Citrus Sinensis ID: 023622

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MLPRWCRAVRSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQPVVSLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRRETKKLCFLGISCSLHWRIHHLVRLEGEAEGGN
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccccHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccccccEEEHHHHcccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEcccEEEEEEEEEcccccc
Coil and Loop (DISEMBL)
MLPRWCRAVRSLNSITQRNDFHAISRQSYAMATAAAasvepaprptkqpvvsldkmfwskpASLAlaldsplrvdepkyeGIKRFILKLMLFYSKqsksirganVIYKRVVsqvdkpaiydVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVafdaallpeakqDELQNVIWRNifsddgsskpddAAVRAVQAMTRYVRRETKKLCFLGISCSLHWRIHHLVRLegeaeggn
Flexible Loop (DISEMBL)
MLPRWCRAVRslnsitqrndFHAISRQSYAMATAAAasvepaprpTKQPVVSLDKMFWSKPASLalaldsplrvdePKYEGIKRFILKLMLFYSKQsksirganviykrvvsqvdkPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNifsddgsskpddAAVRAVQAMTRYVRRETKKLCFLGISCSLHWRIHHLvrlegeaeggn
Low Complexity Region (SEG)
MLPRWCRAVRSLNSITQRNDFHAISRQSYamataaaasvepaprpTKQPVVSLDKMFWSKpaslalaldsplRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRlkeegkegvelgQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRRETKKLCFLGISCSLHWRIHHLVRLEGEAEGGN
Disordered region (IsUnstruct)
****WCRAVRSLNSITQRNDFHAI**************************VSLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFS**********AVRAVQAMTRYVRRETKKLCFLGISCSLHWRIHHLVRL********
Disordered Region (DISOPRED)
*********************************************************************************IKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAG***LLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRRETKKLCFLGISCSLHWRIHHL***********
Disordered Region (DISEMBL)
MLPRWCRAVRSLNSITQRNDFHAISRQSY*******************PVVSLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRRETKKLCFLGISCSLHWRIHHLVRLEGEAEGGN
Disordered Region (DISPRO)
*LPRWCRAVRSLNSITQRNDFHAISRQSYAMATAAA**********KQPVVSLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRRETKKLCFLGISCSLHWRIHHLVRLEGEA****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLPRWCRAVRSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQPVVSLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRRETKKLCFLGISCSLHWRIHHLVRLEGEAEGGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	279	2.2.26 [Sep-21-2011]
Q9W6I0	200	Ubiquinol-cytochrome c re	N/A	no	0.498	0.695	0.270	2e-10
Q9CWU6	295	Ubiquinol-cytochrome c re	yes	no	0.548	0.518	0.294	1e-09
Q9NVA1	299	Ubiquinol-cytochrome c re	no	no	0.637	0.595	0.287	2e-09
Q9USK6	283	CBP3-like protein OS=Schi	yes	no	0.537	0.530	0.242	0.0004

>sp|Q9W6I0|UQCC_XENLA Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog OS=Xenopus laevis GN=uqcc PE=2 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 9/148 (6%)

Query: 106 IYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIY 165
           +Y   V ++D    ++  +L  T    F +  LH+W CL R+K+EG+ G  + +Y+    
Sbjct: 21  MYTCCVERIDYDEFFEKCSLPDTLNSWFLVTQLHVWMCLVRMKQEGRAGKYMCRYIVHSM 80

Query: 166 NHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSD 224
             DVE R    G++ + L   M+ + +IFY  I  +D  ++ + +   L   +WRN+   
Sbjct: 81  WEDVEQRGKVMGIDSVTLKNSMRSMTEIFYAAIFGYDEGIISDDRI--LAAALWRNLL-- 136

Query: 225 DGSSKPDDAAVRAVQAMTRYVRRETKKL 252
             + + DD   R ++ +  YVR++ + L
Sbjct: 137 --NKQCDDP--RKLELLVEYVRKQVQFL 160

Xenopus laevis (taxid: 8355)

>sp|Q9CWU6|UQCC_MOUSE Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog OS=Mus musculus GN=Uqcc PE=2 SV=1

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 10/163 (6%)

Query: 91  LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEE 150
           L YSK    I  A  +Y   V + D    +    +  TF   F + +LH+W CL R+K+E
Sbjct: 102 LKYSKWKIKI-AALRMYTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQE 160

Query: 151 GKEGVELGQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 209
           G+ G  + + +      DVE R    GVN  +L K M  +   FY  I+ +D  +L  + 
Sbjct: 161 GRTGKYMCRIIVHFMWEDVEQRGRVMGVNSYILKKNMALMTNNFYAAILGYDEGIL--SD 218

Query: 210 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRRETKKL 252
              L   +WR  F    + K +D   R ++ +  YVR++ + L
Sbjct: 219 DHGLAAALWRTFF----NQKCEDP--RQLELLVEYVRKQMQYL 255

Mus musculus (taxid: 10090)

>sp|Q9NVA1|UQCC_HUMAN Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog OS=Homo sapiens GN=UQCC PE=1 SV=3

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 17/195 (8%)

Query: 64  LALALDSPLRVDEPKYEGIKRFILKLMLF-----YSKQSKSIRGANVIYKRVVSQVDKPA 118
           L+   DSP  V+E    G    I++ M F     YSK    I  A  +Y   V + D   
Sbjct: 76  LSTTKDSPQPVEEKV--GAFTKIIEAMGFTGPLKYSKWKIKI-AALRMYTSCVEKTDFEE 132

Query: 119 IYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGV 178
            +    +  TF   F + +LH+W CL R+K+EG+ G  + + +      DV+ R    GV
Sbjct: 133 FFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMWEDVQQRGRVMGV 192

Query: 179 N-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRA 237
           N  +L K M  +   FY  I+ +D  +L  +    L   +WR  F    + K +D   R 
Sbjct: 193 NPYILKKNMILMTNHFYAAILGYDEGIL--SDDHGLAAALWRTFF----NRKCEDP--RH 244

Query: 238 VQAMTRYVRRETKKL 252
           ++ +  YVR++ + L
Sbjct: 245 LELLVEYVRKQIQYL 259

Homo sapiens (taxid: 9606)

>sp|Q9USK6|CBP3_SCHPO CBP3-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cbp3 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 11/161 (6%)

Query: 120 YDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGK-EGVELGQYLYEIYNHDVEMRVSK--- 175
           Y    +  TF+  F +  LH+W    R++   K E V   Q L   +  D+E+R+ K   
Sbjct: 127 YQKCEIPMTFQSWFQITQLHLWILHTRIRGLPKNEKVAFSQALTTRFFEDMELRIHKDYR 186

Query: 176 AGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAV 235
              N +   ++K+L +   G I  +D  +L       L   +WRN+F      +PD   V
Sbjct: 187 INSNRISGMYLKDLFQQQTGAIFGYDQGML--GSDAVLATSVWRNLF----VGRPDVDLV 240

