Citrus Sinensis ID: 023642
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 279 | 2.2.26 [Sep-21-2011] | |||||||
| Q40153 | 473 | LEC14B protein OS=Lithosp | N/A | no | 0.928 | 0.547 | 0.634 | 1e-93 | |
| O24467 | 475 | LEC14B homolog OS=Prunus | N/A | no | 0.906 | 0.532 | 0.635 | 5e-89 | |
| Q8TEB1 | 546 | DDB1- and CUL4-associated | yes | no | 0.630 | 0.322 | 0.324 | 4e-23 | |
| Q5R7H5 | 546 | DDB1- and CUL4-associated | yes | no | 0.630 | 0.322 | 0.324 | 5e-23 | |
| Q91VU6 | 549 | DDB1- and CUL4-associated | yes | no | 0.652 | 0.331 | 0.319 | 1e-22 | |
| Q5E9I8 | 546 | DDB1- and CUL4-associated | yes | no | 0.645 | 0.329 | 0.317 | 2e-22 | |
| Q5M9G8 | 549 | DDB1- and CUL4-associated | yes | no | 0.630 | 0.320 | 0.319 | 2e-22 | |
| P49695 | 742 | Probable serine/threonine | yes | no | 0.451 | 0.169 | 0.308 | 3e-07 | |
| P78706 | 604 | Transcriptional repressor | N/A | no | 0.412 | 0.190 | 0.285 | 3e-06 | |
| Q6GMD2 | 305 | WD repeat-containing prot | N/A | no | 0.473 | 0.432 | 0.264 | 7e-05 |
| >sp|Q40153|LE14B_LITER LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 343 bits (879), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 165/260 (63%), Positives = 208/260 (80%), Gaps = 1/260 (0%)
Query: 13 MGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEV 72
MGYAMSRFE + ++ + + ++ S KP+ LDHEIAQLT+L+S P E+ S+++
Sbjct: 1 MGYAMSRFETDVSVIFSS-SSDSETSHDSLINKPVKNLDHEIAQLTRLRSAPHENLSRDL 59
Query: 73 PGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQF 132
KR LP+ST+KMLAGRE N SGRGRFS+ADCCH++SR+LPVN P VDQ TSR Y+SQF
Sbjct: 60 LVKRVLPLSTMKMLAGREANVSGRGRFSSADCCHVVSRHLPVNDPCVVDQMTSRVYLSQF 119
Query: 133 SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192
S DGSLF+AGFQ IRIY+V++GWK+Q DI+AK +RWT+TD SLSPDQ+ L YAS++PI
Sbjct: 120 STDGSLFIAGFQGCHIRIYNVDKGWKVQNDIIAKCVRWTITDASLSPDQKFLAYASLTPI 179
Query: 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252
HIV GS ES ANVT+IHDGLDFS+ DDGGYSFG+FS+KFSTDGRE+VAG+SD+ I
Sbjct: 180 AHIVKFGSAATESHANVTDIHDGLDFSSNDDGGYSFGVFSIKFSTDGREIVAGTSDESIC 239
Query: 253 VYDLEANKLSLRILAHTVNI 272
VYDLEA++LSLRI AH ++
Sbjct: 240 VYDLEADRLSLRISAHESDV 259
|
Lithospermum erythrorhizon (taxid: 34254) |
| >sp|O24467|LE14B_PRUAR LEC14B homolog OS=Prunus armeniaca PE=2 SV=1 | Back alignment and function description |
|---|
Score = 327 bits (839), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 162/255 (63%), Positives = 201/255 (78%), Gaps = 2/255 (0%)
Query: 18 SRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRH 77
+RF ++ D+ + V + +S+ + + DHEIAQLTK +S P + S+++PGK
Sbjct: 5 TRFGKDNSACDSGNAVEGSGSSKGP-NEVSNDFDHEIAQLTKHRSRPHQLLSQDMPGKSR 63
Query: 78 LPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS 137
L VST+KML GRE N+SGRGRFS+AD CH+LSRYLP+NGPW VDQ+TS AYVSQFS DG
Sbjct: 64 LLVSTMKMLVGRESNHSGRGRFSSADGCHVLSRYLPINGPWGVDQSTSPAYVSQFSNDGL 123
Query: 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197
FVAGFQ IRIY+V++GWK+QKDIL KSLRWT+TDTSLSPDQR+LVYASM+PIV+IV+
Sbjct: 124 FFVAGFQGGHIRIYNVDKGWKVQKDILTKSLRWTITDTSLSPDQRYLVYASMTPIVNIVN 183
Query: 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
VGS ESLANVTEIH+GLDFS D FGIFS++FSTDGRELVA S D IYVYDL+
Sbjct: 184 VGSSMTESLANVTEIHEGLDFSVGGDED-EFGIFSVRFSTDGRELVAASRDASIYVYDLQ 242
Query: 258 ANKLSLRILAHTVNI 272
ANK++LRI AH+ ++
Sbjct: 243 ANKVNLRIPAHSSDV 257
|
Prunus armeniaca (taxid: 36596) |
| >sp|Q8TEB1|DCA11_HUMAN DDB1- and CUL4-associated factor 11 OS=Homo sapiens GN=DCAF11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 104/191 (54%), Gaps = 15/191 (7%)
Query: 84 KMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGF 143
+ML RE RG FS + ++S +LP N D + +A+ +S DG +F++
Sbjct: 133 RMLHQRERGLCHRGSFSLGEQSRVISHFLP-NDLGFTDSYSQKAFCGIYSKDGQIFMSAC 191
Query: 144 QASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 201
Q IR+YD G ++ K I A+ + W+V D + +PD H +Y+S S +HI ++ G G
Sbjct: 192 QDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEG 251
Query: 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261
+ H LD + F +FS+ S+DGRE++ G++D C+YV+D E N+
Sbjct: 252 ---------DTHTALDLRPDE---RRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRR 299
Query: 262 SLRILAHTVNI 272
+L+I +H ++
Sbjct: 300 TLQIESHEDDV 310
|
May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex. Homo sapiens (taxid: 9606) |
| >sp|Q5R7H5|DCA11_PONAB DDB1- and CUL4-associated factor 11 OS=Pongo abelii GN=DCAF11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 104/191 (54%), Gaps = 15/191 (7%)
Query: 84 KMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGF 143
+ML RE RG FS + ++S +LP N D + +A+ +S DG +F++
Sbjct: 133 RMLHQRERGLCHRGSFSLGEQSRVISHFLP-NDLGFTDSYSQKAFCGIYSKDGQIFMSAC 191
Query: 144 QASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 201
Q IR+YD G ++ K I A+ + W+V D + +PD H +Y+S S +HI ++ G G
Sbjct: 192 QDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGSHFLYSSWSDYIHICNIYGEG 251
Query: 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261
+ H LD + F +FS+ S+DGRE++ G++D C+YV+D E N+
Sbjct: 252 ---------DTHTALDLRPDE---RRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRR 299
Query: 262 SLRILAHTVNI 272
+L+I +H ++
Sbjct: 300 TLQIESHEDDV 310
|
May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex. Pongo abelii (taxid: 9601) |
| >sp|Q91VU6|DCA11_MOUSE DDB1- and CUL4-associated factor 11 OS=Mus musculus GN=Dcaf11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 106/197 (53%), Gaps = 15/197 (7%)
Query: 78 LPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS 137
L S +ML RE RG FS + ++S +LP + + D + +A+ +S DG
Sbjct: 127 LQQSFPQMLHQRERGLCHRGSFSLGEQSRVMSHFLPNDLSF-TDTYSQKAFCGIYSKDGQ 185
Query: 138 LFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196
+F++ Q IR+YD G + K I A+ + W+V D + +PD H +Y+S S +HI
Sbjct: 186 IFMSACQDQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHIC 245
Query: 197 DV-GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255
++ G G + H LD + F +FS+ S+DGRE++ G++D C+YV+D
Sbjct: 246 NIYGEG---------DTHTALDLRPDE---RRFAVFSIAVSSDGREVLGGANDGCLYVFD 293
Query: 256 LEANKLSLRILAHTVNI 272
E N+ +L+I +H ++
Sbjct: 294 REQNRRTLQIESHEDDV 310
|
May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex. Mus musculus (taxid: 10090) |
| >sp|Q5E9I8|DCA11_BOVIN DDB1- and CUL4-associated factor 11 OS=Bos taurus GN=DCAF11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 106/195 (54%), Gaps = 15/195 (7%)
Query: 80 VSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLF 139
+S +ML RE +G FS + ++S +LP N D + +A+ +S DG +F
Sbjct: 129 LSFPQMLHQRERGLCHQGSFSLGERSRVMSHFLP-NDLGFTDTYSQKAFCGIYSKDGQIF 187
Query: 140 VAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198
++ Q IR+YD G ++ K I A+ + W+V D + +PD H +Y+S S +HI ++
Sbjct: 188 MSACQDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNI 247
Query: 199 -GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
G G + H LD + F +FS+ S+DGRE++ G++D C+YV+D E
Sbjct: 248 YGEG---------DTHTALDLRPDE---RRFAVFSIAVSSDGREVLGGANDGCLYVFDRE 295
Query: 258 ANKLSLRILAHTVNI 272
N+ +L+I +H ++
Sbjct: 296 QNRRTLQIESHEDDV 310
|
May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex. Bos taurus (taxid: 9913) |
| >sp|Q5M9G8|DCA11_RAT DDB1- and CUL4-associated factor 11 OS=Rattus norvegicus GN=Dcaf11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 103/191 (53%), Gaps = 15/191 (7%)
Query: 84 KMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGF 143
+ML RE RG FS + ++S +LP + + D + +A+ +S DG +F++
Sbjct: 133 RMLHQRERGLCHRGSFSLGEQSRVMSHFLPNDLSF-TDTYSQKAFCGIYSKDGQIFMSAC 191
Query: 144 QASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 201
Q IR+YD G + K I A+ + W+V D + +PD H +Y+S S +HI + G G
Sbjct: 192 QDQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICSIYGEG 251
Query: 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261
+ H LD + F +FS+ S+DGRE++ G++D C+YV+D E N+
Sbjct: 252 ---------DTHTALDLRPDE---RRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRR 299
Query: 262 SLRILAHTVNI 272
+L+I +H ++
Sbjct: 300 TLQIESHEDDV 310
|
May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex. Rattus norvegicus (taxid: 10116) |
| >sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 183
T Y FS DGS+ +G + IR++DV G ++D+L V + SPD
Sbjct: 585 TDYVYAVAFSPDGSMVASGSRDGTIRLWDVATG--KERDVLQAPAE-NVVSLAFSPDGSM 641
Query: 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243
LV+ S S VH+ DV SG E+L G++ + ++ FS DG L
Sbjct: 642 LVHGSDS-TVHLWDVASG--EALHTFE--------------GHTDWVRAVAFSPDGALLA 684
Query: 244 AGSSDDCIYVYDLEANKLSLRILAHT 269
+GS D I ++D+ A + + HT
Sbjct: 685 SGSDDRTIRLWDVAAQEEHTTLEGHT 710
|
May play a regulatory role during the complex growth cycle and in secondary metabolite production. Thermomonospora curvata (taxid: 2020) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|P78706|RCO1_NEUCR Transcriptional repressor rco-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rco-1 PE=4 SV=2 | Back alignment and function description |
|---|
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 18/133 (13%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
Y FS DG +G +R++D+E G ++ S+ VT ++SPD++ +
Sbjct: 390 YSLDFSRDGRTIASGSGDRTVRLWDIETG----QNTSVLSIEDGVTTVAISPDKQFVAAG 445
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S+ V + D+ E L +G D G+ ++S+ FS DGR LV+GS
Sbjct: 446 SLDKSVRVWDMRGYLAERL-------EGPD-------GHKDSVYSVAFSPDGRNLVSGSL 491
Query: 248 DDCIYVYDLEANK 260
D I +++L A +
Sbjct: 492 DKTIKMWELSAPR 504
|
Represses transcription by RNA polymerase II. May be involved at several stages of conidiation and other growth and development processes. Appears to regulate genes that are expressed in asexual and sexual spore pathways. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) |
| >sp|Q6GMD2|WDR61_XENLA WD repeat-containing protein 61 OS=Xenopus laevis GN=wdr61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 27/159 (16%)
Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
PVD A+ FS D G ++ I+ VE G +K+ + + + S
Sbjct: 106 PVD-----AWSVAFSPDSQHLATGSHVGKVNIFGVETG---KKEYSLDTRGKFILSIAYS 157
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
PD ++L ++ I++I D+ +G L + E G++ I SL FSTD
Sbjct: 158 PDGKYLASGAIDGIINIFDIATG---KLLHTLE-------------GHAMPIRSLTFSTD 201
Query: 239 GRELVAGSSDDCIYVYDLEANKLSLRILAH---TVNIAL 274
+ LV S D I +YD++ L+ + H +N+A
Sbjct: 202 SQLLVTASDDGYIKIYDVQHASLAATLSGHGSWVLNVAF 240
|
Xenopus laevis (taxid: 8355) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 279 | ||||||
| 225436851 | 486 | PREDICTED: LEC14B homolog [Vitis vinifer | 0.971 | 0.557 | 0.775 | 1e-119 | |
| 22328262 | 493 | transducin/WD40 domain-containing protei | 0.974 | 0.551 | 0.733 | 1e-112 | |
| 297809835 | 493 | transducin family protein [Arabidopsis l | 0.974 | 0.551 | 0.729 | 1e-112 | |
| 3924603 | 555 | putative WD-repeat protein [Arabidopsis | 0.946 | 0.475 | 0.744 | 1e-111 | |
| 358248886 | 493 | uncharacterized protein LOC100815163 [Gl | 0.971 | 0.549 | 0.720 | 1e-110 | |
| 224128636 | 488 | predicted protein [Populus trichocarpa] | 0.967 | 0.553 | 0.735 | 1e-109 | |
| 357442645 | 321 | LEC14B protein, partial [Medicago trunca | 0.971 | 0.844 | 0.691 | 1e-106 | |
| 357442621 | 495 | LEC14B protein [Medicago truncatula] gi| | 0.971 | 0.547 | 0.691 | 1e-105 | |
| 449491526 | 488 | PREDICTED: LOW QUALITY PROTEIN: LEC14B h | 0.967 | 0.553 | 0.694 | 1e-102 | |
| 449462296 | 488 | PREDICTED: LEC14B homolog [Cucumis sativ | 0.967 | 0.553 | 0.694 | 1e-102 |
| >gi|225436851|ref|XP_002271734.1| PREDICTED: LEC14B homolog [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/272 (77%), Positives = 236/272 (86%), Gaps = 1/272 (0%)
Query: 1 MFVTASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKL 60
M+ TAS +EMGYAMSR E++S+F DA ++ N+ + K L+ LDHEI+QLTKL
Sbjct: 1 MYFTASEGAANEMGYAMSRLELDSDFCDAGKDIHGNDNTE-RLNKELNHLDHEISQLTKL 59
Query: 61 KSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPV 120
+S P E S+ +PGKR PVSTVKMLAGREGNYSGRGRFS+ADCCHMLSRYLPVNGPW V
Sbjct: 60 RSGPHECLSQIIPGKRDSPVSTVKMLAGREGNYSGRGRFSSADCCHMLSRYLPVNGPWLV 119
Query: 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180
DQ TSRAYVSQFSADGSLFVAGFQ S IRIY+V+RGWK+QK+ILAKSLRWTVTDTSLSPD
Sbjct: 120 DQMTSRAYVSQFSADGSLFVAGFQGSHIRIYNVDRGWKVQKNILAKSLRWTVTDTSLSPD 179
Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240
QRHLVYASMSPIVHIV++GS ESLAN+TEIHDGLDFSAADD GYSFGIFS+KFSTDGR
Sbjct: 180 QRHLVYASMSPIVHIVNIGSAATESLANITEIHDGLDFSAADDEGYSFGIFSVKFSTDGR 239
Query: 241 ELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272
ELVAGSSDD IYVYDLEANKLSLRILAHT ++
Sbjct: 240 ELVAGSSDDSIYVYDLEANKLSLRILAHTSDV 271
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22328262|ref|NP_192211.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|334186335|ref|NP_001190666.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|20466538|gb|AAM20586.1| putative WD-repeat protein [Arabidopsis thaliana] gi|23198298|gb|AAN15676.1| putative WD-repeat protein [Arabidopsis thaliana] gi|332656861|gb|AEE82261.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332656862|gb|AEE82262.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/274 (73%), Positives = 231/274 (84%), Gaps = 2/274 (0%)
Query: 1 MFVTASGVDFDEMGYAMSRFEIESEFYDAADTV--NQASNSRSKFKKPLSALDHEIAQLT 58
MF S D DEMGYAMSR EIES+ D V +S+ + + L+ LDHEI+Q+T
Sbjct: 1 MFFGPSEFDADEMGYAMSRLEIESDLCDTGKDVCGVGSSSGSHRSSEHLADLDHEISQVT 60
Query: 59 KLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPW 118
KLKS P + +S+EVPG+ LPVSTV+MLAGRE N+SGRGRFSAADCCHMLSRYLP GPW
Sbjct: 61 KLKSSPHQRYSREVPGRHQLPVSTVRMLAGRESNFSGRGRFSAADCCHMLSRYLPTKGPW 120
Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
VDQ SRAYVSQFS DGSLF+AGFQ S+IRIY+VE+GWK+QKDILAKSLRWTVTDTSLS
Sbjct: 121 LVDQMDSRAYVSQFSTDGSLFIAGFQGSRIRIYNVEKGWKVQKDILAKSLRWTVTDTSLS 180
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
PDQR+LVYASMSPIVHIVDVGSG+ ES ANVTEIHDGLDFS+ +DGGYSFGIFS+KFSTD
Sbjct: 181 PDQRNLVYASMSPIVHIVDVGSGSTESHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTD 240
Query: 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272
GRE+VAGSSDD IYVYDLEAN++SLR +AHT ++
Sbjct: 241 GREVVAGSSDDSIYVYDLEANRVSLRTVAHTSDV 274
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297809835|ref|XP_002872801.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297318638|gb|EFH49060.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/274 (72%), Positives = 232/274 (84%), Gaps = 2/274 (0%)
Query: 1 MFVTASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFK--KPLSALDHEIAQLT 58
MF S +D DEMGYAMSR EIES+ D +S + + + L+ LDHEI+Q+T
Sbjct: 1 MFFGPSEIDTDEMGYAMSRLEIESDLCDTGKDFCGVGSSSASHRSSEHLADLDHEISQVT 60
Query: 59 KLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPW 118
KLKS P + +S+EVPG+ LPVSTV+MLAGRE N+SGRGRFSAADCCHMLSRYLP+ GPW
Sbjct: 61 KLKSSPHQRYSREVPGRHQLPVSTVRMLAGRESNFSGRGRFSAADCCHMLSRYLPIKGPW 120
Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
VDQ SRAYVSQFS DGSLF+AGFQ S+IRIY+VE+GWK+QKDILAKSLRWTVTDTSLS
Sbjct: 121 LVDQMDSRAYVSQFSTDGSLFIAGFQGSRIRIYNVEKGWKVQKDILAKSLRWTVTDTSLS 180
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
PDQR+LVYASMSPIVHIVDVGSGT ES ANVTEIHDGLDFS+ +DGGYSFGIFS+KFSTD
Sbjct: 181 PDQRNLVYASMSPIVHIVDVGSGTTESHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTD 240
Query: 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272
GR++VAGSSDD IYVYDLEAN++SLR +AHT ++
Sbjct: 241 GRDIVAGSSDDSIYVYDLEANRVSLRTVAHTSDV 274
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3924603|gb|AAC79104.1| putative WD-repeat protein [Arabidopsis thaliana] gi|7269787|emb|CAB77787.1| putative WD-repeat protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/266 (74%), Positives = 228/266 (85%), Gaps = 2/266 (0%)
Query: 9 DFDEMGYAMSRFEIESEFYDAADTV--NQASNSRSKFKKPLSALDHEIAQLTKLKSEPKE 66
D DEMGYAMSR EIES+ D V +S+ + + L+ LDHEI+Q+TKLKS P +
Sbjct: 71 DADEMGYAMSRLEIESDLCDTGKDVCGVGSSSGSHRSSEHLADLDHEISQVTKLKSSPHQ 130
Query: 67 HFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSR 126
+S+EVPG+ LPVSTV+MLAGRE N+SGRGRFSAADCCHMLSRYLP GPW VDQ SR
Sbjct: 131 RYSREVPGRHQLPVSTVRMLAGRESNFSGRGRFSAADCCHMLSRYLPTKGPWLVDQMDSR 190
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
AYVSQFS DGSLF+AGFQ S+IRIY+VE+GWK+QKDILAKSLRWTVTDTSLSPDQR+LVY
Sbjct: 191 AYVSQFSTDGSLFIAGFQGSRIRIYNVEKGWKVQKDILAKSLRWTVTDTSLSPDQRNLVY 250
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
ASMSPIVHIVDVGSG+ ES ANVTEIHDGLDFS+ +DGGYSFGIFS+KFSTDGRE+VAGS
Sbjct: 251 ASMSPIVHIVDVGSGSTESHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTDGREVVAGS 310
Query: 247 SDDCIYVYDLEANKLSLRILAHTVNI 272
SDD IYVYDLEAN++SLR +AHT ++
Sbjct: 311 SDDSIYVYDLEANRVSLRTVAHTSDV 336
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358248886|ref|NP_001239957.1| uncharacterized protein LOC100815163 [Glycine max] gi|255636711|gb|ACU18691.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/272 (72%), Positives = 227/272 (83%), Gaps = 1/272 (0%)
Query: 1 MFVTASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKL 60
M+ TAS + DEMGYAMSR EIES + D + + S+S + K+PL LD+EIAQ+TKL
Sbjct: 1 MYATASALYIDEMGYAMSRLEIESGLSEDGDAIQEDSSS-GETKRPLKNLDNEIAQITKL 59
Query: 61 KSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPV 120
KS P + + G+ LPVS VKMLAGRE NYSGRGRFS+AD CH+LSRYLPVNGPW +
Sbjct: 60 KSTPHQQLVQVGTGRPELPVSPVKMLAGRESNYSGRGRFSSADRCHLLSRYLPVNGPWLI 119
Query: 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180
DQ +SRAYVSQFSADGSLF+AGFQ S IRIY+V+RGWK+QK+ILAK+LRWT+TDTSLSPD
Sbjct: 120 DQMSSRAYVSQFSADGSLFIAGFQGSHIRIYNVDRGWKVQKNILAKNLRWTITDTSLSPD 179
Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240
QR+LVYASMSPIVHIV+ GS ESLANVTEIHDGLDFS+ DDGGYSFGIF +KFS DG+
Sbjct: 180 QRYLVYASMSPIVHIVNAGSAETESLANVTEIHDGLDFSSNDDGGYSFGIFCVKFSKDGK 239
Query: 241 ELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272
ELVAGSS D IYVYDLEANKLSLRILAHT ++
Sbjct: 240 ELVAGSSGDSIYVYDLEANKLSLRILAHTCDV 271
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128636|ref|XP_002320381.1| predicted protein [Populus trichocarpa] gi|222861154|gb|EEE98696.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/272 (73%), Positives = 222/272 (81%), Gaps = 2/272 (0%)
Query: 1 MFVTASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKL 60
M+ A DEMGYAMSR E ESE D T+ +A +S+ + L+ LDHEIAQ+TKL
Sbjct: 1 MYFFARRTSVDEMGYAMSRLETESELCDGGKTIPEAGSSK-RASNWLNNLDHEIAQVTKL 59
Query: 61 KSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPV 120
KS P + ++ VPG VSTVKML GRE NYS RGRFSAAD CHMLSRYLPVNGPW V
Sbjct: 60 KSSPHKQLAELVPGMHKSSVSTVKMLVGREANYSARGRFSAADRCHMLSRYLPVNGPWLV 119
Query: 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180
DQ ++RAYVSQFSADGSLFVAGFQ S IRIY+VE+GWK+QK+ILAKSLRWTVTDTSLSPD
Sbjct: 120 DQMSTRAYVSQFSADGSLFVAGFQGSYIRIYNVEKGWKVQKNILAKSLRWTVTDTSLSPD 179
Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240
QRHLVYASMSPIVHIVD GS ESLANVTE HDGLDFS+ DGGYSFGIFS+KFSTDGR
Sbjct: 180 QRHLVYASMSPIVHIVDAGSAETESLANVTEFHDGLDFSSG-DGGYSFGIFSVKFSTDGR 238
Query: 241 ELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272
ELVAGS+DD IYVYDLE NKLSLRILAHT ++
Sbjct: 239 ELVAGSNDDSIYVYDLEQNKLSLRILAHTSDV 270
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357442645|ref|XP_003591600.1| LEC14B protein, partial [Medicago truncatula] gi|355480648|gb|AES61851.1| LEC14B protein, partial [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/272 (69%), Positives = 222/272 (81%), Gaps = 1/272 (0%)
Query: 1 MFVTASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKL 60
M+ + + D+MGYAMSR +++S + + + + S S K KK LD+EIAQ+TKL
Sbjct: 1 MYAISGALYVDQMGYAMSRLDVDSSDTEDGNAILEDS-STGKAKKAFENLDNEIAQITKL 59
Query: 61 KSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPV 120
KS P + + G++ LPVS VKMLAGRE N SGRGRFS+AD CH+LSRYLPVNGPWP+
Sbjct: 60 KSTPHQLLVHDGSGRKELPVSPVKMLAGRESNCSGRGRFSSADRCHLLSRYLPVNGPWPI 119
Query: 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180
DQ SRAYVSQFSADGSLFVAGFQ + I+IY+VE+GWK+QK+IL KSLRWT+TDTSLSPD
Sbjct: 120 DQMPSRAYVSQFSADGSLFVAGFQGNHIKIYNVEKGWKVQKNILTKSLRWTITDTSLSPD 179
Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240
Q HLVYASMSPIVHIV+VGS ESLANVTEIHDGLDFS+ DDGGYSFGIFSLKFSTDG+
Sbjct: 180 QSHLVYASMSPIVHIVNVGSSETESLANVTEIHDGLDFSSNDDGGYSFGIFSLKFSTDGK 239
Query: 241 ELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272
ELVAG+S D IYVYDLE NK+SLRILAHT ++
Sbjct: 240 ELVAGTSGDSIYVYDLETNKVSLRILAHTADV 271
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357442621|ref|XP_003591588.1| LEC14B protein [Medicago truncatula] gi|355480636|gb|AES61839.1| LEC14B protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/272 (69%), Positives = 222/272 (81%), Gaps = 1/272 (0%)
Query: 1 MFVTASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKL 60
M+ + + D+MGYAMSR +++S + + + + S S K KK LD+EIAQ+TKL
Sbjct: 1 MYAISGALYVDQMGYAMSRLDVDSSDTEDGNAILEDS-STGKAKKAFENLDNEIAQITKL 59
Query: 61 KSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPV 120
KS P + + G++ LPVS VKMLAGRE N SGRGRFS+AD CH+LSRYLPVNGPWP+
Sbjct: 60 KSTPHQLLVHDGSGRKELPVSPVKMLAGRESNCSGRGRFSSADRCHLLSRYLPVNGPWPI 119
Query: 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180
DQ SRAYVSQFSADGSLFVAGFQ + I+IY+VE+GWK+QK+IL KSLRWT+TDTSLSPD
Sbjct: 120 DQMPSRAYVSQFSADGSLFVAGFQGNHIKIYNVEKGWKVQKNILTKSLRWTITDTSLSPD 179
Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240
Q HLVYASMSPIVHIV+VGS ESLANVTEIHDGLDFS+ DDGGYSFGIFSLKFSTDG+
Sbjct: 180 QSHLVYASMSPIVHIVNVGSSETESLANVTEIHDGLDFSSNDDGGYSFGIFSLKFSTDGK 239
Query: 241 ELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272
ELVAG+S D IYVYDLE NK+SLRILAHT ++
Sbjct: 240 ELVAGTSGDSIYVYDLETNKVSLRILAHTADV 271
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449491526|ref|XP_004158926.1| PREDICTED: LOW QUALITY PROTEIN: LEC14B homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/272 (69%), Positives = 215/272 (79%), Gaps = 2/272 (0%)
Query: 1 MFVTASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKL 60
M+ S +MGYA+SR EI S+ D AS KPL+ LD EIAQLT++
Sbjct: 1 MYGIPSWAIIGDMGYALSRLEIGSDC--DGDMSTSASGEAQVSNKPLNNLDDEIAQLTRM 58
Query: 61 KSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPV 120
KS P H S+ +PGK + +S VKMLAGRE NYSG+GRFSA DCCH+LSRYLPVNGPW V
Sbjct: 59 KSGPSAHLSQVLPGKPEVYISPVKMLAGRECNYSGKGRFSAGDCCHVLSRYLPVNGPWLV 118
Query: 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180
DQ TSRAYVSQFS+DGSLFVAGFQ S IRIY+V+ GWK+QK+ILAKSLRWT+TDTSLSPD
Sbjct: 119 DQMTSRAYVSQFSSDGSLFVAGFQGSHIRIYNVDSGWKVQKNILAKSLRWTITDTSLSPD 178
Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240
QR+LVYASMSPI+HIV+V S ESLANVTEIH+GLDF A DG SFGIFS+KFSTDGR
Sbjct: 179 QRYLVYASMSPIIHIVNVTSAETESLANVTEIHEGLDFCAHGDGRDSFGIFSVKFSTDGR 238
Query: 241 ELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272
ELVAGSSDD IYVYDLE NKLSLRILAH ++
Sbjct: 239 ELVAGSSDDSIYVYDLETNKLSLRILAHRSDV 270
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462296|ref|XP_004148877.1| PREDICTED: LEC14B homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/272 (69%), Positives = 215/272 (79%), Gaps = 2/272 (0%)
Query: 1 MFVTASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKL 60
M+ S +MGYA+SR EI S+ D AS KPL+ LD EIAQLT++
Sbjct: 1 MYGIPSWAIIGDMGYALSRLEIGSDC--DGDMSTSASGEAQVSNKPLNNLDDEIAQLTRM 58
Query: 61 KSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPV 120
KS P H S+ +PGK + +S VKMLAGRE NYSG+GRFSA DCCH+LSRYLPVNGPW V
Sbjct: 59 KSGPSAHLSQVLPGKPEVYISPVKMLAGRECNYSGKGRFSAGDCCHVLSRYLPVNGPWLV 118
Query: 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180
DQ TSRAYVSQFS+DGSLFVAGFQ S IRIY+V+ GWK+QK+ILAKSLRWT+TDTSLSPD
Sbjct: 119 DQMTSRAYVSQFSSDGSLFVAGFQGSHIRIYNVDSGWKVQKNILAKSLRWTITDTSLSPD 178
Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240
QR+LVYASMSPI+HIV+V S ESLANVTEIH+GLDF A DG SFGIFS+KFSTDGR
Sbjct: 179 QRYLVYASMSPIIHIVNVTSAETESLANVTEIHEGLDFCAHGDGRDSFGIFSVKFSTDGR 238
Query: 241 ELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272
ELVAGSSDD IYVYDLE NKLSLRILAH ++
Sbjct: 239 ELVAGSSDDSIYVYDLETNKLSLRILAHRSDV 270
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 279 | ||||||
| TAIR|locus:2139335 | 493 | AT4G03020 "AT4G03020" [Arabido | 0.974 | 0.551 | 0.740 | 1.7e-105 | |
| UNIPROTKB|Q8TEB1 | 546 | DCAF11 "DDB1- and CUL4-associa | 0.616 | 0.315 | 0.336 | 9.7e-23 | |
| ZFIN|ZDB-GENE-050809-116 | 541 | dcaf11 "ddb1 and cul4 associat | 0.630 | 0.325 | 0.328 | 1.2e-22 | |
| UNIPROTKB|Q5R7H5 | 546 | DCAF11 "DDB1- and CUL4-associa | 0.616 | 0.315 | 0.336 | 1.3e-22 | |
| UNIPROTKB|F1SGL8 | 546 | DCAF11 "Uncharacterized protei | 0.616 | 0.315 | 0.331 | 1.6e-22 | |
| RGD|1311288 | 549 | Dcaf11 "DDB1 and CUL4 associat | 0.867 | 0.440 | 0.280 | 2.7e-22 | |
| UNIPROTKB|F1MVT2 | 546 | DCAF11 "DDB1- and CUL4-associa | 0.630 | 0.322 | 0.329 | 3.4e-22 | |
| UNIPROTKB|Q5E9I8 | 546 | DCAF11 "DDB1- and CUL4-associa | 0.630 | 0.322 | 0.329 | 3.4e-22 | |
| MGI|MGI:90168 | 549 | Dcaf11 "DDB1 and CUL4 associat | 0.637 | 0.324 | 0.336 | 3.5e-22 | |
| ASPGD|ASPL0000074293 | 660 | AN4800 [Emericella nidulans (t | 0.512 | 0.216 | 0.351 | 1.8e-17 |
| TAIR|locus:2139335 AT4G03020 "AT4G03020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 203/274 (74%), Positives = 232/274 (84%)
Query: 1 MFVTASGVDFDEMGYAMSRFEIESEFYDAA-DTVNQASNSRS-KFKKPLSALDHEIAQLT 58
MF S D DEMGYAMSR EIES+ D D S+S S + + L+ LDHEI+Q+T
Sbjct: 1 MFFGPSEFDADEMGYAMSRLEIESDLCDTGKDVCGVGSSSGSHRSSEHLADLDHEISQVT 60
Query: 59 KLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPW 118
KLKS P + +S+EVPG+ LPVSTV+MLAGRE N+SGRGRFSAADCCHMLSRYLP GPW
Sbjct: 61 KLKSSPHQRYSREVPGRHQLPVSTVRMLAGRESNFSGRGRFSAADCCHMLSRYLPTKGPW 120
Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
VDQ SRAYVSQFS DGSLF+AGFQ S+IRIY+VE+GWK+QKDILAKSLRWTVTDTSLS
Sbjct: 121 LVDQMDSRAYVSQFSTDGSLFIAGFQGSRIRIYNVEKGWKVQKDILAKSLRWTVTDTSLS 180
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
PDQR+LVYASMSPIVHIVDVGSG+ ES ANVTEIHDGLDFS+ +DGGYSFGIFS+KFSTD
Sbjct: 181 PDQRNLVYASMSPIVHIVDVGSGSTESHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTD 240
Query: 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272
GRE+VAGSSDD IYVYDLEAN++SLR +AHT ++
Sbjct: 241 GREVVAGSSDDSIYVYDLEANRVSLRTVAHTSDV 274
|
|
| UNIPROTKB|Q8TEB1 DCAF11 "DDB1- and CUL4-associated factor 11" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 270 (100.1 bits), Expect = 9.7e-23, P = 9.7e-23
Identities = 63/187 (33%), Positives = 103/187 (55%)
Query: 84 KMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGF 143
+ML RE RG FS + ++S +LP N D + +A+ +S DG +F++
Sbjct: 133 RMLHQRERGLCHRGSFSLGEQSRVISHFLP-NDLGFTDSYSQKAFCGIYSKDGQIFMSAC 191
Query: 144 QASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 201
Q IR+YD G ++ K I A+ + W+V D + +PD H +Y+S S +HI ++ G G
Sbjct: 192 QDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEG 251
Query: 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261
+ H LD D+ F +FS+ S+DGRE++ G++D C+YV+D E N+
Sbjct: 252 ---------DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRR 299
Query: 262 SLRILAH 268
+L+I +H
Sbjct: 300 TLQIESH 306
|
|
| ZFIN|ZDB-GENE-050809-116 dcaf11 "ddb1 and cul4 associated factor 11" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 1.2e-22, P = 1.2e-22
Identities = 62/189 (32%), Positives = 102/189 (53%)
Query: 81 STVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFV 140
S MLA RE FS +C + S +LP + + D + + +S +G++F+
Sbjct: 134 SFTHMLAEREQGRCRGSSFSHGECSRIRSHFLPNHVVYK-DTYQQKVFCGVYSDEGNMFL 192
Query: 141 AGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199
+ Q IR+YD RG + ++K + A+ + W++ D +PD R ++Y+S S +H+ V
Sbjct: 193 SACQDQNIRLYDTSRGRFTLKKTVKARDVGWSILDVCFTPDARCVLYSSWSDYIHVCSVD 252
Query: 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259
E H LD + D+ F +FSL STDG+E++ G++D C+YV+D E N
Sbjct: 253 GDN--------ETHTALDLNP-DER--RFCVFSLAASTDGKEILGGANDGCLYVFDREQN 301
Query: 260 KLSLRILAH 268
K +L+I AH
Sbjct: 302 KRTLKIDAH 310
|
|
| UNIPROTKB|Q5R7H5 DCAF11 "DDB1- and CUL4-associated factor 11" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 63/187 (33%), Positives = 103/187 (55%)
Query: 84 KMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGF 143
+ML RE RG FS + ++S +LP N D + +A+ +S DG +F++
Sbjct: 133 RMLHQRERGLCHRGSFSLGEQSRVISHFLP-NDLGFTDSYSQKAFCGIYSKDGQIFMSAC 191
Query: 144 QASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 201
Q IR+YD G ++ K I A+ + W+V D + +PD H +Y+S S +HI ++ G G
Sbjct: 192 QDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGSHFLYSSWSDYIHICNIYGEG 251
Query: 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261
+ H LD D+ F +FS+ S+DGRE++ G++D C+YV+D E N+
Sbjct: 252 ---------DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRR 299
Query: 262 SLRILAH 268
+L+I +H
Sbjct: 300 TLQIESH 306
|
|
| UNIPROTKB|F1SGL8 DCAF11 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 268 (99.4 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 62/187 (33%), Positives = 102/187 (54%)
Query: 84 KMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGF 143
+ML RE RG FS + ++S +LP N +D + +A+ +S DG +F++
Sbjct: 133 QMLLQRERGLCHRGSFSLGEQSRVMSHFLP-NDLGFIDTYSQKAFCGIYSKDGQIFMSAC 191
Query: 144 QASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 201
Q IR+YD G + K I A+ + W+V D + +PD H +Y+S S +HI ++ G G
Sbjct: 192 QDQVIRMYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEG 251
Query: 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261
+ H LD + F +FS+ S+DGRE++ G++D C+YV+D E N+
Sbjct: 252 ---------DTHTALDLRPVER---RFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRR 299
Query: 262 SLRILAH 268
+L+I +H
Sbjct: 300 TLQIESH 306
|
|
| RGD|1311288 Dcaf11 "DDB1 and CUL4 associated factor 11" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 266 (98.7 bits), Expect = 2.7e-22, P = 2.7e-22
Identities = 73/260 (28%), Positives = 128/260 (49%)
Query: 14 GYAMSRFEIESEFYDAADTVNQASNSR--SKFKKPLSAL-DHEIAQLTKLKSEPKEHFSK 70
G + ++ D+ + + A + R ++ P+ A D + ++K+ + +
Sbjct: 60 GGGAANLQLIQALSDSEEEHDSAWDGRLGDRYNPPVDATPDTRELEYNEIKTRVELATGR 119
Query: 71 EVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVS 130
G+ S +ML RE RG FS + ++S +LP N D + +A+
Sbjct: 120 LGLGRTAQEHSFPRMLHQRERGLCHRGSFSLGEQSRVMSHFLP-NDLSFTDTYSQKAFCG 178
Query: 131 QFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189
+S DG +F++ Q IR+YD G + K I A+ + W+V D + +PD H +Y+S
Sbjct: 179 IYSKDGQIFMSACQDQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSW 238
Query: 190 SPIVHIVDV-GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248
S +HI + G G + H LD D+ F +FS+ S+DGRE++ G++D
Sbjct: 239 SDYIHICSIYGEG---------DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGAND 286
Query: 249 DCIYVYDLEANKLSLRILAH 268
C+YV+D E N+ +L+I +H
Sbjct: 287 GCLYVFDREQNRRTLQIESH 306
|
|
| UNIPROTKB|F1MVT2 DCAF11 "DDB1- and CUL4-associated factor 11" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 265 (98.3 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 63/191 (32%), Positives = 105/191 (54%)
Query: 80 VSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLF 139
+S +ML RE +G FS + ++S +LP N D + +A+ +S DG +F
Sbjct: 129 LSFPQMLHQRERGLCHQGSFSLGERSRVMSHFLP-NDLGFTDTYSQKAFCGIYSKDGQIF 187
Query: 140 VAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198
++ Q IR+YD G ++ K I A+ + W+V D + +PD H +Y+S S +HI ++
Sbjct: 188 MSACQDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNI 247
Query: 199 -GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
G G + H LD D+ F +FS+ S+DGRE++ G++D C+YV+D E
Sbjct: 248 YGEG---------DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGANDGCLYVFDRE 295
Query: 258 ANKLSLRILAH 268
N+ +L+I +H
Sbjct: 296 QNRRTLQIESH 306
|
|
| UNIPROTKB|Q5E9I8 DCAF11 "DDB1- and CUL4-associated factor 11" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 265 (98.3 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 63/191 (32%), Positives = 105/191 (54%)
Query: 80 VSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLF 139
+S +ML RE +G FS + ++S +LP N D + +A+ +S DG +F
Sbjct: 129 LSFPQMLHQRERGLCHQGSFSLGERSRVMSHFLP-NDLGFTDTYSQKAFCGIYSKDGQIF 187
Query: 140 VAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198
++ Q IR+YD G ++ K I A+ + W+V D + +PD H +Y+S S +HI ++
Sbjct: 188 MSACQDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNI 247
Query: 199 -GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
G G + H LD D+ F +FS+ S+DGRE++ G++D C+YV+D E
Sbjct: 248 YGEG---------DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGANDGCLYVFDRE 295
Query: 258 ANKLSLRILAH 268
N+ +L+I +H
Sbjct: 296 QNRRTLQIESH 306
|
|
| MGI|MGI:90168 Dcaf11 "DDB1 and CUL4 associated factor 11" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 265 (98.3 bits), Expect = 3.5e-22, P = 3.5e-22
Identities = 65/193 (33%), Positives = 104/193 (53%)
Query: 78 LPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS 137
L S +ML RE RG FS + ++S +LP N D + +A+ +S DG
Sbjct: 127 LQQSFPQMLHQRERGLCHRGSFSLGEQSRVMSHFLP-NDLSFTDTYSQKAFCGIYSKDGQ 185
Query: 138 LFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196
+F++ Q IR+YD G + K I A+ + W+V D + +PD H +Y+S S +HI
Sbjct: 186 IFMSACQDQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHIC 245
Query: 197 DV-GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255
++ G G + H LD D+ F +FS+ S+DGRE++ G++D C+YV+D
Sbjct: 246 NIYGEG---------DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGANDGCLYVFD 293
Query: 256 LEANKLSLRILAH 268
E N+ +L+I +H
Sbjct: 294 REQNRRTLQIESH 306
|
|
| ASPGD|ASPL0000074293 AN4800 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 52/148 (35%), Positives = 77/148 (52%)
Query: 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQR 182
++ Y QFS DG+ F + Q ++R+YD WK K + WT+TD +LSPD R
Sbjct: 230 AKCYSGQFSDDGNFFFSCAQDFKVRMYDTSNPYEWKYYKTVDYPLASWTITDATLSPDNR 289
Query: 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD--GGYSFGIFSLKFSTDGR 240
L Y+S+ +V + S + ++ A D G F ++S++FS DGR
Sbjct: 290 FLAYSSLRQLVCLAPTDPAD-SSDPIILDLASSAQRRVARDIFGRDGFAVWSVRFSGDGR 348
Query: 241 ELVAGSSDDCIYVYDLEANKLSLRILAH 268
E+VAG+ D + VYDLE + LRI H
Sbjct: 349 EIVAGTGDHSVIVYDLETRQSVLRIRNH 376
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 279 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-09 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-05 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-04 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 4e-09
Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 23/148 (15%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
FS DG + + + I+++DVE G K + + W V + SPD + +S
Sbjct: 101 FSPDGRILSSSSRDKTIKVWDVETG-KCLTTLRGHT-DW-VNSVAFSPDGTFVASSSQDG 157
Query: 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251
+ + D+ +G H G + S+ FS DG +L++ SSD I
Sbjct: 158 TIKLWDLRTG---KCVATLTGHTG-------------EVNSVAFSPDGEKLLSSSSDGTI 201
Query: 252 YVYDLEANKLSLRILAHTVNIALWITCI 279
++DL K + H + +
Sbjct: 202 KLWDLSTGKCLGTLRGHEN----GVNSV 225
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 8e-07
Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 23/156 (14%)
Query: 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 183
T FS DG L G I+++D+E G ++ V D + S D +
Sbjct: 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG---PVRDVAASADGTY 65
Query: 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243
L S + + D+ +G V + G++ + S+ FS DGR L
Sbjct: 66 LASGSSDKTIRLWDLETGEC-----VRTLT-----------GHTSYVSSVAFSPDGRILS 109
Query: 244 AGSSDDCIYVYDLEANKLSLRILAHTVNIALWITCI 279
+ S D I V+D+E K + HT W+ +
Sbjct: 110 SSSRDKTIKVWDVETGKCLTTLRGHTD----WVNSV 141
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (102), Expect = 5e-05
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 17/150 (11%)
Query: 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 188
VS FS DGSL +G IR++D+ + + + S V + SPD + L S
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS--VLSVAFSPDGKLLASGS 303
Query: 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248
V + D+ +G S+ G+ + SL FS DG LV+G SD
Sbjct: 304 SDGTVRLWDLETGK--------------LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349
Query: 249 D-CIYVYDLEANKLSLRILAHTVNIALWIT 277
D I ++DL K + H+ +++ +
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHSNVLSVSFS 379
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
FS DG ++ I+++D+ G + L V + SPD L S
Sbjct: 185 FSPDGEKLLSSSSDGTIKLWDLSTGKCLG--TLRGHENG-VNSVAFSPDGYLLASGSEDG 241
Query: 192 IVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D+ +G +++L+ T + SL +S DG+ L +GS+D
Sbjct: 242 TIRVWDLRTGECVQTLSGHTN-----------------SVTSLAWSPDGKRLASGSADGT 284
Query: 251 IYVYD 255
I ++D
Sbjct: 285 IRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWITCI 279
G++ G+ + FS DG+ L GS D I V+DLE +L + HT + +
Sbjct: 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVR-DVAAS 60
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.5 bits (88), Expect = 0.003
Identities = 38/151 (25%), Positives = 57/151 (37%), Gaps = 14/151 (9%)
Query: 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179
+ FS DG L ++G I+++D++ G K+ K + SP
Sbjct: 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120
Query: 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 239
D ++ AS S + T L E H + SL FS DG
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE-------------SVTSLAFSPDG 167
Query: 240 RELVAGSSDDC-IYVYDLEANKLSLRILAHT 269
+ L +GSS D I ++DL K + HT
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPLSTLAGHT 198
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 279 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.97 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.96 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.95 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.95 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.95 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.95 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.95 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.94 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.93 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.93 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.92 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.91 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.91 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.91 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.91 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.9 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.9 | |
| PTZ00420 | 568 | coronin; Provisional | 99.9 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.9 | |
| PTZ00421 | 493 | coronin; Provisional | 99.9 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.89 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.89 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.89 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.88 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.87 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.87 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.87 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.86 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.86 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.85 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.85 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.85 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.84 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.84 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.84 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.84 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.83 | |
| PTZ00421 | 493 | coronin; Provisional | 99.83 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.83 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.83 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.83 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.83 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.82 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.82 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.82 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.81 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.81 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.81 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.8 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.8 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.8 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.8 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.8 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.8 | |
| PTZ00420 | 568 | coronin; Provisional | 99.8 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.8 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.8 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.8 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.8 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.8 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.8 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.8 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.8 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.8 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.8 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.79 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.79 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.79 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.79 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.79 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.79 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.78 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.78 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.78 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.77 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.77 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.76 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.76 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.76 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.76 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.75 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.74 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.74 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.74 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.73 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.73 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.73 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.73 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.73 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.72 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.7 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.69 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.69 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.68 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.67 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.67 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.67 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.66 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.66 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.65 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.64 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.64 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.64 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.64 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.64 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.64 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.63 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.62 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.62 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.62 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.61 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.6 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.6 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.6 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.59 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.59 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.59 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.58 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.58 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.57 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.57 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.57 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.57 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.57 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.56 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.56 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.55 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.54 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.53 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.53 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.52 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.52 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.52 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.52 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.52 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.51 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.51 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.5 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.5 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.5 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.5 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.49 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.49 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.48 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.47 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.47 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.47 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.45 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.45 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.45 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.44 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.43 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.43 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.41 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.41 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.4 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.4 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.4 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.38 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.38 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.37 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.36 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.36 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.35 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.35 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.35 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.35 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.32 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.3 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.29 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.29 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.28 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.27 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.26 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.26 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.26 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.25 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.25 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.24 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.23 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.21 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.21 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.19 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.18 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.18 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.18 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.17 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.16 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.15 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.14 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.13 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.12 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.1 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.08 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.08 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.08 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.08 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.07 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.05 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.04 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.03 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.02 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.02 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.01 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.99 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.99 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.99 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.98 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.96 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.93 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.93 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.92 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.92 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.9 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.9 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.9 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.89 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.88 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.87 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.86 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.85 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.85 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.83 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.8 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.79 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.78 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.78 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.78 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.77 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.76 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.74 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.73 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.72 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.69 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.68 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.66 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.65 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.65 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.62 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.62 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.58 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.58 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.57 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.54 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.51 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.48 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.47 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.44 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.41 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.41 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.41 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.39 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.38 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.37 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.35 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.35 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.35 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.34 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.31 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.29 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.29 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.27 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.23 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.17 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.12 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.11 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.1 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.07 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.05 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.0 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.98 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 97.97 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.93 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.92 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.91 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.84 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.83 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.79 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.76 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.76 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.75 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.72 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.68 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.67 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.67 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.66 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.64 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.56 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.56 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.52 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.5 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.49 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.48 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.48 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.47 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.43 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.4 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.39 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.39 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.32 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.29 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.24 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.24 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.17 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.17 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.16 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.12 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.11 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.06 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.02 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.94 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.93 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 96.92 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 96.79 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.77 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.77 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 96.75 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.72 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.7 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.66 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.64 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.61 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.58 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.56 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.44 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.39 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.34 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.32 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.3 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.2 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.16 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.16 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.0 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 95.92 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.8 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.74 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 95.72 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.61 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.6 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 95.58 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.45 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.43 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.43 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 95.39 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.33 | |
| PRK10115 | 686 | protease 2; Provisional | 95.21 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.2 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.19 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 95.19 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.17 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 95.01 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 94.94 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 94.94 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 94.92 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.86 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 94.68 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 94.66 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 94.58 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.58 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 94.46 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.41 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 94.3 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.27 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 94.16 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 94.08 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 94.02 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 93.89 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.89 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 93.86 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.71 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 93.65 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 93.45 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 93.32 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 93.14 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 93.03 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 93.0 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 92.89 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 92.85 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 92.71 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 92.6 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 92.51 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.42 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 92.36 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 92.26 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 92.18 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 91.88 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 91.74 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 91.22 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 90.9 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 90.55 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 90.21 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 89.98 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 89.89 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 89.77 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 89.52 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 89.48 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 89.37 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 89.04 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 88.32 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 88.05 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 87.86 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 87.68 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 87.48 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 87.27 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 87.08 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 86.83 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 86.49 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 86.49 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 86.27 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 86.18 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 86.04 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 85.96 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 85.88 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 85.67 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 84.93 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 84.7 | |
| PRK10115 | 686 | protease 2; Provisional | 83.73 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 83.63 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 83.6 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 83.53 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 82.24 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 81.15 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 80.19 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=203.07 Aligned_cols=192 Identities=21% Similarity=0.254 Sum_probs=159.2
Q ss_pred hhccccC-----ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 023642 85 MLAGREG-----NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG 156 (279)
Q Consensus 85 ~~~~~~~-----~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~ 156 (279)
.+.||.. .|+|+|.. ++.|.++.+|++....+..+.++|...|.|++|+|||+.||+|+.||+|++||..+|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg 189 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG 189 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence 3556654 47887664 577899999999998888999999999999999999999999999999999999999
Q ss_pred eEEeeeeeccCCCcceEEEEECC-----CCCEEEEEeCCCeEEEEECCCCceeeeec-ccc-------ccceeEEeeCCC
Q 023642 157 WKIQKDILAKSLRWTVTDTSLSP-----DQRHLVYASMSPIVHIVDVGSGTMESLAN-VTE-------IHDGLDFSAADD 223 (279)
Q Consensus 157 ~~~~~~~~~~~~~~~v~~~~~sp-----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~-------~~~~~~~~~~~~ 223 (279)
+++.. .+.+|...|++++|.| ..++|++++.||.++|||+..+.+..... ... .-.++.+++..+
T Consensus 190 ~~~g~--~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~D 267 (480)
T KOG0271|consen 190 QQIGR--ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQD 267 (480)
T ss_pred Ccccc--cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCC
Confidence 87655 4689999999999976 56899999999999999998877643222 111 111222222222
Q ss_pred --------------------------------------------------------------------------------
Q 023642 224 -------------------------------------------------------------------------------- 223 (279)
Q Consensus 224 -------------------------------------------------------------------------------- 223 (279)
T Consensus 268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t 347 (480)
T KOG0271|consen 268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT 347 (480)
T ss_pred ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence
Q ss_pred ----------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEee
Q 023642 224 ----------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 224 ----------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
.||..-|+.+.||||++++|++|-|..|++||.++|+.+.+|+||-+.|+.+.++
T Consensus 348 lflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaws 418 (480)
T KOG0271|consen 348 LFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWS 418 (480)
T ss_pred EEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEec
Confidence 5688999999999999999999999999999999999999999999999998764
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-29 Score=202.35 Aligned_cols=166 Identities=18% Similarity=0.172 Sum_probs=145.2
Q ss_pred ccCCCCeee---ccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC
Q 023642 92 NYSGRGRFS---AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL 168 (279)
Q Consensus 92 ~~~~~~~~~---~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (279)
.|.|.|+|. +-|.+-.+|++.+.......+||...|++++|+|||.++++|+.|..-+|||+++|.++-. +.+|
T Consensus 268 afHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~---L~gH 344 (459)
T KOG0272|consen 268 AFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF---LAGH 344 (459)
T ss_pred eecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE---eccc
Confidence 578889984 4466666666666666666899999999999999999999999999999999999987653 5789
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec-CCCEEEEecC
Q 023642 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSS 247 (279)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~t~s~ 247 (279)
..+|.+++|+|+|..||+|+.|++++|||++......... +|..-|+.|+|+| .|.+|+|++.
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip----------------AH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP----------------AHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred ccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc----------------cccchhhheEecccCCeEEEEccc
Confidence 9999999999999999999999999999999877644332 2777999999999 6899999999
Q ss_pred CCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 248 DDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 248 d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
|++++||.-++.++++++.||.+.|-++-
T Consensus 409 D~t~kiWs~~~~~~~ksLaGHe~kV~s~D 437 (459)
T KOG0272|consen 409 DNTVKIWSTRTWSPLKSLAGHEGKVISLD 437 (459)
T ss_pred CcceeeecCCCcccchhhcCCccceEEEE
Confidence 99999999999999999999999998763
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-28 Score=200.07 Aligned_cols=159 Identities=20% Similarity=0.219 Sum_probs=144.7
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.|+++.+|.+........+++|...|..++|+|+|++|++++.|.+-++||+.++..+.. ..+|...|.+++|+|
T Consensus 237 ~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~---QEGHs~~v~~iaf~~ 313 (459)
T KOG0272|consen 237 ASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL---QEGHSKGVFSIAFQP 313 (459)
T ss_pred eccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh---hcccccccceeEecC
Confidence 57799999999988777788999999999999999999999999999999999999865442 579999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
||.++++|+.|..-+|||+++|.++.... +|...|.+|+|+|+|..|+|||.|++++|||++..
T Consensus 314 DGSL~~tGGlD~~~RvWDlRtgr~im~L~----------------gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 314 DGSLAATGGLDSLGRVWDLRTGRCIMFLA----------------GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR 377 (459)
T ss_pred CCceeeccCccchhheeecccCcEEEEec----------------ccccceeeEeECCCceEEeecCCCCcEEEeeeccc
Confidence 99999999999999999999999865432 37779999999999999999999999999999999
Q ss_pred eEEEEEeCCCcceeEEEe
Q 023642 260 KLSLRILAHTVNIALWIT 277 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v~~ 277 (279)
+++.++++|..-|+.|-.
T Consensus 378 ~~ly~ipAH~nlVS~Vk~ 395 (459)
T KOG0272|consen 378 SELYTIPAHSNLVSQVKY 395 (459)
T ss_pred ccceecccccchhhheEe
Confidence 999999999998887754
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=180.77 Aligned_cols=187 Identities=16% Similarity=0.214 Sum_probs=159.6
Q ss_pred CCCCcccchhhhhccccCcc-----CCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCC
Q 023642 74 GKRHLPVSTVKMLAGREGNY-----SGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA 145 (279)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d 145 (279)
......+...++|++|...+ +++.+. ++.|+.+++|+.++..+.+.++-...+|+.++|+|.|+++|.|+-|
T Consensus 39 ~~~~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLd 118 (343)
T KOG0286|consen 39 SVGRIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLD 118 (343)
T ss_pred cceeeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcC
Confidence 34444566778899988764 444443 6789999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCCC--e-EEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCC
Q 023642 146 SQIRIYDVERG--W-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (279)
Q Consensus 146 ~~i~iwd~~~~--~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (279)
+...||++.+. + .......+.+|.+.+.++.|-+ ..+|++++.|.++.+||+++++.... |.
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~-----------f~--- 183 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQV-----------FH--- 183 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEE-----------ec---
Confidence 99999999854 1 2223334689999999999987 56888999999999999999987543 22
Q ss_pred CCCccccEEEEEEec-CCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 223 DGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 223 ~~~~~~~v~~~~~sp-~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
||.+.|.+++++| +++.+++|+-|+..++||++.+.++++|+||..+||+|..
T Consensus 184 --GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~f 237 (343)
T KOG0286|consen 184 --GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRF 237 (343)
T ss_pred --CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEE
Confidence 3778999999999 8999999999999999999999999999999999999853
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=190.18 Aligned_cols=142 Identities=20% Similarity=0.243 Sum_probs=127.3
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
..+.||.++|.|++|+|+|+.|++|+.|.++|+||+.+..+... +.+|...|.+++|+|||+.||+|+.||+|++||
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t---~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT---CKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCccee---ecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34789999999999999999999999999999999998866554 689999999999999999999999999999999
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec-----CCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcce
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-----~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v 272 (279)
.++|+...-. + .+|+.+|++++|.| .+++|++++.|++|+|||+..+.++..+.||+.+|
T Consensus 186 pktg~~~g~~----------l-----~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~V 250 (480)
T KOG0271|consen 186 PKTGQQIGRA----------L-----RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASV 250 (480)
T ss_pred CCCCCccccc----------c-----cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccce
Confidence 9998873211 1 24778999999976 67899999999999999999999999999999999
Q ss_pred eEEEe
Q 023642 273 ALWIT 277 (279)
Q Consensus 273 ~~v~~ 277 (279)
+||-+
T Consensus 251 TCvrw 255 (480)
T KOG0271|consen 251 TCVRW 255 (480)
T ss_pred EEEEE
Confidence 99864
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=176.78 Aligned_cols=176 Identities=20% Similarity=0.172 Sum_probs=147.5
Q ss_pred hhhhccccC-----ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 023642 83 VKMLAGREG-----NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE 154 (279)
Q Consensus 83 ~~~~~~~~~-----~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~ 154 (279)
.+.+.||+. ..+++|.| .+-|+.+++|++........+.+|...|.+++|+||.+++++|+.|++|++|+..
T Consensus 56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~ 135 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL 135 (315)
T ss_pred eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec
Confidence 344566554 35667776 5679999999999988888899999999999999999999999999999999998
Q ss_pred CCeEEeeeeeccCCCcceEEEEECCC--CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEE
Q 023642 155 RGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS 232 (279)
Q Consensus 155 ~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 232 (279)
..... +.. ...++..|.++.|+|+ ..+|++++.|+++++||+++.+..... . ||++.++.
T Consensus 136 g~ck~-t~~-~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~-----------~-----gh~~~v~t 197 (315)
T KOG0279|consen 136 GVCKY-TIH-EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF-----------I-----GHSGYVNT 197 (315)
T ss_pred ccEEE-EEe-cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc-----------c-----cccccEEE
Confidence 76433 321 2233778999999997 688999999999999999998764321 1 37779999
Q ss_pred EEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 233 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 233 ~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+++||||...++|+.|+.+.+||++.++.+..+. |...|++++.
T Consensus 198 ~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~f 241 (315)
T KOG0279|consen 198 VTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCF 241 (315)
T ss_pred EEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEe
Confidence 9999999999999999999999999999988886 7888888875
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-27 Score=203.23 Aligned_cols=175 Identities=21% Similarity=0.252 Sum_probs=156.1
Q ss_pred hhccccC-----ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 023642 85 MLAGREG-----NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG 156 (279)
Q Consensus 85 ~~~~~~~-----~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~ 156 (279)
.+.||.+ .|+|+.+| .+.|.++.+|.+......-...||..+|..+.|+|-|-+||||+.|++.++|..+..
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 3566665 46777776 577899999999888877788999999999999999999999999999999999987
Q ss_pred eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEe
Q 023642 157 WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (279)
Q Consensus 157 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 236 (279)
.+++. +.+|-+.|.+++|+|+..|+++||.|.+|++||+.+|....+. . ||.++|.+++||
T Consensus 526 ~PlRi---faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF-----------~-----GH~~~V~al~~S 586 (707)
T KOG0263|consen 526 KPLRI---FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF-----------T-----GHKGPVTALAFS 586 (707)
T ss_pred Cchhh---hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe-----------c-----CCCCceEEEEEc
Confidence 66654 5799999999999999999999999999999999999986543 2 377899999999
Q ss_pred cCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEee
Q 023642 237 TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 237 p~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
|+|++|++|+.|+.|.+||+.+++.+..+.+|++.|.++-.+
T Consensus 587 p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS 628 (707)
T KOG0263|consen 587 PCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFS 628 (707)
T ss_pred CCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEe
Confidence 999999999999999999999999999999999999998765
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=174.35 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=139.7
Q ss_pred eccccceEeeeeecCCC-----CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEE
Q 023642 100 SAADCCHMLSRYLPVNG-----PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD 174 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~-----~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 174 (279)
++.|..+++|.+...+. ...++||...|..++.++||++.++++.|+.+++||+.++++.+. +.+|...|.+
T Consensus 34 asrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~---f~GH~~dVls 110 (315)
T KOG0279|consen 34 ASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRR---FVGHTKDVLS 110 (315)
T ss_pred cccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEE---EEecCCceEE
Confidence 46788999999876443 345899999999999999999999999999999999999976554 6799999999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC--CCEEEEecCCCeEE
Q 023642 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIY 252 (279)
Q Consensus 175 ~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~t~s~d~~i~ 252 (279)
++|+||.++|++|+.|++|++|++.+......... .++.+|.|+.|+|+ ..++++++.|++|+
T Consensus 111 va~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~---------------~~~~WVscvrfsP~~~~p~Ivs~s~DktvK 175 (315)
T KOG0279|consen 111 VAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED---------------SHREWVSCVRFSPNESNPIIVSASWDKTVK 175 (315)
T ss_pred EEecCCCceeecCCCcceeeeeeecccEEEEEecC---------------CCcCcEEEEEEcCCCCCcEEEEccCCceEE
Confidence 99999999999999999999999987654332211 13569999999998 78999999999999
Q ss_pred EEECCCCeEEEEEeCCCcceeEEEee
Q 023642 253 VYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 253 vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
+||+++.+....+.||++.++.+..+
T Consensus 176 vWnl~~~~l~~~~~gh~~~v~t~~vS 201 (315)
T KOG0279|consen 176 VWNLRNCQLRTTFIGHSGYVNTVTVS 201 (315)
T ss_pred EEccCCcchhhccccccccEEEEEEC
Confidence 99999999999999999999988654
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=170.32 Aligned_cols=179 Identities=19% Similarity=0.209 Sum_probs=155.8
Q ss_pred hhhhhccccCc-----cCCCCee--eccccceEeeeeecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEc
Q 023642 82 TVKMLAGREGN-----YSGRGRF--SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDV 153 (279)
Q Consensus 82 ~~~~~~~~~~~-----~~~~~~~--~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~ 153 (279)
..+.+.+|+.- |..++.+ ++.|.+..+|++........+.+|.+.|.+++++| +++.|++|+-|+..++||+
T Consensus 137 v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~ 216 (343)
T KOG0286|consen 137 VSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDV 216 (343)
T ss_pred eeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeec
Confidence 34566777653 3445554 67888999999999988888999999999999999 9999999999999999999
Q ss_pred CCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEE
Q 023642 154 ERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSL 233 (279)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 233 (279)
+.+.+++. +.+|+..|.++.|.|+|.-+++|+.|+++++||++..+......... -...|+++
T Consensus 217 R~~~c~qt---F~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~--------------~~~gitSv 279 (343)
T KOG0286|consen 217 RSGQCVQT---FEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS--------------IICGITSV 279 (343)
T ss_pred cCcceeEe---ecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc--------------ccCCceeE
Confidence 99988775 67999999999999999999999999999999999988765443222 23489999
Q ss_pred EEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 234 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 234 ~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+||..|++|+.|..|.++.+||.-.++.+..+.||...|.++-.
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~ 323 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGV 323 (343)
T ss_pred EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEE
Confidence 99999999999999999999999999999999999999998854
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-25 Score=193.20 Aligned_cols=180 Identities=21% Similarity=0.310 Sum_probs=150.0
Q ss_pred cccCCccccccccCCCCCcccch-----hhh-----------hcccc-----CccCCCCee---eccccceEeeeeecCC
Q 023642 60 LKSEPKEHFSKEVPGKRHLPVST-----VKM-----------LAGRE-----GNYSGRGRF---SAADCCHMLSRYLPVN 115 (279)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----------~~~~~-----~~~~~~~~~---~~~d~~~~~~~~~~~~ 115 (279)
+.+|...++...+.+.+.+.++- +++ .+||. ..|+|.|-| .+.|++..+|......
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence 56666667777777766655431 111 12222 247888876 5678999999988888
Q ss_pred CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 116 ~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
...++.+|-+.|.|+.|+|+..++++||.|.+||+||+.+|..++. +.+|.++|++++|||+|++|++|+.|+.|++
T Consensus 527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRi---F~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRI---FTGHKGPVTALAFSPCGRYLASGDEDGLIKI 603 (707)
T ss_pred chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEE---ecCCCCceEEEEEcCCCceEeecccCCcEEE
Confidence 8888999999999999999999999999999999999999988765 5799999999999999999999999999999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
||+.++....... +|++.|+++.|+.||..||+|+.|.+|++||+..
T Consensus 604 WDl~~~~~v~~l~----------------~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 604 WDLANGSLVKQLK----------------GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEcCCCcchhhhh----------------cccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999988743221 3778999999999999999999999999999975
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-24 Score=185.71 Aligned_cols=167 Identities=28% Similarity=0.327 Sum_probs=141.8
Q ss_pred ccCCCCee---eccccceEeeeeecCC--CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc-CCCeEEeeeeec
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDV-ERGWKIQKDILA 165 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~ 165 (279)
.|+++|.+ .+.++.+++|...... ....+.+|...|++++|+||++++++++.|++|+|||+ ..+.++.. +
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~---l 242 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKT---L 242 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEE---e
Confidence 56777776 4578888899885555 45557899999999999999999999999999999999 44455544 5
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe
Q 023642 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~ 245 (279)
.+|...|++++|+|+++++++|+.|++|+|||++++++..... +|...|.+++|++++.+|+++
T Consensus 243 ~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~----------------~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 243 KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK----------------GHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee----------------ccCCceEEEEECCCCCEEEEc
Confidence 7999999999999999999999999999999999988754432 277799999999999999999
Q ss_pred cCCCeEEEEECCCCe--EEEEEeCCCcc--eeEEEe
Q 023642 246 SSDDCIYVYDLEANK--LSLRILAHTVN--IALWIT 277 (279)
Q Consensus 246 s~d~~i~vwd~~~~~--~~~~~~~h~~~--v~~v~~ 277 (279)
+.|+.|++||+.++. ++..+.++... ++++..
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~f 342 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQF 342 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEE
Confidence 999999999999999 67888887766 666654
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-23 Score=181.16 Aligned_cols=169 Identities=24% Similarity=0.324 Sum_probs=142.7
Q ss_pred ccCCCCee---eccccceEeeee-ecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC
Q 023642 92 NYSGRGRF---SAADCCHMLSRY-LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS 167 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~-~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 167 (279)
.+++++.+ .+.|.++.+|+. .+.....++.+|...|++++|+|+++++++|+.|++|+|||+.++++... +.+
T Consensus 210 ~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~---l~~ 286 (456)
T KOG0266|consen 210 AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK---LKG 286 (456)
T ss_pred EECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe---eec
Confidence 46777766 577899999999 33455677999999999999999999999999999999999999887765 578
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC
Q 023642 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (279)
Q Consensus 168 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~ 247 (279)
|...|++++|++++++|++++.|+.|++||+.++....... +..... .. .++++.|+|++.++++++.
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~---------~~~~~~--~~-~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL---------LSGAEN--SA-PVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec---------ccCCCC--CC-ceeEEEECCCCcEEEEecC
Confidence 99999999999999999999999999999999998431111 111111 12 6899999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 248 DDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 248 d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
|+.+++||+..+.++..+.+|...+.+.
T Consensus 355 d~~~~~w~l~~~~~~~~~~~~~~~~~~~ 382 (456)
T KOG0266|consen 355 DRTLKLWDLRSGKSVGTYTGHSNLVRCI 382 (456)
T ss_pred CCeEEEEEccCCcceeeecccCCcceeE
Confidence 9999999999999999999998875443
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-24 Score=177.03 Aligned_cols=165 Identities=18% Similarity=0.216 Sum_probs=138.3
Q ss_pred CCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCc
Q 023642 94 SGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW 170 (279)
Q Consensus 94 ~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 170 (279)
+.++.+ +..++.+.+|+............|...|.+++|||....|++++.||+|+|||....+.... +.+|..
T Consensus 147 s~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v---L~GHgw 223 (464)
T KOG0284|consen 147 SHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV---LRGHGW 223 (464)
T ss_pred ccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe---eccCCC
Confidence 455544 23456777777644433333445569999999999999999999999999999987754333 479999
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCe
Q 023642 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (279)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~ 250 (279)
.|.+++|+|...+|++++.|..|++||.+++.++.... +|+..|..+.|+|++++|+|+|.|..
T Consensus 224 dVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh----------------~HKntVl~~~f~~n~N~Llt~skD~~ 287 (464)
T KOG0284|consen 224 DVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH----------------GHKNTVLAVKFNPNGNWLLTGSKDQS 287 (464)
T ss_pred CcceeccCCccceeEEccCCceeEeecCCCcchhhhhh----------------hccceEEEEEEcCCCCeeEEccCCce
Confidence 99999999999999999999999999999999865432 27789999999999999999999999
Q ss_pred EEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 251 IYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 251 i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
++++|+++-+.++++++|+..|+++.+
T Consensus 288 ~kv~DiR~mkEl~~~r~Hkkdv~~~~W 314 (464)
T KOG0284|consen 288 CKVFDIRTMKELFTYRGHKKDVTSLTW 314 (464)
T ss_pred EEEEehhHhHHHHHhhcchhhheeecc
Confidence 999999999999999999999998854
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-23 Score=164.80 Aligned_cols=157 Identities=14% Similarity=0.126 Sum_probs=140.9
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.|.++..|.+...-...++.+|...|..++.+.||..+++++.|.+|++|-+.++++... ++.|+-+|.+++|.|
T Consensus 211 ~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~---lR~hEh~vEci~wap 287 (406)
T KOG0295|consen 211 CSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE---LREHEHPVECIAWAP 287 (406)
T ss_pred cccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh---hhccccceEEEEecc
Confidence 45688999999999988899999999999999999999999999999999999999876554 678888999999988
Q ss_pred C---------------CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEE
Q 023642 180 D---------------QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (279)
Q Consensus 180 ~---------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t 244 (279)
. ++++.+++.|++|++||+.++.+.. ++.+ |..+|..++|+|.|+||++
T Consensus 288 ~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~-----------tL~g-----hdnwVr~~af~p~Gkyi~S 351 (406)
T KOG0295|consen 288 ESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF-----------TLVG-----HDNWVRGVAFSPGGKYILS 351 (406)
T ss_pred cccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE-----------EEec-----ccceeeeeEEcCCCeEEEE
Confidence 5 2489999999999999999998743 2333 5559999999999999999
Q ss_pred ecCCCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 245 GSSDDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 245 ~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
+..|+++++||+++++|+.+++.|...|+++
T Consensus 352 caDDktlrvwdl~~~~cmk~~~ah~hfvt~l 382 (406)
T KOG0295|consen 352 CADDKTLRVWDLKNLQCMKTLEAHEHFVTSL 382 (406)
T ss_pred EecCCcEEEEEeccceeeeccCCCcceeEEE
Confidence 9999999999999999999999999998876
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=154.64 Aligned_cols=182 Identities=16% Similarity=0.142 Sum_probs=142.1
Q ss_pred cCCCCee--eccccceEeeeeecCCC--CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC
Q 023642 93 YSGRGRF--SAADCCHMLSRYLPVNG--PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL 168 (279)
Q Consensus 93 ~~~~~~~--~~~d~~~~~~~~~~~~~--~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (279)
+.+++++ .+....+.++++..... ...+++|+..|+++.|..||+++++|++||+++|||++...+.+. ..|
T Consensus 48 iTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~----~~~ 123 (311)
T KOG0315|consen 48 ITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN----YQH 123 (311)
T ss_pred EcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchh----ccC
Confidence 4555554 34556777888776554 355899999999999999999999999999999999998655443 467
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeee--ccccccceeEEeeCCC-----------------------
Q 023642 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA--NVTEIHDGLDFSAADD----------------------- 223 (279)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~----------------------- 223 (279)
..+|.++..+|+...|++|..+|.|++||+.+..+.... ........+...+++.
