Citrus Sinensis ID: 023626

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MLHSLHLPIVSSYSSDKSSNPPSFSSSQNPPLYLKFKTSHRENLRYLRAIGVIDPSTKPHKLPSPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKKLNVPSTLNARLLNTRVERLRETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNVRIKLNKMLLWSDNRFYTKWK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccEEEcHHHHHHHHHHHHHHHHcccHHHHHHcccccccccccHHHHHHHHHHHcccccccHHHccccHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccHcccHHHHHccccccccHHHHHHHccHHcccccHccHHHHHHHHHHcccccHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccEEEccccccccHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHccccHHHHHHHccHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHcHHHHHHHHHHHcccHHHHHHcHHHHcccHHHHccHHHHHHHHccccccHHHHHcccHHHHHHHcc
Coil and Loop (DISEMBL)
mlhslhlpivssyssdkssnppsfsssqnpplylkFKTSHRENLRYLRAigvidpstkphklpspevVSQILSTIDFfkskgltnghfsrlaylcpqffsinfdpseiepvFDFLITDLHASVEERrgliigcpqmlssnveyclKPTLDYLTKLGVKKLNVPSTLNARLLNTRVERLRETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEElkefpqyfgfslgkriaprhwhlkqRNVRIKLNKMLlwsdnrfytkwk
Flexible Loop (DISEMBL)
MLHSLHLPIVSsyssdkssnppsfsssqnpplYLKFKTSHRENLRYLRAIGVIDPSTKPHKLPSPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGvkklnvpstlnarllntrvERLRETLRFlrsiglnrrEAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKriaprhwhlkqrnvriklnkmllwsdnrfytkwk
Low Complexity Region (SEG)
MLHSLHLpivssyssdkssnppsfsssqnppLYLKFKTSHRENLRYLRAIGVIDPSTKPHKLPSPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKKLNVPSTLNARLLNTRVERLRETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNVRIKLNKMLLWSDNRFYTKWK
Disordered region (IsUnstruct)
********************************YLKFKTSHRENLRYLRAIGVID***********EVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKKLNVPSTLNARLLNTRVERLRETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNVRIKLNKMLLWSDNRFYTK**
Disordered Region (DISOPRED)
***SLHL********************************HRENLRYLRAIGVIDPSTKPHKLPSPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKKLNVPSTLNARLLNTRVERLRETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNVRIKLNKMLLWSDNRFYTKWK
Disordered Region (DISEMBL)
MLHSLHLPIVS*****************NPPLYLKFKTSHRENLRYLRAIGVIDPSTKPHKLPSPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKKLNVPSTLNARLLNTRVERLRETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNVRIKLNKMLLWSDNRFYTKWK
Disordered Region (DISPRO)
*L*SLHLPIVSSYSSDKSSNPPSFSSSQNPPLYLKFKTSHRENLRYLRAIGVIDPSTKPHKLPSPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKKLNVPSTLNARLLNTRVERLRETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNVRIKLNKMLLWSDNRFYTKWK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLHSLHLPIVSSYSSDKSSNPPSFSSSQNPPLYLKFKTSHRENLRYLRAIGVIDPSTKPHKLPSPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKKLNVPSTLNARLLNTRVERLRETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNVRIKLNKMLLWSDNRFYTKWK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
255556125	276	conserved hypothetical protein [Ricinus	0.989	1.0	0.648	1e-102
359475306	276	PREDICTED: uncharacterized protein LOC10	0.989	1.0	0.637	3e-95
224077802	281	predicted protein [Populus trichocarpa]	0.942	0.935	0.608	2e-90
15230219	274	Mitochondrial transcription termination	0.881	0.897	0.588	1e-82
297834802	276	hypothetical protein ARALYDRAFT_898263 [	0.881	0.891	0.576	3e-81
449506425	282	PREDICTED: uncharacterized LOC101203623	0.881	0.872	0.570	4e-80
449438713	308	PREDICTED: uncharacterized protein LOC10	0.881	0.798	0.570	5e-80
356568579	274	PREDICTED: uncharacterized protein LOC10	0.967	0.985	0.516	8e-78
357507997	284	hypothetical protein MTR_7g081270 [Medic	0.885	0.869	0.514	1e-69
356530561	302	PREDICTED: uncharacterized protein LOC10	0.942	0.870	0.358	1e-34

>gi|255556125|ref|XP_002519097.1| conserved hypothetical protein [Ricinus communis] gi|223541760|gb|EEF43308.1| conserved hypothetical protein [Ricinus communis]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/279 (64%), Positives = 225/279 (80%), Gaps = 3/279 (1%)

Query: 1   MLHSLHLPIVSSYSSDKSSNPPSFSSSQNPPLYLKFKTSHRENLRYLRAIGVIDPSTKPH 60
           MLHSL LP  SS S  K  NP + S   +P  YLKF+T+++EN+RYL+AIG+IDP+TKPH
Sbjct: 1   MLHSLSLPAFSSSSQPKILNPYNLS---HPSFYLKFRTTNQENVRYLKAIGIIDPNTKPH 57

Query: 61  KLPSPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLH 120
           KLPSP+ V+ IL+T++FFKSKG  +  FSRL   CPQ  S  F+ ++IEPVF FL TDLH
Sbjct: 58  KLPSPDTVTHILNTVNFFKSKGFQDADFSRLTSECPQLLSSEFEITDIEPVFKFLDTDLH 117

Query: 121 ASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKKLNVPSTLNARLLNTRVERLRE 180
           ASV+E RGL+  CP++L S+VEYCL+PTLDYL +L V KLNVPS LNA LLNTRVE+LR 
Sbjct: 118 ASVQESRGLVTNCPELLFSDVEYCLRPTLDYLRQLRVAKLNVPSKLNAHLLNTRVEKLRS 177

Query: 181 TLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFG 240
            ++FL+S+GL+ +EAA FCAR+PAIFGY+I+++L+ K E+L   MERS+EELKEFPQYFG
Sbjct: 178 KVKFLKSVGLSHQEAASFCARIPAIFGYSIDYNLRPKLEYLLKGMERSMEELKEFPQYFG 237

Query: 241 FSLGKRIAPRHWHLKQRNVRIKLNKMLLWSDNRFYTKWK 279
           FSL KRI PRH HLKQRNVR+KLN+ML+WSD RFY KWK
Sbjct: 238 FSLRKRIIPRHLHLKQRNVRLKLNRMLIWSDQRFYAKWK 276

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475306|ref|XP_003631646.1| PREDICTED: uncharacterized protein LOC100853221 [Vitis vinifera] gi|297741449|emb|CBI32580.3| unnamed protein product [Vitis vinifera]

 Score =  353 bits (907), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 178/279 (63%), Positives = 219/279 (78%), Gaps = 3/279 (1%)

Query: 1   MLHSLHLPIVSSYSSDKSSNPPSFSSSQNPPLYLKFKTSHRENLRYLRAIGVIDPSTKPH 60
           MLHSLH+P +SS  S  S    S SSS++PP  L+F+TSHRENLRYL+ +G+IDPSTKPH
Sbjct: 1   MLHSLHIPTISSIKSPSSQ---SLSSSEHPPYLLRFRTSHRENLRYLKTLGIIDPSTKPH 57

Query: 61  KLPSPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLH 120
           K PSPE V Q+LST++F KSKG +   F RL++LCP+ FS + DP++IEPVFDFL  DL 
Sbjct: 58  KFPSPEAVDQVLSTVNFLKSKGFSEPDFPRLSFLCPKLFSSDSDPTDIEPVFDFLTLDLA 117

Query: 121 ASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKKLNVPSTLNARLLNTRVERLRE 180
           AS +E   LI+ CPQ+L S+VEYCL+PTL YL KLGV+KLNVP++LNA LLNTRVERL  
Sbjct: 118 ASDQESCSLILRCPQILLSDVEYCLRPTLLYLRKLGVEKLNVPTSLNAHLLNTRVERLVA 177

Query: 181 TLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFG 240
            +RFLRS+GL+  E+A  C R PA+FGY+IE++LK KF +L  EM+RS+EELK FPQYF 
Sbjct: 178 KIRFLRSVGLSYEESARACGRFPAVFGYSIENNLKPKFNYLVREMKRSVEELKVFPQYFA 237

Query: 241 FSLGKRIAPRHWHLKQRNVRIKLNKMLLWSDNRFYTKWK 279
           FSL  RI PRH HL+QRNVRI L +MLLWSD +FY KWK
Sbjct: 238 FSLENRIMPRHLHLEQRNVRISLKRMLLWSDQKFYAKWK 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077802|ref|XP_002305414.1| predicted protein [Populus trichocarpa] gi|222848378|gb|EEE85925.1| predicted protein [Populus trichocarpa]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 160/263 (60%), Positives = 204/263 (77%)

Query: 17  KSSNPPSFSSSQNPPLYLKFKTSHRENLRYLRAIGVIDPSTKPHKLPSPEVVSQILSTID 76
           K   P   S S +P  Y+KF+T+H ENLRYL+AIGVI P++K  + P+P+ +S IL+T+ 
Sbjct: 18  KPLKPRHLSPSPHPSHYIKFRTAHHENLRYLKAIGVIGPNSKSRQFPTPDAISHILATLK 77

Query: 77  FFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQM 136
           FF+SKG     F+RL +LCP+  S+NFD ++IEPVF FL  DLHASV+E RGL+I CP++
Sbjct: 78  FFESKGFLETDFARLTFLCPELLSLNFDITDIEPVFQFLTDDLHASVQESRGLVIKCPRL 137

Query: 137 LSSNVEYCLKPTLDYLTKLGVKKLNVPSTLNARLLNTRVERLRETLRFLRSIGLNRREAA 196
           L S+VEY L+PTL+YL +LGV KLNVPS LNA LLN RVE+++    FLRSIG +  EAA
Sbjct: 138 LFSDVEYFLRPTLNYLRQLGVNKLNVPSNLNAHLLNIRVEKMQVRFEFLRSIGFSHDEAA 197

Query: 197 EFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQ 256
             C R+PAIFGY+IE++L+ K E+L  EM+RSL+ELKEFPQYF FSL K+I PRH HLK+
Sbjct: 198 NICGRLPAIFGYSIENNLRPKVEYLVDEMKRSLDELKEFPQYFAFSLEKKIMPRHLHLKR 257

Query: 257 RNVRIKLNKMLLWSDNRFYTKWK 279
           RNV+IKLN+MLLWSD RFY KWK
Sbjct: 258 RNVKIKLNRMLLWSDGRFYGKWK 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230219|ref|NP_188517.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] gi|9294696|dbj|BAB03096.1| unnamed protein product [Arabidopsis thaliana] gi|117958999|gb|ABK59696.1| At3g18870 [Arabidopsis thaliana] gi|332642641|gb|AEE76162.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 146/248 (58%), Positives = 188/248 (75%), Gaps = 2/248 (0%)

Query: 32  LYLKFKTSHRENLRYLRAIGVIDPSTKPHKLPSPEVVSQILSTIDFFKSKGLTNGHFSRL 91
           LYLKF+TSHRENLR+L ++G++     P   P    +S ILS ++  KSKG+++  F RL
Sbjct: 28  LYLKFQTSHRENLRHLSSLGIV--PQNPRLAPPANDLSVILSAVNLLKSKGISDEDFPRL 85

Query: 92  AYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDY 151
            +LCPQ FS  FD S+++PVFDFL  +L AS EE RGLI+ CP +L S+VEYCL+PTL Y
Sbjct: 86  VFLCPQLFSPTFDISKLDPVFDFLTGELGASAEESRGLIVNCPNILFSDVEYCLRPTLVY 145

Query: 152 LTKLGVKKLNVPSTLNARLLNTRVERLRETLRFLRSIGLNRREAAEFCARMPAIFGYNIE 211
           L +LGV+ LN  S  NA +LNTRVE+LR  +RFL+SIG    EAA  C R+PAIFGY++E
Sbjct: 146 LKELGVRNLNRASKTNAHVLNTRVEKLRAKMRFLKSIGFEHEEAARVCGRIPAIFGYSVE 205

Query: 212 HHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNVRIKLNKMLLWSD 271
            +L+ KFEFL  +MER LEELK+FPQYF FSLGKRI PRHWHLK++NVR+ L++ML+W D
Sbjct: 206 DNLRPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRPRHWHLKKKNVRVSLSRMLMWGD 265

Query: 272 NRFYTKWK 279
            +FY+KWK
Sbjct: 266 QKFYSKWK 273

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834802|ref|XP_002885283.1| hypothetical protein ARALYDRAFT_898263 [Arabidopsis lyrata subsp. lyrata] gi|297331123|gb|EFH61542.1| hypothetical protein ARALYDRAFT_898263 [Arabidopsis lyrata subsp. lyrata]

 Score =  307 bits (787), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 143/248 (57%), Positives = 188/248 (75%), Gaps = 2/248 (0%)

Query: 32  LYLKFKTSHRENLRYLRAIGVIDPSTKPHKLPSPEVVSQILSTIDFFKSKGLTNGHFSRL 91
           LYLKF+TSHRENLR+L ++G++     P   P    +  I S ++F KSKG+++  F RL
Sbjct: 30  LYLKFQTSHRENLRHLSSLGIV--PQNPRLAPPANDLPVIFSAVNFLKSKGISDEDFPRL 87

Query: 92  AYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDY 151
            +LCPQ FS  FD S+I+PVFDFL  +L AS EE +GLI+ CP +L S+VEY L+PTL Y
Sbjct: 88  VFLCPQLFSPTFDISKIDPVFDFLTGELGASTEESKGLIVNCPNILLSDVEYFLRPTLVY 147