Query: 236 RAVQAMTRYVRRETKKLCFLGISCSLHWRIHHLVRLEGEAE 276
             ++ + +++R    +L  L     ++ +  H V  E  A+
Sbjct: 241 -ILETIVKFIRLNVYRLSCLSTDDFINGKGVHFVPPEESAQ 280

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
255641101	255	unknown [Glycine max]	0.881	0.964	0.703	3e-97
30696021	281	ubiquinol-cytochrome C chaperone family	0.899	0.893	0.653	2e-95
255539881	261	conserved hypothetical protein [Ricinus	0.870	0.931	0.676	3e-95
118489171	291	unknown [Populus trichocarpa x Populus d	0.899	0.862	0.686	4e-95
359490078	285	PREDICTED: ubiquinol-cytochrome c reduct	0.899	0.880	0.693	4e-95
110737777	281	hypothetical protein [Arabidopsis thalia	0.899	0.893	0.650	6e-95
297745034	354	unnamed protein product [Vitis vinifera]	0.899	0.709	0.693	8e-95
297795925	281	ubiquinol-cytochrome C chaperone family	0.906	0.900	0.674	1e-94
8843859	391	unnamed protein product [Arabidopsis tha	0.964	0.687	0.557	8e-93
449461829	290	PREDICTED: ubiquinol-cytochrome c reduct	0.910	0.875	0.676	3e-92

>gi|255641101|gb|ACU20829.1| unknown [Glycine max]

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 178/253 (70%), Positives = 207/253 (81%), Gaps = 7/253 (2%)

Query: 1   MLPRWCRAVRSLN---SITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQPVVSLDKMF 57
           ML RW +AV  ++   S +  N    +SRQ+YA   A A ++E  P    +PVV+LDKMF
Sbjct: 1   MLRRWSKAVTPISKFGSQSHLNFVKDVSRQTYA-GVAPAPTIEDKPH---RPVVNLDKMF 56

Query: 58  WSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKP 117
           WSKP SLAL  DSPLRV+EP Y+GIKR +LKLMLFYSKQSKSIRGANV+Y+R++SQVDKP
Sbjct: 57  WSKPCSLALPRDSPLRVEEPDYQGIKRLMLKLMLFYSKQSKSIRGANVVYQRIISQVDKP 116

Query: 118 AIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAG 177
            IY+VFNLEKTF+ TFSLLVLHMWFCLRRLK+EGKEGVE GQYLYEIYNHDVE+RVSKAG
Sbjct: 117 PIYEVFNLEKTFKTTFSLLVLHMWFCLRRLKQEGKEGVEFGQYLYEIYNHDVELRVSKAG 176

Query: 178 VNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRA 237
           VNLLL+KWMKELEKIFYGNIVA+D A+L EAK  +  NVIWRNIFS+DGSS PD AA ++
Sbjct: 177 VNLLLTKWMKELEKIFYGNIVAYDTAILLEAKPGDFSNVIWRNIFSEDGSSTPDAAASQS 236

Query: 238 VQAMTRYVRRETK 250
           VQAM RY R  +K
Sbjct: 237 VQAMARYARPGSK 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696021|ref|NP_199935.2| ubiquinol-cytochrome C chaperone family protein [Arabidopsis thaliana] gi|63025180|gb|AAY27063.1| At5g51220 [Arabidopsis thaliana] gi|87116650|gb|ABD19689.1| At5g51220 [Arabidopsis thaliana] gi|332008671|gb|AED96054.1| ubiquinol-cytochrome C chaperone family protein [Arabidopsis thaliana]

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 172/263 (65%), Positives = 208/263 (79%), Gaps = 12/263 (4%)

Query: 1   MLPRWCRAV------RSLNSITQRNDFHAISRQSYAMATAAAASVEPAPR---PTKQPVV 51
           MLPR  R V      RSL +     +    SR  Y  AT A A+ +P  +   P+K P+ 
Sbjct: 1   MLPRLARVVTQTSKLRSLTTNGSMKNLSFFSR--YGYATVAPAAADPPSQKDFPSKSPI- 57

Query: 52  SLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVV 111
           +LDKMFWSKP SLAL  DSPLR+DEP Y GI+RFILK+M+FYSKQS SIRGANVIYKR++
Sbjct: 58  NLDKMFWSKPCSLALPKDSPLRIDEPDYVGIRRFILKMMMFYSKQSMSIRGANVIYKRII 117

Query: 112 SQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEM 171
           +QVDKPAIYDVFNLEKTF++T+SLLVLHMW  LRRLKE+G+EGV+LGQY+YEIYNHDVE+
Sbjct: 118 AQVDKPAIYDVFNLEKTFKITYSLLVLHMWLVLRRLKEDGQEGVDLGQYVYEIYNHDVEL 177

Query: 172 RVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPD 231
           RVSKAGVNLLL+KWMKELE+IFYGN+VA+DAALLPEAK ++LQ  +WRN+FSDDG++ PD
Sbjct: 178 RVSKAGVNLLLAKWMKELERIFYGNVVAYDAALLPEAKPNDLQIKLWRNVFSDDGTTTPD 237

Query: 232 DAAVRAVQAMTRYVRRETKKLCF 254
           +  ++  QAM RYVRRE   L  
Sbjct: 238 NTDLKTAQAMARYVRRELGSLSL 260

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539881|ref|XP_002511005.1| conserved hypothetical protein [Ricinus communis] gi|223550120|gb|EEF51607.1| conserved hypothetical protein [Ricinus communis]

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 182/269 (67%), Positives = 211/269 (78%), Gaps = 26/269 (9%)

Query: 1   MLPRWCRA-------VRSLNSITQ-RNDFHAISRQSYAMATAAAASVEPAPR-------P 45
           ML RW RA       +RSL + T+ R D   I R +YA A+AA   V PAP        P
Sbjct: 1   MLSRWSRAAASQVSNLRSLTNATKLRKDHLFIPRLTYAKASAAV--VSPAPNDSTHNTFP 58

Query: 46  TKQPVVSLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANV 105
           +  PV  LDKMFWSKP SLALALDSP+RV EP+++GI+RF+LKLMLFYSKQSKSIR ANV
Sbjct: 59  SNSPV-KLDKMFWSKPCSLALALDSPIRVYEPEFQGIRRFMLKLMLFYSKQSKSIRRANV 117

Query: 106 IYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIY 165
           +Y+R++S+V+KP IY+VFNLEKTF+MTFSLLVLHMW  LRRLK+EG+EGVE GQYLYEIY
Sbjct: 118 VYRRIISRVNKPTIYEVFNLEKTFKMTFSLLVLHMWLVLRRLKQEGQEGVEFGQYLYEIY 177