T Consensus 124 ~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s 203 (311)
T KOG0315|consen 124 NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS 203 (311)
T ss_pred CCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc
Confidence 789999999999999999999999999999886542221 1111111222222222
Q ss_pred --------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC-eEEEEEeCCCcceeEEEee
Q 023642 224 --------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTVNIALWITC 278 (279)
Q Consensus 224 --------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~-~~~~~~~~h~~~v~~v~~~ 278 (279)
..|.+.+..+.+|||+++|+++|.|.+++||+..+- +....+++|..+++..+.+
T Consensus 204 ~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 204 ELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred cceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec
Confidence 457888999999999999999999999999999987 7778899999998887654
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=155.49 Aligned_cols=169 Identities=21% Similarity=0.206 Sum_probs=136.1
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeee------
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD------ 162 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~------ 162 (279)
+|..+|+. ++.|+.+.+|++..... .....|.++|+++..+|+...|++|.++|.|++||+....+....
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~-qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSC-QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCccc-chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 56677775 67899999999987433 345667799999999999999999999999999999754221111
Q ss_pred ----------------------------------------eeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 163 ----------------------------------------ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 163 ----------------------------------------~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
..+..|++.+..+.+|||+++|++++.|.+++||++.+--
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 1234778889999999999999999999999999998762
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
. .... +. +|..+++.++||.||+||+||+.|+.+++||+..++.+..+.||.....|+.
T Consensus 249 k--le~~--------l~-----gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 249 K--LELV--------LT-----GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVA 307 (311)
T ss_pred e--eEEE--------ee-----cCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEE
Confidence 1 1111 11 2556999999999999999999999999999999999999999988766553
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=165.85 Aligned_cols=202 Identities=16% Similarity=0.204 Sum_probs=154.1
Q ss_pred CCCCcccchhhhhccccCc-----cCCCCee---eccccceEeeeeecCCC---CceeeCCCCCeEEEEECCCCCEEEEE
Q 023642 74 GKRHLPVSTVKMLAGREGN-----YSGRGRF---SAADCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSADGSLFVAG 142 (279)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~d~~~~~~~~~~~~~---~~~l~~h~~~V~~~~~spd~~~l~s~ 142 (279)
+..+.+..+.+++..|... |+++|+| ++.|.+.++|...+... ..++.+|..+|..+.||||.++|+++
T Consensus 208 ~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 208 GRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred CcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec
Confidence 4666677788999998874 7999998 56799999999988666 56789999999999999999999999
Q ss_pred eCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccc-cceeEEeeC
Q 023642 143 FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEI-HDGLDFSAA 221 (279)
Q Consensus 143 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~ 221 (279)
+.|..+.+||+.+|.+..... .++...+.+++|.|||..+++|+.|+.+..||+.+............ ...+....+
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~D 365 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYD 365 (519)
T ss_pred CchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCC
Confidence 999999999999998766532 34567899999999999999999999999999865433211111100 000011111
Q ss_pred CC------------------------------------------------------------------CCccc--cEEEE
Q 023642 222 DD------------------------------------------------------------------GGYSF--GIFSL 233 (279)
Q Consensus 222 ~~------------------------------------------------------------------~~~~~--~v~~~ 233 (279)
+. .||+. -+..-
T Consensus 366 gk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS 445 (519)
T KOG0293|consen 366 GKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS 445 (519)
T ss_pred CcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe
Confidence 10 23332 23333
Q ss_pred EEec-CCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 234 KFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 234 ~~sp-~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+|-- +..++++||+|+.|+||+..+|+++..+.||...||+|.+
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVsw 490 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSW 490 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEec
Confidence 4543 4578899999999999999999999999999999999975
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-23 Score=163.95 Aligned_cols=177 Identities=15% Similarity=0.171 Sum_probs=153.7
Q ss_pred chhhhhccccC-----ccCCCC-ee--eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 023642 81 STVKMLAGREG-----NYSGRG-RF--SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYD 152 (279)
Q Consensus 81 ~~~~~~~~~~~-----~~~~~~-~~--~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd 152 (279)
...+++.+|.. .+.|.. .| ++.|+++.+|++.......++.||-..|..+++|+-..++++++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 34556666664 234433 33 67899999999999988899999999999999999999999999999999999
Q ss_pred cCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEE
Q 023642 153 VERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS 232 (279)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 232 (279)
+...+.++. ..+|-+.|.+++.+|.-..|++|+.|.++++||+++....... . ||...|.+
T Consensus 222 Le~nkvIR~---YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l-----------~-----GH~~~V~~ 282 (460)
T KOG0285|consen 222 LEYNKVIRH---YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL-----------S-----GHTNPVAS 282 (460)
T ss_pred chhhhhHHH---hccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe-----------c-----CCCCccee
Confidence 999876654 5799999999999999999999999999999999997764432 2 37779999
Q ss_pred EEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 233 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 233 ~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
+.+.|....+++||.|++|++||++.|+.+.++..|...|.+++
T Consensus 283 V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~ 326 (460)
T KOG0285|consen 283 VMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALC 326 (460)
T ss_pred EEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEe
Confidence 99999999999999999999999999999999999999998875
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-23 Score=165.11 Aligned_cols=141 Identities=18% Similarity=0.195 Sum_probs=127.2
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 198 (279)
++.+|.++|.|+++.|.+.+|++|+.|++++|||+.+|+.... +.+|...|..+++|+.-.|+++++.|+.|+.||+
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt---ltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT---LTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe---ecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 4789999999999999999999999999999999999976543 5689999999999999999999999999999999
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEee
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
+..+.+.- + .||-+.|++++.+|.-..|+||+.|.+++|||+++...+..+.||..+|.+|...
T Consensus 223 e~nkvIR~-----------Y-----hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 223 EYNKVIRH-----------Y-----HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQ 286 (460)
T ss_pred hhhhhHHH-----------h-----ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEee
Confidence 98775321 1 1377799999999999999999999999999999999999999999999998753
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-22 Score=175.82 Aligned_cols=155 Identities=14% Similarity=0.148 Sum_probs=123.8
Q ss_pred ccceEeeeeecCCCCceeeCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeE-Ee----eeeeccCCCcceEEEE
Q 023642 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWK-IQ----KDILAKSLRWTVTDTS 176 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd-~~~l~s~~~d~~i~iwd~~~~~~-~~----~~~~~~~~~~~v~~~~ 176 (279)
...+.+|+.........+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.++.. .. ....+.+|...|.+++
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa 132 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence 344556655444344568899999999999996 78999999999999999976421 11 1123468889999999
Q ss_pred ECCCCCE-EEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 177 LSPDQRH-LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 177 ~sp~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
|+|++.. |++++.|++|+|||+++++...... |...|.+++|+|+|.+|++++.|+.|+|||
T Consensus 133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-----------------~~~~V~SlswspdG~lLat~s~D~~IrIwD 195 (568)
T PTZ00420 133 WNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-----------------MPKKLSSLKWNIKGNLLSGTCVGKHMHIID 195 (568)
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-----------------cCCcEEEEEECCCCCEEEEEecCCEEEEEE
Confidence 9999876 5789999999999999887532211 223799999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCcceeE
Q 023642 256 LEANKLSLRILAHTVNIAL 274 (279)
Q Consensus 256 ~~~~~~~~~~~~h~~~v~~ 274 (279)
+++++.+.++.+|.+.+.+
T Consensus 196 ~Rsg~~i~tl~gH~g~~~s 214 (568)
T PTZ00420 196 PRKQEIASSFHIHDGGKNT 214 (568)
T ss_pred CCCCcEEEEEecccCCcee
Confidence 9999999999999886543
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-22 Score=165.19 Aligned_cols=158 Identities=19% Similarity=0.227 Sum_probs=136.1
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.|.++.+..+-...+..++.+|.++|.++.|+|.+.+|++++.|++++||......+.+. +..|...|..+.|+|
T Consensus 335 s~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~---l~~Hskei~t~~wsp 411 (524)
T KOG0273|consen 335 SSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHD---LQAHSKEIYTIKWSP 411 (524)
T ss_pred cCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhh---hhhhccceeeEeecC
Confidence 34566777788777777888999999999999999999999999999999999887766665 678998999999999
Q ss_pred CC---------CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCe
Q 023642 180 DQ---------RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (279)
Q Consensus 180 ~~---------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~ 250 (279)
+| ..|++++.|.+|++||+..+.+..... . |..+|++++|+|+|+++++|+.|+.
T Consensus 412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~-----------k-----H~~pVysvafS~~g~ylAsGs~dg~ 475 (524)
T KOG0273|consen 412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM-----------K-----HQEPVYSVAFSPNGRYLASGSLDGC 475 (524)
T ss_pred CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec-----------c-----CCCceEEEEecCCCcEEEecCCCCe
Confidence 76 379999999999999999998865432 2 6669999999999999999999999
Q ss_pred EEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 251 IYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 251 i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
|.+|+.++++.++.+.+. +.|..|.+
T Consensus 476 V~iws~~~~~l~~s~~~~-~~Ifel~W 501 (524)
T KOG0273|consen 476 VHIWSTKTGKLVKSYQGT-GGIFELCW 501 (524)
T ss_pred eEeccccchheeEeecCC-CeEEEEEE
Confidence 999999999999999863 44666554
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=171.48 Aligned_cols=139 Identities=17% Similarity=0.123 Sum_probs=117.6
Q ss_pred ceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEE----eeeeeccCCCcceEEEEECCCC-CEEEEEeCCC
Q 023642 118 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSP 191 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~ 191 (279)
..+.+|.+.|++++|+| ++++|++|+.|++|++||+.++... .....+.+|...|.+++|+|++ .+|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 35789999999999999 8899999999999999999765211 1123457899999999999986 6899999999
Q ss_pred eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcc
Q 023642 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVN 271 (279)
Q Consensus 192 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~ 271 (279)
+|+|||+.+++..... . +|...|.+++|+|+|.+|++++.|++|++||+++++.+.++.+|.+.
T Consensus 149 tVrIWDl~tg~~~~~l-----------~-----~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~ 212 (493)
T PTZ00421 149 VVNVWDVERGKAVEVI-----------K-----CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212 (493)
T ss_pred EEEEEECCCCeEEEEE-----------c-----CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence 9999999987653221 1 25568999999999999999999999999999999999999999765
Q ss_pred e
Q 023642 272 I 272 (279)
Q Consensus 272 v 272 (279)
+
T Consensus 213 ~ 213 (493)
T PTZ00421 213 K 213 (493)
T ss_pred c
Confidence 3
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.5e-22 Score=171.72 Aligned_cols=160 Identities=17% Similarity=0.193 Sum_probs=128.4
Q ss_pred cceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCE
Q 023642 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 183 (279)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 183 (279)
+.+.+|.+....-.....+|...+++++++|||+++|+|+.||+|+|||..++-|... +..|+..|+++.|+.+|+.
T Consensus 330 gQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT---FteHts~Vt~v~f~~~g~~ 406 (893)
T KOG0291|consen 330 GQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVT---FTEHTSGVTAVQFTARGNV 406 (893)
T ss_pred ceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEE---eccCCCceEEEEEEecCCE
Confidence 4678898877776667789999999999999999999999999999999999988765 6799999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceeeeeccccccc--ee--------EEeeCCC------------------CCccccEEEEEE
Q 023642 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHD--GL--------DFSAADD------------------GGYSFGIFSLKF 235 (279)
Q Consensus 184 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~--------~~~~~~~------------------~~~~~~v~~~~~ 235 (279)
+++.+.||+|+.||+...+.-.......... .+ .+.+..+ .||.++|.+++|
T Consensus 407 llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f 486 (893)
T KOG0291|consen 407 LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSF 486 (893)
T ss_pred EEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEE
Confidence 9999999999999998766532222221111 01 1111111 789999999999
Q ss_pred ecCCCEEEEecCCCeEEEEECCCC-eEEEEEe
Q 023642 236 STDGRELVAGSSDDCIYVYDLEAN-KLSLRIL 266 (279)
Q Consensus 236 sp~g~~l~t~s~d~~i~vwd~~~~-~~~~~~~ 266 (279)
+|++..|+++|.|.+|++||+-.. ..+.+++
T Consensus 487 ~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~ 518 (893)
T KOG0291|consen 487 SPDGSLLASGSWDKTVRIWDIFSSSGTVETLE 518 (893)
T ss_pred ccccCeEEeccccceEEEEEeeccCceeeeEe
Confidence 999999999999999999998643 2334443
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=175.71 Aligned_cols=159 Identities=16% Similarity=0.217 Sum_probs=140.1
Q ss_pred eccccceEeeeeecCC---CCc------eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCc
Q 023642 100 SAADCCHMLSRYLPVN---GPW------PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW 170 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~---~~~------~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 170 (279)
.+.|+++.+|.+.... .+. +...|...|++++++|+.+++|+||+|++.+||+++...... .+.+|+.
T Consensus 430 vS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~---vLsGH~R 506 (775)
T KOG0319|consen 430 VSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLG---VLSGHTR 506 (775)
T ss_pred ecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEE---EeeCCcc
Confidence 6789999999886521 122 236899999999999999999999999999999999765544 3689999
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCe
Q 023642 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (279)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~ 250 (279)
.|+++.|+|..+.++++|.|++|+||.+.+..+... |.+ |...|..+.|-.+|+.|++++.||-
T Consensus 507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT-----------~eG-----H~~aVlra~F~~~~~qliS~~adGl 570 (775)
T KOG0319|consen 507 GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKT-----------FEG-----HTSAVLRASFIRNGKQLISAGADGL 570 (775)
T ss_pred ceEEEEeccccceeEeccCCceEEEEEeccceeeee-----------ecC-----ccceeEeeeeeeCCcEEEeccCCCc
Confidence 999999999999999999999999999999887542 333 6679999999999999999999999
Q ss_pred EEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 251 IYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 251 i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
|++|++++++|+.++.+|.+.|+++..
T Consensus 571 iKlWnikt~eC~~tlD~H~DrvWaL~~ 597 (775)
T KOG0319|consen 571 IKLWNIKTNECEMTLDAHNDRVWALSV 597 (775)
T ss_pred EEEEeccchhhhhhhhhccceeEEEee
Confidence 999999999999999999999999874
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=150.62 Aligned_cols=146 Identities=19% Similarity=0.299 Sum_probs=123.0
Q ss_pred ceeeCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeE-EeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 118 WPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWK-IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd-~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
..+.+|.+++..++|+|- |..|++++.|+.|++|+...+.. ..+...-.+|+..|++++|+|.|++|++++.|.++.|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 457899999999999997 88999999999999999985322 2222334578999999999999999999999999999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC---CeEEEEEeCCCcce
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---NKLSLRILAHTVNI 272 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~---~~~~~~~~~h~~~v 272 (279)
|.-..++..+... +. ||...|-+++|+++|.+|||+++|+.|-||.+.. -+++..++.|.+.|
T Consensus 88 w~k~~~efecv~~---------lE-----GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 88 WKKEDGEFECVAT---------LE-----GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV 153 (312)
T ss_pred eecCCCceeEEee---------ee-----ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc
Confidence 9888776554332 22 3556999999999999999999999999999974 35889999999999
Q ss_pred eEEEe
Q 023642 273 ALWIT 277 (279)
Q Consensus 273 ~~v~~ 277 (279)
..|++
T Consensus 154 K~V~W 158 (312)
T KOG0645|consen 154 KHVIW 158 (312)
T ss_pred cEEEE
Confidence 98875
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=167.78 Aligned_cols=191 Identities=19% Similarity=0.174 Sum_probs=148.7
Q ss_pred hhhhccccCccCCCCee---------eccccceEeeeeec-CCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 023642 83 VKMLAGREGNYSGRGRF---------SAADCCHMLSRYLP-VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYD 152 (279)
Q Consensus 83 ~~~~~~~~~~~~~~~~~---------~~~d~~~~~~~~~~-~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd 152 (279)
...+.+|..+++....| .+.|+.+.+|+++. .....++.+|..+|.+++|+++|..|.+++.|+.|++||
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD 286 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD 286 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence 34567777665443322 57899999999998 455677999999999999999999999999999999999
Q ss_pred cCCCeEEeeeeeccCCCcceEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeee-eccccccceeEEeeCCC-------
Q 023642 153 VERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESL-ANVTEIHDGLDFSAADD------- 223 (279)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~------- 223 (279)
+++|++...+. ....+.++.|+||+ +.+++|+.|+.|+.||+++++...- -........+.|...+.
T Consensus 287 tETG~~~~~f~----~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 287 TETGQVLSRFH----LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred cccceEEEEEe----cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99998887632 23368999999998 7889999999999999999886211 11111222223322222
Q ss_pred ----------------------------------------------------------------CCcc--ccEEEEEEec
Q 023642 224 ----------------------------------------------------------------GGYS--FGIFSLKFST 237 (279)
Q Consensus 224 ----------------------------------------------------------------~~~~--~~v~~~~~sp 237 (279)
.||. +.-..+.|||
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 4453 4456789999
Q ss_pred CCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 238 ~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
||.+|++|+.||.+.+||.++-+.+.++++|.+.+..+.+
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~w 482 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDW 482 (503)
T ss_pred CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEe
Confidence 9999999999999999999999999999999888776643
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-23 Score=164.56 Aligned_cols=167 Identities=20% Similarity=0.258 Sum_probs=145.2
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCc--------eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEe
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPW--------PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ 160 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~--------~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~ 160 (279)
.|+|+|.| ++.|+.+-+|++....... .+--+.+.|.|+.||.|...|++|+.||+|++|.+.+|.|++
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR 299 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR 299 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH
Confidence 58999998 5778999999988754332 245678999999999999999999999999999999999988
Q ss_pred eeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC
Q 023642 161 KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240 (279)
Q Consensus 161 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 240 (279)
++ .+.|...|+++.|+.|+..+++++.|.++++--++.|++..- | .||++.|+...|++||.
T Consensus 300 rF--drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKE-----------f-----rGHsSyvn~a~ft~dG~ 361 (508)
T KOG0275|consen 300 RF--DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKE-----------F-----RGHSSYVNEATFTDDGH 361 (508)
T ss_pred Hh--hhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHH-----------h-----cCccccccceEEcCCCC
Confidence 74 358888999999999999999999999999999999987432 1 24778999999999999
Q ss_pred EEEEecCCCeEEEEECCCCeEEEEEe--CCCcceeEEE
Q 023642 241 ELVAGSSDDCIYVYDLEANKLSLRIL--AHTVNIALWI 276 (279)
Q Consensus 241 ~l~t~s~d~~i~vwd~~~~~~~~~~~--~h~~~v~~v~ 276 (279)
++++++.|++|+||+.++.+|+.+++ +..-+|++++
T Consensus 362 ~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~ 399 (508)
T KOG0275|consen 362 HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVI 399 (508)
T ss_pred eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEE
Confidence 99999999999999999999999997 4556777775
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=152.86 Aligned_cols=165 Identities=17% Similarity=0.192 Sum_probs=139.8
Q ss_pred ccCCCCee---eccccceEeeeeec-CCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLP-VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS 167 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~-~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 167 (279)
.|.|+|.+ ++.|+.+.+|+... -+..+.+++|.+.|+.+.|.+|++.+++++.|.+|+.||+++|++..+ .+.
T Consensus 54 ~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk---~k~ 130 (338)
T KOG0265|consen 54 KFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK---HKG 130 (338)
T ss_pred EECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh---hcc
Confidence 35666655 46788999999665 556678999999999999999999999999999999999999988876 578
Q ss_pred CCcceEEEEECCCCC-EEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 168 LRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 168 ~~~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
|..-|..+.-+.-|. ++.+++.|+++++||++......... ....++++.|..++..+.+|+
T Consensus 131 h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-----------------~kyqltAv~f~d~s~qv~sgg 193 (338)
T KOG0265|consen 131 HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-----------------NKYQLTAVGFKDTSDQVISGG 193 (338)
T ss_pred ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-----------------cceeEEEEEecccccceeecc
Confidence 888888888544554 46788999999999999877643321 223799999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 247 SDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 247 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
-|+.|++||++.+..+.++.||.+.|+.+-
T Consensus 194 Idn~ikvWd~r~~d~~~~lsGh~DtIt~ls 223 (338)
T KOG0265|consen 194 IDNDIKVWDLRKNDGLYTLSGHADTITGLS 223 (338)
T ss_pred ccCceeeeccccCcceEEeecccCceeeEE
Confidence 999999999999999999999999999875
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=145.44 Aligned_cols=163 Identities=14% Similarity=0.069 Sum_probs=132.9
Q ss_pred eccccceEeeeeecCCCCce----e-eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEE
Q 023642 100 SAADCCHMLSRYLPVNGPWP----V-DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD 174 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~----l-~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 174 (279)
.+.|+.+++|....... +. + .+|+..|.+++|+|.|++|++|+.|.++.||.-..+... ....+.+|+..|.+
T Consensus 33 cg~Dk~vriw~~~~~~s-~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efe-cv~~lEGHEnEVK~ 110 (312)
T KOG0645|consen 33 CGTDKAVRIWSTSSGDS-WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFE-CVATLEGHENEVKC 110 (312)
T ss_pred ecCCceEEEEecCCCCc-EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCcee-EEeeeeccccceeE
Confidence 46788888888764221 22 2 579999999999999999999999999999987765322 22346799999999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEE
Q 023642 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (279)
Q Consensus 175 ~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vw 254 (279)
++|+++|++||+++.|+.|.||.+..+.......... .|++.|-.+.|+|...+|+++|.|++|++|
T Consensus 111 Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-------------~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~ 177 (312)
T KOG0645|consen 111 VAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-------------EHTQDVKHVIWHPTEDLLFSCSYDNTIKVY 177 (312)
T ss_pred EEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-------------cccccccEEEEcCCcceeEEeccCCeEEEE
Confidence 9999999999999999999999998666533332222 277799999999999999999999999999
Q ss_pred ECC---CCeEEEEEeCCCcceeEEEe
Q 023642 255 DLE---ANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 255 d~~---~~~~~~~~~~h~~~v~~v~~ 277 (279)
+-. .-.++++|.+|...|.++..
T Consensus 178 ~~~~dddW~c~~tl~g~~~TVW~~~F 203 (312)
T KOG0645|consen 178 RDEDDDDWECVQTLDGHENTVWSLAF 203 (312)
T ss_pred eecCCCCeeEEEEecCccceEEEEEe
Confidence 876 24689999999998888753
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=156.55 Aligned_cols=177 Identities=21% Similarity=0.216 Sum_probs=136.9
Q ss_pred ccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC
Q 023642 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 180 (279)
+.|.++....--|-.-...+..|..-|+++.|+|||.+|++++.|+++.+||=.+|+.+..+....+|.+.|.+++|+||
T Consensus 167 sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD 246 (603)
T KOG0318|consen 167 SDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD 246 (603)
T ss_pred cCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC
Confidence 34444443332222223446789999999999999999999999999999999999888775555689999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeccccc----cceeEEe--------eCCC---------------CCccccEEEE
Q 023642 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEI----HDGLDFS--------AADD---------------GGYSFGIFSL 233 (279)
Q Consensus 181 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~--------~~~~---------------~~~~~~v~~~ 233 (279)
+..+++++.|.+++|||+.+..+......... .-++.+. -.+. .||...|+++
T Consensus 247 s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaL 326 (603)
T KOG0318|consen 247 STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITAL 326 (603)
T ss_pred CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEE
Confidence 99999999999999999998876443332221 1122221 0000 7899999999
Q ss_pred EEecCCCEEEEecCCCeEEEEECCCCeEEEEE-eCCCcceeEEEe
Q 023642 234 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTVNIALWIT 277 (279)
Q Consensus 234 ~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~v~~ 277 (279)
+.+|++++|++|+.||.|.-||+.+|..-... ++|...|.++.+
T Consensus 327 tv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~ 371 (603)
T KOG0318|consen 327 TVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAA 371 (603)
T ss_pred EEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEee
Confidence 99999999999999999999999988765444 678888877754
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=154.39 Aligned_cols=162 Identities=15% Similarity=0.127 Sum_probs=132.3
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeee-----------------
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD----------------- 162 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~----------------- 162 (279)
+..++..++|+. +......+..|.++|.++.|+.+|.+|++++.|+++.+||..++.....+
T Consensus 253 G~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~ 331 (524)
T KOG0273|consen 253 GSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE 331 (524)
T ss_pred eecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCce
Confidence 445666676764 33344568899999999999999999999999999999999776443321
Q ss_pred ---------------------eeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeC
Q 023642 163 ---------------------ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (279)
Q Consensus 163 ---------------------~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 221 (279)
..+.+|.+.|.++.|.|.|.+|++++.|++++||............
T Consensus 332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~------------- 398 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ------------- 398 (524)
T ss_pred EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh-------------
Confidence 1234789999999999999999999999999999987655432211
Q ss_pred CCCCccccEEEEEEecCC---------CEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEee
Q 023642 222 DDGGYSFGIFSLKFSTDG---------RELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 222 ~~~~~~~~v~~~~~sp~g---------~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
.|+..|+.+.|+|+| ..+++++.|++|++||+..+.++.+|..|..+|.+|..+
T Consensus 399 ---~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS 461 (524)
T KOG0273|consen 399 ---AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFS 461 (524)
T ss_pred ---hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEec
Confidence 277789999999965 478899999999999999999999999999999998753
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-22 Score=162.69 Aligned_cols=158 Identities=13% Similarity=0.153 Sum_probs=131.2
Q ss_pred cccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCC
Q 023642 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 181 (279)
.-+..-+|+...-.-..++..|.++|.++.|++++.++++|+.+|.|++|+..-... .. ....|...|++++|+|..
T Consensus 116 ~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~--~~ahh~eaIRdlafSpnD 192 (464)
T KOG0284|consen 116 QSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV-KI--IQAHHAEAIRDLAFSPND 192 (464)
T ss_pred ccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-HH--hhHhhhhhhheeccCCCC
Confidence 334455666655555566889999999999999999999999999999999875422 11 123444789999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeE
Q 023642 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (279)
Q Consensus 182 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~ 261 (279)
..+++++.|++|+|||....+..... . ||...|.++.|+|....++++|.|..|++||-++|.|
T Consensus 193 skF~t~SdDg~ikiWdf~~~kee~vL-----------~-----GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~c 256 (464)
T KOG0284|consen 193 SKFLTCSDDGTIKIWDFRMPKEERVL-----------R-----GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSC 256 (464)
T ss_pred ceeEEecCCCeEEEEeccCCchhhee-----------c-----cCCCCcceeccCCccceeEEccCCceeEeecCCCcch
Confidence 99999999999999999887764332 1 3666999999999999999999999999999999999
Q ss_pred EEEEeCCCcceeEEEee
Q 023642 262 SLRILAHTVNIALWITC 278 (279)
Q Consensus 262 ~~~~~~h~~~v~~v~~~ 278 (279)
+.++.+|+..|..+..+
T Consensus 257 l~tlh~HKntVl~~~f~ 273 (464)
T KOG0284|consen 257 LATLHGHKNTVLAVKFN 273 (464)
T ss_pred hhhhhhccceEEEEEEc
Confidence 99999999999888653
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-21 Score=146.22 Aligned_cols=179 Identities=21% Similarity=0.212 Sum_probs=149.9
Q ss_pred cCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR 169 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 169 (279)
|..+|.| .+.|+++.+|+........+..+|...|..++.+.|+..|++++.|..+.+||+.+|+..++ +++|.
T Consensus 25 yN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr---~rgH~ 101 (307)
T KOG0316|consen 25 YNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRR---FRGHL 101 (307)
T ss_pred EccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeee---ccccc
Confidence 4556665 57899999999998888888999999999999999999999999999999999999988876 68999
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecccccccee---EEeeC------CC---------------CC
Q 023642 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAA------DD---------------GG 225 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~------~~---------------~~ 225 (279)
+.|..++|+.+...+++|+.|.++++||.+.....+++.......++ ....| .+ +-
T Consensus 102 aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy 181 (307)
T KOG0316|consen 102 AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDY 181 (307)
T ss_pred ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhh
Confidence 99999999999999999999999999999987766555444333322 11111 11 11
Q ss_pred ccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeE
Q 023642 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIAL 274 (279)
Q Consensus 226 ~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (279)
...+|++++|++|++.++.++.|+++++.|-.+|+.++.+.||...-..
T Consensus 182 ~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eyk 230 (307)
T KOG0316|consen 182 FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYK 230 (307)
T ss_pred cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceee
Confidence 2458999999999999999999999999999999999999999875433
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-21 Score=164.02 Aligned_cols=159 Identities=16% Similarity=0.228 Sum_probs=139.7
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
++.|..+.+.++.+.+....+++|.+-|.+++.+|...++++++.|-.|++||.+.++.... .+.+|...|.+++|.|
T Consensus 73 GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q--tfeGH~HyVMqv~fnP 150 (794)
T KOG0276|consen 73 GSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ--TFEGHEHYVMQVAFNP 150 (794)
T ss_pred ecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee--EEcCcceEEEEEEecC
Confidence 56777888899999999999999999999999999999999999999999999998876555 3578888999999999
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec--CCCEEEEecCCCeEEEEEC
Q 023642 180 -DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 180 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~t~s~d~~i~vwd~ 256 (279)
|.+.+++++.|++|++|.+....... ++.+ |...|+|+.|-+ |.++|+||+.|.+|+|||.
T Consensus 151 kD~ntFaS~sLDrTVKVWslgs~~~nf-----------Tl~g-----HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDy 214 (794)
T KOG0276|consen 151 KDPNTFASASLDRTVKVWSLGSPHPNF-----------TLEG-----HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDY 214 (794)
T ss_pred CCccceeeeeccccEEEEEcCCCCCce-----------eeec-----cccCcceEEeccCCCcceEEecCCCceEEEeec
Confidence 67899999999999999997655432 2333 566999999976 4579999999999999999
Q ss_pred CCCeEEEEEeCCCcceeEEE
Q 023642 257 EANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 257 ~~~~~~~~~~~h~~~v~~v~ 276 (279)
.+..|++++.||.+.|+.+.
T Consensus 215 Qtk~CV~TLeGHt~Nvs~v~ 234 (794)
T KOG0276|consen 215 QTKSCVQTLEGHTNNVSFVF 234 (794)
T ss_pred chHHHHHHhhcccccceEEE
Confidence 99999999999999998875
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=143.60 Aligned_cols=159 Identities=14% Similarity=0.169 Sum_probs=132.9
Q ss_pred eccccceEeeeeecCCCC-ceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE
Q 023642 100 SAADCCHMLSRYLPVNGP-WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~-~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (279)
.+.|+++.+|++-....| ..++.|...|.++.|++ ++..+++++.|++|++|+...+..+.+ +.+|...|...+|
T Consensus 79 a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~T---f~gh~~~Iy~a~~ 155 (311)
T KOG0277|consen 79 ASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQT---FNGHNSCIYQAAF 155 (311)
T ss_pred EecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEe---ecCCccEEEEEec
Confidence 567899999997665555 45899999999999999 666788889999999999998877665 6799999999999
Q ss_pred CC-CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec-CCCEEEEecCCCeEEEEE
Q 023642 178 SP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 178 sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~t~s~d~~i~vwd 255 (279)
+| .++.+++++.|+++++||++.......... |...|.++.|+. +...|+||+.|+.|+.||
T Consensus 156 sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a----------------h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD 219 (311)
T KOG0277|consen 156 SPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA----------------HNSEILCCDWSKYNHNVLATGGVDNLVRGWD 219 (311)
T ss_pred CCCCCCeEEEccCCceEEEEEecCCCceeEEEe----------------ccceeEeecccccCCcEEEecCCCceEEEEe
Confidence 99 678999999999999999987543211111 666899999986 567899999999999999
Q ss_pred CCC-CeEEEEEeCCCcceeEEEe
Q 023642 256 LEA-NKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 256 ~~~-~~~~~~~~~h~~~v~~v~~ 277 (279)
++. ..++..+.+|.-.|+.|..
T Consensus 220 ir~~r~pl~eL~gh~~AVRkvk~ 242 (311)
T KOG0277|consen 220 IRNLRTPLFELNGHGLAVRKVKF 242 (311)
T ss_pred hhhccccceeecCCceEEEEEec
Confidence 987 5688999999999888764
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=161.75 Aligned_cols=177 Identities=15% Similarity=0.191 Sum_probs=140.4
Q ss_pred hhhccccCcc-----CCCCee---eccccceEeeeeecCCCC----ceeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEE
Q 023642 84 KMLAGREGNY-----SGRGRF---SAADCCHMLSRYLPVNGP----WPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRI 150 (279)
Q Consensus 84 ~~~~~~~~~~-----~~~~~~---~~~d~~~~~~~~~~~~~~----~~l~~h~~~V~~~~~spd~-~~l~s~~~d~~i~i 150 (279)
+++.||+..+ ...|.+ .+.|+++++|++...... ....+|+..|.+++++..+ .+|+++|.|.++++
T Consensus 359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 3567776643 233433 577999999999443332 2358999999999998744 68899999999999
Q ss_pred EEcCCCeEEee------eeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCC
Q 023642 151 YDVERGWKIQK------DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224 (279)
Q Consensus 151 wd~~~~~~~~~------~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (279)
|++...+.... ......|...|.+++.+|+..+||+||.|++.+||++........ +++
T Consensus 439 W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v-----------LsG---- 503 (775)
T KOG0319|consen 439 WDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV-----------LSG---- 503 (775)
T ss_pred ecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEE-----------eeC----
Confidence 99986321111 113367888999999999999999999999999999996665432 333
Q ss_pred CccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 225 ~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
|+..|+++.|+|..+.++|+|.|.+|+||.+.+..|+++|.||...|.-+.
T Consensus 504 -H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~ 554 (775)
T KOG0319|consen 504 -HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRAS 554 (775)
T ss_pred -CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeee
Confidence 666999999999999999999999999999999999999999999886543
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=161.50 Aligned_cols=159 Identities=23% Similarity=0.268 Sum_probs=133.4
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee-----
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI----- 163 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~----- 163 (279)
.++|+|++ ++.|+++.+|+....-...++..|++.|+.+.|+..|+.+++++-||+|+.||+......+.+.
T Consensus 357 ~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~ 436 (893)
T KOG0291|consen 357 AYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI 436 (893)
T ss_pred EECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce
Confidence 47889887 5679999999988777778899999999999999999999999999999999997653332211
Q ss_pred ------------------------------------eccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCC--ceee
Q 023642 164 ------------------------------------LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG--TMES 205 (279)
Q Consensus 164 ------------------------------------~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~--~~~~ 205 (279)
.+.+|++||.+++|+|++..|++++.|++|++||+-.. +...
T Consensus 437 QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEt 516 (893)
T KOG0291|consen 437 QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVET 516 (893)
T ss_pred eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeee
Confidence 23499999999999999999999999999999998654 3322
Q ss_pred eeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
+. +...+..++|+|||+.|+++..||.|.+||+..+..+.++.|-
T Consensus 517 l~------------------i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idgr 561 (893)
T KOG0291|consen 517 LE------------------IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGR 561 (893)
T ss_pred Ee------------------eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccch
Confidence 21 3348999999999999999999999999999988877777653
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=150.49 Aligned_cols=188 Identities=21% Similarity=0.221 Sum_probs=144.1
Q ss_pred CccCCCCee---eccccceEeeeeecCCCCceee---CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee-
Q 023642 91 GNYSGRGRF---SAADCCHMLSRYLPVNGPWPVD---QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI- 163 (279)
Q Consensus 91 ~~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~---~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~- 163 (279)
..|+|+|.+ .+.|+.+.+++-...+....+. +|.+.|++++|+||++.|++++.|.+++|||+.+..++.+..
T Consensus 196 VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~ 275 (603)
T KOG0318|consen 196 VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPM 275 (603)
T ss_pred EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeec
Confidence 357888876 5678899888877666666666 899999999999999999999999999999998764443321
Q ss_pred ---------------------------------------eccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee
Q 023642 164 ---------------------------------------LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (279)
Q Consensus 164 ---------------------------------------~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~ 204 (279)
...+|...|+++..+||+.+|++|+.||.|.-||..++..-
T Consensus 276 ~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 276 GSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred CCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 12388889999999999999999999999999999876653
Q ss_pred eeec--cccc-------c-ceeEEeeCCC---------------------------------------------------
Q 023642 205 SLAN--VTEI-------H-DGLDFSAADD--------------------------------------------------- 223 (279)
Q Consensus 205 ~~~~--~~~~-------~-~~~~~~~~~~--------------------------------------------------- 223 (279)
.+.. .... . ..+...+-.+
T Consensus 356 ~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~ 435 (603)
T KOG0318|consen 356 RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQT 435 (603)
T ss_pred ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCC
Confidence 2210 0000 0 0000000000
Q ss_pred ------------------------------------------------CCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 224 ------------------------------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 224 ------------------------------------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
..|.+.|++++||||+.+|+++...+.+.+||
T Consensus 436 ~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd 515 (603)
T KOG0318|consen 436 KVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYD 515 (603)
T ss_pred cceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEE
Confidence 34889999999999999999999999999999
Q ss_pred CCCCeEE-EEEeCCCcceeEEEee
Q 023642 256 LEANKLS-LRILAHTVNIALWITC 278 (279)
Q Consensus 256 ~~~~~~~-~~~~~h~~~v~~v~~~ 278 (279)
+.+.+.. ..+.-|+..|+++.++
T Consensus 516 ~~s~~~~~~~w~FHtakI~~~aWs 539 (603)
T KOG0318|consen 516 VASREVKTNRWAFHTAKINCVAWS 539 (603)
T ss_pred cccCceecceeeeeeeeEEEEEeC
Confidence 9988763 3344599999999874
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-20 Score=148.29 Aligned_cols=175 Identities=12% Similarity=0.161 Sum_probs=141.3
Q ss_pred hhhccccCc-----cCCCCee---eccccceEeeeeecC-CCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 023642 84 KMLAGREGN-----YSGRGRF---SAADCCHMLSRYLPV-NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE 154 (279)
Q Consensus 84 ~~~~~~~~~-----~~~~~~~---~~~d~~~~~~~~~~~-~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~ 154 (279)
..++||+.+ +...|++ .+.|-...+|++... +....+.+|...|.++.|-|-|.++++++.|.+|+.|++.
T Consensus 144 ~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~ 223 (406)
T KOG0295|consen 144 RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD 223 (406)
T ss_pred hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecc
Confidence 456666664 3334443 233444666766553 2234478999999999999999999999999999999999
Q ss_pred CCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEE
Q 023642 155 RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK 234 (279)
Q Consensus 155 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 234 (279)
++.++.. +.+|...|.-++.+.||..+++++.|.++++|-+.++++....+. |..+|-+++
T Consensus 224 tg~cv~t---~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~----------------hEh~vEci~ 284 (406)
T KOG0295|consen 224 TGYCVKT---FPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELRE----------------HEHPVECIA 284 (406)
T ss_pred cceeEEe---ccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhc----------------cccceEEEE
Confidence 9998876 678988999999999999999999999999999999876433221 555788888
Q ss_pred Eec---------------CCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 235 FST---------------DGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 235 ~sp---------------~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
|-| .++++++++.|++|++||+.+|.++.++.||..+|..+..
T Consensus 285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af 342 (406)
T KOG0295|consen 285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAF 342 (406)
T ss_pred ecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEE
Confidence 866 1368999999999999999999999999999999998764
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-20 Score=158.45 Aligned_cols=159 Identities=11% Similarity=0.084 Sum_probs=133.0
Q ss_pred eccccceEeeeeecC-CCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE
Q 023642 100 SAADCCHMLSRYLPV-NGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~-~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (279)
++.|-.+.+|++... ...++++||+.-|++++|+| |.+.|++++-|++|++|.+.+..+..+ +.+|...|.++.+
T Consensus 115 sSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT---l~gHekGVN~Vdy 191 (794)
T KOG0276|consen 115 SSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT---LEGHEKGVNCVDY 191 (794)
T ss_pred cCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee---eeccccCcceEEe
Confidence 456667788887653 44577999999999999999 889999999999999999988755443 5699999999999
Q ss_pred CC--CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 178 SP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 178 sp--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
-| |..+|++|+.|.+++|||..+..+.... .||..-|..+.|+|.-++++||++||+++||+
T Consensus 192 y~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL----------------eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 192 YTGGDKPYLISGADDLTIKVWDYQTKSCVQTL----------------EGHTNNVSFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred ccCCCcceEEecCCCceEEEeecchHHHHHHh----------------hcccccceEEEecCCCcEEEEecCCccEEEec
Confidence 87 4479999999999999999998874322 14777999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCcceeEEEe
Q 023642 256 LEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 256 ~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
..|-+...++.-.-..|+|+.+
T Consensus 256 s~Ty~lE~tLn~gleRvW~I~~ 277 (794)
T KOG0276|consen 256 SKTYKLEKTLNYGLERVWCIAA 277 (794)
T ss_pred CcceehhhhhhcCCceEEEEee
Confidence 9987777777666667776653
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.6e-20 Score=147.37 Aligned_cols=176 Identities=16% Similarity=0.188 Sum_probs=135.9
Q ss_pred eccccceEeeeeecCCCCce----eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-----e-------------
Q 023642 100 SAADCCHMLSRYLPVNGPWP----VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-----W------------- 157 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~----l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~-----~------------- 157 (279)
.+.|+++.+|.+........ -.||...|-+++..++|..+++|+.|..|+||+.... +
T Consensus 165 as~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~ 244 (423)
T KOG0313|consen 165 ASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKRE 244 (423)
T ss_pred ecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhh
Confidence 57899999999887655422 3599999999999999999999999999999993211 0
Q ss_pred ----EEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEee--------CCC--
Q 023642 158 ----KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA--------ADD-- 223 (279)
Q Consensus 158 ----~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--------~~~-- 223 (279)
.......+.+|..+|.++.|++ ...+++++.|.+|+.||+.++..............+.+.+ ..+
T Consensus 245 ~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~ 323 (423)
T KOG0313|consen 245 KEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRH 323 (423)
T ss_pred hcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCc
Confidence 0012245679999999999988 7789999999999999999888743332222111111111 111
Q ss_pred ------------------CCccccEEEEEEecCCC-EEEEecCCCeEEEEECCCCe-EEEEEeCCCcceeEEE
Q 023642 224 ------------------GGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANK-LSLRILAHTVNIALWI 276 (279)
Q Consensus 224 ------------------~~~~~~v~~~~~sp~g~-~l~t~s~d~~i~vwd~~~~~-~~~~~~~h~~~v~~v~ 276 (279)
-+|+.+|.++.|+|... +|++++.|+++++||+++.+ ++..+.+|.+.|-++-
T Consensus 324 irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vd 396 (423)
T KOG0313|consen 324 IRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVD 396 (423)
T ss_pred eeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEe
Confidence 56889999999999765 57899999999999999877 9999999999988764
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.2e-21 Score=151.63 Aligned_cols=155 Identities=19% Similarity=0.188 Sum_probs=126.0
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
+..|.++.+|+........++.||++.|.|+.| +.+.+++|+.|.+|++||..+++++.. +-+|...|..+.|+
T Consensus 213 GlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~t---lihHceaVLhlrf~- 286 (499)
T KOG0281|consen 213 GLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNT---LIHHCEAVLHLRFS- 286 (499)
T ss_pred ccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhH---HhhhcceeEEEEEe-
Confidence 456889999998888888889999999999999 457999999999999999999998876 45788889999996
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
..++++++.|.++.+||+.......+..... ||...|+.+.|+ .+++++++.|.+|++|++.++
T Consensus 287 -ng~mvtcSkDrsiaVWdm~sps~it~rrVLv-------------GHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~ 350 (499)
T KOG0281|consen 287 -NGYMVTCSKDRSIAVWDMASPTDITLRRVLV-------------GHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC 350 (499)
T ss_pred -CCEEEEecCCceeEEEeccCchHHHHHHHHh-------------hhhhheeeeccc--cceEEEecCCceEEEEeccce
Confidence 4599999999999999998765433333322 366678877775 558888888888888888888
Q ss_pred eEEEEEeCCCcceeEEE
Q 023642 260 KLSLRILAHTVNIALWI 276 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v~ 276 (279)
+++.++.||+..|.|+.
T Consensus 351 efvRtl~gHkRGIAClQ 367 (499)
T KOG0281|consen 351 EFVRTLNGHKRGIACLQ 367 (499)
T ss_pred eeehhhhcccccceehh
Confidence 88888888888776653
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-21 Score=153.72 Aligned_cols=171 Identities=19% Similarity=0.208 Sum_probs=140.7
Q ss_pred hhhhccccCccC---CCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 023642 83 VKMLAGREGNYS---GRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG 156 (279)
Q Consensus 83 ~~~~~~~~~~~~---~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~ 156 (279)
.+.+.||.+.+. -+.++ ++.|.++++|++.+.+...++.+|.+.|..+.|+. .++++++.|.++.+||+...
T Consensus 230 ~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sp 307 (499)
T KOG0281|consen 230 LKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASP 307 (499)
T ss_pred HHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCc
Confidence 356777776531 11122 57899999999999998899999999999999964 79999999999999999876
Q ss_pred eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEe
Q 023642 157 WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (279)
Q Consensus 157 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 236 (279)
..+.....+.+|...|..+.| |.++|++++.|.+|++|++.+++...... +|.-.|.|+.+
T Consensus 308 s~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~----------------gHkRGIAClQY- 368 (499)
T KOG0281|consen 308 TDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLN----------------GHKRGIACLQY- 368 (499)
T ss_pred hHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhh----------------cccccceehhc-
Confidence 543333456799999999999 45699999999999999999988754322 26668888776
Q ss_pred cCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 237 TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 237 p~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
.|+++++|+.|.+|++||+..|.++..++||..-|.++
T Consensus 369 -r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRci 406 (499)
T KOG0281|consen 369 -RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 406 (499)
T ss_pred -cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhhe
Confidence 48999999999999999999999999999999888775
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=149.88 Aligned_cols=184 Identities=16% Similarity=0.172 Sum_probs=144.7
Q ss_pred cCCCCee--ec-cccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC------CeEEeeee
Q 023642 93 YSGRGRF--SA-ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER------GWKIQKDI 163 (279)
Q Consensus 93 ~~~~~~~--~~-~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~------~~~~~~~~ 163 (279)
.++.|.| ++ ..+.+.+|.+-.+....++.+|-..|+++.|+-||.+|++|++||.|.+|++-. ........
T Consensus 89 s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~ 168 (476)
T KOG0646|consen 89 SSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH 168 (476)
T ss_pred cCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee
Confidence 4556665 34 568899999988887788899999999999999999999999999999998732 11222334
Q ss_pred eccCCCcceEEEEECCCC--CEEEEEeCCCeEEEEECCCCceeeeeccccccceeE--------EeeCCC----------
Q 023642 164 LAKSLRWTVTDTSLSPDQ--RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLD--------FSAADD---------- 223 (279)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--------~~~~~~---------- 223 (279)
.+..|.-+|+++...+-| ..|+++|.|.++++||+..+..............+. |.+...
T Consensus 169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~ 248 (476)
T KOG0646|consen 169 IFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFK 248 (476)
T ss_pred eeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhc
Confidence 467899999999987754 579999999999999999988754444333322221 111111
Q ss_pred -----------------------CCccc--cEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 224 -----------------------GGYSF--GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 224 -----------------------~~~~~--~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
.||.+ .|+|++.+-||..|++|+.||.|+|||+.+.++++++....++|+.+.
T Consensus 249 ~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~ 326 (476)
T KOG0646|consen 249 LSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQ 326 (476)
T ss_pred CCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeE
Confidence 56777 999999999999999999999999999999999999887777887664
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-18 Score=152.26 Aligned_cols=174 Identities=17% Similarity=0.155 Sum_probs=126.0
Q ss_pred eccccceEeeeeecCC-------CCceeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcc
Q 023642 100 SAADCCHMLSRYLPVN-------GPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT 171 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~-------~~~~l~~h~~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 171 (279)
++.|+.+.+|++.... ....+.+|...|.+++|+|++ ++|++|+.|++|+|||+.++..... +..|...
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~---l~~h~~~ 170 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEV---IKCHSDQ 170 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEE---EcCCCCc
Confidence 5678999999986532 234578999999999999975 6999999999999999999866543 4678889
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecc-ccc---------cceeEEe-eC---CC--------------
Q 023642 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV-TEI---------HDGLDFS-AA---DD-------------- 223 (279)
Q Consensus 172 v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~---------~~~~~~~-~~---~~-------------- 223 (279)
|.+++|+|+|.+|++++.|++|++||+++++....... ... .....+. +. .+
T Consensus 171 V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p 250 (493)
T PTZ00421 171 ITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP 250 (493)
T ss_pred eEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc
Confidence 99999999999999999999999999998775322211 000 0011111 10 00
Q ss_pred -----CCccccEEEEEEecCCCEEEEec-CCCeEEEEECCCCeEEEEEeC-CCcceeEEE
Q 023642 224 -----GGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILA-HTVNIALWI 276 (279)
Q Consensus 224 -----~~~~~~v~~~~~sp~g~~l~t~s-~d~~i~vwd~~~~~~~~~~~~-h~~~v~~v~ 276 (279)
..+...+....|++++.+|++++ .|+.|++||+.+++++..+.. +..++..+.
T Consensus 251 ~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~ 310 (493)
T PTZ00421 251 YSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLC 310 (493)
T ss_pred eeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceE
Confidence 01123455567899999998887 599999999999988776654 333444443
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-21 Score=159.43 Aligned_cols=145 Identities=20% Similarity=0.224 Sum_probs=127.5
Q ss_pred ecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCC-CeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC
Q 023642 112 LPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (279)
Q Consensus 112 ~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 189 (279)
.|......+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +.+++. +.+|..+|.+++|+++|..+++++.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt---f~gH~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT---FKGHRKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh---hhcchhhhhhhhccccCCeeeeeec
Confidence 35555567899999999999999 899999999999999999876 666665 6799999999999999999999999
Q ss_pred CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCC-CEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 190 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
|+.+++||+++|++....... ..++|+.|.||+ +.+++|+.|+.|+.||+++++.++.+..|
T Consensus 279 D~~lKlwDtETG~~~~~f~~~-----------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h 341 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFHLD-----------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH 341 (503)
T ss_pred ceeeeeeccccceEEEEEecC-----------------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh
Confidence 999999999999986543321 278999999998 78889999999999999999999999999
Q ss_pred CcceeEEE
Q 023642 269 TVNIALWI 276 (279)
Q Consensus 269 ~~~v~~v~ 276 (279)
-+.|+.+.
T Consensus 342 Lg~i~~i~ 349 (503)
T KOG0282|consen 342 LGAILDIT 349 (503)
T ss_pred hhheeeeE
Confidence 98888765
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.9e-19 Score=136.68 Aligned_cols=161 Identities=16% Similarity=0.147 Sum_probs=128.0
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeec--------------
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-------------- 165 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------- 165 (279)
.+.|...-+|.-.+.+..-++.||++.|+|++.+-+.+.+++|+.|.++++||+.+|+++......
T Consensus 28 caKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~ 107 (327)
T KOG0643|consen 28 CAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNL 107 (327)
T ss_pred ecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcE
Confidence 356788889998888888889999999999999999999999999999999999999766532110
Q ss_pred ------------------------------------cCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecc
Q 023642 166 ------------------------------------KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (279)
Q Consensus 166 ------------------------------------~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 209 (279)
..+.+.++.+-|.|-+.+|++|..||.|.+||+++|.... ..
T Consensus 108 ~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v--~s 185 (327)
T KOG0643|consen 108 ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELV--DS 185 (327)
T ss_pred EEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceee--ec
Confidence 0223456677777777788888888888888888776521 11
Q ss_pred ccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
. .-|...|+.+.|+||..+++|++.|.+.++||+++-++++++.. ..+||+.+
T Consensus 186 ~-------------~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aa 238 (327)
T KOG0643|consen 186 D-------------EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAA 238 (327)
T ss_pred h-------------hhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-ccccccee
Confidence 1 12777999999999999999999999999999999999999874 45666543
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-19 Score=145.62 Aligned_cols=160 Identities=16% Similarity=0.125 Sum_probs=133.9
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.|..+.+|..-....+..+..|.++|+.+..+|.|.+|++++.|+...+.|++++..+...... ...-.+++.+|||
T Consensus 279 aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 279 ASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHP 357 (506)
T ss_pred cCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeEcC
Confidence 466778888988777788889999999999999999999999999999999999999877654322 2334589999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
||..|.+|..|+.++|||+.++..... |. +|.++|..++|+.+|-||++++.|+.|++||++..
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~~~a~-----------Fp-----ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQTNVAK-----------FP-----GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred CceEEeccCCCceEEEEEcCCcccccc-----------CC-----CCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence 999999999999999999998775321 11 37889999999999999999999999999999998
Q ss_pred eEEEEEeCCC-cceeEEE
Q 023642 260 KLSLRILAHT-VNIALWI 276 (279)
Q Consensus 260 ~~~~~~~~h~-~~v~~v~ 276 (279)
+..+++.-.. ..|+++.
T Consensus 422 ~n~kt~~l~~~~~v~s~~ 439 (506)
T KOG0289|consen 422 KNFKTIQLDEKKEVNSLS 439 (506)
T ss_pred cccceeeccccccceeEE
Confidence 8888887432 3555543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-19 Score=157.45 Aligned_cols=180 Identities=16% Similarity=0.149 Sum_probs=143.3
Q ss_pred cCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR 169 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 169 (279)
|.+.+.+ ++.|-.+.+|++.......++.||.+.|..+.|++.-.+++++|.|.+|+||+..+++++.. +.+|.
T Consensus 59 FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iav---ltGHn 135 (1202)
T KOG0292|consen 59 FHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAV---LTGHN 135 (1202)
T ss_pred ecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEE---EecCc
Confidence 4444443 45677888999998888889999999999999999999999999999999999999988765 57888
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecc--------------------------ccccc----eeEEe
Q 023642 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV--------------------------TEIHD----GLDFS 219 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--------------------------~~~~~----~~~~~ 219 (279)
..|.+..|+|....++++|.|-+|++||+.+-+....... .++|+ .+.|.
T Consensus 136 HYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh 215 (1202)
T KOG0292|consen 136 HYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH 215 (1202)
T ss_pred eEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec
Confidence 8999999999999999999999999999975443221111 01111 11121
Q ss_pred eC--------CC-------------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcce
Q 023642 220 AA--------DD-------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272 (279)
Q Consensus 220 ~~--------~~-------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v 272 (279)
++ .+ .||...|.++-|+|....+++.|+|++|+|||+...+.+++++...+.-
T Consensus 216 pTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRF 295 (1202)
T KOG0292|consen 216 PTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRF 295 (1202)
T ss_pred CCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeE
Confidence 11 11 7899999999999999999999999999999999999999997555544
Q ss_pred eEE
Q 023642 273 ALW 275 (279)
Q Consensus 273 ~~v 275 (279)
+.+
T Consensus 296 W~l 298 (1202)
T KOG0292|consen 296 WIL 298 (1202)
T ss_pred EEE
Confidence 444
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.1e-19 Score=135.82 Aligned_cols=174 Identities=13% Similarity=0.122 Sum_probs=138.1
Q ss_pred eccccceEeeeeecCCC--CceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEE
Q 023642 100 SAADCCHMLSRYLPVNG--PWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~--~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 176 (279)
++.|+++.+|++..... .....+|.+.|-.++|+| ...+|++++.|.+|++||++++++...+. ..+.-.-+.
T Consensus 38 gs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~----~~~eni~i~ 113 (313)
T KOG1407|consen 38 GSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE----TKGENINIT 113 (313)
T ss_pred cccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee----ccCcceEEE
Confidence 56788999999887643 345789999999999998 67799999999999999999998877632 222345689
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC-------------------------CCccccEE
Q 023642 177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD-------------------------GGYSFGIF 231 (279)
Q Consensus 177 ~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~v~ 231 (279)
|+|+|.+++.++.|..|...|.++.+.............+.+...++ +.|.....
T Consensus 114 wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCi 193 (313)
T KOG1407|consen 114 WSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCI 193 (313)
T ss_pred EcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceE
Confidence 99999999999999999999999877643333322222222221111 56888899
Q ss_pred EEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 232 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 232 ~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
|+.|+|+|++||+|+.|..+.+||+..--|+..+..+.-+|+.+-.
T Consensus 194 cI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSF 239 (313)
T KOG1407|consen 194 CIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSF 239 (313)
T ss_pred EEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEe
Confidence 9999999999999999999999999988889999888888887754
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-19 Score=139.74 Aligned_cols=130 Identities=21% Similarity=0.233 Sum_probs=108.6
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 198 (279)
.+.+|.+.|+.+.|+|+|.+|++|+.|..|.+|+...... ......+|.+.|..+.|.+|++.|++++.|++++.||+
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 4789999999999999999999999999999999764321 22335799999999999999999999999999999999
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEE-EecCCCeEEEEECCCCeEEEEEe
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
++|+.....+ +|..-|+.+.-+.-|..|+ +++.|+++++||+++..++++++
T Consensus 120 ~tG~~~rk~k----------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~ 172 (338)
T KOG0265|consen 120 ETGKRIRKHK----------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE 172 (338)
T ss_pred ccceeeehhc----------------cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc
Confidence 9999854322 2666888888555566555 77889999999999888877774
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=139.29 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=127.2
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
++.|+...+|+..+......+.+|.+.|+++.||.||.+||+|+-+|.|+||...++.....+. ..-..+.=+.|+|
T Consensus 82 GGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~---~e~~dieWl~WHp 158 (399)
T KOG0296|consen 82 GGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD---QEVEDIEWLKWHP 158 (399)
T ss_pred cCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee---cccCceEEEEecc
Confidence 4678888999998888777799999999999999999999999999999999999986655432 2223477789999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
.+..|+.|+.||.+.+|.+.++....+ +. ||..++++=.|.|+|+.++++..|++|++||.+++
T Consensus 159 ~a~illAG~~DGsvWmw~ip~~~~~kv-----------~~-----Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 159 RAHILLAGSTDGSVWMWQIPSQALCKV-----------MS-----GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG 222 (399)
T ss_pred cccEEEeecCCCcEEEEECCCcceeeE-----------ec-----CCCCCcccccccCCCceEEEEecCceEEEEecCCC
Confidence 999999999999999999988543222 22 36679999999999999999999999999999999
Q ss_pred eEEEEEe
Q 023642 260 KLSLRIL 266 (279)
Q Consensus 260 ~~~~~~~ 266 (279)
+++.++.
T Consensus 223 ~p~~~~~ 229 (399)
T KOG0296|consen 223 QPLHKIT 229 (399)
T ss_pred ceeEEec
Confidence 9999987
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-18 Score=136.16 Aligned_cols=175 Identities=15% Similarity=0.129 Sum_probs=139.8
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCC--EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS--LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (279)
++.|.++.++++........+..|.+.|+++.|.|.-. .|++|+.||.|.+|+.....++.. ++.|.+.|+.++.
T Consensus 59 GssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s---lK~H~~~Vt~lsi 135 (362)
T KOG0294|consen 59 GSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS---LKAHKGQVTDLSI 135 (362)
T ss_pred cCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee---ecccccccceeEe
Confidence 56788999998887777778999999999999999765 899999999999999988765554 6789889999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC----------------------------------
Q 023642 178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD---------------------------------- 223 (279)
Q Consensus 178 sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 223 (279)
+|.+++.++.+.|+.+++||+-+|+.............+.|.+.++
T Consensus 136 HPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~ 215 (362)
T KOG0294|consen 136 HPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCAT 215 (362)
T ss_pred cCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeee
Confidence 9999999999999999999999888765555544444445554443
Q ss_pred ------------------------------CCccccEEEEEE--ecCCCEEEEecCCCeEEEEECCCC-----eEEEEEe
Q 023642 224 ------------------------------GGYSFGIFSLKF--STDGRELVAGSSDDCIYVYDLEAN-----KLSLRIL 266 (279)
Q Consensus 224 ------------------------------~~~~~~v~~~~~--sp~g~~l~t~s~d~~i~vwd~~~~-----~~~~~~~ 266 (279)
.+|...|-++.+ .|++.+|+|+|.||.|+|||++.. +.+..+.
T Consensus 216 ~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n 295 (362)
T KOG0294|consen 216 FLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELN 295 (362)
T ss_pred ecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEee
Confidence 458888888885 467889999999999999999865 3444444
Q ss_pred CCCcceeEEEee
Q 023642 267 AHTVNIALWITC 278 (279)
Q Consensus 267 ~h~~~v~~v~~~ 278 (279)
- ...++|+..|
T Consensus 296 ~-~~RltCl~~~ 306 (362)
T KOG0294|consen 296 T-NVRLTCLRVK 306 (362)
T ss_pred c-CCccceeeeh
Confidence 2 4555665544
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.81 E-value=8e-18 Score=137.81 Aligned_cols=159 Identities=23% Similarity=0.246 Sum_probs=134.2
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.++.+.+|++........+..|...+..+.|+|+++++++++.|+.|++||+..++.... +..|...+.++.|+|
T Consensus 27 ~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~---~~~~~~~i~~~~~~~ 103 (289)
T cd00200 27 GSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT---LTGHTSYVSSVAFSP 103 (289)
T ss_pred eecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEE---EeccCCcEEEEEEcC
Confidence 34578889999887766677889999999999999999999999999999999998755443 347777899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
+++++++++.|+.+++||+.+++...... .|...+.+++|+|++.++++++.++.|++||++++
T Consensus 104 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 167 (289)
T cd00200 104 DGRILSSSSRDKTIKVWDVETGKCLTTLR----------------GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG 167 (289)
T ss_pred CCCEEEEecCCCeEEEEECCCcEEEEEec----------------cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc
Confidence 98899988889999999999766533221 14558999999999999998888999999999999
Q ss_pred eEEEEEeCCCcceeEEEe
Q 023642 260 KLSLRILAHTVNIALWIT 277 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v~~ 277 (279)
+++..+..|...|.++..
T Consensus 168 ~~~~~~~~~~~~i~~~~~ 185 (289)
T cd00200 168 KCVATLTGHTGEVNSVAF 185 (289)
T ss_pred ccceeEecCccccceEEE
Confidence 999999999888887654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-19 Score=154.83 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=110.7
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC-CCCEEEEEeCCCeEEEEEC
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~ 198 (279)
+.||.+.|..+.||.+ ++|++++.|.+||+|++....|+.. -.|...|++++|+| |.+|+++|+.|+.|+||++
T Consensus 365 f~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~----F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI 439 (712)
T KOG0283|consen 365 FKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKV----FSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSI 439 (712)
T ss_pred hhccchhheecccccC-CeeEeccccccEEeecCCCcceeeE----EecCCeeEEEEecccCCCcEeecccccceEEeec
Confidence 5799999999999975 6899999999999999999988875 37888999999999 8899999999999999999
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
...++....... .-|++++|.|||++.+.|+.+|..++|+....+....+.
T Consensus 440 ~d~~Vv~W~Dl~-----------------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 440 SDKKVVDWNDLR-----------------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred CcCeeEeehhhh-----------------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 998876554432 279999999999999999999999999998877666554
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=138.52 Aligned_cols=139 Identities=19% Similarity=0.210 Sum_probs=122.6
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~ 196 (279)
...+..|++.|++++.+|+.+++++|+.|..-.+|++.++.... .+.+|+..|+++.|+-||.+||+|+.+|.|+||
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 34688999999999999999999999999999999999997544 367999999999999999999999999999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeE
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIAL 274 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (279)
+..++........ --..+.-+.|+|.+.+|+.|+.||.+.+|.+.++...+.+.||..++++
T Consensus 134 ~~stg~~~~~~~~----------------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~ 195 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQ----------------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTC 195 (399)
T ss_pred EcccCceEEEeec----------------ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccc
Confidence 9999887543320 0126778999999999999999999999999998899999999988765
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-18 Score=132.23 Aligned_cols=157 Identities=18% Similarity=0.196 Sum_probs=136.1
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~ 196 (279)
+..+.||.-+++.+.++.+|.+|++++.|.++.+|-...|+.+.. ..+|.+.|++++...+.+.+++|+.|.++++|
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGt---y~GHtGavW~~Did~~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGT---YDGHTGAVWCCDIDWDSKHLITGSADQTAKLW 79 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeee---ecCCCceEEEEEecCCcceeeeccccceeEEE
Confidence 456889999999999999999999999999999999888877665 67999999999999999999999999999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCC-------------------------------------CCccccEEEEEEecCC
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADD-------------------------------------GGYSFGIFSLKFSTDG 239 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~v~~~~~sp~g 239 (279)
|+++|++....+.......+.|...+. ..+...++.+-|.|-+
T Consensus 80 Dv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~ 159 (327)
T KOG0643|consen 80 DVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG 159 (327)
T ss_pred EcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence 999999987777666666666665554 1244678899999999
Q ss_pred CEEEEecCCCeEEEEECCCCe-EEEEEeCCCcceeEEE
Q 023642 240 RELVAGSSDDCIYVYDLEANK-LSLRILAHTVNIALWI 276 (279)
Q Consensus 240 ~~l~t~s~d~~i~vwd~~~~~-~~~~~~~h~~~v~~v~ 276 (279)
++|++|..||.|..||+++|+ .+...+-|...|+.+.
T Consensus 160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q 197 (327)
T KOG0643|consen 160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQ 197 (327)
T ss_pred CEEEEecCCCcEEEEEcccCceeeechhhhcccccccc
Confidence 999999999999999999984 5566678888888764
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-18 Score=134.96 Aligned_cols=168 Identities=16% Similarity=0.147 Sum_probs=125.5
Q ss_pred ccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC
Q 023642 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 182 (279)
|.++.+-.+....-...+.||...|++++.+|-+..+++++.|++|++||++..++..... .. .-..++|.|+|-
T Consensus 79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~-~~----~~pi~AfDp~GL 153 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN-LS----GRPIAAFDPEGL 153 (311)
T ss_pred CCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe-cC----CCcceeECCCCc
Confidence 5556655666666667789999999999999998999999999999999999776654321 11 234579999999
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeec--c----ccccceeEEeeCCC-------------------------CCcc---c
Q 023642 183 HLVYASMSPIVHIVDVGSGTMESLAN--V----TEIHDGLDFSAADD-------------------------GGYS---F 228 (279)
Q Consensus 183 ~l~~~~~d~~i~i~d~~~~~~~~~~~--~----~~~~~~~~~~~~~~-------------------------~~~~---~ 228 (279)
++|++.....|++||++.-..-+... . ......+.|++++. .++. .
T Consensus 154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~ 233 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN 233 (311)
T ss_pred EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC
Confidence 99999988899999998743211111 1 11223455666654 0111 1
Q ss_pred cEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC-CCcceeEE
Q 023642 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTVNIALW 275 (279)
Q Consensus 229 ~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~-h~~~v~~v 275 (279)
.-...+|+||++++++|+.||+|++|++++|..+..+.+ +..++.++
T Consensus 234 ~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~ 281 (311)
T KOG1446|consen 234 LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCV 281 (311)
T ss_pred cceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCcccc
Confidence 125778999999999999999999999999999999998 56666554
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-18 Score=151.60 Aligned_cols=155 Identities=20% Similarity=0.184 Sum_probs=133.8
Q ss_pred eccccceEeeeeecCCCCce-eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 100 SAADCCHMLSRYLPVNGPWP-VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~-l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
.+.+..+.+|+..+...... +.+|.+.|.++++..-+.++++|+.|.++++||..+|.|... +.+|...|.++...
T Consensus 224 ~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~---l~gh~stv~~~~~~ 300 (537)
T KOG0274|consen 224 GSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS---LQGHTSSVRCLTID 300 (537)
T ss_pred cCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE---ecCCCceEEEEEcc
Confidence 34455666888877776666 899999999999988789999999999999999999998876 56899888888774
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 179 p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
+ ..+++|+.|.+|++|++.++....+.. +|..+|.++..+ +.++++|+.|++|+|||+.+
T Consensus 301 ~--~~~~sgs~D~tVkVW~v~n~~~l~l~~----------------~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~ 360 (537)
T KOG0274|consen 301 P--FLLVSGSRDNTVKVWDVTNGACLNLLR----------------GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT 360 (537)
T ss_pred C--ceEeeccCCceEEEEeccCcceEEEec----------------cccccEEEEEec--CCEEEEEecCceEEEEEhhh
Confidence 4 578889999999999999988765443 266799999987 88999999999999999999
Q ss_pred CeEEEEEeCCCcceeEEEe
Q 023642 259 NKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 259 ~~~~~~~~~h~~~v~~v~~ 277 (279)
++++.++.||...|.+++.
T Consensus 361 ~~cl~sl~gH~~~V~sl~~ 379 (537)
T KOG0274|consen 361 GKCLKSLSGHTGRVYSLIV 379 (537)
T ss_pred ceeeeeecCCcceEEEEEe
Confidence 9999999999999999753
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=149.43 Aligned_cols=162 Identities=14% Similarity=0.156 Sum_probs=137.1
Q ss_pred eccccceEeeeeecCC--CCceeeCCCCCeEEEEE-CCCCCEEEEEeCCCcEEEEEcCCCeE--E------eeeeeccCC
Q 023642 100 SAADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQF-SADGSLFVAGFQASQIRIYDVERGWK--I------QKDILAKSL 168 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~-spd~~~l~s~~~d~~i~iwd~~~~~~--~------~~~~~~~~~ 168 (279)
.+.|.++.+|+..... ...++..|.+.|.|++. .++..++|+|+-|+.|.+||+.++.. + .......++
T Consensus 91 ~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~ 170 (735)
T KOG0308|consen 91 ASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP 170 (735)
T ss_pred ecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence 4678899999987764 34568999999999999 88999999999999999999997722 1 111112377
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC
Q 023642 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d 248 (279)
..+|.+++..|.|..|++|+..+.+++||.++++.... +. ||+.-|..+-.++||+.++++|.|
T Consensus 171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk-----------Lr-----GHTdNVr~ll~~dDGt~~ls~sSD 234 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK-----------LR-----GHTDNVRVLLVNDDGTRLLSASSD 234 (735)
T ss_pred ccceeeeecCCcceEEEecCcccceEEeccccccceee-----------ee-----ccccceEEEEEcCCCCeEeecCCC
Confidence 88999999999999999999999999999999876322 22 366699999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 249 DCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 249 ~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
++|++||+...+|++++..|...|+++..
T Consensus 235 gtIrlWdLgqQrCl~T~~vH~e~VWaL~~ 263 (735)
T KOG0308|consen 235 GTIRLWDLGQQRCLATYIVHKEGVWALQS 263 (735)
T ss_pred ceEEeeeccccceeeeEEeccCceEEEee
Confidence 99999999999999999999999998753
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=142.93 Aligned_cols=145 Identities=15% Similarity=0.142 Sum_probs=118.9
Q ss_pred eeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCe----EEeeeeeccCCCcceEEEEECC-CCCEEEEEeCCCe
Q 023642 119 PVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGW----KIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPI 192 (279)
Q Consensus 119 ~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~ 192 (279)
.|.+|.+.-++++|++ ..-.|++|+.|++|++||+.... .+.....+.+|...|..++|+| +..++++++.|+.
T Consensus 172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~ 251 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK 251 (422)
T ss_pred EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence 6899999889999999 45578999999999999997542 2444456789999999999999 5567899999999
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEecCCCeEEEEECCC-CeEEEEEeCCCc
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEA-NKLSLRILAHTV 270 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s~d~~i~vwd~~~-~~~~~~~~~h~~ 270 (279)
+.|||++++... .... .++|.+.|+|++|+|- +..|||||.|++|.+||+|. .+++.++.+|..
T Consensus 252 L~iwD~R~~~~~-~~~~-------------~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d 317 (422)
T KOG0264|consen 252 LMIWDTRSNTSK-PSHS-------------VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED 317 (422)
T ss_pred EEEEEcCCCCCC-Cccc-------------ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc
Confidence 999999974211 1111 1237889999999995 66788999999999999997 568999999999
Q ss_pred ceeEEEe
Q 023642 271 NIALWIT 277 (279)
Q Consensus 271 ~v~~v~~ 277 (279)
.|.+|-+
T Consensus 318 ev~~V~W 324 (422)
T KOG0264|consen 318 EVFQVEW 324 (422)
T ss_pred ceEEEEe
Confidence 9998865
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-19 Score=139.44 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=127.8
Q ss_pred ccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC
Q 023642 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 180 (279)
++|=+..+|+........ -..|..-|.+++|+.|.++|++|+.+.-+||||+...+...+ ...+|.+.|..+-|.-.
T Consensus 78 aadftakvw~a~tgdelh-sf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~--E~~ghtg~Ir~v~wc~e 154 (334)
T KOG0278|consen 78 AADFTAKVWDAVTGDELH-SFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK--EISGHTGGIRTVLWCHE 154 (334)
T ss_pred cccchhhhhhhhhhhhhh-hhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch--hhcCCCCcceeEEEecc
Confidence 445566677776655433 346888999999999999999999999999999988754333 46799999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC-------------------------------------
Q 023642 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD------------------------------------- 223 (279)
Q Consensus 181 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 223 (279)
.+.|++++.|++||+||.+++..............+.++.+++
T Consensus 155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P 234 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHP 234 (334)
T ss_pred CceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccC
Confidence 9999999999999999999998865555444444443333333
Q ss_pred -----------------------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeE
Q 023642 224 -----------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (279)
Q Consensus 224 -----------------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~ 261 (279)
++|.++|.|+.|+|||...++||+||+|++|....++.
T Consensus 235 ~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 235 KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 67999999999999999999999999999999876553
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-17 Score=137.16 Aligned_cols=159 Identities=21% Similarity=0.248 Sum_probs=134.4
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.++.+.+|++........+..|...+.++.|+|++.++++++.|+.|++||+.+++.... ...|...+.+++|+|
T Consensus 69 ~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~i~~~~~~~ 145 (289)
T cd00200 69 GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT---LRGHTDWVNSVAFSP 145 (289)
T ss_pred EcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEE---eccCCCcEEEEEEcC
Confidence 45588889999877666677889999999999999999999999899999999997766554 347788899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
++.++++++.|+.+++||+++++...... . |...+.++.|+|+++.+++++.++.|++||++++
T Consensus 146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-----------~-----~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 209 (289)
T cd00200 146 DGTFVASSSQDGTIKLWDLRTGKCVATLT-----------G-----HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG 209 (289)
T ss_pred cCCEEEEEcCCCcEEEEEccccccceeEe-----------c-----CccccceEEECCCcCEEEEecCCCcEEEEECCCC
Confidence 99999998889999999998766533221 1 4458999999999999999999999999999999
Q ss_pred eEEEEEeCCCcceeEEEe
Q 023642 260 KLSLRILAHTVNIALWIT 277 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v~~ 277 (279)
+.+..+..|...+.++..