Query: 152 LTKLGVKKLNVPSTLNARLLNTRVERLRETLRFLRSIGLNRREAAEFCARMPAIFGYNIE 211
           L +LG++ LN  S +NA +LNTRVE+LR  +RFL+SIG    EAA  C R+PAIFGY+++
Sbjct: 148 LKELGLRNLNRASKMNAHVLNTRVEKLRAKMRFLKSIGFEHEEAARVCGRIPAIFGYSVD 207

Query: 212 HHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNVRIKLNKMLLWSD 271
            +L+ KFEFL  +MER LEELK+FPQYFGFSLGKRI PRHWHLK++NVR+ L++ML+W D
Sbjct: 208 DNLRPKFEFLVYDMERELEELKKFPQYFGFSLGKRIKPRHWHLKKKNVRVSLSRMLMWGD 267

Query: 272 NRFYTKWK 279
            +FY+KWK
Sbjct: 268 QKFYSKWK 275

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506425|ref|XP_004162746.1| PREDICTED: uncharacterized LOC101203623 [Cucumis sativus]

 Score =  303 bits (777), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 142/249 (57%), Positives = 186/249 (74%), Gaps = 3/249 (1%)

Query: 31  PLYLKFKTSHRENLRYLRAIGVIDPSTKPHKLPSPEVVSQILSTIDFFKSKGLTNGHFSR 90
           P  + F+TSH +N+RYL+++ VIDP T+ H   SP+ V QIL+T+ F KSKG ++  F R
Sbjct: 37  PPSINFRTSHHQNIRYLKSLNVIDPQTRFH---SPDAVHQILTTVHFLKSKGFSDSDFPR 93

Query: 91  LAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLD 150
           LA+LCP  F+ NFD ++I PVF FL TD+ AS++E RGLI+ CP++L S+VE CLKPT  
Sbjct: 94  LAFLCPNLFTSNFDTTDIAPVFQFLATDISASLQESRGLILRCPKILFSDVELCLKPTHR 153

Query: 151 YLTKLGVKKLNVPSTLNARLLNTRVERLRETLRFLRSIGLNRREAAEFCARMPAIFGYNI 210
           +L +LG++ L  PS LN+ LLNTRVE+LR  +RF + IG +  EA++ C RMPA+FGY++
Sbjct: 154 FLKQLGIENLKSPSNLNSHLLNTRVEKLRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSV 213

Query: 211 EHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNVRIKLNKMLLWS 270
           + +LK K+E+   EMER LEELK FPQYFGFSL  RI PRH HLKQR + I LN MLLWS
Sbjct: 214 KENLKPKYEYFVKEMERDLEELKGFPQYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWS 273

Query: 271 DNRFYTKWK 279
            NRFY+KWK
Sbjct: 274 HNRFYSKWK 282

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438713|ref|XP_004137132.1| PREDICTED: uncharacterized protein LOC101203623 [Cucumis sativus]

 Score =  303 bits (776), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 142/249 (57%), Positives = 186/249 (74%), Gaps = 3/249 (1%)

Query: 31  PLYLKFKTSHRENLRYLRAIGVIDPSTKPHKLPSPEVVSQILSTIDFFKSKGLTNGHFSR 90
           P  + F+TSH +N+RYL+++ VIDP T+ H   SP+ V QIL+T+ F KSKG ++  F R
Sbjct: 63  PPSINFRTSHHQNIRYLKSLNVIDPQTRFH---SPDAVHQILTTVHFLKSKGFSDSDFPR 119

Query: 91  LAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLD 150
           LA+LCP  F+ NFD ++I PVF FL TD+ AS++E RGLI+ CP++L S+VE CLKPT  
Sbjct: 120 LAFLCPNLFTSNFDTTDIAPVFQFLATDISASLQESRGLILRCPKILFSDVELCLKPTHR 179

Query: 151 YLTKLGVKKLNVPSTLNARLLNTRVERLRETLRFLRSIGLNRREAAEFCARMPAIFGYNI 210
           +L +LG++ L  PS LN+ LLNTRVE+LR  +RF + IG +  EA++ C RMPA+FGY++
Sbjct: 180 FLKQLGIENLKSPSNLNSHLLNTRVEKLRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSV 239

Query: 211 EHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNVRIKLNKMLLWS 270
           + +LK K+E+   EMER LEELK FPQYFGFSL  RI PRH HLKQR + I LN MLLWS
Sbjct: 240 KENLKPKYEYFVKEMERDLEELKGFPQYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWS 299

Query: 271 DNRFYTKWK 279
            NRFY+KWK
Sbjct: 300 HNRFYSKWK 308

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568579|ref|XP_003552488.1| PREDICTED: uncharacterized protein LOC100812333 [Glycine max]

 Score =  296 bits (757), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 143/277 (51%), Positives = 191/277 (68%), Gaps = 7/277 (2%)

Query: 3   HSLHLPIVSSYSSDKSSNPPSFSSSQNPPLYLKFKTSHRENLRYLRAIGVIDPSTKPHKL 62
           +SLHLPI SSYS   + +P       N   Y+KF+T +RENLRYLRA+ +IDP TKP  L
Sbjct: 5   YSLHLPITSSYSHTSNRSP-------NSSGYIKFRTRYRENLRYLRALTIIDPKTKPEDL 57

Query: 63  PSPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHAS 122
           P P  V  I+ T+ F KS   ++    RL +L P+ F+    PS++  VF FL  DL A+
Sbjct: 58  PLPNDVDHIIDTLTFLKSHSFSDADIPRLKFLTPELFTTAVVPSDVSAVFRFLADDLAAT 117

Query: 123 VEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKKLNVPSTLNARLLNTRVERLRETL 182
             E R LI+ CP++L S+V+ CL+PTL +L ++GV+ LN P+T NA LLNTRV++L   +
Sbjct: 118 KSESRDLILRCPKLLFSHVDLCLRPTLQFLRQVGVQGLNRPTTRNAHLLNTRVDKLHAKV 177

Query: 183 RFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFS 242
            FL+ +G +  EA   CAR+PAIFGY++E++L  KF +L  EMER LE+LK FPQYFGFS
Sbjct: 178 EFLQELGFSYEEAVRACARLPAIFGYDVENNLWPKFVYLVKEMERDLEDLKRFPQYFGFS 237

Query: 243 LGKRIAPRHWHLKQRNVRIKLNKMLLWSDNRFYTKWK 279
           L +RI PRH HLK+R VRI LN+ML+W+D +FY KWK
Sbjct: 238 LKERIVPRHLHLKKRGVRIPLNRMLMWADQKFYAKWK 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507997|ref|XP_003624287.1| hypothetical protein MTR_7g081270 [Medicago truncatula] gi|124359483|gb|ABN05921.1| Mitochodrial transcription termination factor-related [Medicago truncatula] gi|355499302|gb|AES80505.1| hypothetical protein MTR_7g081270 [Medicago truncatula]

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 128/249 (51%), Positives = 175/249 (70%), Gaps = 2/249 (0%)

Query: 33  YLKFKTSHRENLRYLRAIGVIDPSTKPHKLPSPEVVSQILSTIDFFKSKGLTNGHFSRLA 92
           Y+KF+T++ ENL YL+A+ +I+P+TKP+ LP P+ ++ IL+ I F KS   T     RL 
Sbjct: 36  YIKFRTTYNENLHYLKALTIINPNTKPNNLPHPDTINHILTIITFLKSHSFTEADIPRLV 95

Query: 93  YLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYL 152
           +  P  F+ +  P+ + PVF FL +DL ASVE+  GLI+ CP +L ++V + LKPTL +L
Sbjct: 96  HHSPHLFTTSISPTSLSPVFTFLASDLLASVEDSHGLILRCPNLLFTDVNHILKPTLHFL 155

Query: 153 -TKLGVKKLNVPSTLNARLLNTRVERLRETLRFLRS-IGLNRREAAEFCARMPAIFGYNI 210
             ++GV  LN P+  NA LLNTRVE++R  +RFL   +G    EA   CAR+PAI GY++
Sbjct: 156 REEVGVSNLNRPTNRNAHLLNTRVEKMRMRVRFLEEVVGFTYEEARNVCARLPAILGYDV 215

Query: 211 EHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNVRIKLNKMLLWS 270
           E++L  KF +L  EMER +EELK+FPQ+FGFSL KRI PRH HLK+R VRI LN+ML+W 
Sbjct: 216 ENNLWPKFVYLVKEMEREVEELKKFPQFFGFSLDKRIVPRHLHLKERGVRIPLNRMLMWG 275

Query: 271 DNRFYTKWK 279
           D +FY KWK
Sbjct: 276 DEKFYAKWK 284

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530561|ref|XP_003533849.1| PREDICTED: uncharacterized protein LOC100788221 [Glycine max]

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/282 (35%), Positives = 150/282 (53%), Gaps = 19/282 (6%)

Query: 10  VSSYSSDKSSNP---PSFSSS-------QNPPLYL----KFKTSHRENLRYLRAIGVIDP 55
           + + SSDK S+P   PS   S       QN PLY     K     +E +  L  +GV D 
Sbjct: 14  LCTISSDKPSSPLRSPSIHVSPKPKSLLQNHPLYTPTHTKLSLEFKEKILCLEVMGV-DA 72

Query: 56  STKPHKLPS--PEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFD 113
                + P      +  I S I F  SKGL      R+  +CP+  + +   +++ PVFD
Sbjct: 73  GKALSQNPDLRTATMESIHSIISFLLSKGLQEKDLPRIFGMCPKILTSDIK-TDLNPVFD 131

Query: 114 FLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKKLNVPSTLNARLLNT 173
           F++++L       R ++  CP++L+S+V+  L+P L YL +LG K L   +  ++ LL +
Sbjct: 132 FILSELKVPENSFRRVVNKCPRLLTSSVKDQLRPCLVYLRRLGFKDLGALAYQDSVLLVS 191

Query: 174 RVER-LRETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEEL 232
            VE  L   L+FL ++GL++ E      R PA+  ++IE++ + K+EF A EM R LEEL
Sbjct: 192 NVENTLIPKLKFLETLGLSKDEVRSMVLRCPALLTFSIENNFQPKYEFFAGEMGRKLEEL 251

Query: 233 KEFPQYFGFSLGKRIAPRHWHLKQRNVRIKLNKMLLWSDNRF 274
           KEFPQYF FSL  RI PRH  + Q  + + L  ML  +D  F
Sbjct: 252 KEFPQYFAFSLENRIKPRHMEVVQSGIALALPVMLKSTDEEF 293

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
TAIR|locus:2087926	274	AT3G18870 "AT3G18870" [Arabido	0.881	0.897	0.592	6.8e-79
TAIR|locus:2062328	303	AT2G34620 "AT2G34620" [Arabido	0.738	0.679	0.408	2e-33
TAIR|locus:2056745	283	EMB93 "EMBRYO DEFECTIVE 93" [A	0.838	0.826	0.353	1.6e-29
TAIR|locus:2039240	333	EMB3114 "AT2G36000" [Arabidops	0.831	0.696	0.315	1.8e-23
TAIR|locus:2207420	591	AT1G78930 "AT1G78930" [Arabido	0.695	0.328	0.315	5.9e-19
TAIR|locus:2049329	641	EMB2219 "embryo defective 2219	0.849	0.369	0.242	2.7e-16
TAIR|locus:2162092	496	AT5G55580 "AT5G55580" [Arabido	0.853	0.479	0.241	2.1e-13
TAIR|locus:505006461	493	MDA1 "AT4G14605" [Arabidopsis	0.688	0.389	0.262	1.5e-11
TAIR|locus:2051814	507	AT2G44020 "AT2G44020" [Arabido	0.842	0.463	0.277	1.1e-09
TAIR|locus:2153433	500	PTAC15 "AT5G54180" [Arabidopsi	0.727	0.406	0.257	8.1e-09

TAIR|locus:2087926 AT3G18870 "AT3G18870" [Arabidopsis thaliana (taxid:3702)]

 Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
 Identities = 147/248 (59%), Positives = 189/248 (76%)

Query:    32 LYLKFKTSHRENLRYLRAIGVIDPSTKPHKLPSPEVVSQILSTIDFFKSKGLTNGHFSRL 91
             LYLKF+TSHRENLR+L ++G++ P   P   P    +S ILS ++  KSKG+++  F RL
Sbjct:    28 LYLKFQTSHRENLRHLSSLGIV-PQN-PRLAPPANDLSVILSAVNLLKSKGISDEDFPRL 85

Query:    92 AYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDY 151
              +LCPQ FS  FD S+++PVFDFL  +L AS EE RGLI+ CP +L S+VEYCL+PTL Y
Sbjct:    86 VFLCPQLFSPTFDISKLDPVFDFLTGELGASAEESRGLIVNCPNILFSDVEYCLRPTLVY 145

Query:   152 LTKLGVKKLNVPSTLNARLLNTRVERLRETLRFLRSIGLNRREAAEFCARMPAIFGYNIE 211
             L +LGV+ LN  S  NA +LNTRVE+LR  +RFL+SIG    EAA  C R+PAIFGY++E
Sbjct:   146 LKELGVRNLNRASKTNAHVLNTRVEKLRAKMRFLKSIGFEHEEAARVCGRIPAIFGYSVE 205

Query:   212 HHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNVRIKLNKMLLWSD 271
              +L+ KFEFL  +MER LEELK+FPQYF FSLGKRI PRHWHLK++NVR+ L++ML+W D
Sbjct:   206 DNLRPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRPRHWHLKKKNVRVSLSRMLMWGD 265

Query:   272 NRFYTKWK 279
              +FY+KWK
Sbjct:   266 QKFYSKWK 273

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2062328 AT2G34620 "AT2G34620" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 85/208 (40%), Positives = 120/208 (57%)