Query: 166 NHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDD 225
           NHDVE+RVSKAGVNLLL+KWMKELEKIFYGNIVA+DAALLPEAK DEL  VIWRN+FSDD
Sbjct: 178 NHDVELRVSKAGVNLLLTKWMKELEKIFYGNIVAYDAALLPEAKSDELVKVIWRNVFSDD 237

Query: 226 GSSKPDDAAVRAVQAMTRYVRRETKKLCF 254
           GSS+PD  A+ AVQA +         LCF
Sbjct: 238 GSSEPDATALHAVQACSH--------LCF 258

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489171|gb|ABK96392.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 182/265 (68%), Positives = 211/265 (79%), Gaps = 14/265 (5%)

Query: 1   MLPRWCRAVRSLNSITQRND-------FHAISRQSYAMATAAAASVEPAPRPTKQ----- 48
           ML R  RA  S      RN+       F  IS QSYA A  AAA    +P  + Q     
Sbjct: 1   MLARCSRAAASHFFHQLRNNNNSKDAAFKFISHQSYAKAATAAAMAA-SPILSSQKVFPS 59

Query: 49  -PVVSLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIY 107
             VV+LDKMF SKP SLALA DSPLR++EP+YEGI+RF+LKL+LFYSKQSKSIRGANV+Y
Sbjct: 60  NSVVNLDKMFRSKPCSLALAPDSPLRIEEPEYEGIRRFVLKLLLFYSKQSKSIRGANVVY 119

Query: 108 KRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNH 167
           +R+VSQVD+PAIY+VFNLEKTF+MTFSLLVLHMW CLRRLK+EG+EGVE GQY+YEIYNH
Sbjct: 120 RRIVSQVDRPAIYEVFNLEKTFKMTFSLLVLHMWLCLRRLKQEGREGVEFGQYIYEIYNH 179

Query: 168 DVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGS 227
           DVE+RVSKAGVNLLL+KWMKELEKI YGNIVA+DAA+LPEAK DEL  VIWRN+FSDDG+
Sbjct: 180 DVELRVSKAGVNLLLTKWMKELEKILYGNIVAYDAAMLPEAKPDELPKVIWRNVFSDDGT 239

Query: 228 SKPDDAAVRAVQAMTRYVRRETKKL 252
           ++PDD A +A+QAM RYVR E   L
Sbjct: 240 TEPDDTASQAIQAMARYVRHEASCL 264

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490078|ref|XP_002264821.2| PREDICTED: ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog [Vitis vinifera]

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 179/258 (69%), Positives = 209/258 (81%), Gaps = 7/258 (2%)

Query: 1   MLPRWCRA------VRSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQPVVSLD 54
           MLPRW RA      + S N++  R DF  ++ +SYA   AAAA        +++P V  +
Sbjct: 1   MLPRWSRAAIRLYKLGSQNNMELRKDFCFVASRSYA-KVAAAADDSTEKNFSRKPEVYFN 59

Query: 55  KMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQV 114
           KMFWSKP SLALA DSPLRV+EPKYEGI+  I K++LFYSKQSKSIRGANV+Y+R+ SQV
Sbjct: 60  KMFWSKPCSLALAQDSPLRVEEPKYEGIRHIIFKMLLFYSKQSKSIRGANVVYRRIASQV 119

Query: 115 DKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVS 174
           DKPAIY+ FNLEKTF+ TFSLL+LHMW CLRRLKE+GKEGVE GQYLYEIYNHDVE+RVS
Sbjct: 120 DKPAIYNAFNLEKTFKTTFSLLILHMWLCLRRLKEDGKEGVEFGQYLYEIYNHDVELRVS 179

Query: 175 KAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAA 234
           KAGVNLLL++WMK+LEKIFYGNIVA+DAA+LPEA+ DEL NVIW+NIFSDDG SKP+DAA
Sbjct: 180 KAGVNLLLTRWMKDLEKIFYGNIVAYDAAMLPEARPDELPNVIWKNIFSDDGLSKPNDAA 239

Query: 235 VRAVQAMTRYVRRETKKL 252
             AVQAM RY RRE   L
Sbjct: 240 AGAVQAMARYARRECSCL 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110737777|dbj|BAF00827.1| hypothetical protein [Arabidopsis thaliana]

 Score =  353 bits (905), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 171/263 (65%), Positives = 207/263 (78%), Gaps = 12/263 (4%)

Query: 1   MLPRWCRAV------RSLNSITQRNDFHAISRQSYAMATAAAASVEPAPR---PTKQPVV 51
           MLPR  R V      RSL +     +    SR  Y  AT A A+ +P  +   P+K P+ 
Sbjct: 1   MLPRLARVVTQTSKLRSLTTNGSMKNLSFFSR--YGYATVAPAAADPPSQKDFPSKSPI- 57

Query: 52  SLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVV 111
           +LDKMFWSKP SL L  DSPLR+DEP Y GI+RFILK+M+FYSKQS SIRGANVIYKR++
Sbjct: 58  NLDKMFWSKPCSLVLPKDSPLRIDEPDYVGIRRFILKMMMFYSKQSMSIRGANVIYKRII 117

Query: 112 SQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEM 171
           +QVDKPAIYDVFNLEKTF++T+SLLVLHMW  LRRLKE+G+EGV+LGQY+YEIYNHDVE+
Sbjct: 118 AQVDKPAIYDVFNLEKTFKITYSLLVLHMWLVLRRLKEDGQEGVDLGQYVYEIYNHDVEL 177

Query: 172 RVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPD 231
           RVSKAGVNLLL+KWMKELE+IFYGN+VA+DAALLPEAK ++LQ  +WRN+FSDDG++ PD
Sbjct: 178 RVSKAGVNLLLAKWMKELERIFYGNVVAYDAALLPEAKPNDLQIKLWRNVFSDDGTTTPD 237

Query: 232 DAAVRAVQAMTRYVRRETKKLCF 254
           +  ++  QAM RYVRRE   L  
Sbjct: 238 NTDLKTAQAMARYVRRELGSLSL 260

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745034|emb|CBI38626.3| unnamed protein product [Vitis vinifera]

 Score =  352 bits (904), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 179/258 (69%), Positives = 209/258 (81%), Gaps = 7/258 (2%)

Query: 1   MLPRWCRA------VRSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQPVVSLD 54
           MLPRW RA      + S N++  R DF  ++ +SYA   AAAA        +++P V  +
Sbjct: 70  MLPRWSRAAIRLYKLGSQNNMELRKDFCFVASRSYA-KVAAAADDSTEKNFSRKPEVYFN 128

