceEEEEecCCCCcc
Q 023607           39 GQSPPHSPRATHSPLMFTPQVPVVPLQRPDEMQIPNLSWMQTSS-GYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKT  117 (280)
Q Consensus        39 ~~~~p~~~~~~~~p~~f~~q~p~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vpv~f~W~~gg~~V~V~GSFnnW~~  117 (280)
                      +...+...+.-....+|.|+.+..+..++.+.......|.+... .+........+||+|+|.++++.|||+|+|+||+.
T Consensus        25 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~pvvi~W~~gg~~v~v~gS~~nWk~  104 (289)
T KOG1616|consen   25 GSHKPGSERKIPSNSGFSPDDPDPPSTRDEKERIDEGSWSQSQTGEDNEKDREQGRPTVIRWSQGGKEVYVDGSFGNWKT  104 (289)
T ss_pred             CCCCCCCccccccccccCCcCCCCCcCcccccccccccccccccccccccccccCCceEEEecCCCceEEEecccccccc
Confidence            33333344443334488999999999998888888888887764 46666668899999999999999999999999999


Q ss_pred             ceeeeecCCc---EEEEEEcCCceEEEEEEEcCeeccCCCCCceeCCCCceeceEecccCC--CCccccccCC-------
Q 023607          118 RIALQRSGKD---FTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYV--PDDLESISSF-------  185 (280)
Q Consensus       118 ~i~L~ks~~~---f~~~l~Lp~G~y~YKFiVDG~W~~dp~~P~~~D~~G~~nNvI~V~~~~--pe~~~s~~~~-------  185 (280)
                      +++|.++++.   |+++++|++|.|+|||+|||+|++|+++|++.|..|++||+|+|.+.+  .+.++.+.++       
T Consensus       105 ~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~~N~i~v~~~~~v~~~~~~l~~~~~~~~~~  184 (289)
T KOG1616|consen  105 KIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNLNNILEVQDPDEVFEVFQALEEDLPSSNHS  184 (289)
T ss_pred             cccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCCcccceEecCccccchhhhhhhhhccccccc
Confidence            9999998776   999999999999999999999999999999999999999999999988  8877777665       


Q ss_pred             ---CCCCCC-------CCCCccccCCccccCCC--CCCCChhhhhhccCCCCCCCCCCCCCCCCCeeeecceEeecccCC
Q 023607          186 ---EPPQSP-------ETSYNNLQLTAEDFAKE--PPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSG  253 (280)
Q Consensus       186 ---~~p~sp-------~~sY~~~~p~~~~~~k~--PP~LPphL~~~iLN~~~~~~~d~~~Lp~P~HVvLNHLy~~sik~~  253 (280)
                         +.+..+       .++|+|+.|..+++.+.  ||.|||||.++|||+.+..+|++..|++|+||+|||||+++|  +
T Consensus       185 ~s~e~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~p~lpp~l~~v~lnk~~~~~~~~~~~~~p~hv~lnhl~~~si--k  262 (289)
T KOG1616|consen  185 ESSEVPNLPEELEAKPLGSYTQEKPAVEDEEKAMAPPVLPPHLLQVILNKDTQVSCDPALLPEPNHVALNHLYALSI--K  262 (289)
T ss_pred             cccccCCCccccccccccccccccchhhcchhcccCCCCCcchheeeccccccccccccccCCccchhhhhhhhhcc--C
Confidence               555555       89999999998887766  999999999999999999999999999999999999999998  5


Q ss_pred             CcEEEEeeeeeecceeeEEEEeeecCC
Q 023607          254 PSVVALGSTHRFLAKYVTVVLYKSMQR  280 (280)
Q Consensus       254 ~~vlal~~T~Ryk~KyvTtvlYkp~~~  280 (280)
                      +++++|++||||++||||++||||+++
T Consensus       263 ~~~~~~~~~~r~~~k~vt~~lyk~~~~  289 (289)
T KOG1616|consen  263 DGVMVLSFTHRYKKKYVTTGLYKPLQL  289 (289)
T ss_pred             CCeeEecceecccccceeEEeeeeccC
Confidence            799999999999999999999999975