T Consensus 210 ~~~~~~~~~~~~i~~~~~ 227 (289)
T cd00200 210 KCLGTLRGHENGVNSVAF 227 (289)
T ss_pred ceecchhhcCCceEEEEE
Confidence 999999889888887754
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.4e-18 Score=148.70 Aligned_cols=147 Identities=11% Similarity=0.102 Sum_probs=113.0
Q ss_pred eccccceEeeeeecCC--------CCceeeCCCCCeEEEEECCCCCE-EEEEeCCCcEEEEEcCCCeEEeeeeeccCCCc
Q 023642 100 SAADCCHMLSRYLPVN--------GPWPVDQTTSRAYVSQFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRW 170 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~--------~~~~l~~h~~~V~~~~~spd~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 170 (279)
++.|+.+.+|++.... ....+.+|...|.+++|+|++.. |++++.|++|+|||+.+++..... .|..
T Consensus 93 gS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i----~~~~ 168 (568)
T PTZ00420 93 GSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI----NMPK 168 (568)
T ss_pred EeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE----ecCC
Confidence 5678899999986432 12347899999999999998876 578999999999999998655432 2456
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCcccc-----EEEEEEecCCCEEEEe
Q 023642 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG-----IFSLKFSTDGRELVAG 245 (279)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~sp~g~~l~t~ 245 (279)
.|.+++|+|+|.+|++++.|+.|+|||+++++.... +.+ |.+. ++...|++++.+|+++
T Consensus 169 ~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t-----------l~g-----H~g~~~s~~v~~~~fs~d~~~IlTt 232 (568)
T PTZ00420 169 KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS-----------FHI-----HDGGKNTKNIWIDGLGGDDNYILST 232 (568)
T ss_pred cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE-----------Eec-----ccCCceeEEEEeeeEcCCCCEEEEE
Confidence 799999999999999999999999999999876432 112 3223 3334567899999987
Q ss_pred cCCC----eEEEEECCC-CeEEEEEe
Q 023642 246 SSDD----CIYVYDLEA-NKLSLRIL 266 (279)
Q Consensus 246 s~d~----~i~vwd~~~-~~~~~~~~ 266 (279)
+.|+ .|+|||++. ++++..+.
T Consensus 233 G~d~~~~R~VkLWDlr~~~~pl~~~~ 258 (568)
T PTZ00420 233 GFSKNNMREMKLWDLKNTTSALVTMS 258 (568)
T ss_pred EcCCCCccEEEEEECCCCCCceEEEE
Confidence 7664 799999995 66666654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=136.99 Aligned_cols=173 Identities=17% Similarity=0.130 Sum_probs=134.3
Q ss_pred eccccceEeeeeecC--CCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE
Q 023642 100 SAADCCHMLSRYLPV--NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~--~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (279)
++-|+.+++|.+... -.+.....|.++|.+++|+.||..+++|+.|+.+++||+.+++... ...|.++|..+.|
T Consensus 46 ~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~----v~~Hd~pvkt~~w 121 (347)
T KOG0647|consen 46 GSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ----VAAHDAPVKTCHW 121 (347)
T ss_pred cccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeee----eeecccceeEEEE
Confidence 467999999999874 2345578899999999999999999999999999999999995543 4689999999999
Q ss_pred CCCCC--EEEEEeCCCeEEEEECCCCceeeeeccccccc-----------------------------------------
Q 023642 178 SPDQR--HLVYASMSPIVHIVDVGSGTMESLANVTEIHD----------------------------------------- 214 (279)
Q Consensus 178 sp~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~----------------------------------------- 214 (279)
-+... .|++||.|++++.||.+.........+.+..-
T Consensus 122 v~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~ 201 (347)
T KOG0647|consen 122 VPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQT 201 (347)
T ss_pred ecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCccccee
Confidence 88665 79999999999999998765533222111100
Q ss_pred ---------------------------------eeEEeeCCCCC----ccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 215 ---------------------------------GLDFSAADDGG----YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 215 ---------------------------------~~~~~~~~~~~----~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
.+.|..|...+ .-..|++++|+|....|+|++.||++.+||-.
T Consensus 202 R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 202 RCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred eEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence 00111111000 12457889999999999999999999999998
Q ss_pred CCeEEEEEeCCCcceeEEE
Q 023642 258 ANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 258 ~~~~~~~~~~h~~~v~~v~ 276 (279)
....+++.+.|.++|.+..
T Consensus 282 ar~kLk~s~~~~qpItcc~ 300 (347)
T KOG0647|consen 282 ARTKLKTSETHPQPITCCS 300 (347)
T ss_pred hhhhhhccCcCCCccceeE
Confidence 8888999999999988753
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6e-18 Score=158.83 Aligned_cols=158 Identities=16% Similarity=0.222 Sum_probs=127.7
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
.+.|+.+.+|++........+.+|.+.|++++|+| ++.+|++|+.|+.|++||+.++..+... .. ...|.++.|+
T Consensus 551 ~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~---~~-~~~v~~v~~~ 626 (793)
T PLN00181 551 SNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI---KT-KANICCVQFP 626 (793)
T ss_pred EeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE---ec-CCCeEEEEEe
Confidence 45588889998876655566889999999999997 7899999999999999999988766542 22 3468999995
Q ss_pred -CCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 179 -PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 179 -p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
+++.+|++|+.|+.|++||+++...... .+. +|...|.++.|. ++.+|++++.|++|++||++
T Consensus 627 ~~~g~~latgs~dg~I~iwD~~~~~~~~~----------~~~-----~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 627 SESGRSLAFGSADHKVYYYDLRNPKLPLC----------TMI-----GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccce----------Eec-----CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence 5799999999999999999987652110 111 266799999997 78899999999999999997
Q ss_pred C------CeEEEEEeCCCcceeEEEe
Q 023642 258 A------NKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 258 ~------~~~~~~~~~h~~~v~~v~~ 277 (279)
. ..++.++.+|...++++..
T Consensus 691 ~~~~~~~~~~l~~~~gh~~~i~~v~~ 716 (793)
T PLN00181 691 MSISGINETPLHSFMGHTNVKNFVGL 716 (793)
T ss_pred CCccccCCcceEEEcCCCCCeeEEEE
Confidence 4 3678899999988877654
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-20 Score=146.83 Aligned_cols=142 Identities=18% Similarity=0.187 Sum_probs=122.0
Q ss_pred eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeee-----eeccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD-----ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 121 ~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
.+..+.+.|..|||||++|++|+.||-|.+|+..+|+..... -.+.-+..+|.++.|+.|...+|+|+.||.|++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 456788999999999999999999999999999988432221 123356778999999999999999999999999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
|.+++|.+.. ++.. .|+..|+++.||.|+..+++++.|.++++.-+++|++++.++||...|+.+
T Consensus 290 Wri~tG~ClR--rFdr-------------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a 354 (508)
T KOG0275|consen 290 WRIETGQCLR--RFDR-------------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEA 354 (508)
T ss_pred EEEecchHHH--Hhhh-------------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccce
Confidence 9999999843 2221 277799999999999999999999999999999999999999999999877
Q ss_pred Ee
Q 023642 276 IT 277 (279)
Q Consensus 276 ~~ 277 (279)
..
T Consensus 355 ~f 356 (508)
T KOG0275|consen 355 TF 356 (508)
T ss_pred EE
Confidence 54
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=156.59 Aligned_cols=166 Identities=18% Similarity=0.203 Sum_probs=130.5
Q ss_pred ccCCCCee---eccccceEeeeeecCC-------CCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEe
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVN-------GPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQ 160 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~-------~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~ 160 (279)
.|++++.+ ++.|+.+.+|+..... .+.....+...|.+++|+| ++.+|++++.|++|++||+.+++.+.
T Consensus 490 ~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~ 569 (793)
T PLN00181 490 GFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVT 569 (793)
T ss_pred EECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 45666664 4678899999864311 1112233457899999997 57899999999999999999886655
Q ss_pred eeeeccCCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEe-cC
Q 023642 161 KDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS-TD 238 (279)
Q Consensus 161 ~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~ 238 (279)
. +.+|...|++++|+| ++.+|++++.|++|++||++++....... +...+.++.|+ ++
T Consensus 570 ~---~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-----------------~~~~v~~v~~~~~~ 629 (793)
T PLN00181 570 E---MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-----------------TKANICCVQFPSES 629 (793)
T ss_pred E---ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-----------------cCCCeEEEEEeCCC
Confidence 4 468999999999997 78999999999999999999876543221 11368899995 56
Q ss_pred CCEEEEecCCCeEEEEECCCCe-EEEEEeCCCcceeEEEe
Q 023642 239 GRELVAGSSDDCIYVYDLEANK-LSLRILAHTVNIALWIT 277 (279)
Q Consensus 239 g~~l~t~s~d~~i~vwd~~~~~-~~~~~~~h~~~v~~v~~ 277 (279)
|.+|++|+.|+.|++||+++++ ++..+.+|...|.++..
T Consensus 630 g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f 669 (793)
T PLN00181 630 GRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF 669 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEE
Confidence 9999999999999999998765 67888999999988754
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=149.02 Aligned_cols=157 Identities=14% Similarity=0.125 Sum_probs=123.3
Q ss_pred eccccceEeeeeecCCCCc-eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 100 SAADCCHMLSRYLPVNGPW-PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~-~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
++.++.+..+++...+... ++.+|...|..+.|++|+.+||+|+.|+.+.|||.....++.. +.+|...|.+++|+
T Consensus 276 Gsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~---~~~H~aAVKA~awc 352 (484)
T KOG0305|consen 276 GSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT---FTEHTAAVKALAWC 352 (484)
T ss_pred ecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE---EeccceeeeEeeeC
Confidence 3455566666655443322 4889999999999999999999999999999999966555443 56999999999999
Q ss_pred C-CCCEEEEEe--CCCeEEEEECCCCceeeeeccccccceeEEeeCCC---------------------------CCccc
Q 023642 179 P-DQRHLVYAS--MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD---------------------------GGYSF 228 (279)
Q Consensus 179 p-~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~ 228 (279)
| ....||+|+ .|+.|++||+.++..............+.+..+.. .+|..
T Consensus 353 P~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~ 432 (484)
T KOG0305|consen 353 PWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS 432 (484)
T ss_pred CCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc
Confidence 9 456788765 68999999999888755444433334444443332 67999
Q ss_pred cEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 229 ~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
.|..++++|||..+++|+.|.++++|++-..
T Consensus 433 RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 433 RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999999999999999999999998653
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=131.81 Aligned_cols=144 Identities=15% Similarity=0.202 Sum_probs=126.0
Q ss_pred CCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeE
Q 023642 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (279)
Q Consensus 114 ~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i 193 (279)
+....++..+.++|.++.|+-||++.++++.|.+|++|+...|.+++. ..+|...|.+++.+.|...+++|+.|+.+
T Consensus 7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~likt---YsghG~EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT---YSGHGHEVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeee---ecCCCceeeeccccccccccccCCCCceE
Confidence 334456889999999999999999999999999999999999988776 46888899999999999999999999999
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC--CeEEEEEeCCCcc
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA--NKLSLRILAHTVN 271 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~--~~~~~~~~~h~~~ 271 (279)
.+||+.+|+..... . +|.+.|+.+.|+.+...+++|+-|.++++||-++ -++++.+..-.+.
T Consensus 84 ~vwDV~TGkv~Rr~-----------r-----gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~ 147 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRF-----------R-----GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG 147 (307)
T ss_pred EEEEcccCeeeeec-----------c-----cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc
Confidence 99999999975432 2 3777999999999999999999999999999876 4688988877777
Q ss_pred eeEEE
Q 023642 272 IALWI 276 (279)
Q Consensus 272 v~~v~ 276 (279)
|.++.
T Consensus 148 V~Si~ 152 (307)
T KOG0316|consen 148 VSSID 152 (307)
T ss_pred eeEEE
Confidence 77764
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.6e-19 Score=154.96 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=122.8
Q ss_pred ccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC
Q 023642 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 182 (279)
.+.+.+|++........+..|.++|..++|+|++.+|++|+.|-+|++|+..+.+|+.. +.+|-..|+.+.|++.-.
T Consensus 30 sG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft---L~GHlDYVRt~~FHheyP 106 (1202)
T KOG0292|consen 30 SGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT---LLGHLDYVRTVFFHHEYP 106 (1202)
T ss_pred CceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh---hccccceeEEeeccCCCc
Confidence 45567888877777777999999999999999999999999999999999999887665 679999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 183 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
+|+++|.|-+|+||+-.+.+++.... ||+..|.|..|+|....++++|-|.+|+|||+.
T Consensus 107 WIlSASDDQTIrIWNwqsr~~iavlt----------------GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDis 165 (1202)
T KOG0292|consen 107 WILSASDDQTIRIWNWQSRKCIAVLT----------------GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDIS 165 (1202)
T ss_pred eEEEccCCCeEEEEeccCCceEEEEe----------------cCceEEEeeccCCccceEEEecccceEEEEeec
Confidence 99999999999999999999876543 377799999999999999999999999999984
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-19 Score=136.41 Aligned_cols=158 Identities=19% Similarity=0.167 Sum_probs=127.6
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
++-|+++.+|.....+...++.+|...|+..+|+| .+++|++++.|+.+++||++..-+. .....|...|.++.|+
T Consensus 123 sSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~---~~i~ah~~Eil~cdw~ 199 (311)
T KOG0277|consen 123 SSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF---MSIEAHNSEILCCDWS 199 (311)
T ss_pred eccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce---eEEEeccceeEeeccc
Confidence 56799999999988888889999999999999999 7889999999999999999764221 1245777789999999
Q ss_pred C-CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEecCCCeEEEEEC
Q 023642 179 P-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 179 p-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s~d~~i~vwd~ 256 (279)
. +.+.+++++.|+.|+.||+++-+.. +.. +. +|...|..++|||. ...|++++.|-+++|||.
T Consensus 200 ky~~~vl~Tg~vd~~vr~wDir~~r~p-l~e---------L~-----gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~ 264 (311)
T KOG0277|consen 200 KYNHNVLATGGVDNLVRGWDIRNLRTP-LFE---------LN-----GHGLAVRKVKFSPHHASLLASASYDMTVRIWDP 264 (311)
T ss_pred ccCCcEEEecCCCceEEEEehhhcccc-cee---------ec-----CCceEEEEEecCcchhhHhhhccccceEEeccc
Confidence 8 5567899999999999999986632 111 11 36679999999997 557899999999999998
Q ss_pred CCC-eEEEEEeCCCcceeEE
Q 023642 257 EAN-KLSLRILAHTVNIALW 275 (279)
Q Consensus 257 ~~~-~~~~~~~~h~~~v~~v 275 (279)
..+ .++.+...|+..|-.+
T Consensus 265 ~~~ds~~e~~~~HtEFv~g~ 284 (311)
T KOG0277|consen 265 ERQDSAIETVDHHTEFVCGL 284 (311)
T ss_pred ccchhhhhhhhccceEEecc
Confidence 743 4566667777665443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=140.88 Aligned_cols=147 Identities=22% Similarity=0.289 Sum_probs=110.1
Q ss_pred CeeeccccceEeeeeecCCCCc-----eeeCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCc
Q 023642 97 GRFSAADCCHMLSRYLPVNGPW-----PVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW 170 (279)
Q Consensus 97 ~~~~~~d~~~~~~~~~~~~~~~-----~l~~h~~~V~~~~~spd-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 170 (279)
|++.+.|+...+....+..+.| .+.+|+..|-.++|||. ...|++++-|+.|+|||++.+....... ...|.+
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~s 303 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNS 303 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCC
Confidence 4445555543333222333433 36789999999999994 5678999999999999999884433322 378999
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEecCCC
Q 023642 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDD 249 (279)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s~d~ 249 (279)
.|..+.|+.+-.+||+|+.||+++|||++..+..... ..|.- |..+|+++.|+|. ...|++++.|.
T Consensus 304 DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pV--------A~fk~-----Hk~pItsieW~p~e~s~iaasg~D~ 370 (440)
T KOG0302|consen 304 DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPV--------ATFKY-----HKAPITSIEWHPHEDSVIAASGEDN 370 (440)
T ss_pred ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcc--------eeEEe-----ccCCeeEEEeccccCceEEeccCCC
Confidence 9999999998889999999999999999975542110 12222 7779999999995 56778888999
Q ss_pred eEEEEECC
Q 023642 250 CIYVYDLE 257 (279)
Q Consensus 250 ~i~vwd~~ 257 (279)
.|.+||+.
T Consensus 371 QitiWDls 378 (440)
T KOG0302|consen 371 QITIWDLS 378 (440)
T ss_pred cEEEEEee
Confidence 99999985
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-19 Score=156.85 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=129.9
Q ss_pred ccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC
Q 023642 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 182 (279)
+..+-+|..-......-+.+|..+|.++.|+++..+|++|+.+|+|++||+..++.++. +.+|...+..+.|+|-+.
T Consensus 49 ~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrt---Ltgh~~~~~sv~f~P~~~ 125 (825)
T KOG0267|consen 49 DEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT---LTGHLLNITSVDFHPYGE 125 (825)
T ss_pred ceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhh---hhccccCcceeeeccceE
Confidence 33444554433333334789999999999999999999999999999999998876664 678999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEE
Q 023642 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (279)
Q Consensus 183 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~ 262 (279)
+.+.++.|+.+++||.+...+..... +|...+..+.|+|+|++++.++.|.+++|||+..|+.+
T Consensus 126 ~~a~gStdtd~~iwD~Rk~Gc~~~~~----------------s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~ 189 (825)
T KOG0267|consen 126 FFASGSTDTDLKIWDIRKKGCSHTYK----------------SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS 189 (825)
T ss_pred EeccccccccceehhhhccCceeeec----------------CCcceeEEEeecCCCceeeccCCcceeeeecccccccc
Confidence 99999999999999999665543221 26668999999999999999999999999999999999
Q ss_pred EEEeCCCcceeEE
Q 023642 263 LRILAHTVNIALW 275 (279)
Q Consensus 263 ~~~~~h~~~v~~v 275 (279)
..|.+|...|.++
T Consensus 190 ~ef~~~e~~v~sl 202 (825)
T KOG0267|consen 190 KEFKSHEGKVQSL 202 (825)
T ss_pred ccccccccccccc
Confidence 9999999888765
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=140.08 Aligned_cols=164 Identities=13% Similarity=0.140 Sum_probs=129.9
Q ss_pred eccccceEeeeeecC----------------CCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeee
Q 023642 100 SAADCCHMLSRYLPV----------------NGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKD 162 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~----------------~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~ 162 (279)
.+..+.+.+|++-+. ....++.+|...=++++||| .-..|++|.--+.|++|...+|......
T Consensus 171 wse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~ 250 (440)
T KOG0302|consen 171 WSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQ 250 (440)
T ss_pred ecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecC
Confidence 345566677765431 22345789999999999999 2334778887889999999887554444
Q ss_pred eeccCCCcceEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCE
Q 023642 163 ILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241 (279)
Q Consensus 163 ~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 241 (279)
..+.+|+..|.+++|||.. ..|++|+.|++|+|||++.+........ +.|.+.|+.+.|+..-.+
T Consensus 251 ~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~--------------kAh~sDVNVISWnr~~~l 316 (440)
T KOG0302|consen 251 RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST--------------KAHNSDVNVISWNRREPL 316 (440)
T ss_pred ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe--------------eccCCceeeEEccCCcce
Confidence 5567899999999999965 5789999999999999999854322211 126679999999998889
Q ss_pred EEEecCCCeEEEEECCC---CeEEEEEeCCCcceeEEEe
Q 023642 242 LVAGSSDDCIYVYDLEA---NKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 242 l~t~s~d~~i~vwd~~~---~~~~~~~~~h~~~v~~v~~ 277 (279)
|++|+.||+++|||++. ++++.+|+.|..+|+++-+
T Consensus 317 LasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW 355 (440)
T KOG0302|consen 317 LASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEW 355 (440)
T ss_pred eeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEe
Confidence 99999999999999985 7799999999999999865
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=142.61 Aligned_cols=167 Identities=19% Similarity=0.232 Sum_probs=128.1
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeee--------------c
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL--------------A 165 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------------~ 165 (279)
.+.|+...+|++...+...+|.+|++.|+++.|......+++|+.|.+|++||+....|...... .
T Consensus 237 as~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~ 316 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVI 316 (459)
T ss_pred ecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeee
Confidence 46788899999999999999999999999999988777788888888777777765543332111 0
Q ss_pred c---------------------CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCC
Q 023642 166 K---------------------SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224 (279)
Q Consensus 166 ~---------------------~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (279)
. ...+.|+++..++++..|.+++.|.++.+.|+++.+...........
T Consensus 317 SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k----------- 385 (459)
T KOG0288|consen 317 SGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK----------- 385 (459)
T ss_pred ecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc-----------
Confidence 1 12336888888888888888888888888888887765433222111
Q ss_pred CccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcc--eeEEEee
Q 023642 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVN--IALWITC 278 (279)
Q Consensus 225 ~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~--v~~v~~~ 278 (279)
-...++.+.|||++.|+++||.||.|+||++.++++...+...... |+++.++
T Consensus 386 -~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~ 440 (459)
T KOG0288|consen 386 -CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN 440 (459)
T ss_pred -cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc
Confidence 1125789999999999999999999999999999999999865544 8888764
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.3e-19 Score=139.29 Aligned_cols=166 Identities=17% Similarity=0.218 Sum_probs=130.5
Q ss_pred CccCCCCee---eccccceEeeeeec------------CC---C-C--ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 023642 91 GNYSGRGRF---SAADCCHMLSRYLP------------VN---G-P--WPVDQTTSRAYVSQFSADGSLFVAGFQASQIR 149 (279)
Q Consensus 91 ~~~~~~~~~---~~~d~~~~~~~~~~------------~~---~-~--~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~ 149 (279)
..|+++|.+ ++.|..+.+-+... .. . + .++..|.+.|+++.|+|....|++|+.|++|+
T Consensus 118 aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvK 197 (430)
T KOG0640|consen 118 AAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVK 197 (430)
T ss_pred eeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEE
Confidence 468899988 46677777665431 11 1 1 34678999999999999999999999999999
Q ss_pred EEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCcccc
Q 023642 150 IYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG 229 (279)
Q Consensus 150 iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (279)
+||+......+....+ ....+|.++.|+|.|.+|+.|..-.++++||+.+-++-.. ...+..|++.
T Consensus 198 lFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs-------------anPd~qht~a 263 (430)
T KOG0640|consen 198 LFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS-------------ANPDDQHTGA 263 (430)
T ss_pred EEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee-------------cCcccccccc
Confidence 9999865332222222 2234799999999999999999999999999999876321 1122348889
Q ss_pred EEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe-CCCc
Q 023642 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTV 270 (279)
Q Consensus 230 v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~-~h~~ 270 (279)
|+++.+++.|++.+|++.||.|++||--+++|+.++. +|.+
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g 305 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG 305 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999998886 4544
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.6e-18 Score=140.21 Aligned_cols=153 Identities=11% Similarity=0.120 Sum_probs=122.2
Q ss_pred eccccceEeeeee--cCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEE
Q 023642 100 SAADCCHMLSRYL--PVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176 (279)
Q Consensus 100 ~~~d~~~~~~~~~--~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 176 (279)
.+.|+.+.+|+.. +........+|++.|+|++|+| ++..||+|+.|++|.+||++.-.. ....+.+|...|..+.
T Consensus 246 v~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~ 323 (422)
T KOG0264|consen 246 VGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVE 323 (422)
T ss_pred ecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEE
Confidence 5678899999998 4555667899999999999999 667789999999999999987543 3345789999999999
Q ss_pred ECCCC-CEEEEEeCCCeEEEEECCCCce-eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCE-EEEecCCCeEEE
Q 023642 177 LSPDQ-RHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYV 253 (279)
Q Consensus 177 ~sp~~-~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~t~s~d~~i~v 253 (279)
|+|+. ..||+++.|+.+.+||+..-.. .........+..+.|... ||...|..+.|+|+..+ +++.+.|+.+.|
T Consensus 324 WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~Hg---GH~~kV~DfsWnp~ePW~I~SvaeDN~LqI 400 (422)
T KOG0264|consen 324 WSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHG---GHTAKVSDFSWNPNEPWTIASVAEDNILQI 400 (422)
T ss_pred eCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEec---CcccccccccCCCCCCeEEEEecCCceEEE
Confidence 99965 5688999999999999976333 222334444445455543 49999999999999876 557889999999
Q ss_pred EECC
Q 023642 254 YDLE 257 (279)
Q Consensus 254 wd~~ 257 (279)
|+..
T Consensus 401 W~~s 404 (422)
T KOG0264|consen 401 WQMA 404 (422)
T ss_pred eecc
Confidence 9975
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-18 Score=141.95 Aligned_cols=165 Identities=16% Similarity=0.220 Sum_probs=123.9
Q ss_pred ccCCCCeeeccccceEeeeeecCCC---CceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC
Q 023642 92 NYSGRGRFSAADCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKS 167 (279)
Q Consensus 92 ~~~~~~~~~~~d~~~~~~~~~~~~~---~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 167 (279)
.|..+|++.+..+......++.... ...+.+|+.+|..+.|+| ++..|++|+.|+.+++||+.+... ...+.+
T Consensus 75 ~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v---~~~l~~ 151 (487)
T KOG0310|consen 75 DFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV---QAELSG 151 (487)
T ss_pred EeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE---EEEecC
Confidence 4566777754433333333333222 234789999999999999 556678899999999999998863 234689
Q ss_pred CCcceEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 168 LRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 168 ~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
|+++|++.+|+|-. ..+++|+.||.|++||++..... .... .|..+|.++.|-|.|..+++++
T Consensus 152 htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~-v~el---------------nhg~pVe~vl~lpsgs~iasAg 215 (487)
T KOG0310|consen 152 HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR-VVEL---------------NHGCPVESVLALPSGSLIASAG 215 (487)
T ss_pred CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce-eEEe---------------cCCCceeeEEEcCCCCEEEEcC
Confidence 99999999999954 57899999999999999986421 1111 1555999999999999999987
Q ss_pred CCCeEEEEECCCC-eEEEEEeCCCcceeEEE
Q 023642 247 SDDCIYVYDLEAN-KLSLRILAHTVNIALWI 276 (279)
Q Consensus 247 ~d~~i~vwd~~~~-~~~~~~~~h~~~v~~v~ 276 (279)
. ..|+|||+.+| +.+..+..|...|+|+.
T Consensus 216 G-n~vkVWDl~~G~qll~~~~~H~KtVTcL~ 245 (487)
T KOG0310|consen 216 G-NSVKVWDLTTGGQLLTSMFNHNKTVTCLR 245 (487)
T ss_pred C-CeEEEEEecCCceehhhhhcccceEEEEE
Confidence 4 56999999855 55555556999999875
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.8e-18 Score=139.05 Aligned_cols=161 Identities=18% Similarity=0.160 Sum_probs=137.8
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
++.|...++.+.-..+...+++||...|+.+.++|+...+++++.|..|+||......+.. ....|..+|+.+..+|
T Consensus 237 GG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~ 313 (506)
T KOG0289|consen 237 GGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHP 313 (506)
T ss_pred cCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc---ccccccccceeeeecc
Confidence 4566677777776666677899999999999999999999999999999999987654332 3578999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
.|.||++++.|++..+.|++++.......... ..-.+++.+|+|||..|.+|..|+.|+|||++++
T Consensus 314 tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~--------------s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 314 TGEYLLSASNDGTWAFSDISSGSQLTVVSDET--------------SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred CCcEEEEecCCceEEEEEccCCcEEEEEeecc--------------ccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 99999999999999999999998754332210 1115899999999999999999999999999999
Q ss_pred eEEEEEeCCCcceeEEEe
Q 023642 260 KLSLRILAHTVNIALWIT 277 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v~~ 277 (279)
..+..|++|.++|.++..
T Consensus 380 ~~~a~Fpght~~vk~i~F 397 (506)
T KOG0289|consen 380 TNVAKFPGHTGPVKAISF 397 (506)
T ss_pred cccccCCCCCCceeEEEe
Confidence 999999999999998864
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.6e-18 Score=147.67 Aligned_cols=178 Identities=17% Similarity=0.176 Sum_probs=134.1
Q ss_pred chhhhhccccCcc-----CCCCee--eccccceEeeeeecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEE
Q 023642 81 STVKMLAGREGNY-----SGRGRF--SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYD 152 (279)
Q Consensus 81 ~~~~~~~~~~~~~-----~~~~~~--~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd 152 (279)
.+...+.||...+ +.++-+ ++.|+++.+|++-. ..-.....|.+-|+|++|+| |.++|++|+-|++||||+
T Consensus 360 kP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~-~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWs 438 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGR-KECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWS 438 (712)
T ss_pred cchhhhhccchhheecccccCCeeEeccccccEEeecCCC-cceeeEEecCCeeEEEEecccCCCcEeecccccceEEee
Confidence 3556778887654 333333 67899999999763 33345678999999999999 899999999999999999
Q ss_pred cCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEE
Q 023642 153 VERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS 232 (279)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 232 (279)
+...+.+. -.....-|++++|.|||++.+.|+.+|.+++|++...+......+ .........|. .|+.
T Consensus 439 I~d~~Vv~----W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I-------~~~~~Kk~~~~-rITG 506 (712)
T KOG0283|consen 439 ISDKKVVD----WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI-------RLHNKKKKQGK-RITG 506 (712)
T ss_pred cCcCeeEe----ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE-------eeccCccccCc-eeee
Confidence 98874432 234456799999999999999999999999999998776432221 11111112233 8999
Q ss_pred EEEecCCC-EEEEecCCCeEEEEECCCCeEEEEEeCCCcc
Q 023642 233 LKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTVN 271 (279)
Q Consensus 233 ~~~sp~g~-~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~ 271 (279)
+.|.|... .+++.+.|..|+|+|.++..++.+|+|+...
T Consensus 507 ~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~ 546 (712)
T KOG0283|consen 507 LQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT 546 (712)
T ss_pred eEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC
Confidence 99997543 4556688999999999888888888876543
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-18 Score=134.15 Aligned_cols=127 Identities=20% Similarity=0.243 Sum_probs=108.5
Q ss_pred CCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCC-CeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 023642 122 QTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 122 ~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~ 199 (279)
...+.|.+++||| ...++++|+.|++||+|++.. |....+ ....|.++|.+++|+.||..+++++.|+.+++||+.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k--a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK--AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccch--hhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence 4578899999999 666777999999999999976 444443 346899999999999999999999999999999999
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC--EEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
+++...+.. |..+|..+.|-+... .|+|||.|.+|+.||.+...++.++.-
T Consensus 103 S~Q~~~v~~-----------------Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L 155 (347)
T KOG0647|consen 103 SGQVSQVAA-----------------HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL 155 (347)
T ss_pred CCCeeeeee-----------------cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec
Confidence 998754432 677999999987655 789999999999999999998888763
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=141.47 Aligned_cols=139 Identities=22% Similarity=0.304 Sum_probs=115.9
Q ss_pred cCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCe
Q 023642 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (279)
Q Consensus 113 ~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 192 (279)
|.+..+++..|++.|.-+.||++|++||+++.|.+..+|++..-..+.....+.+|..+|..+.||||.++|++|+.|..
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~ 292 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV 292 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence 55666779999999999999999999999999999999998655444444557799999999999999999999999999
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
+++||+.+|........ ++...+.+++|.|||..+++|+.|+++..||+. |..+..+++
T Consensus 293 ~~lwDv~tgd~~~~y~~---------------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~g 351 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPS---------------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEG 351 (519)
T ss_pred eeeccCCcchhhhhccc---------------CcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccc
Confidence 99999999987443221 133478999999999999999999999999986 444444444
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-18 Score=148.30 Aligned_cols=143 Identities=11% Similarity=0.168 Sum_probs=116.0
Q ss_pred eccccceEeeeeecC-CCC--ceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEE
Q 023642 100 SAADCCHMLSRYLPV-NGP--WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT 175 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~-~~~--~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 175 (279)
.+..+.+.+|++-.. ..+ ..+..|.-.|.++.|++ ...+|++|++||.|++||++....... +.+....|+++
T Consensus 106 ~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t---~~~nSESiRDV 182 (839)
T KOG0269|consen 106 CSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST---FRSNSESIRDV 182 (839)
T ss_pred ecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc---ccccchhhhce
Confidence 456778889998762 223 35889999999999999 556889999999999999997755443 34566689999
Q ss_pred EECC-CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEE
Q 023642 176 SLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (279)
Q Consensus 176 ~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vw 254 (279)
+|+| .+..++++...|.+.+||++........ . ..|.++|.|+.|+|++.+||||++|+.|+||
T Consensus 183 ~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k-~--------------~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 183 KFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK-L--------------TAHNGPVLCLNWHPNREWLATGGRDKMVKIW 247 (839)
T ss_pred eeccCCCceEEEecCCceEEEeeccCchhHHHH-h--------------hcccCceEEEeecCCCceeeecCCCccEEEE
Confidence 9999 5778999999999999999976542111 1 1288899999999999999999999999999
Q ss_pred ECCCCe
Q 023642 255 DLEANK 260 (279)
Q Consensus 255 d~~~~~ 260 (279)
|+.+++
T Consensus 248 d~t~~~ 253 (839)
T KOG0269|consen 248 DMTDSR 253 (839)
T ss_pred eccCCC
Confidence 998654
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.8e-18 Score=148.03 Aligned_cols=153 Identities=15% Similarity=0.143 Sum_probs=130.2
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
++.|..+.+|++.......++.+|.++|.++..+ +.++++|+.|++|++||+.+++++.. +.+|...|.++.+.+
T Consensus 307 gs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s---l~gH~~~V~sl~~~~ 381 (537)
T KOG0274|consen 307 GSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS---LSGHTGRVYSLIVDS 381 (537)
T ss_pred ccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeee---ecCCcceEEEEEecC
Confidence 3589999999998777777888899999999998 89999999999999999999988876 578999999998866
Q ss_pred CCCEEEEEeCCCeEEEEECCCC-ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
. ..+++|+.|++|++||+++. ++..... +|..-+..+.+ .+++|++++.|++|++||..+
T Consensus 382 ~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~----------------~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 382 E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ----------------GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred c-ceEEeeeeccceEeecCCchhhhhhhhc----------------CCccccccccc--ccceeEeccccccEEEeeccc
Confidence 5 89999999999999999998 5432221 25556655554 588999999999999999999
Q ss_pred CeEEEEEeC-CCcceeEEE
Q 023642 259 NKLSLRILA-HTVNIALWI 276 (279)
Q Consensus 259 ~~~~~~~~~-h~~~v~~v~ 276 (279)
++++.++.+ |...|.++.
T Consensus 443 ~~~~~~~~~~~~~~v~~l~ 461 (537)
T KOG0274|consen 443 GECLRTLEGRHVGGVSALA 461 (537)
T ss_pred CceeeeeccCCcccEEEee
Confidence 999999999 677777664
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-17 Score=125.06 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=126.3
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEe-------------------
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ------------------- 160 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~------------------- 160 (279)
.+.|+.+++|+.........+..-.+.+ -+.|+|+|.+++.++.|..|...|.++.+...
T Consensus 83 as~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~ 161 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDL 161 (313)
T ss_pred ecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCE
Confidence 6789999999998877665555554544 47899999999999999998888876532211
Q ss_pred -------------------eeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeC
Q 023642 161 -------------------KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (279)
Q Consensus 161 -------------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 221 (279)
.......|.....++.|+|+|+++|+|+.|-.+.+||+..--+......
T Consensus 162 Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR------------ 229 (313)
T KOG1407|consen 162 FFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR------------ 229 (313)
T ss_pred EEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc------------
Confidence 1112347777888999999999999999999999999987665433221
Q ss_pred CCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 222 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 222 ~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+..+|..++||.||++||++|+|..|-|=++++|..+..++ +.++.++|.+
T Consensus 230 ----ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAW 280 (313)
T KOG1407|consen 230 ----LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAW 280 (313)
T ss_pred ----ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEe
Confidence 34489999999999999999999999999999999998887 5666666653
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=131.72 Aligned_cols=155 Identities=15% Similarity=0.197 Sum_probs=130.1
Q ss_pred eccccceEeeeeecCCCCce--eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE
Q 023642 100 SAADCCHMLSRYLPVNGPWP--VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~--l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (279)
++.|.++.+.++-....... ...-..+|.++.|+|.|.+|+.|..-..+++||+.+.+|........+|.+.|+++.+
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY 269 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEe
Confidence 46788888887765543332 3455789999999999999999999999999999999887665566789999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 178 sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
++.+++.++++.||.|+|||--.+++... +...+. ...|.+..|+.+|+++++.+.|..+++|.+.
T Consensus 270 s~t~~lYvTaSkDG~IklwDGVS~rCv~t--~~~AH~------------gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 270 SSTGSLYVTASKDGAIKLWDGVSNRCVRT--IGNAHG------------GSEVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred cCCccEEEEeccCCcEEeeccccHHHHHH--HHhhcC------------CceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 99999999999999999999888877432 222222 2378999999999999999999999999999
Q ss_pred CCeEEEEEeCC
Q 023642 258 ANKLSLRILAH 268 (279)
Q Consensus 258 ~~~~~~~~~~h 268 (279)
++++++.+.|-
T Consensus 336 t~R~l~~YtGA 346 (430)
T KOG0640|consen 336 TGRMLKEYTGA 346 (430)
T ss_pred CCceEEEEecC
Confidence 99999999864
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-18 Score=144.22 Aligned_cols=135 Identities=23% Similarity=0.249 Sum_probs=105.3
Q ss_pred eeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEeeeee---ccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 120 VDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
.+||...++|.+|+|+. ..|++++.|+++||||+...+....++. ..+.+-+++.++|+|||+.||+|..||.|.+
T Consensus 264 TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~ 343 (641)
T KOG0772|consen 264 TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQI 343 (641)
T ss_pred cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceee
Confidence 47999999999999955 5789999999999999987643333222 2344557999999999999999999999999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccc--cEEEEEEecCCCEEEEecCCCeEEEEECCC-CeEEEEEeC
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSF--GIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRILA 267 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~-~~~~~~~~~ 267 (279)
|+..+............ |.. .|+|++||+||++|++-+.|+++++||++. .+++....+
T Consensus 344 W~~~~~~v~p~~~vk~A-------------H~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg 405 (641)
T KOG0772|consen 344 WDKGSRTVRPVMKVKDA-------------HLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG 405 (641)
T ss_pred eecCCcccccceEeeec-------------cCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcC
Confidence 99866544332222221 443 899999999999999999999999999986 345554443
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-17 Score=135.64 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=119.7
Q ss_pred ccccceEeeeeecCCCCceeeCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCe-EEeeeeeccCCCcceEEEEEC
Q 023642 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd-~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~s 178 (279)
+.|+...+|++........+.+|++.|.|.+|+|- +..+++|+.||+|++||++... .+. .-+|..+|..+.+-
T Consensus 130 sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~----elnhg~pVe~vl~l 205 (487)
T KOG0310|consen 130 SDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV----ELNHGCPVESVLAL 205 (487)
T ss_pred CCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE----EecCCCceeeEEEc
Confidence 34444555555554443358999999999999995 5588999999999999998763 222 24788899999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 179 p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
|.|..|++++.. .+++||+.+|........ .|...|+|+.+..+++.|++++-|+.|++||+.+
T Consensus 206 psgs~iasAgGn-~vkVWDl~~G~qll~~~~---------------~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 206 PSGSLIASAGGN-SVKVWDLTTGGQLLTSMF---------------NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred CCCCEEEEcCCC-eEEEEEecCCceehhhhh---------------cccceEEEEEeecCCceEeecccccceEEEEccc
Confidence 999999998875 799999996665322111 1666999999999999999999999999999888
Q ss_pred CeEEEEEeCCCcceeEE
Q 023642 259 NKLSLRILAHTVNIALW 275 (279)
Q Consensus 259 ~~~~~~~~~h~~~v~~v 275 (279)
-+.+..+. ..++|-++
T Consensus 270 ~Kvv~s~~-~~~pvLsi 285 (487)
T KOG0310|consen 270 YKVVHSWK-YPGPVLSI 285 (487)
T ss_pred eEEEEeee-cccceeeE
Confidence 88888776 34555544
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-17 Score=140.90 Aligned_cols=177 Identities=16% Similarity=0.164 Sum_probs=144.9
Q ss_pred hhhhhccccCc-----cCCCCee---eccccceEeeeeecC-----CCCc-------eeeCCCCCeEEEEECCCCCEEEE
Q 023642 82 TVKMLAGREGN-----YSGRGRF---SAADCCHMLSRYLPV-----NGPW-------PVDQTTSRAYVSQFSADGSLFVA 141 (279)
Q Consensus 82 ~~~~~~~~~~~-----~~~~~~~---~~~d~~~~~~~~~~~-----~~~~-------~l~~h~~~V~~~~~spd~~~l~s 141 (279)
....+.+|+.. .+|++.. +++|.++..|++.-. .... .....++.|.|+.+||||++|+.
T Consensus 446 l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV 525 (888)
T KOG0306|consen 446 LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV 525 (888)
T ss_pred hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE
Confidence 44556667664 3444442 788999999987532 2222 12345789999999999999999
Q ss_pred EeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeC
Q 023642 142 GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (279)
Q Consensus 142 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 221 (279)
+--|++|+||-+++-+.. ..+.+|.-||.++..+||++.+++||.|+.|+||-+.=|.+... |-+
T Consensus 526 sLLdnTVkVyflDtlKFf---lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS-----------~fA- 590 (888)
T KOG0306|consen 526 SLLDNTVKVYFLDTLKFF---LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS-----------FFA- 590 (888)
T ss_pred EeccCeEEEEEecceeee---eeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh-----------hhc-
Confidence 999999999999986543 34679999999999999999999999999999999988887432 222
Q ss_pred CCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 222 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 222 ~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
|...|.++.|-|....+.+++.|+.|+-||-..-++++++++|...|+|+..
T Consensus 591 ----HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav 642 (888)
T KOG0306|consen 591 ----HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAV 642 (888)
T ss_pred ----ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEE
Confidence 4458999999999999999999999999999999999999999999999864
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-18 Score=148.03 Aligned_cols=158 Identities=20% Similarity=0.193 Sum_probs=138.0
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
++.++.+.+|++.......+|.+|...+..++|+|-+.++++|+.|..+++||.+..-|... ..+|.+.|..+.|+|
T Consensus 88 gsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~---~~s~~~vv~~l~lsP 164 (825)
T KOG0267|consen 88 GSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT---YKSHTRVVDVLRLSP 164 (825)
T ss_pred cccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee---ecCCcceeEEEeecC
Confidence 56788999999998888889999999999999999999999999999999999985546554 457888999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
+|++++.++.|.+++|||...|+...- |. +|.+.+.++.|+|..-.+++|+.|++|++||+++-
T Consensus 165 ~Gr~v~~g~ed~tvki~d~~agk~~~e-----------f~-----~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 165 DGRWVASGGEDNTVKIWDLTAGKLSKE-----------FK-----SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred CCceeeccCCcceeeeecccccccccc-----------cc-----cccccccccccCchhhhhccCCCCceeeeecccee
Confidence 999999999999999999998886432 22 25568999999999989999999999999999998
Q ss_pred eEEEEEeCCCcceeEEE
Q 023642 260 KLSLRILAHTVNIALWI 276 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v~ 276 (279)
+.+........+|.++.
T Consensus 229 e~I~s~~~~~~~v~~~~ 245 (825)
T KOG0267|consen 229 EVISSGKPETDGVRSLA 245 (825)
T ss_pred EEeeccCCccCCceeee
Confidence 88888887777777664
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.9e-17 Score=121.84 Aligned_cols=148 Identities=17% Similarity=0.248 Sum_probs=108.5
Q ss_pred eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC--eEEeeeeeccCCCcceEEEEECCC------------------
Q 023642 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPD------------------ 180 (279)
Q Consensus 121 ~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~sp~------------------ 180 (279)
+.|.+.|+|.+|||+|.++++|++|++|++.-+... ........+.-|.+.|++++|-.+
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 568999999999999999999999999998765432 211122233455555666665432
Q ss_pred ----------------------------CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEE
Q 023642 181 ----------------------------QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS 232 (279)
Q Consensus 181 ----------------------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 232 (279)
+-++++|+.|.+|++||++-..+...... +|...+ -.++.|.+
T Consensus 166 y~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~-------~~~~~g--lessavaa 236 (350)
T KOG0641|consen 166 YITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDN-------DFHDGG--LESSAVAA 236 (350)
T ss_pred EEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccC-------cccCCC--cccceeEE
Confidence 33667777788888888876555433222 111111 13458999
Q ss_pred EEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 233 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 233 ~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
++..|.|+.|++|-.|..-.+||++.+++++.+..|...|.||-.
T Consensus 237 v~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrf 281 (350)
T KOG0641|consen 237 VAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRF 281 (350)
T ss_pred EEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEe
Confidence 999999999999999999999999999999999999999999854
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.1e-17 Score=139.85 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=135.2
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC-CCcceEEEEEC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSLS 178 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~s 178 (279)
.+....+.+|+............+...|+++.|+++|++|++|..+|.|.|||....+.+.. ... |...|-+++|.
T Consensus 193 Valg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~---~~~~h~~rvg~laW~ 269 (484)
T KOG0305|consen 193 VALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT---LRGSHASRVGSLAWN 269 (484)
T ss_pred EEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc---ccCCcCceeEEEecc
Confidence 44566788888777665545555589999999999999999999999999999988766554 344 88899999997
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 179 p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
+..+.+|+.|+.|..+|++..+.... . -.+|.+.|..++|++|+.+||+|+.|+.+.|||...
T Consensus 270 --~~~lssGsr~~~I~~~dvR~~~~~~~-~--------------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 270 --SSVLSSGSRDGKILNHDVRISQHVVS-T--------------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS 332 (484)
T ss_pred --CceEEEecCCCcEEEEEEecchhhhh-h--------------hhcccceeeeeEECCCCCeeccCCCccceEeccCCC
Confidence 67899999999999999998765322 1 123778999999999999999999999999999998
Q ss_pred CeEEEEEeCCCcceeEEEee
Q 023642 259 NKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 259 ~~~~~~~~~h~~~v~~v~~~ 278 (279)
.++..++..|...|.++.+|
T Consensus 333 ~~p~~~~~~H~aAVKA~awc 352 (484)
T KOG0305|consen 333 PEPKFTFTEHTAAVKALAWC 352 (484)
T ss_pred ccccEEEeccceeeeEeeeC
Confidence 99999999999999999987
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-17 Score=125.67 Aligned_cols=165 Identities=13% Similarity=0.161 Sum_probs=130.1
Q ss_pred eccccceEeeeeecCCC---CceeeCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEE
Q 023642 100 SAADCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD 174 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~---~~~l~~h~~~V~~~~~sp--d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 174 (279)
.+.|+.+.+....+..+ ...|.||.++|..++|.. -|.+||+++.||+|.||.-..++ ..+......|...|.+
T Consensus 29 csSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNs 107 (299)
T KOG1332|consen 29 CSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNS 107 (299)
T ss_pred ecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc-hhhhhhhhhhccccee
Confidence 56788888877766544 345899999999999975 89999999999999999988873 2333445789999999
Q ss_pred EEECCC--CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC---C----------
Q 023642 175 TSLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---G---------- 239 (279)
Q Consensus 175 ~~~sp~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---g---------- 239 (279)
++|.|. |-.|++++.||.|.|.+.++...-...+.. ..|...|++++|.|. |
T Consensus 108 V~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~-------------~aH~~GvnsVswapa~~~g~~~~~~~~~~ 174 (299)
T KOG1332|consen 108 VAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV-------------FAHEIGVNSVSWAPASAPGSLVDQGPAAK 174 (299)
T ss_pred ecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh-------------hccccccceeeecCcCCCccccccCcccc
Confidence 999996 457899999999999988765221111111 126678999999986 5
Q ss_pred -CEEEEecCCCeEEEEECCCCe--EEEEEeCCCcceeEEEee
Q 023642 240 -RELVAGSSDDCIYVYDLEANK--LSLRILAHTVNIALWITC 278 (279)
Q Consensus 240 -~~l~t~s~d~~i~vwd~~~~~--~~~~~~~h~~~v~~v~~~ 278 (279)
+.|++|+.|..|+||+...++ .-.+|++|.+.|+.|.+|
T Consensus 175 ~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwa 216 (299)
T KOG1332|consen 175 VKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWA 216 (299)
T ss_pred cceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhc
Confidence 569999999999999998764 446689999999988765
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-17 Score=134.06 Aligned_cols=136 Identities=16% Similarity=0.183 Sum_probs=114.8
Q ss_pred eeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeE----EeeeeeccCCCcceEEEEECCCC-CEEEEEeCCCe
Q 023642 119 PVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPI 192 (279)
Q Consensus 119 ~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~ 192 (279)
.+.||+++|..++|+| +...+|+|+.|.+|.||.+..+-. ......+.+|...|--++|+|.. +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4789999999999999 667889999999999999875421 11223467999999999999965 67899999999
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcc
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVN 271 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~ 271 (279)
|.+|++.+|+...... |...|++++|+.||.+|+|.+.|..|+|||.++++.+..-.+|.+.
T Consensus 156 v~iWnv~tgeali~l~-----------------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~ 217 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-----------------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA 217 (472)
T ss_pred EEEEeccCCceeeecC-----------------CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC
Confidence 9999999998643211 5568999999999999999999999999999999999988888753
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-17 Score=143.14 Aligned_cols=161 Identities=13% Similarity=0.102 Sum_probs=131.5
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
++.|+++..|++.......++.+....|..++|+| .+..|+++...|.+.+||++...... ..+..|.++|.++.|+
T Consensus 152 GSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~--~k~~AH~GpV~c~nwh 229 (839)
T KOG0269|consen 152 GSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE--KKLTAHNGPVLCLNWH 229 (839)
T ss_pred cCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH--HHhhcccCceEEEeec
Confidence 57899999999999988889999999999999999 78899999999999999999764322 2367999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCE-EEEec--CCCeEEEEE
Q 023642 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-LVAGS--SDDCIYVYD 255 (279)
Q Consensus 179 p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~t~s--~d~~i~vwd 255 (279)
|++.+||+|+.|++|+|||..+++......+. ...++.+++|-|..++ |++++ .|-.|+|||
T Consensus 230 Pnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn---------------Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 230 PNREWLATGGRDKMVKIWDMTDSRAKPKHTIN---------------TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred CCCceeeecCCCccEEEEeccCCCccceeEEe---------------ecceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 99999999999999999999876653322221 1238999999998664 66665 477899999
Q ss_pred CCCC-eEEEEEeCCCcceeEEEe
Q 023642 256 LEAN-KLSLRILAHTVNIALWIT 277 (279)
Q Consensus 256 ~~~~-~~~~~~~~h~~~v~~v~~ 277 (279)
++-. -+..++.-|...++.+.+
T Consensus 295 vrRPYIP~~t~~eH~~~vt~i~W 317 (839)
T KOG0269|consen 295 VRRPYIPYATFLEHTDSVTGIAW 317 (839)
T ss_pred eccccccceeeeccCccccceec
Confidence 9743 466888889888776654
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.5e-17 Score=140.94 Aligned_cols=148 Identities=15% Similarity=0.102 Sum_probs=126.5
Q ss_pred ccCCCCeee---ccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC
Q 023642 92 NYSGRGRFS---AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL 168 (279)
Q Consensus 92 ~~~~~~~~~---~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (279)
.++|+++|. --|.++.++.+.+..-...+.||.-||.|+.+|||++++++|+.|..|++|-++=|.|-.. +.+|
T Consensus 515 ~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS---~fAH 591 (888)
T KOG0306|consen 515 SVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS---FFAH 591 (888)
T ss_pred EEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh---hhcc
Confidence 468888873 3477777777666665566899999999999999999999999999999999999987654 5689
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC
Q 023642 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d 248 (279)
...|.++.|-|+...+++++.|+.++-||-..-+..... .+|...|+|++.+|+|.+++++|+|
T Consensus 592 dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L----------------~~H~~ev~cLav~~~G~~vvs~shD 655 (888)
T KOG0306|consen 592 DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL----------------DGHHSEVWCLAVSPNGSFVVSSSHD 655 (888)
T ss_pred cCceeEEEEcccceeEEEecCcceEEeechhhhhhheee----------------ccchheeeeeEEcCCCCeEEeccCC
Confidence 999999999999999999999999999998876653221 1377899999999999999999999
Q ss_pred CeEEEEECCC
Q 023642 249 DCIYVYDLEA 258 (279)
Q Consensus 249 ~~i~vwd~~~ 258 (279)
.+|++|....
T Consensus 656 ~sIRlwE~td 665 (888)
T KOG0306|consen 656 KSIRLWERTD 665 (888)
T ss_pred ceeEeeeccC
Confidence 9999999754
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-16 Score=143.47 Aligned_cols=173 Identities=14% Similarity=0.129 Sum_probs=135.4
Q ss_pred ccCCCCee---eccccceEeeeeecC-------C-----------CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPV-------N-----------GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRI 150 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~-------~-----------~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~i 150 (279)
.++++|++ ++.|+.+.+|...+. . ...++.+|+..|..++|+|++.+|++++.|++|.|
T Consensus 76 R~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVii 155 (942)
T KOG0973|consen 76 RFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVII 155 (942)
T ss_pred EECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEE
Confidence 46777776 456667778877630 0 11247899999999999999999999999999999
Q ss_pred EEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccE
Q 023642 151 YDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI 230 (279)
Q Consensus 151 wd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 230 (279)
|+..+.+.+.. +.+|.+.|..+.|.|-|+|||+-+.|+++++|++.+-...........+. .-....
T Consensus 156 wn~~tF~~~~v---l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~----------~~~T~f 222 (942)
T KOG0973|consen 156 WNAKTFELLKV---LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES----------PLTTFF 222 (942)
T ss_pred Eccccceeeee---eecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC----------CCccee
Confidence 99999855543 67999999999999999999999999999999977644433322211111 122357
Q ss_pred EEEEEecCCCEEEEecC----CCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 231 FSLKFSTDGRELVAGSS----DDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 231 ~~~~~sp~g~~l~t~s~----d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
..+.|||||.+|++.-. -.++.|.+..+-+.-..|-||..++.++..
T Consensus 223 ~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrF 273 (942)
T KOG0973|consen 223 LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRF 273 (942)
T ss_pred eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEe
Confidence 89999999999998542 337999999888889999999999988764
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-17 Score=142.05 Aligned_cols=170 Identities=12% Similarity=0.222 Sum_probs=137.3
Q ss_pred eccccceEeeeeecCCC------CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe--EEeeeeeccCCCcc
Q 023642 100 SAADCCHMLSRYLPVNG------PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWT 171 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~------~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~ 171 (279)
++.|+.++.|....... ...++.|.++|+.++..-+++.|++++.|-+|++|+...+. +.. .++.|..+
T Consensus 43 gGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s---tir~H~DY 119 (735)
T KOG0308|consen 43 GGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS---TIRTHKDY 119 (735)
T ss_pred cCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh---hhhcccch
Confidence 56788899998765433 23478999999999999999999999999999999998763 333 36799999
Q ss_pred eEEEEE-CCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCe
Q 023642 172 VTDTSL-SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (279)
Q Consensus 172 v~~~~~-sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~ 250 (279)
|.++++ .++...+|+|+.|+.|++||+.++........... ..+... .|+...|++++..+.|..+++|+..+.
T Consensus 120 Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~----t~~sl~-sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 120 VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV----TVNSLG-SGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc----ccccCC-CCCccceeeeecCCcceEEEecCcccc
Confidence 999999 88889999999999999999998844111111110 111111 146679999999999999999999999
Q ss_pred EEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 251 IYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 251 i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+++||-++++.+..++||+..|..+..
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~ 221 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLV 221 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEE
Confidence 999999999999999999999998864
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=144.43 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=123.4
Q ss_pred cccceEeeeeecCCC------------CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC----C---------
Q 023642 102 ADCCHMLSRYLPVNG------------PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER----G--------- 156 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~------------~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~----~--------- 156 (279)
.|+...+|+..+.-. .-+...|.+.|+|+.|+|||++||+|+.|+.|.||.... .
T Consensus 35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~ 114 (942)
T KOG0973|consen 35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAK 114 (942)
T ss_pred ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccccccccccc
Confidence 355556776654321 123678999999999999999999999999999999872 0
Q ss_pred --eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEE
Q 023642 157 --WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK 234 (279)
Q Consensus 157 --~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 234 (279)
+.......+.+|...|.+++|+|++.+|++++.|++|.||+.++.+...... +|.+.|-.+.
T Consensus 115 ~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~----------------~H~s~VKGvs 178 (942)
T KOG0973|consen 115 NVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR----------------GHQSLVKGVS 178 (942)
T ss_pred ccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee----------------cccccccceE
Confidence 1122334568999999999999999999999999999999999986543322 3777999999
Q ss_pred EecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCc
Q 023642 235 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 235 ~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~ 270 (279)
|.|-|+||++-+.|++|+||++.+-...+++.++..
T Consensus 179 ~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~ 214 (942)
T KOG0973|consen 179 WDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE 214 (942)
T ss_pred ECCccCeeeeecCCceEEEEEcccceeeEeeccchh
Confidence 999999999999999999999877777777776543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-16 Score=124.98 Aligned_cols=148 Identities=20% Similarity=0.212 Sum_probs=116.4
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeee
Q 023642 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (279)
Q Consensus 127 V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~ 206 (279)
..|+.|++.|.+||+|..||.|.|||+.+....+ .+.+|-.+|.+++||+||+.|++++.|..|.+||+..|.+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 7899999999999999999999999999875333 3568888999999999999999999999999999999987655
Q ss_pred eccccccceeEEeeCCC-----------------------------CC-ccccEEEEEEecCCCEEEEecCCCeEEEEEC
Q 023642 207 ANVTEIHDGLDFSAADD-----------------------------GG-YSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~-----------------------------~~-~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~ 256 (279)
..+.....++.|.+... .+ -.....+..|.+.|+++++|..-|.+.++|.
T Consensus 103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 55555444444444333 00 1112223358888999999999999999999
Q ss_pred CCCeEEEEEeCCC-cceeEEEe
Q 023642 257 EANKLSLRILAHT-VNIALWIT 277 (279)
Q Consensus 257 ~~~~~~~~~~~h~-~~v~~v~~ 277 (279)
.+-+++..++-.. ..|.+++.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~ 204 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIV 204 (405)
T ss_pred chheeeeeeeechheeeeEEEE
Confidence 9999999888655 56666553
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-16 Score=138.43 Aligned_cols=160 Identities=15% Similarity=0.180 Sum_probs=127.3
Q ss_pred hhccccCccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEee
Q 023642 85 MLAGREGNYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK 161 (279)
Q Consensus 85 ~~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~ 161 (279)
.+..+...++.+|.+ ++.|-.+.+-+.........+.+|.++|.++.|+|.+.+||+.+-||.|++||+.++.....
T Consensus 96 tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t 175 (933)
T KOG1274|consen 96 TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT 175 (933)
T ss_pred eccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh
Confidence 344555667777765 45677788888888888889999999999999999999999999999999999998754332
Q ss_pred eeecc-----CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEe
Q 023642 162 DILAK-----SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (279)
Q Consensus 162 ~~~~~-----~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 236 (279)
..... .....+..++|+|+|..++....|+.|++|+..+........... +...+.++.|+
T Consensus 176 l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~--------------~ss~~~~~~ws 241 (933)
T KOG1274|consen 176 LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL--------------SSSKFSDLQWS 241 (933)
T ss_pred cccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc--------------cccceEEEEEc
Confidence 21111 113456889999999999999999999999999887644332211 34458999999
Q ss_pred cCCCEEEEecCCCeEEEEECCC
Q 023642 237 TDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 237 p~g~~l~t~s~d~~i~vwd~~~ 258 (279)
|+|+|||+++.++.|.|||+.+
T Consensus 242 PnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 242 PNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCCcEEeeeccCCcEEEEeccc
Confidence 9999999999999999999985
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=133.17 Aligned_cols=159 Identities=16% Similarity=0.142 Sum_probs=118.8
Q ss_pred eccccceEeeeeecCCCCce-e-----eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCc--c
Q 023642 100 SAADCCHMLSRYLPVNGPWP-V-----DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW--T 171 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~-l-----~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~ 171 (279)
.+.|+++.+|++........ + .+-.-+++.++|+|||++||+|..||.|.+|+......-.....-..|.. .
T Consensus 287 ~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~ 366 (641)
T KOG0772|consen 287 CSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQD 366 (641)
T ss_pred ecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCc
Confidence 56789999999887654432 2 23456789999999999999999999999999854322112222345655 8
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC----
Q 023642 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---- 247 (279)
Q Consensus 172 v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~---- 247 (279)
|++++||+||++|++-+.|+++++||++..+.. +....... ....-+.++|||+.++++||..
T Consensus 367 Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp-L~~~tgL~------------t~~~~tdc~FSPd~kli~TGtS~~~~ 433 (641)
T KOG0772|consen 367 ITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP-LNVRTGLP------------TPFPGTDCCFSPDDKLILTGTSAPNG 433 (641)
T ss_pred eeEEEeccccchhhhccCCCceeeeeccccccc-hhhhcCCC------------ccCCCCccccCCCceEEEecccccCC
Confidence 999999999999999999999999999986542 11111111 2235678999999999999763
Q ss_pred --CCeEEEEECCCCeEEEEEeCCCcc
Q 023642 248 --DDCIYVYDLEANKLSLRILAHTVN 271 (279)
Q Consensus 248 --d~~i~vwd~~~~~~~~~~~~h~~~ 271 (279)
.+++++||..+-..++++.-....
T Consensus 434 ~~~g~L~f~d~~t~d~v~ki~i~~aS 459 (641)
T KOG0772|consen 434 MTAGTLFFFDRMTLDTVYKIDISTAS 459 (641)
T ss_pred CCCceEEEEeccceeeEEEecCCCce
Confidence 457999999999988888755433
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-16 Score=123.84 Aligned_cols=138 Identities=15% Similarity=0.207 Sum_probs=99.5
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-----EEeeeee-----------------------------
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-----KIQKDIL----------------------------- 164 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~----------------------------- 164 (279)
.|++|.+.|++++|+.||+.|++++.|+.|++|+++.-. +++....
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 489999999999999999999999999999999987421 1110000
Q ss_pred ----------------------ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeec-cccccceeEEeeC
Q 023642 165 ----------------------AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN-VTEIHDGLDFSAA 221 (279)
Q Consensus 165 ----------------------~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~ 221 (279)
...|.-.+..+.....+.+|++++.|..|.+|+++ |+...... ..........++.
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~ 239 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD 239 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence 00222334445555556799999999999999999 55432222 1111112223333
Q ss_pred CC---------------------------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 222 DD---------------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 222 ~~---------------------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
+. +||...|..++|+++.+.++|.|.||++++||..
T Consensus 240 GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 240 GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 32 7899999999999999999999999999999974
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.9e-16 Score=122.01 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=145.3
Q ss_pred chhhhhccccCcc--------CCCCeeeccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 023642 81 STVKMLAGREGNY--------SGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYD 152 (279)
Q Consensus 81 ~~~~~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd 152 (279)
..++.+.||..++ .|...-.++|.+..+|.+........+.||.+.|+++.|+|.+.++++++.|++-.||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 3456666666543 22223367888999999998888888999999999999999999999999999999996
Q ss_pred c------CCC------------------------------eEE-eeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 153 V------ERG------------------------------WKI-QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 153 ~------~~~------------------------------~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
. ... ..+ .....+.+|.+.|.+..|-..|+.+++++.|.+..+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 2 110 000 111235688889999999999999999999999999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC-eEEEEEeCCCcceeE
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTVNIAL 274 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~-~~~~~~~~h~~~v~~ 274 (279)
||+++++...... ||....+.++-+|..+++++++.|.+.++||++.. ..+..|+||...|++
T Consensus 299 wDVEtge~v~~Lt----------------GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 299 WDVETGEVVNILT----------------GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS 362 (481)
T ss_pred eeeccCceecccc----------------CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence 9999999754332 36668888888999999999999999999999853 477899999999999
Q ss_pred EEe
Q 023642 275 WIT 277 (279)
Q Consensus 275 v~~ 277 (279)
++.
T Consensus 363 ~vF 365 (481)
T KOG0300|consen 363 VVF 365 (481)
T ss_pred EEE
Confidence 875
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.6e-16 Score=121.56 Aligned_cols=146 Identities=13% Similarity=0.135 Sum_probs=118.7
Q ss_pred CCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCe------------EEeeeeeccCCCcceEEEEECC-CC
Q 023642 116 GPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGW------------KIQKDILAKSLRWTVTDTSLSP-DQ 181 (279)
Q Consensus 116 ~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~~~~~~~~v~~~~~sp-~~ 181 (279)
.......|.+.|+++.+.| .|+++++|+.||.|.+||+.... ++........|+..|..+.|-| |.
T Consensus 35 d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 35 DKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred CcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence 3445677999999999998 88999999999999999997532 1111123356788899999999 56
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC---CCEEEEecCCCeEEEEECCC
Q 023642 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 182 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~t~s~d~~i~vwd~~~ 258 (279)
-.+.+++.|.++++||+.+.+.....+. .+.|++-++||- ..++++|..|-.|++.|+.+
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a~~F~m-----------------e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S 177 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEAVDFKM-----------------EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS 177 (397)
T ss_pred ceeecccccceEEEeecccceeeEEeec-----------------CceeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence 6788899999999999999887544332 237888888883 55788888999999999999
Q ss_pred CeEEEEEeCCCcceeEEEee
Q 023642 259 NKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 259 ~~~~~~~~~h~~~v~~v~~~ 278 (279)
|.+.+++.||.+.|-+|-+|
T Consensus 178 Gs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 178 GSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred CcceeeeccccCceEEEEec
Confidence 99999999999999998776
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-15 Score=131.62 Aligned_cols=186 Identities=13% Similarity=0.135 Sum_probs=138.6
Q ss_pred cccCCccccccccCCCCCcccchhhhhccccCccCCC-----Ce-e-eccccceEeeeeecCCCCceeeCCCCCeEEEEE
Q 023642 60 LKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGR-----GR-F-SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQF 132 (279)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~-~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~ 132 (279)
+..+..|..+..+......+. ..+.+|..+++.. +. + ++-|++.++|..-.. ...+.+|+..|.+++.
T Consensus 74 l~~g~~D~~i~v~~~~~~~P~---~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l--~~~l~gH~asVWAv~~ 148 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQAEPL---YTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGEL--VYSLQGHTASVWAVAS 148 (745)
T ss_pred eEeecccceEEEEecCCCCch---hhhhccccceeeeecCCcCceEecccccceEEecchhh--hcccCCcchheeeeee
Confidence 334555555665555555444 5577777654322 22 2 466899999986543 3448999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccc
Q 023642 133 SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEI 212 (279)
Q Consensus 133 spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 212 (279)
-|++ .++||+.|.+|++|.-. ++++ .+.+|.+.|+++++-|++ .+++++.||.|++|++. |++...
T Consensus 149 l~e~-~~vTgsaDKtIklWk~~--~~l~---tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~-ge~l~~------ 214 (745)
T KOG0301|consen 149 LPEN-TYVTGSADKTIKLWKGG--TLLK---TFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLD-GEVLLE------ 214 (745)
T ss_pred cCCC-cEEeccCcceeeeccCC--chhh---hhccchhheeeeEEecCC-CeEeecCCceEEEEecc-Cceeee------
Confidence 9988 89999999999999863 3343 367899999999998764 67799999999999994 444221
Q ss_pred cceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 213 HDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 213 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
. .||+.-|++++..+++..++++++|++++||+.. ++.+.+.-..-.|+++.
T Consensus 215 -----~-----~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~ 266 (745)
T KOG0301|consen 215 -----M-----HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAK 266 (745)
T ss_pred -----e-----eccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEE
Confidence 1 1377799999988889999999999999999986 78888876555666653
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=110.82 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=119.0
Q ss_pred ccccceEeeeeecCCCCceeeCCCCCeEEE-EECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeec-c--C-CCcceEEE
Q 023642 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVS-QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-K--S-LRWTVTDT 175 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~-~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~--~-~~~~v~~~ 175 (279)
+.|+.+.+-+.-..++.+.+.+|++.|.++ .| ++-++++|++|.+|++||++-..++...-.. . + ..+.|.++
T Consensus 160 agdc~iy~tdc~~g~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 160 AGDCKIYITDCGRGQGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred CCcceEEEeecCCCCcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence 345566666666667777899999999887 36 5789999999999999999877666543211 1 1 12579999
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 176 SLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 176 ~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
+..|.|++|++|-.|..+.+||++.++.+... .+ |+..|.++.|+|...++++++.|..|++-|
T Consensus 238 ~vdpsgrll~sg~~dssc~lydirg~r~iq~f-----------~p-----hsadir~vrfsp~a~yllt~syd~~ikltd 301 (350)
T KOG0641|consen 238 AVDPSGRLLASGHADSSCMLYDIRGGRMIQRF-----------HP-----HSADIRCVRFSPGAHYLLTCSYDMKIKLTD 301 (350)
T ss_pred EECCCcceeeeccCCCceEEEEeeCCceeeee-----------CC-----CccceeEEEeCCCceEEEEecccceEEEee
Confidence 99999999999999999999999999875432 22 677999999999999999999999999999
Q ss_pred CCCC----eEEEEEeCCCcce
Q 023642 256 LEAN----KLSLRILAHTVNI 272 (279)
Q Consensus 256 ~~~~----~~~~~~~~h~~~v 272 (279)
+... -++.....|++.+
T Consensus 302 lqgdla~el~~~vv~ehkdk~ 322 (350)
T KOG0641|consen 302 LQGDLAHELPIMVVAEHKDKA 322 (350)
T ss_pred cccchhhcCceEEEEeccCce
Confidence 8631 1333444565543
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.4e-16 Score=121.57 Aligned_cols=127 Identities=16% Similarity=0.213 Sum_probs=107.1
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC--EEEEEeCCCeEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR--HLVYASMSPIVHI 195 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~d~~i~i 195 (279)
+.+..|.+.++++|+ ++.++|+|+.|.+|+|||+.+...+.. +..|.+.|+++.|.|.-. .|++|+.||.|.+
T Consensus 37 F~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~---ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 37 FAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGI---LLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred ccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcc---eeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 446889999999999 579999999999999999998765544 457889999999999765 8999999999999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEE
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI 265 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~ 265 (279)
|++..-.+....+ +|.+.|+.++.+|.|++.++.+.|+.+++||+-.|+.-..+
T Consensus 112 w~~~~W~~~~slK----------------~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 112 WRVGSWELLKSLK----------------AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred EEcCCeEEeeeec----------------ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee
Confidence 9998765543322 27779999999999999999999999999999887644433
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.1e-15 Score=129.33 Aligned_cols=165 Identities=19% Similarity=0.222 Sum_probs=128.7
Q ss_pred cccceEeeeeecCCC-Cceee-----CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEE
Q 023642 102 ADCCHMLSRYLPVNG-PWPVD-----QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT 175 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~-~~~l~-----~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 175 (279)
.+.....|++..... .+++. .....+++++.++-|++.+.|...|.|-+|++.+|.....+.....|.++|+++
T Consensus 420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gl 499 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGL 499 (910)
T ss_pred CcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEE
Confidence 344556677766444 33332 234789999999999999999999999999999996665543346899999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC-------------------------CCccccE
Q 023642 176 SLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD-------------------------GGYSFGI 230 (279)
Q Consensus 176 ~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~v 230 (279)
+...-++.+++++.+|.+++||..+...............+.+....+ .||...|
T Consensus 500 a~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nri 579 (910)
T KOG1539|consen 500 AVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRI 579 (910)
T ss_pred EecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccce
Confidence 999989999999999999999998877544444333333332222211 6789999
Q ss_pred EEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 231 ~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
++++|||||++|++++.|++|++||+.++.++..+.
T Consensus 580 td~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~ 615 (910)
T KOG1539|consen 580 TDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL 615 (910)
T ss_pred eeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe
Confidence 999999999999999999999999999999887765
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=120.20 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=118.7
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECC---CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEE
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA---DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp---d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 176 (279)
++-|..+.+|+..+.+... ....++.|++-++|| ...++|+|..|-+|++-|+.+|.+-+. +.+|.+.|.++.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~-~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~---LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAV-DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT---LSGHRDGVLAVE 195 (397)
T ss_pred ccccceEEEeecccceeeE-EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee---eccccCceEEEE
Confidence 4568899999876655433 345678899999999 355788999999999999999987665 679999999999
Q ss_pred ECCCCCE-EEEEeCCCeEEEEECCCCc-eeeeeccccccceeE-EeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEE
Q 023642 177 LSPDQRH-LVYASMSPIVHIVDVGSGT-MESLANVTEIHDGLD-FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV 253 (279)
Q Consensus 177 ~sp~~~~-l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~v 253 (279)
|+|...+ |++|+.||.|++||++... +.... ..+.+.. -.-..+..|.+.++.++|+.++.++++.+.|..+++
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~l---D~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVL---DQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEe---ecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 9998876 7899999999999998752 21111 1111100 000112348889999999999999999999999999
Q ss_pred EECCCCe
Q 023642 254 YDLEANK 260 (279)
Q Consensus 254 wd~~~~~ 260 (279)
|+...|+
T Consensus 273 wn~~~G~ 279 (397)
T KOG4283|consen 273 WNMESGR 279 (397)
T ss_pred eecccCc
Confidence 9998775
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-16 Score=130.68 Aligned_cols=172 Identities=13% Similarity=0.132 Sum_probs=131.0
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCce--eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeecc
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPWP--VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK 166 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~~--l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 166 (279)
.+.++|+- .+.-.++.+|++........ +..-.-..++++.+||.+..+++..||.|.|||+.....++. +.