Query: 55  KMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQV 114
           KMFWSKP SLALA DSPLRV+EPKYEGI+  I K++LFYSKQSKSIRGANV+Y+R+ SQV
Sbjct: 129 KMFWSKPCSLALAQDSPLRVEEPKYEGIRHIIFKMLLFYSKQSKSIRGANVVYRRIASQV 188

Query: 115 DKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVS 174
           DKPAIY+ FNLEKTF+ TFSLL+LHMW CLRRLKE+GKEGVE GQYLYEIYNHDVE+RVS
Sbjct: 189 DKPAIYNAFNLEKTFKTTFSLLILHMWLCLRRLKEDGKEGVEFGQYLYEIYNHDVELRVS 248

Query: 175 KAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAA 234
           KAGVNLLL++WMK+LEKIFYGNIVA+DAA+LPEA+ DEL NVIW+NIFSDDG SKP+DAA
Sbjct: 249 KAGVNLLLTRWMKDLEKIFYGNIVAYDAAMLPEARPDELPNVIWKNIFSDDGLSKPNDAA 308

Query: 235 VRAVQAMTRYVRRETKKL 252
             AVQAM RY RRE   L
Sbjct: 309 AGAVQAMARYARRECSCL 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795925|ref|XP_002865847.1| ubiquinol-cytochrome C chaperone family protein [Arabidopsis lyrata subsp. lyrata] gi|297311682|gb|EFH42106.1| ubiquinol-cytochrome C chaperone family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 176/261 (67%), Positives = 206/261 (78%), Gaps = 8/261 (3%)

Query: 1   MLPRWCRAV------RSLNSITQRNDFHAISRQSYAMATAAAASVEPAPR-PTKQPVVSL 53
           MLPR  R V      RSL +     +    SR  YA    AAA   P    P+K P+ +L
Sbjct: 1   MLPRLARVVTQTSKLRSLTTNGSMKNLSFFSRYGYATVAPAAADPPPKKDFPSKSPI-NL 59

Query: 54  DKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQ 113
           DKMFWSKP SLAL  DSPLR+DEP Y GI+RFILKLM+FYSKQS SIRGANVIYKR+++Q
Sbjct: 60  DKMFWSKPCSLALPKDSPLRIDEPDYVGIRRFILKLMMFYSKQSMSIRGANVIYKRIIAQ 119

Query: 114 VDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRV 173
           VDKPAIYDVFNLEKTF++TFSLLVLHMW  LRRLKE+G+EGV+LGQY+YEIYNHDVE+RV
Sbjct: 120 VDKPAIYDVFNLEKTFKITFSLLVLHMWLVLRRLKEDGQEGVDLGQYVYEIYNHDVELRV 179

Query: 174 SKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDA 233
           SKAGVNLLL+KWMKELE+IFYGN+VA+DAALLPEAK +ELQ  +WRN+FSDDG++ PD+ 
Sbjct: 180 SKAGVNLLLAKWMKELERIFYGNVVAYDAALLPEAKPNELQIKLWRNVFSDDGTTTPDNT 239

Query: 234 AVRAVQAMTRYVRRETKKLCF 254
            ++A QAM RYVRRE   L  
Sbjct: 240 DLKAAQAMARYVRRELGSLSL 260

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8843859|dbj|BAA97385.1| unnamed protein product [Arabidopsis thaliana]

 Score =  345 bits (886), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 175/314 (55%), Positives = 217/314 (69%), Gaps = 45/314 (14%)

Query: 1   MLPRWCRAV------RSLNSITQRNDFHAISRQSYAMATAAAASVEPAPR---PTKQPV- 50
           MLPR  R V      RSL +     +    SR  Y  AT A A+ +P  +   P+K P+ 
Sbjct: 1   MLPRLARVVTQTSKLRSLTTNGSMKNLSFFSR--YGYATVAPAAADPPSQKDFPSKSPLL 58

Query: 51  ---------------------------------VSLDKMFWSKPASLALALDSPLRVDEP 77
                                            ++LDKMFWSKP SLAL  DSPLR+DEP
Sbjct: 59  MRSCCECLGLTIVFEPKLNLILSVSSFIECGTKINLDKMFWSKPCSLALPKDSPLRIDEP 118

Query: 78  KYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLV 137
            Y GI+RFILK+M+FYSKQS SIRGANVIYKR+++QVDKPAIYDVFNLEKTF++T+SLLV
Sbjct: 119 DYVGIRRFILKMMMFYSKQSMSIRGANVIYKRIIAQVDKPAIYDVFNLEKTFKITYSLLV 178

Query: 138 LHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNI 197
           LHMW  LRRLKE+G+EGV+LGQY+YEIYNHDVE+RVSKAGVNLLL+KWMKELE+IFYGN+
Sbjct: 179 LHMWLVLRRLKEDGQEGVDLGQYVYEIYNHDVELRVSKAGVNLLLAKWMKELERIFYGNV 238

Query: 198 VAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRRETKKLCFLGI 257
           VA+DAALLPEAK ++LQ  +WRN+FSDDG++ PD+  ++  QAM RYVRRE   L   G 
Sbjct: 239 VAYDAALLPEAKPNDLQIKLWRNVFSDDGTTTPDNTDLKTAQAMARYVRRELGSLSLTGT 298

Query: 258 SCSLHWRIHHLVRL 271
             ++    H++ R+
Sbjct: 299 YDAIVGMPHYVTRI 312

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461829|ref|XP_004148644.1| PREDICTED: ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog [Cucumis sativus] gi|449516820|ref|XP_004165444.1| PREDICTED: ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog [Cucumis sativus]

 Score =  344 bits (882), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 178/263 (67%), Positives = 208/263 (79%), Gaps = 9/263 (3%)

Query: 1   MLPRWCRAVRSLNSITQRNDF------HAISRQSYA-MATAAAASVEPAPRP-TKQPVVS 52
           ML +W R  R L+ I   ++F      H    +SYA +A AAA ++  + +  +   VV 
Sbjct: 1   MLAKWSRVTRHLSRIGLESNFKFSTDLHVCPHRSYAKVAAAAAPNIGHSEKGVSGGHVVH 60

Query: 53  LDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVS 112
           LDKMF SKP SLAL  DSPLR+DEP+YEGIKR  L++MLFYSKQSK IR ANVIY+RVVS
Sbjct: 61  LDKMFLSKPCSLALPKDSPLRMDEPQYEGIKRLFLRMMLFYSKQSKHIRAANVIYQRVVS 120

Query: 113 QVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMR 172
           QVDKPAIYDVFNLEKTF+ TFSLLVLHMW CLRRLKEEGKEGVE GQY+YE+YNHDVE+R
Sbjct: 121 QVDKPAIYDVFNLEKTFKTTFSLLVLHMWLCLRRLKEEGKEGVERGQYVYELYNHDVELR 180