>PF04739 AMPKBI: 5'-AMP-activated protein kinase beta subunit, interation domain; InterPro: IPR006828 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD) Back     alignment and domain information
>cd02861 E_set_proteins_like E or "early" set-like proteins Back     alignment and domain information
>cd02858 Esterase_N_term Esterase N-terminal domain Back     alignment and domain information
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies Back     alignment and domain information
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain Back     alignment and domain information
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus Back     alignment and domain information
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain Back     alignment and domain information
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>PRK12568 glycogen branching enzyme; Provisional Back     alignment and domain information
>PRK12313 glycogen branching enzyme; Provisional Back     alignment and domain information
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain Back     alignment and domain information
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain Back     alignment and domain information
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>PRK14705 glycogen branching enzyme; Provisional Back     alignment and domain information
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>PLN02447 1,4-alpha-glucan-branching enzyme Back     alignment and domain information
>PRK14706 glycogen branching enzyme; Provisional Back     alignment and domain information
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>PRK05402 glycogen branching enzyme; Provisional Back     alignment and domain information
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase) Back     alignment and domain information
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2 Back     alignment and domain information
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain Back     alignment and domain information
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase Back     alignment and domain information
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase Back     alignment and domain information
>PRK05402 glycogen branching enzyme; Provisional Back     alignment and domain information
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity Back     alignment and domain information
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1 Back     alignment and domain information
>TIGR02104 pulA_typeI pullulanase, type I Back     alignment and domain information
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase Back     alignment and domain information
>PLN02960 alpha-amylase Back     alignment and domain information
>PLN02950 4-alpha-glucanotransferase Back     alignment and domain information
>PLN02950 4-alpha-glucanotransferase Back     alignment and domain information
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional Back     alignment and domain information
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX Back     alignment and domain information
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants [] Back     alignment and domain information
>PLN02316 synthase/transferase Back     alignment and domain information
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive Back     alignment and domain information
>PLN02316 synthase/transferase Back     alignment and domain information
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain Back     alignment and domain information
>PRK03705 glycogen debranching enzyme; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
2f15_A96 Glycogen-Binding Domain Of The Amp-Activated Protei 6e-13
1z0m_A96 The Glycogen-Binding Domain Of The Amp-Activated Pr 2e-10
4eai_B85 Co-Crystal Structure Of An Ampk Core With Amp Lengt 8e-10
2v8q_B87 Crystal Structure Of The Regulatory Fragment Of Mam 9e-10
1z0n_A96 The Glycogen-Binding Domain Of The Amp-Activated Pr 1e-09
4eag_B85 Co-Crystal Structure Of An Chimeric Ampk Core With 1e-09
4eak_B72 Co-Crystal Structure Of An Ampk Core With Atp Lengt 2e-09
2qlv_B252 Crystal Structure Of The Heterotrimer Core Of The S 2e-08
2oox_B97 Crystal Structure Of The Adenylate Sensor From Amp- 2e-04
>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta2 Subunit Length = 96 Back     alignment and structure 
Iteration: 1