T Consensus 472 kL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrq---fq 548 (705)
T KOG0639|consen 472 KLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQ---FQ 548 (705)
T ss_pred EecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeec---cc
Confidence 34555542 34455677888876544332 333345678899999999999999999999999998766665 68
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC-----------------------
Q 023642 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD----------------------- 223 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 223 (279)
+|...+.++.+++||..|.+|+.|.+||.||++++.......+......+.+++.++
T Consensus 549 GhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyq 628 (705)
T KOG0639|consen 549 GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ 628 (705)
T ss_pred CCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcccee
Confidence 999999999999999999999999999999999987643333222222222333322
Q ss_pred -CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 224 -GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 224 -~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
.-|.+.|.++.|.+.|+++++.+.|+.+-.|...-|..+...+
T Consensus 629 lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk 672 (705)
T KOG0639|consen 629 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 672 (705)
T ss_pred ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc
Confidence 2367889999999999999999999999999998887776665
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=131.53 Aligned_cols=150 Identities=16% Similarity=0.198 Sum_probs=127.6
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.|.++.+|..-...+-.++.+|.+.|.+++...++. +++||.|.++++|-...... .+.+|+..|+++++-|
T Consensus 77 g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~-----~l~gH~asVWAv~~l~ 150 (745)
T KOG0301|consen 77 GGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVY-----SLQGHTASVWAVASLP 150 (745)
T ss_pred ecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhc-----ccCCcchheeeeeecC
Confidence 67888999898888888889999999999999988888 99999999999998765322 2579999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
++ .+++|+.|++|++|.- ++... +|.+ |...|..+++-|++ .|++++.||.|+.|++ +|
T Consensus 151 e~-~~vTgsaDKtIklWk~--~~~l~-----------tf~g-----HtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~g 209 (745)
T KOG0301|consen 151 EN-TYVTGSADKTIKLWKG--GTLLK-----------TFSG-----HTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DG 209 (745)
T ss_pred CC-cEEeccCcceeeeccC--Cchhh-----------hhcc-----chhheeeeEEecCC-CeEeecCCceEEEEec-cC
Confidence 88 8889999999999976 33322 2333 66699999998775 4569999999999999 79
Q ss_pred eEEEEEeCCCcceeEEE
Q 023642 260 KLSLRILAHTVNIALWI 276 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v~ 276 (279)
+++.++.||+..|+++-
T Consensus 210 e~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 210 EVLLEMHGHTNFVYSIS 226 (745)
T ss_pred ceeeeeeccceEEEEEE
Confidence 99999999999999875
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.5e-15 Score=122.48 Aligned_cols=182 Identities=12% Similarity=0.094 Sum_probs=127.8
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL 168 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (279)
.++++|+| ++.|+.+.+|+..+.+....+.+|.+.|.+++|-.....|++++.|..|++|+++....+.. +.+|
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet---lyGH 285 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET---LYGH 285 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH---HhCC
Confidence 35777776 34566777999988888889999999999999999889999999999999999987644332 4577
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeC-------CC------------------
Q 023642 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA-------DD------------------ 223 (279)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~------------------ 223 (279)
.+.|.++....-++.+-.|+.|+++++|++......-........+.+.|-.+ .+
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEee
Confidence 77777777666666666666677777776643222111111101111111111 00
Q ss_pred -----------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC----eEEEEEeCCCcceeEEEe
Q 023642 224 -----------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----KLSLRILAHTVNIALWIT 277 (279)
Q Consensus 224 -----------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~----~~~~~~~~h~~~v~~v~~ 277 (279)
..+..||++++..|...++++|+.+|+|++|.+..+ .++..+. -.+.||++..
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f 433 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAF 433 (479)
T ss_pred ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEE
Confidence 123469999999999999999999999999999887 3555555 5677777763
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.7e-15 Score=116.91 Aligned_cols=151 Identities=14% Similarity=0.168 Sum_probs=118.3
Q ss_pred cccCccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeee
Q 023642 88 GREGNYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL 164 (279)
Q Consensus 88 ~~~~~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 164 (279)
.....|++.|.+ +..++.+++|++.+......+.+|.-+|++++||+||++|++++.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 444567777766 5678999999999988888899999999999999999999999999999999999887665432
Q ss_pred ccCCCcceEEE-----------------------------------------------EECCCCCEEEEEeCCCeEEEEE
Q 023642 165 AKSLRWTVTDT-----------------------------------------------SLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 165 ~~~~~~~v~~~-----------------------------------------------~~sp~~~~l~~~~~d~~i~i~d 197 (279)
+ .++|+.+ .|.+.|++|++|...|.+.++|
T Consensus 105 f---~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 105 F---DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred c---cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 1 1122222 2555577888888888888888
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
..+.++....+... .+.|..+.|+-.|++|+.-+.|+.|++|+++
T Consensus 182 a~t~e~vas~rits---------------~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 182 AETLECVASFRITS---------------VQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred cchheeeeeeeech---------------heeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 88777654433321 1368889999999999999999999999986
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-15 Score=121.11 Aligned_cols=152 Identities=19% Similarity=0.172 Sum_probs=115.6
Q ss_pred CCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCe------EEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 023642 124 TSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGW------KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (279)
Q Consensus 124 ~~~V~~~~~spd~~-~l~s~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~ 196 (279)
..+|+++.|.++.. +|++|+.|..|++|-+..+. .+.-...+..|...|+.+.|+|+|..|++|+.+|.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 47899999999666 99999999999999886532 333334567899999999999999999999999999999
Q ss_pred ECCCCceeeeec-cccccc-eeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeE
Q 023642 197 DVGSGTMESLAN-VTEIHD-GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIAL 274 (279)
Q Consensus 197 d~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (279)
-...-....... .....+ ...... ..+|...|+.++|+|++.++++++.|.++++||+..|+.++.+.+|...|+.
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~--lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKV--LRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG 170 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEE--ecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccce
Confidence 876311100000 000000 000000 1236679999999999999999999999999999999999999999998887
Q ss_pred EEe
Q 023642 275 WIT 277 (279)
Q Consensus 275 v~~ 277 (279)
+.+
T Consensus 171 vaw 173 (434)
T KOG1009|consen 171 VAW 173 (434)
T ss_pred eec
Confidence 754
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-15 Score=121.14 Aligned_cols=143 Identities=19% Similarity=0.245 Sum_probs=110.7
Q ss_pred ceEeeeeecCCCCceeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEeeeee-------------------
Q 023642 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDIL------------------- 164 (279)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~------------------- 164 (279)
.+-+|+.....+...+.--.+.|.++.|+|-. ..|++++.|+.|.+||++++.++.+++.
T Consensus 168 ~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a 247 (433)
T KOG0268|consen 168 QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAA 247 (433)
T ss_pred eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeec
Confidence 34455555555555566677889999999955 5667788999999999998876655431
Q ss_pred --------------------ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCC
Q 023642 165 --------------------AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224 (279)
Q Consensus 165 --------------------~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (279)
..+|.+.|.+++|+|.|+.+++||.|++|+||.+..+....+....+
T Consensus 248 ~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR------------- 314 (433)
T KOG0268|consen 248 NEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR------------- 314 (433)
T ss_pred cccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh-------------
Confidence 23677789999999999999999999999999998876543322211
Q ss_pred CccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEE
Q 023642 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (279)
Q Consensus 225 ~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~ 262 (279)
-+.|.++.||-|.+++++||.|+.|++|.....+.+
T Consensus 315 --Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 315 --MQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred --hheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 137999999999999999999999999998755433
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=126.24 Aligned_cols=142 Identities=18% Similarity=0.136 Sum_probs=121.5
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee--------------ec-cCCCcceEEEEECCCCC
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI--------------LA-KSLRWTVTDTSLSPDQR 182 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------------~~-~~~~~~v~~~~~sp~~~ 182 (279)
..+..|.-++.+++++||..+.++++.+++|.-|++.++....-.+ .. ..|...+.+++.+|||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 4567899999999999999999999999999999998885431111 11 26778899999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEE
Q 023642 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (279)
Q Consensus 183 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~ 262 (279)
||++|+.|..|.|||..+.+.+... .+|.+.|.+++|-.....|++++.|++|++|++.....+
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~----------------~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v 279 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVF----------------KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV 279 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcc----------------cccccceeeeeeecCccceeeeecCCceEEEehhHhHHH
Confidence 9999999999999999998875432 137789999999877778999999999999999999999
Q ss_pred EEEeCCCcceeEE
Q 023642 263 LRILAHTVNIALW 275 (279)
Q Consensus 263 ~~~~~h~~~v~~v 275 (279)
.++.||++.|.++
T Consensus 280 etlyGHqd~v~~I 292 (479)
T KOG0299|consen 280 ETLYGHQDGVLGI 292 (479)
T ss_pred HHHhCCccceeee
Confidence 9999999988765
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-15 Score=130.39 Aligned_cols=146 Identities=20% Similarity=0.256 Sum_probs=115.5
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCC-----cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCe
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 192 (279)
+.+.||.-.|++++.+|+++++|+++... .|++|+..+-.... .+..|.-.|+.++|||||++|++.+.|++
T Consensus 519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~---~L~~HsLTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ---ELEGHSLTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh---eecccceEEEEEEECCCCcEEEEeecCce
Confidence 45789999999999999999999997643 68999987764443 35689989999999999999999999999
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC--eEEEEE--eCC
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLRI--LAH 268 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~--~~~~~~--~~h 268 (279)
+.+|........... |... +.|+-.|+++.|+|++.+|+|+|+|.+|+||..... +.+..+ ..+
T Consensus 596 ~sl~~~~~~~~~e~~----------fa~~--k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~ 663 (764)
T KOG1063|consen 596 VSLYEVQEDIKDEFR----------FACL--KAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKF 663 (764)
T ss_pred EEeeeeecccchhhh----------hccc--cccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhcc
Confidence 999988654432111 1111 237779999999999999999999999999999877 444442 346
Q ss_pred CcceeEEEee
Q 023642 269 TVNIALWITC 278 (279)
Q Consensus 269 ~~~v~~v~~~ 278 (279)
...|+++..+
T Consensus 664 ~~aVTAv~~~ 673 (764)
T KOG1063|consen 664 SLAVTAVAYL 673 (764)
T ss_pred CCceeeEEee
Confidence 7777776554
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=116.80 Aligned_cols=145 Identities=15% Similarity=0.069 Sum_probs=117.3
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC--CCCEEEEEeCCCeEEEEE
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~i~i~d 197 (279)
-++|.+.|-.+...--|++|++++.|++|+|+..+..........+.+|.+||+.++|.- -|.+||+++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 467888898888888899999999999999999987654344456789999999999954 799999999999999999
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC--CCEEEEecCCCeEEEEECCCC--e-EEEEEeCCCcce
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN--K-LSLRILAHTVNI 272 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~t~s~d~~i~vwd~~~~--~-~~~~~~~h~~~v 272 (279)
-.+++....... ..|...|++++|.|. |-.|++++.||.|.|.+.++. - .-.....|...|
T Consensus 87 e~~g~w~k~~e~--------------~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv 152 (299)
T KOG1332|consen 87 EENGRWTKAYEH--------------AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV 152 (299)
T ss_pred cCCCchhhhhhh--------------hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence 998864322111 127779999999986 678999999999999998764 2 234445899999
Q ss_pred eEEEee
Q 023642 273 ALWITC 278 (279)
Q Consensus 273 ~~v~~~ 278 (279)
++|.++
T Consensus 153 nsVswa 158 (299)
T KOG1332|consen 153 NSVSWA 158 (299)
T ss_pred ceeeec
Confidence 998764
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.7e-15 Score=119.36 Aligned_cols=196 Identities=13% Similarity=0.121 Sum_probs=130.0
Q ss_pred ccccccccCCCCCcccchhhhhccccCccCCCCee-eccccceEeeeeecCCCCceeeCCCCCeEEEEECCC---CCEEE
Q 023642 65 KEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRF-SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSAD---GSLFV 140 (279)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd---~~~l~ 140 (279)
+-+++..+.+..++......-+...-... +.--+ ++=|+...+|+. .+....++.||.++|.+++|.-. ...|+
T Consensus 86 eIEYv~~~~aP~pl~~~~hdDWVSsv~~~-~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fv 163 (423)
T KOG0313|consen 86 EIEYVEAITAPKPLQCFLHDDWVSSVKGA-SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFV 163 (423)
T ss_pred EEEEEEecCCCCccccccchhhhhhhccc-CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEE
Confidence 44666666666665542211111111111 11112 233566666654 23344568999999998887543 33699
Q ss_pred EEeCCCcEEEEEcCCCeEEe-eeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecccc--------
Q 023642 141 AGFQASQIRIYDVERGWKIQ-KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTE-------- 211 (279)
Q Consensus 141 s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------- 211 (279)
+++.|.++++|-.+.+.... ......+|...|-+++..++|..+++|+.|.+++||+..+...........
T Consensus 164 sas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~ 243 (423)
T KOG0313|consen 164 SASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKR 243 (423)
T ss_pred EecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhh
Confidence 99999999999998774322 222346999999999999999999999999999999943322111111000
Q ss_pred ------ccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 212 ------IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 212 ------~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
...-..+ .||..+|.++.|++ ...+++++.|.+|++||+.++.+..++.+.
T Consensus 244 ~~~~~~r~P~vtl-----~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ 300 (423)
T KOG0313|consen 244 EKEGGTRTPLVTL-----EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN 300 (423)
T ss_pred hhcccccCceEEe-----cccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC
Confidence 0000112 45888999999987 678889999999999999999988888753
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.5e-16 Score=123.19 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=122.2
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
..+.||.+.|..++.......+.+++.|.+.+||.+++|.|+.+ ..+|.+.|.+++|+|.+.++++++.|++..||.
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~---Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT---YTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceee---ecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 34789999999999888777899999999999999999999876 579999999999999999999999999999997
Q ss_pred CCCCceeeeeccccccce----------e-EE----eeCCC---------CCccccEEEEEEecCCCEEEEecCCCeEEE
Q 023642 198 VGSGTMESLANVTEIHDG----------L-DF----SAADD---------GGYSFGIFSLKFSTDGRELVAGSSDDCIYV 253 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~----------~-~~----~~~~~---------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~v 253 (279)
..-.-..+.......+.+ . .. ..++. .+|.+.|.+..|-..|+.+++++.|.+..+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 321111100000000000 0 00 00000 568889999999999999999999999999
Q ss_pred EECCCCeEEEEEeCCCcceeEEE
Q 023642 254 YDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 254 wd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
||+++|+++..+.||....+.+.
T Consensus 299 wDVEtge~v~~LtGHd~ELtHcs 321 (481)
T KOG0300|consen 299 WDVETGEVVNILTGHDSELTHCS 321 (481)
T ss_pred eeeccCceeccccCcchhccccc
Confidence 99999999999999998776553
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=113.99 Aligned_cols=172 Identities=15% Similarity=0.084 Sum_probs=125.7
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
++-|+.+++++.-.. .......|..++.+++|.+ ...+++|+-||.|+.+|+.++.... ...|..+|.++.+++
T Consensus 31 ssWDgslrlYdv~~~-~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~ 104 (323)
T KOG1036|consen 31 SSWDGSLRLYDVPAN-SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSY 104 (323)
T ss_pred EeccCcEEEEeccch-hhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCccee----eccCCCceEEEEeec
Confidence 566778887776444 3444567999999999997 5678999999999999999985433 468999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccc-------ccee-----------------------------------E
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEI-------HDGL-----------------------------------D 217 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------~~~~-----------------------------------~ 217 (279)
-...+++|+.|++|++||.+............. -..+ .
T Consensus 105 ~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~ 184 (323)
T KOG1036|consen 105 EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVA 184 (323)
T ss_pred cCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEE
Confidence 888999999999999999984222111100000 0000 0
Q ss_pred EeeCCC-----------------------------CCc---------cccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 218 FSAADD-----------------------------GGY---------SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 218 ~~~~~~-----------------------------~~~---------~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
+-+... +.| -.+|++++|+|-...|+||+.||.|-+||+.+.
T Consensus 185 ~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 185 LVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred EecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence 000000 112 257899999999999999999999999999998
Q ss_pred eEEEEEeCCCcceeEEEe
Q 023642 260 KLSLRILAHTVNIALWIT 277 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v~~ 277 (279)
+.+..+......|.++..
T Consensus 265 Krl~q~~~~~~SI~slsf 282 (323)
T KOG1036|consen 265 KRLKQLAKYETSISSLSF 282 (323)
T ss_pred hhhhhccCCCCceEEEEe
Confidence 888888776666666554
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-13 Score=109.48 Aligned_cols=178 Identities=17% Similarity=0.214 Sum_probs=141.1
Q ss_pred CccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeC--CCcEEEEEcCCCeEEeeeeec
Q 023642 91 GNYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDILA 165 (279)
Q Consensus 91 ~~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~ 165 (279)
..|+.+|.+ .+.|+.+.+++........++..+.-.+..+.|......++.++. |.+|+.-++.+.+.++- +
T Consensus 20 l~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRY---F 96 (311)
T KOG1446|consen 20 LDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRY---F 96 (311)
T ss_pred EEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEE---c
Confidence 456677665 467889999999988888889999889999999877777776665 88999999999988775 6
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecccccc------ceeEEeeCCC----------------
Q 023642 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH------DGLDFSAADD---------------- 223 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------~~~~~~~~~~---------------- 223 (279)
.+|...|.+++.+|-+..+++++.|++|++||++..+++.+....... +++.|.....
T Consensus 97 ~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgP 176 (311)
T KOG1446|consen 97 PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGP 176 (311)
T ss_pred CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCC
Confidence 899999999999999999999999999999999977765444432221 1222211111
Q ss_pred -------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcc
Q 023642 224 -------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVN 271 (279)
Q Consensus 224 -------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~ 271 (279)
.+-......+.|||||++++.+...+.+++.|.-+|....++.++...
T Consensus 177 F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~ 231 (311)
T KOG1446|consen 177 FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNA 231 (311)
T ss_pred ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCC
Confidence 123456789999999999999999999999999999999999887654
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.1e-15 Score=123.75 Aligned_cols=138 Identities=20% Similarity=0.282 Sum_probs=108.5
Q ss_pred CCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCC--------------eEEeeee-----------eccCCCcceEEEEE
Q 023642 124 TSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERG--------------WKIQKDI-----------LAKSLRWTVTDTSL 177 (279)
Q Consensus 124 ~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~--------------~~~~~~~-----------~~~~~~~~v~~~~~ 177 (279)
...|+++.|-| +...|+.+-.+|.+.+||..-. ....... ...--++.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 47899999999 5567778888999999976310 0000000 00011346889999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 178 sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
+|||++||+.+.||.+||||..+.+.....+. +-+...|++|||||+++++|++|.-|.||.+.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS----------------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKS----------------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHh----------------hccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 99999999999999999999988765443321 33578999999999999999999999999999
Q ss_pred CCeEEEEEeCCCcceeEEEe
Q 023642 258 ANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 258 ~~~~~~~~~~h~~~v~~v~~ 277 (279)
.++.+..-+||+.+|+.|+.
T Consensus 363 erRVVARGqGHkSWVs~VaF 382 (636)
T KOG2394|consen 363 ERRVVARGQGHKSWVSVVAF 382 (636)
T ss_pred cceEEEeccccccceeeEee
Confidence 99999999999999998874
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-13 Score=106.95 Aligned_cols=119 Identities=23% Similarity=0.278 Sum_probs=90.0
Q ss_pred CCCCeEEEEECCCCCEEEEE--eCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC---CCeEEEEE
Q 023642 123 TTSRAYVSQFSADGSLFVAG--FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVD 197 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i~i~d 197 (279)
..++|.+++|+|+|+.|+.. ..+..|.+||++ ++.+.. +. ...+..+.|+|+|++|+.++. .|.+.+||
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~---~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFS---FG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEe---ec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence 34579999999999987544 456799999997 434333 22 346788999999999998874 46799999
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC------CCeEEEEECCCCeEEEEEe
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~------d~~i~vwd~~~~~~~~~~~ 266 (279)
+++.+..... ....+..++|+|||++|+++.. |..++||+.. |+.+.+..
T Consensus 132 ~~~~~~i~~~------------------~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 132 VRKKKKISTF------------------EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCCEEeecc------------------ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9976654322 1125789999999999998763 7789999985 77666543
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.1e-15 Score=113.00 Aligned_cols=156 Identities=13% Similarity=0.166 Sum_probs=132.8
Q ss_pred CCceeeCCCCCeEEEEECC---CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCe
Q 023642 116 GPWPVDQTTSRAYVSQFSA---DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (279)
Q Consensus 116 ~~~~l~~h~~~V~~~~~sp---d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 192 (279)
.+.+-.+|+.+|-.++||| +|=+|++++.|+.-.+-+=++|..+.. +.+|.+.|++..+..+....++++.|-+
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigt---feghkgavw~~~l~~na~~aasaaadft 82 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGT---FEGHKGAVWSATLNKNATRAASAAADFT 82 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEe---eeccCcceeeeecCchhhhhhhhcccch
Confidence 4556789999999999997 888999999999999988888877765 5799999999999999889999999999
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCC--------------------------CCccccEEEEEEecCCCEEEEec
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADD--------------------------GGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
.++||..+|..........+...+.|+.+.. .+|++.|..+.|-...+.+++++
T Consensus 83 akvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa 162 (334)
T KOG0278|consen 83 AKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA 162 (334)
T ss_pred hhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec
Confidence 9999999998876666666666677766654 67999999999988888888889
Q ss_pred CCCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 247 SDDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 247 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
.|++|++||.+++..++++.- ..+|+++
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~-~s~VtSl 190 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEF-NSPVTSL 190 (334)
T ss_pred cCCceEEEEeccCcEEEEEec-CCCCcce
Confidence 999999999999999999973 3445543
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-14 Score=116.23 Aligned_cols=162 Identities=10% Similarity=0.081 Sum_probs=120.5
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeee-----------------
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD----------------- 162 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~----------------- 162 (279)
++.|+.+.+|++........+..|.+.|..++++. ..+++++.|++|+.|-++.. .++.+
T Consensus 85 Gs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~tilg~s~~~gIdh~~~~~~ 161 (433)
T KOG0268|consen 85 GSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHTILGKSVYLGIDHHRKNSV 161 (433)
T ss_pred cccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-cceeeecccccccccccccccc
Confidence 56799999999999888899999999999999987 67889999999999974421 11000
Q ss_pred ---------ee----------ccCCCcceEEEEECCCCC-EEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCC
Q 023642 163 ---------IL----------AKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (279)
Q Consensus 163 ---------~~----------~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (279)
+. +.-....|.++.|+|-.. .|++|+.|+.|.|||++.+..............+.|.+..
T Consensus 162 FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea 241 (433)
T KOG0268|consen 162 FATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA 241 (433)
T ss_pred ccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccc
Confidence 00 000112478888888654 5778889999999999998874443333333344444421
Q ss_pred C--------------------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEE
Q 023642 223 D--------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 264 (279)
Q Consensus 223 ~--------------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~ 264 (279)
. .+|.+.|.++.|||.|+.+++||.|.+|+||.+..+.....
T Consensus 242 fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi 309 (433)
T KOG0268|consen 242 FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI 309 (433)
T ss_pred cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhh
Confidence 1 56888999999999999999999999999999987754433
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-14 Score=113.69 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=113.2
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC---CC--eEEeeeeeccCCCcceEE
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE---RG--WKIQKDILAKSLRWTVTD 174 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~---~~--~~~~~~~~~~~~~~~v~~ 174 (279)
.+.|..+.+|++. .+....+......-+..++||+|+++++++.--.|++|.+- .| +.+.+...+.+|...|..
T Consensus 205 as~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~ 283 (420)
T KOG2096|consen 205 ASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLA 283 (420)
T ss_pred ecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheee
Confidence 4567788888876 44444566666777788999999999999998999999873 23 344555678899999999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCC----Cceeeeec--------cccccceeEEeeCCC-------------------
Q 023642 175 TSLSPDQRHLVYASMSPIVHIVDVGS----GTMESLAN--------VTEIHDGLDFSAADD------------------- 223 (279)
Q Consensus 175 ~~~sp~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~--------~~~~~~~~~~~~~~~------------------- 223 (279)
++|+|+.+.+++.+.||+++|||+.- ++-..+.+ ....+..+.+++.++
T Consensus 284 ~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~ 363 (420)
T KOG2096|consen 284 AAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGK 363 (420)
T ss_pred eeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCc
Confidence 99999999999999999999999742 11111111 111122233444333
Q ss_pred ------CCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 224 ------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 224 ------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
+-|...|.+++|+++|++++|++ |+.++++.
T Consensus 364 ~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 364 DYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred cchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 45888999999999999999987 67788776
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-14 Score=116.63 Aligned_cols=138 Identities=17% Similarity=0.143 Sum_probs=109.6
Q ss_pred cccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeec-cCCCcceEEEEECCC
Q 023642 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KSLRWTVTDTSLSPD 180 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~sp~ 180 (279)
.|+.+..|+.........+..+. .|+++..++++..|.+.+.|.++.+.|+++......+... .......+.+.|||+
T Consensus 320 ~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 320 FDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred cccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence 36677777776666666666665 9999999999999999999999999999987544432111 111224788999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEE
Q 023642 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (279)
Q Consensus 181 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vw 254 (279)
+.|+++|+.||.|+||++.++++......... ...|++++|+|.|..|++++.++.+.+|
T Consensus 399 ~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s--------------~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFTGKLEKVLSLSTS--------------NAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CceeeeccCCCcEEEEEccCceEEEEeccCCC--------------CcceEEEEEcCCCchhhcccCCcceEec
Confidence 99999999999999999999998655433211 1269999999999999999999999999
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-14 Score=119.52 Aligned_cols=131 Identities=19% Similarity=0.235 Sum_probs=101.5
Q ss_pred EEEECCCCC-EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeee
Q 023642 129 VSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESL 206 (279)
Q Consensus 129 ~~~~spd~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~ 206 (279)
-+.++|..+ +|.+++.+|.|.+||+....+... ....|..+...++|+|.. .+|++.+.|+.|.+||.+.......
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~--~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~ 246 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH--ASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDR 246 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccCCCcccc--hhhhccCCcCcceecCCccceEEEecccceEEEeecccccccce
Confidence 444555433 345567788888998876554332 346888999999999965 5678999999999999986554222
Q ss_pred eccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC-CeEEEEEeCCCcceeEEEee
Q 023642 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~-~~~~~~~~~h~~~v~~v~~~ 278 (279)
.. +..+...++|+++|.+|+.|...|.|..||++. ..++..+..|...|+++.++
T Consensus 247 l~-----------------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq 302 (673)
T KOG4378|consen 247 LT-----------------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQ 302 (673)
T ss_pred ee-----------------ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEee
Confidence 11 223789999999999999999999999999985 56899999999999998764
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-14 Score=117.78 Aligned_cols=161 Identities=16% Similarity=0.126 Sum_probs=118.4
Q ss_pred ceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEE
Q 023642 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (279)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 184 (279)
.+.+|.+.+........-..++|.+++-+|+|.+|+.|+..+.|++|.+.+|..+.. ...|=..|+++.|+-||.+|
T Consensus 62 ~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v---~~aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV---LSAHYQSITCLKFSDDGSHI 138 (476)
T ss_pred cccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHH---HHhhccceeEEEEeCCCcEE
Confidence 344555554433332334578899999999999999999999999999999977654 46787889999999999999
Q ss_pred EEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC--CCEEEEecCCCeEEEEECCCCeEE
Q 023642 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKLS 262 (279)
Q Consensus 185 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~t~s~d~~i~vwd~~~~~~~ 262 (279)
++++.||.|.+|++..---.. ... ....-..|.. |.-.|+++...+. ..+|+|+|.|.++++||+..|..+
T Consensus 139 iTgskDg~V~vW~l~~lv~a~-~~~-~~~p~~~f~~-----HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLVSAD-NDH-SVKPLHIFSD-----HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred EecCCCccEEEEEEEeecccc-cCC-Cccceeeecc-----CcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence 999999999999875421100 000 1111123333 5569999988764 458999999999999999999988
Q ss_pred EEEeCCCcceeEEE
Q 023642 263 LRILAHTVNIALWI 276 (279)
Q Consensus 263 ~~~~~h~~~v~~v~ 276 (279)
.++.- ...+.+++
T Consensus 212 lti~f-p~si~av~ 224 (476)
T KOG0646|consen 212 LTITF-PSSIKAVA 224 (476)
T ss_pred EEEec-CCcceeEE
Confidence 88863 34445443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-14 Score=115.66 Aligned_cols=147 Identities=22% Similarity=0.275 Sum_probs=112.3
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeee
Q 023642 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (279)
Q Consensus 128 ~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 207 (279)
.+++|+++|..+++|+.||++|+|+..+...+.. ...|...|.++.|+|||++|++-+.| ..+||++.++......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~---e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE---EIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhh---hHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 7899999999999999999999999776654433 46788889999999999999999999 8999999988332111
Q ss_pred c---cccccceeEEeeCCC------------------------CC-----------ccccEEEEEEecCCCEEEEecCCC
Q 023642 208 N---VTEIHDGLDFSAADD------------------------GG-----------YSFGIFSLKFSTDGRELVAGSSDD 249 (279)
Q Consensus 208 ~---~~~~~~~~~~~~~~~------------------------~~-----------~~~~v~~~~~sp~g~~l~t~s~d~ 249 (279)
. .......+.|..+.. .+ -...|++++.++||++++.|+.||
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 1 000011112222110 00 123689999999999999999999
Q ss_pred eEEEEECCCCeEEEEEe-CCCcceeEEEee
Q 023642 250 CIYVYDLEANKLSLRIL-AHTVNIALWITC 278 (279)
Q Consensus 250 ~i~vwd~~~~~~~~~~~-~h~~~v~~v~~~ 278 (279)
.|-|++..+-+.++.++ .|...|+.|..|
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~ 333 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFS 333 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEc
Confidence 99999999988888886 798888887654
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-13 Score=119.09 Aligned_cols=173 Identities=14% Similarity=0.178 Sum_probs=136.9
Q ss_pred CCCee--eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcce
Q 023642 95 GRGRF--SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV 172 (279)
Q Consensus 95 ~~~~~--~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 172 (279)
..+++ .+.++.+.-|++........+....+.|.+++.+|.+..++.|+.||.+..++...+...... .+...++.|
T Consensus 79 e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r-~l~rq~sRv 157 (691)
T KOG2048|consen 79 EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR-SLMRQKSRV 157 (691)
T ss_pred cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe-ecccccceE
Confidence 34554 345778889999998888888889999999999999999999999998877887777554443 334446789
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEE
Q 023642 173 TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (279)
Q Consensus 173 ~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~ 252 (279)
.+++|+|++..|++|+.||.|++||+..+....+....- .+ .. ++-.-.|+++.|-.++ .+++|...|+|.
T Consensus 158 Lslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~--d~--l~----k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~ 228 (691)
T KOG2048|consen 158 LSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQL--DR--LS----KREPTIVWSVLFLRDS-TIASGDSAGTVT 228 (691)
T ss_pred EEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecc--cc--cc----cCCceEEEEEEEeecC-cEEEecCCceEE
Confidence 999999999999999999999999999988754222110 00 00 0122368888888555 678999999999
Q ss_pred EEECCCCeEEEEEeCCCcceeEEEe
Q 023642 253 VYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 253 vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+||...+..++.+..|...|.++..
T Consensus 229 FWd~~~gTLiqS~~~h~adVl~Lav 253 (691)
T KOG2048|consen 229 FWDSIFGTLIQSHSCHDADVLALAV 253 (691)
T ss_pred EEcccCcchhhhhhhhhcceeEEEE
Confidence 9999999999999999999999875
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=119.70 Aligned_cols=138 Identities=13% Similarity=0.206 Sum_probs=112.0
Q ss_pred eCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC-CCEEEEEeCCCeEEEEEC
Q 023642 121 DQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 121 ~~h~~~V~~~~~spd-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~i~d~ 198 (279)
.+|++.|.+++|+.. .+.||+|+.|.+|++||+.++++... ...|.+.|.+++|+|. ..+|++|+.|+++.+.|.
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s---~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSS---ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCccee---hhhcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence 369999999999984 56789999999999999999988665 3478889999999995 567999999999999999
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC-EEEEecCCCeEEEEECCC-CeEEEEEeCCCcceeEEE
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEA-NKLSLRILAHTVNIALWI 276 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~t~s~d~~i~vwd~~~-~~~~~~~~~h~~~v~~v~ 276 (279)
+....... .|.- .+.|-.++|.|... .++++..||+|+-+|+|. ++++.++.+|.++|.++.
T Consensus 317 R~~~~s~~----------~wk~------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~ 380 (463)
T KOG0270|consen 317 RDPSNSGK----------EWKF------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLS 380 (463)
T ss_pred cCccccCc----------eEEe------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEE
Confidence 95222111 1111 13789999998755 566778899999999997 589999999999999875
Q ss_pred e
Q 023642 277 T 277 (279)
Q Consensus 277 ~ 277 (279)
.
T Consensus 381 ~ 381 (463)
T KOG0270|consen 381 V 381 (463)
T ss_pred e
Confidence 4
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=117.26 Aligned_cols=146 Identities=17% Similarity=0.188 Sum_probs=118.8
Q ss_pred eccccceEeeeeecCCCCc---------eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC--------C-----Ce
Q 023642 100 SAADCCHMLSRYLPVNGPW---------PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE--------R-----GW 157 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~---------~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~--------~-----~~ 157 (279)
.+.|..+++|.+....... .|..|...|+++.|+|+|.+|++|+.+|.|.+|-.. + .+
T Consensus 32 ~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke 111 (434)
T KOG1009|consen 32 AGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKE 111 (434)
T ss_pred ccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCcc
Confidence 5678889999887654332 368999999999999999999999999999999765 2 21
Q ss_pred EEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec
Q 023642 158 KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST 237 (279)
Q Consensus 158 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 237 (279)
.......+++|...|..++|+||+.++++++.|..+++||+..|....... .|...+..++|.|
T Consensus 112 ~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~----------------dh~~yvqgvawDp 175 (434)
T KOG1009|consen 112 KWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD----------------DHEHYVQGVAWDP 175 (434)
T ss_pred ceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc----------------ccccccceeecch
Confidence 122223467899999999999999999999999999999999998754332 2666899999999
Q ss_pred CCCEEEEecCCCeEEEEECCCCeE
Q 023642 238 DGRELVAGSSDDCIYVYDLEANKL 261 (279)
Q Consensus 238 ~g~~l~t~s~d~~i~vwd~~~~~~ 261 (279)
-++++++-+.|...+++.+...+.
T Consensus 176 l~qyv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 176 LNQYVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred hhhhhhhhccCcccceeeeeeeee
Confidence 999999999998788887765443
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-14 Score=124.28 Aligned_cols=171 Identities=15% Similarity=0.198 Sum_probs=133.9
Q ss_pred ccCCCCeee-ccc--cceEeeeeecCCCCceeeCCCCCeEEEEECC---CCCEEEEEeCCCcEEEEEcCCCeEEeeeeec
Q 023642 92 NYSGRGRFS-AAD--CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA---DGSLFVAGFQASQIRIYDVERGWKIQKDILA 165 (279)
Q Consensus 92 ~~~~~~~~~-~~d--~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp---d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 165 (279)
.++++|+.. +.| +.+.++++........++.|...|.|+.+|. ..++||+++.|.-|+|||+...-.+.. .+
T Consensus 466 ~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~q--tl 543 (1080)
T KOG1408|consen 466 AVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQ--TL 543 (1080)
T ss_pred EECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhh--hh
Confidence 467777763 333 3577888887777788999999999999995 457899999999999999875311110 11
Q ss_pred cCCCc-------------------------------------------------ceEEEEECCCCCEEEEEeCCCeEEEE
Q 023642 166 KSLRW-------------------------------------------------TVTDTSLSPDQRHLVYASMSPIVHIV 196 (279)
Q Consensus 166 ~~~~~-------------------------------------------------~v~~~~~sp~~~~l~~~~~d~~i~i~ 196 (279)
.+|.. .+.+++..|..+++++++.|+.|+||
T Consensus 544 d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif 623 (1080)
T KOG1408|consen 544 DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIF 623 (1080)
T ss_pred cccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEE
Confidence 22222 45667777777789999999999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
|+.+++.....+ +..+ |.+....+...|.|.|+++.+.|+++.++|.-+|+|+.++.||...|+.+.
T Consensus 624 ~i~sgKq~k~FK-----------gs~~--~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~k 690 (1080)
T KOG1408|consen 624 DIESGKQVKSFK-----------GSRD--HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVK 690 (1080)
T ss_pred eccccceeeeec-----------cccc--CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeee
Confidence 999998865443 2222 556888999999999999999999999999999999999999999998876
Q ss_pred e
Q 023642 277 T 277 (279)
Q Consensus 277 ~ 277 (279)
.
T Consensus 691 F 691 (1080)
T KOG1408|consen 691 F 691 (1080)
T ss_pred e
Confidence 4
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-13 Score=121.93 Aligned_cols=140 Identities=19% Similarity=0.138 Sum_probs=109.4
Q ss_pred cccceEeeeeecCCCCcee---eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeee----------------
Q 023642 102 ADCCHMLSRYLPVNGPWPV---DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD---------------- 162 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~~~~l---~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~---------------- 162 (279)
..+.+-+.++...-....+ ..|..+|++++...-++.+++++.+|-+++||......+...
T Consensus 468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~ 547 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD 547 (910)
T ss_pred cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence 3444444554443333334 589999999999999999999999999999999865322111
Q ss_pred ----------------------eeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEee
Q 023642 163 ----------------------ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (279)
Q Consensus 163 ----------------------~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 220 (279)
..+.+|...|++++|||||++|++++.|++|++||+.++.++-.....
T Consensus 548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---------- 617 (910)
T KOG1539|consen 548 LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---------- 617 (910)
T ss_pred hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC----------
Confidence 023489999999999999999999999999999999999986544322
Q ss_pred CCCCCccccEEEEEEecCCCEEEEecCC-CeEEEEECCC
Q 023642 221 ADDGGYSFGIFSLKFSTDGRELVAGSSD-DCIYVYDLEA 258 (279)
Q Consensus 221 ~~~~~~~~~v~~~~~sp~g~~l~t~s~d-~~i~vwd~~~ 258 (279)
.++.++.|+|+|.+|||...| .-|++|-=++
T Consensus 618 -------~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 618 -------SPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred -------CcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 278999999999999999988 5799997543
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.1e-14 Score=119.51 Aligned_cols=171 Identities=15% Similarity=0.103 Sum_probs=126.5
Q ss_pred eccccceEeeeee---cCC-----CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-------eEEeeeee
Q 023642 100 SAADCCHMLSRYL---PVN-----GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-------WKIQKDIL 164 (279)
Q Consensus 100 ~~~d~~~~~~~~~---~~~-----~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~ 164 (279)
.+.++.+.+|++. +.. ..+++.+|.++|.|+++.+++..+++|+.||+|+.|++... ........
T Consensus 312 ~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~ 391 (577)
T KOG0642|consen 312 ASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGT 391 (577)
T ss_pred eccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccc
Confidence 5678888889982 221 22568999999999999999999999999999999965421 11112224
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecccc--ccceeEEeeCC--------------------
Q 023642 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTE--IHDGLDFSAAD-------------------- 222 (279)
Q Consensus 165 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~-------------------- 222 (279)
+.+|.+.|+.+++|+....|++++.||++++|+.............. .+..+++....
T Consensus 392 l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev 471 (577)
T KOG0642|consen 392 LLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEV 471 (577)
T ss_pred eeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhh
Confidence 57999999999999999999999999999999987655411111000 00011111110
Q ss_pred --------------------------------------C-----------------CCccccEEEEEEecCCCEEEEecC
Q 023642 223 --------------------------------------D-----------------GGYSFGIFSLKFSTDGRELVAGSS 247 (279)
Q Consensus 223 --------------------------------------~-----------------~~~~~~v~~~~~sp~g~~l~t~s~ 247 (279)
+ ..|...++++++.|+|.+|++++.
T Consensus 472 ~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~ 551 (577)
T KOG0642|consen 472 VSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSH 551 (577)
T ss_pred hhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecC
Confidence 0 336778899999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEeCCCc
Q 023642 248 DDCIYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 248 d~~i~vwd~~~~~~~~~~~~h~~ 270 (279)
|+.+++|.+....+++....|..
T Consensus 552 d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 552 DGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred Cceeehhhccchheeeccccccc
Confidence 99999999998888888877754
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.6e-14 Score=121.06 Aligned_cols=183 Identities=21% Similarity=0.278 Sum_probs=135.6
Q ss_pred hccccCCccccccccCCCCCcccchhhhhccccCcc-----CCCC----eeeccccceEeeeeec-CCCCceeeCC----
Q 023642 58 TKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNY-----SGRG----RFSAADCCHMLSRYLP-VNGPWPVDQT---- 123 (279)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~d~~~~~~~~~~-~~~~~~l~~h---- 123 (279)
+-|++...+..+.++...+.+.+ .+.+.+|...+ ...| .++...+..+..+... ......+..|
T Consensus 517 kLLASasrdRlIHV~Dv~rny~l--~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~ 594 (1080)
T KOG1408|consen 517 KLLASASRDRLIHVYDVKRNYDL--VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTL 594 (1080)
T ss_pred HhhhhccCCceEEEEecccccch--hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccc
Confidence 33566677777777766555443 45566655432 2222 2232223333333333 2223333333
Q ss_pred -CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 124 -TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 124 -~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
...++.+++.|..++++++++|..|+|||+..++..+.+.-.++|++....+...|.|.||++...|+++.++|..+|+
T Consensus 595 ~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE 674 (1080)
T KOG1408|consen 595 SKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE 674 (1080)
T ss_pred ccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccch
Confidence 3568999999999999999999999999999998887776677888889999999999999999999999999999999
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
+.... .||...|+.+.|.+|.++|++.+.|++|+||.+..
T Consensus 675 cvA~m----------------~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 675 CVAQM----------------TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhhhh----------------cCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 85321 14777999999999999999999999999999864
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-14 Score=118.18 Aligned_cols=161 Identities=18% Similarity=0.149 Sum_probs=116.4
Q ss_pred ceeeCCCCCeEEEEECCCC--CEEEEEeCCCcEEEEEcCCC-eEEeeeeeccCCCcceEEEEECCC-CCEEEEEeCCCeE
Q 023642 118 WPVDQTTSRAYVSQFSADG--SLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIV 193 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~--~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i 193 (279)
....-+..+|++++|+|.. +++++|..-|+|-+||+.+. +....+..+..|.++|.++.|+|. -..+++.|.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 3456789999999999954 57889999999999999632 233345567899999999999994 4679999999999
Q ss_pred EEEECCCCceeeeeccccc---cceeEEeeCCC--------------------------CCccccEEEEEEecCCC-EEE
Q 023642 194 HIVDVGSGTMESLANVTEI---HDGLDFSAADD--------------------------GGYSFGIFSLKFSTDGR-ELV 243 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~--------------------------~~~~~~v~~~~~sp~g~-~l~ 243 (279)
++-|++++....+...... ...+.|..... .-|...|.+++++|..+ +|+
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 9999987654322222110 01111111111 23677999999999765 588
Q ss_pred EecCCCeEEEEECCCC--e--EEEEEeCCCcceeEEEee
Q 023642 244 AGSSDDCIYVYDLEAN--K--LSLRILAHTVNIALWITC 278 (279)
Q Consensus 244 t~s~d~~i~vwd~~~~--~--~~~~~~~h~~~v~~v~~~ 278 (279)
|+|.|++++|||++.- + ++.....|...|+++..+
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS 378 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS 378 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence 9999999999999852 2 344455699999887653
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=124.78 Aligned_cols=121 Identities=17% Similarity=0.238 Sum_probs=99.4
Q ss_pred CCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEE----eeeeeccCCCcceEEEEECCC-CCEEEEEeCCCeEEEEE
Q 023642 124 TSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVD 197 (279)
Q Consensus 124 ~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~i~d 197 (279)
...|+.++|.| |...|+.++.||.|++|.+..+-.. .....+..|...|.++.|+|- ...|++++.|-+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 56799999999 8899999999999999998754111 011234678889999999994 56899999999999999
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCe
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~ 260 (279)
++++..... +. +|...|+.++|||||+.+++.+.|++|+||+-++++
T Consensus 707 l~~~~~~~~-----------l~-----gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 707 LANAKLYSR-----------LV-----GHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred hhhhhhhhe-----------ec-----cCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 999876432 22 367799999999999999999999999999987654
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-14 Score=113.56 Aligned_cols=94 Identities=10% Similarity=0.069 Sum_probs=81.8
Q ss_pred EeeeeecCCCCceeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEE
Q 023642 107 MLSRYLPVNGPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (279)
Q Consensus 107 ~~~~~~~~~~~~~l~~h~~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 185 (279)
.+.++...+-...+.+|...|+.+.+.|+. +++++++.|..||+|++.+..|+..+--..+|.+.|.++.|+++|.+|+
T Consensus 118 rVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ 197 (385)
T KOG1034|consen 118 RVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIA 197 (385)
T ss_pred EEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeee
Confidence 334444444445589999999999999954 7889999999999999999999888777789999999999999999999
Q ss_pred EEeCCCeEEEEECCC
Q 023642 186 YASMSPIVHIVDVGS 200 (279)
Q Consensus 186 ~~~~d~~i~i~d~~~ 200 (279)
+++.|.++++|++..
T Consensus 198 ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 198 SCGMDHSLKLWRLNV 212 (385)
T ss_pred ccCCcceEEEEecCh
Confidence 999999999999974
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-14 Score=111.31 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=110.1
Q ss_pred ccccceEeeeeecCC----------CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC--CeEEeeeeeccCC
Q 023642 101 AADCCHMLSRYLPVN----------GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER--GWKIQKDILAKSL 168 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~----------~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~ 168 (279)
-.++.+..|++.... .......|.++|.++.+.+.-..=++|+.+.++..|.++. +.+.........+
T Consensus 172 yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn 251 (323)
T KOG0322|consen 172 YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN 251 (323)
T ss_pred ccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecC
Confidence 356677888776542 1223578999999999998777778899999999998864 3332222222233
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC
Q 023642 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d 248 (279)
. .|..+..-||++.+|+++.|+.||+|..++.....+.+. |+..|++++|+|+...+|.++.|
T Consensus 252 p-Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky----------------Hsagvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 252 P-GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY----------------HSAGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred C-CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh----------------hhcceeEEEeCCCCchhhhccCC
Confidence 3 488999999999999999999999999999887665544 77899999999999999999999
Q ss_pred CeEEEEEC
Q 023642 249 DCIYVYDL 256 (279)
Q Consensus 249 ~~i~vwd~ 256 (279)
.+|.+|++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 99999986
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-13 Score=108.35 Aligned_cols=122 Identities=17% Similarity=0.201 Sum_probs=102.1
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
..+.|+++.|+|.++.|+.++.||.+++||........+ -.|..++.+++|.+ ...+++|+.||.|+++|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~----~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK----FKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh----eecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence 468899999999999999999999999999987743332 46778999999987 5688999999999999999988
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
...+.. |...|.++.+++-...+++||.|++|++||.+...++.++.
T Consensus 87 ~~~igt-----------------h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d 133 (323)
T KOG1036|consen 87 EDQIGT-----------------HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD 133 (323)
T ss_pred ceeecc-----------------CCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc
Confidence 644322 66699999999988889999999999999999655544444
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.7e-14 Score=117.52 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=123.4
Q ss_pred ccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC
Q 023642 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 180 (279)
..|+.+.+|++........+.||++.+.|+.+++||..|.+|+-|++||-||++.+..+.. ....+.|+++..+|.
T Consensus 528 csdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq----hdF~SQIfSLg~cP~ 603 (705)
T KOG0639|consen 528 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ----HDFSSQIFSLGYCPT 603 (705)
T ss_pred ccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh----hhhhhhheecccCCC
Confidence 4688999999999988899999999999999999999999999999999999999866543 455678999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC------------------------CCccccEEEEEEe
Q 023642 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD------------------------GGYSFGIFSLKFS 236 (279)
Q Consensus 181 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~v~~~~~s 236 (279)
+.+++.|..++.+.+......+...+.....+.-.+.|...+. ..-.+.|.++..|
T Consensus 604 ~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS 683 (705)
T KOG0639|consen 604 GDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDIS 683 (705)
T ss_pred ccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeec
Confidence 9999999999999998887665543333333333333333322 2235678999999
Q ss_pred cCCCEEEEecCCCeEEEEEC
Q 023642 237 TDGRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 237 p~g~~l~t~s~d~~i~vwd~ 256 (279)
.|.++++||+.|....||.+
T Consensus 684 ~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 684 FDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCceEEEecCCCcceEEEEE
Confidence 99999999999988888765
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=110.61 Aligned_cols=121 Identities=19% Similarity=0.295 Sum_probs=103.8
Q ss_pred CCCCCeEEEEECCC----CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCC-CEEEEEeCCCeEEEE
Q 023642 122 QTTSRAYVSQFSAD----GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIV 196 (279)
Q Consensus 122 ~h~~~V~~~~~spd----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~ 196 (279)
.|....+.++|+-| ..++|.|+.-|.|+|.|+.++++... ..+|.+.|..+.++|+. ++++++|.|..|++|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~---~~ghG~sINeik~~p~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN---YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLW 163 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc---eeccCccchhhhcCCCCCcEEEEecCCceEEEE
Confidence 47888899999864 34788899999999999999877654 57999999999999965 678999999999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
++++..+..+..-. .||...|.++.|+++|.++++++.|.+|.+|++..
T Consensus 164 nI~~~~Cv~VfGG~-------------egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 164 NIQTDVCVAVFGGV-------------EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred eccCCeEEEEeccc-------------ccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 99999886644321 24888999999999999999999999999999984
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-12 Score=112.61 Aligned_cols=148 Identities=12% Similarity=0.112 Sum_probs=117.2
Q ss_pred eccccceEeeeeecCCCC-ceeeCC-CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE
Q 023642 100 SAADCCHMLSRYLPVNGP-WPVDQT-TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~-~~l~~h-~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (279)
+-.++.+-+|++.+.--. ..+.++ ...|.+++|++ +..|++.+.+|.|.-||+.+++.... .....+.|++++.
T Consensus 43 sRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~---~d~~gg~IWsiai 118 (691)
T KOG2048|consen 43 SRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYN---IDSNGGAIWSIAI 118 (691)
T ss_pred eccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEE---ecCCCcceeEEEe
Confidence 556778888887764322 235565 56799999994 55677888889999999999876554 3455678999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 178 sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
+|.+..++.|+.||.+..++...+.......... ..+.|.+++|+|++..+++|+.|+.|++||+.
T Consensus 119 ~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r--------------q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 119 NPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR--------------QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred CCccceEEeecCCceEEEEecCCceEEEEeeccc--------------ccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence 9999999999999988888888777654333222 33589999999999999999999999999999
Q ss_pred CCeEEEEE
Q 023642 258 ANKLSLRI 265 (279)
Q Consensus 258 ~~~~~~~~ 265 (279)
++..+...
T Consensus 185 ~~~t~~~~ 192 (691)
T KOG2048|consen 185 SGQTLHII 192 (691)
T ss_pred CCceEEEe
Confidence 99887743
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.7e-14 Score=126.24 Aligned_cols=232 Identities=11% Similarity=0.090 Sum_probs=164.8
Q ss_pred eccccccchhhhhhhhcccccccccccccccccCccccCCCCCchhHHHHHHHhhccccCCccccccccCCCCCcccchh
Q 023642 4 TASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTV 83 (279)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (279)
.+|++...++|-+..++.+.........+.. ..-.+.+.+..+++|..|-..++.+.+.....+.+
T Consensus 141 ~~~~~sl~s~~~~~~~h~~a~~i~~at~~~a-----------kPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Ii--- 206 (1113)
T KOG0644|consen 141 QVRGVSLRSIGGGFEIHHRAPSIGCATFSIA-----------KPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYII--- 206 (1113)
T ss_pred ccccceeccCCcchhhhhcCcccccceeeec-----------CcHHHHHHHHHHHHHHhhhhheeeeeeccccceEe---
Confidence 3678888888887777666433333333332 23348899999999999998887777766555543
Q ss_pred hhhccccCccCCCCeeeccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee
Q 023642 84 KMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI 163 (279)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 163 (279)
-.+.|+.+.+|...+........||.+.++.++.+.+..++++++.|..|++|-+.++.++..
T Consensus 207 ---------------tgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsv-- 269 (1113)
T KOG0644|consen 207 ---------------TGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSV-- 269 (1113)
T ss_pred ---------------ecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHH--
Confidence 145677778888655555566899999999999999999999999999999999999976654
Q ss_pred eccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecccc------------cccee---------------
Q 023642 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTE------------IHDGL--------------- 216 (279)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------------~~~~~--------------- 216 (279)
+.+|++.|++++|+|-. +.+.||++++||.+-........... ...+.
T Consensus 270 -LrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e 344 (1113)
T KOG0644|consen 270 -LRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHE 344 (1113)
T ss_pred -HhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccch
Confidence 68999999999999964 77899999999988111111100000 00000
Q ss_pred -----------EEeeC-----------------------------CCCCccccEEEEEEecCCCEE-EEecCCCeEEEEE
Q 023642 217 -----------DFSAA-----------------------------DDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYD 255 (279)
Q Consensus 217 -----------~~~~~-----------------------------~~~~~~~~v~~~~~sp~g~~l-~t~s~d~~i~vwd 255 (279)
.|... ...+|...++.+.++|-...+ .+++.||...|||
T Consensus 345 ~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 345 FEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred hhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence 00000 004577888999999976554 4789999999999
Q ss_pred CCCCeEEEEEe-CCCcc
Q 023642 256 LEANKLSLRIL-AHTVN 271 (279)
Q Consensus 256 ~~~~~~~~~~~-~h~~~ 271 (279)
+..|.+++.+. +|..-
T Consensus 425 i~eg~pik~y~~gh~kl 441 (1113)
T KOG0644|consen 425 IWEGIPIKHYFIGHGKL 441 (1113)
T ss_pred cccCCcceeeeccccee
Confidence 99998887665 55433
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-13 Score=107.62 Aligned_cols=178 Identities=14% Similarity=0.082 Sum_probs=128.5
Q ss_pred hhhccccCccCCCCee--eccccceEeeee-ecCCCCc--ee-----eCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEE
Q 023642 84 KMLAGREGNYSGRGRF--SAADCCHMLSRY-LPVNGPW--PV-----DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYD 152 (279)
Q Consensus 84 ~~~~~~~~~~~~~~~~--~~~d~~~~~~~~-~~~~~~~--~l-----~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd 152 (279)
....++...|+++|.. .+-.+++.+.+. .|..... .. .+..+.+.+++|+| +...++.|+.-.++-||.
T Consensus 157 e~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~ 236 (406)
T KOG2919|consen 157 EYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYN 236 (406)
T ss_pred hhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEe
Confidence 3455667788998874 555667777666 3332221 12 23478899999999 666899999999999998
Q ss_pred cCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC-CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEE
Q 023642 153 VERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF 231 (279)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 231 (279)
-..+.++.. +.+|.+.|+.+.|+++|+.|++|+. |..|..||++.-..... .. . .+.. .+..-.
T Consensus 237 ~~~~~pl~l---lggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~-~L-~--------rhv~--~TNQRI 301 (406)
T KOG2919|consen 237 DDGRRPLQL---LGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY-AL-E--------RHVG--DTNQRI 301 (406)
T ss_pred cCCCCceee---ecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh-hh-h--------hhcc--CccceE
Confidence 877766554 5699999999999999999999884 67899999987543211 11 0 0000 011112
Q ss_pred EEEEecCCCEEEEecCCCeEEEEECCC-CeEEEEEeCCCcceeEEE
Q 023642 232 SLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRILAHTVNIALWI 276 (279)
Q Consensus 232 ~~~~sp~g~~l~t~s~d~~i~vwd~~~-~~~~~~~~~h~~~v~~v~ 276 (279)
-....|++++|++|+.||.|++||+++ |..+..+..|...||.|.
T Consensus 302 ~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvs 347 (406)
T KOG2919|consen 302 LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVS 347 (406)
T ss_pred EEecCCCCceeeccCCCccEEEEecCCCCCccccccccccccccee
Confidence 234468999999999999999999998 788888888888888764
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-12 Score=106.32 Aligned_cols=134 Identities=17% Similarity=0.147 Sum_probs=97.4
Q ss_pred CCeEEEEECCCCCEEEEE-eCCCcEEEEEcCCCeEEeeeeecc--CC--CcceEEEEECCCCCEEEE-EeCCCeEEEEEC
Q 023642 125 SRAYVSQFSADGSLFVAG-FQASQIRIYDVERGWKIQKDILAK--SL--RWTVTDTSLSPDQRHLVY-ASMSPIVHIVDV 198 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~--~~--~~~v~~~~~sp~~~~l~~-~~~d~~i~i~d~ 198 (279)
.....++|+|++++|+.+ ..++.|++||+.+++.+....... .+ ......++|+|++++++. .+.++.+.+||+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence 456789999999988554 568999999999886654422110 01 112356889999998654 455678999999
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe-cCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~-s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
.+++...... +...+.+++|+|+|++|+++ +.++.|++||+.+++++.+++.... .+.++
T Consensus 237 ~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~~~ 297 (300)
T TIGR03866 237 KTYEVLDYLL-----------------VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRL-PWGVV 297 (300)
T ss_pred CCCcEEEEEE-----------------eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccc-cceeE
Confidence 8877643211 11268899999999999876 4689999999999999999986543 36665
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-13 Score=111.47 Aligned_cols=141 Identities=12% Similarity=0.104 Sum_probs=113.2
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
++.|.++++|++.......++..|.++|.+++|+| ....|++|+.|++|.+.|.+........ ....+.|..++|.
T Consensus 262 gsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~---wk~~g~VEkv~w~ 338 (463)
T KOG0270|consen 262 GSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE---WKFDGEVEKVAWD 338 (463)
T ss_pred cCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce---EEeccceEEEEec
Confidence 57899999999999999999999999999999999 5678899999999999999853222221 2344579999999
Q ss_pred CCCC-EEEEEeCCCeEEEEECCCCc-eeeeeccccccceeEEeeCCCCCccccEEEEEEecCC-CEEEEecCCCeEEEEE
Q 023642 179 PDQR-HLVYASMSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYD 255 (279)
Q Consensus 179 p~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~t~s~d~~i~vwd 255 (279)
|... .++++..||+++-+|+|... ..... .. |.+.|.++++++.- ..++|++.|+.|++|+
T Consensus 339 ~~se~~f~~~tddG~v~~~D~R~~~~~vwt~-----------~A-----Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 339 PHSENSFFVSTDDGTVYYFDIRNPGKPVWTL-----------KA-----HDDEISGLSVNIQTPGLLSTASTDKVVKLWK 402 (463)
T ss_pred CCCceeEEEecCCceEEeeecCCCCCceeEE-----------Ee-----ccCCcceEEecCCCCcceeeccccceEEEEe
Confidence 9665 56777899999999999864 32211 11 66799999999864 4678999999999999
Q ss_pred CCCC
Q 023642 256 LEAN 259 (279)
Q Consensus 256 ~~~~ 259 (279)
+..-
T Consensus 403 ~~~~ 406 (463)
T KOG0270|consen 403 FDVD 406 (463)
T ss_pred ecCC
Confidence 8643
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-12 Score=106.76 Aligned_cols=161 Identities=19% Similarity=0.176 Sum_probs=107.7
Q ss_pred ccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
+.++.+.+|+.........+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++..... ..+. .+..++|+|
T Consensus 8 ~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~---~~~~-~~~~~~~~~ 82 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL---PSGP-DPELFALHP 82 (300)
T ss_pred cCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec---cCCC-CccEEEECC
Confidence 456778888876555445555554 46789999999976 56778899999999988665432 2222 356789999
Q ss_pred CCCEEEEE-eCCCeEEEEECCCCceeeeeccccccceeEEeeCCC------------------CC-------ccccEEEE
Q 023642 180 DQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD------------------GG-------YSFGIFSL 233 (279)
Q Consensus 180 ~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~-------~~~~v~~~ 233 (279)
+++.++++ ..++.+++||+.+.+.............+.+.+++. .+ ....+..+
T Consensus 83 ~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (300)
T TIGR03866 83 NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFA 162 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEE
Confidence 99987654 568999999998866533222111111222222211 00 01234568
Q ss_pred EEecCCCEEEEe-cCCCeEEEEECCCCeEEEEEe
Q 023642 234 KFSTDGRELVAG-SSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 234 ~~sp~g~~l~t~-s~d~~i~vwd~~~~~~~~~~~ 266 (279)
+|+|++++|+.+ ..++.|++||+.+++.+..+.
T Consensus 163 ~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~ 196 (300)
T TIGR03866 163 EFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT 196 (300)
T ss_pred EECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee
Confidence 899999988544 468999999999998877765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8e-13 Score=118.06 Aligned_cols=157 Identities=15% Similarity=0.181 Sum_probs=126.3
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.+.++.++.+-......++...+-++.+++|+-+|+++|.|+.|-.|++-+..+..... .+++|.++|.++.|+|
T Consensus 72 ~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~---~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 72 GSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK---VLRGHDAPVLQLSYDP 148 (933)
T ss_pred eeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe---eecccCCceeeeeEcC
Confidence 4566677777766666666788889999999999999999999999999999998764433 3689999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
.+.+||+.+.||.|++||+.++.+......... ...+. .+..+..++|+|+|..|+..+.|++|++|+..+.
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k--~n~~~------~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDK--DNEFI------LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccCCc--ccccc------ccceeeeeeecCCCCeEEeeccCCeEEEEccCCc
Confidence 999999999999999999998876433221111 11111 1336788999999888888889999999999999
Q ss_pred eEEEEEeC
Q 023642 260 KLSLRILA 267 (279)
Q Consensus 260 ~~~~~~~~ 267 (279)
+....+..
T Consensus 221 e~~f~Lr~ 228 (933)
T KOG1274|consen 221 ELQFKLRD 228 (933)
T ss_pred eeheeecc
Confidence 98888864
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.8e-13 Score=111.23 Aligned_cols=134 Identities=18% Similarity=0.192 Sum_probs=101.8
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~ 201 (279)
...+.|..+.|+.|++.|++.+.+|.|.+||+.+..++++.....+. .-+.++.++++.+||+|+..|.|.|||..+.
T Consensus 342 KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v--~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 342 KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV--HGTSLCISLNGSYLATGSDSGIVNIYDGNSC 419 (514)
T ss_pred eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc--ceeeeeecCCCceEEeccCcceEEEeccchh
Confidence 34788999999999999999999999999999999888775432222 3467778899999999999999999997653
Q ss_pred ce----eeeecc---ccccceeEEeeCCC------------------------------CCccccEEEEEEecCCCEEEE
Q 023642 202 TM----ESLANV---TEIHDGLDFSAADD------------------------------GGYSFGIFSLKFSTDGRELVA 244 (279)
Q Consensus 202 ~~----~~~~~~---~~~~~~~~~~~~~~------------------------------~~~~~~v~~~~~sp~g~~l~t 244 (279)
.. .++... ......+.|.++.. ...-+.|+|++|||.|.+|+.
T Consensus 420 ~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAv 499 (514)
T KOG2055|consen 420 FASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAV 499 (514)
T ss_pred hccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEe
Confidence 32 222222 12223345555544 223467999999999999999
Q ss_pred ecCCCeEEEEECC
Q 023642 245 GSSDDCIYVYDLE 257 (279)
Q Consensus 245 ~s~d~~i~vwd~~ 257 (279)
|..+|.|.+|.+.
T Consensus 500 GNe~grv~l~kL~ 512 (514)
T KOG2055|consen 500 GNEAGRVHLFKLH 512 (514)
T ss_pred ecCCCceeeEeec
Confidence 9999999999874
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.6e-13 Score=106.02 Aligned_cols=159 Identities=16% Similarity=0.158 Sum_probs=117.9
Q ss_pred cccceEeeeeecCCC-Ccee-----eCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceE
Q 023642 102 ADCCHMLSRYLPVNG-PWPV-----DQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT 173 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~-~~~l-----~~h~~~V~~~~~sp--d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 173 (279)
.+..+.+|++..... ...+ .+|....++-+|+| |++.+++.+ |+++..||+++..+...+ ...|...|.
T Consensus 142 ~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI--~dAHgq~vr 218 (370)
T KOG1007|consen 142 DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSI--EDAHGQRVR 218 (370)
T ss_pred ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcch--hhhhcceee
Confidence 466777788766544 2111 34678889999999 888887765 589999999987665543 356777899
Q ss_pred EEEECCCCCE-EEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEecCCCeE
Q 023642 174 DTSLSPDQRH-LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCI 251 (279)
Q Consensus 174 ~~~~sp~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s~d~~i 251 (279)
++.|.|+.++ |++|+.||.|+|||.+..+..... . .+|+.+|+++.|+|. .+++++|+.|..|
T Consensus 219 dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e-l--------------~~HsHWvW~VRfn~~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 219 DLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE-L--------------PGHSHWVWAVRFNPEHDQLILSGGSDSAV 283 (370)
T ss_pred eccCCCCceEEEEEcCCCccEEEEeccCCCccccc-c--------------CCCceEEEEEEecCccceEEEecCCCcee
Confidence 9999998765 789999999999999986542111 1 137779999999997 5567799999999
Q ss_pred EEEECCC-----------------------------CeEEEEEeCCCcceeEEEee
Q 023642 252 YVYDLEA-----------------------------NKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 252 ~vwd~~~-----------------------------~~~~~~~~~h~~~v~~v~~~ 278 (279)
.+|...+ ...+.++..|.+.|+++.++
T Consensus 284 ~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS 339 (370)
T KOG1007|consen 284 NLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS 339 (370)
T ss_pred EEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence 9996522 11345777788888887654
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-12 Score=99.62 Aligned_cols=167 Identities=11% Similarity=0.044 Sum_probs=117.1
Q ss_pred eeccccceEeeeeecCCCC------c--eeeCC-----CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeec
Q 023642 99 FSAADCCHMLSRYLPVNGP------W--PVDQT-----TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA 165 (279)
Q Consensus 99 ~~~~d~~~~~~~~~~~~~~------~--~l~~h-----~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 165 (279)
+++.|+.+..|.+...... + ...-| --.|+++-..|..+-++.++.|+.++-||+++|+.... +
T Consensus 76 ls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~---~ 152 (325)
T KOG0649|consen 76 LSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE---Y 152 (325)
T ss_pred eeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE---E
Confidence 4566777777766543220 1 11122 24589999999888787788999999999999966554 6
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe
Q 023642 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~ 245 (279)
++|.++|.++.-......+++|+.||++|+||+++++............ .+.++ ...+|.+++.+ ..+|+.|
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~--~lRp~----~g~wigala~~--edWlvCG 224 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPN--LLRPD----WGKWIGALAVN--EDWLVCG 224 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChh--hcCcc----cCceeEEEecc--CceEEec
Confidence 8999999999997777889999999999999999999865443222111 12222 22478777765 5588776
Q ss_pred cCCCeEEEEECCCCeEEEEE--eCCCcceeEEEe
Q 023642 246 SSDDCIYVYDLEANKLSLRI--LAHTVNIALWIT 277 (279)
Q Consensus 246 s~d~~i~vwd~~~~~~~~~~--~~h~~~v~~v~~ 277 (279)
+ ...+.+|++++.++...| ++|...|.-+-.
T Consensus 225 g-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d 257 (325)
T KOG0649|consen 225 G-GPKLSLWHLRSSESTCVFPIPARVHLVDFVDD 257 (325)
T ss_pred C-CCceeEEeccCCCceEEEecccceeEeeeecc
Confidence 6 456999999987766665 466665554433
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=116.76 Aligned_cols=94 Identities=18% Similarity=0.167 Sum_probs=78.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
.+.|+..+|+|||++||+.++||.+||+|..+.+.+.. .+..-+...+++|+|||+||++|+.|.-|.||.+...++
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~---mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRV 366 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV---MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRV 366 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH---HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceE
Confidence 45889999999999999999999999999998654332 344456799999999999999999999999999998887
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEe
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 236 (279)
...- .||++||..|+|.
T Consensus 367 VARG----------------qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 367 VARG----------------QGHKSWVSVVAFD 383 (636)
T ss_pred EEec----------------cccccceeeEeec
Confidence 4321 2488899999887
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=125.51 Aligned_cols=178 Identities=17% Similarity=0.143 Sum_probs=130.9
Q ss_pred eccccceEeeeeecC--CCC----ceeeCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcce
Q 023642 100 SAADCCHMLSRYLPV--NGP----WPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV 172 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~--~~~----~~l~~h~~~V~~~~~spd-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 172 (279)
+..|+.+.+|+.... ... .....|++.|..+.|+|. +++||+|+.||.|.|||+...+..-... .....+.|
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI 164 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEI 164 (1049)
T ss_pred cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccc
Confidence 346888999987663 111 235789999999999995 4599999999999999998753322211 22345679
Q ss_pred EEEEECCC-CCEEEEEeCCCeEEEEECCCCcee-eeecccc-c-cceeEEeeCCC-------------------------
Q 023642 173 TDTSLSPD-QRHLVYASMSPIVHIVDVGSGTME-SLANVTE-I-HDGLDFSAADD------------------------- 223 (279)
Q Consensus 173 ~~~~~sp~-~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~-~-~~~~~~~~~~~------------------------- 223 (279)
.+++|... ...|++++.+|.+.|||++..+.+ .+..... . ...+.|.++..
T Consensus 165 ~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass 244 (1049)
T KOG0307|consen 165 KCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS 244 (1049)
T ss_pred eEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence 99999875 456889999999999999987542 1111111 0 01222222221
Q ss_pred -----CCccccEEEEEEecCC-CEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEee
Q 023642 224 -----GGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 224 -----~~~~~~v~~~~~sp~g-~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
.+|...|.++.|.+.+ .+|++++.|+.|..|+..+++.+..+....+++..|-+|
T Consensus 245 P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~ 305 (1049)
T KOG0307|consen 245 PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWC 305 (1049)
T ss_pred chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeec
Confidence 5799999999999876 788999999999999999999999999888888887766
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-13 Score=117.60 Aligned_cols=136 Identities=14% Similarity=0.206 Sum_probs=105.2
Q ss_pred CCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC--CCCEEEEEeCCCe
Q 023642 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPI 192 (279)
Q Consensus 115 ~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~ 192 (279)
.....+.||++.|++++|+.+|.+|++|+.|-++.|||....+.++.+ -.+|...|.++.|-| +.+.+++|..|..
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcce
Confidence 445568999999999999999999999999999999999876665543 468999999999999 4578999999999
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCC-CEEEEecCCCeEEEEECCC
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~t~s~d~~i~vwd~~~ 258 (279)
|++||+...+....-.... .....+.. |...|-.++-.|++ ..+.++++||+|+-+|++.
T Consensus 119 i~lfdl~~~~~~~~d~~~~-~~~~~~~c-----ht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGME-ETTRCWSC-----HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred EEEEecccccccccccCcc-chhhhhhh-----hhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 9999998532211000000 00001222 55688899999998 5677999999999999986
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-11 Score=98.64 Aligned_cols=177 Identities=13% Similarity=0.134 Sum_probs=123.1
Q ss_pred eccccceEeeeeecCCCCce----eeCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcC-----C-CeEEeeeeeccC
Q 023642 100 SAADCCHMLSRYLPVNGPWP----VDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVE-----R-GWKIQKDILAKS 167 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~----l~~h~~~V~~~~~sp--d~~~l~s~~~d~~i~iwd~~-----~-~~~~~~~~~~~~ 167 (279)
.+.|.++.+|++......+. -+.|.+.|..+.|.+ -|+.+|+++.|+++.||.=. . +....+...+..
T Consensus 31 CSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~D 110 (361)
T KOG2445|consen 31 CSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVD 110 (361)
T ss_pred ccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeec
Confidence 46899999999866666655 468999999999976 68999999999999999641 1 112223334566
Q ss_pred CCcceEEEEECC--CCCEEEEEeCCCeEEEEECCCCceeeeeccccc--------------cceeEEee-----------
Q 023642 168 LRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEI--------------HDGLDFSA----------- 220 (279)
Q Consensus 168 ~~~~v~~~~~sp--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------------~~~~~~~~----------- 220 (279)
.+..|+++.|.| -|-.+|+++.||++|||+....-.......... ...+.+++
T Consensus 111 srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvg 190 (361)
T KOG2445|consen 111 SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVG 190 (361)
T ss_pred CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEE
Confidence 777899999999 467899999999999998754221100000000 00001110
Q ss_pred ------------------CCC--------CCccccEEEEEEecC-CC---EEEEecCCCeEEEEECCC------------
Q 023642 221 ------------------ADD--------GGYSFGIFSLKFSTD-GR---ELVAGSSDDCIYVYDLEA------------ 258 (279)
Q Consensus 221 ------------------~~~--------~~~~~~v~~~~~sp~-g~---~l~t~s~d~~i~vwd~~~------------ 258 (279)
+++ .+|..+|++++|.|+ |+ .||+++.|| |+||+++.
T Consensus 191 s~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~ 269 (361)
T KOG2445|consen 191 SDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLA 269 (361)
T ss_pred cccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccC
Confidence 000 457899999999997 43 688999999 99999973
Q ss_pred --------CeEEEEEeCCCcceeEEEe
Q 023642 259 --------NKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 259 --------~~~~~~~~~h~~~v~~v~~ 277 (279)
=+.+..+.+|...|+.+-+
T Consensus 270 ~~~~~~l~v~~vs~~~~H~~~VWrv~w 296 (361)
T KOG2445|consen 270 PDLMTDLPVEKVSELDDHNGEVWRVRW 296 (361)
T ss_pred CCCccccceEEeeeccCCCCceEEEEE
Confidence 1245667789888887653
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=102.72 Aligned_cols=160 Identities=12% Similarity=0.102 Sum_probs=116.7
Q ss_pred eeccccceEeeeeecCCCCce---------eeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC
Q 023642 99 FSAADCCHMLSRYLPVNGPWP---------VDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL 168 (279)
Q Consensus 99 ~~~~d~~~~~~~~~~~~~~~~---------l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (279)
+...++.+++|+.-+.+.... -..+..++++..|+. |.+++.+++-|-+..|||+.++........+-.|
T Consensus 116 LATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH 195 (364)
T KOG0290|consen 116 LATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH 195 (364)
T ss_pred hhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec
Confidence 356678889998875333211 245678999999997 8889999999999999999987431112235689
Q ss_pred CcceEEEEECCCCC-EEEEEeCCCeEEEEECCCCceeeeeccccc-cc---ee-----------EEeeCCC---------
Q 023642 169 RWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEI-HD---GL-----------DFSAADD--------- 223 (279)
Q Consensus 169 ~~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~---~~-----------~~~~~~~--------- 223 (279)
...|.+++|...+. .+|+.+.||.+|+||++..+.-.+...... .. .+ +|..+..