Query: 173 VSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDD 232
           VSKAGVNLLL +WMK+LEKIFYGNIVA+D+A+LPEA +DEL NVIW+NI+SDDGSS P+ 
Sbjct: 181 VSKAGVNLLLIRWMKDLEKIFYGNIVAYDSAILPEAGKDELPNVIWKNIYSDDGSSMPNG 240

Query: 233 A-AVRAVQAMTRYVRRETKKLCF 254
           A A+RAVQAM RY RRE   L  
Sbjct: 241 APALRAVQAMARYTRREVSCLSL 263

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
TAIR|locus:2176227	281	AT5G51220 "AT5G51220" [Arabido	0.903	0.896	0.565	2e-72
MGI|MGI:1929472	295	Uqcc "ubiquinol-cytochrome c r	0.548	0.518	0.263	4.7e-06
UNIPROTKB|F6RX10	296	UQCC "Uncharacterized protein"	0.548	0.516	0.263	4.8e-06
RGD|1585681	299	Uqcc "ubiquinol-cytochrome c r	0.548	0.511	0.257	6.4e-06
UNIPROTKB|B7Z314	200	UQCC "Ubiquinol-cytochrome c r	0.548	0.765	0.257	8.6e-06
UNIPROTKB|F1NGP5	294	UQCC "Uncharacterized protein"	0.548	0.520	0.226	1.1e-05
ZFIN|ZDB-GENE-060929-1034	286	uqcc "ubiquinol-cytochrome c r	0.534	0.520	0.257	1.3e-05
UNIPROTKB|Q9NVA1	299	UQCC "Ubiquinol-cytochrome c r	0.548	0.511	0.257	3.3e-05
FB|FBgn0035722	259	CG10075 [Drosophila melanogast	0.580	0.625	0.219	0.00016

TAIR|locus:2176227 AT5G51220 "AT5G51220" [Arabidopsis thaliana (taxid:3702)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 146/258 (56%), Positives = 176/258 (68%)

Query:     1 MLPRWCRAV------RSLNSITQRNDFHAISRQSYXXXXXXXXXXXXXXXXTKQPVVSLD 54
             MLPR  R V      RSL +     +    SR  Y                  +  ++LD
Sbjct:     1 MLPRLARVVTQTSKLRSLTTNGSMKNLSFFSRYGYATVAPAAADPPSQKDFPSKSPINLD 60

Query:    55 KMFWSKXXXXXXXXXXXXRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQV 114
             KMFWSK            R+DEP Y GI+RFILK+M+FYSKQS SIRGANVIYKR+++QV
Sbjct:    61 KMFWSKPCSLALPKDSPLRIDEPDYVGIRRFILKMMMFYSKQSMSIRGANVIYKRIIAQV 120

Query:   115 DKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXXXXXXXXXXQYLYEIYNHDVEMRVS 174
             DKPAIYDVFNLEKTF++T+SLLVLHMW  LRR            QY+YEIYNHDVE+RVS
Sbjct:   121 DKPAIYDVFNLEKTFKITYSLLVLHMWLVLRRLKEDGQEGVDLGQYVYEIYNHDVELRVS 180

Query:   175 KAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAA 234
             KAGVNLLL+KWMKELE+IFYGN+VA+DAALLPEAK ++LQ  +WRN+FSDDG++ PD+  
Sbjct:   181 KAGVNLLLAKWMKELERIFYGNVVAYDAALLPEAKPNDLQIKLWRNVFSDDGTTTPDNTD 240

Query:   235 VRAVQAMTRYVRRETKKL 252
             ++  QAM RYVRRE   L
Sbjct:   241 LKTAQAMARYVRRELGSL 258

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

MGI|MGI:1929472 Uqcc "ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 128 (50.1 bits), Expect = 4.7e-06, P = 4.7e-06
 Identities = 43/163 (26%), Positives = 67/163 (41%)

Query:    91 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXX 150
             L YSK    I    + Y   V + D    +    +  TF   F + +LH+W CL R    
Sbjct:   102 LKYSKWKIKIAALRM-YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQE 160

Query:   151 XXXXXXXXQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 209
                     + +      DVE R    GVN  +L K M  +   FY  I+ +D  +L +  
Sbjct:   161 GRTGKYMCRIIVHFMWEDVEQRGRVMGVNSYILKKNMALMTNNFYAAILGYDEGILSD-- 218

Query:   210 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRRETKKL 252
                L   +WR  F+     K +D   R ++ +  YVR++ + L
Sbjct:   219 DHGLAAALWRTFFNQ----KCEDP--RQLELLVEYVRKQMQYL 255

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

UNIPROTKB|F6RX10 UQCC "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 128 (50.1 bits), Expect = 4.8e-06, P = 4.8e-06
 Identities = 43/163 (26%), Positives = 68/163 (41%)

Query:    91 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXX 150
             L YSK    I    + Y   V + D    +    +  TF   F + +LH+W CL R    
Sbjct:   103 LKYSKWKIKIAALRM-YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQE 161

Query:   151 XXXXXXXXQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 209
                     + +      DVE R    GVN  +L K M  +   FY  I+ +D  +L + +
Sbjct:   162 GRSGKYMCRIIVHFMWEDVEQRGRIMGVNPYILKKNMMLMTNNFYAAILGYDEGILSDDR 221

Query:   210 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRRETKKL 252
                L   +WR  F+     K +D   R ++ +  YVR++ + L
Sbjct:   222 G--LAAALWRTFFNQ----KCEDP--RQLELLVEYVRKQIQYL 256

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

RGD|1585681 Uqcc "ubiquinol-cytochrome c reductase complex chaperone" [Rattus norvegicus (taxid:10116)]

 Score = 127 (49.8 bits), Expect = 6.4e-06, P = 6.4e-06
 Identities = 42/163 (25%), Positives = 67/163 (41%)

Query:    91 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXX 150
             L YSK    I    + Y   V + D    +    +  TF   F + +LH+W CL R    
Sbjct:   106 LKYSKWKIKIAALRM-YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQE 164

Query:   151 XXXXXXXXQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 209
                     + +      DVE R    GVN  +L K M  +   FY  ++ +D  +L +  
Sbjct:   165 GRTGKYMCRIIVHFMWEDVEQRGRVMGVNSYILKKNMALMTNNFYAAVLGYDEGILSD-- 222

Query:   210 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRRETKKL 252
                L   +WR  F+     K +D   R ++ +  YVR++ + L
Sbjct:   223 DHGLAAALWRTFFNQ----KCEDP--RQLELLVEYVRKQMQYL 259

GO:0005739 "mitochondrion" evidence=ISO

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISO

UNIPROTKB|B7Z314 UQCC "Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog" [Homo sapiens (taxid:9606)]

 Score = 121 (47.7 bits), Expect = 8.6e-06, P = 8.6e-06
 Identities = 42/163 (25%), Positives = 67/163 (41%)