 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 94  PTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAP 153
           PT+I WS  G EV + GS++NW T+I L +S  DF  +  LP G +QY+F VDG W + P
Sbjct: 11  PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDP 70
Query: 154 DLPSTQDDDGNVYNILDLQE 173
             P      G + N++ +++
Sbjct: 71  SEPVVTSQLGTINNLIHVKK 90
>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta1 Subunit Length = 96 Back     alignment and structure
>pdb|4EAI|B Chain B, Co-Crystal Structure Of An Ampk Core With Amp Length = 85 Back     alignment and structure
>pdb|2V8Q|B Chain B, Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Amp Length = 87 Back     alignment and structure
>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Length = 96 Back     alignment and structure
>pdb|4EAG|B Chain B, Co-Crystal Structure Of An Chimeric Ampk Core With Atp Length = 85 Back     alignment and structure
>pdb|4EAK|B Chain B, Co-Crystal Structure Of An Ampk Core With Atp Length = 72 Back     alignment and structure
>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 252 Back     alignment and structure
>pdb|2OOX|B Chain B, Crystal Structure Of The Adenylate Sensor From Amp-activated Protein Kinase Complexed With Amp Length = 97 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
2qlv_B252 Protein SIP2, protein SPM2; heterotrimer, ATP-bind 8e-40
3t4n_B113 SNF1 protein kinase subunit beta-2; CBS domain, nu 3e-36
2v8q_B87 5'-AMP-activated protein kinase subunit beta-2; ph 2e-30
2qrd_B97 SPCC1919.03C protein; AMPK, ADP, ATP-binding, kina 3e-27
1z0n_A96 5'-AMP-activated protein kinase, beta-1 subunit; b 4e-25
3nme_A294 Ptpkis1 protein, SEX4 glucan phosphatase; dual spe 3e-20
4aee_A 696 Alpha amylase, catalytic region; hydrolase, hypert 1e-06
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252 Back     alignment and structure
 Score =  138 bits (347), Expect = 8e-40
 Identities = 53/251 (21%), Positives = 87/251 (34%), Gaps = 67/251 (26%)

Query: 93  IPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGK---DFTIMKVLPSGVYQYRFLVDGLW 149
           +P  I W   G +V V GS+  W+  I L         F +   L  G +++RF+VD   
Sbjct: 4   VPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNEL 63

Query: 150 KYAPDLPSTQDDDGNVYNILDLQEYVPDDL------------------ESISSFEPPQSP 191
           + +  LP+  D  GN  N +++++   +                     S  + +  + P
Sbjct: 64  RVSDFLPTATDQMGNFVNYIEVRQPEKNPTNEKIRSKEADSMRPPTSDRSSIALQIGKDP 123

Query: 192 ETSYNNLQLTAEDFAKEP---------------------------------------PLV 212
           +   +      ED +  P                                       P +
Sbjct: 124 DDFGDGYTRFHEDLSPRPPLEYTTDIPAVFTDPSVMERYYYTLDRQQSNTDTSWLTPPQL 183

Query: 213 PPHLQMTLLNVPASYMEI-----PPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLA 267
           PP L+  +LN   +  +         L  P HVVLNHL     K     + + S  R+  
Sbjct: 184 PPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSSIKHN--TLCVASIVRYKQ 241