T Consensus 196 DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~ 275 (364)
T KOG0290|consen 196 DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV 275 (364)
T ss_pred CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence 99999999998664 688999999999999987654322221111 00 01 1111111
Q ss_pred --------CCccccEEEEEEecC-CCEEEEecCCCeEEEEECCC
Q 023642 224 --------GGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 224 --------~~~~~~v~~~~~sp~-g~~l~t~s~d~~i~vwd~~~ 258 (279)
.+|.+.|+.++|.|. ...+.|++.|..+-+||+.+
T Consensus 276 P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 276 PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 679999999999996 66899999999999999964
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-13 Score=105.98 Aligned_cols=138 Identities=12% Similarity=0.183 Sum_probs=107.1
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee---eccCCCcceEEEEECC--CCCEEEEEeCCCeEEEE
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI---LAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIV 196 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~i~i~ 196 (279)
.+-+.|.|+.|.|++..+++-. |..|.+|++..+..+.... ...+++...++-+|+| ||+.+++. .|+++..|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEE
Confidence 4557999999999999998876 7899999998775522111 1123455788889999 77888775 46899999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC-EEEEecCCCeEEEEECCC-CeEEEEEeCCCcceeE
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEA-NKLSLRILAHTVNIAL 274 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~t~s~d~~i~vwd~~~-~~~~~~~~~h~~~v~~ 274 (279)
|+++-.+..... +.|.+.|..+.|+|+.+ +|+|++.|+.|++||.+. ..+++.+.+|..+|++
T Consensus 199 D~RT~~~~~sI~---------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 199 DLRTMKKNNSIE---------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA 263 (370)
T ss_pred Eccchhhhcchh---------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence 999766532221 12666899999999966 578999999999999985 6699999999999998
Q ss_pred EE
Q 023642 275 WI 276 (279)
Q Consensus 275 v~ 276 (279)
|=
T Consensus 264 VR 265 (370)
T KOG1007|consen 264 VR 265 (370)
T ss_pred EE
Confidence 73
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.5e-12 Score=103.54 Aligned_cols=140 Identities=15% Similarity=0.177 Sum_probs=107.5
Q ss_pred ccceEeeeeecCCCCceee---CCCCCeEEEEECCCCCEEEEE--eCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE
Q 023642 103 DCCHMLSRYLPVNGPWPVD---QTTSRAYVSQFSADGSLFVAG--FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~l~---~h~~~V~~~~~spd~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (279)
...+.++++......+++. .+...+.++++++.+.+++.- ...|.|.+||+.+-+.+.. ...|++++-+++|
T Consensus 105 ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~---I~aH~~~lAalaf 181 (391)
T KOG2110|consen 105 EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNT---INAHKGPLAALAF 181 (391)
T ss_pred cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeE---EEecCCceeEEEE
Confidence 3346667776666555543 455667777777777888764 2358999999988766554 4699999999999
Q ss_pred CCCCCEEEEEeCCCe-EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEEC
Q 023642 178 SPDQRHLVYASMSPI-VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 178 sp~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~ 256 (279)
+|+|.+||+++..|+ ||+|.+.+|+...-. .++. ....|++++|+|++++|++.|..++|++|.+
T Consensus 182 s~~G~llATASeKGTVIRVf~v~~G~kl~eF--RRG~------------~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 182 SPDGTLLATASEKGTVIRVFSVPEGQKLYEF--RRGT------------YPVSIYSLSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred CCCCCEEEEeccCceEEEEEEcCCccEeeee--eCCc------------eeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence 999999999999886 899999999874332 2221 1237999999999999999999999999999
Q ss_pred CCC
Q 023642 257 EAN 259 (279)
Q Consensus 257 ~~~ 259 (279)
...
T Consensus 248 ~~~ 250 (391)
T KOG2110|consen 248 EKV 250 (391)
T ss_pred ccc
Confidence 753
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.8e-13 Score=115.82 Aligned_cols=140 Identities=19% Similarity=0.199 Sum_probs=101.4
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC-EEEEEeCCCeEEEEEC
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDV 198 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~ 198 (279)
...|...|..+.|.|...+|++++.|.++++||+.++...... .+.+|.+.|.+++|+|+.. .+++|+.||.|.|||+
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-eecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 4679999999999997778999999999999999998776553 4679999999999999654 6889999999999999
Q ss_pred CCCceeeeec----ccccccee-------EEeeCCCCCccccEEE---EEEecCCCEEEEecC-CCeEEEEECCCCe
Q 023642 199 GSGTMESLAN----VTEIHDGL-------DFSAADDGGYSFGIFS---LKFSTDGRELVAGSS-DDCIYVYDLEANK 260 (279)
Q Consensus 199 ~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~v~~---~~~sp~g~~l~t~s~-d~~i~vwd~~~~~ 260 (279)
+-........ ....+.+. .-.-.....+...|.+ +.+..|...||+++. |+.|+|||+++..
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence 8644211111 11111110 0000001234445555 556678889999887 9999999998744
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.5e-13 Score=114.56 Aligned_cols=137 Identities=7% Similarity=0.130 Sum_probs=107.5
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-----CeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeE
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-----GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i 193 (279)
++..|.+.|..++|.|....|++++.|+.|++|++.. ...+..+..+++|.++|.++++.+.+.++++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 5788999999999999999999999999999999932 23445556789999999999999999999999999999
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeE
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~ 261 (279)
+.|++.. ..-..-......-.-.+. ||...|+.+++|+....|++++.||+++.|+.....+
T Consensus 369 ~~w~~p~-n~dp~ds~dp~vl~~~l~-----Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 369 RCWNLPP-NQDPDDSYDPSVLSGTLL-----GHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred eeeccCC-CCCcccccCcchhcccee-----ccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence 9998762 211000000000011233 4666999999999999999999999999999876555
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-12 Score=112.21 Aligned_cols=141 Identities=15% Similarity=0.158 Sum_probs=105.4
Q ss_pred ceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEe-eeeeccCCCcceEEEEECCCCCE
Q 023642 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ-KDILAKSLRWTVTDTSLSPDQRH 183 (279)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~ 183 (279)
.+++|+.-.-.....+.+|.-.|+.++||||+++|++.+.|.++.+|......... .+.....|..-|+++.|+|++.+
T Consensus 553 vI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 553 VIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY 632 (764)
T ss_pred EEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccce
Confidence 34455544444455699999999999999999999999999999999986543221 11224688888999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-----CCEEEEecCCCeEEEEECC
Q 023642 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-----GRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 184 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----g~~l~t~s~d~~i~vwd~~ 257 (279)
++++|.|++|++|......-..+...... .+...|+.++|.|- +..++.|-+.|.|.+|...
T Consensus 633 FaTaSRDK~VkVW~~~~~~d~~i~~~a~~------------~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDLRDKYISRFACL------------KFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred eEEecCCceEEEEeccCchhhhhhhhchh------------ccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 99999999999999887732222221110 14458899998772 2256778889999999965
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-12 Score=106.75 Aligned_cols=151 Identities=19% Similarity=0.157 Sum_probs=118.5
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee-----
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI----- 163 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~----- 163 (279)
.++.+|.. .+.|+++++|++-..........|...|.++.|+|||++|++-+.| ..+||+..++.++....
T Consensus 151 af~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~ 229 (398)
T KOG0771|consen 151 AFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKD 229 (398)
T ss_pred EEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccc
Confidence 45555443 5678999999987777777788999999999999999999999999 99999998872211100
Q ss_pred ---------------------ecc-------------------------CCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 164 ---------------------LAK-------------------------SLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 164 ---------------------~~~-------------------------~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
... .....|++++.++||++++.|+.||.|.|++
T Consensus 230 ~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~ 309 (398)
T KOG0771|consen 230 EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYD 309 (398)
T ss_pred hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEE
Confidence 000 0022589999999999999999999999999
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
..+-+.....+. .|..-|+.+.|+||.+++++-+.|..+.|..+.-
T Consensus 310 ~~~lq~~~~vk~---------------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 310 AKSLQRLQYVKE---------------AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eceeeeeEeehh---------------hheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 988776443321 2777999999999999999988888888887754
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-12 Score=111.01 Aligned_cols=164 Identities=14% Similarity=0.133 Sum_probs=110.7
Q ss_pred CCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeecc---------------------------
Q 023642 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK--------------------------- 166 (279)
Q Consensus 114 ~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------------------------- 166 (279)
......+.+|++.|.++...|.|.+|++|+.||+|+||.+.+|.|+.......
T Consensus 390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 33445679999999999999999999999999999999999998887642111
Q ss_pred -------------------------------------------------CCCcceEEEEECCCCCEEEEEeCC---CeEE
Q 023642 167 -------------------------------------------------SLRWTVTDTSLSPDQRHLVYASMS---PIVH 194 (279)
Q Consensus 167 -------------------------------------------------~~~~~v~~~~~sp~~~~l~~~~~d---~~i~ 194 (279)
.|...|.++.||..|.||++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 222345556666666666554432 3455
Q ss_pred EEECCCCceeeee-ccccccceeEEeeCCC------------------------CCccccEEEEEEecCCCEEEEecCCC
Q 023642 195 IVDVGSGTMESLA-NVTEIHDGLDFSAADD------------------------GGYSFGIFSLKFSTDGRELVAGSSDD 249 (279)
Q Consensus 195 i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~------------------------~~~~~~v~~~~~sp~g~~l~t~s~d~ 249 (279)
|+++.....+... +.........|.+... .....+|..++.+|.|.-|+.|+.|+
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 6655543332211 1111111222332221 22356788899999999999999999
Q ss_pred eEEEEECCC-CeEEEEEeCCCcceeEEEe
Q 023642 250 CIYVYDLEA-NKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 250 ~i~vwd~~~-~~~~~~~~~h~~~v~~v~~ 277 (279)
.+..+|+.- .++.+++..|...+++|++
T Consensus 630 k~~WfDldlsskPyk~lr~H~~avr~Va~ 658 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAF 658 (733)
T ss_pred eeEEEEcccCcchhHHhhhhhhhhhhhhh
Confidence 999999874 4688888888888887753
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-11 Score=99.36 Aligned_cols=166 Identities=18% Similarity=0.170 Sum_probs=114.0
Q ss_pred ccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCc-EEEEEcCCCeEEeeeeeccCCCcceEEEEECCCC
Q 023642 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQ-IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 181 (279)
-+.+++|+.......-.+..|.+.+.+++|+|+|.+||+++..|+ |||+.+..|+.+..+....- -..|.+++|+||+
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-PVSIYSLSFSPDS 230 (391)
T ss_pred CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-eeEEEEEEECCCC
Confidence 456888999888888889999999999999999999999999986 68999999987776432222 3468999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeec--cccccce-e-----EEeeCC-------C-------CCccccEEEEEEe--c
Q 023642 182 RHLVYASMSPIVHIVDVGSGTMESLAN--VTEIHDG-L-----DFSAAD-------D-------GGYSFGIFSLKFS--T 237 (279)
Q Consensus 182 ~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~-~-----~~~~~~-------~-------~~~~~~v~~~~~s--p 237 (279)
++|++.+..++|++|.+.......... ......+ . .+.+.. . -...+.-..+.+. +
T Consensus 231 ~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~ 310 (391)
T KOG2110|consen 231 QFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQ 310 (391)
T ss_pred CeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccC
Confidence 999999999999999887543211110 0000000 0 000000 0 0001111233444 4
Q ss_pred CCCEEEEecCCCeEEEEECCC--CeEEEEEeCCC
Q 023642 238 DGRELVAGSSDDCIYVYDLEA--NKLSLRILAHT 269 (279)
Q Consensus 238 ~g~~l~t~s~d~~i~vwd~~~--~~~~~~~~~h~ 269 (279)
..+++..++.||.++.|.+.. |.....+..|.
T Consensus 311 ~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~ 344 (391)
T KOG2110|consen 311 KIPRVLVASYDGHLYSYRLPPKEGGECALIKRHF 344 (391)
T ss_pred CCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeec
Confidence 678888999999999998753 55555666554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.1e-13 Score=114.63 Aligned_cols=165 Identities=15% Similarity=0.137 Sum_probs=128.3
Q ss_pred ccCccCCCCe--eeccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeecc
Q 023642 89 REGNYSGRGR--FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK 166 (279)
Q Consensus 89 ~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 166 (279)
+...|.|+|. +.+++..+.+++...+....++++|.+.|++++|+.||.++++|+.|+.|.+|+..-.-.++ .
T Consensus 16 ~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk-----Y 90 (1081)
T KOG1538|consen 16 NDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK-----Y 90 (1081)
T ss_pred heeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee-----e
Confidence 3445666654 35778888888888888889999999999999999999999999999999999865322222 4
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
.|...|.++.|.|-...|++++.. ..-+|........... -...+.+++|..||++|+-|-
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~k------------------ss~R~~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHK------------------SSSRIICCSWTNDGQYLALGM 151 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhh------------------hheeEEEeeecCCCcEEEEec
Confidence 788899999999999999999865 4667766544332111 123789999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEe---CCCcceeEEEee
Q 023642 247 SDDCIYVYDLEANKLSLRIL---AHTVNIALWITC 278 (279)
Q Consensus 247 ~d~~i~vwd~~~~~~~~~~~---~h~~~v~~v~~~ 278 (279)
.+|+|.+-+- ++++-..++ |...+|+++..|
T Consensus 152 ~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~ 185 (1081)
T KOG1538|consen 152 FNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWN 185 (1081)
T ss_pred cCceEEeecC-CCCcceEEeCCCCCCCCceEEEec
Confidence 9999999875 455544444 577788888765
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=105.55 Aligned_cols=140 Identities=17% Similarity=0.167 Sum_probs=108.6
Q ss_pred eccccceEeeeeecC-------CCCceeeCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcc
Q 023642 100 SAADCCHMLSRYLPV-------NGPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT 171 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~-------~~~~~l~~h~~~V~~~~~spd-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 171 (279)
.+.|+++.+|.+-.. .....|.+|...|--++|+|. .+.|++++.|++|.+|++.+|+.+.. ..|..-
T Consensus 100 gSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~----l~hpd~ 175 (472)
T KOG0303|consen 100 GSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALIT----LDHPDM 175 (472)
T ss_pred CCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeee----cCCCCe
Confidence 467889999976432 223458999999999999994 56789999999999999999976554 249999
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec---CC
Q 023642 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SD 248 (279)
Q Consensus 172 v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s---~d 248 (279)
|.++.|+-||.+|++.+.|+.|+|||.++++...... .+.+ ..-..+.|-.+|.++.||- .+
T Consensus 176 i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~---~heG------------~k~~Raifl~~g~i~tTGfsr~se 240 (472)
T KOG0303|consen 176 VYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV---AHEG------------AKPARAIFLASGKIFTTGFSRMSE 240 (472)
T ss_pred EEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc---cccC------------CCcceeEEeccCceeeeccccccc
Confidence 9999999999999999999999999999998754321 1111 1345667878888655553 46
Q ss_pred CeEEEEECCC
Q 023642 249 DCIYVYDLEA 258 (279)
Q Consensus 249 ~~i~vwd~~~ 258 (279)
..+-+||-..
T Consensus 241 Rq~aLwdp~n 250 (472)
T KOG0303|consen 241 RQIALWDPNN 250 (472)
T ss_pred cceeccCccc
Confidence 7899998654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-12 Score=110.27 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=110.3
Q ss_pred eccccceEeeeeecCCCCc--eeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEE-----------------
Q 023642 100 SAADCCHMLSRYLPVNGPW--PVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI----------------- 159 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~--~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~----------------- 159 (279)
.+.|.+...|++....... .+.||...|.+++|.| |...|++|+.||.|.|||++....-
T Consensus 118 asGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p 197 (720)
T KOG0321|consen 118 ASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP 197 (720)
T ss_pred ccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence 5678889999988765443 4899999999999999 5567899999999999998643100
Q ss_pred ------e-eeeeccCCCcceEE---EEECCCCCEEEEEeC-CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccc
Q 023642 160 ------Q-KDILAKSLRWTVTD---TSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF 228 (279)
Q Consensus 160 ------~-~~~~~~~~~~~v~~---~~~sp~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (279)
. .......+...|.+ +.+..|...||+++. |+.|++||++......-...... .. +.-+.. -..
T Consensus 198 tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~-~~--~~t~sk--rs~ 272 (720)
T KOG0321|consen 198 TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS-DK--YPTHSK--RSV 272 (720)
T ss_pred CCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc-cC--ccCccc--cee
Confidence 0 00001123334555 556678899999887 99999999998665322211111 11 111100 123
Q ss_pred cEEEEEEecCCCEEEEecCCCeEEEEECCCC--eEEEEEeCC
Q 023642 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLRILAH 268 (279)
Q Consensus 229 ~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~--~~~~~~~~h 268 (279)
.+.++.....|.+|+..+.|+.|++||+.+- .+++.+.|+
T Consensus 273 G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~ 314 (720)
T KOG0321|consen 273 GQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGK 314 (720)
T ss_pred eeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCc
Confidence 5778888888999888888999999999862 244444444
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-11 Score=102.36 Aligned_cols=143 Identities=16% Similarity=0.264 Sum_probs=107.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC-EEEEEeCCCeEEEEECCCCc
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~ 202 (279)
.+.|+++.|+|....|++++.|++++||-++..... .+....-...+|..+.|+|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 578999999999999999999999999998754211 2112223345899999999999 78999999999999999888
Q ss_pred eeeeecccccc----ceeEEeeCCC-------CC-----------------ccccEEEEEEecCCCEEEEecCCCeEEEE
Q 023642 203 MESLANVTEIH----DGLDFSAADD-------GG-----------------YSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (279)
Q Consensus 203 ~~~~~~~~~~~----~~~~~~~~~~-------~~-----------------~~~~v~~~~~sp~g~~l~t~s~d~~i~vw 254 (279)
...+....... ..+..++.+. .| -.+.|..++|+.|++.|+.++.+|.|++|
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 75444322211 1111122221 11 23568899999999999999999999999
Q ss_pred ECCCCeEEEEEeC
Q 023642 255 DLEANKLSLRILA 267 (279)
Q Consensus 255 d~~~~~~~~~~~~ 267 (279)
|++...++.++..
T Consensus 372 nl~~~~~~~rf~D 384 (514)
T KOG2055|consen 372 NLRQNSCLHRFVD 384 (514)
T ss_pred ecCCcceEEEEee
Confidence 9999999999874
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.4e-12 Score=104.54 Aligned_cols=151 Identities=11% Similarity=0.071 Sum_probs=110.4
Q ss_pred CceeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEe-eeeeccCCCcceEEEEECCCCCEEEEEeCCCeEE
Q 023642 117 PWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQ-KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 194 (279)
.+.+.-|..+|..++++|-. .+|++++.|++++|||++.-.... .+.....|...|.++.|||++-.|++.+.|..|+
T Consensus 315 ~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IR 394 (498)
T KOG4328|consen 315 YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIR 394 (498)
T ss_pred chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceE
Confidence 34577899999999999954 567999999999999998643222 1344568899999999999888899999999999
Q ss_pred EEECC----CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCc
Q 023642 195 IVDVG----SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 195 i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~ 270 (279)
|||.. ......... .....+..-......|.|+..+++.|-.-..|-|+|-..++.+..+.+...
T Consensus 395 v~dss~~sa~~~p~~~I~-----------Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~ 463 (498)
T KOG4328|consen 395 VFDSSCISAKDEPLGTIP-----------HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPES 463 (498)
T ss_pred EeecccccccCCccceee-----------ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccc
Confidence 99985 111111111 000000011345678999999999999988999999999988888765544
Q ss_pred -ceeEEEee
Q 023642 271 -NIALWITC 278 (279)
Q Consensus 271 -~v~~v~~~ 278 (279)
.|.+++.|
T Consensus 464 ~tI~~vn~~ 472 (498)
T KOG4328|consen 464 STIPSVNEF 472 (498)
T ss_pred cccccceee
Confidence 66666543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-11 Score=97.30 Aligned_cols=133 Identities=12% Similarity=0.077 Sum_probs=96.9
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-EEeeeeeccCCCcceEEEEECC--CCCEEEEEeCCCeEEEE
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIV 196 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~i~i~ 196 (279)
..+|.+-|.++.|.+-|+.+|+++.|++|+|||..... .......-+.|.+.|..+.|.+ -|+.+|+++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 46799999999999999999999999999999965431 2222234578999999999965 48899999999999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC--CCEEEEecCCCeEEEEECCCC
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~t~s~d~~i~vwd~~~~ 259 (279)
.-.......... .-....++.. ..+.|++++|.|. |-.|++++.||+++||+...-
T Consensus 89 EE~~~~~~~~~~--~Wv~~ttl~D-----srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 89 EEQEKSEEAHGR--RWVRRTTLVD-----SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred eecccccccccc--eeEEEEEeec-----CCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence 753211100000 0000001111 3458999999996 778999999999999988653
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-11 Score=101.86 Aligned_cols=135 Identities=14% Similarity=0.179 Sum_probs=105.3
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~ 196 (279)
..+..+|.+....++.+|+..+++++++|+.+++|+ ..+.... +....++.+++|+|.| .+|.|...|...+.
T Consensus 361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt----~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~ 433 (626)
T KOG2106|consen 361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT----KIIEDPAECADFHPSG-VVAVGTATGRWFVL 433 (626)
T ss_pred eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE----EEecCceeEeeccCcc-eEEEeeccceEEEE
Confidence 345689999999999999999999999999999999 3323222 3345589999999999 99999999999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC-CeEEEEEeC-CCcceeE
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRILA-HTVNIAL 274 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~-~~~~~~~~~-h~~~v~~ 274 (279)
|.++.....+..- ..++++++|+|+|.+||.|+.|+.|++|-+.. |....+..- |.++|..
T Consensus 434 d~e~~~lv~~~~d-----------------~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ith 496 (626)
T KOG2106|consen 434 DTETQDLVTIHTD-----------------NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITH 496 (626)
T ss_pred ecccceeEEEEec-----------------CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEE
Confidence 9999665433221 23899999999999999999999999999875 334433332 2255554
Q ss_pred E
Q 023642 275 W 275 (279)
Q Consensus 275 v 275 (279)
+
T Consensus 497 L 497 (626)
T KOG2106|consen 497 L 497 (626)
T ss_pred e
Confidence 4
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-12 Score=111.96 Aligned_cols=138 Identities=18% Similarity=0.192 Sum_probs=110.4
Q ss_pred ceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCe--EEe-eeeeccCCCcceEEEEECCCCCEEEEEeCCCeE
Q 023642 118 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGW--KIQ-KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~--~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i 193 (279)
-.+.+|.+.|+.+.|+| +..+|++++.|..|+||.+..+. .+. ..+.+.+..-.|.++.|+|...-|+..+..|.+
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v 152 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSV 152 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceE
Confidence 34789999999999999 66788999999999999998652 221 112233344578999999987777777778999
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC-CeEEEEEeCCCcc
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRILAHTVN 271 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~-~~~~~~~~~h~~~ 271 (279)
+|||+.+++.... .. +|...|-+..|+.||..|++++.|..|+|||-+. ++++++.++|.+.
T Consensus 153 ~i~D~stqk~~~e-----------l~-----~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~ 215 (1012)
T KOG1445|consen 153 YITDISTQKTAVE-----------LS-----GHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGM 215 (1012)
T ss_pred EEEEcccCceeec-----------cc-----CCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccc
Confidence 9999999876432 12 2666899999999999999999999999999875 6789999998753
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.5e-11 Score=100.88 Aligned_cols=155 Identities=22% Similarity=0.288 Sum_probs=120.1
Q ss_pred ccceEeeeeec-CCCCceeeCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC
Q 023642 103 DCCHMLSRYLP-VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (279)
Q Consensus 103 d~~~~~~~~~~-~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 180 (279)
+..+.+|+... ......+..|...|..++|+|++..+++++. |+.+++|++..+..+.. ...|...|.+++|+|+
T Consensus 133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~ 209 (466)
T COG2319 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST---LAGHTDPVSSLAFSPD 209 (466)
T ss_pred CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe---eccCCCceEEEEEcCC
Confidence 66788888766 5556678999999999999999999988886 99999999998655443 3458889999999999
Q ss_pred CC-EEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 181 QR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 181 ~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
+. .+++++.|+.+++||...+..... . +. +|.... -..|+|++.++++++.|+.+++|+++..
T Consensus 210 ~~~~~~~~~~d~~i~~wd~~~~~~~~~--~--------~~-----~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 210 GGLLIASGSSDGTIRLWDLSTGKLLRS--T--------LS-----GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSS 273 (466)
T ss_pred cceEEEEecCCCcEEEEECCCCcEEee--e--------cC-----CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence 98 555569999999998886555331 0 11 133343 2389999988999999999999999876
Q ss_pred eE-EEEEeCCCcceeEEE
Q 023642 260 KL-SLRILAHTVNIALWI 276 (279)
Q Consensus 260 ~~-~~~~~~h~~~v~~v~ 276 (279)
.. +..+.+|...|.++.
T Consensus 274 ~~~~~~~~~~~~~v~~~~ 291 (466)
T COG2319 274 SSLLRTLSGHSSSVLSVA 291 (466)
T ss_pred CcEEEEEecCCccEEEEE
Confidence 64 555567878877764
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-11 Score=92.81 Aligned_cols=129 Identities=12% Similarity=0.184 Sum_probs=96.8
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE------EeeeeeccCCC-----cceEEEEECCCCCEEEEEe
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK------IQKDILAKSLR-----WTVTDTSLSPDQRHLVYAS 188 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~~-----~~v~~~~~sp~~~~l~~~~ 188 (279)
..+|.++|+.++|. ..+|++|+. |.|+-|..+.... +..... .-|. -.|.++-+.|..+-++.++
T Consensus 58 eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~-P~~~~~~evPeINam~ldP~enSi~~Ag 133 (325)
T KOG0649|consen 58 EQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKI-PMQVDAVEVPEINAMWLDPSENSILFAG 133 (325)
T ss_pred ccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcC-ccccCcccCCccceeEeccCCCcEEEec
Confidence 47899999999998 356666665 9999997654211 111110 0111 1488999999888888888
Q ss_pred CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 189 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
.|+.++-||+++|+.... |.+ |+..|.++.--.....+++|++||++++||.+++++++.+...
T Consensus 134 GD~~~y~~dlE~G~i~r~-----------~rG-----HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y 197 (325)
T KOG0649|consen 134 GDGVIYQVDLEDGRIQRE-----------YRG-----HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPY 197 (325)
T ss_pred CCeEEEEEEecCCEEEEE-----------EcC-----CcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccc
Confidence 999999999999997543 333 6668999987555556789999999999999999999998753
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.8e-12 Score=103.15 Aligned_cols=126 Identities=14% Similarity=0.152 Sum_probs=105.1
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC------eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCe
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 192 (279)
-+.+|.+.|+++.||.++++|++|+.|..+++|.++.- +++. .....|...|.+++|.-..+.+++|..+++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~--~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG--VMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce--eccCccccceEEEEEccCCeeEecCCCcce
Confidence 36899999999999999999999999999999998642 2222 123567789999999999999999999999
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCe
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~ 260 (279)
|.+-|+++.+.+.+.... ...+.|+.+..+|..+.|++.+.++.|.+||.+...
T Consensus 129 VI~HDiEt~qsi~V~~~~--------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANEN--------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred eEeeecccceeeeeeccc--------------CcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 999999998865443221 144689999999999999999999999999998644
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-10 Score=98.13 Aligned_cols=187 Identities=18% Similarity=0.173 Sum_probs=118.0
Q ss_pred cccccccCCCCCcccchhhhhccccCccCCCCeeeccccceEeeeeecCCCCcee--eCCCCCeEEEEECCCCCEEEEEe
Q 023642 66 EHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPV--DQTTSRAYVSQFSADGSLFVAGF 143 (279)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l--~~h~~~V~~~~~spd~~~l~s~~ 143 (279)
+..+..|. ..++..+..-.-..+...|.|.| ..+.....-.|-+.+.+....+ .....++++++|+|+|.+||.|+
T Consensus 389 dk~v~lW~-~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs 466 (626)
T KOG2106|consen 389 DKHVRLWN-DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS 466 (626)
T ss_pred cceEEEcc-CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec
Confidence 34444454 33333333223333444566666 3333333445666665554443 33378999999999999999999
Q ss_pred CCCcEEEEEcCCC-eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee-eeeccccccc--eeEEe
Q 023642 144 QASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME-SLANVTEIHD--GLDFS 219 (279)
Q Consensus 144 ~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~--~~~~~ 219 (279)
.|+.|.||.++.. ....+.-. .+..+|+.+.|++|+++|.+-+.|-.|..|........ .......... .+.|.
T Consensus 467 ~d~~iyiy~Vs~~g~~y~r~~k--~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~ 544 (626)
T KOG2106|consen 467 HDNHIYIYRVSANGRKYSRVGK--CSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFE 544 (626)
T ss_pred CCCeEEEEEECCCCcEEEEeee--ecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEE
Confidence 9999999998754 34433322 33379999999999999999999999999954433221 1111111100 11111
Q ss_pred --eCCC------------------------------------------CCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 220 --AADD------------------------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 220 --~~~~------------------------------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
+..+ .+|++.|.+++|..+...|++.+.|.+|..|+
T Consensus 545 v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 545 VFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred EecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence 1000 56888888888888777777777888888887
Q ss_pred C
Q 023642 256 L 256 (279)
Q Consensus 256 ~ 256 (279)
+
T Consensus 625 l 625 (626)
T KOG2106|consen 625 L 625 (626)
T ss_pred e
Confidence 6
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=112.03 Aligned_cols=139 Identities=13% Similarity=0.141 Sum_probs=115.6
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
++.-..+++|.+...+.+..+.+|.+.+.++.|+-||+++++.+.|.++|+|++++.+... ...-+|...|+++.|.|
T Consensus 151 gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~ 228 (967)
T KOG0974|consen 151 GSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLP 228 (967)
T ss_pred ccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEecc
Confidence 3456678899998666677799999999999999999999999999999999999986655 24568999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
. .|++++.|.++++|+....+.... ..| -...+..++..++...++|++.|+.+++||+..
T Consensus 229 n--~i~t~gedctcrvW~~~~~~l~~y------------~~h----~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 229 N--RIITVGEDCTCRVWGVNGTQLEVY------------DEH----SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred c--eeEEeccceEEEEEecccceehhh------------hhh----hhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 8 999999999999997665443311 111 113688999999999999999999999999865
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.7e-12 Score=115.66 Aligned_cols=156 Identities=16% Similarity=0.145 Sum_probs=110.1
Q ss_pred CCCCeEEEEECCCCCE----EEEEeCCCcEEEEEcCC---CeEEeeeeeccCCCcceEEEEECCCCC-EEEEEeCCCeEE
Q 023642 123 TTSRAYVSQFSADGSL----FVAGFQASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVH 194 (279)
Q Consensus 123 h~~~V~~~~~spd~~~----l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~ 194 (279)
-..+.+.++|.+.|.. |+.|..||.|.+||... +.....+.....|.+.|..+.|+|.+. +||+|+.||.|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 3577899999997765 88899999999999875 333333344678999999999999665 999999999999
Q ss_pred EEECCCCceeeeecccccccee---EEee--------CCC--------------------CCccccEEEEEEecCC-CEE
Q 023642 195 IVDVGSGTMESLANVTEIHDGL---DFSA--------ADD--------------------GGYSFGIFSLKFSTDG-REL 242 (279)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~---~~~~--------~~~--------------------~~~~~~v~~~~~sp~g-~~l 242 (279)
|||+.+.+.............+ .+.. ... .+....+..++|+|++ ..|
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence 9999874432111111011111 0000 000 1112457899999985 456
Q ss_pred EEecCCC---eEEEEECCC-CeEEEEEeCCCcceeEEEee
Q 023642 243 VAGSSDD---CIYVYDLEA-NKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 243 ~t~s~d~---~i~vwd~~~-~~~~~~~~~h~~~v~~v~~~ 278 (279)
++++.|. .|.+||+|- ..+++.+++|...|.++-+|
T Consensus 223 ~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc 262 (1049)
T KOG0307|consen 223 LVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWC 262 (1049)
T ss_pred eeecCCCCCceeEeecccccCCchhhhcccccceeeeccC
Confidence 6666544 799999985 56889999999999999887
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=98.29 Aligned_cols=142 Identities=12% Similarity=0.067 Sum_probs=106.3
Q ss_pred cccceEeeeeecCCCCceeeCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC-cceEEEEEC
Q 023642 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTVTDTSLS 178 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~s 178 (279)
..+.+.+++..+.+....++++...++.+.|.. .+..+.+++.||+|++||++.......+. ..++. .+..+++..
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~-~~~~~~~~f~~ld~n 126 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS-WTQQSGTPFICLDLN 126 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee-ccCCCCCcceEeecc
Confidence 455666666666666677899999999999987 56788999999999999999765544432 33443 456677776
Q ss_pred CCCCEEEEEe----CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEecCCCeEEE
Q 023642 179 PDQRHLVYAS----MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYV 253 (279)
Q Consensus 179 p~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s~d~~i~v 253 (279)
..++.+++|. .+-.+.+||++..+.. +... +. .|...|+++.|+|. -..|++||.||.|.+
T Consensus 127 ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-l~~~--------~e-----SH~DDVT~lrFHP~~pnlLlSGSvDGLvnl 192 (376)
T KOG1188|consen 127 CKKNIIACGTELTRSDASVVLWDVRSEQQL-LRQL--------NE-----SHNDDVTQLRFHPSDPNLLLSGSVDGLVNL 192 (376)
T ss_pred CcCCeEEeccccccCceEEEEEEeccccch-hhhh--------hh-----hccCcceeEEecCCCCCeEEeecccceEEe
Confidence 6778888876 4667999999987652 1111 11 26679999999996 568999999999999
Q ss_pred EECCC
Q 023642 254 YDLEA 258 (279)
Q Consensus 254 wd~~~ 258 (279)
||++.
T Consensus 193 fD~~~ 197 (376)
T KOG1188|consen 193 FDTKK 197 (376)
T ss_pred eecCC
Confidence 99964
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6e-13 Score=117.88 Aligned_cols=115 Identities=17% Similarity=0.304 Sum_probs=104.3
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~ 199 (279)
+.+|...|+|+.|...|.++++|+.|..++||...++.++.. +++|.+.|+.++.+.+..++++++.|..|++|.+.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs---~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS---CRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhcc---CCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 679999999999999999999999999999999999887765 78999999999999998999999999999999999
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
.+....+.. ||++.|++++|+|-- +.+.||++++||.+
T Consensus 263 ~~~pvsvLr----------------ghtgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 263 DGAPVSVLR----------------GHTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred CCchHHHHh----------------ccccceeeeccCccc----cCCCCCceEecccc
Confidence 988755443 388899999999974 67889999999987
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-11 Score=96.20 Aligned_cols=122 Identities=14% Similarity=0.116 Sum_probs=101.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC-CCC
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 201 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~-~~~ 201 (279)
...+|+|.+|++|+..+|.+.+...|.||.............+..|...|+.++|+|..+.|++|+.|..-++|.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 4588999999999999999999999999998877644455567899999999999999999999999999999999 444
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
.......+.+ ++..++++.|+|.+..|++|+....|.||=++.
T Consensus 89 ~WkptlvLlR--------------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 89 TWKPTLVLLR--------------INRAATCVKWSPKENKFAVGSGARLISVCYYEQ 131 (361)
T ss_pred eeccceeEEE--------------eccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence 4433332222 344899999999999999999999999987653
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.2e-10 Score=95.05 Aligned_cols=155 Identities=26% Similarity=0.308 Sum_probs=121.1
Q ss_pred ccceEeeeeecCCCCceeeCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCC
Q 023642 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 181 (279)
+..+.+|+.........+.+|...|.+++|+|++. .+++++.|+.|++||...+..... ....|.... -..|+|++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~-~~~~~~~~ 253 (466)
T COG2319 177 DGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS--TLSGHSDSV-VSSFSPDG 253 (466)
T ss_pred CCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee--ecCCCCcce-eEeECCCC
Confidence 78888888877666667888999999999999998 555559999999999886655542 245666554 33899999
Q ss_pred CEEEEEeCCCeEEEEECCCCce-eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCe
Q 023642 182 RHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (279)
Q Consensus 182 ~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~ 260 (279)
.++++++.|+.+++|++..... .... .+|...+.++.|.|++..+++++.|+.+.+||..+..
T Consensus 254 ~~~~~~~~d~~~~~~~~~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 254 SLLASGSSDGTIRLWDLRSSSSLLRTL----------------SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred CEEEEecCCCcEEEeeecCCCcEEEEE----------------ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 8899999999999999987664 1111 0155689999999998888888888889999999887
Q ss_pred EEEEEe--CCCcceeEEE
Q 023642 261 LSLRIL--AHTVNIALWI 276 (279)
Q Consensus 261 ~~~~~~--~h~~~v~~v~ 276 (279)
...... .|...+..+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~ 335 (466)
T COG2319 318 LLSSLTLKGHEGPVSSLS 335 (466)
T ss_pred eEEEeeecccCCceEEEE
Confidence 776665 7777555543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.2e-11 Score=101.74 Aligned_cols=140 Identities=13% Similarity=0.163 Sum_probs=108.2
Q ss_pred CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 116 ~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
....+..|.+.+.+-.|+|||.-|+++++||.|++|.-... ++. .+.....+|.+++|.|+.+-++.+..+ .+.|
T Consensus 96 VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRS--tl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~~I 170 (737)
T KOG1524|consen 96 VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRS--TVVQNEESIRCARWAPNSNSIVFCQGG-HISI 170 (737)
T ss_pred hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHH--HHhhcCceeEEEEECCCCCceEEecCC-eEEE
Confidence 34558899999999999999999999999999999986543 221 123445589999999998877776554 4455
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
=.+...... +.+.. |.+.|.++.|+|....+++|++|-..+|||.- |..+.+-..|..+|++|
T Consensus 171 KpL~~n~k~-----------i~WkA-----HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSv 233 (737)
T KOG1524|consen 171 KPLAANSKI-----------IRWRA-----HDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSV 233 (737)
T ss_pred eecccccce-----------eEEec-----cCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeee
Confidence 444332211 12222 66699999999999999999999999999975 78888889999999998
Q ss_pred Ee
Q 023642 276 IT 277 (279)
Q Consensus 276 ~~ 277 (279)
.+
T Consensus 234 a~ 235 (737)
T KOG1524|consen 234 AF 235 (737)
T ss_pred ee
Confidence 75
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-10 Score=101.47 Aligned_cols=132 Identities=19% Similarity=0.224 Sum_probs=89.9
Q ss_pred cceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC
Q 023642 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (279)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 180 (279)
..+.+|+.. ......+..|...+...+|||||+.|+.++.+ ..|++||+.++..... ....+ ....++|+||
T Consensus 184 ~~i~i~d~d-g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g---~~~~~~wSPD 258 (429)
T PRK01742 184 YEVRVADYD-GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRG---HNGAPAFSPD 258 (429)
T ss_pred EEEEEECCC-CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCC---ccCceeECCC
Confidence 345555543 33356678888999999999999999887654 3799999988753221 11223 3457899999
Q ss_pred CCEEEEEe-CCCeEE--EEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec-CCCeEEEEEC
Q 023642 181 QRHLVYAS-MSPIVH--IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDL 256 (279)
Q Consensus 181 ~~~l~~~~-~d~~i~--i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s-~d~~i~vwd~ 256 (279)
|+.|+.++ .++.+. +||+.++....+.. +...+....|+|||+.|+..+ .++...||++
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~-----------------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTS-----------------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRM 321 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeecc-----------------CCCCcCCEEECCCCCEEEEEECCCCCceEEEE
Confidence 99988764 677654 45776665433221 223567899999999877554 5677777766
Q ss_pred C
Q 023642 257 E 257 (279)
Q Consensus 257 ~ 257 (279)
.
T Consensus 322 ~ 322 (429)
T PRK01742 322 S 322 (429)
T ss_pred E
Confidence 4
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.2e-11 Score=95.67 Aligned_cols=128 Identities=11% Similarity=0.102 Sum_probs=102.3
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~ 196 (279)
.+++..|...|+++.|+|..+.|++++.|..-++|....+........+..++..++++.|+|.++.+++|+..+.|.||
T Consensus 48 ~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVc 127 (361)
T KOG1523|consen 48 AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVC 127 (361)
T ss_pred ceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEE
Confidence 45688999999999999999999999999999999995443433444556778889999999999999999999999998
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEEC
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~ 256 (279)
-++...--... .+..+.+.+.|.++.|+|++-.|+.|+.|+..+||..
T Consensus 128 y~E~ENdWWVs------------KhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 128 YYEQENDWWVS------------KHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred EEecccceehh------------hhhCCccccceeeeeccCCcceecccccCcceeEEEE
Confidence 77653321111 1111225568999999999999999999999998864
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-10 Score=87.53 Aligned_cols=119 Identities=17% Similarity=0.186 Sum_probs=80.5
Q ss_pred EEEEECCCCCEEEEEeC----------CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEE--eCCCeEEE
Q 023642 128 YVSQFSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA--SMSPIVHI 195 (279)
Q Consensus 128 ~~~~~spd~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~~d~~i~i 195 (279)
..+.|+|+|..|+.-.. -+...+|.++.......... ....++|.+++|+|+|+.++.. ..+..+.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~-l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE-LKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee-ccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 35789999987755332 13455665533221112121 2334579999999999987654 45679999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC---CCeEEEEECCCCeEEEEEe
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~---d~~i~vwd~~~~~~~~~~~ 266 (279)
||++......+ +...+..+.|+|+|++|++++. .|.|.+||+++.+.+.++.
T Consensus 88 yd~~~~~i~~~-------------------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~ 142 (194)
T PF08662_consen 88 YDVKGKKIFSF-------------------GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE 142 (194)
T ss_pred EcCcccEeEee-------------------cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc
Confidence 99973222111 1236788999999999999874 4679999999988888876
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.3e-10 Score=90.85 Aligned_cols=175 Identities=17% Similarity=0.178 Sum_probs=122.8
Q ss_pred cCCCCee---eccccceEeeeeecC------CCCceeeC-------CCCCeEEEEEC-------CCCCEEEEEeCCCcEE
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPV------NGPWPVDQ-------TTSRAYVSQFS-------ADGSLFVAGFQASQIR 149 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~------~~~~~l~~-------h~~~V~~~~~s-------pd~~~l~s~~~d~~i~ 149 (279)
.+|+|.- .+.|.++.+|++-+. ..+..+.. -...|+..+|- |+..++++.+++..|+
T Consensus 57 WSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh 136 (406)
T KOG2919|consen 57 WSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIH 136 (406)
T ss_pred eCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCcee
Confidence 4666552 467778888876431 11111222 24567777774 6788999999999999
Q ss_pred EEEcCCCeEEeeeeeccCCCc---ceEEEEECCCCCEEEEEeCCCeEEEEEC-CCCceeeeeccccccceeEEeeCCCCC
Q 023642 150 IYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASMSPIVHIVDV-GSGTMESLANVTEIHDGLDFSAADDGG 225 (279)
Q Consensus 150 iwd~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (279)
+||.-+|+.... .....|.. ...+++|+|||.+|++|. .+.|++||+ +.|.-....... -++..+
T Consensus 137 ~wdaftG~lraS-y~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~---------~~~k~g 205 (406)
T KOG2919|consen 137 LWDAFTGKLRAS-YRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTV---------TKGKFG 205 (406)
T ss_pred eeeccccccccc-hhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhh---------hccccc
Confidence 999999954332 22233433 357899999999998764 568999999 555432111110 011123
Q ss_pred ccccEEEEEEecC-CCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEee
Q 023642 226 YSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 226 ~~~~v~~~~~sp~-g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
..+.+.+++|+|- .+.++.|+....+-|+.-..+.+++.+-||.+.|+.+.+|
T Consensus 206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ 259 (406)
T KOG2919|consen 206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWC 259 (406)
T ss_pred ccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEec
Confidence 5668999999996 4588999999999999999999999999999999998776
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-09 Score=96.04 Aligned_cols=127 Identities=20% Similarity=0.201 Sum_probs=92.5
Q ss_pred CCCCceeeCCCCCeEEEEECCCCCEEEEEeC---CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEE-EEeC
Q 023642 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASM 189 (279)
Q Consensus 114 ~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~ 189 (279)
......+..|...+...+|+|||+.|+..+. +..|.+||+.+++... +..+.+.+...+|+|||+.|+ +.+.
T Consensus 191 g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~la~~~~~ 266 (435)
T PRK05137 191 GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL----VGNFPGMTFAPRFSPDGRKVVMSLSQ 266 (435)
T ss_pred CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE----eecCCCcccCcEECCCCCEEEEEEec
Confidence 4445668889999999999999999887753 4689999999885432 234455678899999999875 4555
Q ss_pred CC--eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-C--CeEEEEECCCCeE
Q 023642 190 SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-D--DCIYVYDLEANKL 261 (279)
Q Consensus 190 d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d--~~i~vwd~~~~~~ 261 (279)
++ .|++||+.++....+.. +........|+|||++|+..+. + ..|++||+.+++.
T Consensus 267 ~g~~~Iy~~d~~~~~~~~Lt~-----------------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 267 GGNTDIYTMDLRSGTTTRLTD-----------------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred CCCceEEEEECCCCceEEccC-----------------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence 54 47888998877644322 2224566899999998887663 3 3699999876644
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=95.39 Aligned_cols=145 Identities=14% Similarity=0.146 Sum_probs=111.5
Q ss_pred cceEeeeeecCCCCcee-------e--CCCCCeEEEEECCC--CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcce
Q 023642 104 CCHMLSRYLPVNGPWPV-------D--QTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV 172 (279)
Q Consensus 104 ~~~~~~~~~~~~~~~~l-------~--~h~~~V~~~~~spd--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 172 (279)
..+.+|++....+.+.- . .-.-+++++.|-|. ...|++++.-++|++||...++.....+.+. +.++
T Consensus 173 n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~--E~~i 250 (412)
T KOG3881|consen 173 NELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL--ENPI 250 (412)
T ss_pred cceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc--cCcc
Confidence 45567776655322221 1 12456678889987 8899999999999999999775444434444 3489
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEE
Q 023642 173 TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (279)
Q Consensus 173 ~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~ 252 (279)
+++...|++++|+++..-+.+..||++.+...... | ++-++.|.++..+|.++++++++-|+.|+
T Consensus 251 s~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~----------~-----kg~tGsirsih~hp~~~~las~GLDRyvR 315 (412)
T KOG3881|consen 251 SSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG----------L-----KGITGSIRSIHCHPTHPVLASCGLDRYVR 315 (412)
T ss_pred eeeeecCCCcEEEEecccchhheecccCceeeccc----------c-----CCccCCcceEEEcCCCceEEeeccceeEE
Confidence 99999999999999999999999999998864321 1 12456899999999999999999999999
Q ss_pred EEECCCCeEEEEE
Q 023642 253 VYDLEANKLSLRI 265 (279)
Q Consensus 253 vwd~~~~~~~~~~ 265 (279)
|+|+.+.+++...
T Consensus 316 IhD~ktrkll~kv 328 (412)
T KOG3881|consen 316 IHDIKTRKLLHKV 328 (412)
T ss_pred Eeecccchhhhhh
Confidence 9999997666444
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-10 Score=100.83 Aligned_cols=162 Identities=16% Similarity=0.130 Sum_probs=108.4
Q ss_pred ccCCCCee---e-ccccceEeeeeec-CCCCceeeCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCeEEeeeeec
Q 023642 92 NYSGRGRF---S-AADCCHMLSRYLP-VNGPWPVDQTTSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILA 165 (279)
Q Consensus 92 ~~~~~~~~---~-~~d~~~~~~~~~~-~~~~~~l~~h~~~V~~~~~spd~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~ 165 (279)
.++++|+. . ..++...+|.+.. ......+..+...+...+|+|||+.|+.++ .++...||+++.........
T Consensus 254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-- 331 (429)
T PRK01742 254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-- 331 (429)
T ss_pred eECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--
Confidence 46777753 2 2344444554432 233445677777889999999999877554 57888888765321111211
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe
Q 023642 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~ 245 (279)
.+.. ....|+|||++|+..+.++ +.+||+.++....+... + ....+.|+|||++|+++
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~----------------~--~~~~~~~sPdG~~i~~~ 389 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST----------------F--LDESPSISPNGIMIIYS 389 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC----------------C--CCCCceECCCCCEEEEE
Confidence 2322 4578999999998887765 55699988875432211 0 22457899999999999
Q ss_pred cCCCeEEEEEC--CCCeEEEEEeCCCcceeEEEe
Q 023642 246 SSDDCIYVYDL--EANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 246 s~d~~i~vwd~--~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+.++.+.+|.+ .+|+.++++.+|.+.+..+.+
T Consensus 390 s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~w 423 (429)
T PRK01742 390 STQGLGKVLQLVSADGRFKARLPGSDGQVKFPAW 423 (429)
T ss_pred EcCCCceEEEEEECCCCceEEccCCCCCCCCccc
Confidence 98888887775 358889999988877766544
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=9e-10 Score=88.12 Aligned_cols=85 Identities=20% Similarity=0.242 Sum_probs=74.5
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeCCCc-EEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQ-IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
+.++.+|.+.|.|++.+.+|.++|++|..|+ |||||..+|..+........+ ..|.+++|+|+..+|+++|..|+++|
T Consensus 174 p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~-A~iy~iaFSp~~s~LavsSdKgTlHi 252 (346)
T KOG2111|consen 174 PSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR-ADIYCIAFSPNSSWLAVSSDKGTLHI 252 (346)
T ss_pred ceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch-heEEEEEeCCCccEEEEEcCCCeEEE
Confidence 5789999999999999999999999999996 799999999888775443333 45999999999999999999999999
Q ss_pred EECCCCc
Q 023642 196 VDVGSGT 202 (279)
Q Consensus 196 ~d~~~~~ 202 (279)
|.++...
T Consensus 253 F~l~~~~ 259 (346)
T KOG2111|consen 253 FSLRDTE 259 (346)
T ss_pred EEeecCC
Confidence 9987643
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-10 Score=100.73 Aligned_cols=174 Identities=13% Similarity=0.068 Sum_probs=125.2
Q ss_pred ceEeeeeecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEE---eeeeeccCCCcceEEEEECCC
Q 023642 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI---QKDILAKSLRWTVTDTSLSPD 180 (279)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~v~~~~~sp~ 180 (279)
...+|++.....+.....-...|+++.|+| +..+++.|..+|+|.+||+..+... ........|..+++.+.|-.+
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~ 302 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN 302 (555)
T ss_pred eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence 688899988877888888899999999999 7788899999999999999876431 112234678899999999775
Q ss_pred CCE--EEEEeCCCeEEEEECCCCceeeeecccccc-------------ceeEEeeCCC----------------------
Q 023642 181 QRH--LVYASMSPIVHIVDVGSGTMESLANVTEIH-------------DGLDFSAADD---------------------- 223 (279)
Q Consensus 181 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-------------~~~~~~~~~~---------------------- 223 (279)
..- +++++.||.|..|+++.-............ ..+.|.....
T Consensus 303 ~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~ 382 (555)
T KOG1587|consen 303 EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTP 382 (555)
T ss_pred CCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcc
Confidence 544 999999999999988653321000000000 0011111100
Q ss_pred ------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECC-CCeEEEEEeCCCcceeEEEee
Q 023642 224 ------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 224 ------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~-~~~~~~~~~~h~~~v~~v~~~ 278 (279)
..|.+.|+++.++|-+..++..+.|-+|++|.-. ...++..+..+...|.++.++
T Consensus 383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWS 450 (555)
T KOG1587|consen 383 APEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWS 450 (555)
T ss_pred cccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEc
Confidence 3367889999999987766555559999999988 677888888787778877765
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.4e-10 Score=89.78 Aligned_cols=139 Identities=20% Similarity=0.170 Sum_probs=100.3
Q ss_pred eccccceEeeeeecCCCCceeeC-CCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeEEee-----------eeecc
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQ-TTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQK-----------DILAK 166 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~spd-~~~l~s~~~d~~i~iwd~~~~~~~~~-----------~~~~~ 166 (279)
...|+.+.+++-.. ..+..++. -...|++++|-|. ++.|+.|+. +-|++|..+....... +....
T Consensus 116 a~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~p 193 (445)
T KOG2139|consen 116 ATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDP 193 (445)
T ss_pred hccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCC
Confidence 45677777766555 23333433 4577999999994 456777777 5699998764311111 11123
Q ss_pred CCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe
Q 023642 167 SLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~ 245 (279)
+| .+|+++.|.+||..+++++ .|..|.|||..++....+... .-+.+.-+.|||||.+|+.+
T Consensus 194 gh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~----------------glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 194 GH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK----------------GLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred CC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc----------------CCCceeeEEEcCCCCEEEEe
Confidence 44 5799999999999999888 567899999999998766522 12367889999999999999
Q ss_pred cCCCeEEEEECC
Q 023642 246 SSDDCIYVYDLE 257 (279)
Q Consensus 246 s~d~~i~vwd~~ 257 (279)
.-|+..++|+..
T Consensus 257 t~davfrlw~e~ 268 (445)
T KOG2139|consen 257 TCDAVFRLWQEN 268 (445)
T ss_pred cccceeeeehhc
Confidence 999999999543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-09 Score=95.37 Aligned_cols=145 Identities=22% Similarity=0.240 Sum_probs=94.2
Q ss_pred CCCCceeeCCCCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEE-EEeC
Q 023642 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASM 189 (279)
Q Consensus 114 ~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~ 189 (279)
...+..+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... ....+....++|+|||+.|+ +.+.
T Consensus 193 g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l----~~~~g~~~~~~~SpDG~~l~~~~s~ 268 (433)
T PRK04922 193 GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV----ASFRGINGAPSFSPDGRRLALTLSR 268 (433)
T ss_pred CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe----ccCCCCccCceECCCCCEEEEEEeC
Confidence 44456677888899999999999999887643 4699999988854322 23334456789999999875 4455
Q ss_pred CC--eEEEEECCCCceeeeeccccccceeEEeeCCC--------------------CC-------ccccEEEEEEecCCC
Q 023642 190 SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADD--------------------GG-------YSFGIFSLKFSTDGR 240 (279)
Q Consensus 190 d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~-------~~~~v~~~~~sp~g~ 240 (279)
++ .|++||+.+++...+...........|++++. .+ +.......+|+|||+
T Consensus 269 ~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~ 348 (433)
T PRK04922 269 DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGK 348 (433)
T ss_pred CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCC
Confidence 54 69999998887654432211111122222221 00 011223578999999
Q ss_pred EEEEecCCC---eEEEEECCCCeEE
Q 023642 241 ELVAGSSDD---CIYVYDLEANKLS 262 (279)
Q Consensus 241 ~l~t~s~d~---~i~vwd~~~~~~~ 262 (279)
+++..+.++ .|.+||+.+++..
T Consensus 349 ~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 349 KIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred EEEEEECCCCceeEEEEECCCCCeE
Confidence 988654332 6999999877654
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.9e-10 Score=87.91 Aligned_cols=141 Identities=14% Similarity=0.145 Sum_probs=97.7
Q ss_pred ccceEeeeeec-CCCCceeeCC--CCCeEEEEECCCCCEEEE-EeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 103 DCCHMLSRYLP-VNGPWPVDQT--TSRAYVSQFSADGSLFVA-GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 103 d~~~~~~~~~~-~~~~~~l~~h--~~~V~~~~~spd~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
...+.+|.+-. ......+... ...+.++.-+.+..+||. |-.-|+|.|-|+.....- .......|...|.+++++
T Consensus 112 ~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln 190 (346)
T KOG2111|consen 112 ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN-APSIINAHDSDIACVALN 190 (346)
T ss_pred cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC-CceEEEcccCceeEEEEc
Confidence 44455555542 2222333322 233444333334445544 456689999999865431 112346899999999999
Q ss_pred CCCCEEEEEeCCCe-EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 179 PDQRHLVYASMSPI-VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 179 p~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
.+|..+|++|..|+ |||||..+|....-. .++. ....|++++|||+..+|+.+|.-|+|+||.++
T Consensus 191 ~~Gt~vATaStkGTLIRIFdt~~g~~l~E~--RRG~------------d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 191 LQGTLVATASTKGTLIRIFDTEDGTLLQEL--RRGV------------DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred CCccEEEEeccCcEEEEEEEcCCCcEeeee--ecCC------------chheEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence 99999999999987 899999999874432 2221 23479999999999999999999999999987
Q ss_pred C
Q 023642 258 A 258 (279)
Q Consensus 258 ~ 258 (279)
.
T Consensus 257 ~ 257 (346)
T KOG2111|consen 257 D 257 (346)
T ss_pred c
Confidence 5
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.5e-10 Score=100.36 Aligned_cols=149 Identities=13% Similarity=0.034 Sum_probs=112.4
Q ss_pred ccccceEeeeeecCC----CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC--CeEEeeeeeccCCCcceEE
Q 023642 101 AADCCHMLSRYLPVN----GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER--GWKIQKDILAKSLRWTVTD 174 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~----~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~v~~ 174 (279)
..++....|...... ....-..|.-.+++.++||.++++++|..||+|.+|.-.. .... ....++=|...|.+
T Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~-t~t~lHWH~~~V~~ 256 (792)
T KOG1963|consen 178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE-TCTLLHWHHDEVNS 256 (792)
T ss_pred EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc-cceEEEecccccce
Confidence 345555555544322 1122356777799999999999999999999999996433 2211 11234566678999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEE
Q 023642 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (279)
Q Consensus 175 ~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vw 254 (279)
++|+++|.+|++|+..+.+-+|.+.+++...+++. .++|..+.+|||+...+....|+.|.+-
T Consensus 257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRL-----------------gs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 257 LSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRL-----------------GSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred eEEecCCceEeecccceEEEEEeecCCCccccccc-----------------CCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 99999999999999999999999999986655543 2489999999999999999999999999
Q ss_pred ECCCCeEEEEEeC
Q 023642 255 DLEANKLSLRILA 267 (279)
Q Consensus 255 d~~~~~~~~~~~~ 267 (279)
...+-....++.|
T Consensus 320 ~~~dl~~k~tIsg 332 (792)
T KOG1963|consen 320 KASDLEIKSTISG 332 (792)
T ss_pred eccchhhhhhccC
Confidence 8866554444444
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.9e-09 Score=93.40 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=93.6
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEE-eCCC--cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-C--e
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAG-FQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P--I 192 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~--~ 192 (279)
.+......+..++|+|||+.|+.. +.++ .|.+||+.++.... +..+...+....|+|||+.|+..+.+ + .
T Consensus 237 ~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~ 312 (429)
T PRK03629 237 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQ 312 (429)
T ss_pred EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCEEEEEeCCCCCce
Confidence 344445556678999999988754 4444 58899998875432 22334457889999999998877654 3 4
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCC--------------------CCc------cccEEEEEEecCCCEEEEec
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADD--------------------GGY------SFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~------~~~v~~~~~sp~g~~l~t~s 246 (279)
|+++|+.++....+...........+++++. .+. ........|+|||++|+.++
T Consensus 313 Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 313 VYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSS 392 (429)
T ss_pred EEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEE
Confidence 6666777765543322111111112222221 000 01123567899999888877
Q ss_pred CCC---eEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 247 SDD---CIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 247 ~d~---~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
.++ .+.++++ +|.....+.+|.+.+..+.+
T Consensus 393 ~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~W 425 (429)
T PRK03629 393 SQGMGSVLNLVST-DGRFKARLPATDGQVKFPAW 425 (429)
T ss_pred cCCCceEEEEEEC-CCCCeEECccCCCCcCCccc
Confidence 665 3677777 46666777777776665543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.7e-11 Score=101.29 Aligned_cols=145 Identities=10% Similarity=0.055 Sum_probs=110.5
Q ss_pred eeccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 99 FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 99 ~~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
|.+....++++++........+......|..++++|.|..|+.|+.|++++.+|++-+.+..+ .++.|...+++++||
T Consensus 582 fVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk--~lr~H~~avr~Va~H 659 (733)
T KOG0650|consen 582 FVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYK--TLRLHEKAVRSVAFH 659 (733)
T ss_pred EEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhH--Hhhhhhhhhhhhhhc
Confidence 356677778888877555556677788999999999999999999999999999987654433 357888899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEC------CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEE
Q 023642 179 PDQRHLVYASMSPIVHIVDV------GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (279)
Q Consensus 179 p~~~~l~~~~~d~~i~i~d~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~ 252 (279)
+.=.++++|+.|+++.||.- .....+...+....+. . .....|..+.|+|...+|++++.|++|+
T Consensus 660 ~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~--------~-~~~~gVLd~~wHP~qpWLfsAGAd~tir 730 (733)
T KOG0650|consen 660 KRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE--------K-TNDLGVLDTIWHPRQPWLFSAGADGTIR 730 (733)
T ss_pred cccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce--------e-ecccceEeecccCCCceEEecCCCceEE
Confidence 99999999999999999842 1111111111111111 1 0123588999999999999999999999
Q ss_pred EE
Q 023642 253 VY 254 (279)
Q Consensus 253 vw 254 (279)
+|
T Consensus 731 lf 732 (733)
T KOG0650|consen 731 LF 732 (733)
T ss_pred ee
Confidence 98
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.3e-09 Score=91.30 Aligned_cols=126 Identities=18% Similarity=0.221 Sum_probs=88.1
Q ss_pred CCCceeeCCCCCeEEEEECCCCCEEEEEe---CCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEE-eCC
Q 023642 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGF---QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMS 190 (279)
Q Consensus 115 ~~~~~l~~h~~~V~~~~~spd~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d 190 (279)
.....+..+...+...+|||||+.|+..+ .+..|.+||+.+++.... ....+.+..++|+|||+.|+.. +.+
T Consensus 189 ~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l----~~~~~~~~~~~~SPDG~~La~~~~~~ 264 (429)
T PRK03629 189 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV----ASFPRHNGAPAFSPDGSKLAFALSKT 264 (429)
T ss_pred CCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc----cCCCCCcCCeEECCCCCEEEEEEcCC
Confidence 34455777788999999999999998654 245799999988854321 2223345678999999988765 334
Q ss_pred C--eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC-C--eEEEEECCCCeE
Q 023642 191 P--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKL 261 (279)
Q Consensus 191 ~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d-~--~i~vwd~~~~~~ 261 (279)
+ .|++||+.++....+.. +...+....|+|||+.|+..+.+ + .|+++|+.+++.
T Consensus 265 g~~~I~~~d~~tg~~~~lt~-----------------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 265 GSLNLYVMDLASGQIRQVTD-----------------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred CCcEEEEEECCCCCEEEccC-----------------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 4 59999999887643321 11246778999999988776643 3 566668776644
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-10 Score=98.51 Aligned_cols=160 Identities=14% Similarity=0.090 Sum_probs=114.7
Q ss_pred ccccceEeeeeecCC--CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 101 AADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
+.|+.+.+|.-.... .+.+-..-.+.-.|++......++++|+..+.|+|||+....+.+. +.+|...|+++.+.
T Consensus 54 ~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~---lkdh~stvt~v~YN 130 (673)
T KOG4378|consen 54 AGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRF---LKDHQSTVTYVDYN 130 (673)
T ss_pred CCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhh---ccCCcceeEEEEec
Confidence 455556656443221 1111122223455666555668999999999999999996544333 57999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEE-EEecCCCeEEEEECC
Q 023642 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLE 257 (279)
Q Consensus 179 p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~t~s~d~~i~vwd~~ 257 (279)
....|||+++..|.|.|..+.++......... ..+.|.-+.|+|..+++ .+++.+|.|.+||+.
T Consensus 131 ~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~---------------sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~ 195 (673)
T KOG4378|consen 131 NTDEYIASVSDGGDIIIHGTKTKQKTTTFTID---------------SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ 195 (673)
T ss_pred CCcceeEEeccCCcEEEEecccCccccceecC---------------CCCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence 99999999999999999999987764322211 12356789999987765 578899999999998
Q ss_pred CCeEEEEE-eCCCcceeEEEee
Q 023642 258 ANKLSLRI-LAHTVNIALWITC 278 (279)
Q Consensus 258 ~~~~~~~~-~~h~~~v~~v~~~ 278 (279)
...+...+ ..|..+...++.|
T Consensus 196 g~sp~~~~~~~HsAP~~gicfs 217 (673)
T KOG4378|consen 196 GMSPIFHASEAHSAPCRGICFS 217 (673)
T ss_pred CCCcccchhhhccCCcCcceec
Confidence 87777665 4788887776654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.4e-09 Score=91.75 Aligned_cols=173 Identities=20% Similarity=0.186 Sum_probs=100.9
Q ss_pred hccccCccCCCCeeeccc-cceEeeeee-cCCCCceeeCCCCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeEEe
Q 023642 86 LAGREGNYSGRGRFSAAD-CCHMLSRYL-PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQ 160 (279)
Q Consensus 86 ~~~~~~~~~~~~~~~~~d-~~~~~~~~~-~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d---~~i~iwd~~~~~~~~ 160 (279)
+.+....|+....|.+.. ....+|... .......+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...
T Consensus 155 ~tg~~g~f~~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~ 234 (427)
T PRK02889 155 LTGERGVFSTRIAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV 234 (427)
T ss_pred hcCCCcccccEEEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE
Confidence 444344454444443322 222233222 233445577888899999999999999877643 369999999885432
Q ss_pred eeeeccCCCcceEEEEECCCCCEEE-EEeCCCeEEEE--ECCCCceeeeeccccccceeEEeeCCC--------------
Q 023642 161 KDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIV--DVGSGTMESLANVTEIHDGLDFSAADD-------------- 223 (279)
Q Consensus 161 ~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 223 (279)
. ....+.+...+|+|||+.|+ +.+.++...|| |+.++....+...........|++++.
T Consensus 235 l----~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~I 310 (427)
T PRK02889 235 V----ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQI 310 (427)
T ss_pred e----ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEE
Confidence 2 22334567899999999886 45667765554 555554433322111111122322222
Q ss_pred ------CC-------ccccEEEEEEecCCCEEEEecCCC---eEEEEECCCCeEE
Q 023642 224 ------GG-------YSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLS 262 (279)
Q Consensus 224 ------~~-------~~~~v~~~~~sp~g~~l~t~s~d~---~i~vwd~~~~~~~ 262 (279)
.+ .........|+|||++|+..+.++ .|++||+.+++..
T Consensus 311 y~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 311 YRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT 365 (427)
T ss_pred EEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence 00 001123467999999988766543 6999999877654
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.4e-09 Score=89.51 Aligned_cols=123 Identities=17% Similarity=0.117 Sum_probs=105.2
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccce
Q 023642 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (279)
Q Consensus 136 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 215 (279)
-..++-|...|.|.+|+...|+...+. ....|.+.|.++.++.+-..|.+++.|+.+..|+...+...+..+..
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~----- 143 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ----- 143 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-----
Confidence 347788889999999999999665553 34688899999999999999999999999999999998876554332
Q ss_pred eEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
...+.+++.+|||..+++++ +.|++||+.+++.+.+|+||.++|+++..
T Consensus 144 -----------~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 144 -----------KPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred -----------CCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEE
Confidence 22688999999999999887 68999999999999999999999998864
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.2e-10 Score=87.86 Aligned_cols=144 Identities=15% Similarity=0.179 Sum_probs=104.7
Q ss_pred CCCCeEEEEECC-CCC--EEEEEeCCCcEEEEEcCCCeEEee-------eeeccCCCcceEEEEECCCCCEEEEEeCCCe
Q 023642 123 TTSRAYVSQFSA-DGS--LFVAGFQASQIRIYDVERGWKIQK-------DILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (279)
Q Consensus 123 h~~~V~~~~~sp-d~~--~l~s~~~d~~i~iwd~~~~~~~~~-------~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 192 (279)
-.+.+++..+.- ++. ++++|-++|.+.+||+.++..+-. ......|..+|.++.+.+.-..=++++.+..
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 356677777544 333 457788999999999998733211 1223578889999999987666677888888
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcce
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v 272 (279)
+..|.+............ ..- .+-.|..+..-||++.+||++.|+.|+||+.++..++..+..|.+.|
T Consensus 229 l~~~Sl~~s~gslq~~~e-------~~l-----knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagv 296 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKE-------ITL-----KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGV 296 (323)
T ss_pred ceeeeeccccCcccccce-------EEe-----cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcce
Confidence 888887643211000000 000 11257788899999999999999999999999999999999999999
Q ss_pred eEEEee
Q 023642 273 ALWITC 278 (279)
Q Consensus 273 ~~v~~~ 278 (279)
++|...
T Consensus 297 n~vAfs 302 (323)
T KOG0322|consen 297 NAVAFS 302 (323)
T ss_pred eEEEeC
Confidence 999753
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=88.42 Aligned_cols=152 Identities=14% Similarity=0.173 Sum_probs=112.8
Q ss_pred eccccceEeeeeecCCCCce--eeCCC-CCeEEEEECCCCCEEEEEeC----CCcEEEEEcCCCeE-EeeeeeccCCCcc
Q 023642 100 SAADCCHMLSRYLPVNGPWP--VDQTT-SRAYVSQFSADGSLFVAGFQ----ASQIRIYDVERGWK-IQKDILAKSLRWT 171 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~--l~~h~-~~V~~~~~spd~~~l~s~~~----d~~i~iwd~~~~~~-~~~~~~~~~~~~~ 171 (279)
.+.|+.+.+|++......-. .+++. .+..+++.+-.++.+++|.. |-.|.+||++..+. +.. ....|...
T Consensus 90 ~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~--~~eSH~DD 167 (376)
T KOG1188|consen 90 CSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ--LNESHNDD 167 (376)
T ss_pred eccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh--hhhhccCc
Confidence 46788999999987554432 45555 56788888878888888853 66899999987755 333 34678889
Q ss_pred eEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCC-CEEEEecCCC
Q 023642 172 VTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDD 249 (279)
Q Consensus 172 v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~t~s~d~ 249 (279)
|+++.|+| +.+.|++||.||.|.+||+............. .|...|.++.|..++ +.+.+-+...
T Consensus 168 VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-------------N~~sSI~~igw~~~~ykrI~clTH~E 234 (376)
T KOG1188|consen 168 VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-------------NHGSSIHLIGWLSKKYKRIMCLTHME 234 (376)
T ss_pred ceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-------------cccceeeeeeeecCCcceEEEEEccC
Confidence 99999999 55789999999999999998754321111000 134479999999876 3577888999
Q ss_pred eEEEEECCCCeEEEEEe
Q 023642 250 CIYVYDLEANKLSLRIL 266 (279)
Q Consensus 250 ~i~vwd~~~~~~~~~~~ 266 (279)
+..+|++..+.+...+.
T Consensus 235 tf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 235 TFAIYELEDGSEETWLE 251 (376)
T ss_pred ceeEEEccCCChhhccc
Confidence 99999999887766654
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-09 Score=98.18 Aligned_cols=159 Identities=14% Similarity=0.115 Sum_probs=110.8
Q ss_pred eeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCC----eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEE
Q 023642 120 VDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 194 (279)
+..|...|..++.+++. .+|++|+.||+|++|++..- ...+...........+..+.+.+.+..+|.++.||.|+
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 56788889899988755 99999999999999998642 11111112222456799999999999999999999999
Q ss_pred EEECCCC--ceeee---eccccccceeEEeeCCC----------------------------------CCccccEEEEEE
Q 023642 195 IVDVGSG--TMESL---ANVTEIHDGLDFSAADD----------------------------------GGYSFGIFSLKF 235 (279)
Q Consensus 195 i~d~~~~--~~~~~---~~~~~~~~~~~~~~~~~----------------------------------~~~~~~v~~~~~ 235 (279)
+.++.-- ..... ........+.....+.. ....+.|++++.
T Consensus 1124 ~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~i 1203 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVI 1203 (1431)
T ss_pred EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEe
Confidence 9988651 11100 00000001111110000 223578999999
Q ss_pred ecCCCEEEEecCCCeEEEEECCCCeEEEEEe-CCCcceeEEEee
Q 023642 236 STDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTVNIALWITC 278 (279)
Q Consensus 236 sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~v~~~ 278 (279)
+|.+.+++.|+..|.+.+||++=+.++..+. .+..+|+.|..|
T Consensus 1204 dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~ 1247 (1431)
T KOG1240|consen 1204 DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLC 1247 (1431)
T ss_pred cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEee
Confidence 9999999999999999999999888888876 455677766654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-08 Score=86.02 Aligned_cols=158 Identities=16% Similarity=0.219 Sum_probs=95.5
Q ss_pred cCCCCee--ec--cccceEeeeeecCCCC-cee--eCCCCCeEEEEECCCCCEEEEE-eCCCcEEEEEcCCCeEEee---
Q 023642 93 YSGRGRF--SA--ADCCHMLSRYLPVNGP-WPV--DQTTSRAYVSQFSADGSLFVAG-FQASQIRIYDVERGWKIQK--- 161 (279)
Q Consensus 93 ~~~~~~~--~~--~d~~~~~~~~~~~~~~-~~l--~~h~~~V~~~~~spd~~~l~s~-~~d~~i~iwd~~~~~~~~~--- 161 (279)
+++++++ .+ .++.+.+|++...... ..+ ..+......++++|++++++++ ..++.|.+||+.+...+..