Query:    91 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXX 150
             L YSK    I    + Y   V + D    +    +  TF   F + +LH+W CL R    
Sbjct:     7 LKYSKWKIKIAALRM-YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQE 65

Query:   151 XXXXXXXXQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 209
                     + +      DV+ R    GVN  +L K M  +   FY  I+ +D  +L +  
Sbjct:    66 GRSGKYMCRIIVHFMWEDVQQRGRVMGVNPYILKKNMILMTNHFYAAILGYDEGILSD-- 123

Query:   210 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRRETKKL 252
                L   +WR  F+     K +D   R ++ +  YVR++ + L
Sbjct:   124 DHGLAAALWRTFFN----RKCEDP--RHLELLVEYVRKQIQYL 160

GO:0005739 "mitochondrion" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

UNIPROTKB|F1NGP5 UQCC "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 125 (49.1 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 37/163 (22%), Positives = 70/163 (42%)

Query:    91 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXX 150
             L YS+    +    + Y   V + D    ++   +  T    F +  LH+W CL R    
Sbjct:   101 LKYSRWKIKVAALRM-YTCCVEKTDYEEFFNRCQMPDTLNSWFLVAQLHVWMCLVRMKQE 159

Query:   151 XXXXXXXXQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 209
                     +Y+      DVE R    G+N ++L + ++ + + FY  +  +D  +L +  
Sbjct:   160 GRAGKYMCRYIVHCMWEDVEQRGKVMGINSVVLKQDLRSMVENFYAALFGYDEGILSD-- 217

Query:   210 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRRETKKL 252
                L   +WRN+F+ +    P     R ++ +  YVR++ + L
Sbjct:   218 DHVLAAALWRNLFNRN-CEDP-----RHLELLVEYVRKQVQHL 254

GO:0005739 "mitochondrion" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

ZFIN|ZDB-GENE-060929-1034 uqcc "ubiquinol-cytochrome c reductase complex chaperone" [Danio rerio (taxid:7955)]

 Score = 124 (48.7 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 41/159 (25%), Positives = 68/159 (42%)

Query:    91 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXX 150
             L Y+K    I    + Y   V +++    ++  +L  T    F +  LH+W CL R    
Sbjct:    93 LKYNKWKIKIAALRM-YTCCVERINYDEFFEKCSLPDTLNSWFLVAQLHVWMCLVRMRQE 151

Query:   151 XXXXXXXXQYLYEIYNHDVEMRVSKAGVNLLLSKW-MKELEKIFYGNIVAFDAALLPEAK 209
                     +Y+      DVE R    G++    K  MK + + FY  +  +D  +L +  
Sbjct:   152 GRAGKYMCRYIVHSMWEDVEQRSKIMGIDAHQRKESMKVMTETFYAALFGYDEGILSD-- 209

Query:   210 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRRE 248
                L   IWRNIF+     + +D   R ++ M  YVR++
Sbjct:   210 DCVLAAAIWRNIFN----RQCEDP--RQLEMMVEYVRKQ 242

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9NVA1 UQCC "Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog" [Homo sapiens (taxid:9606)]

 Score = 121 (47.7 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 42/163 (25%), Positives = 67/163 (41%)

Query:    91 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXX 150
             L YSK    I    + Y   V + D    +    +  TF   F + +LH+W CL R    
Sbjct:   106 LKYSKWKIKIAALRM-YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQE 164

Query:   151 XXXXXXXXQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 209
                     + +      DV+ R    GVN  +L K M  +   FY  I+ +D  +L +  
Sbjct:   165 GRSGKYMCRIIVHFMWEDVQQRGRVMGVNPYILKKNMILMTNHFYAAILGYDEGILSD-- 222

Query:   210 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRRETKKL 252
                L   +WR  F+     K +D   R ++ +  YVR++ + L
Sbjct:   223 DHGLAAALWRTFFN----RKCEDP--RHLELLVEYVRKQIQYL 259

GO:0005739 "mitochondrion" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

FB|FBgn0035722 CG10075 [Drosophila melanogaster (taxid:7227)]

 Score = 114 (45.2 bits), Expect = 0.00016, P = 0.00016
 Identities = 39/178 (21%), Positives = 79/178 (44%)

Query:    82 IKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMW 141
             +KR + K+    + +++    ++++Y+ V  +++    +  FNL  TF   F +  LH+W
Sbjct:    67 LKRVLNKVGFTPNTKARLKVTSHLLYESVADKINYVTFFRDFNLPNTFNSWFLVTELHVW 126

Query:   142 FCLRRXXXXXXXXXXXXQYL----YEIYNHDVEMRVSKAGVNLLLSKWMKELEKI---FY 194
               L R            ++L     E    DV  R  K G +   S+  +++E +   F 
Sbjct:   127 LLLMRSMAEGSETGEDGRFLRNCIVEAMWGDVNTRAKKLGAHNP-SRTRQQIETLSEQFQ 185

Query:   195 GNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRRETKKL 252
               ++A+D  ++ + +   L   +WR  F        DD A   ++ + +YVR++   L
Sbjct:   186 AALIAYDEGIMSDDRV--LACALWRRFFE----MNCDDYA--QIERLVKYVRQQASML 235


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      279       239   0.00092  113 3  11 22  0.49    32
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  197 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.08u 0.14s 18.22t   Elapsed:  00:00:01
  Total cpu time:  18.09u 0.14s 18.23t   Elapsed:  00:00:01
  Start:  Fri May 10 11:29:18 2013   End:  Fri May 10 11:29:19 2013

GO:0007030 "Golgi organization" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	279
pfam03981	139	pfam03981, Ubiq_cyt_C_chap, Ubiquinol-cytochrome C	2e-31
COG5452	180	COG5452, COG5452, Uncharacterized conserved protei	9e-14

>gnl|CDD|217828 pfam03981, Ubiq_cyt_C_chap, Ubiquinol-cytochrome C chaperone

 Score =  113 bits (284), Expect = 2e-31
 Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 10/129 (7%)

Query: 121 DVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGV-N 179
           +   +  TF   F + VLH+W  LRRL+ EG EG EL Q L++ +  DV+ R+ + GV +
Sbjct: 1   EALGVPDTFNGRFQMTVLHVWLLLRRLRAEGPEGKELEQELFDAFFEDVDARLREEGVGD 60

Query: 180 LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQ 239
           L + K MK+L + FYG ++A+D AL   +    L   +WRN++               + 
Sbjct: 61  LSVPKRMKKLAEAFYGRLLAYDEALG--SDDAALAAALWRNLY-------KGVVDPEKLA 111

Query: 240 AMTRYVRRE 248
            +  YVR +
Sbjct: 112 GLVGYVRAQ 120

Length = 139

>gnl|CDD|227739 COG5452, COG5452, Uncharacterized conserved protein [Function unknown]