Query: 268 KYVTVVLYKSM 278
           KYVT +LY  +
Sbjct: 242 KYVTQILYTPI 252
>3t4n_B SNF1 protein kinase subunit beta-2; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_B* 3te5_B* Length = 113 Back     alignment and structure
>2v8q_B 5'-AMP-activated protein kinase subunit beta-2; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Homo sapiens} SCOP: d.353.1.1 PDB: 2v92_B* 2v9j_B* 2y8l_B* 2y8q_B* 2y94_B* 2ya3_B* Length = 87 Back     alignment and structure
>2qrd_B SPCC1919.03C protein; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.353.1.1 PDB: 2ooy_B* 2qr1_B* 2qrc_B* 2oox_B* 2qre_B* Length = 97 Back     alignment and structure
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Length = 96 Back     alignment and structure
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294 Back     alignment and structure
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query280
2qlv_B252 Protein SIP2, protein SPM2; heterotrimer, ATP-bind 100.0
2v8q_B87 5'-AMP-activated protein kinase subunit beta-2; ph 100.0
2qrd_B97 SPCC1919.03C protein; AMPK, ADP, ATP-binding, kina 100.0
3t4n_B113 SNF1 protein kinase subunit beta-2; CBS domain, nu 99.97
1z0n_A96 5'-AMP-activated protein kinase, beta-1 subunit; b 99.93
3nme_A294 Ptpkis1 protein, SEX4 glucan phosphatase; dual spe 99.88
4aee_A 696 Alpha amylase, catalytic region; hydrolase, hypert 99.56
4aef_A 645 Neopullulanase (alpha-amylase II); hydrolase, ther 99.19
2z0b_A131 GDE5, KIAA1434, putative glycerophosphodiester pho 98.27
3c8d_A 403 Enterochelin esterase; alpha-beta-alpha sandwich, 97.81
1ac0_A108 Glucoamylase; hydrolase, starch binding domain; HE 97.8
1m7x_A 617 1,4-alpha-glucan branching enzyme; alpha/beta barr 97.18
3aml_A 755 OS06G0726400 protein; starch-branching, transferas 97.06
3k1d_A 722 1,4-alpha-glucan-branching enzyme; mycobacterium t 97.0
2laa_A104 Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa 96.45
1wzl_A 585 Alpha-amylase II; pullulan, GH-13, alpha-amylase f 95.57
2vn4_A599 Glucoamylase; hydrolase, carbohydrate binding, gly 95.54
1bf2_A 750 Isoamylase; hydrolase, glycosidase, debranching en 95.48
3vgf_A 558 Malto-oligosyltrehalose trehalohydrolase; alpha/be 95.38
3bmv_A683 Cyclomaltodextrin glucanotransferase; glycosidase, 95.28
1qho_A686 Alpha-amylase; glycoside hydrolase, starch degrada 95.27
2bhu_A 602 Maltooligosyltrehalose trehalohydrolase; alpha-amy 95.24
1j0h_A 588 Neopullulanase; beta-alpha-barrels, hydrolase; 1.9 95.05
2wsk_A 657 Glycogen debranching enzyme; carbohydrate metaboli 94.95
2vr5_A 718 Glycogen operon protein GLGX; hydrolase, glycosida 94.87
1cyg_A680 Cyclodextrin glucanotransferase; glycosyltransfera 94.72
1d3c_A686 Cyclodextrin glycosyltransferase; alpha-amylase, p 94.69
1vem_A516 Beta-amylase; beta-alpha-barrels, optimum PH, hydr 94.52
1ea9_C 583 Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A 93.56
2e8y_A 718 AMYX protein, pullulanase; multiple domain, beta-a 93.41
4aio_A 884 Limit dextrinase; hydrolase, pullulanase, glycosid 92.41
2fhf_A 1083 Pullulanase; multiple domain, beta-alpha-barrel, a 92.25
3m07_A 618 Putative alpha amylase; IDP00968, csgid, structura 92.24
1gcy_A527 Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b 91.4
3faw_A 877 Reticulocyte binding protein; TIM barrel, beta bar 91.19
2ya0_A 714 Putative alkaline amylopullulanase; hydrolase, gly 90.8
1ji1_A 637 Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6 90.5
2wan_A 921 Pullulanase; hydrolase, glycoside hydrolase, polys 90.32
2wan_A 921 Pullulanase; hydrolase, glycoside hydrolase, polys 90.0
2ya1_A 1014 Putative alkaline amylopullulanase; hydrolase, gly 84.53
2c3v_A102 Alpha-amylase G-6; carbohydrate-binding module, st 80.82
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Back     alignment and structure
Probab=100.00  E-value=6.1e-62  Score=445.19  Aligned_cols=186  Identities=28%  Similarity=0.492  Sum_probs=129.1