Query:    68 VSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERR 127
             +  I S + F +SKG+      R+  +CP+  + +   +E+ PVF FL  DLH      R
Sbjct:    84 LDSIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVR-TELYPVFMFLSNDLHVPENAFR 142

Query:   128 GLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKKLNVPSTLNARLLNTRVER-LRETLRFLR 186
              +I  CP++L S+VE  LKP L YL +LG+K L   +  +  LL + VE  L   LRFL 
Sbjct:   143 RVIKKCPRLLISSVEDQLKPALFYLQRLGLKDLEALAYQDPILLVSSVEHTLIPKLRFLE 202

Query:   187 SIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKR 246
             SIG +R EA     R PA+F ++IE++ K K ++   E++  LE LKEFPQYF FSL KR
Sbjct:   203 SIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEKR 262

Query:   247 IAPRHWHLKQRNVRIKLNKMLLWSDNRF 274
             I PRH    +R + + L+ ML  +D  F
Sbjct:   263 IKPRHLESMERGLELPLSLMLKSTDEEF 290

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

TAIR|locus:2056745 EMB93 "EMBRYO DEFECTIVE 93" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 86/243 (35%), Positives = 129/243 (53%)

Query:    41 RENLRYLRAIGVIDPSTKPHKLPS--PEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQF 98
             RE L YL+ + V DP       PS     +S ++S      S GL+     R+  + P  
Sbjct:    33 REKLIYLQDLNV-DPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDL 91

Query:    99 FSINFDP-SEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGV 157
               +  DP SEI PV  FL  ++  S ++    I  CP++L S+V+Y L+P L +L  LG 
Sbjct:    92 --LTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGF 149

Query:   158 KKLNVPSTLNARLLNTRVER-LRETLRFLRS-IGLNRREAAEFCARMPAIFGYNIEHHLK 215
                +  ++ N  LL + VER L   + +L   +G  R E A+   R PA+  Y+++++L 
Sbjct:   150 VGRDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLV 209

Query:   216 IKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNVRIKLNKMLLWSDNRFY 275
              K EF   EM   ++ELK FPQYF FSL ++I PRH  LK+  + + L++ML  SD +F 
Sbjct:   210 PKVEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQF- 268

Query:   276 TKW 278
               W
Sbjct:   269 NHW 271

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0071452 "cellular response to singlet oxygen" evidence=IGI

TAIR|locus:2039240 EMB3114 "AT2G36000" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 77/244 (31%), Positives = 129/244 (52%)

Query:    37 KTSHRENLRYLRAIGVIDPSTKPHKLPS--PEVVSQILSTIDFFKSKGL--TNGHFSRLA 92
             ++S  E L YL ++G ID  T  ++ P      +S + S +D+  +  +  T   F RL 
Sbjct:    70 ESSIHEKLIYLDSLG-IDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRRLV 128

Query:    93 YLCPQFFSINFDPSEIEPVFDFLITDLHA-SVEERRGLIIGCPQMLSSNVEYCLKPTLDY 151
              +CP+  +       I PV  FL+ ++   S+ + R  +   P++L+ +V++ L+PTL +
Sbjct:   129 SMCPELLTSPLTSHTI-PVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLYF 187

Query:   152 LTKLGVKKLNVPSTLNARLLNTRVE-RLRETLRFLRSIGLNRREAAEFCARMPAIFGYNI 210
             L ++G+  L+ P   +  LL+  V+ +L   + +   +G +RR A     R P +F Y+I
Sbjct:   188 LQRIGI--LD-PHK-HTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSI 243

Query:   211 EHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNVRIKLNKMLLWS 270
               + + K ++L VEM R + E+ EFPQYF FSL  RI PRH     + VR  L  ML  +
Sbjct:   244 AENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKTN 303

Query:   271 DNRF 274
             +  F
Sbjct:   304 EAGF 307

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2207420 AT1G78930 "AT1G78930" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 5.9e-19, P = 5.9e-19
 Identities = 63/200 (31%), Positives = 98/200 (49%)

Query:    78 FKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQML 137
             F   G+ +    ++    PQ       P E   V  FL  DL    E    ++  CP++ 
Sbjct:   378 FDKLGVRDKRMGKVIPKMPQLLLCK--PQEFLKVVCFL-EDLGFQKEIVGQILCRCPEIF 434

Query:   138 SSNVEYCLKPTLDYLTKLGVKKLNVPSTLNAR---LLNTRVERLRETLRFLRSIGLNRRE 194
               ++E  L+  L +LT+ GV   + P  +      L+    + +   L++L  IG++ RE
Sbjct:   435 GCSIEKTLQKKLIFLTRFGVSTTHFPRIIKKYPEFLIYDADKTVLPRLKYLMEIGISERE 494

Query:   195 AAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHL 254
              A    +   I GY+I+  L+ KFEFL   ME+ + E+ E+P+YF +SL KRI PR   L
Sbjct:   495 IAFMIRKFSPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYSLEKRIKPRFRVL 554

Query:   255 KQRNVRIKLNKMLLWSDNRF 274
             K RN+   L +ML  +D  F
Sbjct:   555 KGRNIECTLQEMLGKNDEEF 574

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2049329 EMB2219 "embryo defective 2219" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.7e-16, P = 2.7e-16
 Identities = 61/252 (24%), Positives = 122/252 (48%)

Query:    33 YLKFKTSHRENLRYLRAIGVIDPST------KPHKLPSPEVVSQILSTIDFFKSKGLTNG 86
             +  F+   ++ + YL+  G+           KPH L    +  +    + +F   G+   
Sbjct:   346 FFSFQVMEKK-INYLKEFGLSTEEVGRLLAYKPH-LMGCSIEERWKPLVKYFYYLGIPKE 403

Query:    87 HFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLK 146
                R+  + P  + I+ + + I P   FL  ++    E    +++  P +L++++   ++
Sbjct:   404 GMKRILVVKPILYCIDLEKT-IAPKVRFL-QEMGIPNEAIGNMLVKFPSLLTNSLYKKIR 461

Query:   147 PTLDYL-TKLGVKKLNVPSTL--NARLLNTRV-ERLRETLRFLRSIGLNRREAAEFCARM 202
             P + +L T+ GV + ++   +  +  LL   +  +L   +R+  S+G+   +  E  A  
Sbjct:   462 PVVIFLLTRAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADF 521

Query:   203 PAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNVRIK 262
             P +  YN+++ L+ K+ +L   M R L++L EFP++F +SL +RI PRH  + +  V  K
Sbjct:   522 PMLLRYNVDN-LRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFK 580

Query:   263 LNKMLLWSDNRF 274
             L  ML  +D  F
Sbjct:   581 LRYMLACTDEEF 592

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2162092 AT5G55580 "AT5G55580" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 61/253 (24%), Positives = 117/253 (46%)

Query:    39 SHRENLRYLRAIGVIDPSTKPHKLPSPEVV-----SQILSTIDFFKSKGLTNGHFSRLAY 93
             S +E L YL ++GV     K   L  P+++     + + + I F    G+ N    ++  
Sbjct:   218 SAQERLDYLLSVGVKHRDIKRMLLRQPQILQYTVENNLKAHISFLMGLGIPNSKIGQIVA 277

Query:    94 LCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLT 153
               P  FS + + S + P   +LI ++     +   ++   PQ+L   ++        +L+
Sbjct:   278 ATPSLFSYSVENS-LRPTIRYLIEEVGIKETDVGKVVQLSPQILVQRLDITWNTRYMFLS 336

Query:   154 K-LGVKKLNVPSTL--NARLLNTRVER-LRETLRFLRSIGLNRREAAEFCARMPAIFGYN 209
             K LG  + +V   +  + +LL+  ++      + FLRSIG+   +  +    +  +   +
Sbjct:   337 KELGAPRDSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLTQVLSLS 396

Query:   210 IEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQ-RNVR---IKLNK 265
             +E +LK K+ +L  E+   +  L ++P Y   SL +RI PRH  L + + VR     L+ 
Sbjct:   397 LEDNLKPKYMYLVNELNNEVHILTKYPMYLSLSLDQRIRPRHRFLVELKKVRKGPFPLSS 456

Query:   266 MLLWSDNRFYTKW 278
              L+ +D  F  +W
Sbjct:   457 -LVPNDESFCQQW 468

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:505006461 MDA1 "AT4G14605" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 54/206 (26%), Positives = 104/206 (50%)

Query:    74 TIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLI-TDLHASVEERRGLIIG 132
             T+ F ++ G+    ++++    P    + +   ++    +FL  T L    EE+ G I+ 
Sbjct:   271 TMAFLETLGIDKNQWAKIISRFPAI--LTYSRQKLTSTVEFLSQTGL---TEEQIGRILT 325

Query:   133 -CPQMLSSNVEYCLKPTLDYLTKLGVKKLNVPSTLNA--RLLNTRVE-RLRETLRFLRSI 188
              CP ++S +VE  L+PT++Y   L V   +V   L+   +     +E  L+    F    
Sbjct:   326 RCPNIMSYSVEDKLRPTMEYFRSLNV---DVAVLLHRCPQTFGLSIESNLKPVTEFFLEK 382

Query:   189 GLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIA 248
             G    E     +R  A++ ++++ ++  K+++    M+    EL +FPQ+FG+SL +RI 
Sbjct:   383 GFGLDEIGIMISRYGALYTFSLKENVMPKWDYFQT-MDYPKSELVKFPQFFGYSLQERIK 441

Query:   249 PRHWHLKQRNVRIKLNKMLLWSDNRF 274
             PR+  +++  VR+ LN++L  S   F
Sbjct:   442 PRYELVQRSGVRLLLNQVLSLSGIEF 467

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2051814 AT2G44020 "AT2G44020" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 71/256 (27%), Positives = 115/256 (44%)

Query:    32 LYLKFKTSHRENLRYLRAIGV----IDPSTKPHK-LPSPEVVSQILSTIDFFKSKGLTNG 86
             L  K + +   ++ YL +IGV    I P    +  L    V + I   +D+  S GL   
Sbjct:   208 LGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYLLGMRVGTMIKPLVDYLISIGLPKK 267

Query:    87 HFSRLAYLCPQFFSINFDPSE-IEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCL 145
               +R+  L  + + + ++  E ++P  D LI+      E    LI   PQ+L   V+  +
Sbjct:   268 IVARM--LEKRSYIVGYNLEETVKPNVDCLIS-FGVKKELLPLLIAQYPQILGLPVKAKM 324

Query:   146 KPTLDYLTKLGVKKLNVPSTLNARLLNT--RVERLRET-----LRFLRSIGLNRREAAEF 198
               T  Y   L   KL +     AR++    ++  L++      + FL        + A+ 
Sbjct:   325 S-TQQYFFSL---KLKIDPEGFARVVEKMPQIVSLKQNVIMKPIEFLLGRAFQVEDIAKM 380

Query:   199 CARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRN 258
               R P I    +E  +K  + F   EM R ++EL E+P+YF +SL  RI PR+  L+ + 
Sbjct:   381 VVRCPQILCSRVEL-MKNSYYFYKTEMGRPMKELVEYPEYFTYSLESRIKPRYQKLQSKG 439

Query:   259 VRIKLNKMLLWSDNRF 274
             +R  LN  L  SD RF
Sbjct:   440 IRSSLNWFLNCSDQRF 455

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2153433 PTAC15 "AT5G54180" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 8.1e-09, P = 8.1e-09
 Identities = 54/210 (25%), Positives = 93/210 (44%)

Query:    68 VSQILSTIDFFKS-KGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEER 126
             V  +   ++F KS  GLT+    ++ ++ P   S + +  ++ P  +FL  +        
Sbjct:   283 VEHMNGQVEFLKSFAGLTSEQVFKIVHVFPNVISTSKE-RKLRPRIEFL-KECGFDSPGM 340

Query:   127 RGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVK-KLNVPSTLNARLLNTRVERLRETLRFL 185
                +   P +L+ + E  L   L +L K+G K +    +     +  T  + ++  +   
Sbjct:   341 FKFLSKAPLILALS-ENNLSHKLGFLVKIGYKHRTKELAFAMGAVTRTSSDNMQRVIGLY 399

Query:   186 RSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGK 245
              S GL+  +      + P +  YN    L+ K E+L   M R +EEL  FP + G+ L  
Sbjct:   400 LSYGLSFEDILAMSTKHPQVLQYNYTS-LEEKLEYLIEYMGREVEELLAFPAFLGYKLDS 458

Query:   246 RIAPRHWH-LKQRNVRIKLNKMLLWSDNRF 274
             RI  R+   LK R   + LNK+L  S  RF
Sbjct:   459 RIKHRYEEKLKSRGENMSLNKLLTVSAERF 488

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	279
pfam02536	345	pfam02536, mTERF, mTERF	3e-25
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	2e-15
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	7e-09

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score =  102 bits (255), Expect = 3e-25
 Identities = 69/246 (28%), Positives = 111/246 (45%), Gaps = 24/246 (9%)

Query: 43  NLRYLRAIGVIDPSTKPHKLPSPEVVSQIL----STIDFFKSKGLTNGHFSRLAY----- 93
           N+  LR +GV      P KL    ++S+        +     K +    F    +     
Sbjct: 108 NVSVLRELGV------PPKLLFSLLISRPRPVCGKEVFEESLKKVVEMGFDPTTFKRVIA 161

Query: 94  LCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLT 153
             P+    + D   I+P  +FL   L  SVE+   ++  CP++L S+ +  L+ T + L 
Sbjct: 162 KRPRLLLYSSD-KTIKPNVEFLK-SLGFSVEDVWAILKKCPELLGSSEKKKLQ-TQEILK 218