 Score = 67.5 bits (165), Expect = 9e-14
 Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 10/141 (7%)

Query: 89  LMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLK 148
           L LF  K+  ++     +Y  +V+   +PA Y    +  T    F +L LHM     RLK
Sbjct: 3   LDLFLKKRPANLAIVKRLYASIVAAARQPAFYRDLGVPDTPLGRFEMLSLHMILYFHRLK 62

Query: 149 EEGKEGVELGQYLYEIYNHDV-----EMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAA 203
            EG+   E+ Q + + +  DV     E+ +   GV     K MK+L  +FYG + A+DAA
Sbjct: 63  GEGEAAQEIAQEIVDAFFKDVDHSLRELGIGDQGV----PKRMKKLAGMFYGRLEAYDAA 118

Query: 204 LLPEAKQDELQNVIWRNIFSD 224
            L       L   + RNI  D
Sbjct: 119 -LDGNDATALAAALARNIRPD 138

Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
KOG2873	284	consensus Ubiquinol cytochrome c reductase assembl	100.0
COG5452	180	Uncharacterized conserved protein [Function unknow	100.0
PF03981	141	Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone	100.0

>KOG2873 consensus Ubiquinol cytochrome c reductase assembly protein CBP3 [Energy production and conversion]

Probab=100.00  E-value=9.6e-55  Score=397.54  Aligned_cols=258  Identities=39%  Similarity=0.597  Sum_probs=220.2

Q ss_pred             chhHHHhhhhhccccccchhhhhhhhHHHHHHhhhcccCC----CCC----------CC-CCCccccccccccCCccccc
Q 023622            2 LPRWCRAVRSLNSITQRNDFHAISRQSYAMATAAAASVEP----APR----------PT-KQPVVSLDKMFWSKPASLAL   66 (279)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----------~~-~~~~~~~~~~~~~kp~s~~~   66 (279)
                      ++|.+|.+....+|.+ +.+...+......+.-+ |.++|    .|-          ++ .+=.+++++++|++|||++.
T Consensus         1 Ms~~~~v~~~~~~~~~-tp~~s~~~y~~~t~~~~-~~p~~~l~~spc~~~~~~pV~e~q~~~l~~~~d~~k~~~P~~~~~   78 (284)
T KOG2873|consen    1 MSRLRRVLRLTPKLRR-TPVGSMKIYSHFTRYFG-ASPSPLLNSSPCECSGLTPVFEPQNLPLSVNLDSMKWSPPCSLAA   78 (284)
T ss_pred             CchhHHhhccCcceee-ccccccccccccccccc-CCChhhhccCccccccCCcccccccccccccccccccCCCcchhh
Confidence            3678888888999988 66666655544444422 22211    010          00 02234888999999999999


Q ss_pred             cCCCCCCCCCcchhhHHHHHHHHhhcccCCchhhhhHHHHHHHHHHhcCchhhHhhhCCCCchhhHHHHHHHHHHHHHHH
Q 023622           67 ALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRR  146 (279)
Q Consensus        67 ~~~s~~~~~e~~~~g~~~~i~kl~gf~sk~s~~~r~a~~LY~~iv~qar~p~fY~~~glpDTF~~wF~m~~LHvWLll~R  146 (279)
                      ..+.+.++-||...|+++++.+..-+|..    .+++.++|..|+++.+.+.||++|+|||||++||+||+||+|||++|
T Consensus        79 ~~~~~~ri~~~d~~gf~~~~~~~s~~y~~----~~as~~~y~~~~~~~df~~fy~~f~Lp~TF~sWf~iT~LH~W~ll~R  154 (284)
T KOG2873|consen   79 KGGLPLRIDEPDKVGFRRFILTGSMKYKI----QSASIQIYKDCIAQVDFEAFYEDFNLPDTFSSWFQITVLHVWLLLMR  154 (284)
T ss_pred             ccCceeeeccccccceeeccchhHHHHHH----HHHHHHHHhhhhhhccHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988888765554    33455699999999999999999999999999999999999999999


Q ss_pred             HhhcCc-chhhHHHHHHHHHHHHHHHHHHHhc-cc-hhhhHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHhhcc
Q 023622          147 LKEEGK-EGVELGQYLYEIYNHDVEMRVSKAG-VN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFS  223 (279)
Q Consensus       147 Lr~eg~-~g~~l~Q~L~D~ff~DvE~rlRe~G-V~-~~v~K~mK~L~~~fyG~~~AYDeaL~~~d~d~~LAaALWRNvf~  223 (279)
                      ||+||. +|+.++|.|++.||+|||.|++++| || ...+++||+|.++|||+++|||||+.++  |.+||.|||||+|+
T Consensus       155 l~~eg~~~g~~l~q~lv~~mw~DvelR~~k~gkvN~~r~~~~mk~l~~qf~gaifaYDeG~l~d--D~vLA~alWRnlF~  232 (284)
T KOG2873|consen  155 LKAEGQGEGVDLQQYLVERMWEDVELRLSKAGKVNSLRTKQYMKDLERQFYGAIFAYDEGFLSD--DRVLATALWRNLFS  232 (284)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhccccccc--chHHHHHHHHHHhC
Confidence            999997 8999999999999999999999999 99 4566699999999999999999999976  58999999999999


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHhhhccCcccccccccceeeccc
Q 023622          224 DDGSSKPDDAAVRAVQAMTRYVRRETKKLCFLGISCSLHWRIHHLVRLE  272 (279)
Q Consensus       224 ~~~~~~p~~~d~~~l~~La~YVR~ql~~L~~~~~~~vl~g~i~~~~~~~  272 (279)
                      +++     ++|+.+++.+|+|||+|+..|+.+++++++.|...+|+++-
T Consensus       233 ~r~-----~~D~~hle~vV~YvR~qv~~Ls~l~t~dfivg~~v~f~pl~  276 (284)
T KOG2873|consen  233 GRG-----NVDLVHLEAVVRYVRSQVYSLSSLSTDDFIVGGPVLFVPLQ  276 (284)
T ss_pred             CCC-----CcCHHHHHHHHHHHHHHHHHHhccChhhhhccCceeeccCC
Confidence            985     35789999999999999999999999999999999999993

>COG5452 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=4.2e-41  Score=287.13  Aligned_cols=173  Identities=24%  Similarity=0.358  Sum_probs=158.7