Q ss_pred             cceeEEEEecCCCceEEEEecCCCCccceeeeec---CCcEEEEEEcCCceEEEEEEEcCeeccCCCCCceeCCCCceec
Q 023607           91 VGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRS---GKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYN  167 (280)
Q Consensus        91 ~~vpv~f~W~~gg~~V~V~GSFnnW~~~i~L~ks---~~~f~~~l~Lp~G~y~YKFiVDG~W~~dp~~P~~~D~~G~~nN  167 (280)
                      .++||+|+|.++|++|+|+|+|++|+.+++|+|+   ++.|++++.|++|+|+|||+|||+|++|+++|++.|+.|++||
T Consensus         2 ~~vpv~f~W~~~a~~V~V~GsF~~W~~~~~m~k~~~~~G~f~~tv~LppG~y~YKFiVDG~w~~Dp~~p~~~d~~G~~nN   81 (252)
T 2qlv_B            2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVN   81 (252)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEE
T ss_pred             CcEEEEEEEeCCCcEEEEEEEeCCCcCcccceeccCCCCcEEEEEECCCCEEEEEEEECCEEEeCCCCCEEecCCCcCcc
Confidence            4689999999999999999999999988999984   2579999999999999999999999999999999999999999


Q ss_pred             eEecccCCCCc------------------cc----------------cccCC--CCCCCCCCCCccccCCc-------cc
Q 023607          168 ILDLQEYVPDD------------------LE----------------SISSF--EPPQSPETSYNNLQLTA-------ED  204 (280)
Q Consensus       168 vI~V~~~~pe~------------------~~----------------s~~~~--~~p~sp~~sY~~~~p~~-------~~  204 (280)
                      +|+|.+.++..                  ..                +.+++  +++.+|.++|+|++|..       |+
T Consensus        82 vi~V~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~y~~eiP~~~~~~~~~e~  161 (252)
T 2qlv_B           82 YIEVRQPEKNPTNEKIRSKEADSMRPPTSDRSSIALQIGKDPDDFGDGYTRFHEDLSPRPPLEYTTDIPAVFTDPSVMER  161 (252)
T ss_dssp             EEEECC----------------------------------------------------------CCCCCGGGTCHHHHHH
T ss_pred             eeeccCccccccccccccccccccccccccccccccccccCccccccccccccccCCCCCcccccccCCchhcccchhhh
Confidence            99998742111                  01                11122  46788999999999963       22


Q ss_pred             c--------------CCCCCCCChhhhhhccCCCCCC-----CCCCCCCCCCCeeeecceEeecccCCCcEEEEeeeeee
Q 023607          205 F--------------AKEPPLVPPHLQMTLLNVPASY-----MEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRF  265 (280)
Q Consensus       205 ~--------------~k~PP~LPphL~~~iLN~~~~~-----~~d~~~Lp~P~HVvLNHLy~~sik~~~~vlal~~T~Ry  265 (280)
                      |              .++||.|||||+++|||+++..     .|++++||+|||||||||||+|||  ++|||||+||||
T Consensus       162 ~~~~~d~~~~~~~~~~~~PP~LPphL~~~iLN~~~~~~~~~~~~~~~~Lp~PnHVvLNHL~~~sIk--~~vlal~~T~RY  239 (252)
T 2qlv_B          162 YYYTLDRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSSIK--HNTLCVASIVRY  239 (252)
T ss_dssp             HHHHHCC-----------CCCCCCC----------------------------CCSCCBCEECCCC--SSEEEEEEEEEE
T ss_pred             hhhcccccccccccccCCCCCCChhhcchhcCCCCccccccccCCcccCCCCCEEEeeeEEEeccc--CCEEEEeeeeee
Confidence            2              4899999999999999998765     478999999999999999999995  799999999999