Query: 154 KLGVKKLNVPSTLNARLLNTRVERLRETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHH 213
             G+ +         + ++   +++   + FL  +G +R E A+   R P + G ++E  
Sbjct: 219 TCGLLEFLSVIKKMPQFVSYSEQKILNKIEFLLGLGFSREEIAKMVKRCPQLLGLSVEK- 277

Query: 214 LKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPR---HWHLKQRNVRIK--LNKMLL 268
           +K K EFL  EM   L+EL EFPQ FG+SL KRI PR      L  +   I   L+ ML 
Sbjct: 278 VKKKTEFLVKEMNWPLKELVEFPQVFGYSLEKRIKPRCNVVKALMSKGKSILPSLSSMLK 337

Query: 269 WSDNRF 274
            +D  F
Sbjct: 338 CTDEEF 343

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 67/246 (27%), Positives = 106/246 (43%), Gaps = 29/246 (11%)

Query: 46  YLRAIGVIDPSTKPHKLPSPE-----VVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFS 100
           YL +IGV      P     PE     V + I   +D+ +S GL     +R+    P    
Sbjct: 202 YLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYI-- 259

Query: 101 INFDPSE-IEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKK 159
           + FD  E ++P  + L+ +     E    +I   P +L  +    LK  L         K
Sbjct: 260 LGFDLEETVKPNVECLL-EFGVRKEALPSVIAQYPDILGLD----LKAKLAEQQYWLTSK 314

Query: 160 LNVPSTLNARLLNTRVERLRETL-----------RFLRSIGLNRREAAEFCARMPAIFGY 208
           L +      R+    +E+L + +            FLR  G + ++ A+   R P I   
Sbjct: 315 LKIDPEDFGRV----IEKLPQIVSLNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQILAL 370

Query: 209 NIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNVRIKLNKMLL 268
           N+E  +K   EF   EM+R L+EL EFP YF + L  RI PR+  + ++ ++  L   L 
Sbjct: 371 NLEI-MKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVAKKGIKCSLAWFLN 429

Query: 269 WSDNRF 274
            SD++F
Sbjct: 430 CSDDKF 435

Length = 487

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 55.9 bits (135), Expect = 7e-09
 Identities = 70/272 (25%), Positives = 111/272 (40%), Gaps = 33/272 (12%)

Query: 11  SSYSSDKSSNPPSFSSSQNPPLY---------LKFKTSHREN----LRYLRAIGVIDPST 57
           SS        P     S +P LY         L+ K     N    L +LR IG+     
Sbjct: 21  SSRPGRSQRAPLRAKQSSSPSLYERPSVTWGLLEMKKEKLVNREKVLDFLRGIGIDPDEL 80

Query: 58  KPHKLPSP-EVVSQILSTIDFFKSKGLTNGHFSR--LAYLCPQFFSINFDPSEIEPVFDF 114
              +LPS  +V+ +    ++F    GLT    +   L   C    S+      + PV D+
Sbjct: 81  DGLELPSTVDVMRE---RVEFLHKLGLTIEDINEYPLVLGC----SVK---KNMIPVLDY 130

Query: 115 LITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKKLNVPSTLN--ARLLN 172
           L   L  +      L+   PQ+L ++V   L P + YL  L VK+ ++P  L     LL 
Sbjct: 131 L-EKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLG 189

Query: 173 TRVERLRET-LRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFL---AVEMERS 228
            ++E    T + +L SIG+  R+      R P I G  + +++K K ++L    +     
Sbjct: 190 FKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAV 249

Query: 229 LEELKEFPQYFGFSLGKRIAPRHWHLKQRNVR 260
              L++ P   GF L + + P    L +  VR
Sbjct: 250 ARILEKRPYILGFDLEETVKPNVECLLEFGVR 281

Length = 487

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	99.95
KOG1267	413	consensus Mitochondrial transcription termination	99.85
KOG1267	413	consensus Mitochondrial transcription termination	99.74
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.31
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.23
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	92.25
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	85.7

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=9.3e-46  Score=353.72  Aligned_cols=239  Identities=23%  Similarity=0.407  Sum_probs=189.2

Q ss_pred             CCchhhHHHHHhCCCCCC--CCccccCC--Ccchh-hhHHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHH
Q 023626           38 TSHRENLRYLRAIGVIDP--STKPHKLP--SPEVV-SQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVF  112 (279)
Q Consensus        38 ~~~~~~l~~L~~~Gls~~--~~ii~~~P--l~~~~-~~l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v  112 (279)
                      .++.|+++||+++|+++.  .+++.++|  +..+. .++.++++||+++|++.++|++++.++|++|+++++ ++++|++
T Consensus       158 ~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve-~~i~P~v  236 (487)
T PLN03196        158 VDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVG-NNIKPKV  236 (487)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChh-hhHHHHH
Confidence            344555555555555433  24455555  44444 356666666666666666666666677777777776 6777777


Q ss_pred             HHHHHhcCCChHHHHHHHHhCCcccccChhhhhHhHHHHHHHhCCCCC--Cc----------------------------
Q 023626          113 DFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKKL--NV----------------------------  162 (279)
Q Consensus       113 ~fL~~~lGls~~~i~~ll~~~P~iL~~s~~~~l~~~i~~L~~lG~~~~--~~----------------------------  162 (279)
                      +||+ ++|++.++|.+++.++|++|+++++++++|++++|+++|++..  ..                            
T Consensus       237 ~fL~-~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~l  315 (487)
T PLN03196        237 DYLE-SLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKL  315 (487)
T ss_pred             HHHH-HcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhh
Confidence            7777 5777777777777777777777777777777777777777641  11                            


Q ss_pred             ---------chhcccccccccHHHHHHHHHHHHHccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHHhCCChHHHh
Q 023626          163 ---------PSTLNARLLNTRVERLRETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELK  233 (279)
Q Consensus       163 ---------li~~~P~ll~~s~~~l~~~v~~L~~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg~~~~~i~  233 (279)
                               ++.++|++++.+.++++++++||+++||+.+++..|+.++|++|++|. ++|++|++||.++||++.++|+
T Consensus       316 G~s~e~i~~~v~k~P~il~lSe~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~S~-~~l~~k~dFlvneMg~~~~~Iv  394 (487)
T PLN03196        316 KIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNL-EIMKPSLEFFKKEMKRPLKELV  394 (487)
T ss_pred             CCCHHHHHHHHHhcchhhcccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCceeeccH-HHHHHHHHHHHHHhCCCHHHHH
Confidence                     234567777777788999999999999999999999999999999998 7999999999999999999999


Q ss_pred             hCCceeecccCCchHHHHHHHHHCCCCCChhhhhccchhHHHHhhC
Q 023626          234 EFPQYFGFSLGKRIAPRHWHLKQRNVRIKLNKMLLWSDNRFYTKWK  279 (279)
Q Consensus       234 ~~P~~L~~sl~~ri~pR~~~L~~~G~~~~l~~~l~~s~~~F~~~~~  279 (279)
                      ++|.+|+||+|+||+|||++|+++|+++++.+++++||++|+++|.
T Consensus       395 ~fP~~LsySLEkRI~PR~~~L~~kGl~~sL~~~L~~sd~~F~~r~v  440 (487)
T PLN03196        395 EFPAYFTYGLESRIKPRYERVAKKGIKCSLAWFLNCSDDKFEQRMS  440 (487)
T ss_pred             hChHHhccChhhhhHHHHHHHHHcCCCCCHHHHhccCHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999984

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=2.3e-39  Score=298.72  Aligned_cols=234  Identities=34%  Similarity=0.532  Sum_probs=173.2

Q ss_pred             CCchhhHHHHHhCCCCCCC--CccccCC--CcchhhhHHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHH
Q 023626           38 TSHRENLRYLRAIGVIDPS--TKPHKLP--SPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFD  113 (279)
Q Consensus        38 ~~~~~~l~~L~~~Gls~~~--~ii~~~P--l~~~~~~l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~  113 (279)
                      .++.+++++|+++|+++..  +.+...|  .... +.+.+.++++.++|++++++++++.++|.++..+.+ ++++++++
T Consensus       103 ~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~-~~~~~~v~~l~~lG~~~~~~~~vi~~~P~~l~~~~~-~~~~~~v~  180 (345)
T PF02536_consen  103 ENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS-EKIKERVEFLKELGFDPEKIGRVIAKNPRLLLSDSE-SELKPKVE  180 (345)
T ss_dssp             HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS--HHHHCHHHHHCCCTSSHHHHCCCHHHHHHHHCGSCC-CCCHHHHH
T ss_pred             hhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch-hHHHHHHHHHHHhCCCchhhcccccccchhhccccH-HHHHHHHH
Confidence            3577889999999996431  3455556  2333 899999999999999999999999999988888877 79999999


Q ss_pred             HHHHhcCCChHHHHHHHHhCCcccccChhhhhHhHHHHHHHhCCCCCCcchhcccccccccHHHHHHHHHHHHHccCChH
Q 023626          114 FLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKKLNVPSTLNARLLNTRVERLRETLRFLRSIGLNRR  193 (279)
Q Consensus       114 fL~~~lGls~~~i~~ll~~~P~iL~~s~~~~l~~~i~~L~~lG~~~~~~li~~~P~ll~~s~~~l~~~v~~L~~~G~s~~  193 (279)
                      ||+ ++|++.+++.+++.++|++|+.+.++.+++...++...|..+. .++.++|.++..+.+++.++++||+++||+++
T Consensus       181 ~L~-~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~-~~i~~~p~il~~~~~~l~~~i~~L~~lG~s~~  258 (345)
T PF02536_consen  181 FLR-SLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEE-RVIKKFPQILSLSEEKLKPKIEFLQSLGFSEE  258 (345)
T ss_dssp             HHH-HCTT-GHHHHHHHHHTTTGGGCGCHC----------------------------THHHHHHHHHHHHHHTTT--HH
T ss_pred             HHH-hhcccchhhhHHhhcccceeccccccccccccccccccccccc-ccccccccccccchHhHHHHHHHHHHhcCcHH
Confidence            999 6999999999999999999999988777766666665666555 88889999999999999999999999999999


Q ss_pred             HHHHHHhcCCcccccChhhhHHHHHHHHHHHhCCChHHHhhCCceeecccCCchHHH---HHHHHHCC--CCCChhhhhc
Q 023626          194 EAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPR---HWHLKQRN--VRIKLNKMLL  268 (279)
Q Consensus       194 ~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg~~~~~i~~~P~~L~~sl~~ri~pR---~~~L~~~G--~~~~l~~~l~  268 (279)
                      ++++|+.++|++|++|. +++++|++||.++||++.++|+++|.+|+||+|+||+||   +++|+++|  .++++.+++.
T Consensus       259 ei~~mv~~~P~iL~~s~-e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~~~~~l~~~g~~~~~sl~~~l~  337 (345)
T PF02536_consen  259 EIAKMVRRFPQILSYSI-EKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYEVLKVLKSKGLIINPSLSSMLS  337 (345)
T ss_dssp             HHHHHHHHSGGGGGS-H-HHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHHHHHTT--TTTGGGGGS-HHHH
T ss_pred             HHHHHHHhCcchhhcch-hhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHHHHHHHHHCcCCCCCCHHHHhh
Confidence            99999999999999999 579999999999999999999999999999999999999   66688999  7899999999


Q ss_pred             cchhHHHH
Q 023626          269 WSDNRFYT  276 (279)
Q Consensus       269 ~s~~~F~~  276 (279)
                      +||++|++
T Consensus       338 ~s~~~F~~  345 (345)
T PF02536_consen  338 CSDEEFLK  345 (345)
T ss_dssp             HHHHHHT-
T ss_pred             ccHHHhcC
Confidence            99999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=1.4e-34  Score=276.73  Aligned_cols=216  Identities=21%  Similarity=0.429  Sum_probs=157.4

Q ss_pred             CchhhHHHHHhCCCCCCCCccccCC--Ccchh-hhHHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHH
Q 023626           39 SHRENLRYLRAIGVIDPSTKPHKLP--SPEVV-SQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFL  115 (279)
Q Consensus        39 ~~~~~l~~L~~~Gls~~~~ii~~~P--l~~~~-~~l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL  115 (279)
                      .++++++||+++|+++++  +.++|  +..++ +++.++++||+++|+++.+|++++.++|.+|.++++ +++.|+++||
T Consensus        91 ~~~~~l~~L~s~G~~~~~--i~~~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve-~~L~P~v~fL  167 (487)
T PLN03196         91 VMRERVEFLHKLGLTIED--INEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVV-VDLAPVVKYL  167 (487)
T ss_pred             HHHHHHHHHHHcCCChHH--hccCcHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHH-HHHHHHHHHH
Confidence            444667788888885433  23677  55555 677778888877888888888888888888877777 7777888888


Q ss_pred             HHhcCCChHHHHHHHHhCCcccccChhhhhHhHHHHHHHhCCCC--CCcchhcccccccccHHH-HHHHHHHHHHccCCh
Q 023626          116 ITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKK--LNVPSTLNARLLNTRVER-LRETLRFLRSIGLNR  192 (279)
Q Consensus       116 ~~~lGls~~~i~~ll~~~P~iL~~s~~~~l~~~i~~L~~lG~~~--~~~li~~~P~ll~~s~~~-l~~~v~~L~~~G~s~  192 (279)
                      + .+|++.++|.+++.++|++|++++++++.++++||+++|++.  ...++.++|++|+++.++ ++++++||.++|++.
T Consensus       168 ~-~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~  246 (487)
T PLN03196        168 Q-GLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPR  246 (487)
T ss_pred             H-HcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCH
Confidence            7 577777777777777777777777777777777777777764  446777777777777664 777777777777777