Q ss_pred             hhcccCCch-hhhhHHHHHHHHHHhcCchhhHhhhCCCCchhhHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHH
Q 023622           90 MLFYSKQSK-SIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHD  168 (279)
Q Consensus        90 ~gf~sk~s~-~~r~a~~LY~~iv~qar~p~fY~~~glpDTF~~wF~m~~LHvWLll~RLr~eg~~g~~l~Q~L~D~ff~D  168 (279)
                      ++.|.|++. +...+.++|..+|+++|+|.||.++|||||..|||+|+.|||.++++|+|.+|+.+.+++|+|+|.||.|
T Consensus         3 ~~lf~k~~~an~Ai~krlYa~~vaaARq~~fY~d~~VpDt~~GRfEmlSlh~il~~~R~kg~g~a~qeiaQei~Daff~d   82 (180)
T COG5452           3 LDLFLKKRPANLAIVKRLYASIVAAARQPAFYRDLGVPDTPLGRFEMLSLHMILYFHRLKGEGEAAQEIAQEIVDAFFKD   82 (180)
T ss_pred             hHHhcCCCchhHHHHHHHHHHHHHHHhchhHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh
Confidence            344567774 5666788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccc-hhhhHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHH
Q 023622          169 VEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRR  247 (279)
Q Consensus       169 vE~rlRe~GV~-~~v~K~mK~L~~~fyG~~~AYDeaL~~~d~d~~LAaALWRNvf~~~~~~~p~~~d~~~l~~La~YVR~  247 (279)
                      +|+++||+||+ ..|+|+||||+.+||||+.+||.||... |..+|++||-||++.+.+       ++.....|+.||.+
T Consensus        83 vDhs~RElGigD~gVpKrMKKlAgmFYGRl~aY~aAld~~-d~~alaaal~Rn~~pd~~-------~~p~a~~La~yv~~  154 (180)
T COG5452          83 VDHSLRELGIGDQGVPKRMKKLAGMFYGRLEAYDAALDGN-DATALAAALARNIRPDVE-------DWPEAAGLATYVLK  154 (180)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHhHHHHHHHHhccc-chHHHHHHHHHhcccccc-------ccchhHHHHHHHHH
Confidence            99999999998 8999999999999999999999999876 468999999999997655       34568999999999


Q ss_pred             HHHhhhccCcccccccccceeec
Q 023622          248 ETKKLCFLGISCSLHWRIHHLVR  270 (279)
Q Consensus       248 ql~~L~~~~~~~vl~g~i~~~~~  270 (279)
                      .-.+|..+|++.|.+|++++-.|
T Consensus       155 ~~~~Laaq~~eal~~G~~t~p~p  177 (180)
T COG5452         155 VRDALAAQPEEALATGDLTWPLP  177 (180)
T ss_pred             HHHHHHcCcHHHHHhCceeecCC
Confidence            99999999999999999987544

>PF03981 Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone ; InterPro: IPR021150 Saccharomyces cerevisiae ubiquinol-cytochrome C chaperone is required for assembly of coenzyme QF-2-cytochrome C reductase

Probab=100.00  E-value=4.8e-38  Score=261.84  Aligned_cols=140  Identities=36%  Similarity=0.587  Sum_probs=131.6

Q ss_pred             hhhCCCCchhhHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHHHHHHHHHHHH
Q 023622          121 DVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVA  199 (279)
Q Consensus       121 ~~~glpDTF~~wF~m~~LHvWLll~RLr~eg~~g~~l~Q~L~D~ff~DvE~rlRe~GV~-~~v~K~mK~L~~~fyG~~~A  199 (279)
                      ++||+||||++||+++.||+||+++|||.++++|+.+.|.|+|.||+|+|.+||++||+ ..++|+||+|.++|||++.+
T Consensus         1 ~~~~~~dt~~~~f~~~~lh~~l~~~RLk~~~~~~~~~~q~l~~~~~~d~~~~l~~~gv~d~~~~k~~k~l~~~~~g~~~a   80 (141)
T PF03981_consen    1 EHFGVPDTFAGRFQMLGLHVWLVLRRLKAEGKEGKELEQALFDKFFEDMDERLREMGVGDLSVGKRMKKLQEQFYGRLLA   80 (141)
T ss_pred             CCCCCccCHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999998899999999999999999999999997 88899999999999999999


Q ss_pred             HHHhhCCCCChHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHHHHhhhccCcccccccccce
Q 023622          200 FDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRRETKKLCFLGISCSLHWRIHH  267 (279)
Q Consensus       200 YDeaL~~~d~d~~LAaALWRNvf~~~~~~~p~~~d~~~l~~La~YVR~ql~~L~~~~~~~vl~g~i~~  267 (279)
                      ||+|+..  ++.+||+|||||+|.+..+     .++.+++.|++|||+++.+|+.+|.++++.|.+.+
T Consensus        81 yd~al~~--~~~~La~al~rnv~~~~~~-----~~~~~~~~l~~yv~~~~~~l~~~~~~~~~~g~~~~  141 (141)
T PF03981_consen   81 YDEALGS--DDAALAAALWRNVFGGREE-----RDPAQLAGLAGYVRRQLWHLDDLPDPAYLVGIPRF  141 (141)
T ss_pred             HHHHhcc--CHHHHHHHHHHHHHhCccc-----cCHHHHHHHHHHHHHHHHHHHCCCHHHHHhCCCCC
Confidence            9999986  4799999999999998732     35679999999999999999999999999998864

It appears to be found in a number of different organisms including Homo sapiens, Caenorhabditis elegans and Rhizobium meliloti. This entry also contains bacterial proteins belonging to the UPF0174 family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	279
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 40/296 (13%), Positives = 94/296 (31%), Gaps = 63/296 (21%)

Query: 5   W-----CRAVRSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQPVVSLDKMFWS 59
           W     C +  ++  +            ++   T+ +                L ++  S
Sbjct: 186 WLNLKNCNSPETV--LEMLQKLLYQIDPNW---TSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 60  K--PASLALALDSPLRVDEPKYEGIKRFILKL-MLFYSKQSKSIRGANVIYKRVVSQVDK 116
           K     L L L +   V   K      F L   +L  ++  +     +      +S    
Sbjct: 241 KPYENCL-LVLLN---VQNAKA--WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 117 PAIYDVFNLEKTFRMTFSLLVLHM-WFCLRR------------LKEEGKEGVELGQYLYE 163
                    ++    +  L  L      L R            + E  ++G+      ++
Sbjct: 295 S---MTLTPDEV--KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WK 348

Query: 164 IYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAF-DAALLPEAKQDELQNVIWRNIF 222
             N D    + ++ +N+L     +++    +  +  F  +A +P      L ++IW ++ 
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKM----FDRLSVFPPSAHIPT----ILLSLIWFDVI 400

Query: 223 SDDGSSKPDDAAVRAVQAMTRY--VRRETKKLCFLGISCSLHWRIHHLVRLEGEAE 276
             D            V  + +Y  V ++ K+      + S+   I+  ++++ E E
Sbjct: 401 KSD----VMV----VVNKLHKYSLVEKQPKES-----TISIP-SIYLELKVKLENE 442

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00