T Consensus 87 ~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~ 166 (330)
T PRK11028 87 TDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP 166 (330)
T ss_pred ECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCC
Confidence 4555543 22 2566777776432111 111 1233456778999999988655 4568999999976322211
Q ss_pred -eeeccCCCcceEEEEECCCCCEEEEEeC-CCeEEEEECCC--CceeeeeccccccceeEEeeCCCCCccccEEEEEEec
Q 023642 162 -DILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST 237 (279)
Q Consensus 162 -~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 237 (279)
.... ........++|+|+|+++++++. ++.|.+||+.. +............ .... +......+.|+|
T Consensus 167 ~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p------~~~~--~~~~~~~i~~~p 237 (330)
T PRK11028 167 AEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP------ADFS--DTRWAADIHITP 237 (330)
T ss_pred Cceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC------CcCC--CCccceeEEECC
Confidence 0111 11234678999999999988775 89999999974 3332221111000 0000 112345789999
Q ss_pred CCCEEEEecC-CCeEEEEECCCC
Q 023642 238 DGRELVAGSS-DDCIYVYDLEAN 259 (279)
Q Consensus 238 ~g~~l~t~s~-d~~i~vwd~~~~ 259 (279)
+|++++++.. ++.|.+|++...
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCC
Confidence 9999998864 789999998643
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-09 Score=91.64 Aligned_cols=156 Identities=13% Similarity=0.107 Sum_probs=111.2
Q ss_pred cceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeee---ccCCCc-----ceEEE
Q 023642 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---AKSLRW-----TVTDT 175 (279)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~-----~v~~~ 175 (279)
..+...++..+.-...+....+.++++..++-..+|++|+.+|.|-.||.+....+..+-. ...|.+ .|+++
T Consensus 155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal 234 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTAL 234 (703)
T ss_pred cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEE
Confidence 3333334433333334566679999999999999999999999999999987543332211 122333 49999
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC--CCEEEEecCCCeEEE
Q 023642 176 SLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYV 253 (279)
Q Consensus 176 ~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~t~s~d~~i~v 253 (279)
.|+.+|-.+++|..+|.+.|||+++.+........ +..+|..+.|.+. ...+++. ....++|
T Consensus 235 ~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~---------------~e~pi~~l~~~~~~~q~~v~S~-Dk~~~ki 298 (703)
T KOG2321|consen 235 KFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG---------------YELPIKKLDWQDTDQQNKVVSM-DKRILKI 298 (703)
T ss_pred EecCCceeEEeeccCCcEEEEEcccCCceeecccC---------------CccceeeecccccCCCceEEec-chHHhhh
Confidence 99999999999999999999999998875443321 3458899999775 3445543 3568999
Q ss_pred EECCCCeEEEEEeCCCcceeEEE
Q 023642 254 YDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 254 wd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
||-.+|++...+... .+++.++
T Consensus 299 Wd~~~Gk~~asiEpt-~~lND~C 320 (703)
T KOG2321|consen 299 WDECTGKPMASIEPT-SDLNDFC 320 (703)
T ss_pred cccccCCceeecccc-CCcCcee
Confidence 999999999888743 3355443
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-10 Score=95.86 Aligned_cols=130 Identities=14% Similarity=0.061 Sum_probs=107.1
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
+++..| ..|..+.|-|-.=+|++++..|.++.-|+.+|+.+.. +....+.+..+.-+|-.-.+-.|...|+|.+|.
T Consensus 204 HClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~---~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 204 HCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS---IRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWS 279 (545)
T ss_pred eehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHH---HHccCCccchhhcCCccceEEEcCCCceEEecC
Confidence 445555 6688899999988999999999999999999977665 344455788889999888999999999999999
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
....+... +.. .|.++|.++++.++|+|++|.+.|..++|||++.-..+.++..
T Consensus 280 P~skePLv--KiL--------------cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 280 PNSKEPLV--KIL--------------CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred CCCcchHH--HHH--------------hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 88766522 111 1788999999999999999999999999999998776666654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-08 Score=84.81 Aligned_cols=122 Identities=10% Similarity=0.125 Sum_probs=80.5
Q ss_pred CCeEEEEECCCCCEEEEEeC-CCcEEEEEcCC-CeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCC
Q 023642 125 SRAYVSQFSADGSLFVAGFQ-ASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSG 201 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~ 201 (279)
+....++|+|++++|++++. ++.|.+|++++ +......... .+......++++|+++++++++ .++.|.+||+.+.
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 45678999999999887764 78999999974 3111111111 2223467789999999986554 6699999999763
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CCeEEEEECC
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLE 257 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~~i~vwd~~ 257 (279)
.......... .... .+ .....+.|+|+|++++++.. +++|.+|++.
T Consensus 159 g~l~~~~~~~----~~~~-~g-----~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 159 GHLVAQEPAE----VTTV-EG-----AGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred CcccccCCCc----eecC-CC-----CCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 3211000000 0000 00 13567899999999988776 8899999997
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.1e-10 Score=95.53 Aligned_cols=166 Identities=14% Similarity=0.179 Sum_probs=115.6
Q ss_pred hhhccccCc-----cCCCCee---eccccceEeeeeecCCCCce-eeCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEE
Q 023642 84 KMLAGREGN-----YSGRGRF---SAADCCHMLSRYLPVNGPWP-VDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYD 152 (279)
Q Consensus 84 ~~~~~~~~~-----~~~~~~~---~~~d~~~~~~~~~~~~~~~~-l~~h~~~V~~~~~sp--d~~~l~s~~~d~~i~iwd 152 (279)
+.|.||++. ...+|.+ ++.|..+++|+.+.-...+. -++|...|.++.|-| +.+.+++|..|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 446666653 3445555 45677899999886554444 479999999999999 567889999999999999
Q ss_pred cCCCe-------EEeeeeeccCCCcceEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeeeeccccccce-eEEeeCCC
Q 023642 153 VERGW-------KIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG-LDFSAADD 223 (279)
Q Consensus 153 ~~~~~-------~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~ 223 (279)
+...+ ..........|...|..++-.|++ ..+.+++.||+++-+|++....... ...++.. ..+.+
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p--~~~~~~~l~ny~~--- 198 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP--DEDCPSILVNYNP--- 198 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc--cccccHHHHHhch---
Confidence 98521 111222345778889999999998 6788999999999999987443110 0000000 00100
Q ss_pred CCccccEEEEEEecCC-CEEEEecCCCeEEEEEC
Q 023642 224 GGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDL 256 (279)
Q Consensus 224 ~~~~~~v~~~~~sp~g-~~l~t~s~d~~i~vwd~ 256 (279)
..-...++..+|.. .+|+.|+.|-..++||.
T Consensus 199 --~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 199 --QLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred --hhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 11146788999974 47889999999999995
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.4e-09 Score=81.52 Aligned_cols=136 Identities=12% Similarity=0.065 Sum_probs=97.3
Q ss_pred eccccceEeeeeecCCC---CceeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCe-------------EEe--
Q 023642 100 SAADCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGW-------------KIQ-- 160 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~---~~~l~~h~~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~~-------------~~~-- 160 (279)
++-|.+..+|++..... ...+-+|...|+.++|..++ +.||+.+.||.||+||++.-+ ++.
T Consensus 169 SSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRL 248 (364)
T KOG0290|consen 169 SSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRL 248 (364)
T ss_pred ecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceee
Confidence 56788899999988633 34588999999999999865 467899999999999997421 010
Q ss_pred ------------------------------eeeeccCCCcceEEEEECCC-CCEEEEEeCCCeEEEEECCCCceeeeecc
Q 023642 161 ------------------------------KDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANV 209 (279)
Q Consensus 161 ------------------------------~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 209 (279)
.+..+++|++.|.+++|.|. ...|++++.|..+.+||+..-......
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~-- 326 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGE-- 326 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCC--
Confidence 01124589999999999995 567999999999999999763321110
Q ss_pred ccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEec
Q 023642 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGS 246 (279)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s 246 (279)
... +.+. -.+.|+.+.|++. +.+++.+.
T Consensus 327 -dPi--lay~------a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 327 -DPI--LAYT------AGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred -Cch--hhhh------ccceeeeeeecccCCCEEEEEe
Confidence 000 0111 1237999999965 66777665
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-08 Score=88.17 Aligned_cols=135 Identities=18% Similarity=0.120 Sum_probs=91.1
Q ss_pred cceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEE-EEeCCCc--EEEEEcCCCeEEeeeeeccCCCcceEEEEECCC
Q 023642 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFV-AGFQASQ--IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (279)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 180 (279)
..+.+|++... ....+..+.+.+...+|+|||+.|+ +.+.++. |.+||+.++.... +..+........|+||
T Consensus 226 ~~i~~~dl~~g-~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----Lt~~~~~~~~~~~spD 300 (435)
T PRK05137 226 PRVYLLDLETG-QRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR----LTDSPAIDTSPSYSPD 300 (435)
T ss_pred CEEEEEECCCC-cEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE----ccCCCCccCceeEcCC
Confidence 34555555332 2344666777888999999999875 5555554 7777988875432 2345555677899999
Q ss_pred CCEEEEEeC-C--CeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC---CeEEEE
Q 023642 181 QRHLVYASM-S--PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVY 254 (279)
Q Consensus 181 ~~~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d---~~i~vw 254 (279)
|+.|+..+. + ..|+++|+.++....+.. +...+....|+|||++|+..+.+ ..|.+|
T Consensus 301 G~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~-----------------~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~ 363 (435)
T PRK05137 301 GSQIVFESDRSGSPQLYVMNADGSNPRRISF-----------------GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVM 363 (435)
T ss_pred CCEEEEEECCCCCCeEEEEECCCCCeEEeec-----------------CCCcccCeEECCCCCEEEEEEcCCCceEEEEE
Confidence 999887663 3 368888988776543321 11145567899999999876543 368899
Q ss_pred ECCCCe
Q 023642 255 DLEANK 260 (279)
Q Consensus 255 d~~~~~ 260 (279)
|+.++.
T Consensus 364 d~~~~~ 369 (435)
T PRK05137 364 KPDGSG 369 (435)
T ss_pred ECCCCc
Confidence 986543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.3e-08 Score=87.04 Aligned_cols=128 Identities=17% Similarity=0.184 Sum_probs=89.2
Q ss_pred CCCCceeeCCCCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEE-EeC
Q 023642 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASM 189 (279)
Q Consensus 114 ~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~ 189 (279)
......+..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+.|+. .+.
T Consensus 188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~la~~~~~ 263 (430)
T PRK00178 188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSKLAFVLSK 263 (430)
T ss_pred CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCEEEEEEcc
Confidence 33445677888899999999999999876543 369999999885432 1223334567899999998874 444
Q ss_pred CC--eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-C--CeEEEEECCCCeEE
Q 023642 190 SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-D--DCIYVYDLEANKLS 262 (279)
Q Consensus 190 d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d--~~i~vwd~~~~~~~ 262 (279)
++ .|++||+.++....+.. +........|+|||+.|+..+. + ..|+++|+.+++..
T Consensus 264 ~g~~~Iy~~d~~~~~~~~lt~-----------------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 264 DGNPEIYVMDLASRQLSRVTN-----------------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred CCCceEEEEECCCCCeEEccc-----------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 44 68888999887543321 1123456789999998876553 3 36888898877643
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.4e-08 Score=86.54 Aligned_cols=127 Identities=19% Similarity=0.241 Sum_probs=89.3
Q ss_pred CCCCceeeCCCCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEE-EeC
Q 023642 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASM 189 (279)
Q Consensus 114 ~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~ 189 (279)
......+..+...+...+|+|||++|+.+..+ ..|++||+.++..... ..+.+.+.+++|+|||+.|+. .+.
T Consensus 179 g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~----~~~~~~~~~~~~spDg~~l~~~~~~ 254 (417)
T TIGR02800 179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV----ASFPGMNGAPAFSPDGSKLAVSLSK 254 (417)
T ss_pred CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe----ecCCCCccceEECCCCCEEEEEECC
Confidence 34456677788889999999999999887654 4799999998854322 234455677999999998764 444
Q ss_pred C--CeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CC--eEEEEECCCCeE
Q 023642 190 S--PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DD--CIYVYDLEANKL 261 (279)
Q Consensus 190 d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~--~i~vwd~~~~~~ 261 (279)
+ ..|++||+.++....+.. +........|+|||++|+..+. ++ .|+++|+.+++.
T Consensus 255 ~~~~~i~~~d~~~~~~~~l~~-----------------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~ 314 (417)
T TIGR02800 255 DGNPDIYVMDLDGKQLTRLTN-----------------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV 314 (417)
T ss_pred CCCccEEEEECCCCCEEECCC-----------------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 3 368999998876543321 1113445689999998876553 33 688899887654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3e-09 Score=96.86 Aligned_cols=120 Identities=14% Similarity=0.066 Sum_probs=98.1
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecc
Q 023642 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (279)
Q Consensus 130 ~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 209 (279)
+.++++.-++++|+.-+.|.+|+........ ...+|++.|.++.|+-||+++++.|+|+++++|++.+.+......
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~- 214 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTG- 214 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccc-
Confidence 3467788899999999999999987332222 357999999999999999999999999999999999987643111
Q ss_pred ccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCc
Q 023642 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~ 270 (279)
=+|+..|+.++|.|+ .++|++.|.+.++|+.. +..+..+.+|..
T Consensus 215 --------------fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g 258 (967)
T KOG0974|consen 215 --------------FGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSG 258 (967)
T ss_pred --------------ccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhh
Confidence 148889999999998 89999999999999764 566667777754
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-08 Score=87.09 Aligned_cols=159 Identities=17% Similarity=0.165 Sum_probs=101.4
Q ss_pred hhhhccccCccCCCCeeeccc-c---ceEeeee-ecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCC---CcEEEEEcC
Q 023642 83 VKMLAGREGNYSGRGRFSAAD-C---CHMLSRY-LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVE 154 (279)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~d-~---~~~~~~~-~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d---~~i~iwd~~ 154 (279)
++.+.|....|.....|.... + ...+|-. ........+..+...+....|||||+.|+..+.+ ..|.+||+.
T Consensus 171 ~~~ltG~~g~f~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~ 250 (448)
T PRK04792 171 YEKLTGERGAFLTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIY 250 (448)
T ss_pred HHHhcCCCccccCEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECC
Confidence 345666666666666663221 1 1122222 1233345677788899999999999999876543 268899998
Q ss_pred CCeEEeeeeeccCCCcceEEEEECCCCCEEEE-EeCCC--eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEE
Q 023642 155 RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF 231 (279)
Q Consensus 155 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 231 (279)
+++.... ....+.....+|+|||+.|+. .+.++ .|+++|+.+++...+.. +.....
T Consensus 251 tg~~~~l----t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~-----------------~~~~~~ 309 (448)
T PRK04792 251 TQVREKV----TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITR-----------------HRAIDT 309 (448)
T ss_pred CCCeEEe----cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECcc-----------------CCCCcc
Confidence 8754221 122233457899999998765 45555 48888998877543321 112456
Q ss_pred EEEEecCCCEEEEecC-C--CeEEEEECCCCeEE
Q 023642 232 SLKFSTDGRELVAGSS-D--DCIYVYDLEANKLS 262 (279)
Q Consensus 232 ~~~~sp~g~~l~t~s~-d--~~i~vwd~~~~~~~ 262 (279)
..+|+|||++|+..+. + ..|+++|+.+++..
T Consensus 310 ~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 310 EPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 6899999998876553 3 36888888877643
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-08 Score=90.56 Aligned_cols=167 Identities=14% Similarity=0.147 Sum_probs=123.8
Q ss_pred CccCCCCee---eccccceEeeeeecC----CCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee
Q 023642 91 GNYSGRGRF---SAADCCHMLSRYLPV----NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI 163 (279)
Q Consensus 91 ~~~~~~~~~---~~~d~~~~~~~~~~~----~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 163 (279)
..+++.+++ +..|+.+.+|+.... ....++.-|.+.|++++|++||.+|.+|+..+.+.+|.+.++++ ++
T Consensus 211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--qf- 287 (792)
T KOG1963|consen 211 VALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--QF- 287 (792)
T ss_pred EEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc--cc-
Confidence 467888887 345788999987762 23456888999999999999999999999999999999999862 22
Q ss_pred eccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEE
Q 023642 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (279)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 243 (279)
+....++|..+.++||+.+.+....|..|.+....+-............ .+....+..+-.+.++++|.-+.++
T Consensus 288 -LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~-----~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 288 -LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPP-----TPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred -ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCC-----CccccccccccceeEEEcCCCCcee
Confidence 3455678999999999999999999999999877554432111110000 0000111234567888999777888
Q ss_pred EecCCCeEEEEECCCCeEEEEEe
Q 023642 244 AGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 244 t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
-.+..+.|.+||+-+.+.+..+.
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred ecCCCceEEEEeccccceeeeEE
Confidence 88999999999998877666654
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.9e-09 Score=85.07 Aligned_cols=171 Identities=14% Similarity=0.157 Sum_probs=118.0
Q ss_pred CccCCCCeeec-ccc-ceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeEEeeeeeccC
Q 023642 91 GNYSGRGRFSA-ADC-CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKS 167 (279)
Q Consensus 91 ~~~~~~~~~~~-~d~-~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~ 167 (279)
..|+++|++.+ ..+ .+.+-+..+.+ ...+...-+.|.-+.|..|..+++ ....|+.|.+|++...+-..++ ..
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq-~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI---de 89 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQ-LHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI---DE 89 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhh-HHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe---cc
Confidence 35788888743 222 22222222222 122333457888899999887664 5578899999999987655442 34
Q ss_pred CCcceEEEEECCCCCEEE-EEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC-----------------------
Q 023642 168 LRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD----------------------- 223 (279)
Q Consensus 168 ~~~~v~~~~~sp~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 223 (279)
...++.++.|||||+.|+ +...+-.|.+|.+.+.....+........++.|..++.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 455799999999997755 56678899999999988877776666777888877776
Q ss_pred -------------------CC-----------------c-cccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEE
Q 023642 224 -------------------GG-----------------Y-SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI 265 (279)
Q Consensus 224 -------------------~~-----------------~-~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~ 265 (279)
+| + .-.+..++|+|.+++|+.|+.|+.++|.+--+-++...+
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 00 1 134567788998999999999988888776555554443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-08 Score=83.18 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=112.6
Q ss_pred ccCCCCee---eccccceEeeeeec-----CCCCceeeC--CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEee
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLP-----VNGPWPVDQ--TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK 161 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~-----~~~~~~l~~--h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~ 161 (279)
.|+.+++| ++.|....+|+... ..++..+.+ |.+.|.|++|.-..+++.+|..+++|.+.|+.+.+.+..
T Consensus 63 qFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V 142 (609)
T KOG4227|consen 63 QFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYV 142 (609)
T ss_pred eeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeee
Confidence 46777776 34566788898754 223444544 458999999999999999999999999999999876654
Q ss_pred eeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce-eeeeccccccceeEEeeCCCCCccccEEEEEEecCCC
Q 023642 162 DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240 (279)
Q Consensus 162 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 240 (279)
.. .....+.|..+..+|..+.|++.+.++.|.+||.+.... ... |.... .....+.+.|+|...
T Consensus 143 ~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~-----------~~~AN---~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 143 AN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL-----------VLPAN---SGKNFYTAEFHPETP 207 (609)
T ss_pred ec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce-----------eeecC---CCccceeeeecCCCc
Confidence 21 223345899999999999999999999999999987652 111 11100 223567889999754
Q ss_pred -EEEEecCCCeEEEEECCC
Q 023642 241 -ELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 241 -~l~t~s~d~~i~vwd~~~ 258 (279)
+|++.+..+-+-+||++.
T Consensus 208 ~Li~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRM 226 (609)
T ss_pred eeEEeccccCCCCceeecc
Confidence 667888888899999975
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-08 Score=86.13 Aligned_cols=149 Identities=17% Similarity=0.093 Sum_probs=101.5
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.|+.+.+|.-. +....++.....+|+|++|.|+.+.++.+.. +.+.|=.+..... .+.-+.|.+-|.++.|+|
T Consensus 122 ~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k---~i~WkAHDGiiL~~~W~~ 196 (737)
T KOG1524|consen 122 AGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSK---IIRWRAHDGLVLSLSWST 196 (737)
T ss_pred ecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccccc---eeEEeccCcEEEEeecCc
Confidence 4566666666421 2222346677899999999998877665543 4666655554322 233579999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC------------CCccccEEEEEEecCCCEEEEecC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD------------GGYSFGIFSLKFSTDGRELVAGSS 247 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~v~~~~~sp~g~~l~t~s~ 247 (279)
....|++|+.|-..++||..+...-...........+.|.++.. +...+.|+.++||+||..++.|+.
T Consensus 197 ~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 197 QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred cccceeecCCceeEEeecccCcccccCChhccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCceeecccc
Confidence 99999999999999999987654422222222222333433322 335678999999999999998888
Q ss_pred CCeEEE
Q 023642 248 DDCIYV 253 (279)
Q Consensus 248 d~~i~v 253 (279)
.|.+.+
T Consensus 277 ~G~v~~ 282 (737)
T KOG1524|consen 277 TGQLIV 282 (737)
T ss_pred CceEEE
Confidence 776554
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-08 Score=83.61 Aligned_cols=104 Identities=21% Similarity=0.137 Sum_probs=78.5
Q ss_pred CCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~ 200 (279)
+| -+|++++|++||..+++++. |..|.|||.+++.++... ....+.++-+.|||||.+|+.+.-|+..++|+...
T Consensus 194 gh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~---~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 194 GH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI---PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ 269 (445)
T ss_pred CC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc---ccCCCceeeEEEcCCCCEEEEecccceeeeehhcc
Confidence 44 78999999999999998875 568999999999765532 12334688999999999999999999999995432
Q ss_pred -CceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 201 -GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 201 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
-....... ..+.|...+|+|+|++|+..+
T Consensus 270 ~wt~erw~l-----------------gsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 270 SWTKERWIL-----------------GSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred cceecceec-----------------cCCceeeeeecCCCCEEEEEE
Confidence 22211110 223788999999999876544
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-07 Score=80.57 Aligned_cols=145 Identities=16% Similarity=0.137 Sum_probs=91.9
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIV 196 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~ 196 (279)
..+......-..+.|+|||+++++++.|+.|.++|+.+.+.+..+.. .....+++++|||+++++++ ..+.+.++
T Consensus 30 ~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----G~~~~~i~~s~DG~~~~v~n~~~~~v~v~ 105 (369)
T PF02239_consen 30 ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV----GGNPRGIAVSPDGKYVYVANYEPGTVSVI 105 (369)
T ss_dssp EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-----SSEEEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec----CCCcceEEEcCCCCEEEEEecCCCceeEe
Confidence 34554444445678999999999999999999999999987766432 22478899999999988765 68999999
Q ss_pred ECCCCceeeeecccccc--------cee---------EEeeCCC---------CC---------ccccEEEEEEecCCCE
Q 023642 197 DVGSGTMESLANVTEIH--------DGL---------DFSAADD---------GG---------YSFGIFSLKFSTDGRE 241 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~--------~~~---------~~~~~~~---------~~---------~~~~v~~~~~sp~g~~ 241 (279)
|.++.+........... .++ .+.-... +. -........|+|++++
T Consensus 106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry 185 (369)
T PF02239_consen 106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY 185 (369)
T ss_dssp ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred ccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence 99987764433221100 011 0110000 00 0123456789999998
Q ss_pred EEEe-cCCCeEEEEECCCCeEEEEEe
Q 023642 242 LVAG-SSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 242 l~t~-s~d~~i~vwd~~~~~~~~~~~ 266 (279)
++.+ ..+..|-++|.++++.+..+.
T Consensus 186 ~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 186 FLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred eeecccccceeEEEeeccceEEEEee
Confidence 7664 456799999999998887765
|
... |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=9e-08 Score=84.07 Aligned_cols=161 Identities=17% Similarity=0.187 Sum_probs=98.9
Q ss_pred ccCCCCee----eccccceEeeeeec-CCCCceeeCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEc--CCCeEEeeee
Q 023642 92 NYSGRGRF----SAADCCHMLSRYLP-VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ-ASQIRIYDV--ERGWKIQKDI 163 (279)
Q Consensus 92 ~~~~~~~~----~~~d~~~~~~~~~~-~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~-d~~i~iwd~--~~~~~~~~~~ 163 (279)
.++++|.. .+.++...+|.+.. ......+..+...+....|+|||++|+..+. ++...+|.+ .++... ..
T Consensus 246 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~l- 323 (427)
T PRK02889 246 AWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RV- 323 (427)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EE-
Confidence 45666642 23344444555432 2233445666666778899999998876654 456666654 444322 21
Q ss_pred eccCCCcceEEEEECCCCCEEEEEeCCC---eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC
Q 023642 164 LAKSLRWTVTDTSLSPDQRHLVYASMSP---IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240 (279)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 240 (279)
...+ ......+|+|||++|+..+.++ .|.+||+.+++...+... .......|+|||+
T Consensus 324 t~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~------------------~~~~~p~~spdg~ 383 (427)
T PRK02889 324 TFTG--SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT------------------TRDESPSFAPNGR 383 (427)
T ss_pred ecCC--CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC------------------CCccCceECCCCC
Confidence 1222 2345678999999998777554 699999988875433210 1235679999999
Q ss_pred EEEEecCCC---eEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 241 ELVAGSSDD---CIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 241 ~l~t~s~d~---~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
+|+..+.++ .+++.++ +|.....+..+.+.+...
T Consensus 384 ~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p 420 (427)
T PRK02889 384 YILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREP 420 (427)
T ss_pred EEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCC
Confidence 988776443 4677777 466666676555554443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.3e-09 Score=92.67 Aligned_cols=109 Identities=19% Similarity=0.180 Sum_probs=88.6
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceee
Q 023642 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~ 205 (279)
.|..++|-|||..|+.+.. .++.+||...|..+.. +.+|...|.+++|+.||+.+++|+.|+.|.+|...-.....
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqt---LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQP---LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK 89 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccc---cccccceEEEEEEccCCceeccCCCceeEEEecccccceee
Confidence 8999999999999887765 5899999999976664 68999999999999999999999999999999875433211
Q ss_pred eeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
. .|...|-|+.|+|-...|++++-.. .-+|...
T Consensus 90 Y------------------SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~ 122 (1081)
T KOG1538|consen 90 Y------------------SHNDAIQCMSFNPITHQLASCSLSD-FGLWSPE 122 (1081)
T ss_pred e------------------ccCCeeeEeecCchHHHhhhcchhh-ccccChh
Confidence 1 1666899999999988898877533 4566543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-07 Score=83.87 Aligned_cols=146 Identities=11% Similarity=0.082 Sum_probs=92.7
Q ss_pred eEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeC-CCc--EEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC
Q 023642 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ-ASQ--IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (279)
Q Consensus 106 ~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 182 (279)
+.+|++... ....+..+.......+|+|||++|+..+. ++. |.++|+.++..... ... .......+|+|||+
T Consensus 274 Iy~~d~~~g-~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l--t~~--g~~~~~~~~SpDG~ 348 (433)
T PRK04922 274 IYVMDLGSR-QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL--TFQ--GNYNARASVSPDGK 348 (433)
T ss_pred EEEEECCCC-CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--ecC--CCCccCEEECCCCC
Confidence 444444322 22345556666678899999999887664 444 67777777643221 122 22355789999999
Q ss_pred EEEEEeCCC---eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC---CeEEEEEC
Q 023642 183 HLVYASMSP---IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDL 256 (279)
Q Consensus 183 ~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d---~~i~vwd~ 256 (279)
+|+..+.++ .|.+||+.+++...+... .......|+|||++++..+.+ ..|+++++
T Consensus 349 ~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~------------------~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 349 KIAMVHGSGGQYRIAVMDLSTGSVRTLTPG------------------SLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred EEEEEECCCCceeEEEEECCCCCeEECCCC------------------CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 998765443 699999988775432210 123456899999988876643 36888998
Q ss_pred CCCeEEEEEeCCCcceeEE
Q 023642 257 EANKLSLRILAHTVNIALW 275 (279)
Q Consensus 257 ~~~~~~~~~~~h~~~v~~v 275 (279)
. +.....+..+.+.+..+
T Consensus 411 ~-g~~~~~l~~~~g~~~~p 428 (433)
T PRK04922 411 D-GRVRQRLVSADGEVREP 428 (433)
T ss_pred C-CCceEEcccCCCCCCCC
Confidence 5 45566666555555443
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.5e-09 Score=88.73 Aligned_cols=115 Identities=15% Similarity=0.157 Sum_probs=90.5
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 198 (279)
.+..-.+.+..+.-+|-+..+-+|...|+|.+|.....+++.+ ...|.++|.++++.|+|+|+++.+.|..++|||+
T Consensus 246 ~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK---iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 246 SIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK---ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL 322 (545)
T ss_pred HHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH---HHhcCCCcceEEECCCCcEEeecccccceeEeee
Confidence 3555678889999999999999999999999999988877665 4589999999999999999999999999999999
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
++-........ ......++||..| ++..+....|.||.
T Consensus 323 R~~~ql~t~~t-----------------p~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 323 RNFYQLHTYRT-----------------PHPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred ccccccceeec-----------------CCCcccccccccc--ceeeecCCeeeeeh
Confidence 98664221111 0256678887555 33445556688884
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-08 Score=85.44 Aligned_cols=104 Identities=10% Similarity=0.151 Sum_probs=83.4
Q ss_pred eccccceEeeeeecCCCCce-eeCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEE
Q 023642 100 SAADCCHMLSRYLPVNGPWP-VDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~-l~~h~~~V~~~~~sp--d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 176 (279)
++.|..+++|++.......- ..+|...|....|-| +.+.+++.+.||++++=.+.....+.....+..|.++|..++
T Consensus 160 gSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhkla 239 (559)
T KOG1334|consen 160 GSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLA 239 (559)
T ss_pred cCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceee
Confidence 56788899999988776655 578999999999999 557899999999999988765444444455678999999999
Q ss_pred ECCCCCE-EEEEeCCCeEEEEECCCCce
Q 023642 177 LSPDQRH-LVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 177 ~sp~~~~-l~~~~~d~~i~i~d~~~~~~ 203 (279)
.-|+..+ |.+++.|+.+.-+|++.+..
T Consensus 240 v~p~sp~~f~S~geD~~v~~~Dlr~~~p 267 (559)
T KOG1334|consen 240 VEPDSPKPFLSCGEDAVVFHIDLRQDVP 267 (559)
T ss_pred ecCCCCCcccccccccceeeeeeccCCc
Confidence 9997755 88999999888888875443
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6e-07 Score=70.78 Aligned_cols=128 Identities=14% Similarity=-0.001 Sum_probs=95.0
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCC-eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceee
Q 023642 127 AYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (279)
Q Consensus 127 V~~~~~spd~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~ 205 (279)
+.+++++||++++++.+....|..|.++.. +.+.+ +........=.+..|+.....+|++..||++.|||++.-....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 889999999999999999999999999754 33333 2334444556788999999999999999999999999755322
Q ss_pred eeccccccceeEEeeCCCCCccccEEEEEEecCCC--EEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
... ......|.+.+..+.|+|-|. +|+..-.-+.+++.|++++.-.+.+.
T Consensus 240 ~~~-----------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 240 AEI-----------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred hhh-----------cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 111 111123788999999998665 34444445689999999987666654
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-07 Score=80.98 Aligned_cols=178 Identities=15% Similarity=0.211 Sum_probs=118.2
Q ss_pred cccCCccccccccCCCCCcccchhhhhccccCc---cCCCCeeeccccceEeee-----ee-------cC-CC-------
Q 023642 60 LKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGN---YSGRGRFSAADCCHMLSR-----YL-------PV-NG------- 116 (279)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~-----~~-------~~-~~------- 116 (279)
|+.+|....++++.+.....+..+++..-.+.. ......|.-.|.....|+ ++ +. ..
T Consensus 173 lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~ 252 (566)
T KOG2315|consen 173 LSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQT 252 (566)
T ss_pred ecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccce
Confidence 555666677777777666665555555444332 233445666777777776 11 00 00
Q ss_pred Cce--eeC--------CCCCeEEEEECCCCCEEEE--EeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEE
Q 023642 117 PWP--VDQ--------TTSRAYVSQFSADGSLFVA--GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (279)
Q Consensus 117 ~~~--l~~--------h~~~V~~~~~spd~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 184 (279)
.+. +.+ -.++|.++.|+|+++.|+. |-.=.++-|||++.. .+.. -.+++-.++-|+|.|++|
T Consensus 253 Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~d-----f~egpRN~~~fnp~g~ii 326 (566)
T KOG2315|consen 253 LYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFD-----FPEGPRNTAFFNPHGNII 326 (566)
T ss_pred EEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEe-----CCCCCccceEECCCCCEE
Confidence 011 112 2799999999999988755 455568999998854 3332 223466788999999999
Q ss_pred EEEeC---CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC------CCeEEEEE
Q 023642 185 VYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYD 255 (279)
Q Consensus 185 ~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~------d~~i~vwd 255 (279)
+.++- -|.+-+||+.+.+++..... ...+-+.|+|||++|+|+.. |+.++||+
T Consensus 327 ~lAGFGNL~G~mEvwDv~n~K~i~~~~a------------------~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 327 LLAGFGNLPGDMEVWDVPNRKLIAKFKA------------------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred EEeecCCCCCceEEEeccchhhcccccc------------------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 88774 47899999998665432221 14567899999999998763 67899999
Q ss_pred CCCCeEE
Q 023642 256 LEANKLS 262 (279)
Q Consensus 256 ~~~~~~~ 262 (279)
.. |..+
T Consensus 389 yt-G~~l 394 (566)
T KOG2315|consen 389 YT-GSLL 394 (566)
T ss_pred ec-Ccee
Confidence 85 5544
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.2e-08 Score=90.70 Aligned_cols=133 Identities=17% Similarity=0.212 Sum_probs=95.0
Q ss_pred CCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcc--eEEEEECCCCCE-EEEEeCCCeEEEEE
Q 023642 122 QTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT--VTDTSLSPDQRH-LVYASMSPIVHIVD 197 (279)
Q Consensus 122 ~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--v~~~~~sp~~~~-l~~~~~d~~i~i~d 197 (279)
+-...|+++.-+. .|+.+++|..||.|++||.+....-..+...+.|... |..+.+.+.|-- |++|+.||.|++||
T Consensus 1206 ~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1206 GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLD 1285 (1387)
T ss_pred CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEe
Confidence 4456677776553 5799999999999999998765332222334677766 999999997755 99999999999999
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
++........... .+-+ +.+..+++..++....+|+|+. +.|+||++. |+.+..+..
T Consensus 1286 lR~~~~e~~~~iv---------~~~~--yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~ 1342 (1387)
T KOG1517|consen 1286 LRMSSKETFLTIV---------AHWE--YGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKY 1342 (1387)
T ss_pred cccCcccccceee---------eccc--cCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhccccc
Confidence 9985332221111 0000 1125899999999999999998 999999986 555545443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-07 Score=80.90 Aligned_cols=135 Identities=19% Similarity=0.129 Sum_probs=89.6
Q ss_pred ceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEE-EeCCC--cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCC
Q 023642 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVA-GFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (279)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 181 (279)
.+.+|++... ....+..+...+.+++|+|||+.|+. .+.++ .|.+||+.++.... ...+........|+|||
T Consensus 215 ~i~v~d~~~g-~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~s~dg 289 (417)
T TIGR02800 215 EIYVQDLATG-QREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR----LTNGPGIDTEPSWSPDG 289 (417)
T ss_pred EEEEEECCCC-CEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE----CCCCCCCCCCEEECCCC
Confidence 3444544322 22335556677788999999997764 44444 68899998774332 22333445577999999
Q ss_pred CEEEEEeCC-C--eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC---eEEEEE
Q 023642 182 RHLVYASMS-P--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYD 255 (279)
Q Consensus 182 ~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~---~i~vwd 255 (279)
+.|+..+.. + .|+++|+.+++...+.. +...+....|+|+|++++..+.++ .|.+||
T Consensus 290 ~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~-----------------~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d 352 (417)
T TIGR02800 290 KSIAFTSDRGGSPQIYMMDADGGEVRRLTF-----------------RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMD 352 (417)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEEeec-----------------CCCCccCeEECCCCCEEEEEEccCCceEEEEEe
Confidence 998776543 2 68888888766433221 112456788999999998877765 799999
Q ss_pred CCCCeE
Q 023642 256 LEANKL 261 (279)
Q Consensus 256 ~~~~~~ 261 (279)
+.++..
T Consensus 353 ~~~~~~ 358 (417)
T TIGR02800 353 LDGGGE 358 (417)
T ss_pred CCCCCe
Confidence 987643
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3e-08 Score=88.00 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=92.3
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC-CCeEEeeeeeccCCCcceEEEEECCCC-CEEEEEeCCCeEEEE
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIV 196 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~ 196 (279)
....|.++|+++.++|=+..++..+.|-+++||.-. ...++. ....+...|++++|||.. ..++++..||.+.+|
T Consensus 393 ~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~---~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iW 469 (555)
T KOG1587|consen 393 TFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLL---SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIW 469 (555)
T ss_pred cccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcch---hhhhccceeeeeEEcCcCceEEEEEcCCCceehh
Confidence 456789999999999976665555559999999877 332222 234556679999999965 457788889999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
|+......+...... +....+.+.|+++|+.|+.|...|++++|++..
T Consensus 470 DLl~~~~~Pv~s~~~--------------~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 470 DLLQDDEEPVLSQKV--------------CSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred hhhccccCCcccccc--------------cccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 998766543332211 123667788899999999999999999999964
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-07 Score=81.26 Aligned_cols=121 Identities=19% Similarity=0.248 Sum_probs=80.2
Q ss_pred CCeEEEEECCCCCEEEEEe-CCCcEEEE--EcCC-CeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC---CeEEEEE
Q 023642 125 SRAYVSQFSADGSLFVAGF-QASQIRIY--DVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVD 197 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~-~d~~i~iw--d~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~i~d 197 (279)
......+|+|||+.|+..+ .++...+| ++.. +..... +..+...+....|+|||+.|+..+.+ ..|.+||
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~---lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~d 357 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL---LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYD 357 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE---eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEE
Confidence 4456789999999887665 46655555 4432 222222 22333457788999999998876643 4799999
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC---CCeEEEEECCCCeEEEEE
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRI 265 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~---d~~i~vwd~~~~~~~~~~ 265 (279)
+.+++...+... ...+....|+|||+.|+..+. ...|++||+.+++.....
T Consensus 358 l~~g~~~~Lt~~-----------------~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 358 LATGRDYQLTTS-----------------PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCCCCeEEccCC-----------------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 998886543321 114566899999998875432 357999999887654444
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-08 Score=82.96 Aligned_cols=119 Identities=14% Similarity=0.161 Sum_probs=83.9
Q ss_pred EEEEECCCCCEEEEE---eCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee
Q 023642 128 YVSQFSADGSLFVAG---FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (279)
Q Consensus 128 ~~~~~spd~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~ 204 (279)
+++.|..+......+ +....+.+|....+.+. ...+|-..+.+++|+||+++|+++..|..|++-........
T Consensus 111 ~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I 186 (390)
T KOG3914|consen 111 TAISFIREDTSVLVADKAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI 186 (390)
T ss_pred ceeeeeeccceEEEEeecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch
Confidence 334444444444333 44455666665554332 24689899999999999999999999999999776654332
Q ss_pred eeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
.. |. -||..-|..++.-++ ..|+++|.|++|++||+++|+++.++.
T Consensus 187 es-----------fc----lGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 187 ES-----------FC----LGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred hh-----------hc----cccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence 11 11 136668999998755 568999999999999999999987664
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-07 Score=80.71 Aligned_cols=112 Identities=19% Similarity=0.175 Sum_probs=79.6
Q ss_pred CEE-EEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccce
Q 023642 137 SLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (279)
Q Consensus 137 ~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 215 (279)
+++ ++-..+++|.+.|..+.+.+..+.. .......+.|+|||+++++++.|+.|.++|+.+.+........
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~---~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G----- 77 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPT---GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG----- 77 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE----STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-----
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcC---CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-----
Confidence 344 4556789999999999877766432 1223345789999999999999999999999999875443321
Q ss_pred eEEeeCCCCCccccEEEEEEecCCCEEEEec-CCCeEEEEECCCCeEEEEEeCC
Q 023642 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s-~d~~i~vwd~~~~~~~~~~~~h 268 (279)
....++++|+||++++++. .++.+.++|.++.+++++++..
T Consensus 78 ------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 78 ------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp ------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred ------------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence 1567899999999998776 5889999999999999988754
|
... |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-07 Score=86.90 Aligned_cols=144 Identities=19% Similarity=0.176 Sum_probs=100.8
Q ss_pred eccccceEeeeeecCC--CCcee------eCC----CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC
Q 023642 100 SAADCCHMLSRYLPVN--GPWPV------DQT----TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS 167 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~--~~~~l------~~h----~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 167 (279)
.+.|+.+.+|+..... .+..+ .++ .+.=.-++|.....+|++++.-..|+|||.....++..+. .+
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP--~~ 1206 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP--YG 1206 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc--cC
Confidence 5678888999877653 33322 121 2222556788876677766667899999999887666532 23
Q ss_pred CCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCcccc--EEEEEEecCCC-EEE
Q 023642 168 LRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG--IFSLKFSTDGR-ELV 243 (279)
Q Consensus 168 ~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~sp~g~-~l~ 243 (279)
....|+++.-+- .|+.|+.|..||.+++||.+.......... +.. |+.. |..+.+-+.|- .|+
T Consensus 1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~--------~R~-----h~~~~~Iv~~slq~~G~~elv 1273 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV--------YRE-----HNDVEPIVHLSLQRQGLGELV 1273 (1387)
T ss_pred CCccceeecccccCCceEEEeecCCceEEeecccCCcccccee--------ecc-----cCCcccceeEEeecCCCccee
Confidence 444577776543 479999999999999999997665333222 222 3335 89999988665 499
Q ss_pred EecCCCeEEEEECCC
Q 023642 244 AGSSDDCIYVYDLEA 258 (279)
Q Consensus 244 t~s~d~~i~vwd~~~ 258 (279)
+|+.||.|++||++.
T Consensus 1274 Sgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRM 1288 (1387)
T ss_pred eeccCCeEEEEeccc
Confidence 999999999999987
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-08 Score=56.76 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=33.3
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYD 152 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd 152 (279)
..+.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45889999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-06 Score=73.70 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=104.3
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeCCC-cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQAS-QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
..+.-+|.+.|.-..+.-++.-++.|..|| .+-|+|.++++.... ...-+.|.+++.+|+|++++.+.....+.+
T Consensus 352 ~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~----e~~lg~I~av~vs~dGK~~vvaNdr~el~v 427 (668)
T COG4946 352 YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI----EKDLGNIEAVKVSPDGKKVVVANDRFELWV 427 (668)
T ss_pred eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe----eCCccceEEEEEcCCCcEEEEEcCceEEEE
Confidence 334567888899999999999999999999 999999999864432 344457999999999999999999999999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC----eEEEEECCCCeEEEE
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----CIYVYDLEANKLSLR 264 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~----~i~vwd~~~~~~~~~ 264 (279)
.|+.++....+-+. -.+-|+.+.|+|+++++|-+--++ .|+++|+.+++....
T Consensus 428 ididngnv~~idkS----------------~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 428 IDIDNGNVRLIDKS----------------EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred EEecCCCeeEeccc----------------ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 99999997544332 223799999999999999876555 699999998775543
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.9e-07 Score=75.15 Aligned_cols=137 Identities=16% Similarity=0.157 Sum_probs=101.1
Q ss_pred CCeEEEEECCCC-CEEEEEeCC--CcEEEEEcCCCeEEeeeeecc------CCCcceEEEEECCC--CCEEEEEeCCCeE
Q 023642 125 SRAYVSQFSADG-SLFVAGFQA--SQIRIYDVERGWKIQKDILAK------SLRWTVTDTSLSPD--QRHLVYASMSPIV 193 (279)
Q Consensus 125 ~~V~~~~~spd~-~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~------~~~~~v~~~~~sp~--~~~l~~~~~d~~i 193 (279)
..+..+.-+|.. ..+++|+.. ..+.+||+.+.+.+....... ...-.++++.|-|. ...|+++..-+.+
T Consensus 149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv 228 (412)
T KOG3881|consen 149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV 228 (412)
T ss_pred CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence 556666666644 455679988 899999999875544321111 11224678889887 7889999999999
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEE-EeCCCcce
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTVNI 272 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~-~~~h~~~v 272 (279)
++||.+.++.. +..+. |. ...++++...|+|+++++|..-+.+..||+++++.+.. +.|-.+.|
T Consensus 229 R~YDt~~qRRP-V~~fd-------~~-------E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsi 293 (412)
T KOG3881|consen 229 RLYDTRHQRRP-VAQFD-------FL-------ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSI 293 (412)
T ss_pred EEecCcccCcc-eeEec-------cc-------cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCc
Confidence 99999976642 22221 11 12899999999999999999999999999999988766 77877777
Q ss_pred eEEE
Q 023642 273 ALWI 276 (279)
Q Consensus 273 ~~v~ 276 (279)
+++.
T Consensus 294 rsih 297 (412)
T KOG3881|consen 294 RSIH 297 (412)
T ss_pred ceEE
Confidence 7764
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.2e-08 Score=84.55 Aligned_cols=132 Identities=14% Similarity=0.170 Sum_probs=104.3
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC--CCEEEEEeCCCeEE
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVH 194 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~ 194 (279)
...|..|.+.|+.+.|+..|..|++|+.|.+|.+||...+.....+ ..+|...|....|-|. .+.|++++.||.++
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCcee
Confidence 3458899999999999999999999999999999999988665543 3688888999999994 46799999999999
Q ss_pred EEECCCC-ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC-EEEEecCCCeEEEEECCCCeEEEE
Q 023642 195 IVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLR 264 (279)
Q Consensus 195 i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~t~s~d~~i~vwd~~~~~~~~~ 264 (279)
+=.+... .+...... ..|.+.|..++.-|+.. .|.+++.|+.+.-+|++++.+...
T Consensus 213 ~s~i~~t~~~e~t~rl--------------~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~ 270 (559)
T KOG1334|consen 213 VSEILETGYVENTKRL--------------APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK 270 (559)
T ss_pred eeeeccccceecceec--------------ccccCccceeeecCCCCCcccccccccceeeeeeccCCccce
Confidence 8766543 32211111 12777999999999855 477999999999999988654433
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.7e-07 Score=77.74 Aligned_cols=128 Identities=20% Similarity=0.166 Sum_probs=77.1
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeC-----CCcEEEEEcCCCe--EEeeeeeccCCCcceEEEEECCCCCEEEEEe-
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQ-----ASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYAS- 188 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~-----d~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~- 188 (279)
...+....+.....+|||||+.|+..+. +..+.+|++..+. ..... ...........+|+|||+.|+..+
T Consensus 223 ~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l--t~~~~~~~~~p~wSPDG~~Laf~s~ 300 (428)
T PRK01029 223 GKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL--LNEAFGTQGNPSFSPDGTRLVFVSN 300 (428)
T ss_pred ceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe--ecCCCCCcCCeEECCCCCEEEEEEC
Confidence 3445555666778899999998876543 2234447776531 11121 112223346789999999887665
Q ss_pred CCCeEEEE--ECCC--CceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC---CeEEEEECCCCeE
Q 023642 189 MSPIVHIV--DVGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKL 261 (279)
Q Consensus 189 ~d~~i~i~--d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d---~~i~vwd~~~~~~ 261 (279)
.++...+| ++.. +....+.. +...+....|||||++|+..+.+ ..|++||+.+++.
T Consensus 301 ~~g~~~ly~~~~~~~g~~~~~lt~-----------------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 301 KDGRPRIYIMQIDPEGQSPRLLTK-----------------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD 363 (428)
T ss_pred CCCCceEEEEECcccccceEEecc-----------------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence 45644444 4432 21111110 11245678999999998876543 3799999998876
Q ss_pred EE
Q 023642 262 SL 263 (279)
Q Consensus 262 ~~ 263 (279)
..
T Consensus 364 ~~ 365 (428)
T PRK01029 364 YQ 365 (428)
T ss_pred EE
Confidence 43
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.5e-08 Score=80.12 Aligned_cols=131 Identities=15% Similarity=0.234 Sum_probs=98.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-----eEEeeeeeccCCCcceEEEEECC-CCCEEEEEeCCCeEEEE
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-----WKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIV 196 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~ 196 (279)
-.+.|.++.|...++++..|...|.|..+|++.+ ++... --|.+.|+++..-. ++++|.+.+.+|+|++|
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r----lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLy 326 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR----LYHDSSVTSLQILQFSQQKLMASDMTGKIKLY 326 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE----EEcCcchhhhhhhccccceEeeccCcCceeEe
Confidence 4678899999999999999999999999999864 34333 24667888888766 78899999999999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
|++.-++..-.. .+.+|.+ ...-.-+...+....+++++.|...+||.++.|..+.+++-.
T Consensus 327 D~R~~K~~~~V~--------qYeGHvN---~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 327 DLRATKCKKSVM--------QYEGHVN---LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eehhhhccccee--------eeecccc---cccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 999766532111 3444332 111222334566778888999999999999999999988743
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-06 Score=77.44 Aligned_cols=121 Identities=19% Similarity=0.185 Sum_probs=81.2
Q ss_pred eeCCCCCeEEEEECCCCCEEEE-EeCCC--cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC-C--CeE
Q 023642 120 VDQTTSRAYVSQFSADGSLFVA-GFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-S--PIV 193 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d--~~i 193 (279)
+....+.+...+|+|||+.|+. ...++ .|.+||+.++.... +..+........|+|||+.|+..+. + ..|
T Consensus 238 l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~i 313 (430)
T PRK00178 238 ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR----VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQI 313 (430)
T ss_pred ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE----cccCCCCcCCeEECCCCCEEEEEECCCCCceE
Confidence 4444455667899999998874 44454 68888998875432 2334445667899999998876653 3 368
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC-C--eEEEEECCCCeE
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKL 261 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d-~--~i~vwd~~~~~~ 261 (279)
+++|+.+++...+.. .+ .......|+|||++|+..+.+ + .|.+||+.+++.
T Consensus 314 y~~d~~~g~~~~lt~----------~~-------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 314 YKVNVNGGRAERVTF----------VG-------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred EEEECCCCCEEEeec----------CC-------CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 888888777543321 00 022356899999998876543 2 588999988764
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.8e-07 Score=72.11 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=91.0
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceee
Q 023642 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMES 205 (279)
Q Consensus 127 V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~ 205 (279)
..++.|++.+..++++-.+|.+.+-+...+ .+.+....+.|+-..+-+.|+- +.+.+.+|+.|+.+..||++-... .
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-~ 201 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-F 201 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-e
Confidence 456789999999999999999986554444 2333334578888899999976 446889999999999999993321 1
Q ss_pred eeccccccceeEEeeCCCCCccccEEEEEEec-CCCEEEEecCCCeEEEEECCC-CeEEEE
Q 023642 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEA-NKLSLR 264 (279)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~t~s~d~~i~vwd~~~-~~~~~~ 264 (279)
+.. ..+.|...|.++.-+| .+.+++||+.|..|++||.+. ++++..
T Consensus 202 i~~-------------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~ 249 (339)
T KOG0280|consen 202 IWH-------------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK 249 (339)
T ss_pred eee-------------cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc
Confidence 111 1112777898988876 478999999999999999984 565543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-06 Score=76.81 Aligned_cols=121 Identities=22% Similarity=0.275 Sum_probs=79.6
Q ss_pred eeCCCCCeEEEEECCCCCEEEE-EeCCCc--EEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC-C--CeE
Q 023642 120 VDQTTSRAYVSQFSADGSLFVA-GFQASQ--IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-S--PIV 193 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s-~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d--~~i 193 (279)
+..........+|+|||+.|+. .+.++. |.+||+.+++... ...+.......+|+|||+.|+..+. + ..|
T Consensus 257 lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~----lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~I 332 (448)
T PRK04792 257 VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR----ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQI 332 (448)
T ss_pred ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE----CccCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 4333444567899999998865 556664 7778888775432 2334445677899999998876653 3 357
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CC--eEEEEECCCCeE
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DD--CIYVYDLEANKL 261 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~--~i~vwd~~~~~~ 261 (279)
+++|+.+++...+.. .+ ......+|+|||++|+..+. ++ .|.++|+.+++.
T Consensus 333 y~~dl~~g~~~~Lt~----------~g-------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 333 YRVNLASGKVSRLTF----------EG-------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred EEEECCCCCEEEEec----------CC-------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence 777888776543321 00 02345689999999887654 33 577788887764
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.8e-08 Score=79.32 Aligned_cols=142 Identities=18% Similarity=0.182 Sum_probs=96.6
Q ss_pred eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC-----CcceEEEEECCC-CCEEEEEeCCCeEE
Q 023642 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL-----RWTVTDTSLSPD-QRHLVYASMSPIVH 194 (279)
Q Consensus 121 ~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~sp~-~~~l~~~~~d~~i~ 194 (279)
.+|+-.|+++.++.|...++++. |-+|.+|.++-...--.+.....+ ..-|++..|+|. .+.++..+..|+|+
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred ccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 57999999999999999998775 689999998743211121222222 235889999995 56788899999999
Q ss_pred EEECCCCceeeee-ccccc----cceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEEC-CCCeEEEEEeCC
Q 023642 195 IVDVGSGTMESLA-NVTEI----HDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL-EANKLSLRILAH 268 (279)
Q Consensus 195 i~d~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~-~~~~~~~~~~~h 268 (279)
+.|++........ +.... ...-.|+. --..|..+.|+++|+++++-.. -+|++||+ ...+++.+++.|
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffse-----iIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSE-----IISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHH-----HhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence 9999854331111 11000 00001111 1136889999999999987543 58999999 567888888877
Q ss_pred C
Q 023642 269 T 269 (279)
Q Consensus 269 ~ 269 (279)
.
T Consensus 314 ~ 314 (433)
T KOG1354|consen 314 E 314 (433)
T ss_pred H
Confidence 5
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.2e-08 Score=79.99 Aligned_cols=86 Identities=17% Similarity=0.176 Sum_probs=72.8
Q ss_pred CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 116 ~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
....+.||-+.++.++|+||+++++++..|.+|++-.....-.+.. .+.+|+..|..+++-++ +.|++++.|+++++
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ies--fclGH~eFVS~isl~~~-~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIES--FCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL 219 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhh--hccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence 3455789999999999999999999999999999988776544433 24689999999999765 45899999999999
Q ss_pred EECCCCcee
Q 023642 196 VDVGSGTME 204 (279)
Q Consensus 196 ~d~~~~~~~ 204 (279)
||+++|+..
T Consensus 220 Wd~~sgk~L 228 (390)
T KOG3914|consen 220 WDITSGKLL 228 (390)
T ss_pred EecccCCcc
Confidence 999999874
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-07 Score=76.36 Aligned_cols=83 Identities=10% Similarity=0.118 Sum_probs=70.9
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 198 (279)
.+.+|.+.+.+++|.|....|.+|..|..+.+||+...+-.. ....+|...|..+...+--+.+++++.||.|-+||.
T Consensus 192 ~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~--~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 192 TFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA--YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred EEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee--eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEec
Confidence 478999999999999999999999999999999997543322 345688888999998888899999999999999998
Q ss_pred CCCce
Q 023642 199 GSGTM 203 (279)
Q Consensus 199 ~~~~~ 203 (279)
.....
T Consensus 270 n~~r~ 274 (404)
T KOG1409|consen 270 NVKRV 274 (404)
T ss_pred cceee
Confidence 76544
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-07 Score=73.22 Aligned_cols=96 Identities=13% Similarity=0.104 Sum_probs=71.6
Q ss_pred cceEeeeeecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC-CC
Q 023642 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQ 181 (279)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~ 181 (279)
+....|.+.|......-..-.+.|.+++-+| +...++.|+.||.+-+||.+...... ..+..|+.+++.+-|+| ++
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~--S~l~ahk~~i~eV~FHpk~p 236 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV--SLLKAHKAEIWEVHFHPKNP 236 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchH--HHHHHhhhhhhheeccCCCc
Confidence 3445565555443322222334499999999 55677889999999999998774332 24578999999999999 66
Q ss_pred CEEEEEeCCCeEEEEECCCC
Q 023642 182 RHLVYASMSPIVHIVDVGSG 201 (279)
Q Consensus 182 ~~l~~~~~d~~i~i~d~~~~ 201 (279)
..|++++.||.+..||..+.
T Consensus 237 ~~Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 237 EHLFTCSEDGSLWHWDASTT 256 (319)
T ss_pred hheeEecCCCcEEEEcCCCc
Confidence 78999999999999998863
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=53.44 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=32.0
Q ss_pred eccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
.+.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3579999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.1e-07 Score=71.98 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=66.9
Q ss_pred CCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCC-eEEeeeeeccCCCcceEEEEECC-CCCEEEEEeCCCe
Q 023642 116 GPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPI 192 (279)
Q Consensus 116 ~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~ 192 (279)
..+..+.|.-+.....|+. +.+++.+|+.|+.+..||++.. +.+.. ..+-|...|.++.-+| .+.+|++|+.|-.
T Consensus 157 ~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~--n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~ 234 (339)
T KOG0280|consen 157 KVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH--NSKVHTSGVVSIYSSPPKPTYIATGSYDEC 234 (339)
T ss_pred ecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee--cceeeecceEEEecCCCCCceEEEeccccc
Confidence 3345788999999999986 5678899999999999999833 33222 2356777899999887 5778999999999
Q ss_pred EEEEECCC
Q 023642 193 VHIVDVGS 200 (279)
Q Consensus 193 i~i~d~~~ 200 (279)
|++||.++
T Consensus 235 i~~~DtRn 242 (339)
T KOG0280|consen 235 IRVLDTRN 242 (339)
T ss_pred eeeeehhc
Confidence 99999995
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-07 Score=90.59 Aligned_cols=146 Identities=11% Similarity=0.136 Sum_probs=107.5
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~ 199 (279)
+..+-..|.++.=+|...+.++|+.||.|++|....++.+...... + ...|+.+.|+-+|+-+..+..||.+.+|...
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g-~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-G-NSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-C-cchhhhhhhcccCCceeeeccCCceeecccC
Confidence 4555677888888898899999999999999999888766543332 2 2689999999999999999999999999886
Q ss_pred CCceeeeeccccccceeEEeeCCC---------------------------CCccccEEEEEEecCCCEEEEecCCCeEE
Q 023642 200 SGTMESLANVTEIHDGLDFSAADD---------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~ 252 (279)
........-.......+.|-+..- ..|.+.++++++-|..+.|++|+.+|.|+
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 322111111111111112221100 45888999999999999999999999999
Q ss_pred EEECCCCeEEEEEeC
Q 023642 253 VYDLEANKLSLRILA 267 (279)
Q Consensus 253 vwd~~~~~~~~~~~~ 267 (279)
+||++..+.+++++.
T Consensus 2362 l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA 2376 (2439)
T ss_pred EeehHHHHHHHHhhh
Confidence 999998877766653
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.6e-06 Score=67.10 Aligned_cols=143 Identities=14% Similarity=0.131 Sum_probs=90.2
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEe-------------------------------eee-----------
Q 023642 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ-------------------------------KDI----------- 163 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~-------------------------------~~~----------- 163 (279)
.-.-++||||+.+||.+...|+|+++|+....... ...
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 34668999999999999999999999987421100 000
Q ss_pred -e---------------c-cCCCcceEEEEECCCCCEEEEEeC----CC-------eEEEEECCCCceeeee--cccccc
Q 023642 164 -L---------------A-KSLRWTVTDTSLSPDQRHLVYASM----SP-------IVHIVDVGSGTMESLA--NVTEIH 213 (279)
Q Consensus 164 -~---------------~-~~~~~~v~~~~~sp~~~~l~~~~~----d~-------~i~i~d~~~~~~~~~~--~~~~~~ 213 (279)
. + ..+...|.++.++|.-++|+.|+. ++ =+.-|.+-++..-... ......
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~ 204 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI 204 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence 0 0 012336888889998888776652 11 1556666554432111 100000
Q ss_pred c------------ee-EEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCc
Q 023642 214 D------------GL-DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 214 ~------------~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~ 270 (279)
. .. .|+... .....|..|..||||+.||+...+|.|.+|++.+-+....+..+.+
T Consensus 205 ~~~~~~~~~~~~~~~~~fs~~~--~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 205 TASSKRRGLLRIPSFKFFSRQG--QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred cccccccceeeccceeeeeccc--cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 0 00 111111 1235799999999999999999999999999998877777765443
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.2e-06 Score=74.20 Aligned_cols=134 Identities=16% Similarity=0.107 Sum_probs=101.2
Q ss_pred cceEeeeeecCCCCcee--eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCC
Q 023642 104 CCHMLSRYLPVNGPWPV--DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (279)
Q Consensus 104 ~~~~~~~~~~~~~~~~l--~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 181 (279)
+.+..+.....+-.+.+ ..|.+.|.++.++.+-..|.+++.|+++..|+...+..... .......+.+++.+|||
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~---~~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRI---WKEQKPLVSSLCISPDG 156 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeee---eccCCCccceEEEcCCC
Confidence 33444444444433444 46999999999999999999999999999999998865544 34455578999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-----CCEEEEec-CCCeEEEEE
Q 023642 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-----GRELVAGS-SDDCIYVYD 255 (279)
Q Consensus 182 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----g~~l~t~s-~d~~i~vwd 255 (279)
..+++++ ++|++||+++++.... |. ||.+.|.+++|..+ |.+++++. .+.-+.+|-
T Consensus 157 ~~l~~as--~~ik~~~~~~kevv~~-----------ft-----gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 157 KILLTAS--RQIKVLDIETKEVVIT-----------FT-----GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred CEEEecc--ceEEEEEccCceEEEE-----------ec-----CCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 9999887 6899999999987532 33 36779999999877 77776543 455678886
Q ss_pred CCC
Q 023642 256 LEA 258 (279)
Q Consensus 256 ~~~ 258 (279)
++.
T Consensus 219 v~~ 221 (541)
T KOG4547|consen 219 VEK 221 (541)
T ss_pred EEc
Confidence 653
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-06 Score=75.97 Aligned_cols=139 Identities=17% Similarity=0.234 Sum_probs=95.0
Q ss_pred EEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeee
Q 023642 128 YVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (279)
Q Consensus 128 ~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~ 206 (279)
..++++. ...+++.| ....|.-++++.|..+..+ ....+.++++..+|-..+|++|+.+|.|-.||.+.......
T Consensus 137 RDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~---~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~ 212 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPF---ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGT 212 (703)
T ss_pred ccccccCCCccEEEee-cCcceEEEEcccccccccc---ccccccceeeeecCccceEEecccCceEEEecchhhhhhee
Confidence 4455553 44444444 4457888899999776643 33346799999999999999999999999999998765433
Q ss_pred eccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe-CCCcceeEE
Q 023642 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTVNIALW 275 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~v 275 (279)
........ .+........|++++|+.+|-.+++|..+|.|.|||+++.+++..-. +..-+|..+
T Consensus 213 l~~~~~v~-----s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l 277 (703)
T KOG2321|consen 213 LDAASSVN-----SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKL 277 (703)
T ss_pred eecccccC-----CCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeee
Confidence 32221111 01011123359999999999999999999999999999988765433 233344443
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-06 Score=76.59 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=80.3
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~ 201 (279)
.....|.+++++|+...|+.|+.||.|.+||..++..... ...-.++.++|||+|..+++|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-----ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-----KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-----eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 5678999999999999999999999999999987743322 22335788999999999999999999999998755
Q ss_pred ceeeeecccc--ccceeEEeeCCCCCccccEEEEEEecCC
Q 023642 202 TMESLANVTE--IHDGLDFSAADDGGYSFGIFSLKFSTDG 239 (279)
Q Consensus 202 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~sp~g 239 (279)
.........+ ....+.++.+-. +...+..+.|++..
T Consensus 332 pi~~qLlsEd~~P~~~L~Ls~yf~--~~~~L~~iqW~~~~ 369 (545)
T PF11768_consen 332 PIKMQLLSEDATPKSTLQLSKYFR--VSSSLVHIQWAPAP 369 (545)
T ss_pred ccceeeccccCCCccEEeeehhcc--CcchhheeEeccCC
Confidence 4422211111 122334444433 45567788888543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2e-05 Score=68.96 Aligned_cols=126 Identities=14% Similarity=0.114 Sum_probs=82.5
Q ss_pred CCceeeCCCCCeEEEEECCCCCE-EEEEeC---CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe---
Q 023642 116 GPWPVDQTTSRAYVSQFSADGSL-FVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS--- 188 (279)
Q Consensus 116 ~~~~l~~h~~~V~~~~~spd~~~-l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--- 188 (279)
.+..+.... ......|+|||+. ++..+. +..|.++|+.+++.... ....+......|+|||+.|+...
T Consensus 180 ~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l----t~~~g~~~~~~~SPDG~~la~~~~~~ 254 (419)
T PRK04043 180 YQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI----ASSQGMLVVSDVSKDGSKLLLTMAPK 254 (419)
T ss_pred ceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE----ecCCCcEEeeEECCCCCEEEEEEccC
Confidence 344444443 7888999999985 654433 35799999988854332 22344566788999998776443
Q ss_pred CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CC--eEEEEECCCCeEEE
Q 023642 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DD--CIYVYDLEANKLSL 263 (279)
Q Consensus 189 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~--~i~vwd~~~~~~~~ 263 (279)
.+..|.++|+.++....+.... .......|+|||+.|+..+. .+ .|++.|+.+++..+
T Consensus 255 g~~~Iy~~dl~~g~~~~LT~~~-----------------~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r 315 (419)
T PRK04043 255 GQPDIYLYDTNTKTLTQITNYP-----------------GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ 315 (419)
T ss_pred CCcEEEEEECCCCcEEEcccCC-----------------CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe
Confidence 2457888899888754433211 11234579999998776553 22 68999998876633
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.7e-05 Score=65.06 Aligned_cols=162 Identities=20% Similarity=0.254 Sum_probs=95.6
Q ss_pred cCccCCCCee--e--ccccceEeeeeecCCCCc----ee-eCCCCCeEEEEECCCCCEEEEE-eCCCcEEEEEcC--CCe
Q 023642 90 EGNYSGRGRF--S--AADCCHMLSRYLPVNGPW----PV-DQTTSRAYVSQFSADGSLFVAG-FQASQIRIYDVE--RGW 157 (279)
Q Consensus 90 ~~~~~~~~~~--~--~~d~~~~~~~~~~~~~~~----~l-~~h~~~V~~~~~spd~~~l~s~-~~d~~i~iwd~~--~~~ 157 (279)
...+.+++++ . -..+.+.++++....... .+ ......-.-++|+|+++++... -.+++|.++++. .+.
T Consensus 148 ~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 148 QVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS 227 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred eEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc
Confidence 3456777664 1 123445555554433221 11 2334567889999999988655 456789999988 442
Q ss_pred E--Eeeeeec-cCC--CcceEEEEECCCCCEEEEEe-CCCeEEEEECC--CCceeeeeccccccceeEEeeCCCCCcccc
Q 023642 158 K--IQKDILA-KSL--RWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVG--SGTMESLANVTEIHDGLDFSAADDGGYSFG 229 (279)
Q Consensus 158 ~--~~~~~~~-~~~--~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (279)
. +...... .+. ......++++|||++|+++. ....|.+|++. ++....... +...+. .
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~---------~~~~G~-----~ 293 (345)
T PF10282_consen 228 LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT---------VPTGGK-----F 293 (345)
T ss_dssp EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE---------EEESSS-----S
T ss_pred eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE---------EeCCCC-----C
Confidence 2 1111111 111 12578999999999987766 56789999983 345433221 111111 5
Q ss_pred EEEEEEecCCCEEEEec-CCCeEEEEEC--CCCeEEEEE
Q 023642 230 IFSLKFSTDGRELVAGS-SDDCIYVYDL--EANKLSLRI 265 (279)
Q Consensus 230 v~~~~~sp~g~~l~t~s-~d~~i~vwd~--~~~~~~~~~ 265 (279)
...++++|+|++|+++. .++.|.+|++ .+|.....-
T Consensus 294 Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 294 PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 78999999999998876 4668999876 566654433
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.6e-07 Score=77.17 Aligned_cols=153 Identities=16% Similarity=0.086 Sum_probs=111.5
Q ss_pred eccccceEeeeeecCC-------CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcce
Q 023642 100 SAADCCHMLSRYLPVN-------GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV 172 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~-------~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 172 (279)
.+.|+++.+|.+.+.. .+++...|..+|.++.|-.+.+.++++ |+-|.+||.-.+..+........| +.+
T Consensus 753 ASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~ 829 (1034)
T KOG4190|consen 753 ASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAG 829 (1034)
T ss_pred ccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCccc-CCC
Confidence 4679999999988743 245678999999999999998888755 789999999887665543322222 234
Q ss_pred EEEEECCC--CCE-EEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC
Q 023642 173 TDTSLSPD--QRH-LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (279)
Q Consensus 173 ~~~~~sp~--~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~ 249 (279)
..+..-|+ ... ++.++...+|+++|.+.++..+-.+..... +-...+.+++..|.|++++.+-..|
T Consensus 830 ~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~-----------~Pna~~R~iaVa~~GN~lAa~LSnG 898 (1034)
T KOG4190|consen 830 GNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP-----------GPNALTRAIAVADKGNKLAAALSNG 898 (1034)
T ss_pred ceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCC-----------CCchheeEEEeccCcchhhHHhcCC
Confidence 44444453 333 344578889999999998875544332111 1224688999999999999999999
Q ss_pred eEEEEECCCCeEEEEEe
Q 023642 250 CIYVYDLEANKLSLRIL 266 (279)
Q Consensus 250 ~i~vwd~~~~~~~~~~~ 266 (279)
+|.+.|.++|+.+-.++
T Consensus 899 ci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 899 CIAILDARNGKVINSWR 915 (1034)
T ss_pred cEEEEecCCCceeccCC
Confidence 99999999999776554
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.6e-06 Score=72.71 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=81.9
Q ss_pred EEEEECC-CCCEEEEE----eCCCc----EEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 023642 128 YVSQFSA-DGSLFVAG----FQASQ----IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 128 ~~~~~sp-d~~~l~s~----~~d~~----i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 198 (279)
.++.||- +...+.+- +.+|. -++|++..++........-.....|.+++++|+...++.|+.||.|.+||.
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 5566765 44445443 33443 456777665432222223356668999999999999999999999999999
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCe
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~ 260 (279)
..+...... ....++.++|+|+|.++++|+.-|.+.+||+.-+.
T Consensus 289 ~~~~t~~~k------------------a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 289 TRGVTLLAK------------------AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred CCCeeeeee------------------ecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 876543221 11267889999999999999999999999997544
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.8e-05 Score=65.01 Aligned_cols=124 Identities=19% Similarity=0.329 Sum_probs=86.9
Q ss_pred eEEEEECCCCCEEEEEeC-CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCC--Cc
Q 023642 127 AYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGS--GT 202 (279)
Q Consensus 127 V~~~~~spd~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~--~~ 202 (279)
+-...+.|++++|++..- --+|.+|+++.|...........-....+.+.|+|++++..... .+++|-+|.... ++
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence 888999999999988743 23799999998754332222223345688999999999976555 688999999887 45
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CCeEEEEECCC
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEA 258 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~~i~vwd~~~ 258 (279)
...++.....+.. |.+. .+...+..+|||++|..+.+ ...|.+|.+..
T Consensus 227 ~~~lQ~i~tlP~d--F~g~------~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 227 FEELQTIDTLPED--FTGT------NWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred EEEeeeeccCccc--cCCC------CceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 4444443333322 3333 36788999999999988764 34788887754
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-05 Score=77.42 Aligned_cols=133 Identities=18% Similarity=0.137 Sum_probs=88.1
Q ss_pred CeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeEEeeee----------eccC--------CCcceEEEEECCCCCEEEE
Q 023642 126 RAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDI----------LAKS--------LRWTVTDTSLSPDQRHLVY 186 (279)
Q Consensus 126 ~V~~~~~spd~~~l-~s~~~d~~i~iwd~~~~~~~~~~~----------~~~~--------~~~~v~~~~~sp~~~~l~~ 186 (279)
....++|+|++..| ++-+.+++|++||+.++....... .+.. .-.....++++|+|..+++
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA 820 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA 820 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE
Confidence 45679999999854 555677899999998764211100 0000 0112468999999998888
Q ss_pred EeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeE
Q 023642 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (279)
Q Consensus 187 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~ 261 (279)
-..++.|++||..++....+..... .+.. .+....+.-.....++++++|+.+++-+.+++|++||+.+++.
T Consensus 821 Ds~N~rIrviD~~tg~v~tiaG~G~--~G~~-dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 821 DSYNHKIKKLDPATKRVTTLAGTGK--AGFK-DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCeEEEEeccCC--cCCC-CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 8899999999998877643322100 0000 0000011223577899999999988888899999999998764
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3e-05 Score=67.78 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=78.8
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEE-eCC--CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-C--
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAG-FQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P-- 191 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~-~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~-- 191 (279)
..+....+......|+|||+.++.. +.+ ..|.++|+.++.... +..+........|+|||+.|+..+.. +
T Consensus 226 ~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~----LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~ 301 (419)
T PRK04043 226 EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ----ITNYPGIDVNGNFVEDDKRIVFVSDRLGYP 301 (419)
T ss_pred EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE----cccCCCccCccEECCCCCEEEEEECCCCCc
Confidence 3455566667788999999877643 333 468888988775322 12222223456899999988766532 2
Q ss_pred eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC---------CeEEEEECCCCeE
Q 023642 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---------DCIYVYDLEANKL 261 (279)
Q Consensus 192 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d---------~~i~vwd~~~~~~ 261 (279)
.|.++|+.+++...+... + . ....|+|||++++..+.. ..|++.|+.++..