Q ss_pred             HHHHHHHhcCCcccccChhhhHHHHHHHHHHHhCCChHH----HhhCCceeecccCCchHHHHHHH-HHCCC
Q 023626          193 REAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEE----LKEFPQYFGFSLGKRIAPRHWHL-KQRNV  259 (279)
Q Consensus       193 ~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg~~~~~----i~~~P~~L~~sl~~ri~pR~~~L-~~~G~  259 (279)
                      +++++++.++|++|++|+|++++++++||.+ +|++.+.    |.++|.++++++++++.++.++| ++.|+
T Consensus       247 ~~I~~il~~~P~iL~~sle~~lkp~v~~L~e-lGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~  317 (487)
T PLN03196        247 LAVARILEKRPYILGFDLEETVKPNVECLLE-FGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKI  317 (487)
T ss_pred             HHHHHHHHhCCceeEcCHHHhHHHHHHHHHH-cCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCC
Confidence            7777777777777777776677777777773 6776554    34677777777777777777776 35565

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=99.95  E-value=3.4e-29  Score=230.99  Aligned_cols=212  Identities=27%  Similarity=0.498  Sum_probs=135.8

Q ss_pred             HHHHhCCCCCCC--CccccCC---CcchhhhHHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHHHHhc
Q 023626           45 RYLRAIGVIDPS--TKPHKLP---SPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDL  119 (279)
Q Consensus        45 ~~L~~~Gls~~~--~ii~~~P---l~~~~~~l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~~~l  119 (279)
                      ++|+++|+++++  ++++++|   +....+++.++++||++.|++..++++++.++|.++..+.+ +++.|.++||+ ++
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~-~~i~p~~~~L~-~~   79 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLE-KNIIPVFDFLK-SI   79 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--H-HHHHHHHHHHT-TT
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccch-hhHHHHHHHHH-HH
Confidence            355666665443  4555566   23333666666666666666666666666666666666655 56666666666 46


Q ss_pred             CCChHHHHHHHHhCCcccccChhhhhHhHHHHHHHhCCCC------------------------------------CCcc
Q 023626          120 HASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKK------------------------------------LNVP  163 (279)
Q Consensus       120 Gls~~~i~~ll~~~P~iL~~s~~~~l~~~i~~L~~lG~~~------------------------------------~~~l  163 (279)
                      |++++++.+++.++|++|+.+.+.++.+++.+|+++|+++                                    ...+
T Consensus        80 ~~s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~~~v~~l~~lG~~~~~~~~v  159 (345)
T PF02536_consen   80 GLSDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSSEKIKERVEFLKELGFDPEKIGRV  159 (345)
T ss_dssp             SS-HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS-HHHHCHHHHHCCCTSSHHHHCCC
T ss_pred             cCCHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccchhHHHHHHHHHHHhCCCchhhccc
Confidence            6666666666666666666555555666666666666643                                    2345


Q ss_pred             hhccccc-ccccHHHHHHHHHHHHHccCChHHHHHHHhcCCcccccChhh------------------------------
Q 023626          164 STLNARL-LNTRVERLRETLRFLRSIGLNRREAAEFCARMPAIFGYNIEH------------------------------  212 (279)
Q Consensus       164 i~~~P~l-l~~s~~~l~~~v~~L~~~G~s~~~v~~~l~~~P~iL~~s~e~------------------------------  212 (279)
                      +.++|.+ +..+.+.++++++||+++|++.+++.+++.++|.++..|.++                              
T Consensus       160 i~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~  239 (345)
T PF02536_consen  160 IAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLS  239 (345)
T ss_dssp             HHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------THH
T ss_pred             ccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceecccccccccccccccccccccccccccccccccccc
Confidence            6788854 445556799999999999999999999999999999999854                              


Q ss_pred             --hHHHHHHHHHHHhCCChHHH----hhCCceeecccCCchHHHHHHHH-HCCCC
Q 023626          213 --HLKIKFEFLAVEMERSLEEL----KEFPQYFGFSLGKRIAPRHWHLK-QRNVR  260 (279)
Q Consensus       213 --~i~~k~~fL~~~mg~~~~~i----~~~P~~L~~sl~~ri~pR~~~L~-~~G~~  260 (279)
                        +++++++||.+ +|++.++|    .++|.+|++|.+ +++++++||. ++|++
T Consensus       240 ~~~l~~~i~~L~~-lG~s~~ei~~mv~~~P~iL~~s~e-~l~~k~~fl~~~m~~~  292 (345)
T PF02536_consen  240 EEKLKPKIEFLQS-LGFSEEEIAKMVRRFPQILSYSIE-KLKPKFEFLVKEMGLP  292 (345)
T ss_dssp             HHHHHHHHHHHHT-TT--HHHHHHHHHHSGGGGGS-HH-HHHHHHHHHHHCCT--
T ss_pred             hHhHHHHHHHHHH-hcCcHHHHHHHHHhCcchhhcchh-hhhHHHHHHHHHhCcC
Confidence              58999999997 99997775    689999999999 6999999986 47773

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.85  E-value=3e-21  Score=182.49  Aligned_cols=181  Identities=30%  Similarity=0.486  Sum_probs=152.4

Q ss_pred             hHHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHHHHhcCCChHHHHHHHHhCCcccccChhhhhHhHH
Q 023626           70 QILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTL  149 (279)
Q Consensus        70 ~l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~~~lGls~~~i~~ll~~~P~iL~~s~~~~l~~~i  149 (279)
                      .+...+.++..+|+.+..  +++.++|.++.++.+ +.+++++++|+ .+|++.++|..++.++|++|+++.+ ++..++
T Consensus       231 ~l~~~~~~i~~~g~~p~~--~~~v~~~~~~~~~~~-~~i~~kv~~l~-~~Gf~~~di~~~~~k~P~~l~~s~~-~~~~~~  305 (413)
T KOG1267|consen  231 KLKARLPFLLTLGFDPKT--REFVKAPILLSYSSE-KTLEPKVEVLK-SLGFSREEIWKMVKKCPQILGYSVK-KNLKTT  305 (413)
T ss_pred             hhhhhhhhHHHhccCCch--hHHHhhhhhhccccc-ccHHHHHHHHH-HcCCCHHHHHHHHHhCchheEeehh-hhhHHH
Confidence            333344444444444333  555556666666788 89999999999 6999999999999999999999966 477777


Q ss_pred             HHHHHhCCCCCCcchhcccccccccHHHHHHHHHHHHHccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHHhCCCh
Q 023626          150 DYLTKLGVKKLNVPSTLNARLLNTRVERLRETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSL  229 (279)
Q Consensus       150 ~~L~~lG~~~~~~li~~~P~ll~~s~~~l~~~v~~L~~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg~~~  229 (279)
                      +++.+.  .+.   +.++|+++..+...+.++++|+..+|++..|+..++.++|+++.+|+|+.++.+.+|+.+.|+++.
T Consensus       306 ~~~~~~--~~~---~~k~p~~l~~s~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~~~~~~~~p~  380 (413)
T KOG1267|consen  306 EYLLKN--PKH---ILKFPQLLRSSEDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYEYLLKGLLRPL  380 (413)
T ss_pred             HHHHhc--chh---hhhhhhhhhccchhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHHHHHHHcCchH
Confidence            777776  222   889999999999999999999999999999999999999999999995599999999999999999


Q ss_pred             HHHhhCCceeecccCCchHHHHHHHHHCCCC
Q 023626          230 EELKEFPQYFGFSLGKRIAPRHWHLKQRNVR  260 (279)
Q Consensus       230 ~~i~~~P~~L~~sl~~ri~pR~~~L~~~G~~  260 (279)
                      +.++.+|.+++|++++|+.||+......|.+
T Consensus       381 ~~~~~~p~~~~y~le~ri~pr~~~~~~~~~~  411 (413)
T KOG1267|consen  381 SALVSFPAFFGYSLEKRIRPRFNVIKKLGVK  411 (413)
T ss_pred             HHHhccchhhccchhhcchhHHHHHHHHhcc
Confidence            9999999999999999999999998877653

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.74  E-value=1.9e-17  Score=156.64  Aligned_cols=181  Identities=20%  Similarity=0.310  Sum_probs=130.9

Q ss_pred             CCCchhhHHHHHhCCCCCC--CCccccCC---CcchhhhHHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhH
Q 023626           37 KTSHRENLRYLRAIGVIDP--STKPHKLP---SPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPV  111 (279)
Q Consensus        37 ~~~~~~~l~~L~~~Gls~~--~~ii~~~P---l~~~~~~l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~  111 (279)
                      ..+.+..+++|++.|++++  ++++...|   ...+...+.++..+|...|++..++.+++...|.+|..+.+ .++.+.
T Consensus        88 ~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~-~~~~~~  166 (413)
T KOG1267|consen   88 SVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKG-ESLSTF  166 (413)
T ss_pred             ccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcC-CchhhH
Confidence            3455567999999999766  46788888   35556888888889999999999999999999999998877 789999


Q ss_pred             HHHHHHhcC--CChHHHHHHHHhCCcccccChhhhhHhHHHHHHHhCCC-------------------------------
Q 023626          112 FDFLITDLH--ASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVK-------------------------------  158 (279)
Q Consensus       112 v~fL~~~lG--ls~~~i~~ll~~~P~iL~~s~~~~l~~~i~~L~~lG~~-------------------------------  158 (279)
                      ++|++ .++  .....+.+++...|......  ..+. ++++++++|..                               
T Consensus       167 ~~~l~-~~~~~~~~s~~~~~~~~~~~~~~~~--~~v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~~l~~~~~~i~~~  242 (413)
T KOG1267|consen  167 IEFLK-SIPPELLSSVVERLLTPVPSFLLNE--NSVE-RLDIRRELGVKPRLLKSLLESQPRPVLLYLKLKARLPFLLTL  242 (413)
T ss_pred             HHHhh-ccchhhhhhHHHHhccccccccccc--cccc-cchhhHHhCCCHHHHHHHHhcCccceeeehhhhhhhhhHHHh
Confidence            99998 463  55555555555555322221  1233 55555555554                               


Q ss_pred             ---CCCcchhccccccccc-HHHHHHHHHHHHHccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHH
Q 023626          159 ---KLNVPSTLNARLLNTR-VERLRETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAV  223 (279)
Q Consensus       159 ---~~~~li~~~P~ll~~s-~~~l~~~v~~L~~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~  223 (279)
                         ....++.+.|.++.++ .+.+++++++|+++||+.+|+++|+.++|++|+++. +++..+++|+.+
T Consensus       243 g~~p~~~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~-~~~~~~~~~~~~  310 (413)
T KOG1267|consen  243 GFDPKTREFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSV-KKNLKTTEYLLK  310 (413)
T ss_pred             ccCCchhHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeeh-hhhhHHHHHHHh
Confidence               2223334455555544 456999999999999999999999999999999998 554444444433

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.31  E-value=0.0002  Score=41.43  Aligned_cols=28  Identities=36%  Similarity=0.679  Sum_probs=14.4

Q ss_pred             HHHhCCcccccChhhhhHhHHHHHHHhCC
Q 023626          129 LIIGCPQMLSSNVEYCLKPTLDYLTKLGV  157 (279)
Q Consensus       129 ll~~~P~iL~~s~~~~l~~~i~~L~~lG~  157 (279)
                      ++.++|++|+.+ +++++++++||+++|+
T Consensus         3 ~~~~~P~il~~~-~~~l~~~~~~l~~~g~   30 (31)
T smart00733        3 ILKKFPQILGYS-EKKLKPKVEFLKELGF   30 (31)
T ss_pred             hhhhCcCccccc-HHHhhHHHHHHHHcCC
Confidence            344555555555 4445555555555554

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.23  E-value=0.00027  Score=40.87  Aligned_cols=30  Identities=40%  Similarity=0.650  Sum_probs=21.8

Q ss_pred             HHHhcCCcccccChhhhHHHHHHHHHHHhCCC
Q 023626          197 EFCARMPAIFGYNIEHHLKIKFEFLAVEMERS  228 (279)
Q Consensus       197 ~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg~~  228 (279)
                      +++.++|.+++++. ++++++++||. ++|++
T Consensus         2 ~~~~~~P~il~~~~-~~l~~~~~~l~-~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYSE-KKLKPKVEFLK-ELGFS   31 (31)
T ss_pred             chhhhCcCcccccH-HHhhHHHHHHH-HcCCC
Confidence            35677888888884 68888888887 57753

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=92.25  E-value=2.1  Score=35.65  Aligned_cols=142  Identities=15%  Similarity=0.186  Sum_probs=74.4

Q ss_pred             hHHHHHhCCCCCCCCccccCC---CcchhhhH--HHHHHHHhhCCCChhHHHHHHhhCCc----cccccccCCchhhHHH
Q 023626           43 NLRYLRAIGVIDPSTKPHKLP---SPEVVSQI--LSTIDFFKSKGLTNGHFSRLAYLCPQ----FFSINFDPSEIEPVFD  113 (279)
Q Consensus        43 ~l~~L~~~Gls~~~~ii~~~P---l~~~~~~l--~~~i~~L~~~G~s~~~i~~li~~~P~----lL~~~~e~~~l~~~v~  113 (279)
                      .+.|....|+=.+..   +.+   ..++.+.+  ...+..|+++|++-++|..++.....    ++....+  .+...++
T Consensus        17 tLRyYe~~GLl~p~~---r~~~gyR~Y~~~dl~rL~~I~~lr~~G~sL~eI~~ll~~~~~~~~~~L~~~~~--~l~~ei~   91 (172)
T cd04790          17 TLLYYERIGLLSPSA---RSESNYRLYGERDLERLEQICAYRSAGVSLEDIRSLLQQPGDDATDVLRRRLA--ELNREIQ   91 (172)
T ss_pred             HHHHHHHCCCCCCCc---cCCCCCccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChhHHHHHHHHHH--HHHHHHH
Confidence            477888888832221   222   34444332  26677889999999999999876543    1111111  3333333