Q ss_pred             cceeeEEEEeeec
Q 023607          266 LAKYVTVVLYKSM  278 (280)
Q Consensus       266 k~KyvTtvlYkp~  278 (280)
                      |+|||||||||||
T Consensus       240 k~KyVTtvlYkP~  252 (252)
T 2qlv_B          240 KQKYVTQILYTPI  252 (252)
T ss_dssp             TTEEEEEEEEEEC
T ss_pred             cceeEEEEEEeeC
Confidence            9999999999997
>2v8q_B 5'-AMP-activated protein kinase subunit beta-2; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Homo sapiens} SCOP: d.353.1.1 PDB: 2v92_B* 2v9j_B* 2y8l_B* 2y8q_B* 2y94_B* 2ya3_B* Back     alignment and structure
>2qrd_B SPCC1919.03C protein; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.353.1.1 PDB: 2ooy_B* 2qr1_B* 2qrc_B* 2oox_B* 2qre_B* Back     alignment and structure
>3t4n_B SNF1 protein kinase subunit beta-2; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_B* 3te5_B* Back     alignment and structure
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Back     alignment and structure
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Back     alignment and structure
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Back     alignment and structure
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus} Back     alignment and structure
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens} Back     alignment and structure
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* Back     alignment and structure
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A Back     alignment and structure
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* Back     alignment and structure
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Back     alignment and structure
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} Back     alignment and structure
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A Back     alignment and structure
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A Back     alignment and structure
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A* Back     alignment and structure
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Back     alignment and structure
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A Back     alignment and structure
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A Back     alignment and structure
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* Back     alignment and structure
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* Back     alignment and structure
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* Back     alignment and structure
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12} Back     alignment and structure
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A Back     alignment and structure
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 Back     alignment and structure
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... Back     alignment and structure
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A Back     alignment and structure
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Back     alignment and structure
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A* Back     alignment and structure
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A Back     alignment and structure
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A* Back     alignment and structure
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} Back     alignment and structure
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* Back     alignment and structure
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* Back     alignment and structure
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A* Back     alignment and structure
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A Back     alignment and structure
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus} Back     alignment and structure
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus} Back     alignment and structure
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae} Back     alignment and structure
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 280
d2v8qb183 d.353.1.1 (B:190-272) 5'-AMP-activated protein kin 2e-32
d2qrdb193 d.353.1.1 (B:205-297) AMP-activated protein kinase 2e-30
d2qlvb2107 d.353.1.1 (B:306-412) SIP2 {Saccharomyces cerevisi 3e-26
d1z0na187 b.1.18.21 (A:77-163) 5'-AMP-activated protein kina 4e-24
d2qlvb187 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisi 9e-19
>d2v8qb1 d.353.1.1 (B:190-272) 5'-AMP-activated protein kinase subunit beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: AMPKBI-like
superfamily: AMPKBI-like
family: AMPKBI-like
domain: 5'-AMP-activated protein kinase subunit beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (282), Expect = 2e-32
 Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 202 AEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGS 261
           +E+  K PP++PPHL   +LN   +    P  L  P HV+LNHLY    K    V+ L +
Sbjct: 9   SEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKDS--VMVLSA 66