T Consensus 302 ~Iy~~dl~~g~~~rlt~~----------g--------~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 302 NIFMKKLNSGSVEQVVFH----------G--------K-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred eEEEEECCCCCeEeCccC----------C--------C-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 688889988776433210 0 1 124899999988865543 3688889887764
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-05 Score=68.06 Aligned_cols=109 Identities=23% Similarity=0.250 Sum_probs=84.7
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCC----eE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----IV 193 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----~i 193 (279)
..+...-+.|.++..+|||++++.+.....|.+.|++++..... -+...+-|+..+|||++++||.+--+| .|
T Consensus 395 kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i---dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~I 471 (668)
T COG4946 395 KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI---DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSI 471 (668)
T ss_pred EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe---cccccceeEEEEEcCCceeEEEecCcceeeeeE
Confidence 45677789999999999999999999999999999999954322 345566899999999999999887665 59
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
+++|+.+++........ +.=++-+|.||+++|..-+
T Consensus 472 klydm~~~Kiy~vTT~t-----------------a~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 472 KLYDMDGGKIYDVTTPT-----------------AYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEEecCCCeEEEecCCc-----------------ccccCcccCCCCcEEEEEe
Confidence 99999998874433211 1224567889999887544
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.9e-06 Score=69.88 Aligned_cols=111 Identities=22% Similarity=0.181 Sum_probs=81.3
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEE-EEeCCCeEEEEECCCCceeeeec
Q 023642 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESLAN 208 (279)
Q Consensus 130 ~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~ 208 (279)
..|||+|+++|+.++- ++.|-|..+-+..+.+ .+ -..|.-+.|..|..+++ ....|+.|.+|++...+..+...
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf-~c---ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF-LC---LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHH-HH---HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec
Confidence 6799999999999886 8889998876433321 11 22477788999887765 45678899999998776543322
Q ss_pred cccccceeEEeeCCCCCccccEEEEEEecCCCEEE-EecCCCeEEEEECCCCeE
Q 023642 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKL 261 (279)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-t~s~d~~i~vwd~~~~~~ 261 (279)
. ....+.+++|||||+.++ +..-+-.|.||.+.+.+.
T Consensus 89 e----------------g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 89 E----------------GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred c----------------CCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence 1 123788999999997765 455688999999987654
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.6e-05 Score=61.48 Aligned_cols=117 Identities=14% Similarity=0.246 Sum_probs=83.4
Q ss_pred EEEEECCCCCEEEEEeC-CCcEEEEEcCC-CeEEeeeeeccCCCcc----------eEEEEECCCCCEEEEEeC-CCeEE
Q 023642 128 YVSQFSADGSLFVAGFQ-ASQIRIYDVER-GWKIQKDILAKSLRWT----------VTDTSLSPDQRHLVYASM-SPIVH 194 (279)
Q Consensus 128 ~~~~~spd~~~l~s~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~----------v~~~~~sp~~~~l~~~~~-d~~i~ 194 (279)
..++++++|++|+++.. -|.|.++-+.. |... .......|.+. +....|.|++++|++++. --.|.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~-~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~ 170 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ-PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF 170 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccc-cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence 78999999999988854 47899998865 4222 11112233333 888999999999998873 34799
Q ss_pred EEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CCeEEEEECCC
Q 023642 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEA 258 (279)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~~i~vwd~~~ 258 (279)
+|++..|......... +.+ + ....-+.|+|++++.....+ +++|-+|....
T Consensus 171 ~y~~~dg~L~~~~~~~-------v~~-G-----~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 171 LYDLDDGKLTPADPAE-------VKP-G-----AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred EEEcccCccccccccc-------cCC-C-----CCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 9999987764332211 111 1 25678999999999887765 88999999876
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1e-06 Score=70.90 Aligned_cols=145 Identities=15% Similarity=0.189 Sum_probs=94.6
Q ss_pred eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC-----cceEEEEECCCC-CEEEEEeCCCeEE
Q 023642 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-----WTVTDTSLSPDQ-RHLVYASMSPIVH 194 (279)
Q Consensus 121 ~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~sp~~-~~l~~~~~d~~i~ 194 (279)
..|+-.++++.|+.|...++++. |-+|.+|+++-..-.-.+.....|. .-|++..|+|.. ..+...+..|.|+
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 57889999999999998888764 6899999987432211222233332 358899999964 5677788899999
Q ss_pred EEECCCCceeeeec-cc-cccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC-CeEEEEEeCCC
Q 023642 195 IVDVGSGTMESLAN-VT-EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRILAHT 269 (279)
Q Consensus 195 i~d~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~-~~~~~~~~~h~ 269 (279)
+-|++......... .. ....+.....- .+-...|..+.|+++|+++++-+. -+|++||+.. ..|+.+++-|.
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff--~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFF--EEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhH--HHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHH
Confidence 99998433211110 00 00011000000 011246889999999999987553 5899999985 45888887664
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.3e-05 Score=62.54 Aligned_cols=176 Identities=12% Similarity=0.110 Sum_probs=120.5
Q ss_pred eccccceEeeeeecCCCCc--eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-eEEeeeeeccCCCcceEEEE
Q 023642 100 SAADCCHMLSRYLPVNGPW--PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTS 176 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~--~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~ 176 (279)
.+.|+++.+|.-.+..+-+ +......+++++.+.++...|+.|-..|++.-+.+..- .+.........|...|..+-
T Consensus 42 ~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~i 121 (404)
T KOG1409|consen 42 VSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIV 121 (404)
T ss_pred ccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEE
Confidence 4678888888766654433 34456789999999999999999999999988876431 11111122457888999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCCCceeeee----cccccc--ceeEEeeCCC-------------------CCccccEE
Q 023642 177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLA----NVTEIH--DGLDFSAADD-------------------GGYSFGIF 231 (279)
Q Consensus 177 ~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~--~~~~~~~~~~-------------------~~~~~~v~ 231 (279)
|+-...++++.+.|..+.---.+.+....-. ...... -.+.|.++.. ++|.+.+.
T Consensus 122 f~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~ 201 (404)
T KOG1409|consen 122 FSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVT 201 (404)
T ss_pred ecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceE
Confidence 9988889999998876544444433321100 000000 0122332222 67889999
Q ss_pred EEEEecCCCEEEEecCCCeEEEEECCCCe-EEEEEeCCCcceeEE
Q 023642 232 SLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTVNIALW 275 (279)
Q Consensus 232 ~~~~sp~g~~l~t~s~d~~i~vwd~~~~~-~~~~~~~h~~~v~~v 275 (279)
+++|.|..+.|.+|..|..+.+||+..++ ....+.+|.+.|..+
T Consensus 202 ~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 202 CLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL 246 (404)
T ss_pred EEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence 99999999999999999999999997654 445667887776554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.3e-06 Score=73.03 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=83.8
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC-----CCEEEEEeCCCeEEEEECCCC-ceeee
Q 023642 133 SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-----QRHLVYASMSPIVHIVDVGSG-TMESL 206 (279)
Q Consensus 133 spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~~~~~d~~i~i~d~~~~-~~~~~ 206 (279)
.-+|.++++++.||+|.|-.+.+.+.... .....++.+++++|+ .+.+++|+..| +.++.-.-- .....
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~----~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v 154 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQ----YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV 154 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCcccee----EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce
Confidence 44799999999999999999988755433 244558999999998 56788998888 666643221 11111
Q ss_pred eccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCc
Q 023642 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~ 270 (279)
..+. ..+.|.+++|. |.++|.++.+| |+|||+.+++.+..++-...
T Consensus 155 ----------~l~~-----~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~ 200 (846)
T KOG2066|consen 155 ----------VLSE-----GEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQ 200 (846)
T ss_pred ----------eeec-----CccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCC
Confidence 1111 22489999997 88999998887 99999999988887765433
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1e-06 Score=71.79 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=97.5
Q ss_pred eccccceEeeeeecCCCCce--------eeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCe-EEeeeee-----
Q 023642 100 SAADCCHMLSRYLPVNGPWP--------VDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGW-KIQKDIL----- 164 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~--------l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~----- 164 (279)
++.|-.+-+|++.-..+... ....+.-|++..|+| ..+.|+..+..|+|++-|++... |......
T Consensus 181 SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 181 SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 34444666787765544332 233467789999999 56788888889999999998431 1110000
Q ss_pred -------ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc-e-eeeeccccccceeEEeeCCCCCccccEEEEEE
Q 023642 165 -------AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT-M-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKF 235 (279)
Q Consensus 165 -------~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 235 (279)
+.+--..|.++.|+++|+|+++-+. -+|++||+.... . ...+....... .++.-....--..-+.++|
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~--kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRS--KLCSLYENDAIFDKFECSW 337 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHH--HHHHHhhccchhheeEEEE
Confidence 1122236899999999999998655 489999995432 2 11111100000 0000000001123467899
Q ss_pred ecCCCEEEEecCCCeEEEEECCCCe
Q 023642 236 STDGRELVAGSSDDCIYVYDLEANK 260 (279)
Q Consensus 236 sp~g~~l~t~s~d~~i~vwd~~~~~ 260 (279)
+-++.+++||+....++++++..|.
T Consensus 338 sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred cCCcceEecccccceEEEecCCCCc
Confidence 9999999999999999999976543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.4e-05 Score=63.62 Aligned_cols=117 Identities=20% Similarity=0.215 Sum_probs=82.5
Q ss_pred EECC-CCCEEEEEeCCCcEEEEEcCCCe-----EEeeeeecc-----CCCcceEEEEECCCCCEEEEEe----------C
Q 023642 131 QFSA-DGSLFVAGFQASQIRIYDVERGW-----KIQKDILAK-----SLRWTVTDTSLSPDQRHLVYAS----------M 189 (279)
Q Consensus 131 ~~sp-d~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~~~~----------~ 189 (279)
.|++ +|+++..... |+|.+.|+.... ..... ... -..+...-++++|+++.++... .
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~-~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAF-TEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeec-cccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCC
Confidence 3455 8888877777 999999965431 11111 011 0122344599999999888743 2
Q ss_pred CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC-EEEEec-CCCeEEEEECCCCeEEEEEe
Q 023642 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGS-SDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 190 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~t~s-~d~~i~vwd~~~~~~~~~~~ 266 (279)
.+.|.++|..+++........ ..+..++|+||++ +|++.. .++.|.++|..+++.+.++.
T Consensus 278 ~~~V~ViD~~t~kvi~~i~vG-----------------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLRKIELG-----------------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCEEEEEECCCCeEEEEEeCC-----------------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 257999999998876543321 1688999999999 777666 57889999999999999984
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00027 Score=60.37 Aligned_cols=126 Identities=21% Similarity=0.326 Sum_probs=79.8
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCe--EEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEECC
Q 023642 124 TSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVG 199 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~-d~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~ 199 (279)
.....++.|+||++++++... ...|.+|+++... ...............+.++|+|++++++... .++.|.+|++.
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 456788999999998877643 3489999997654 2111111123444688999999999876554 67889999888
Q ss_pred --CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CCeEEEEECC
Q 023642 200 --SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLE 257 (279)
Q Consensus 200 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~~i~vwd~~ 257 (279)
++.............. +. .......++++|||++|+++.. +++|.+|++.
T Consensus 223 ~~~g~~~~~~~~~~~~~~--~~------~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPEG--FT------GENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp TTTTEEEEEEEEESCETT--SC------SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred ccCCceeEEEEeeecccc--cc------ccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 4543322222111110 00 1126788999999999887664 6689999993
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.8e-05 Score=74.25 Aligned_cols=157 Identities=14% Similarity=0.058 Sum_probs=101.4
Q ss_pred cccceEeeeeecCCCCceee--CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 102 ADCCHMLSRYLPVNGPWPVD--QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~~~~l~--~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.-+.+..|+.......|.++ --.+.|++++.+|.++++++|...|.+-+||++=+..+.. ....+..+++.+..+|
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~s--w~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILS--WEHPARAPIRHVWLCP 1248 (1431)
T ss_pred eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeec--ccCcccCCcceEEeec
Confidence 34445556665555445543 2358899999999999999999999999999997755543 2345557888888877
Q ss_pred CC---CEEEEEe--CCCeEEEEECCCCceeeeeccccccceeE-EeeCC--CCCccccEEEEEEecCCCEEEEecCCCeE
Q 023642 180 DQ---RHLVYAS--MSPIVHIVDVGSGTMESLANVTEIHDGLD-FSAAD--DGGYSFGIFSLKFSTDGRELVAGSSDDCI 251 (279)
Q Consensus 180 ~~---~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~v~~~~~sp~g~~l~t~s~d~~i 251 (279)
-. ...++++ ..+.+.+|++.+|.+............+. +.+.. .+.+.-......+..-+.++.+|+.|..|
T Consensus 1249 ~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1249 TYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred cCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccce
Confidence 43 4544443 57789999999998765544431211111 11111 01122122333344446688899999999
Q ss_pred EEEECCCCe
Q 023642 252 YVYDLEANK 260 (279)
Q Consensus 252 ~vwd~~~~~ 260 (279)
+.||....+
T Consensus 1329 R~wD~~~p~ 1337 (1431)
T KOG1240|consen 1329 RKWDPTRPE 1337 (1431)
T ss_pred eeccCCCcc
Confidence 999987644
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.7e-06 Score=83.70 Aligned_cols=142 Identities=14% Similarity=0.134 Sum_probs=103.7
Q ss_pred eccccceEeeeeecCCCCceee-CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-----eEEe-------------
Q 023642 100 SAADCCHMLSRYLPVNGPWPVD-QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-----WKIQ------------- 160 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~-----~~~~------------- 160 (279)
++.|+.+.+|.+-..+...+.. +-...|+.+.|+.+|+.+..+..||.+.+|.+... +|-.
T Consensus 2226 gs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~s~~ 2305 (2439)
T KOG1064|consen 2226 GSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIGSLL 2305 (2439)
T ss_pred cCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeeehhh
Confidence 5667778877766555554432 23388899999999998888888888888866421 0000
Q ss_pred ----------------------eeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEE
Q 023642 161 ----------------------KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDF 218 (279)
Q Consensus 161 ----------------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 218 (279)
.......|.+.++++++.|..+.|++|+.+|.|++||++..+.+
T Consensus 2306 ~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~-------------- 2371 (2439)
T KOG1064|consen 2306 ATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR-------------- 2371 (2439)
T ss_pred hccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH--------------
Confidence 00011467778999999999999999999999999999876653
Q ss_pred eeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 219 SAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 219 ~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
|..+. +. ...++++|+..|.|+||++..-..+.+++.
T Consensus 2372 -------h~~~~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2372 -------HTFQA----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred -------HHhhh----hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 32233 33 456889999999999999998877777764
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00022 Score=58.54 Aligned_cols=134 Identities=24% Similarity=0.248 Sum_probs=89.4
Q ss_pred EEECCCCCEEEEEeC-----CCcEEEEEcCCC-eEEeeeeeccCCCcceEEEEECCCCCEEEEEeC--------------
Q 023642 130 SQFSADGSLFVAGFQ-----ASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-------------- 189 (279)
Q Consensus 130 ~~~spd~~~l~s~~~-----d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-------------- 189 (279)
-.|||||++|++.-+ .|.|-|||...+ ..+. .+..|.-....+.+.|||+.|+.+..
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~---E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLN 132 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIG---EFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLN 132 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEe---EecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecC
Confidence 579999999988743 478999999943 3333 34556556788999999988877652
Q ss_pred ----CCeEEEEECCCCceeeeeccccc-----cceeEEeeCCC-------------------------------------
Q 023642 190 ----SPIVHIVDVGSGTMESLANVTEI-----HDGLDFSAADD------------------------------------- 223 (279)
Q Consensus 190 ----d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~------------------------------------- 223 (279)
+..+-+.|..+|+.......... ...+.+.+.+.
T Consensus 133 l~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~ 212 (305)
T PF07433_consen 133 LDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQW 212 (305)
T ss_pred hhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHH
Confidence 23466667788876443322111 11112222211
Q ss_pred CCccccEEEEEEecCCCEEEEec-CCCeEEEEECCCCeEEEEEe
Q 023642 224 GGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 224 ~~~~~~v~~~~~sp~g~~l~t~s-~d~~i~vwd~~~~~~~~~~~ 266 (279)
....+.+-+|++++++.+++..+ ..+.+.+||..+++.+....
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence 12346788999999998876555 67899999999998876654
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.4e-05 Score=59.62 Aligned_cols=125 Identities=12% Similarity=-0.011 Sum_probs=85.2
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeE
Q 023642 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLD 217 (279)
Q Consensus 138 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 217 (279)
.+..++.|.++++.+++-+..... ..... -.+.+++++||++++++.+....|..|.+......... . .
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~-~h~~~--~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~-------~ 198 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFA-VHNQN--LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-I-------Y 198 (344)
T ss_pred ceeeccCCcceeEEEEecCcccce-eeccc--cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-e-------E
Confidence 466778888999998875532221 11111 23789999999999999999999999988764432111 1 1
Q ss_pred EeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC-eEEEEE----eCCCcceeEEEee
Q 023642 218 FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRI----LAHTVNIALWITC 278 (279)
Q Consensus 218 ~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~-~~~~~~----~~h~~~v~~v~~~ 278 (279)
..+..+ .-.+.+|+.....+|++..|+++.|||++.- .++... +.|.+.++.+-.+
T Consensus 199 ~a~t~D-----~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fs 259 (344)
T KOG4532|consen 199 EAPTSD-----HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFS 259 (344)
T ss_pred ecccCC-----CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEec
Confidence 112222 4478899999999999999999999999863 333322 3577777766443
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-05 Score=71.72 Aligned_cols=159 Identities=16% Similarity=0.193 Sum_probs=106.1
Q ss_pred ccccceEeeeeecCCCCceeeCCC-CCeEEEEECCCCC---EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEE
Q 023642 101 AADCCHMLSRYLPVNGPWPVDQTT-SRAYVSQFSADGS---LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~l~~h~-~~V~~~~~spd~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 176 (279)
+..+.+++--..|...+..+...+ =.|-.+.|+|... ++++.+. ..-.+|++.....-.....+.+|...|+++-
T Consensus 43 sr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~~aIef~lhghsraitd~n 121 (1081)
T KOG0309|consen 43 SRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSSNAIEFVLHGHSRAITDIN 121 (1081)
T ss_pred hhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCc-chhhhhhhhcCCccceEEEEecCccceeccc
Confidence 344444444344444444443322 3367788888443 4555554 4556899875433333345689999999999
Q ss_pred ECCCC-CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 177 LSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 177 ~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
|+|.. ..+++++.|..+..||++........ +.. .......++|+.-...+...+..+.|++||
T Consensus 122 ~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys----------~~~-----w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 122 FNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS----------TSS-----WRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred cCCCCCcceeeccccccceeeeccCCCcceee----------eec-----ccccCceeeecccCcchhhhccCCceEEEe
Confidence 99965 46899999999999999986642111 111 122567789987666666667788899999
Q ss_pred CCCC-eEEEEEeCCCcceeEE
Q 023642 256 LEAN-KLSLRILAHTVNIALW 275 (279)
Q Consensus 256 ~~~~-~~~~~~~~h~~~v~~v 275 (279)
.+.| .++..+++|...|+.+
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~ 207 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSI 207 (1081)
T ss_pred ccCCCcceEEecccceeeehH
Confidence 9875 5889999998888764
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.5e-06 Score=71.24 Aligned_cols=131 Identities=11% Similarity=0.152 Sum_probs=90.1
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-eEE---eeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKI---QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~-~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
+.||+..|..++--.+.+-+++++.|++|++|.++.. ... ........|+.+|.++.|-.+-++++++ |+-+++
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHl 808 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHL 808 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCccee
Confidence 6899999999987778888999999999999998642 111 1123467899999999999998888775 678999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC--CCEEEEe-cCCCeEEEEECCCCeEEEEEe
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAG-SSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~t~-s~d~~i~vwd~~~~~~~~~~~ 266 (279)
||.--++...... ... ..+.+..+..-|+ ...++.+ +...+|+++|.+.++....++
T Consensus 809 WDPFigr~Laq~~--dap------------k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k 868 (1034)
T KOG4190|consen 809 WDPFIGRLLAQME--DAP------------KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELK 868 (1034)
T ss_pred ecccccchhHhhh--cCc------------ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEE
Confidence 9987666532111 100 0112333333343 3344444 568899999999987665554
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.1e-06 Score=63.97 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=57.3
Q ss_pred ceEEEEECCCCC-EEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEecCC
Q 023642 171 TVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSD 248 (279)
Q Consensus 171 ~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s~d 248 (279)
.|++++-+|..+ .+++|+.||.+-+||.+........ . ..|...++.+.|+|. +..|+++++|
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~--l-------------~ahk~~i~eV~FHpk~p~~Lft~sed 245 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL--L-------------KAHKAEIWEVHFHPKNPEHLFTCSED 245 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH--H-------------HHhhhhhhheeccCCCchheeEecCC
Confidence 488999999654 5678889999999999987432111 0 116679999999995 7789999999
Q ss_pred CeEEEEECCC
Q 023642 249 DCIYVYDLEA 258 (279)
Q Consensus 249 ~~i~vwd~~~ 258 (279)
|.+..||..+
T Consensus 246 Gslw~wdas~ 255 (319)
T KOG4714|consen 246 GSLWHWDAST 255 (319)
T ss_pred CcEEEEcCCC
Confidence 9999999864
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00032 Score=59.42 Aligned_cols=108 Identities=17% Similarity=0.096 Sum_probs=76.4
Q ss_pred CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC----------CCeEEEEECCCCceeeeeccccccce
Q 023642 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----------SPIVHIVDVGSGTMESLANVTEIHDG 215 (279)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~ 215 (279)
++|.+.|..+.+.+..+..... -..+ ++||++.|+.+.. +..|.+||..+.+...-......+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~----P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~- 100 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL----PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR- 100 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC----Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch-
Confidence 8999999999877665433222 2234 9999999876665 7899999999988754333211100
Q ss_pred eEEeeCCCCCccccEEEEEEecCCCEEEEec-C-CCeEEEEECCCCeEEEEEeC
Q 023642 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS-S-DDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s-~-d~~i~vwd~~~~~~~~~~~~ 267 (279)
+. .-.....++++|||++|+... . +..|.+.|+.+++.+.++.-
T Consensus 101 --~~------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 101 --FL------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred --hh------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 00 001234688999999998766 3 68999999999999998874
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00029 Score=68.50 Aligned_cols=135 Identities=20% Similarity=0.196 Sum_probs=83.5
Q ss_pred EEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeee-----ccC------CCcceEEEEECCCCCEE-EEEeCCCeEE
Q 023642 128 YVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDIL-----AKS------LRWTVTDTSLSPDQRHL-VYASMSPIVH 194 (279)
Q Consensus 128 ~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~------~~~~v~~~~~sp~~~~l-~~~~~d~~i~ 194 (279)
..++|+| ++.++++.+.+++|++||..++........ ..+ .-.....++++|++..| ++-+.++.|+
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir 765 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR 765 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence 5789999 566667778889999999987743211000 000 11235679999999855 4555678999
Q ss_pred EEECCCCceeeeeccccc--cceeEEeeCCC---CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEE
Q 023642 195 IVDVGSGTMESLANVTEI--HDGLDFSAADD---GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (279)
Q Consensus 195 i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~ 262 (279)
+||+.++........... .....|..... ...-.....++|+++|..+++-+.++.|++||..++...
T Consensus 766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 999987664221100000 00000100000 001123468999999998888888999999999877654
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.5e-06 Score=67.25 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=83.2
Q ss_pred EEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEe
Q 023642 140 VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFS 219 (279)
Q Consensus 140 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 219 (279)
++.+-+..|-+-|+.+|.... + ...+.|.++.|...+++++.|..+|.|..+|++.+..-....... .+
T Consensus 228 fs~G~sqqv~L~nvetg~~qs----f-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-----ly- 296 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS----F-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-----LY- 296 (425)
T ss_pred ecccccceeEEEEeecccccc----c-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE-----EE-
Confidence 455566788888888873321 2 245579999999999999999999999999998762210000000 01
Q ss_pred eCCCCCccccEEEEEEec-CCCEEEEecCCCeEEEEECCCCeE---EEEEeCCCc
Q 023642 220 AADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKL---SLRILAHTV 270 (279)
Q Consensus 220 ~~~~~~~~~~v~~~~~sp-~g~~l~t~s~d~~i~vwd~~~~~~---~~~~~~h~~ 270 (279)
|.+.|+++..-. ++++|++.+.+|+|++||.+.-++ +.+++||..
T Consensus 297 ------h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN 345 (425)
T KOG2695|consen 297 ------HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN 345 (425)
T ss_pred ------cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc
Confidence 445788877655 688999999999999999987666 999999965
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.3e-05 Score=67.00 Aligned_cols=124 Identities=15% Similarity=0.193 Sum_probs=94.4
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
+...|.--+++..+.+++.|+.-|.+.+|+-..+..... ...+..+.+..+..+++..++|.|+..|.|.++.+..+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~--~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL--KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc--cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 455666667888899999999999999999887754332 122244457778899999999999999999999887744
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
..... +....++.|...|++++|++++..|++|...|.|..-.+.+
T Consensus 110 p~~~~----------~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDLD----------YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcce----------eeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 32222 22222233777999999999999999999999998888776
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00011 Score=67.37 Aligned_cols=123 Identities=14% Similarity=0.183 Sum_probs=86.2
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC---------CCeEEEE
Q 023642 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---------SPIVHIV 196 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---------d~~i~i~ 196 (279)
.|.-+.- +++.+.+|...|+|.+-|..+.+.++. +..|.+.|.++.. .|+.|++|+. |.-|++|
T Consensus 179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht---~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVY 251 (1118)
T KOG1275|consen 179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHT---FDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVY 251 (1118)
T ss_pred ceEEEEe--cCcEEEeecccceEEeecCCcCceeee---eeccccceeeeec--cCCeEEEeecccccccccccchhhhh
Confidence 4555544 678999999999999999999887776 5789888876554 7899999884 5669999
Q ss_pred ECCCCceeeeeccccccc----------eeEE-eeCCC-------------------CCccccEEEEEEecCCCEEEEec
Q 023642 197 DVGSGTMESLANVTEIHD----------GLDF-SAADD-------------------GGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~----------~~~~-~~~~~-------------------~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
|+++-+......+..... .+.. +..+. ......+..+.+|++|..++.|.
T Consensus 252 DLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd 331 (1118)
T KOG1275|consen 252 DLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGD 331 (1118)
T ss_pred hhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEec
Confidence 998765432222111110 0000 00000 11234588999999999999999
Q ss_pred CCCeEEEEE
Q 023642 247 SDDCIYVYD 255 (279)
Q Consensus 247 ~d~~i~vwd 255 (279)
.+|.|.+|-
T Consensus 332 ~~g~v~~wa 340 (1118)
T KOG1275|consen 332 HEGHVNLWA 340 (1118)
T ss_pred ccCcEeeec
Confidence 999999997
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.8e-05 Score=70.80 Aligned_cols=143 Identities=10% Similarity=0.134 Sum_probs=100.1
Q ss_pred eccccceEeeeeecCCCC---ceeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEE
Q 023642 100 SAADCCHMLSRYLPVNGP---WPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT 175 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~---~~l~~h~~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 175 (279)
+-.....++|++...... ..+-+|...|+.+-|+|+. ..+++++.|-.+..||+++.....-. ...-......+
T Consensus 87 sts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys--~~~w~s~asqV 164 (1081)
T KOG0309|consen 87 STSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS--TSSWRSAASQV 164 (1081)
T ss_pred ecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee--eecccccCcee
Confidence 444556677877654433 3478999999999999955 57799999999999999986432221 22223357789
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEecCCCeEEEE
Q 023642 176 SLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVY 254 (279)
Q Consensus 176 ~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s~d~~i~vw 254 (279)
+|+--...+.+.+..+.|++||++.|.-..... ++|...|+.+.|..- ...+.+++.|++|++|
T Consensus 165 kwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~---------------K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 165 KWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSL---------------KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred eecccCcchhhhccCCceEEEeccCCCcceEEe---------------cccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 998755555555667789999999876422111 125557888888653 3456788999999999
Q ss_pred ECCCC
Q 023642 255 DLEAN 259 (279)
Q Consensus 255 d~~~~ 259 (279)
|....
T Consensus 230 ~y~kS 234 (1081)
T KOG0309|consen 230 DYSKS 234 (1081)
T ss_pred ccccc
Confidence 98643
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0001 Score=65.97 Aligned_cols=120 Identities=8% Similarity=0.124 Sum_probs=92.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE------------EeeeeeccCCCcceEEEEECCCCCEEEEEeCCCe
Q 023642 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK------------IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~------------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 192 (279)
....+++|+....+++.|+.||.+++-.+.+... +..-..+.+|...|..+.|....+.|-+...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 5678999999999999999999999998765311 1111235689999999999998889999999999
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
|.+|-+-.|....-... +...+.|.+++|..||+.+...-.||.|.|=.+..
T Consensus 95 IiVWmlykgsW~EEMiN--------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG 146 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMIN--------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG 146 (1189)
T ss_pred EEEEeeecccHHHHHhh--------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc
Confidence 99999887765211100 11445899999999999998888888777666653
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.4e-05 Score=67.50 Aligned_cols=143 Identities=12% Similarity=0.066 Sum_probs=98.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC-CCeEEEEECCCC
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSG 201 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~i~d~~~~ 201 (279)
|.+.|+-+... -.+++++++-||.++.|--..-.-+.-...++.|.+.|.+++.+-++.++++.+. |+.++++|+.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 55556555443 3578999999999999986542223333456788889999999999999999777 999999998765
Q ss_pred ceeeeeccccccceeEEe-eCC-----------------------C----------------------------------
Q 023642 202 TMESLANVTEIHDGLDFS-AAD-----------------------D---------------------------------- 223 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~-~~~-----------------------~---------------------------------- 223 (279)
......+....+.-+.+. +.+ +
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence 543222222211111000 000 0
Q ss_pred -------------------------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 224 -------------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 224 -------------------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
........++.|+|+|..+.+-+.|..|++++.++|+.++.+.
T Consensus 167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 1123456788999999999998899999999999998887775
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00015 Score=63.03 Aligned_cols=112 Identities=19% Similarity=0.212 Sum_probs=79.2
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC-----------CCeEEE
Q 023642 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----------SPIVHI 195 (279)
Q Consensus 127 V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----------d~~i~i 195 (279)
-+.+.|||-|.+|++-..-| |.+|-=.+-..+++ -.|.+ |.-+.|||..+||++-+. ...++|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~R----F~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQR----FYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHh----ccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 36689999999999998865 78996544433333 24554 899999999999998763 257999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
||+++|............ .....-+.||.|++++|-... .+|.||+..+
T Consensus 287 WDI~tG~lkrsF~~~~~~-------------~~~WP~frWS~DdKy~Arm~~-~sisIyEtps 335 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSP-------------YLKWPIFRWSHDDKYFARMTG-NSISIYETPS 335 (698)
T ss_pred EEccccchhcceeccCCC-------------ccccceEEeccCCceeEEecc-ceEEEEecCc
Confidence 999999875433321110 012233689999999987665 5688888765
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0015 Score=52.44 Aligned_cols=73 Identities=23% Similarity=0.234 Sum_probs=50.6
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCC--eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 130 SQFSADGSLFVAGFQASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 130 ~~~spd~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
++.+++|++||.- +|..|.|-..+.. ..+.+........-.=+.++||||+..||.+...|+|++||+.+...
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l 77 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL 77 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee
Confidence 5667888877654 5678888776543 22222222223222357899999999999999999999999986554
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0014 Score=59.50 Aligned_cols=144 Identities=13% Similarity=0.039 Sum_probs=99.8
Q ss_pred CCCCee-eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCC------------CEEEEEeCCCcEEEEEcCCCeEEe
Q 023642 94 SGRGRF-SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADG------------SLFVAGFQASQIRIYDVERGWKIQ 160 (279)
Q Consensus 94 ~~~~~~-~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~------------~~l~s~~~d~~i~iwd~~~~~~~~ 160 (279)
++.|-+ .+....+.+.+....+..+.++-|...|+.+.|.|-. -+||++...|+|.+||...+..+.
T Consensus 24 ~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~ 103 (1062)
T KOG1912|consen 24 SPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN 103 (1062)
T ss_pred CccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh
Confidence 444444 2344555666666667777789999999999998832 156778888999999998875443
Q ss_pred eeeeccCCCcceEEEEECC---CC-CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEe
Q 023642 161 KDILAKSLRWTVTDTSLSP---DQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (279)
Q Consensus 161 ~~~~~~~~~~~v~~~~~sp---~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 236 (279)
. +..+..++.++.|-| +. ..|+.-....++.+|+..+|+...... ..+ ....|+.+.
T Consensus 104 ~---l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~--ys~--------------~iLs~f~~D 164 (1062)
T KOG1912|consen 104 W---LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD--YSH--------------EILSCFRVD 164 (1062)
T ss_pred h---hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc--cCC--------------cceeeeeeC
Confidence 3 567788899999976 34 356677777899999999998743221 111 145667887
Q ss_pred c-CCCEEEEecCCCeEEEEEC
Q 023642 237 T-DGRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 237 p-~g~~l~t~s~d~~i~vwd~ 256 (279)
| |.+.+...+..|.+.+-+.
T Consensus 165 Pfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 165 PFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred CCCcceEEEEccCceEEEEec
Confidence 7 4566666666677766665
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0013 Score=52.72 Aligned_cols=119 Identities=15% Similarity=0.094 Sum_probs=77.9
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecccccc
Q 023642 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH 213 (279)
Q Consensus 134 pd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 213 (279)
+++..+++++.++.|..||..+|+.+............ . ..++..++.+..++.++.+|..+|+...........
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA----P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG----E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce----e-eecccccccccceeeeEecccCCcceeeeecccccc
Confidence 35677777789999999999999877664331211111 1 224566677778889999999999985442111100
Q ss_pred ceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCC
Q 023642 214 DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (279)
Q Consensus 214 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~ 269 (279)
. .. .........++..++.+..++.|..+|+++|+.+-..+...
T Consensus 109 ~-----------~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 109 P-----------AG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp T-----------CS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred c-----------cc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 0 00 11122223337788888889999999999999998887644
|
... |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0011 Score=57.19 Aligned_cols=114 Identities=15% Similarity=0.227 Sum_probs=81.5
Q ss_pred CCCCCeEEEEECCCCCEEEE--EeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC---CeEEEE
Q 023642 122 QTTSRAYVSQFSADGSLFVA--GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIV 196 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~i~ 196 (279)
...++|...+|.|.++.|++ |-.+-.+.++|++.. . .- ......=..+-|+|.+++++.++-| |.+-+|
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l-~~----~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~ 345 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-L-RF----YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIF 345 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccc-e-EE----ecCCcccccccccCcccEEEEecCCccccceEEe
Confidence 56899999999998887754 457789999999876 2 21 1222234567899999999987755 579999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec------CCCeEEEEECCC
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------SDDCIYVYDLEA 258 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s------~d~~i~vwd~~~ 258 (279)
|..+..... .. |.+. ...-+.|+||++++.+.. .|..|.|||+..
T Consensus 346 ~~~~rf~~~-~~---------~~~~-------n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 346 DPAGRFKVA-GA---------FNGL-------NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred ccCCceEEE-EE---------eecC-------CceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 988755422 11 1111 345678999999988754 377899999964
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00027 Score=62.34 Aligned_cols=81 Identities=12% Similarity=0.061 Sum_probs=65.6
Q ss_pred eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceE-EEEECCCCCEEEEEeCCCeEEEEECC
Q 023642 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT-DTSLSPDQRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 121 ~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~~i~i~d~~ 199 (279)
..-...+.-+.|+|.-.++|.+..+|.|.+..+. .+.+.. ..-+...++ +++|.|||+.|+.|-.||+|++.|+.
T Consensus 17 ~~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwt---ip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 17 MSLPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWT---IPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred hccccceEEEEEcCccchhheeccCCcEEEEEec-cceeEe---ccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 3445778889999999999999999999998888 434443 222444555 99999999999999999999999999
Q ss_pred CCceee
Q 023642 200 SGTMES 205 (279)
Q Consensus 200 ~~~~~~ 205 (279)
++....
T Consensus 93 ~~~~l~ 98 (665)
T KOG4640|consen 93 KGGRLV 98 (665)
T ss_pred CCCcee
Confidence 988643
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0016 Score=56.80 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=81.1
Q ss_pred EEEECCCCC-EEE--EEeCC---------CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEE--EeCCCeEE
Q 023642 129 VSQFSADGS-LFV--AGFQA---------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY--ASMSPIVH 194 (279)
Q Consensus 129 ~~~~spd~~-~l~--s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~~d~~i~ 194 (279)
.+.|++-|+ +|+ +..-| .++++.++....+... ..-.++|.++.|+|+++.++. |-+=-.+.
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~----L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvt 297 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP----LLKEGPVHDVTWSPSGREFAVVYGFMPAKVT 297 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe----cCCCCCceEEEECCCCCEEEEEEecccceEE
Confidence 467888665 333 23333 3688888883333222 244679999999999987654 44667899
Q ss_pred EEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC---CCeEEEEECCCCeEEEEEeCC
Q 023642 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~---d~~i~vwd~~~~~~~~~~~~h 268 (279)
|||++..-.-.+. .++-+++-|+|.|++++.++- -|.+-|||+.+.+++.++..-
T Consensus 298 ifnlr~~~v~df~-------------------egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~ 355 (566)
T KOG2315|consen 298 IFNLRGKPVFDFP-------------------EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA 355 (566)
T ss_pred EEcCCCCEeEeCC-------------------CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC
Confidence 9999864432211 125678899999999988774 468999999998888877643
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.017 Score=46.79 Aligned_cols=146 Identities=23% Similarity=0.180 Sum_probs=86.3
Q ss_pred eEEEEEC-CCCCEEEEEeCCCcEEEEEcCCCeEEeeeeec-cC-CCcceEEEEECCCCCEEEEEeCC--------CeEEE
Q 023642 127 AYVSQFS-ADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KS-LRWTVTDTSLSPDQRHLVYASMS--------PIVHI 195 (279)
Q Consensus 127 V~~~~~s-pd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~-~~~~v~~~~~sp~~~~l~~~~~d--------~~i~i 195 (279)
...+++. +++.+++ +.. +.+.++|..+++........ .. ......++++.|+|++.++.... +.+..
T Consensus 42 ~~G~~~~~~~g~l~v-~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYV-ADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEE-EET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEE-EEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 6777777 6655544 444 44566699988543322221 12 34568899999999987776643 45777
Q ss_pred EECCCCceeeeeccccccceeEEeeCCC---------------------------------CCccccEEEEEEecCCCEE
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADD---------------------------------GGYSFGIFSLKFSTDGREL 242 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~v~~~~~sp~g~~l 242 (279)
++.. ++............++.|++++. ..-.+..-.+++..+|++.
T Consensus 120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~ 198 (246)
T PF08450_consen 120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLW 198 (246)
T ss_dssp EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EE
T ss_pred ECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEE
Confidence 7777 55544444444445555555443 0001124567777788777
Q ss_pred EEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 243 VAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 243 ~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
++....+.|.++|.. |+.+..+.-....+++++
T Consensus 199 va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 199 VADWGGGRIVVFDPD-GKLLREIELPVPRPTNCA 231 (246)
T ss_dssp EEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred EEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence 766667788888876 887777765534555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00011 Score=39.80 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=30.8
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYD 152 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd 152 (279)
.+..|...|.++.|+|++.++++++.|+.+++|+
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3567889999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0014 Score=58.99 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=72.2
Q ss_pred CCcEEEEEcCC----CeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCCceeeeeccccccceeEEe
Q 023642 145 ASQIRIYDVER----GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFS 219 (279)
Q Consensus 145 d~~i~iwd~~~----~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 219 (279)
+++|.+.|..+ +..+...+ ......+.++++|||+++++++ .+.++.|+|+.+.+...-.+. .... ...
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yI---PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~-~~~~--~vv 368 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYV---PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI-KPRD--AVV 368 (635)
T ss_pred CCEEEEEECCccccCCcceEEEE---ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC-Cccc--eEE
Confidence 35688888776 32222222 2233578899999999977655 689999999988553110000 0000 000
Q ss_pred eCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC----------CeEEEEEeCCCcc
Q 023642 220 AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA----------NKLSLRILAHTVN 271 (279)
Q Consensus 220 ~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~----------~~~~~~~~~h~~~ 271 (279)
..-.. --.....+|.++|....|...|..|..||+.+ ...+.++.-|.++
T Consensus 369 aevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~p 428 (635)
T PRK02888 369 AEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQP 428 (635)
T ss_pred Eeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcc
Confidence 00000 00335678999998888888899999999976 3456666655443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=8.5e-05 Score=66.42 Aligned_cols=122 Identities=11% Similarity=0.077 Sum_probs=94.6
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
+++.||...|..+.|+.+.+.|-++..+|-|.+|-+-.|......+. ....+.|.+++|..||..|+..-.||.|.+=.
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiN-nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMIN-NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhh-CcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 56899999999999999999999999999999999987744333221 23345789999999999999999999998877
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
+.+.+.- -.... ......+.|++|.+.++.+-..|.++++|..
T Consensus 144 vdGNRIw-gKeLk----------------g~~l~hv~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 144 VDGNRIW-GKELK----------------GQLLAHVLWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred eccceec-chhcc----------------hheccceeecccHHHHHhhhcCCcEEEeccc
Confidence 7654431 11110 0134578899999888888888899999874
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00058 Score=58.03 Aligned_cols=145 Identities=13% Similarity=0.008 Sum_probs=100.4
Q ss_pred eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-CeEEee-----------eeeccCCCcceEEEEECCCCCEEEEEe
Q 023642 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQK-----------DILAKSLRWTVTDTSLSPDQRHLVYAS 188 (279)
Q Consensus 121 ~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~-~~~~~~-----------~~~~~~~~~~v~~~~~sp~~~~l~~~~ 188 (279)
.-|..+|..+.++|-+..+++....|.|.-|.... -+.... ...+........++.|+|++..+.+-+
T Consensus 141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~ 220 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN 220 (558)
T ss_pred ccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence 56899999999999999999999999999999873 111111 011123344678999999999999999
Q ss_pred CCCeEEEEECCCCceeeeeccccccc-----------eeEEeeC------CCCCccccEEEEEEecCCCEEEEecCCCeE
Q 023642 189 MSPIVHIVDVGSGTMESLANVTEIHD-----------GLDFSAA------DDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251 (279)
Q Consensus 189 ~d~~i~i~d~~~~~~~~~~~~~~~~~-----------~~~~~~~------~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i 251 (279)
.|..|++++.++|+......-..... .+.|.-. -++...-.-..+.|...|++|+-++-=| |
T Consensus 221 ~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-i 299 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-I 299 (558)
T ss_pred cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-E
Confidence 99999999999998743222111000 0000000 0011223446778999999999887655 9
Q ss_pred EEEECCCCeEEEEEe
Q 023642 252 YVYDLEANKLSLRIL 266 (279)
Q Consensus 252 ~vwd~~~~~~~~~~~ 266 (279)
+|.++.++.++..+-
T Consensus 300 kvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 300 KVINLDTNTVVRILG 314 (558)
T ss_pred EEEEeecCeEEEEec
Confidence 999999998887764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00015 Score=66.16 Aligned_cols=110 Identities=13% Similarity=0.210 Sum_probs=83.3
Q ss_pred EEEEECCCCCEEEEEe----CCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 128 YVSQFSADGSLFVAGF----QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 128 ~~~~~spd~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
+-..|+|...+|+.++ ..|.|-||- ++|++...+ ...-.+++++|+|..-.|+.|=.-|.+.+|...+.+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V----t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV----TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc----ccceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 4457999999998775 357888874 556543221 1122467899999988888888889999998877665
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
...... |..+|..+.|||+|..|+|+..-|.|.+|....
T Consensus 94 htv~~t----------------h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 94 HTVVET----------------HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eeeccC----------------CCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 333222 778999999999999999999999999998763
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.56 E-value=5.9e-05 Score=68.96 Aligned_cols=125 Identities=21% Similarity=0.198 Sum_probs=94.1
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC--CeEEEE
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--PIVHIV 196 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~i~i~ 196 (279)
.+..|+...+|++|+-+.+.|+.|+..|.|++|++.+|..... ...|.++|+-+.=+.||..+++.+.- .-..+|
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s---~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES---VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc---ccccccccccccccCCcceeeeeccccCchHHHh
Confidence 4678889999999999999999999999999999999965443 46899999999999999887765533 257789
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEE
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI 265 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~ 265 (279)
++...... .. +|. .-.++.|+...++-+.|.....+.+||+.|+.+++++
T Consensus 1173 ~~~s~~~~-~H---------sf~---------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1173 DASSTGGP-RH---------SFD---------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred ccccccCc-cc---------ccc---------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHh
Confidence 98752211 00 111 2356888866555555666567999999998887773
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0019 Score=56.56 Aligned_cols=135 Identities=21% Similarity=0.169 Sum_probs=79.5
Q ss_pred eEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEE-eCCC--cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC
Q 023642 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAG-FQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (279)
Q Consensus 106 ~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 182 (279)
+.++++.....+..+ .-...-...+|+|||++|+.. ..|+ .|.++|+..+... + +..-.+.-..-.|+|||+
T Consensus 220 i~~~~l~~g~~~~i~-~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~---Lt~~~gi~~~Ps~spdG~ 294 (425)
T COG0823 220 IYYLDLNTGKRPVIL-NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-R---LTNGFGINTSPSWSPDGS 294 (425)
T ss_pred EEEEeccCCccceee-ccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-e---cccCCccccCccCCCCCC
Confidence 334444444333333 234445567899999988654 5566 4666677776532 2 222222334678999999
Q ss_pred EEEEEeC-CC--eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC-Ce--EEEEEC
Q 023642 183 HLVYASM-SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-DC--IYVYDL 256 (279)
Q Consensus 183 ~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d-~~--i~vwd~ 256 (279)
.|+..+. .| .|.+++..++....+.. ... .-..-.|+|||++++..+.. +. |.+.|+
T Consensus 295 ~ivf~Sdr~G~p~I~~~~~~g~~~~riT~----------~~~-------~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~ 357 (425)
T COG0823 295 KIVFTSDRGGRPQIYLYDLEGSQVTRLTF----------SGG-------GNSNPVWSPDGDKIVFESSSGGQWDIDKNDL 357 (425)
T ss_pred EEEEEeCCCCCcceEEECCCCCceeEeec----------cCC-------CCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence 9876653 34 47777777776533322 111 11266789999999876642 33 677777
Q ss_pred CCCeEE
Q 023642 257 EANKLS 262 (279)
Q Consensus 257 ~~~~~~ 262 (279)
.++...
T Consensus 358 ~~~~~~ 363 (425)
T COG0823 358 ASGGKI 363 (425)
T ss_pred CCCCcE
Confidence 665433
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.014 Score=40.52 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=63.1
Q ss_pred eEEEEECC---CC-CEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 127 AYVSQFSA---DG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 127 V~~~~~sp---d~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
|+++++.. || +.|+.|+.|..||+|+-+. .+... .....|+.+.-... ..++.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei----~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEI----TETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEE----ecccceEEEEEcCC-CEEEEEecCCEEEEEeCccee
Confidence 56676654 33 5899999999999998553 33321 22335787777665 668899999999999764332
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEec-C--C-CEEEEecCCCeEE
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-D--G-RELVAGSSDDCIY 252 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~--g-~~l~t~s~d~~i~ 252 (279)
.... ....+.++.+.. + | +.|++|-.+|.|-
T Consensus 75 WRiK-------------------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIK-------------------SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeec-------------------cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2111 111455555533 2 2 2577887777663
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0079 Score=48.75 Aligned_cols=119 Identities=16% Similarity=0.040 Sum_probs=75.7
Q ss_pred eeeeecCCCCceeeCCCCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCC-e-EE--eeeeeccCCCcceEEEEECCCCC
Q 023642 108 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFV-AGFQASQIRIYDVERG-W-KI--QKDILAKSLRWTVTDTSLSPDQR 182 (279)
Q Consensus 108 ~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~-s~~~d~~i~iwd~~~~-~-~~--~~~~~~~~~~~~v~~~~~sp~~~ 182 (279)
+|++.+......+...-...+.++|+||++.|+ +-+..+.|..+++... . .. .....+....+..-.+++..+|+
T Consensus 117 v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~ 196 (246)
T PF08450_consen 117 VYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN 196 (246)
T ss_dssp EEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-
T ss_pred eEEECCCCeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC
Confidence 444544422233344456678999999999775 5677789999998632 2 11 12222233333478899999999
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEe-cCCCEEE
Q 023642 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS-TDGRELV 243 (279)
Q Consensus 183 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~g~~l~ 243 (279)
+.++....+.|.++|.. |+......... ..+++++|. ++.+.|+
T Consensus 197 l~va~~~~~~I~~~~p~-G~~~~~i~~p~----------------~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 197 LWVADWGGGRIVVFDPD-GKLLREIELPV----------------PRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp EEEEEETTTEEEEEETT-SCEEEEEE-SS----------------SSEEEEEEESTTSSEEE
T ss_pred EEEEEcCCCEEEEECCC-ccEEEEEcCCC----------------CCEEEEEEECCCCCEEE
Confidence 98888889999999998 66544333210 168899994 5655444
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0024 Score=55.80 Aligned_cols=123 Identities=14% Similarity=0.086 Sum_probs=79.7
Q ss_pred CCeEEEEECCCCCEEEEEeC-----------CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeE
Q 023642 125 SRAYVSQFSADGSLFVAGFQ-----------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i 193 (279)
..|.-+.|||..++|++=+. ...++|||+.+|...+.+......-..-.-..||-|++++|--..+ .|
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-si 328 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SI 328 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eE
Confidence 45788999999999998653 2489999999997666544322211111235799999999877664 68
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-----CCeEEEEECCCCeEEEE
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----DDCIYVYDLEANKLSLR 264 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-----d~~i~vwd~~~~~~~~~ 264 (279)
.||+...-........ .-..|....|+|.+..||--.. -..+.+-.+.+++.+.+
T Consensus 329 sIyEtpsf~lld~Ksl----------------ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSL----------------KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRT 388 (698)
T ss_pred EEEecCceeeeccccc----------------CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeee
Confidence 9998876433211111 1125777888998888875332 23566666666554443
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00039 Score=58.23 Aligned_cols=81 Identities=15% Similarity=0.073 Sum_probs=65.8
Q ss_pred ceeeCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC-EEEEEeCCCeEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHI 195 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~i 195 (279)
..+.+|...|..++|||..+ ++..++.+++|+|.|+.+..++... ..+ ..+++++|.-|.. +|+.|...|.|.+
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy---~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY---IAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe---ecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 35678888999999999776 7889999999999999998665542 233 4799999998765 5667778999999
Q ss_pred EECCCCc
Q 023642 196 VDVGSGT 202 (279)
Q Consensus 196 ~d~~~~~ 202 (279)
||++..+
T Consensus 263 yD~R~~~ 269 (463)
T KOG1645|consen 263 YDMRQPE 269 (463)
T ss_pred EEccCCC
Confidence 9998644
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0045 Score=56.43 Aligned_cols=141 Identities=9% Similarity=0.026 Sum_probs=90.3
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCC-----CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEE
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSAD-----GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD 174 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd-----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 174 (279)
.+.|+++.+..+.+.+... .....-++.+++++|| .+.+++|+.-| +.++.-.--... ....+....++|.+
T Consensus 89 CS~DGkv~I~sl~~~~~~~-~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk-~~v~l~~~eG~I~~ 165 (846)
T KOG2066|consen 89 CSDDGKVVIGSLFTDDEIT-QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK-DSVVLSEGEGPIHS 165 (846)
T ss_pred ecCCCcEEEeeccCCccce-eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc-cceeeecCccceEE
Confidence 3567777777666554332 2344578999999997 56889999888 777753311111 11134567789999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEE
Q 023642 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (279)
Q Consensus 175 ~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vw 254 (279)
+.| .|++||-++.+| |++||+.+++............ .+. --...+.|.++.+.+ . |+..+|+|.
T Consensus 166 i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~----R~e------~fpphl~W~~~~~LV-I-GW~d~v~i~ 230 (846)
T KOG2066|consen 166 IKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSV----RPE------LFPPHLHWQDEDRLV-I-GWGDSVKIC 230 (846)
T ss_pred EEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCC----Ccc------cCCCceEecCCCeEE-E-ecCCeEEEE
Confidence 999 578999999888 8999999887744333222110 010 022357787766544 3 344568888
Q ss_pred ECCC
Q 023642 255 DLEA 258 (279)
Q Consensus 255 d~~~ 258 (279)
.++.
T Consensus 231 ~I~~ 234 (846)
T KOG2066|consen 231 SIKK 234 (846)
T ss_pred EEec
Confidence 8873
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0017 Score=58.98 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=87.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCC------------CEEEEEeCCC
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ------------RHLVYASMSP 191 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~------------~~l~~~~~d~ 191 (279)
...-.++.|+|.| ++|.|+. ..|.+-|..+-+.+.. ...|...|+.+.|.|-. -.||++...|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqs---ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQS---IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhc---cccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3446778899876 5666665 5788999887765554 45677889999998742 2467777889
Q ss_pred eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec---CC-CEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST---DG-RELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 192 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~g-~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
.|.+||...+..+..... |...+..++|-| +. ..|+.-....+|.+|+..+|+.+-+...
T Consensus 90 rIil~d~~~~s~~~~l~~----------------~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y 153 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSH----------------SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY 153 (1062)
T ss_pred cEEEEEehhhhhhhhhcC----------------CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc
Confidence 999999998776543321 344677777765 44 3455556678999999999987766653
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0072 Score=52.30 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=75.5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccce
Q 023642 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (279)
Q Consensus 136 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 215 (279)
+..++.++.++.+..||..+|+.+.... ... .... ..++..++.++.++.+..+|..+++.........
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~----~~~-~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~---- 309 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRD----ASS-YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELK---- 309 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeec----cCC-ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEcccccc----
Confidence 4577778889999999999997665432 111 1112 2256788888899999999999987643211000
Q ss_pred eEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCc
Q 023642 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~ 270 (279)
. ....+... .+..+++++.++.|+++|..+|+.+.+++.+..
T Consensus 310 ----------~-~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~ 351 (377)
T TIGR03300 310 ----------Y-RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS 351 (377)
T ss_pred ----------C-CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence 0 01111122 366888899999999999999999988886554
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0047 Score=59.40 Aligned_cols=134 Identities=16% Similarity=0.169 Sum_probs=85.9
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEE----EcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIY----DVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~d~~i~iw----d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
...+.|.++.+-++...++.+..+|.|.+. +......- ........|.+++||||+..|+....++++.+..
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E----~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE----IVGSVDSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE----EEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 345789999999999999999999999999 55544221 1224455799999999999999999888887764
Q ss_pred CCCCceeeeecc-------------ccccceeEEeeCCCCC-------------------ccccEEEEEEecCCCEEEEe
Q 023642 198 VGSGTMESLANV-------------TEIHDGLDFSAADDGG-------------------YSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 198 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~-------------------~~~~v~~~~~sp~g~~l~t~ 245 (279)
. +-....-... ..+...-.|.|...+. +...-..++|-.||.++|+.
T Consensus 149 ~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 149 R-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred c-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence 2 2111110000 0000001122211110 11244678999999999986
Q ss_pred cC----C--CeEEEEECCCCeE
Q 023642 246 SS----D--DCIYVYDLEANKL 261 (279)
Q Consensus 246 s~----d--~~i~vwd~~~~~~ 261 (279)
+. + +.|+||+.. |..
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L 248 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GEL 248 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceE
Confidence 63 2 579999975 543
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0036 Score=54.77 Aligned_cols=124 Identities=22% Similarity=0.275 Sum_probs=80.6
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEe---CC-CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCC
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGF---QA-SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSP 191 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~---~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~ 191 (279)
...+..-...+..-+|+|++..++.-. .. ..+.++|+.++..... . ...+.-...+|+|||+.|+.+. .|+
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i-~---~~~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI-L---NFNGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee-e---ccCCccCCccCCCCCCEEEEEECCCC
Confidence 344555667788889999999876542 22 4699999998854332 1 2333455678999999876544 455
Q ss_pred --eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CC--eEEEEECCCCeE
Q 023642 192 --IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DD--CIYVYDLEANKL 261 (279)
Q Consensus 192 --~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~--~i~vwd~~~~~~ 261 (279)
.|+++|+.++....+.... +.-..-.|+|||++++..+. .| .|.+.|...+..
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~~~-----------------gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTNGF-----------------GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred CccEEEEcCCCCcceecccCC-----------------ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 4777888887743322111 12225678999999886653 34 577777776543
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0018 Score=52.75 Aligned_cols=135 Identities=14% Similarity=0.240 Sum_probs=86.2
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-EEee-eeeccCCC------------cceEEEEECCCC--CEEEE
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQK-DILAKSLR------------WTVTDTSLSPDQ--RHLVY 186 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~-~~~~-~~~~~~~~------------~~v~~~~~sp~~--~~l~~ 186 (279)
-.+.|+++.|...|.+|++|...|+|.+|.-.... |..+ +..+++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35779999999999999999999999999765431 2111 12233442 247778886654 34667
Q ss_pred EeCCCeEEEEECCCCceeeeec----------------------ccccccee-EEeeC----CCCCccccEEEEEEecCC
Q 023642 187 ASMSPIVHIVDVGSGTMESLAN----------------------VTEIHDGL-DFSAA----DDGGYSFGIFSLKFSTDG 239 (279)
Q Consensus 187 ~~~d~~i~i~d~~~~~~~~~~~----------------------~~~~~~~~-~~~~~----~~~~~~~~v~~~~~sp~g 239 (279)
...|++|++|.+.......+.. ..+..... ..... ....|...|.+++|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7789999999987653211100 00000000 01111 114588899999999998
Q ss_pred CEEEEecCCCeEEEEECCC
Q 023642 240 RELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 240 ~~l~t~s~d~~i~vwd~~~ 258 (279)
..++++ .|-.|-+|++.-
T Consensus 185 et~lSa-DdLrINLWnl~i 202 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEI 202 (460)
T ss_pred heeeec-cceeeeeccccc
Confidence 888765 467799998864
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00076 Score=36.18 Aligned_cols=32 Identities=31% Similarity=0.333 Sum_probs=29.0
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
..|...|.++.|+|++.++++++.|+.+++||
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 46777899999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.041 Score=44.00 Aligned_cols=108 Identities=23% Similarity=0.297 Sum_probs=69.5
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC-cc------eEEEEECCCCCEEEEEeCCCe-EEEEECCCCceeee
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WT------VTDTSLSPDQRHLVYASMSPI-VHIVDVGSGTMESL 206 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~------v~~~~~sp~~~~l~~~~~d~~-i~i~d~~~~~~~~~ 206 (279)
++..++.+..++.|..+|+.+|+.+.......... .. +..-....++ .++.++.++. +.+ |+.+++...
T Consensus 121 ~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w- 197 (238)
T PF13360_consen 121 DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLW- 197 (238)
T ss_dssp ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEE-
T ss_pred ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEE-
Confidence 47888889889999999999998776643311111 11 1222222344 7777777775 555 999998542
Q ss_pred eccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEE
Q 023642 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL 263 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~ 263 (279)
..... .+.. ...+++..|+.++.++.|..||+++|+.+-
T Consensus 198 ~~~~~-----------------~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 198 SKPIS-----------------GIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EECSS------------------ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred EecCC-----------------CccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 21100 1222 134677788877789999999999998763
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.026 Score=52.12 Aligned_cols=150 Identities=15% Similarity=0.203 Sum_probs=99.0
Q ss_pred ceEeeeeecCCC---Ccee-----eC-----CCCCeEEEEECCCCCEEEEEeCCCcEEEEE--cCCCeEEeeeeeccCCC
Q 023642 105 CHMLSRYLPVNG---PWPV-----DQ-----TTSRAYVSQFSADGSLFVAGFQASQIRIYD--VERGWKIQKDILAKSLR 169 (279)
Q Consensus 105 ~~~~~~~~~~~~---~~~l-----~~-----h~~~V~~~~~spd~~~l~s~~~d~~i~iwd--~~~~~~~~~~~~~~~~~ 169 (279)
.+.+|++.+.++ |+++ .. -+.++.++++|.+-+.+|.|-.+|.|..+. +...+-. +.......+
T Consensus 93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~~~~ 171 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-RQDYSHRGK 171 (933)
T ss_pred EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc-ceeeeccCC
Confidence 677888776422 3333 22 267899999999999999999999998884 2211111 212234556
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC
Q 023642 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~ 249 (279)
.+|+++++..++..++-......|.+|.+.+.. ..... ... |...++|.+|++....+++++ +.
T Consensus 172 ~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~~~---------ld~-----~G~~lnCss~~~~t~qfIca~-~e 235 (933)
T KOG2114|consen 172 EPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PSLKV---------LDN-----NGISLNCSSFSDGTYQFICAG-SE 235 (933)
T ss_pred CCceeeEEecCCceeEEEEecceeEEEEecCCC-cceee---------ecc-----CCccceeeecCCCCccEEEec-Cc
Confidence 799999999998874444445679999988443 11110 111 334788999987655455544 45
Q ss_pred eEEEEECCCCeEEEEEe-CCCcc
Q 023642 250 CIYVYDLEANKLSLRIL-AHTVN 271 (279)
Q Consensus 250 ~i~vwd~~~~~~~~~~~-~h~~~ 271 (279)
.+.+|+....++-..++ ||...
T Consensus 236 ~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 236 FLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred eEEEEcCCCcceeeeecCCCeEE
Confidence 69999998777777777 77643
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=7e-05 Score=66.12 Aligned_cols=121 Identities=15% Similarity=0.153 Sum_probs=83.8
Q ss_pred CceeeCCCCCeEEEEECC-CCCEEEEEe----CCCcEEEEEcCCCe--EEeeeeeccCCCcceEEEEECCCCCEEEEEeC
Q 023642 117 PWPVDQTTSRAYVSQFSA-DGSLFVAGF----QASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~sp-d~~~l~s~~----~d~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 189 (279)
.....+|....++++|++ |.+.||+|- .|..+.|||+.++- +........+......+++|-.+.+++.+|..
T Consensus 95 ~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~ 174 (783)
T KOG1008|consen 95 AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT 174 (783)
T ss_pred ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc
Confidence 345778899999999999 778888873 46689999998772 22111111123334568888888899999999
Q ss_pred CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec-CCCEEEEecCCCeEEEEE
Q 023642 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 190 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~t~s~d~~i~vwd 255 (279)
.+.++++|++-....... + .+..+..+...| .+.++++-. |+.|.+||
T Consensus 175 sr~~~ifdlRqs~~~~~s-v----------------nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 175 SRSVHIFDLRQSLDSVSS-V----------------NTKYVQGITVDPFSPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred cchhhhhhhhhhhhhhhh-h----------------hhhhcccceecCCCCCceeccc-cCceeecc
Confidence 999999999832211100 0 122466677788 677887655 89999999
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.055 Score=47.48 Aligned_cols=117 Identities=25% Similarity=0.331 Sum_probs=73.0
Q ss_pred eEEEEECCCCCEEEEE-eCCC----cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCC----------
Q 023642 127 AYVSQFSADGSLFVAG-FQAS----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP---------- 191 (279)
Q Consensus 127 V~~~~~spd~~~l~s~-~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---------- 191 (279)
+....+||||++++.+ +..| .|+++|+.+++.+...+... ....+.|.+|++.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~----~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP----KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE----ESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc----ccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 3467899999999765 3334 69999999997665432211 123399999999887766433
Q ss_pred -eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec---CC-CeEEEEECCCC
Q 023642 192 -IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SD-DCIYVYDLEAN 259 (279)
Q Consensus 192 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s---~d-~~i~vwd~~~~ 259 (279)
.|+.|.+.+...... +.|.... .......+..++|+++|+..+ .+ ..+++.|+..+
T Consensus 202 ~~v~~~~~gt~~~~d~---------lvfe~~~---~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDE---------LVFEEPD---EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEEETTS-GGG-E---------EEEC-TT---CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred cEEEEEECCCChHhCe---------eEEeecC---CCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 377777776553211 1122221 111366788999999877432 23 46888898864
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0029 Score=56.17 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=65.8
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccE-EEEEEecCCCEEEEecCC
Q 023642 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI-FSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~sp~g~~l~t~s~d 248 (279)
..+.-+.|+|.-..||.+..+|.+.+..+.-.+. ..... +.-.+ .+++|.|||+.|+.|-.|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRl-wtip~----------------p~~~v~~sL~W~~DGkllaVg~kd 83 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRL-WTIPI----------------PGENVTASLCWRPDGKLLAVGFKD 83 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecccee-EeccC----------------CCCccceeeeecCCCCEEEEEecC
Confidence 3578899999999999999999998887773222 21111 01134 499999999999999999
Q ss_pred CeEEEEECCCCeEEEEEe-CCCcceeEEE
Q 023642 249 DCIYVYDLEANKLSLRIL-AHTVNIALWI 276 (279)
Q Consensus 249 ~~i~vwd~~~~~~~~~~~-~h~~~v~~v~ 276 (279)
|+|++.|+.++..+.... .-..+|.+++
T Consensus 84 G~I~L~Dve~~~~l~~~~~s~e~~is~~~ 112 (665)
T KOG4640|consen 84 GTIRLHDVEKGGRLVSFLFSVETDISKGI 112 (665)
T ss_pred CeEEEEEccCCCceeccccccccchheee
Confidence 999999999988776632 2234444444
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.002 Score=54.09 Aligned_cols=92 Identities=22% Similarity=0.253 Sum_probs=66.5
Q ss_pred EEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC-EEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCc
Q 023642 148 IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGY 226 (279)
Q Consensus 148 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (279)
+++.+..+-+... .+..+...|.+++|+|..+ ++..++.+.+|+|.|+++......... +
T Consensus 175 v~~l~~~~fkssq---~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a----------------~ 235 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ---ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA----------------Y 235 (463)
T ss_pred eEEeccCCcchhh---cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec----------------c
Confidence 4455444433322 2456777899999999887 678899999999999998766432221 1
Q ss_pred cccEEEEEEecCCC-EEEEecCCCeEEEEECCCC
Q 023642 227 SFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 227 ~~~v~~~~~sp~g~-~l~t~s~d~~i~vwd~~~~ 259 (279)
..+++++|.-|.. ++..|-..|.|.|||++..
T Consensus 236 -~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 236 -NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred -CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 3789999988755 5556667899999999853
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0024 Score=37.07 Aligned_cols=32 Identities=16% Similarity=0.311 Sum_probs=29.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVE 154 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~ 154 (279)
....|.+++|+|...+||.|+.+|.|.+|.+.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 35679999999999999999999999999983
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0035 Score=54.21 Aligned_cols=120 Identities=19% Similarity=0.154 Sum_probs=81.2
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCC-----
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----- 191 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----- 191 (279)
...+..-.-++..+.|||.|.+|++.... .|.+|+-.....+... .|. .|..+.|+|.++||.+=+..+
T Consensus 25 ~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~----~~~-~V~~~~fSP~~kYL~tw~~~pi~~pe 98 (561)
T COG5354 25 HTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF----RHP-DVKYLDFSPNEKYLVTWSREPIIEPE 98 (561)
T ss_pred cccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeee----ecC-CceecccCcccceeeeeccCCccChh
Confidence 33455577889999999999999988875 5889987766443331 233 599999999999999876433
Q ss_pred ----------eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEEC
Q 023642 192 ----------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 192 ----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~ 256 (279)
.+.+||+.+|............ +.++ .-+.|+.+..+++-. ....++|+++
T Consensus 99 ~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~------------~~~W-p~~k~s~~D~y~ARv-v~~sl~i~e~ 159 (561)
T COG5354 99 IEISPFTSKNNVFVWDIASGMIVFSFNGISQP------------YLGW-PVLKFSIDDKYVARV-VGSSLYIHEI 159 (561)
T ss_pred hccCCccccCceeEEeccCceeEeeccccCCc------------cccc-ceeeeeecchhhhhh-ccCeEEEEec
Confidence 4999999999875433221110 0011 146777777776543 2345788886
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0033 Score=59.11 Aligned_cols=70 Identities=13% Similarity=0.070 Sum_probs=55.5
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeee
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~ 206 (279)
.+..++.|+..|.+...|....-+ .........++|++++|+.+|+.++.|-.+|.|.+||+..++....
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~--~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG--PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKV 167 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc--hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceee
Confidence 556788999999999998876422 1122334567999999999999999999999999999999876443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.036 Score=47.96 Aligned_cols=109 Identities=15% Similarity=0.105 Sum_probs=72.7
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccc
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 214 (279)
.+..++.++.++.|..+|..+|+.+.......... .... .++..++.++.++.+..+|..+|+.........
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~---~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--- 135 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLS---GGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS--- 135 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc---cceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc---
Confidence 46688888899999999999997766532221111 1122 256788888899999999999998754322111
Q ss_pred eeEEeeCCCCCccccEEE-EEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 215 GLDFSAADDGGYSFGIFS-LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 215 ~~~~~~~~~~~~~~~v~~-~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
.+.+ ... .+..++.++.++.|+.||.++|+.+-++..
T Consensus 136 --------------~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 136 --------------EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred --------------eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 1111 111 244666777889999999999987766653
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.031 Score=51.67 Aligned_cols=145 Identities=11% Similarity=0.098 Sum_probs=92.2
Q ss_pred eeCCCCC-eEEEEECCCCCEEEEEeCCCc-----EEEEEcCCC------eEEe--eeee--ccCCCcceEEEEECCCCCE
Q 023642 120 VDQTTSR-AYVSQFSADGSLFVAGFQASQ-----IRIYDVERG------WKIQ--KDIL--AKSLRWTVTDTSLSPDQRH 183 (279)
Q Consensus 120 l~~h~~~-V~~~~~spd~~~l~s~~~d~~-----i~iwd~~~~------~~~~--~~~~--~~~~~~~v~~~~~sp~~~~ 183 (279)
+..+... |..+....+..+|++-+.|+. |+|||++.- .++. .... ......++..++.+.+-+.
T Consensus 60 fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~ 139 (933)
T KOG2114|consen 60 FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKT 139 (933)
T ss_pred heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccE
Confidence 4555555 555555555578888777654 899998642 2331 1111 1123568899999999999
Q ss_pred EEEEeCCCeEEEEECC--CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeE
Q 023642 184 LVYASMSPIVHIVDVG--SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (279)
Q Consensus 184 l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~ 261 (279)
+++|-.+|.|..+.=. ..+.. ...+... -..+|+.+++..+++-++....-..|.+|.+....+
T Consensus 140 Iv~Gf~nG~V~~~~GDi~RDrgs----------r~~~~~~----~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p 205 (933)
T KOG2114|consen 140 IVCGFTNGLVICYKGDILRDRGS----------RQDYSHR----GKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTP 205 (933)
T ss_pred EEEEecCcEEEEEcCcchhcccc----------ceeeecc----CCCCceeeEEecCCceeEEEEecceeEEEEecCCCc
Confidence 9999999999887321 11110 0111111 224899999998888744444456799999984443
Q ss_pred -EEEEeCCCcceeEEEee
Q 023642 262 -SLRILAHTVNIALWITC 278 (279)
Q Consensus 262 -~~~~~~h~~~v~~v~~~ 278 (279)
...+..|..+++|...+
T Consensus 206 ~~~~ld~~G~~lnCss~~ 223 (933)
T KOG2114|consen 206 SLKVLDNNGISLNCSSFS 223 (933)
T ss_pred ceeeeccCCccceeeecC
Confidence 45577888888887653
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.056 Score=49.36 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=73.9
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE--CCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL--SPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
...-+.-|.-++..+.-+...++.|||...+..... ..+ ...+.|.++.| .|+++.+++.+..+.|.+|-...-..
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~-~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE-ESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEe-eee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 334444444444444444456899999998864332 112 44668999998 56899999999999999986532111
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
............+.+..... .+|.+..|.++|..++.++ +.++|+|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~----h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTP----HPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCC----CCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 00000011112223333221 3789999999997766443 568888753
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.1 Score=43.17 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=41.6
Q ss_pred cceEEEEECCCCCEEEEEe-CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC
Q 023642 170 WTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d 248 (279)
.++-+|++++++.+++..+ ..+.+.+||..++........ ..+..++-.+++ ++++.+..
T Consensus 217 ~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l------------------~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 217 GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL------------------PDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc------------------CceeeeeecCCc-eEEeCCCc
Confidence 4678888888888776555 667899999999987544332 145667766666 66665543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.078 Score=51.26 Aligned_cols=130 Identities=11% Similarity=0.175 Sum_probs=79.4
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-EEeeeeeccCCCcceEEEEECCCC-CEEEEEeCCCeEEEEEC-
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDV- 198 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~- 198 (279)
.....|..++|++|+..||.--.|. |.+|...... .++..+.+... ..+..+.|+|.. ..|.....++.+..++.
T Consensus 302 ~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 302 PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred CCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 4567899999999999999987664 9999988764 33333333332 235559999954 44666666565544432
Q ss_pred ---CCCce----------------eeeecc--ccccceeE-EeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEEC
Q 023642 199 ---GSGTM----------------ESLANV--TEIHDGLD-FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 199 ---~~~~~----------------~~~~~~--~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~ 256 (279)
..+.. ..+..+ ...+..+. +.- .-...|.+++|++++..+++-..|+.|.+|..
T Consensus 380 ~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l----~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 380 WDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL----ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred EEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE----cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 21110 000000 00000000 000 02347999999999888888889998888885
Q ss_pred C
Q 023642 257 E 257 (279)
Q Consensus 257 ~ 257 (279)
.
T Consensus 456 ~ 456 (928)
T PF04762_consen 456 D 456 (928)
T ss_pred c
Confidence 4
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.039 Score=44.81 Aligned_cols=132 Identities=18% Similarity=0.256 Sum_probs=80.7
Q ss_pred EECCCCCEEEEEeCC-----CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC----------------
Q 023642 131 QFSADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---------------- 189 (279)
Q Consensus 131 ~~spd~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---------------- 189 (279)
.|||||.+|...-+| |.|-|||.+.+ ..+.-.+..|.-....+.|.+||+.++.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchh
Confidence 599999999876443 68999999854 2333345667667889999999999887654
Q ss_pred --CCeEEEEECCCCceeeeecccc-----------------ccceeEEeeCCC-------------------------CC
Q 023642 190 --SPIVHIVDVGSGTMESLANVTE-----------------IHDGLDFSAADD-------------------------GG 225 (279)
Q Consensus 190 --d~~i~i~d~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~-------------------------~~ 225 (279)
...+-+.|..+|+.+....... ...++.|.+..+ -.
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~ 277 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAA 277 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHH
Confidence 1245666766666532222110 011122222221 00
Q ss_pred ccccEEEEEEecCCCEEE-EecCCCeEEEEECCCCeEEEE
Q 023642 226 YSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLR 264 (279)
Q Consensus 226 ~~~~v~~~~~sp~g~~l~-t~s~d~~i~vwd~~~~~~~~~ 264 (279)
....|-+++.+-+..+++ |+=..+...+||.++|..+..