Q ss_pred             HHHHhcCCChHHHHHHHHhCCcccccChhhhhHhHHHHHHHhCCCCCCcchhcccccccccHHHHHHHHHHHHHccCChH
Q 023626          114 FLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKKLNVPSTLNARLLNTRVERLRETLRFLRSIGLNRR  193 (279)
Q Consensus       114 fL~~~lGls~~~i~~ll~~~P~iL~~s~~~~l~~~i~~L~~lG~~~~~~li~~~P~ll~~s~~~l~~~v~~L~~~G~s~~  193 (279)
                      -|+.    ....+..++...+..-.... -+....++.++.+|+++...- ..+-   .+....=....+||.++|++++
T Consensus        92 ~L~~----~~~~l~~ll~~~~~~~~~~~-V~~~~w~~l~~~~g~~~~~m~-~wh~---~fe~~~p~~h~~~l~~~g~~~~  162 (172)
T cd04790          92 RLRQ----QQRAIATLLKQPTLLKEQRL-VTKEKWVAILKAAGMDEADMR-RWHI---EFEKMEPEAHQEFLQSLGIPED  162 (172)
T ss_pred             HHHH----HHHHHHHHHHHHhhcccccc-CCHHHHHHHHHHcCCChHHHH-HHHH---HHHHhCcHHHHHHHHHcCCCHH
Confidence            3331    23444444443333322221 123556677777887653200 0000   0000112456789999999999


Q ss_pred             HHHHH
Q 023626          194 EAAEF  198 (279)
Q Consensus       194 ~v~~~  198 (279)
                      ++..+
T Consensus       163 ~~~~i  167 (172)
T cd04790         163 EIERI  167 (172)
T ss_pred             HHHHH
Confidence            88654

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=85.70  E-value=0.6  Score=43.19  Aligned_cols=177  Identities=20%  Similarity=0.231  Sum_probs=95.4

Q ss_pred             hhHHHHHHHHh-hCCCChhHHHHHHhhCCcccccccc--CCchhhHHHHHHHhcCCChHHHHHHH---------------
Q 023626           69 SQILSTIDFFK-SKGLTNGHFSRLAYLCPQFFSINFD--PSEIEPVFDFLITDLHASVEERRGLI---------------  130 (279)
Q Consensus        69 ~~l~~~i~~L~-~~G~s~~~i~~li~~~P~lL~~~~e--~~~l~~~v~fL~~~lGls~~~i~~ll---------------  130 (279)
                      .-...+++.++ ++|++++=...++.++|..|.....  ....-..+.+=- ++.++.-+-....               
T Consensus       117 rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd~-~LAvs~~E~~~~~~~~~~~~~~~~~~~~  195 (335)
T PF11955_consen  117 RLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRYLELVSWDP-ELAVSALEKRAEKEYREKREDGFDRPLA  195 (335)
T ss_pred             cccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecCCCCCEEEEeecCC-ccCcCccchhhhhccccccccccCCcee
Confidence            34456667666 6888887777888888887765320  011111222211 3333332222211               


Q ss_pred             --HhCCcccccChhhhhHhHHHHHHHhCCC----CCCcc-----------hhcccccccccHHH--HHHHHHHHH-HccC
Q 023626          131 --IGCPQMLSSNVEYCLKPTLDYLTKLGVK----KLNVP-----------STLNARLLNTRVER--LRETLRFLR-SIGL  190 (279)
Q Consensus       131 --~~~P~iL~~s~~~~l~~~i~~L~~lG~~----~~~~l-----------i~~~P~ll~~s~~~--l~~~v~~L~-~~G~  190 (279)
                        .++|.=  +.+++.....++-++++-+.    +...+           +.-.=.+|+..+++  ...++..|+ ++|+
T Consensus       196 Fp~~fp~G--~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~l  273 (335)
T PF11955_consen  196 FPVSFPKG--FRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGL  273 (335)
T ss_pred             eeecCCCC--ccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCC
Confidence              122322  22335566666666665542    11111           11111345555554  456677777 8899


Q ss_pred             ChHHHHHHHhcCCcccccChhhhHHHHHHHHHHHhCCChHHHhhCCceeecccCCchHHHHHHHHHCCC
Q 023626          191 NRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNV  259 (279)
Q Consensus       191 s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg~~~~~i~~~P~~L~~sl~~ri~pR~~~L~~~G~  259 (279)
                      + ..+..++.+||.|+..|.  +-+.-.=||.+....+ +-|-++|.+       .++-|+.-|...|.
T Consensus       274 p-~k~~~~l~rHPgIFYvS~--kg~~~TVfLrEAY~~~-~Liek~Pl~-------~~r~k~~~Lm~~~~  331 (335)
T PF11955_consen  274 P-QKFRRLLLRHPGIFYVSL--KGKRHTVFLREAYDGG-ELIEKHPLV-------VIREKFLELMQEGR  331 (335)
T ss_pred             c-HHHHHHHHhCCCeEEEec--cCCceEEEEeeccCCC-CCCCCCchH-------HHHHHHHHHHhhcc
Confidence            7 678899999999999986  4455555666543332 224566652       55666666665553

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	279
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-31
3mva_O	343	Transcription termination factor, mitochondrial; a	1e-25
3mva_O	343	Transcription termination factor, mitochondrial; a	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  116 bits (293), Expect = 2e-31
 Identities = 54/257 (21%), Positives = 92/257 (35%), Gaps = 24/257 (9%)

Query: 40  HRENLRYLRAIGVIDPSTKPHKLPSPEVVS-----QILSTIDFFKSKGLTNGHFSRLAYL 94
           H E L+ L  +GV     + H   +  ++       I   + F K  G+ +         
Sbjct: 5   HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTK 64

Query: 95  CPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTK 154
               FS   D   ++    +L    + S  +   ++   P +L+ +VE  L   L +  K
Sbjct: 65  NHAIFS--EDLENLKTRVAYLH-SKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQK 120

Query: 155 ---LGVKKLNVPSTLNARLLNTRVERLRETLRF-LRSIGLNRREAAEFCARMPAIFGYNI 210
              L VKK         RLL   +E ++E ++     +G    E      R+P +   N 
Sbjct: 121 ELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANK 180

Query: 211 EHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNVR---------I 261
              L   F+F+   M      + +FPQ F   L  ++  RH  L               I
Sbjct: 181 MK-LTETFDFVHNVMSIPHHIIVKFPQVFNTRL-FKVKERHLFLTYLGRAQYDPAKPNYI 238

Query: 262 KLNKMLLWSDNRFYTKW 278
            L+K++   D  F  + 
Sbjct: 239 SLDKLVSIPDEIFCEEI 255

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  102 bits (255), Expect = 1e-25
 Identities = 49/274 (17%), Positives = 92/274 (33%), Gaps = 27/274 (9%)

Query: 27  SQNPPLYLKFKTSHRENLRYLRAIGVIDP------STKPHKLPSPEVVSQILSTIDFFKS 80
           S+ P    +   +  +     R I   D          P           + + I F  S
Sbjct: 73  SRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYS 132

Query: 81  KGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLI-----TDLHASVEERRGLIIGCPQ 135
            GLT     RL    P+ FS        + + +FL         +   +  R +I   P 
Sbjct: 133 VGLTRKCLCRLLTNAPRTFS--NSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPF 190

Query: 136 MLSSNVEYCLKPTLDYLTKLGV----KKLNVPSTLNARLLNTRVERLRETLRFLR----S 187
           +L  + +  +K  +++L         + L +     A +L+   +  R +   ++    S
Sbjct: 191 ILIQSTKR-VKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFS 249

Query: 188 IGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRI 247
           +G    E  +F    P +     +     K + L +E   S+ ++ E P+    S+   +
Sbjct: 250 LGCTEEEVQKFVLSYPDVIFLAEKK-FNDKIDCL-MEENISISQIIENPRVLDSSI-STL 306

Query: 248 APRHWHLKQRNVRIKLN--KMLLWSDNRFYTKWK 279
             R   L      +      +L WS  R+  K K
Sbjct: 307 KSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLK 340

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 45.8 bits (108), Expect = 7e-06
 Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 9/121 (7%)

Query: 126 RRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKKLNVPSTLNARLLNTRVERLRETLRFL 185
                + C    S  ++   +  L  L  +GV            + +  +   ++   FL
Sbjct: 2   HMLFGVKCHNTDSEPLK--NEDLLKNLLTMGVDIDMA-RKRQPGVFHRMITNEQDLKMFL 58

Query: 186 RSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEE----LKEFPQYFGF 241
            S G ++   A   +R P       E +L  +++    ++  S  E    L+  P+ F  
Sbjct: 59  LSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLW-RKIVTSDLEIVNILERSPESFFR 116

Query: 242 S 242
           S
Sbjct: 117 S 117

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 3e-07
 Identities = 56/356 (15%), Positives = 100/356 (28%), Gaps = 101/356 (28%)

Query: 1   MLHSLHLPIVSSYSS--DKSSNPP-SFSSSQNPPLYLKFKTSHRENLRYLRAIGVIDPST 57
           ML  L   I  +++S  D SSN      S Q     L     +   L  L    V +   
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL--NVQNAKA 258

Query: 58  KPHKLPSPEVVSQILST------IDFFK------------SKGLTNGHFSRLAYLCPQFF 99
                 +  +  +IL T       DF              S  LT      +  L  ++ 
Sbjct: 259 ----WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP---DEVKSLLLKYL 311

Query: 100 SINFD--PSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGV 157
                  P E+       ++ +  S+ +          +    +   ++ +L+ L     
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 158 KKL-----------NVPSTL---------------------NARLLNTRVER-------- 177
           +K+           ++P+ L                        L+  + +         
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

Query: 178 -LRETLRFLRSIGLNRR------EAAEFCAR---MPAIFGY---NIEHHLKIKFEFLAVE 224
            L   ++      L+R           F +     P +  Y   +I HHLK         
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK--------N 483

Query: 225 MERSLEELKEFPQ-YFGFS-LGKRIAPRHWHLKQRNVRIKLNKMLLWSDNRFYTKW 278
           +E   E +  F   +  F  L ++I  RH           LN        +FY  +
Sbjct: 484 IEHP-ERMTLFRMVFLDFRFLEQKI--RHDSTAWNASGSILN---TLQQLKFYKPY 533

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	279
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	99.96
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.93
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.57
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.92
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	86.48
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	84.85
2xzm_O	153	RPS13E; ribosome, translation; 3.93A {Tetrahymena	80.82
2w84_A	70	Peroxisomal membrane protein PEX14; zellweger synd	80.45

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=1.5e-44  Score=321.76  Aligned_cols=231  Identities=22%  Similarity=0.327  Sum_probs=211.0

Q ss_pred             hhhHHHHHhCCCCCCCCccccCC------Ccchh-hhHHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHH
Q 023626           41 RENLRYLRAIGVIDPSTKPHKLP------SPEVV-SQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFD  113 (279)
Q Consensus        41 ~~~l~~L~~~Gls~~~~ii~~~P------l~~~~-~~l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~  113 (279)
                      .+.++||.++|++ .++ ++++|      +..+. +++.++++||+++|+++++|++++.++|.+|++++| + ++|+++
T Consensus         6 s~~l~~L~~lGv~-~~~-i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e-~-l~p~v~   81 (270)
T 3m66_A            6 SETLQKLVLLGVD-LSK-IEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLE-N-LKTRVA   81 (270)
T ss_dssp             HHHHHHHHHTTCC-HHH-HTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHH-H-HHHHHH
T ss_pred             hHHHHHHHHcCCC-HHH-HhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHH-H-HHHHHH
Confidence            4789999999994 544 35555      45665 799999999999999999999999999999999998 4 999999


Q ss_pred             HHHHhcCCChHHHHHHHHhCCcccccChhhhhHhHHHHH-HHhCCCC--CCcchhcccccccccHHHHHHHHHHHH-Hcc
Q 023626          114 FLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYL-TKLGVKK--LNVPSTLNARLLNTRVERLRETLRFLR-SIG  189 (279)
Q Consensus       114 fL~~~lGls~~~i~~ll~~~P~iL~~s~~~~l~~~i~~L-~~lG~~~--~~~li~~~P~ll~~s~~~l~~~v~~L~-~~G  189 (279)
                      ||+ ++|+++++|.+++.++|++|+.+++ +++++++|| +++|+++  ...++.++|++++.+.+.++++++++. ++|
T Consensus        82 ~L~-~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~~~~~v~~l~~~~G  159 (270)
T 3m66_A           82 YLH-SKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELG  159 (270)
T ss_dssp             HHH-HTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHHHHHHHHHHHHTSC
T ss_pred             HHH-HcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHHHHHHHHHHHHHcC
Confidence            999 6999999999999999999999988 499999999 5799985  457899999999999999999999875 999


Q ss_pred             CChHHHHHHHhcCCcccccChhhhHHHHHHHHHHHhCCChHHHhhCCceeecccCCchHHHHHHHHH---CCC------C
Q 023626          190 LNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQ---RNV------R  260 (279)
Q Consensus       190 ~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg~~~~~i~~~P~~L~~sl~~ri~pR~~~L~~---~G~------~  260 (279)
                      |+.+++.+|+.++|+++++|. ++|++|++|+.++||++.++|+++|.+|+||++ ||+|||.+|+.   +|+      .
T Consensus       160 ~s~~ei~~~v~~~P~il~~s~-~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~  237 (270)
T 3m66_A          160 FKHNEIQHMITRIPKMLTANK-MKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNY  237 (270)
T ss_dssp             CCHHHHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSC
T ss_pred             CCHHHHHHHHHhCChhheecH-HHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCC
Confidence            999999999999999999998 799999999998999999999999999999999 99999999875   555      2