Query: 262 THRFLAKYVTVVLYKSM 278
           THR+  KYVT +LYK +
Sbjct: 67  THRYKKKYVTTLLYKPI 83
>d2qrdb1 d.353.1.1 (B:205-297) AMP-activated protein kinase beta subunit {Schizosaccharomyces pombe [TaxId: 4896]} Length = 93 Back     information, alignment and structure
>d2qlvb2 d.353.1.1 (B:306-412) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 107 Back     information, alignment and structure
>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Length = 87 Back     information, alignment and structure
>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 87 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query280
d2qrdb193 AMP-activated protein kinase beta subunit {Schizos 100.0
d2v8qb183 5'-AMP-activated protein kinase subunit beta-2 {Hu 100.0
d2qlvb2107 SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} 99.97
d1z0na187 5'-AMP-activated protein kinase subunit beta-1 {Ra 99.95
d2qlvb187 SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} 99.95
d2bhua197 Glycosyltrehalose trehalohydrolase, N-terminal dom 98.27
d1m7xa1110 1,4-alpha-glucan branching enzyme, N-terminal doma 98.15
d1kula_108 Glucoamylase, granular starch-binding domain {Aspe 97.63
d3bmva2105 Cyclodextrin glycosyltransferase, C-terminal domai 97.54
d1qhoa2110 Cyclodextrin glycosyltransferase, C-terminal domai 97.46
d1cyga2106 Cyclodextrin glycosyltransferase, C-terminal domai 97.35
d1vema199 beta-amylase {Bacillus cereus [TaxId: 1396]} 97.17
d1eh9a190 Glycosyltrehalose trehalohydrolase, N-terminal dom 96.87
d2fhfa1115 Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57 94.07
d1bf2a1162 Isoamylase, N-terminal domain N {Pseudomonas amylo 93.88
d3c8da1145 Enterochelin esterase {Shigella flexneri 2a str. 2 88.08
d1od3a_132 Putative xylanase {Clostridium stercorarium [TaxId 80.38
>d2qrdb1 d.353.1.1 (B:205-297) AMP-activated protein kinase beta subunit {Schizosaccharomyces pombe [TaxId: 4896]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: AMPKBI-like
superfamily: AMPKBI-like
family: AMPKBI-like
domain: AMP-activated protein kinase beta subunit
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=100.00  E-value=5.5e-37  Score=238.89  Aligned_cols=85  Identities=35%  Similarity=0.572  Sum_probs=79.9

Q ss_pred             CCCccccCC-------ccccCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCCeeeecceEeecccCCCcEEEEeeeeee
Q 023607          193 TSYNNLQLT-------AEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRF  265 (280)
Q Consensus       193 ~sY~~~~p~-------~~~~~k~PP~LPphL~~~iLN~~~~~~~d~~~Lp~P~HVvLNHLy~~sik~~~~vlal~~T~Ry  265 (280)
                      ++|++++|.       .++..++||.|||||+++|||+++...|+++.||+||||||||||++|||  ++|||||+||||
T Consensus         2 ~~y~~~iP~~~~~~~~~~~~~~~PP~lPphL~~tiLN~~~~~~d~~~~Lp~P~HVvLNHLy~~sik--~~vlalg~T~Ry   79 (93)
T d2qrdb1           2 EQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQ--LGVLALSATTRY   79 (93)
T ss_dssp             CCCBSSCCGGGSCC--CCSCCCCCCBCCGGGSCCGGGCCTTHHHHTTBCCCCCGGGTTBCEEECCS--SSSEEEEEEEEE
T ss_pred             cchhhhcChhhccccchhhccCCCCCCChHHceeccCCCCCCCCCcccCCCCCEEEeeheeecccc--CceEEEEeEEEe
Confidence            579999986       56788999999999999999999998899999999999999999999995  799999999999


Q ss_pred             cceeeEEEEeeecC
Q 023607          266 LAKYVTVVLYKSMQ  279 (280)
Q Consensus       266 k~KyvTtvlYkp~~  279 (280)
                      |+||||+|||||+|
T Consensus        80 ~~KyVT~VlYkPlq   93 (93)
T d2qrdb1          80 HRKYVTTAMFKNFD   93 (93)
T ss_dssp             TTEEEEEEEEECCC
T ss_pred             cceeEEEEEeccCC
Confidence            99999999999986
>d2v8qb1 d.353.1.1 (B:190-272) 5'-AMP-activated protein kinase subunit beta-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qlvb2 d.353.1.1 (B:306-412) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Back     information, alignment and structure
>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]} Back     information, alignment and structure
>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]} Back     information, alignment and structure
>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} Back     information, alignment and structure
>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} Back     information, alignment and structure
>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]} Back     information, alignment and structure
>d3c8da1 b.1.18.20 (A:6-150) Enterochelin esterase {Shigella flexneri 2a str. 2457T [TaxId: 198215]} Back     information, alignment and structure
>d1od3a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]} Back     information, alignment and structure