Q ss_pred             CChhhhhccchhHHHHhhC
Q 023626          261 IKLNKMLLWSDNRFYTKWK  279 (279)
Q Consensus       261 ~~l~~~l~~s~~~F~~~~~  279 (279)
                      +++.+++.+||++|+++||
T Consensus       238 ~~L~~~l~~sd~~F~~~~~  256 (270)
T 3m66_A          238 ISLDKLVSIPDEIFCEEIA  256 (270)
T ss_dssp             CCHHHHHHSCHHHHHHHTT
T ss_pred             CCHHHHhcCCHHHHHHHHh
Confidence            6888899999999999986

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=4.4e-44  Score=329.09  Aligned_cols=241  Identities=17%  Similarity=0.289  Sum_probs=213.0

Q ss_pred             cccCCCCchhhHHHHHhCCCCCC--CCccccCC--CcchhhhHHHHHHHHhhCCCChhHHHHHHhhCCcc-ccccccCCc
Q 023626           33 YLKFKTSHRENLRYLRAIGVIDP--STKPHKLP--SPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQF-FSINFDPSE  107 (279)
Q Consensus        33 ~~~~~~~~~~~l~~L~~~Gls~~--~~ii~~~P--l~~~~~~l~~~i~~L~~~G~s~~~i~~li~~~P~l-L~~~~e~~~  107 (279)
                      .+..+++.+++++||.++|++++  .+++.++|  +..+.+++.++++||+++|++++++++++.++|++ ++.+.+ ++
T Consensus        44 ~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~-~~  122 (343)
T 3mva_O           44 FHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNN-LN  122 (343)
T ss_dssp             GGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCH-HH
T ss_pred             hccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChH-hh
Confidence            45567888999999999999765  47899999  77788999999999999999999999999999994 555432 38


Q ss_pred             hhhHHHHHHHhcCCChHHHHHHHHhCCcccccChhhhhHhHHHHHHHhCCC------C--CCcchhcccccccccHHHHH
Q 023626          108 IEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVK------K--LNVPSTLNARLLNTRVERLR  179 (279)
Q Consensus       108 l~~~v~fL~~~lGls~~~i~~ll~~~P~iL~~s~~~~l~~~i~~L~~lG~~------~--~~~li~~~P~ll~~s~~~l~  179 (279)
                      +.|+++||+ ++|++.++|.+++.++|++|+.++++. ++++++|+++|++      +  +..++.++|.+++++.++++
T Consensus       123 l~p~v~fL~-~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s~~~i~  200 (343)
T 3mva_O          123 LENNIKFLY-SVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVK  200 (343)
T ss_dssp             HHHHHHHHH-HTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSCHHHHH
T ss_pred             HHHHHHHHH-HhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCCHHHHH
Confidence            999999999 799999999999999999999998865 9999999987663      1  33567788888877766666


Q ss_pred             HHHHHHH-----------------------------------------HccCChHHHHHHHhcCCcccccChhhhHHHHH
Q 023626          180 ETLRFLR-----------------------------------------SIGLNRREAAEFCARMPAIFGYNIEHHLKIKF  218 (279)
Q Consensus       180 ~~v~~L~-----------------------------------------~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~  218 (279)
                      ++++||+                                         ++||+++|+.+|+.++|++|++|. ++|++|+
T Consensus       201 ~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~-~~l~~k~  279 (343)
T 3mva_O          201 ANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAE-KKFNDKI  279 (343)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCH-HHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccH-HHHHHHH
Confidence            6666665                                         479999999999999999999998 5899999


Q ss_pred             HHHHHHhCCChHHHhhCCceeecccCCchHHHHHHHHHCCCCCChh--hhhccchhHHHHhhC
Q 023626          219 EFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNVRIKLN--KMLLWSDNRFYTKWK  279 (279)
Q Consensus       219 ~fL~~~mg~~~~~i~~~P~~L~~sl~~ri~pR~~~L~~~G~~~~l~--~~l~~s~~~F~~~~~  279 (279)
                      +||.+ ||++.++|+++|.+|+||++ ||+|||++|+++|+++++.  +++++||++|+++|+
T Consensus       280 ~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~~L~~~g~~~~~~~~~~l~~s~~~F~~~~~  340 (343)
T 3mva_O          280 DCLME-ENISISQIIENPRVLDSSIS-TLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLK  340 (343)
T ss_dssp             HHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHHHHHTTTCCSSSSCGGGGGSCHHHHHHHHH
T ss_pred             HHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHHHHHHCCCCCCCCcchhhcCCHHHHHHHHh
Confidence            99999 99999999999999999999 9999999999999999888  999999999999985

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=4.5e-38  Score=286.62  Aligned_cols=201  Identities=17%  Similarity=0.267  Sum_probs=189.1

Q ss_pred             hhHHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHHHHhcCCChHHHHHHHHhCCcccccChhhhhHhH
Q 023626           69 SQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPT  148 (279)
Q Consensus        69 ~~l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~~~lGls~~~i~~ll~~~P~iL~~s~~~~l~~~  148 (279)
                      ..+...+..|.++||++++|+++++++|.++..     ++.+++.||. .+|++.++|.++|.++|++|+.+++ +|+++
T Consensus        44 ~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~-----~l~~~i~~L~-~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~  116 (335)
T 4fp9_B           44 LELERVMSSLLDMGFSNAHINELLSVRRGASLQ-----QLLDIISEFI-LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKR  116 (335)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH-----HHHHHHHHHH-HTTCCHHHHHHHHHHCGGGGGSCHH-HHHHH
T ss_pred             ccHHHHHHHHHHCCCCHHHHHHHHHhCcccchh-----HHHHHHHHHH-HcCCCHHHHHHHHHhChhhccCCHH-HHHHH
Confidence            568889999999999999999999999999754     6788999999 6999999999999999999999986 59999


Q ss_pred             HHHHHHhCCCCC--CcchhcccccccccHHHHHHHHHHHH-HccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHHh
Q 023626          149 LDYLTKLGVKKL--NVPSTLNARLLNTRVERLRETLRFLR-SIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEM  225 (279)
Q Consensus       149 i~~L~~lG~~~~--~~li~~~P~ll~~s~~~l~~~v~~L~-~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~m  225 (279)
                      ++||+++|++..  ..++.++|++++++.+.+..++.+|. ++||+.+++.+|+.++|+||++|. ++|++|++||.++|
T Consensus       117 l~fL~~lGl~~~~i~~ll~~~P~lL~~s~e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~-e~L~~K~efLv~~M  195 (335)
T 4fp9_B          117 SSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRM  195 (335)
T ss_dssp             HHHHHHTTCTTTTHHHHHHHCGGGGTSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTT
T ss_pred             HHHHHHcCCCHHHHHHHHHhCchhhccChHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH-HHHHHHHHHHHHHh
Confidence            999999999864  47899999999999999999999997 999999999999999999999997 69999999999999


Q ss_pred             CCChHHHhhCCceeecccCCchHHHHHHHHHCCC-------------CCChhhhhccchhHHHHhhC
Q 023626          226 ERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNV-------------RIKLNKMLLWSDNRFYTKWK  279 (279)
Q Consensus       226 g~~~~~i~~~P~~L~~sl~~ri~pR~~~L~~~G~-------------~~~l~~~l~~s~~~F~~~~~  279 (279)
                      |++.++|++ |.+|+||++ ||+|||.||+..|.             +++|.+++.+||++||+++|
T Consensus       196 gl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA  260 (335)
T 4fp9_B          196 GIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTA  260 (335)
T ss_dssp             CCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTS
T ss_pred             CCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHH
Confidence            999999998 999999999 99999999999988             35799999999999999987

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=5.9e-33  Score=255.02  Aligned_cols=216  Identities=17%  Similarity=0.247  Sum_probs=182.5

Q ss_pred             CCchhhHHHHHhCCCCCCCCccccCC--CcchhhhHHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHH
Q 023626           38 TSHRENLRYLRAIGVIDPSTKPHKLP--SPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFL  115 (279)
Q Consensus        38 ~~~~~~l~~L~~~Gls~~~~ii~~~P--l~~~~~~l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL  115 (279)
                      .+.+..++||.++|++ .+++++..|  +..+.++++++++||+++|+++++|++++.++|.+|.++.+  ++.|+++||
T Consensus        17 ~~~~~~v~~L~s~Gl~-~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~--~l~p~l~fL   93 (343)
T 3mva_O           17 LKNEDLLKNLLTMGVD-IDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE--NLSKRWDLW   93 (343)
T ss_dssp             ---CCHHHHHHHHTCC-HHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH--HHHHHHHHH
T ss_pred             cccHHHHHHHHHcCCC-HHHHHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH--HHHHHHHHH
Confidence            4456689999999994 667788889  66778899999999999999999999999999999999965  999999999


Q ss_pred             HHhcCCChHHHHHHHHhCCcc-cccChhhhhHhHHHHHHHhCCCC--CCcchhcccccccccHHHHHHHHHHHHHccCC-
Q 023626          116 ITDLHASVEERRGLIIGCPQM-LSSNVEYCLKPTLDYLTKLGVKK--LNVPSTLNARLLNTRVERLRETLRFLRSIGLN-  191 (279)
Q Consensus       116 ~~~lGls~~~i~~ll~~~P~i-L~~s~~~~l~~~i~~L~~lG~~~--~~~li~~~P~ll~~s~~~l~~~v~~L~~~G~s-  191 (279)
                      + ++|++++++.+++.++|++ ++.+.+++++|+++||+++|+++  ..+++.++|++++.+.+.+++++++|+++|++ 
T Consensus        94 ~-~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lgv~~  172 (343)
T 3mva_O           94 R-KIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSL  172 (343)
T ss_dssp             T-TTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHHHT
T ss_pred             H-HcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhCCCc
Confidence            9 7999999999999999995 55553358999999999999985  56899999999999999999999999987764 


Q ss_pred             -----hHHHHHHHhcCCcccccChhhhHHHHHHHHHHHh----------------------------------------C
Q 023626          192 -----RREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEM----------------------------------------E  226 (279)
Q Consensus       192 -----~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~m----------------------------------------g  226 (279)
                           .+.|.+++.++|.++++| +++++++++|+.+++                                        |
T Consensus       173 g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG  251 (343)
T 3mva_O          173 GHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLG  251 (343)
T ss_dssp             TCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTT
T ss_pred             CCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcC
Confidence                 778999999999999999 589999999999634                                        4


Q ss_pred             CChHHH----hhCCceeecccCCchHHHHHHHHHCCC
Q 023626          227 RSLEEL----KEFPQYFGFSLGKRIAPRHWHLKQRNV  259 (279)
Q Consensus       227 ~~~~~i----~~~P~~L~~sl~~ri~pR~~~L~~~G~  259 (279)
                      ++.+++    .++|.+|++|.+ +|+++++||..+|+
T Consensus       252 ~s~~ev~~~v~~~P~il~~s~~-~l~~k~~fl~~mg~  287 (343)
T 3mva_O          252 CTEEEVQKFVLSYPDVIFLAEK-KFNDKIDCLMEENI  287 (343)
T ss_dssp             CCHHHHHHHHHTCGGGGGSCHH-HHHHHHHHHHTTTC
T ss_pred             CCHHHHHHHHHhCCchhcccHH-HHHHHHHHHHHcCC
Confidence            444432    466777777776 47777777666666

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=99.96  E-value=3.5e-30  Score=229.02  Aligned_cols=202  Identities=15%  Similarity=0.255  Sum_probs=180.1

Q ss_pred             HHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHHHHhcCCChHHHHHHHHhCCcccccChhhhhHhHHH
Q 023626           71 ILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLD  150 (279)
Q Consensus        71 l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~~~lGls~~~i~~ll~~~P~iL~~s~~~~l~~~i~  150 (279)
                      -.+++++|.++|++.++|.+....+|.+|+++.+ +++.|+++||+ ++|++.++|++++.++|.+|+.++++ ++|+++
T Consensus         5 ~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~-~~l~~~l~fL~-~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~   81 (270)
T 3m66_A            5 HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFE-KDIKQMLLFLK-DVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVA   81 (270)
T ss_dssp             HHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHH-HHTHHHHHHHH-HHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHhhccchhhhhhccChh-hhHHHHHHHHH-HcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHH
Confidence            3588999999999999998888888888999998 89999999999 69999999999999999999999997 999999


Q ss_pred             HHHHhCCCC--CCcchhcccccccccHHHHHHHHHHHH-HccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHHhCC
Q 023626          151 YLTKLGVKK--LNVPSTLNARLLNTRVERLRETLRFLR-SIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMER  227 (279)
Q Consensus       151 ~L~~lG~~~--~~~li~~~P~ll~~s~~~l~~~v~~L~-~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg~  227 (279)
                      ||+++|+++  ..+++.++|++|+.+.++++++++||+ ++|++.+++.+++.++|+++++|. ++++++++|+..++|+
T Consensus        82 ~L~~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~-e~~~~~v~~l~~~~G~  160 (270)
T 3m66_A           82 YLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSL-EPVKENMKVYRLELGF  160 (270)
T ss_dssp             HHHHTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCS-HHHHHHHHHHHHTSCC
T ss_pred             HHHHcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeech-HHHHHHHHHHHHHcCC
Confidence            999999975  457899999999999999999999995 899999999999999999999999 6999999998778999


Q ss_pred             ChHHH----hhCCceeecccCCchHHHHHHHH-HCCCC----CChhhhhccchhHHHHh
Q 023626          228 SLEEL----KEFPQYFGFSLGKRIAPRHWHLK-QRNVR----IKLNKMLLWSDNRFYTK  277 (279)
Q Consensus       228 ~~~~i----~~~P~~L~~sl~~ri~pR~~~L~-~~G~~----~~l~~~l~~s~~~F~~~  277 (279)
                      +.++|    .++|.+|++|.+ +|+++++||. ++|++    .....++..|-++-..+
T Consensus       161 s~~ei~~~v~~~P~il~~s~~-~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sleri~pR  218 (270)
T 3m66_A          161 KHNEIQHMITRIPKMLTANKM-KLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKER  218 (270)
T ss_dssp             CHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHHHHHHH
T ss_pred             CHHHHHHHHHhCChhheecHH-HHHHHHHHHHHHhCCCHHHHHhCchHhhCCHHHHHHH
Confidence            98865    689999999997 9999999995 68984    23335566665544433

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.93  E-value=3.6e-26  Score=208.16  Aligned_cols=175  Identities=14%  Similarity=0.240  Sum_probs=158.2

Q ss_pred             chhhHHHHHhCCCCCC--CCccccCC-CcchhhhHHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHHH
Q 023626           40 HRENLRYLRAIGVIDP--STKPHKLP-SPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLI  116 (279)
Q Consensus        40 ~~~~l~~L~~~Gls~~--~~ii~~~P-l~~~~~~l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~  116 (279)
                      ++.++..|.++||++.  ++++..+| +.  .+++.+++.+|..+|++.++|++++.++|++|..+++  +++++++||+
T Consensus        46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il--~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e--~L~~~l~fL~  121 (335)
T 4fp9_B           46 LERVMSSLLDMGFSNAHINELLSVRRGAS--LQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM--QMRKRSSYLQ  121 (335)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHCSSCC--HHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHhCcccc--hhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH--HHHHHHHHHH
Confidence            4567899999999654  47899999 42  4678899999999999999999999999999999997  8999999999


Q ss_pred             HhcCCChHHHHHHHHhCCcccccChhhhhHhHHHHHH-HhCCCC--CCcchhcccccccccHHHHHHHHHHHH-HccCCh
Q 023626          117 TDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLT-KLGVKK--LNVPSTLNARLLNTRVERLRETLRFLR-SIGLNR  192 (279)
Q Consensus       117 ~~lGls~~~i~~ll~~~P~iL~~s~~~~l~~~i~~L~-~lG~~~--~~~li~~~P~ll~~s~~~l~~~v~~L~-~~G~s~  192 (279)
                       ++|++.+++.+++.++|++|+++.+ .+..++.+|+ ++|++.  ...++.++|++|.++.+.++++++||. +||++.
T Consensus       122 -~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~  199 (335)
T 4fp9_B          122 -KLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKH  199 (335)
T ss_dssp             -HTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCH
T ss_pred             -HcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCH
Confidence             6999999999999999999999976 5999999997 599986  457899999999999999999999999 999999


Q ss_pred             HHHHHHHhcCCcccccChhhhHHHHHHHHHHHhCC
Q 023626          193 REAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMER  227 (279)
Q Consensus       193 ~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg~  227 (279)
                      ++|.    + |++|+||+| +|++|+.||.. +|.
T Consensus       200 ~eIv----k-P~~l~ySLe-RIkpRH~fL~~-lG~  227 (335)
T 4fp9_B          200 PDIV----K-SEYLQYSLT-KIKQRHIYLER-LGR  227 (335)
T ss_dssp             HHHH----H-TTGGGSCHH-HHHHHHHHHHH-HTS
T ss_pred             HHcc----c-cchhhccHH-HHHHHHHHHHH-cCC
Confidence            9875    3 999999995 99999999996 786

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.57  E-value=9.2e-14  Score=110.13  Aligned_cols=168  Identities=19%  Similarity=0.308  Sum_probs=148.0

Q ss_pred             chhhHHHHHHHhcCCChHHHHHHHHhCCcccccChhhhhHhHHHHHHHhCCCC--CCcchhcccccccccHHHHHHHHHH
Q 023626          107 EIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKK--LNVPSTLNARLLNTRVERLRETLRF  184 (279)
Q Consensus       107 ~l~~~v~fL~~~lGls~~~i~~ll~~~P~iL~~s~~~~l~~~i~~L~~lG~~~--~~~li~~~P~ll~~s~~~l~~~v~~  184 (279)
                      ++...+.-+. -+|++++-+.-++.+.|++|...+. .++.+-.||+.+|+.+  ..+++..||.++++....+...+..
T Consensus        32 qlldiisefi-llglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqqdindtvrl  109 (239)
T 4fzv_B           32 QLLDIISEFI-LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRL  109 (239)
T ss_dssp             TTTHHHHHHH-HHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHH-hhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHhhHhHHHHH
Confidence            3444444444 4999999999999999999999976 5999999999999875  4578889999999999999999999


Q ss_pred             HH-HccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHHhCCChHHHhhCCceeecccCCchHHHHHHHHHCCC----
Q 023626          185 LR-SIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNV----  259 (279)
Q Consensus       185 L~-~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg~~~~~i~~~P~~L~~sl~~ri~pR~~~L~~~G~----  259 (279)
                      |. .+-|+..++.+++..||.++.-++ ..++-|+.|..-.||....+|++. .+|.||+. +|+.||-+|...|.    
T Consensus       110 lkekclftvqqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivks-eylqyslt-kikqrhiylerlgryqtp  186 (239)
T 4fzv_B          110 LKEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVKS-EYLQYSLT-KIKQRHIYLERLGRYQTP  186 (239)
T ss_dssp             HHHHSCCCHHHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHHT-TGGGSCHH-HHHHHHHHHHHHTCCCCC
T ss_pred             HHHhHHhhHHHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhHH-HHHHHHHH-HHHHHHhHHHHhcccCCC
Confidence            99 899999999999999999999999 799999999988899999999884 79999999 99999999998776    


Q ss_pred             ---------CCChhhhhccchhHHHHhhC
Q 023626          260 ---------RIKLNKMLLWSDNRFYTKWK  279 (279)
Q Consensus       260 ---------~~~l~~~l~~s~~~F~~~~~  279 (279)
                               ++-+.+++..||.+|..+-|
T Consensus       187 dkkgqtqipnpllkdilrvseaeflarta  215 (239)
T 4fzv_B          187 DKKGQTQIPNPLLKDILRVSEAEFLARTA  215 (239)
T ss_dssp             CSSSCCSSCCCCHHHHHTSCHHHHHHHTS
T ss_pred             CccCCccCCChHHHHHHHHhHHHHHHHHh
Confidence                     36688999999999998743

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.92  E-value=2.1e-09  Score=85.25  Aligned_cols=148  Identities=14%  Similarity=0.267  Sum_probs=129.5

Q ss_pred             hhHHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHHHHhcCCChHHHHHHHHhCCcccccChhhhhHhH
Q 023626           69 SQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPT  148 (279)
Q Consensus        69 ~~l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~~~lGls~~~i~~ll~~~P~iL~~s~~~~l~~~  148 (279)
                      +.+...+.-|.-+|+.++-+.-++.+.|+++...+-  +++.+-.||+ .+|+.+..+.+++-.||.|+++. ..++...
T Consensus        31 qqlldiisefillglnpepvcvvlkkspqllklpim--qmrkrssylq-klglgegklkrvlyccpeiftmr-qqdindt  106 (239)
T 4fzv_B           31 QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM--QMRKRSSYLQ-KLGLGEGKLKRVLYCCPEIFTMR-QQDINDT  106 (239)
T ss_dssp             CTTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH--HHHHHHHHHH-HHTTCSSCCHHHHHHCGGGGTSC-HHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH--HHHHHHHHHH-HhCCCccchhhheecCcHHHHHH-HhhHhHH
Confidence            445556667777899999999999999999999886  8999999999 79999999999999999999999 4579999


Q ss_pred             HHHHHH-hCCCC--CCcchhcccccccccHHHHHHHHHHHH-HccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHH
Q 023626          149 LDYLTK-LGVKK--LNVPSTLNARLLNTRVERLRETLRFLR-SIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVE  224 (279)
Q Consensus       149 i~~L~~-lG~~~--~~~li~~~P~ll~~s~~~l~~~v~~L~-~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~  224 (279)
                      +..|++ +-++-  ..+++..||.++.-+...++-+++|-- .+|+...++.+     ...+.||+ .+|+.+.-|+.+ 
T Consensus       107 vrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdivk-----seylqysl-tkikqrhiyler-  179 (239)
T 4fzv_B          107 VRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-----SEYLQYSL-TKIKQRHIYLER-  179 (239)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHH-----TTGGGSCH-HHHHHHHHHHHH-
T ss_pred             HHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhH-----HHHHHHHH-HHHHHHHhHHHH-
Confidence            999998 55553  447889999999999999999999988 99999888763     36789999 899999999986 


Q ss_pred             hCC
Q 023626          225 MER  227 (279)
Q Consensus       225 mg~  227 (279)
                      +|.
T Consensus       180 lgr  182 (239)
T 4fzv_B          180 LGR  182 (239)
T ss_dssp             HTC
T ss_pred             hcc
Confidence            664

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=86.48  E-value=0.8  Score=29.67  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=21.4

Q ss_pred             hHHHHHHHHhhCCCChhHHHHHHhh
Q 023626           70 QILSTIDFFKSKGLTNGHFSRLAYL   94 (279)
Q Consensus        70 ~l~~~i~~L~~~G~s~~~i~~li~~   94 (279)
                      .+..+++||++.|++.++|..++.+
T Consensus        29 p~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           29 PLATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             CHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            3667899999999999999988876

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=84.85  E-value=2.4  Score=27.38  Aligned_cols=36  Identities=11%  Similarity=-0.121  Sum_probs=28.6

Q ss_pred             HHhhCCccccccccCCchhhHHHHHHHhcCCChHHHHHHHHh
Q 023626           91 LAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIG  132 (279)
Q Consensus        91 li~~~P~lL~~~~e~~~l~~~v~fL~~~lGls~~~i~~ll~~  132 (279)
                      -+..+|.+-..     .+..+++||+ ..|++.++|...+.+
T Consensus        18 ~FL~dp~V~~s-----p~~~K~~FL~-sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           18 KFLQNSRVRQS-----PLATRRAFLK-KKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             HHHHCTTGGGS-----CHHHHHHHHH-HTTCCHHHHHHHHHH
T ss_pred             HHhCChhhhcC-----CHHHHHHHHH-HcCCCHHHHHHHHHc
Confidence            35567777665     4678999999 699999999988875

>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O

Probab=80.82  E-value=6.3  Score=30.91  Aligned_cols=80  Identities=15%  Similarity=0.073  Sum_probs=53.8

Q ss_pred             CCCCCCCCcccc-CC--CcchhhhHHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHHHHhcCCCh---
Q 023626           50 IGVIDPSTKPHK-LP--SPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASV---  123 (279)
Q Consensus        50 ~Gls~~~~ii~~-~P--l~~~~~~l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~~~lGls~---  123 (279)
                      -|.|.+..-.+. .|  +..+.+.+.+.+--|..-|+++++|+-++...-.+-....-  .=.....+|+ +.|+.+   
T Consensus        11 kG~S~S~~P~~~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~v--tG~kI~rILk-~~glapeiP   87 (153)
T 2xzm_O           11 KGISGSALPFKRRSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFL--TGQKILRILK-KNGCAPQLP   87 (153)
T ss_dssp             CCCCCCCCCSCCSCCSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHH--HSSCHHHHHH-HTTCCCSSC
T ss_pred             CCccCCCCCCCCCCCccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeee--ccchHHHHHH-HcCCCCCCc
Confidence            467655443344 45  78888999999999999999999999999876444222111  1123457787 688753   


Q ss_pred             HHHHHHHHh
Q 023626          124 EERRGLIIG  132 (279)
Q Consensus       124 ~~i~~ll~~  132 (279)
                      +|+-.++.+
T Consensus        88 EDL~~LikK   96 (153)
T 2xzm_O           88 EDLYFLIKK   96 (153)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666553

>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A

Probab=80.45  E-value=1.8  Score=29.55  Aligned_cols=26  Identities=23%  Similarity=0.303  Sum_probs=23.1

Q ss_pred             hHHHHHHHHhhCCCChhHHHHHHhhC
Q 023626           70 QILSTIDFFKSKGLTNGHFSRLAYLC   95 (279)
Q Consensus        70 ~l~~~i~~L~~~G~s~~~i~~li~~~   95 (279)
                      .+..+++||++.|++.++|..++.+.
T Consensus        34 p~~~K~~FL~sKGLt~eEI~~Al~ra   59 (70)
T 2w84_A           34 PLATRRAFLKKKGLTDEEIDMAFQQS   59 (70)
T ss_dssp             CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence            36788999999999999999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	279
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	82.66

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.66  E-value=0.42  Score=27.68  Aligned_cols=26  Identities=15%  Similarity=0.163  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHhcC
Q 023626          177 RLRETLRFLRSIGLNRREAAEFCARM  202 (279)
Q Consensus       177 ~l~~~v~~L~~~G~s~~~v~~~l~~~  202 (279)
                      ..++.|+-|.+|||+++++.+.++.+
T Consensus         3 ~~e~~i~~L~~MGF~~~~a~~AL~~~   28 (41)
T d1oqya1           3 EYETMLTEIMSMGYERERVVAALRAS   28 (41)
T ss_dssp             THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred             hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence            46788999999999999999888765