T Consensus 278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 123455677765544444 444667899999999987654
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.039 Score=49.99 Aligned_cols=120 Identities=12% Similarity=0.106 Sum_probs=66.3
Q ss_pred ECCCCCEEEEE-eCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCC---------------eEEE
Q 023642 132 FSADGSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP---------------IVHI 195 (279)
Q Consensus 132 ~spd~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---------------~i~i 195 (279)
++|||+.+... -..+.+.+.|.++.+....+.... ....++++|+|+++++.+.+. .+.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg----npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG----NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC----CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 56677765333 334677888888776555543322 346678999999987775211 2222
Q ss_pred EECCC-------Cce-------eeeecccc----ccceeEEeeCCCCCccccEEEEEEecCCCEEEEec-CCCeEEEEEC
Q 023642 196 VDVGS-------GTM-------ESLANVTE----IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDL 256 (279)
Q Consensus 196 ~d~~~-------~~~-------~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s-~d~~i~vwd~ 256 (279)
++... |+. ........ ...-..+-+.+. ....+.++|||+++++++ .+.+|.|.|+
T Consensus 276 fni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGK-----sPHGV~vSPDGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 276 FNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPK-----NPHGVNTSPDGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred EchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCC-----CccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence 22221 100 00000000 000011122222 457789999999988665 5889999999
Q ss_pred CCCe
Q 023642 257 EANK 260 (279)
Q Consensus 257 ~~~~ 260 (279)
.+.+
T Consensus 351 ~k~k 354 (635)
T PRK02888 351 RKLD 354 (635)
T ss_pred hhhh
Confidence 8744
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.083 Score=42.37 Aligned_cols=110 Identities=18% Similarity=0.147 Sum_probs=78.4
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccce
Q 023642 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (279)
Q Consensus 136 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 215 (279)
..+++.|+..+.+.--|..+|......+. ...|.+-+.- -|.+++.|...|.+++.+..+|............
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il----g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v-- 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL----GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV-- 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh----CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh--
Confidence 45678888889999999999977665332 2234433332 4778999999999999999999654332221110
Q ss_pred eEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
. ......+++..+..+++|+..+..|.++..++.+.+
T Consensus 96 -------------k-~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 96 -------------K-VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred -------------c-cceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 1 123446789999999999999999999988887764
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.056 Score=51.86 Aligned_cols=130 Identities=18% Similarity=0.113 Sum_probs=84.2
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
..+.|.++.|..+...++.+...|.|.+-|..+..... .......|.+++|+||+..++....++++.+.+.. -.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei----vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~ 141 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEI----VGNVDNGISAASWSPDEELLALITGRQTLLFMTKD-FE 141 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccceee----eeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc-cc
Confidence 34789999999999999999999999999888763321 23445579999999999999988888877665431 11
Q ss_pred e---eee----------eccccccceeEEeeCCCC-------------C---ccccEEEEEEecCCCEEEEec----CC-
Q 023642 203 M---ESL----------ANVTEIHDGLDFSAADDG-------------G---YSFGIFSLKFSTDGRELVAGS----SD- 248 (279)
Q Consensus 203 ~---~~~----------~~~~~~~~~~~~~~~~~~-------------~---~~~~v~~~~~sp~g~~l~t~s----~d- 248 (279)
. ..+ .....+...-.|.+...+ + ....=.+++|--||+++++.. .+
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 1 011 111111111123322210 0 011124589999999998732 23
Q ss_pred CeEEEEECC
Q 023642 249 DCIYVYDLE 257 (279)
Q Consensus 249 ~~i~vwd~~ 257 (279)
+.|+|||..
T Consensus 222 RkirV~drE 230 (1265)
T KOG1920|consen 222 RKIRVYDRE 230 (1265)
T ss_pred eeEEEeccc
Confidence 789999986
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0092 Score=34.63 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=30.2
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
.....|..++|+|...+||.++.+|.|.+|.+ +++
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 33456999999999999999999999999999 444
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.13 Score=41.61 Aligned_cols=130 Identities=12% Similarity=0.165 Sum_probs=73.1
Q ss_pred eeeCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 119 PVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
.+.+-...++.++|+|+.. ++++....+.|..++.. |+.+.+ +.+.+. +...++++..++.++++.-.++.+.+++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~-i~l~g~-~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRR-IPLDGF-GDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEE-EE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEE-EeCCCC-CCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 3556667799999999755 55667777888888864 666655 445553 3588999988887777766789999998
Q ss_pred CCCCce-eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 198 VGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 198 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
+..... ....... .+.+.-. ..++..+-.++|.|.++.|+.+-......++.+.
T Consensus 93 ~~~~~~~~~~~~~~----~~~l~~~--~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~ 147 (248)
T PF06977_consen 93 IDDDTTSLDRADVQ----KISLGFP--NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVN 147 (248)
T ss_dssp E----TT--EEEEE----EEE---S-----SS--EEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred Eeccccccchhhce----EEecccc--cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEc
Confidence 844221 1111100 0111111 1133468899999988877777665555555443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.41 Score=42.00 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=39.2
Q ss_pred ccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC-CcceeEEEee
Q 023642 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TVNIALWITC 278 (279)
Q Consensus 228 ~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h-~~~v~~v~~~ 278 (279)
+++..+++||+|+++|.-..+|.+.+.+..-.+.+..+.-. ......+.+|
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC 268 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC 268 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEE
Confidence 46899999999999998888999999987766666666543 3455666666
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.1 Score=45.42 Aligned_cols=123 Identities=16% Similarity=0.219 Sum_probs=77.4
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEe----------------------------------------eeeec
Q 023642 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ----------------------------------------KDILA 165 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~----------------------------------------~~~~~ 165 (279)
.|+.+.|+++...|+.|...|.|.||.....+... .....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47889999999999999999998888653221110 00111
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec-----CC-
Q 023642 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DG- 239 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-----~g- 239 (279)
....++|++++.| |=-++|.|..+|.+.|.|+++...+....... .+.. ......++++.|+. |+
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-----~~~~---~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-----SFLS---KSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG-------T----SS----EEEEEEEEEE-TTSSS
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc-----cccc---cccccCeeEEEEEEEecCCCcc
Confidence 2335789999997 55699999999999999999888765433332 0000 01234677888863 33
Q ss_pred --CEEEEecCCCeEEEEECC
Q 023642 240 --RELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 240 --~~l~t~s~d~~i~vwd~~ 257 (279)
..|++|...|.+.+|.+.
T Consensus 154 SSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEE
T ss_pred cceEEEEEeCCCCEEEEEEe
Confidence 467788888999999875
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0097 Score=51.07 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=64.9
Q ss_pred CCCCCEEEEEe---------CCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 133 SADGSLFVAGF---------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 133 spd~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
|||+++++... ..+.+.+||+.+++.... ......+....|+|+|+.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l----~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL----TPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES----S-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC----cCCccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 68888887743 235789999999855432 12245688999999999998876 46899999888865
Q ss_pred eeeeccccccceeEEeeCCC----CCccccEEEEEEecCCCEEEEecCC
Q 023642 204 ESLANVTEIHDGLDFSAADD----GGYSFGIFSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~sp~g~~l~t~s~d 248 (279)
..+..-. ....+.+..+ .---..-..+-|||||++|+....|
T Consensus 76 ~~lT~dg---~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 76 TQLTTDG---EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp EESES-----TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred EEecccc---ceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 4443321 1111111111 0000122457899999999876543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.11 Score=47.74 Aligned_cols=113 Identities=17% Similarity=0.156 Sum_probs=63.3
Q ss_pred CeEEEEECCCCCEEEEEeCC------------CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeE
Q 023642 126 RAYVSQFSADGSLFVAGFQA------------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i 193 (279)
..+.-.|+|||..|++.... +.+.+.+++.++... ...+.|..+.|||||..|+... ++.|
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~------~~~g~Issl~wSpDG~RiA~i~-~g~v 470 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS------RVPGPISELQLSRDGVRAAMII-GGKV 470 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh------ccCCCcCeEEECCCCCEEEEEE-CCEE
Confidence 37888999999988777543 223223333332110 2345799999999999988766 4677
Q ss_pred EE---EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC--eEEEEECC
Q 023642 194 HI---VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD--CIYVYDLE 257 (279)
Q Consensus 194 ~i---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~--~i~vwd~~ 257 (279)
.+ -....|. ..+..... +... -...+.++.|..++.++ .+..+. .+...++.
T Consensus 471 ~Va~Vvr~~~G~-~~l~~~~~------l~~~----l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 471 YLAVVEQTEDGQ-YALTNPRE------VGPG----LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLD 527 (591)
T ss_pred EEEEEEeCCCCc-eeecccEE------eecc----cCCccccceEecCCEEE-EEecCCCCceEEEecC
Confidence 66 4444454 22211100 1000 11135788999998855 444433 34444444
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.016 Score=54.71 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=52.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCe
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 192 (279)
-.++|++++|+.||++++.|-.+|.|.+||...++..+.+.........|..+.+..++..++++...|.
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence 3689999999999999999999999999999998766654332222234555566666677778777775
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.19 Score=43.90 Aligned_cols=108 Identities=15% Similarity=0.066 Sum_probs=70.9
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccce
Q 023642 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (279)
Q Consensus 136 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 215 (279)
+..++.++.++.+..+|..+|+.+.+... . ....+. ..+..|+.++.++.+..+|..+|+..........
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~-~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~--- 325 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY----G-SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH--- 325 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC----C-CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCC---
Confidence 45667777889999999999976654321 1 111122 2466788888999999999999876432111000
Q ss_pred eEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
....+... .+..|+.++.++.|+..|..+|+.+.+.+-
T Consensus 326 ------------~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 326 ------------RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred ------------CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 01111122 255777888999999999999998877764
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.06 Score=49.34 Aligned_cols=115 Identities=13% Similarity=0.046 Sum_probs=64.3
Q ss_pred CCCeEEEEECCCCCEEEEEe------CCC--cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-CeEE
Q 023642 124 TSRAYVSQFSADGSLFVAGF------QAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIVH 194 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~------~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~i~ 194 (279)
...+...++||||+.++... .|. .|.+++.... . ... ..+. ..+.-.|+|||..|++.... ..++
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~-~~l--t~g~--~~t~PsWspDG~~lw~v~dg~~~~~ 422 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-A-VQV--LEGH--SLTRPSWSLDADAVWVVVDGNTVVR 422 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-c-eee--ecCC--CCCCceECCCCCceEEEecCcceEE
Confidence 34678999999999887665 244 4555554222 2 221 1222 37888999999988777533 2333
Q ss_pred EEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEE
Q 023642 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV 253 (279)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~v 253 (279)
+.+................... ...+.|..+.|||||..++... ++.|++
T Consensus 423 v~~~~~~gql~~~~vd~ge~~~--------~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 423 VIRDPATGQLARTPVDASAVAS--------RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred EeccCCCceEEEEeccCchhhh--------ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 3332221111111110000000 0123799999999999888655 466766
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.42 Score=42.90 Aligned_cols=123 Identities=12% Similarity=0.109 Sum_probs=73.4
Q ss_pred eeCCCCCeEEEEECCC----CCEEEEEeCCCcEEEEEcCC-----CeE-Eeeeeecc-CCCcceEEEEECCCCCEEEEEe
Q 023642 120 VDQTTSRAYVSQFSAD----GSLFVAGFQASQIRIYDVER-----GWK-IQKDILAK-SLRWTVTDTSLSPDQRHLVYAS 188 (279)
Q Consensus 120 l~~h~~~V~~~~~spd----~~~l~s~~~d~~i~iwd~~~-----~~~-~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 188 (279)
+-|....|..+.|.|- ...|.+.-....|.+|-+-. ++. ........ ...---..+.|||....|+.-.
T Consensus 52 viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT 131 (671)
T PF15390_consen 52 VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLT 131 (671)
T ss_pred EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEe
Confidence 4566788999999994 32444445558999998752 111 11111111 1111234678999988887766
Q ss_pred CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CCeEEEEECC
Q 023642 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLE 257 (279)
Q Consensus 189 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~~i~vwd~~ 257 (279)
....--+++++........ ++. ..+.|.|.+|.+||+.|+.+-. .=.-++||-.
T Consensus 132 ~~dvSV~~sV~~d~srVka---------Di~------~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKA---------DIK------TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCceeEeeeeeeCCceEEE---------ecc------CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 5555455566543322111 111 2347999999999998876543 3357889864
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.18 Score=47.38 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=64.1
Q ss_pred EEEEEeCCCcEEEEEcCCC-eE-EeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccce
Q 023642 138 LFVAGFQASQIRIYDVERG-WK-IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (279)
Q Consensus 138 ~l~s~~~d~~i~iwd~~~~-~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 215 (279)
.-+.|-.++.|..||.+-. .+ +..............+++-+.+| +||.|+.+|.||+||-.+ .. ...
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~--AKT------- 612 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG-KR--AKT------- 612 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc-hh--hhh-------
Confidence 4566777889999998753 22 21111111222346666666555 789999999999999433 21 111
Q ss_pred eEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEEC
Q 023642 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~ 256 (279)
.+.+-+ .+|..|..+.||+|++..+ +..+.+++.
T Consensus 613 -~lp~lG-----~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 613 -ALPGLG-----DPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred -cCCCCC-----CCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 111222 3899999999999987655 566777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.088 Score=50.62 Aligned_cols=115 Identities=12% Similarity=0.152 Sum_probs=72.9
Q ss_pred eEEEEECCCCCEEEEEe----CC-CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe---CCCeEEEEEC
Q 023642 127 AYVSQFSADGSLFVAGF----QA-SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS---MSPIVHIVDV 198 (279)
Q Consensus 127 V~~~~~spd~~~l~s~~----~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~i~i~d~ 198 (279)
=.++.|--||.++|+.. .+ .+|++||.+ |..-.. .....+.=.+++|-|.|..+++-. .|..|.+|.-
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~---se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr 273 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST---SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER 273 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc---cCcccccccceeecCCCCeEeeeeecCCCCcEEEEec
Confidence 35589999999998842 23 799999987 422111 112222346789999999998754 3456888875
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEE---ecCCCeEEEEECCC
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA---GSSDDCIYVYDLEA 258 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t---~s~d~~i~vwd~~~ 258 (279)
.+-+.-.. ...... ....+..++|+.++..|++ ......|.+|-+..
T Consensus 274 NGL~hg~f-~l~~p~------------de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 274 NGLRHGEF-VLPFPL------------DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CCcccccc-ccCCcc------------cccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 54332111 111110 1114889999999999987 44455699998765
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.6 Score=40.57 Aligned_cols=123 Identities=11% Similarity=0.152 Sum_probs=82.7
Q ss_pred CeEEEEECCCCCEEEEEeC---CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCC
Q 023642 126 RAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSG 201 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~ 201 (279)
.-..++++|++..+..+.. ++++.+.|..+........ .+. .+ ..+++.|+|..++... .++.+.+.|..+.
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~--vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~ 192 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP--VGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN 192 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe--cCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc
Confidence 5677899999988766654 6889999988887666522 221 23 8899999999766655 7889999997765
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC---CeEEEEECCCCeEEEE
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLR 264 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d---~~i~vwd~~~~~~~~~ 264 (279)
.... ...... .. --.....+.++|+|.++...... +.+...|..++.....
T Consensus 193 ~v~~-~~~~~~------~~-----~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 193 SVVR-GSVGSL------VG-----VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred ceec-cccccc------cc-----cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 5432 110000 00 00134568899999976654433 5899999988776654
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0034 Score=55.89 Aligned_cols=140 Identities=16% Similarity=0.176 Sum_probs=87.5
Q ss_pred cccceEeeeeecC-----CCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEE
Q 023642 102 ADCCHMLSRYLPV-----NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176 (279)
Q Consensus 102 ~d~~~~~~~~~~~-----~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 176 (279)
.|.++.+|++-.. +.+....+-.....+++|-.+.+++.+|.....+.++|++........+ .+..+..+.
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv----nTk~vqG~t 202 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV----NTKYVQGIT 202 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh----hhhhcccce
Confidence 4556777876543 1222222355667789999999999999998999999998542111111 122466678
Q ss_pred ECC-CCCEEEEEeCCCeEEEEEC-CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC-EEEEecCC-CeEE
Q 023642 177 LSP-DQRHLVYASMSPIVHIVDV-GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSD-DCIY 252 (279)
Q Consensus 177 ~sp-~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~t~s~d-~~i~ 252 (279)
..| .+.++++-+ |+.|.+||. ++-+. .+....... +.....+..++|.|..+ .+++.+.| ++|+
T Consensus 203 Vdp~~~nY~cs~~-dg~iAiwD~~rnien-pl~~i~~~~----------N~~~~~l~~~aycPtrtglla~l~RdS~tIr 270 (783)
T KOG1008|consen 203 VDPFSPNYFCSNS-DGDIAIWDTYRNIEN-PLQIILRNE----------NKKPKQLFALAYCPTRTGLLAVLSRDSITIR 270 (783)
T ss_pred ecCCCCCceeccc-cCceeeccchhhhcc-HHHHHhhCC----------CCcccceeeEEeccCCcchhhhhccCcceEE
Confidence 888 777887766 899999994 33322 111111110 01223688999999633 45566654 5899
Q ss_pred EEECC
Q 023642 253 VYDLE 257 (279)
Q Consensus 253 vwd~~ 257 (279)
.+|+.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 99985
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.032 Score=43.72 Aligned_cols=106 Identities=7% Similarity=0.008 Sum_probs=63.8
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccce
Q 023642 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (279)
Q Consensus 136 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 215 (279)
+..++.|+.+|.|.+|....--...... ......-...+.--.++.+.+++..|+.|+.|++.-.+.......
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~-~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~------ 142 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV-CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ------ 142 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhh-hcccccceeccccccccceeEEeccCCceeeeccccCceeeeecc------
Confidence 4678899999999999876221111100 011111112222223556788999999999999987776443211
Q ss_pred eEEeeCCCCCcc-ccEEEEEEecCCCEEEEe--cCCCeEEEEECCC
Q 023642 216 LDFSAADDGGYS-FGIFSLKFSTDGRELVAG--SSDDCIYVYDLEA 258 (279)
Q Consensus 216 ~~~~~~~~~~~~-~~v~~~~~sp~g~~l~t~--s~d~~i~vwd~~~ 258 (279)
|. ........+..+++++.+ |.|..++.|++..
T Consensus 143 ----------h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 143 ----------HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ----------ccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 22 244445555566777777 7788888888754
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.036 Score=51.62 Aligned_cols=108 Identities=19% Similarity=0.148 Sum_probs=73.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccc
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 214 (279)
++..++.|+--..+..+|+.+.+..+.. ..... .|+- +..+++++.+|...|+|.+-|..+.+.+....
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-~v~a~--~v~i--mR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~------ 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTT-NVSAS--GVTI--MRYNNRNLFCGDTRGTVFLRDPNSFETIHTFD------ 214 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeee-eccCC--ceEE--EEecCcEEEeecccceEEeecCCcCceeeeee------
Confidence 4456777777778889999987554431 11111 2333 33478899999999999999999887654332
Q ss_pred eeEEeeCCCCCccccEEEEEEecCCCEEEEecC---------CCeEEEEECCCCeEEEEE
Q 023642 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---------DDCIYVYDLEANKLSLRI 265 (279)
Q Consensus 215 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~---------d~~i~vwd~~~~~~~~~~ 265 (279)
. |++.|.++. -.|+.|++++. |..|+|||++.-+.+.-+
T Consensus 215 -----a-----Hs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI 262 (1118)
T KOG1275|consen 215 -----A-----HSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI 262 (1118)
T ss_pred -----c-----cccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence 2 666886654 45889998874 456899999875544333
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.39 Score=33.41 Aligned_cols=65 Identities=17% Similarity=0.048 Sum_probs=40.8
Q ss_pred eEEEEECC---CC-CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC
Q 023642 172 VTDTSLSP---DQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (279)
Q Consensus 172 v~~~~~sp---~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~ 247 (279)
|+++++.. || +.|+.|+.|..|++|+-..-.. -.. -...|.+++-... ..++.+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~--Ei~-----------------e~~~v~~L~~~~~-~~F~Y~l~ 61 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVA--EIT-----------------ETDKVTSLCSLGG-GRFAYALA 61 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEE--EEe-----------------cccceEEEEEcCC-CEEEEEec
Confidence 55666554 33 5799999999999997653221 111 1126777776655 45677777
Q ss_pred CCeEEEEEC
Q 023642 248 DDCIYVYDL 256 (279)
Q Consensus 248 d~~i~vwd~ 256 (279)
+|+|-+|+-
T Consensus 62 NGTVGvY~~ 70 (111)
T PF14783_consen 62 NGTVGVYDR 70 (111)
T ss_pred CCEEEEEeC
Confidence 777666654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.39 Score=42.46 Aligned_cols=121 Identities=19% Similarity=0.158 Sum_probs=56.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE-CCCC
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD-VGSG 201 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d-~~~~ 201 (279)
..-....+.++|+|++++. ..||.-.|+......... .+.-....|.++++ +|+-....+|.|+. ..+.
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~--------~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA--------FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE--------EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc--------cCceeEEEEecCcc-EEEEECCCeEEEEEcCccc
Confidence 3445677888998888877 445777777744332211 11345567777444 55555567777752 2211
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
....+ ... ..+..+-. |..|...+.+ .|.+||+.+++.+.++... +|..|++
T Consensus 101 ~~k~i-~~~-----------------~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~W 152 (443)
T PF04053_consen 101 VVKSI-KLP-----------------FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIW 152 (443)
T ss_dssp TT------S-----------------S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE
T ss_pred cceEE-cCC-----------------cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEE
Confidence 10001 000 01222211 6666655543 6888888888887777643 2555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.04 Score=49.83 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=61.9
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeee---ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 198 (279)
+-.+.+..+.+|++..++|.|+..|.|.++-+..+.+...... -..|...|++++|++++..+++|...|+|.+-.+
T Consensus 74 ~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L 153 (726)
T KOG3621|consen 74 GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL 153 (726)
T ss_pred CccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence 3556677788999999999999999999998876533222111 2346778999999999999999999999888776
Q ss_pred CC
Q 023642 199 GS 200 (279)
Q Consensus 199 ~~ 200 (279)
..
T Consensus 154 ~s 155 (726)
T KOG3621|consen 154 DS 155 (726)
T ss_pred ch
Confidence 65
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.83 Score=39.71 Aligned_cols=115 Identities=14% Similarity=0.202 Sum_probs=80.5
Q ss_pred eEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC---CCeEEEEECCCCc
Q 023642 127 AYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSGT 202 (279)
Q Consensus 127 V~~~~~spd~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i~i~d~~~~~ 202 (279)
-..+++++++..+ +....++.|.+.|..+......... +. ....++++|++..+..+.. ++++.+.|..+..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v--G~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV--GL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee--cc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 3567888888855 4455568999999877655554322 22 5778999999988776665 6889999998887
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec-CCCeEEEEECCCCeEE
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLS 262 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s-~d~~i~vwd~~~~~~~ 262 (279)
......... .+ ..++++|+|..++... .++.|.+.|..+....
T Consensus 152 ~~~~~~vG~----------------~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 152 VTATIPVGN----------------TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred EEEEEecCC----------------Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 654321110 13 7899999999666554 6889999997655444
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.59 Score=38.10 Aligned_cols=112 Identities=21% Similarity=0.168 Sum_probs=68.7
Q ss_pred CeEEEEECCCCCEEEEEe---CCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE-CCCC
Q 023642 126 RAYVSQFSADGSLFVAGF---QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD-VGSG 201 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d-~~~~ 201 (279)
.+.+.++++|++.++... ....+.++..... .... ..+ ..+....|++++...+....+...+++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~--~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPV--LTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceee--ccC--CccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 688999999999887655 2334555554433 2221 122 2688889999988877777677667763 3344
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec---CCCeEEEEEC
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDL 256 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s---~d~~i~vwd~ 256 (279)
......-. ... -...|..+.+||||..++.-. .++.|.+--+
T Consensus 99 ~~~~~~v~--------~~~-----~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 99 TGEPVEVD--------WPG-----LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred cceeEEec--------ccc-----cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 33211110 000 011799999999999887644 3466776654
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.032 Score=51.70 Aligned_cols=72 Identities=10% Similarity=0.062 Sum_probs=60.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 023642 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~ 199 (279)
-.+++++|+|..-.|+.|=.-|.+.+|...+.+.-. ....|..+|..+.|||+|..+.++..=|.+.+|.+.
T Consensus 60 ~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 60 VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eehhhhccChHHHHHhhccccceeEEEecCCceeee---eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 445779999998889999888999999987664322 245788999999999999999999999999999764
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.45 E-value=1 Score=37.80 Aligned_cols=136 Identities=16% Similarity=0.126 Sum_probs=77.2
Q ss_pred CCeEEEEECCCCCEEEEEeC-----C----CcEEEEEcC-CCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC-CCeE
Q 023642 125 SRAYVSQFSADGSLFVAGFQ-----A----SQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIV 193 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~-----d----~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i 193 (279)
...+.+.+.|+|.+.++... . ..=.+|-++ .+..... ...+-..-..++||||++.++.+.. .+.|
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l---~~~~~~~~NGla~SpDg~tly~aDT~~~~i 187 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL---LDDDLTIPNGLAFSPDGKTLYVADTPANRI 187 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe---ecCcEEecCceEECCCCCEEEEEeCCCCeE
Confidence 45677889999997776544 1 112344444 3433322 2333334578999999988776654 4778
Q ss_pred EEEECCC--CceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC-eEEEEECCCCeEEEEEeCCCc
Q 023642 194 HIVDVGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 194 ~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~-~i~vwd~~~~~~~~~~~~h~~ 270 (279)
.-|++.. +..... ....+... ..+..-.++...+|.+.+.+..++ .|.+|+.. |+.+..+.-...
T Consensus 188 ~r~~~d~~~g~~~~~-------~~~~~~~~----~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~ 255 (307)
T COG3386 188 HRYDLDPATGPIGGR-------RGFVDFDE----EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK 255 (307)
T ss_pred EEEecCcccCccCCc-------ceEEEccC----CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC
Confidence 8887753 221100 00001000 112444566677777765444443 78888887 888888876644
Q ss_pred ceeEE
Q 023642 271 NIALW 275 (279)
Q Consensus 271 ~v~~v 275 (279)
.+.++
T Consensus 256 ~~t~~ 260 (307)
T COG3386 256 RPTNP 260 (307)
T ss_pred CCccc
Confidence 44443
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.1 Score=29.42 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=25.2
Q ss_pred cEEEEEEecCC---CEEEEecCCCeEEEEECCC
Q 023642 229 GIFSLKFSTDG---RELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 229 ~v~~~~~sp~g---~~l~t~s~d~~i~vwd~~~ 258 (279)
.+.+++|+|.. .+|+.+-.-+.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 68999999854 4888877788999999995
|
It contains a characteristic DLL sequence motif. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.4 Score=40.20 Aligned_cols=99 Identities=19% Similarity=0.108 Sum_probs=60.1
Q ss_pred eeeeecCCC-CceeeCCCCCeEEEEECCCCCEEEEE-eCCCcEEEEEcCC--CeEE--eeeeeccCCCcceEEEEECCCC
Q 023642 108 LSRYLPVNG-PWPVDQTTSRAYVSQFSADGSLFVAG-FQASQIRIYDVER--GWKI--QKDILAKSLRWTVTDTSLSPDQ 181 (279)
Q Consensus 108 ~~~~~~~~~-~~~l~~h~~~V~~~~~spd~~~l~s~-~~d~~i~iwd~~~--~~~~--~~~~~~~~~~~~v~~~~~sp~~ 181 (279)
+|++.+... ...+..+-..-+.++||||++.|..+ +..+.|.-|+++. +... .....+....+..=.++...+|
T Consensus 145 lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG 224 (307)
T COG3386 145 LYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG 224 (307)
T ss_pred EEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC
Confidence 555554322 23345556667889999999887766 4457888888763 2111 1112222334455567777778
Q ss_pred CEEEEEeCCC-eEEEEECCCCceeeee
Q 023642 182 RHLVYASMSP-IVHIVDVGSGTMESLA 207 (279)
Q Consensus 182 ~~l~~~~~d~-~i~i~d~~~~~~~~~~ 207 (279)
.+.+++..+| .|.+|+.. ++.....
T Consensus 225 ~lw~~a~~~g~~v~~~~pd-G~l~~~i 250 (307)
T COG3386 225 NLWVAAVWGGGRVVRFNPD-GKLLGEI 250 (307)
T ss_pred CEEEecccCCceEEEECCC-CcEEEEE
Confidence 8776555554 89999888 6654433
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.023 Score=52.80 Aligned_cols=87 Identities=20% Similarity=0.163 Sum_probs=68.2
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEE
Q 023642 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (279)
Q Consensus 165 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t 244 (279)
++.|....++++|+-+.++|+.|+..|.|++|++.+|...... ++|.+.|+-+.-+-||..+++
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~----------------ncH~SavT~vePs~dgs~~Lt 1160 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV----------------NCHQSAVTLVEPSVDGSTQLT 1160 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc----------------cccccccccccccCCcceeee
Confidence 5677888999999999999999999999999999998864322 137779999998989998877
Q ss_pred ecCCC--eEEEEECCC-CeEEEEEeC
Q 023642 245 GSSDD--CIYVYDLEA-NKLSLRILA 267 (279)
Q Consensus 245 ~s~d~--~i~vwd~~~-~~~~~~~~~ 267 (279)
.+.-. ...+|++.+ +.+.+++.+
T Consensus 1161 sss~S~PlsaLW~~~s~~~~~Hsf~e 1186 (1516)
T KOG1832|consen 1161 SSSSSSPLSALWDASSTGGPRHSFDE 1186 (1516)
T ss_pred eccccCchHHHhccccccCccccccc
Confidence 65432 577999864 556666553
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.42 Score=40.39 Aligned_cols=115 Identities=12% Similarity=0.196 Sum_probs=70.8
Q ss_pred eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-EEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 023642 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 121 ~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~ 199 (279)
....++|++++-- ++. |+.+.. +.|.+|++...+ ...... . .....+.++... +++|+.|..-..+.++...
T Consensus 85 ~~~~g~V~ai~~~-~~~-lv~~~g-~~l~v~~l~~~~~l~~~~~-~-~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 85 TEVKGPVTAICSF-NGR-LVVAVG-NKLYVYDLDNSKTLLKKAF-Y-DSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEESS-EEEEEEE-TTE-EEEEET-TEEEEEEEETTSSEEEEEE-E--BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred EeecCcceEhhhh-CCE-EEEeec-CEEEEEEccCcccchhhhe-e-cceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 3457889998755 344 544443 799999998876 333321 1 222246665554 5699999988878877443
Q ss_pred C--CceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 200 S--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 200 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
. .+...+.+- . ...+++++.|-+++..++.+..++.+.++...
T Consensus 158 ~~~~~l~~va~d-~--------------~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 158 EENNKLILVARD-Y--------------QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TTTE-EEEEEEE-S--------------S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccCCEEEEEEec-C--------------CCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 3 222211110 0 22378999998777788899999999999876
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=2.7 Score=39.64 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=48.3
Q ss_pred CCeEEEEECCCCCEEEEEeC-----CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC------CeE
Q 023642 125 SRAYVSQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIV 193 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------~~i 193 (279)
-.+..+.||||+++|+.+.. .-.|++.|+.+|..+...+ .. .-..++|.+|++.|+....+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DN---VEPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cC---cceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 34667889999998876633 2368899998885333211 11 11458999999877765532 357
Q ss_pred EEEECCCC
Q 023642 194 HIVDVGSG 201 (279)
Q Consensus 194 ~i~d~~~~ 201 (279)
+.+++.++
T Consensus 202 ~~h~lgt~ 209 (686)
T PRK10115 202 WRHTIGTP 209 (686)
T ss_pred EEEECCCC
Confidence 77888776
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.20 E-value=1 Score=37.06 Aligned_cols=130 Identities=10% Similarity=0.091 Sum_probs=83.3
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~ 199 (279)
+.+-...|.++.|+|+.+.|++..+...-.||=...|+.+... .+.+.. ....+.+.-++++.++-=.+..+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti-PL~g~~-DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI-PLTGFS-DPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe-cccccC-ChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 4556677999999999999988887777777776778777654 334433 36678888888888887788889988877
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
........... .+.+... .+ .+..--.++|.|....|..+=+-.-+.||.+.
T Consensus 159 ~~t~~~~~~~~----~i~L~~~-~k-~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 159 ADTTVISAKVQ----KIPLGTT-NK-KNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred CCccEEeccce----EEecccc-CC-CCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 65432111111 0111111 10 12345678888887777766655545555443
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.1 Score=29.47 Aligned_cols=32 Identities=34% Similarity=0.388 Sum_probs=26.3
Q ss_pred cceEEEEECCCC---CEEEEEeCCCeEEEEECCCC
Q 023642 170 WTVTDTSLSPDQ---RHLVYASMSPIVHIVDVGSG 201 (279)
Q Consensus 170 ~~v~~~~~sp~~---~~l~~~~~d~~i~i~d~~~~ 201 (279)
+.|++++|+|.. .+|+.+-.-+.+.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 368999999854 48888888899999999963
|
It contains a characteristic DLL sequence motif. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.71 Score=40.26 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=62.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccc
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 214 (279)
++..++.++.++.+..+|..+|+.+....... . ....+... .+..|+.++.+|.+.++|..+|+.........
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~--- 365 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLL-H-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS--- 365 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccC-C-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC---
Confidence 35567777889999999999987655421111 1 11111122 25677888999999999999998754332210
Q ss_pred eeEEeeCCCCCccccEE-EEEEecCCCEEEEecCCCeEEEEEC
Q 023642 215 GLDFSAADDGGYSFGIF-SLKFSTDGRELVAGSSDDCIYVYDL 256 (279)
Q Consensus 215 ~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~t~s~d~~i~vwd~ 256 (279)
..+. ...+ .+..|+.++.||.|+.++.
T Consensus 366 -------------~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 366 -------------SGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred -------------CcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 0111 1122 2447778899999988765
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.17 E-value=1.4 Score=36.81 Aligned_cols=113 Identities=15% Similarity=0.217 Sum_probs=59.3
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 198 (279)
...-.+.+..+.-++||++++++..-....-||.-.. ...+. +.....|..+.|.|++.+.+.+ ..+.++.=+.
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~ 214 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD 214 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc----cCccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence 3445578899999999999988877666667875532 33332 3345579999999998876654 7788888762
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d 248 (279)
..... ......... . .....+..++|.+++...++|+..
T Consensus 215 ~~~~~-~w~~~~~~~--------~--~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 215 PDDGE-TWSEPIIPI--------K--TNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp TTEEE-EE---B-TT--------S--S--S-EEEEEESSSS-EEEEESTT
T ss_pred CCCcc-ccccccCCc--------c--cCceeeEEEEecCCCCEEEEeCCc
Confidence 21111 111100000 0 011258999999998888776644
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.1 Score=36.46 Aligned_cols=134 Identities=10% Similarity=0.153 Sum_probs=72.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe------EEeeee--eccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW------KIQKDI--LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~------~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
.+..-.+++..++.++++.-.++.+.++++.... ...... ....++..+..++|.|.++.|+.+-...-..|
T Consensus 64 ~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l 143 (248)
T PF06977_consen 64 FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRL 143 (248)
T ss_dssp -SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEE
T ss_pred CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhh
Confidence 4667888888888777776678999999884321 111111 11234556999999998877777766666667
Q ss_pred EECCC---CceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 196 VDVGS---GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 196 ~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
|.+.. ............. . .......+.+++++|. +.+++.+..+..|..+| .+|+.+..+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~ 209 (248)
T PF06977_consen 144 YEVNGFPGGFDLFVSDDQDLD------D--DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS 209 (248)
T ss_dssp EEEESTT-SS--EEEE-HHHH---------HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred EEEccccCccceeeccccccc------c--ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence 66654 1111111100000 0 0112336889999997 55666777788999999 5677776654
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.94 E-value=1.2 Score=35.37 Aligned_cols=142 Identities=13% Similarity=0.132 Sum_probs=80.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCC---------CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEE-EEEeCCCeE
Q 023642 124 TSRAYVSQFSADGSLFVAGFQA---------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIV 193 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~i 193 (279)
..+.+.-..+|+|++++-.-.| +.++.|-+.-. +... .+.-+--..++|+.+.+.+ ++-+.+-.|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--v~~i---~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--VELI---WNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC--ceee---ehhccCCccccccccCcEEEEEccCceEE
Confidence 4556666789999996543222 34444443321 1111 1111123567888777655 455667788
Q ss_pred EEEE--CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcc
Q 023642 194 HIVD--VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVN 271 (279)
Q Consensus 194 ~i~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~ 271 (279)
.-|| ..+|..............-.+.+- ..-.++...+|.+.++.-..++|...|..+|+.++.+.-....
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~-------~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~q 255 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESL-------EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQ 255 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCC-------CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCc
Confidence 7777 666664211111000000001000 1122344557888887777889999999999999999888888
Q ss_pred eeEEEe
Q 023642 272 IALWIT 277 (279)
Q Consensus 272 v~~v~~ 277 (279)
|+|++.
T Consensus 256 itsccF 261 (310)
T KOG4499|consen 256 ITSCCF 261 (310)
T ss_pred eEEEEe
Confidence 887753
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.54 Score=40.00 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=34.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE---Eeee-eeccCCCcceEEEEECCC
Q 023642 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWK---IQKD-ILAKSLRWTVTDTSLSPD 180 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~---~~~~-~~~~~~~~~v~~~~~sp~ 180 (279)
.-.+|+|.|||++|++ ...|.|++++ ..+.. +... ............++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 3578999999987775 5589999999 44433 1111 112233456899999995
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.92 E-value=1.7 Score=36.79 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=52.3
Q ss_pred EEEECCCCCEEEEEe----------CCCcEEEEEcCCCeEEeeeeeccCCC----cceEEEEECCCCCEEEEEeC--CCe
Q 023642 129 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSLR----WTVTDTSLSPDQRHLVYASM--SPI 192 (279)
Q Consensus 129 ~~~~spd~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~~--d~~ 192 (279)
.+..+||++.+++++ ..-.|.+||..+-.....+.....++ -....+++++|+++++.... ...
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 367899999988753 23379999999876665544333221 12345689999999887664 457
Q ss_pred EEEEECCCCceeeee
Q 023642 193 VHIVDVGSGTMESLA 207 (279)
Q Consensus 193 i~i~d~~~~~~~~~~ 207 (279)
|.|.|+..++.....
T Consensus 120 VtVVDl~~~kvv~ei 134 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEI 134 (342)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEECCCCceeeee
Confidence 999999998875433
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.86 E-value=2.4 Score=39.99 Aligned_cols=91 Identities=19% Similarity=0.256 Sum_probs=55.4
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEECCC--Cc--------eeeeeccccccceeEEeeCCCCCccccEEEEEEecC-
Q 023642 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGS--GT--------MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD- 238 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~--~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~- 238 (279)
-.|..+.++|+|++++..+..+. .|..+.. |. .....+.... ....|. ......|..+.|+|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~----~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFT----SNSSLEIKQVRWHPWS 158 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEe-chhhcc----CCCCceEEEEEEcCCC
Confidence 36899999999999998888664 4444421 11 1000000000 000111 113457999999996
Q ss_pred --CCEEEEecCCCeEEEEECCCC-eEEEEEe
Q 023642 239 --GRELVAGSSDDCIYVYDLEAN-KLSLRIL 266 (279)
Q Consensus 239 --g~~l~t~s~d~~i~vwd~~~~-~~~~~~~ 266 (279)
+..|+.-..|+++++||+... .+.+++.
T Consensus 159 ~~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 159 ESDSHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CCCCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 578999999999999999753 3444443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.68 E-value=1.1 Score=39.86 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=53.6
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEC---------CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCC--
Q 023642 171 TVTDTSLSPDQRHLVYASMSPIVHIVDV---------GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-- 239 (279)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-- 239 (279)
.|..+..+|.|..++-.+.+|.+.++=. +.|+.....+....... .|... -.=.+..++|+|+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~-~ftss----~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER-FFTSS----TSLTLKQAAWHPSSIL 179 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce-eeccC----CceeeeeccccCCccC
Confidence 5778889999999999999987666532 22221111111111111 11111 11246778999975
Q ss_pred -CEEEEecCCCeEEEEECCCCeEE
Q 023642 240 -RELVAGSSDDCIYVYDLEANKLS 262 (279)
Q Consensus 240 -~~l~t~s~d~~i~vwd~~~~~~~ 262 (279)
..|+.-+.|..|++||+.....+
T Consensus 180 D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred CceEEEEecCcEEEEEecCCcchh
Confidence 67888888999999999765544
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=94.66 E-value=1.3 Score=40.01 Aligned_cols=114 Identities=16% Similarity=0.086 Sum_probs=68.5
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEE------------------eCCCeEEEEECC
Q 023642 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA------------------SMSPIVHIVDVG 199 (279)
Q Consensus 138 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~------------------~~d~~i~i~d~~ 199 (279)
.++.++.+|.+...|..+|+.+...... ...++.+| ..++.+ ..++.+.-.|+.
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~ 374 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK 374 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCC
Confidence 5777888999999999999877653221 11233444 233222 235788888999
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
+|+.+.............+ +. . .....+. ..+..|+.++.|+.|+.+|.++|+.+-+++-
T Consensus 375 tG~~~W~~~~~~~~~~~~~---g~--~-~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 375 TGKVVWEKREGTIRDSWNI---GF--P-HWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CCcEeeEeeCCcccccccc---CC--c-ccCcceE--ecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 9987543332210000000 00 0 0001122 2467888888999999999999998877764
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.69 Score=43.70 Aligned_cols=125 Identities=14% Similarity=0.155 Sum_probs=71.7
Q ss_pred CCCEEEEE-eCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC-------CCEEEEEeCCCeEEEEECCCCceeee
Q 023642 135 DGSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-------QRHLVYASMSPIVHIVDVGSGTMESL 206 (279)
Q Consensus 135 d~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-------~~~l~~~~~d~~i~i~d~~~~~~~~~ 206 (279)
+.++|+.- .....|+-.|+.+|+.+..... ....+| ..+.|+ ....+.|-.+..+..||.+-......
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~--~~~~~v--~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v 567 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKV--HDDIPV--VDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV 567 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeec--CCCcce--eEecccccccccCCCceEEEECCCceEEeccCCCCCcee
Confidence 34444433 3567899999999977665321 222234 345553 23456677788899999986431111
Q ss_pred eccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
... ...|. ......|++-+.+| +||.|+.+|.||+||--....-..|++-..+|..|
T Consensus 568 ~~~-----~k~Y~------~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~i 624 (794)
T PF08553_consen 568 DSQ-----SKQYS------SKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGI 624 (794)
T ss_pred ecc-----ccccc------cCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEE
Confidence 000 00111 11245677766666 78899999999999954322233344555566554
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.58 E-value=2.1 Score=34.89 Aligned_cols=112 Identities=17% Similarity=0.179 Sum_probs=65.1
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEE-cCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe---CCCeEEEEECCC-
Q 023642 126 RAYVSQFSADGSLFVAGFQASQIRIYD-VERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS---MSPIVHIVDVGS- 200 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~i~i~d~~~- 200 (279)
.+....|++++...+....+...+++. ...+...............|..+.+||||..++... .++.+.+--+..
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 778889999987777766666666663 333322221111122222799999999999877655 346677665432
Q ss_pred --CceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC
Q 023642 201 --GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (279)
Q Consensus 201 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~ 247 (279)
+....+..... ... .....+..+.|.+++.+++.+..
T Consensus 147 ~~g~~~~l~~~~~------~~~----~~~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 147 GDGVPRRLTGPRR------VAP----PLLSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred CCCCcceeccceE------ecc----cccCcceeeeecCCCEEEEEeCC
Confidence 20111111100 000 01237899999999988776554
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=94.46 E-value=3 Score=37.47 Aligned_cols=137 Identities=17% Similarity=0.125 Sum_probs=69.4
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC-------------CCeEEEE
Q 023642 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-------------SPIVHIV 196 (279)
Q Consensus 130 ~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-------------d~~i~i~ 196 (279)
+...++|.+++... ..+..+|+. |+.+.......+....-+++...|+|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 66778999887665 788888886 4444332221111112356778899999887771 1236666
Q ss_pred ECCCCceeeeeccccccceeEE-----------eeCCCCCccccEEEEEEec-CCCEEEEecCCCeEEEEECCCCeEEEE
Q 023642 197 DVGSGTMESLANVTEIHDGLDF-----------SAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLR 264 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~v~~~~~sp-~g~~l~t~s~d~~i~vwd~~~~~~~~~ 264 (279)
| .+|+................ ........-..++++.+.+ ++.+++++-.-..|...|.++++..-.
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 7 77777554443332211111 0111111224588999999 555555555556899999999988888
Q ss_pred EeCCCc
Q 023642 265 ILAHTV 270 (279)
Q Consensus 265 ~~~h~~ 270 (279)
+-.|..
T Consensus 309 lg~~~~ 314 (477)
T PF05935_consen 309 LGPPGG 314 (477)
T ss_dssp ES-STT
T ss_pred eCCCCC
Confidence 766543
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.51 Score=41.76 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=56.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee
Q 023642 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~ 204 (279)
+.-...+|.+. ..+|+-...++|.|+.--.......+ .. .. .+..+-. |..|+..+.+ .|.+||..+++..
T Consensus 69 G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k~i-~~-~~--~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i 139 (443)
T PF04053_consen 69 GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVKSI-KL-PF--SVEKIFG---GNLLGVKSSD-FICFYDWETGKLI 139 (443)
T ss_dssp EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT-------SS---EEEEE----SSSEEEEETT-EEEEE-TTT--EE
T ss_pred CceeEEEEecC-ccEEEEECCCeEEEEEcCccccceEE-cC-Cc--ccceEEc---CcEEEEECCC-CEEEEEhhHccee
Confidence 44556789984 44666666889999732222111111 11 11 2333322 8888777665 8999999999875
Q ss_pred eeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
..... ..|..+.|+++|.+++-.+.+ .+++++..
T Consensus 140 ~~i~v------------------~~vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 140 RRIDV------------------SAVKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp EEESS-------------------E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred eEEec------------------CCCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 54432 147899999999999988755 57777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.86 Score=39.85 Aligned_cols=83 Identities=17% Similarity=0.192 Sum_probs=53.5
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcc----eEEEEE---------C----CC-C
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT----VTDTSL---------S----PD-Q 181 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----v~~~~~---------s----p~-~ 181 (279)
+....-.+.+++.+|++++.++...-|+|.++|+.++..++.. ++.++. +....- + +. .
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW---KGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW---KGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh---ccCccceEEEEEeecccccccccccccCCCCcce
Confidence 5556677899999999999999888899999999987544321 222110 000000 0 00 1
Q ss_pred CE-EEEEeCCCeEEEEECCCCceee
Q 023642 182 RH-LVYASMSPIVHIVDVGSGTMES 205 (279)
Q Consensus 182 ~~-l~~~~~d~~i~i~d~~~~~~~~ 205 (279)
.+ ++.+-.-|.+-||.++.|....
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv~ 404 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRVA 404 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEEE
Confidence 12 3456678899999999887643
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.27 E-value=2.5 Score=34.47 Aligned_cols=120 Identities=18% Similarity=0.120 Sum_probs=72.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCC--cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEE-EeCCCeEEEEECCCC
Q 023642 125 SRAYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSG 201 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~i~i~d~~~~ 201 (279)
.-...+.|..++.++-+.+.-| .|+.+|+.+++........... .-..++... ..|.. .=.++...+||..+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~--FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY--FGEGITILG--DKLYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEET--TEEEEEESSSSEEEEEETTTT
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc--cceeEEEEC--CEEEEEEecCCeEEEEccccc
Confidence 3456778878888888888777 7999999999766553322211 223444432 33433 346789999999987
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
+....... . +.=+.++ .|++.|+.+.....|+++|-.+-+...++..
T Consensus 121 ~~~~~~~y---------~--------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 121 KKIGTFPY---------P--------GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp EEEEEEE----------S--------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred eEEEEEec---------C--------CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEE
Confidence 66433221 1 1224455 5677777776677899999888776666653
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=94.16 E-value=3.6 Score=35.95 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=53.0
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC------CCcceEEEEECC-----CC---CEEE
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS------LRWTVTDTSLSP-----DQ---RHLV 185 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~~v~~~~~sp-----~~---~~l~ 185 (279)
+....++|++++.| |=-+++.|.++|.+.|.|++....+... .... ....|+++.|.. |+ -.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 44558999999997 6679999999999999999877655542 2222 344678888863 33 3678
Q ss_pred EEeCCCeEEEEECC
Q 023642 186 YASMSPIVHIVDVG 199 (279)
Q Consensus 186 ~~~~d~~i~i~d~~ 199 (279)
+|...|.+.+|.+.
T Consensus 160 vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 160 VGTNSGNVLTFKIL 173 (395)
T ss_dssp EEETTSEEEEEEEE
T ss_pred EEeCCCCEEEEEEe
Confidence 88888999999764
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.24 Score=42.50 Aligned_cols=67 Identities=24% Similarity=0.411 Sum_probs=47.9
Q ss_pred CCCCCEEEEEe---------CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC
Q 023642 178 SPDQRHLVYAS---------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 178 sp~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d 248 (279)
|||+++++... ..+.+.+||+.+++...+... ...+....|||+|+.++... +
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-----------------~~~~~~~~~sP~g~~~~~v~-~ 62 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-----------------PPKLQDAKWSPDGKYIAFVR-D 62 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-----------------ETTBSEEEE-SSSTEEEEEE-T
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-----------------ccccccceeecCCCeeEEEe-c
Confidence 57888766632 246799999999887654432 12677899999999998775 5
Q ss_pred CeEEEEECCCCeEE
Q 023642 249 DCIYVYDLEANKLS 262 (279)
Q Consensus 249 ~~i~vwd~~~~~~~ 262 (279)
+.|++++..++...
T Consensus 63 ~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 63 NNLYLRDLATGQET 76 (353)
T ss_dssp TEEEEESSTTSEEE
T ss_pred CceEEEECCCCCeE
Confidence 78999999888554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.02 E-value=2.5 Score=33.69 Aligned_cols=135 Identities=14% Similarity=0.084 Sum_probs=76.1
Q ss_pred hccccCccCCCCeeecc---c-c------ceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEE--
Q 023642 86 LAGREGNYSGRGRFSAA---D-C------CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYD-- 152 (279)
Q Consensus 86 ~~~~~~~~~~~~~~~~~---d-~------~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l-~s~~~d~~i~iwd-- 152 (279)
.+-.+....|+|+|.+. + . .-.+..+........+...-.--+.++|+.|.+.+ ++-+.+-.|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd 188 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYD 188 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecC
Confidence 34455667888887321 0 0 00112222333333334444445678999887766 4556777887787
Q ss_pred cCCCeEEee--eeeccC---CCc-ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCc
Q 023642 153 VERGWKIQK--DILAKS---LRW-TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGY 226 (279)
Q Consensus 153 ~~~~~~~~~--~~~~~~---~~~-~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (279)
..+|..... ++.++. ... ..-.++..-+|.+.+++-..++|..+|..+|+...-....
T Consensus 189 ~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP---------------- 252 (310)
T KOG4499|consen 189 CPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP---------------- 252 (310)
T ss_pred CCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC----------------
Confidence 556632211 111111 111 1223445557788888888889999999999975443332
Q ss_pred cccEEEEEEe
Q 023642 227 SFGIFSLKFS 236 (279)
Q Consensus 227 ~~~v~~~~~s 236 (279)
...|++++|-
T Consensus 253 t~qitsccFg 262 (310)
T KOG4499|consen 253 TPQITSCCFG 262 (310)
T ss_pred CCceEEEEec
Confidence 1278999996
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.95 Score=36.00 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=54.1
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCCCceeeee-ccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLA-NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 177 ~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
+..++.+|++...+|.+++||+.+++..... .............. .....|..+.++.+|.-+++-+ ++..+.||
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~---~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDK---SSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccC---CCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 4457889999999999999999998763222 11111110000000 2334789999999998888766 46789998
Q ss_pred CCCCeEEE
Q 023642 256 LEANKLSL 263 (279)
Q Consensus 256 ~~~~~~~~ 263 (279)
..-+..+.
T Consensus 94 ~~L~~W~~ 101 (219)
T PF07569_consen 94 PDLGCWIR 101 (219)
T ss_pred cccceeEE
Confidence 87555444
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.049 Score=50.82 Aligned_cols=133 Identities=14% Similarity=0.107 Sum_probs=78.6
Q ss_pred ceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcC--CCeEEee--eeeccCCCcceEEEEECC---CCCEEEEEeC
Q 023642 118 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVE--RGWKIQK--DILAKSLRWTVTDTSLSP---DQRHLVYASM 189 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~--~~~~~~~--~~~~~~~~~~v~~~~~sp---~~~~l~~~~~ 189 (279)
..+++..+.|-.++|.. +...+. -.-|.+.|||++ .|+.... +........++.-+.|.| +.-++.++-.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 34678889999888854 322332 333688899886 3422111 111122333445555555 6677888888
Q ss_pred CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEE-----------EEEecCCCEEEEecCCCeEEEEECC-
Q 023642 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS-----------LKFSTDGRELVAGSSDDCIYVYDLE- 257 (279)
Q Consensus 190 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----------~~~sp~g~~l~t~s~d~~i~vwd~~- 257 (279)
++.+++......... . |.+ |..++.. -..||||+.|++++.||.+++|.+-
T Consensus 204 ~~~i~lL~~~ra~~~----l--------~rs-----Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 204 GGEIRLLNINRALRS----L--------FRS-----HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred CCceeEeeechHHHH----H--------HHh-----cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 888888766543321 1 111 2112222 2379999999999999988888653
Q ss_pred ----CCeEEEEEeCCC
Q 023642 258 ----ANKLSLRILAHT 269 (279)
Q Consensus 258 ----~~~~~~~~~~h~ 269 (279)
.-.|+...+.|.
T Consensus 267 ~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 267 TGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eccccHhhhhccCCCC
Confidence 334666666666
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=93.86 E-value=2.4 Score=34.28 Aligned_cols=126 Identities=18% Similarity=0.167 Sum_probs=67.4
Q ss_pred EEECCCCCEEEEEeC-C--CcEEEEEcCC----CeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCC-eEEEEECCCC
Q 023642 130 SQFSADGSLFVAGFQ-A--SQIRIYDVER----GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-IVHIVDVGSG 201 (279)
Q Consensus 130 ~~~spd~~~l~s~~~-d--~~i~iwd~~~----~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~i~i~d~~~~ 201 (279)
-++-|||++|.+|+. + ..+++++... .............++.-+ +..-|||+.|+.|+.+. +.-+|.-...
T Consensus 72 g~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT-~~~L~DG~vlIvGG~~~~t~E~~P~~~~ 150 (243)
T PF07250_consen 72 GAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPT-ATTLPDGRVLIVGGSNNPTYEFWPPKGP 150 (243)
T ss_pred cCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcccc-ceECCCCCEEEEeCcCCCcccccCCccC
Confidence 357889999998865 2 3688888654 111111111223333333 44557999998888763 2333333211
Q ss_pred c--eeeeeccccccceeEEeeCCC-CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 202 T--MESLANVTEIHDGLDFSAADD-GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 202 ~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
. ...+ .|..... ......---+...|+|+.|+.+..+. .|||..+.+.+..++.-
T Consensus 151 ~~~~~~~----------~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 151 GPGPVTL----------PFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLPDL 208 (243)
T ss_pred CCCceee----------ecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCCCC
Confidence 1 1111 0100000 00001122355679999999888654 67798888777777643
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.71 E-value=4.2 Score=35.14 Aligned_cols=110 Identities=20% Similarity=0.152 Sum_probs=57.4
Q ss_pred CCeEEEEECCCCCEEEEEe-----------CCC-cEEEEEcCC--CeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC
Q 023642 125 SRAYVSQFSADGSLFVAGF-----------QAS-QIRIYDVER--GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~-----------~d~-~i~iwd~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 190 (279)
.....++|.++|+++++-. ..+ +|.+++-.. |..- +...+...-.....+++.+++ .++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d-~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD-KSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc-eeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 4556789999999887753 223 777776532 3221 111222222346889999998 444 4444
Q ss_pred CeEEEEECCCC-----ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 191 PIVHIVDVGSG-----TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 191 ~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
...++.|.... +...+... |.... ..+......++|.|||.+.++-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~--------~~~~~-~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSG--------FGGQI-NNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEc--------cCCCC-CcccccccCceECCCCCEEEecc
Confidence 43334454321 11111110 11100 00123577899999998766544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=93.65 E-value=5.5 Score=36.32 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=25.9
Q ss_pred CCCEEEEecCCCeEEEEECCCCeEEEEEeCCC
Q 023642 238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (279)
Q Consensus 238 ~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~ 269 (279)
.+..++.++.++.++.+|.++|+.+-+++-..
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 45566678889999999999999998887543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.96 Score=35.99 Aligned_cols=74 Identities=16% Similarity=0.189 Sum_probs=53.8
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee----ecc-------CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 023642 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDI----LAK-------SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (279)
Q Consensus 132 ~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~-------~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~ 200 (279)
+..++.+|++-+.+|.+++||+.+++.+.... .+. .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 34578899999999999999999886654331 111 2445789999998888877765 47789998876
Q ss_pred Cceeee
Q 023642 201 GTMESL 206 (279)
Q Consensus 201 ~~~~~~ 206 (279)
+....+
T Consensus 97 ~~W~~v 102 (219)
T PF07569_consen 97 GCWIRV 102 (219)
T ss_pred ceeEEe
Confidence 665443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=93.32 E-value=5.3 Score=35.14 Aligned_cols=110 Identities=9% Similarity=0.067 Sum_probs=63.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
.+++..+++||+++++|.-..+|.+.+.+.+-.+.....- .+-......+.|+-+...++.- ...+.++....
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~--~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~--- 288 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD--TDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPDG--- 288 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee--cCcCCCCcEEEEECCCcEEEEe--CCEEEEECCCC---
Confidence 3689999999999999999999999998876554443321 1222345566665443222211 22233322111
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
..+.|..++..++..-.|| ++|..-...+.+++++..
T Consensus 289 ---------------------------~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~~ 325 (410)
T PF04841_consen 289 ---------------------------DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPDS 325 (410)
T ss_pred ---------------------------CceEEeccCceEEeccCCc-eEEEeCCceEEEEECCHH
Confidence 1234444555444444565 888877767777776543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.14 E-value=3.8 Score=33.27 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=53.7
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeee
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~ 206 (279)
-|++++.|...+.+.+.+..+|.....+..+.... ......+++..|..++.|+..+..|.++..+...
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk---~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK---VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc---cceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 46789999999999999999997666654433321 2334678999999999999999999998776543
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=93.03 E-value=3.2 Score=35.00 Aligned_cols=97 Identities=6% Similarity=-0.075 Sum_probs=60.4
Q ss_pred eccccceEeeeeecCCCCceeeCC--CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-CeEEeeeeeccCCCcceEEEE
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQT--TSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTS 176 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h--~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~ 176 (279)
.+.+..+.++++...........+ ...+.++... +++++.|.....+.++..+. +..+..... ......++++.
T Consensus 103 ~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~ 179 (321)
T PF03178_consen 103 VAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAE 179 (321)
T ss_dssp EEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEE
T ss_pred EeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEE
Confidence 456677777777766622222222 2355555544 56999999888888875543 322322211 12234688999
Q ss_pred ECCCCCEEEEEeCCCeEEEEECC
Q 023642 177 LSPDQRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 177 ~sp~~~~l~~~~~d~~i~i~d~~ 199 (279)
|-+++..++.+..+|.+.++...
T Consensus 180 ~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 180 FLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EE-SSSEEEEEETTSEEEEEEE-
T ss_pred EecCCcEEEEEcCCCeEEEEEEC
Confidence 98777899999999999998875
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.67 Score=41.09 Aligned_cols=126 Identities=17% Similarity=0.226 Sum_probs=71.2
Q ss_pred CCCEE-EEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCC-------EEEEEeCCCeEEEEECCCCceeee
Q 023642 135 DGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-------HLVYASMSPIVHIVDVGSGTMESL 206 (279)
Q Consensus 135 d~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-------~l~~~~~d~~i~i~d~~~~~~~~~ 206 (279)
+.++| .++.....|+-.|+.+|+.+..- .....|.-+.+.|+.+ .-+.|-.|..|+-||.+-.....+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEW----k~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEW----KFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEe----eccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 44444 44555678888999999766542 2222377778888753 223455677899999873221101
Q ss_pred eccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
.... +-.|.... .-.|.+-..+| ++|.||.+|.|++||.-....-.-++|-.++|..|
T Consensus 420 -~~~q---~kqy~~k~------nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 420 -AVVQ---SKQYSTKN------NFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred -eeee---cccccccc------ccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeE
Confidence 0101 11121111 23444444454 78899999999999973222333445555555544
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=92.89 E-value=3 Score=36.53 Aligned_cols=101 Identities=15% Similarity=0.063 Sum_probs=59.0
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCcc--ccEEEEEEecC-CCEE
Q 023642 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYS--FGIFSLKFSTD-GREL 242 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~-g~~l 242 (279)
......+.++..+|++++.++...-|.|.++|+.++....+.+--+.. .+.|.......+. ..-....-.+. ..+|
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA-qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA-QCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc-eEEEEEeecccccccccccccCCCCcceEEE
Confidence 344446889999999999999888899999999998875443321111 1111111110000 00000000001 1233
Q ss_pred E-EecCCCeEEEEECCCCeEEEEEeC
Q 023642 243 V-AGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 243 ~-t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
+ -+-.-|.|-||.+++|..+..+..
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEe
Confidence 3 456678999999999999888864
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.85 E-value=3.5 Score=36.83 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=66.2
Q ss_pred eEEEEECCCCC--EE-----EEEeCCCcEEEEEcCCCeEEeeeeeccCCC----cceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 127 AYVSQFSADGS--LF-----VAGFQASQIRIYDVERGWKIQKDILAKSLR----WTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 127 V~~~~~spd~~--~l-----~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
|+-+.+.|+.. .| +.|-.|+.|+-||.+-... .++.....|. ....|.+-. ..-+|+.|+.+|.|++
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-~kl~~~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRL 455 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-NKLAVVQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRL 455 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCc-ceeeeeeccccccccccceeeec-CCceEEEeecCCcEEe
Confidence 77777888654 22 3455678999999873211 0111112221 122333333 3448999999999999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
||-...+.... +.+-+ .+|..+..+.+|++++..+ +..+.+.++.
T Consensus 456 Ydri~~~AKTA-----------lPgLG-----~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 456 YDRIGRRAKTA-----------LPGLG-----DAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ehhhhhhhhhc-----------ccccC-----CceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 99833222111 11222 3889999999999987544 5666666653
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.71 E-value=5.6 Score=33.74 Aligned_cols=172 Identities=17% Similarity=0.107 Sum_probs=94.0
Q ss_pred eeeccccceEeeeeecCCCCceeeCCCCCeEEE-------EECC-CCCEEEEEeCCCcEEEEEcC-CCeEEeee-eeccC
Q 023642 98 RFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVS-------QFSA-DGSLFVAGFQASQIRIYDVE-RGWKIQKD-ILAKS 167 (279)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~-------~~sp-d~~~l~s~~~d~~i~iwd~~-~~~~~~~~-~~~~~ 167 (279)
.++..++.+.++++.|.....++.-...+|... ..-| ..+-|.+-+.||++.-..++ .|+...+. ..+..
T Consensus 101 ~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~ 180 (342)
T PF06433_consen 101 ALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDP 180 (342)
T ss_dssp EE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESST
T ss_pred EEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCC
Confidence 345677778889988877766665555444322 1123 22567788999999999987 45443222 12222
Q ss_pred CCcce-EEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecccc---ccceeEEeeCCC--------------------
Q 023642 168 LRWTV-TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTE---IHDGLDFSAADD-------------------- 223 (279)
Q Consensus 168 ~~~~v-~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~-------------------- 223 (279)
-..++ ..-++...+..++-.+.+|.|+-.|+............. ......+.+.+-
T Consensus 181 ~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~ 260 (342)
T PF06433_consen 181 DDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGG 260 (342)
T ss_dssp TTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--
T ss_pred CCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCC
Confidence 22233 244455555555557788888888887765432222110 000001111110
Q ss_pred -CCc-----------------------cccEEEEEEecCCC-EEEEe-cCCCeEEEEECCCCeEEEEEeCCC
Q 023642 224 -GGY-----------------------SFGIFSLKFSTDGR-ELVAG-SSDDCIYVYDLEANKLSLRILAHT 269 (279)
Q Consensus 224 -~~~-----------------------~~~v~~~~~sp~g~-~l~t~-s~d~~i~vwd~~~~~~~~~~~~h~ 269 (279)
..| ...+.++..+.+.+ +|++. ..++.+.+||..+|+.+.++++-.
T Consensus 261 ~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 261 EGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred CCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence 001 23456788887755 56544 457899999999999999998543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=92.60 E-value=7.2 Score=34.72 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=40.7
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEee--ee-e-ccCCCcceEEEEECCCC
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK--DI-L-AKSLRWTVTDTSLSPDQ 181 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~--~~-~-~~~~~~~v~~~~~sp~~ 181 (279)
+...-..-..++|.||+++|++--..|+|++++..++..... +. . ...-.+....|+|+|+-
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 334446678899999998887776569999998665432111 10 0 11124568999999984
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=92.51 E-value=1.6 Score=41.18 Aligned_cols=78 Identities=14% Similarity=0.193 Sum_probs=54.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC----------CeE--Eeee------eeccCCCcceEEEEECCC---CC
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVER----------GWK--IQKD------ILAKSLRWTVTDTSLSPD---QR 182 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~----------~~~--~~~~------~~~~~~~~~v~~~~~sp~---~~ 182 (279)
.-.|..+.++|+|++|+..|..+ |.|-.+.. |.. ..+. +...+....|..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 45788899999999999888865 44443321 111 1111 111244557999999996 58
Q ss_pred EEEEEeCCCeEEEEECCCCc
Q 023642 183 HLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 183 ~l~~~~~d~~i~i~d~~~~~ 202 (279)
+|+.-..|+++|+||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 89999999999999997644
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.42 E-value=4.5 Score=34.93 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=35.6
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEE-EcCCC-----e--EEeeeeecc--CCCcceEEEEECCCCCEEEEEe
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIY-DVERG-----W--KIQKDILAK--SLRWTVTDTSLSPDQRHLVYAS 188 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iw-d~~~~-----~--~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~ 188 (279)
+.........+++.+++ +++ +... .|..| |.+.. + .+....... .+......++|.|||.+.++-+
T Consensus 67 fa~~l~~p~Gi~~~~~G-lyV-~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 67 FAEELSMVTGLAVAVGG-VYV-ATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eecCCCCccceeEecCC-EEE-eCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 33344566889999998 444 4443 34433 54321 1 111111111 0223478899999998766544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.32 Score=38.29 Aligned_cols=98 Identities=13% Similarity=0.027 Sum_probs=56.3
Q ss_pred eccccceEeeeeecCC-CCceeeCCCCCe-EEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC-cceEEEE
Q 023642 100 SAADCCHMLSRYLPVN-GPWPVDQTTSRA-YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTVTDTS 176 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~-~~~~l~~h~~~V-~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~ 176 (279)
...++.+.+|++..-. .......-...| ..+.--.++.+.++++.|+.|+.|++..++.+.. ...|+ .++..+.
T Consensus 76 G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~---~g~h~~~~~e~~i 152 (238)
T KOG2444|consen 76 GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGY---VGQHNFESGEELI 152 (238)
T ss_pred ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeee---eccccCCCcceeE
Confidence 4556666666544111 111122222233 3333444667889999999999999988755443 23444 4455555
Q ss_pred ECCCCCEEEEE--eCCCeEEEEECCC
Q 023642 177 LSPDQRHLVYA--SMSPIVHIVDVGS 200 (279)
Q Consensus 177 ~sp~~~~l~~~--~~d~~i~i~d~~~ 200 (279)
.+-.++.++.. |.|..++.|++..
T Consensus 153 vv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 153 VVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EecCCceEEeeccccchhhhhcchhh
Confidence 55556666665 6666677777654
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.26 E-value=5.7 Score=32.76 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=59.7
Q ss_pred CeEEEEECCCC-CEEEEEeCCCc-EEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-----CeEEEEEC
Q 023642 126 RAYVSQFSADG-SLFVAGFQASQ-IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDV 198 (279)
Q Consensus 126 ~V~~~~~spd~-~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~i~d~ 198 (279)
.--.++|+|.. .-++.+-.-|+ ..++|....+.+.......+ ....-.=.|||||.+|+..-.| |.|-|||.
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~-RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG-RHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC-ceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence 33456777743 34455544443 56788877654433221111 1011123599999998765433 67999999
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
+.+-... - .|+.++ -....+.|.+||+.++.+.
T Consensus 148 r~~fqrv-g---------E~~t~G-----iGpHev~lm~DGrtlvvan 180 (366)
T COG3490 148 REGFQRV-G---------EFSTHG-----IGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred cccccee-c---------ccccCC-----cCcceeEEecCCcEEEEeC
Confidence 8554321 1 122222 2456788999999988654
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.83 Score=41.77 Aligned_cols=89 Identities=22% Similarity=0.161 Sum_probs=47.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCC----Cceeeeeccccc-----ccee-EEeeCCCCCccccEEEEEEec----CCCEEEE
Q 023642 179 PDQRHLVYASMSPIVHIVDVGS----GTMESLANVTEI-----HDGL-DFSAADDGGYSFGIFSLKFST----DGRELVA 244 (279)
Q Consensus 179 p~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~v~~~~~sp----~g~~l~t 244 (279)
++...++.+..||.+....... +........... ..++ .+...+...-...+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667888888888887777654 111111110000 0000 000000011223456666666 6789999
Q ss_pred ecCCCeEEEEECCCCeEEEEEeC
Q 023642 245 GSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 245 ~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
.+.|+++++||+.+++++.++.-
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEET
T ss_pred EeCCCeEEEEECCCCeEEEEecc
Confidence 99999999999999999877654
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.2 Score=40.81 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=45.5
Q ss_pred CCCCEEEEEeCCCcEEEEEcCC----CeEEeeeeeccC--------------------CCcceEEEEECC----CCCEEE
Q 023642 134 ADGSLFVAGFQASQIRIYDVER----GWKIQKDILAKS--------------------LRWTVTDTSLSP----DQRHLV 185 (279)
Q Consensus 134 pd~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~--------------------~~~~v~~~~~sp----~~~~l~ 185 (279)
++...|+.+..||.+....... +...... .... ....+..+++++ +..+|+
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEE-LFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEE-EeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEE
Confidence 5777888889999988887764 2111111 0111 123456677777 778999
Q ss_pred EEeCCCeEEEEECCCCceeeee
Q 023642 186 YASMSPIVHIVDVGSGTMESLA 207 (279)
Q Consensus 186 ~~~~d~~i~i~d~~~~~~~~~~ 207 (279)
+.+.|+++|+||+.++.+....
T Consensus 235 tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEETTSEEEEEETTTTCEEEEE
T ss_pred EEeCCCeEEEEECCCCeEEEEe
Confidence 9999999999999999984443
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=91.74 E-value=8.7 Score=33.77 Aligned_cols=133 Identities=13% Similarity=0.120 Sum_probs=61.6
Q ss_pred CCeEEEEECCCCCEEEEEeC--------------------CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC--CCCC
Q 023642 125 SRAYVSQFSADGSLFVAGFQ--------------------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS--PDQR 182 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~--------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~ 182 (279)
.--+..-|.|..+.++|+.. ..++.+||+.+.+.++.+- +.........+.|. |+..
T Consensus 181 ~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id-Lg~~g~~pLEvRflH~P~~~ 259 (461)
T PF05694_consen 181 PFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID-LGEEGQMPLEVRFLHDPDAN 259 (461)
T ss_dssp -----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE-S-TTEEEEEEEEE-SSTT--
T ss_pred CCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe-cCCCCCceEEEEecCCCCcc
Confidence 34567788888888888752 3489999999987766543 32222235566664 4555
Q ss_pred E-EEEEeCCCeEEEEEC-CCCceee--eecccccc-ceeEEeeC--CCCCccccEEEEEEecCCCEEEEec-CCCeEEEE
Q 023642 183 H-LVYASMSPIVHIVDV-GSGTMES--LANVTEIH-DGLDFSAA--DDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVY 254 (279)
Q Consensus 183 ~-l~~~~~d~~i~i~d~-~~~~~~~--~~~~~~~~-~~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~t~s-~d~~i~vw 254 (279)
+ ++.+.....|..|-- ..++... +..+.... .+..+..- ....-..-|+.+..|.|.++|..+. .+|.|+.|
T Consensus 260 ~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqY 339 (461)
T PF05694_consen 260 YGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQY 339 (461)
T ss_dssp EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEE
T ss_pred ceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEE
Confidence 5 444445555555543 4444321 11111000 00000000 0000023589999999999998766 58999999
Q ss_pred ECCC
Q 023642 255 DLEA 258 (279)
Q Consensus 255 d~~~ 258 (279)
|+..
T Consensus 340 DISD 343 (461)
T PF05694_consen 340 DISD 343 (461)
T ss_dssp E-SS
T ss_pred ecCC
Confidence 9975
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=91.22 E-value=4 Score=35.19 Aligned_cols=76 Identities=21% Similarity=0.200 Sum_probs=43.6
Q ss_pred EECCCCCEEEEEe-CCC--cEEEEEcCCCeEEeeeeeccCCC-cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeee
Q 023642 131 QFSADGSLFVAGF-QAS--QIRIYDVERGWKIQKDILAKSLR-WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (279)
Q Consensus 131 ~~spd~~~l~s~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~ 206 (279)
+|.+||+.|+.++ .|+ .+.+.|+.+++..+. .... .......++|+.+.++.......++-.|+.+.+...+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QL----Tdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQL----TDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEEC----ccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE
Confidence 6788997765554 454 567778888865443 2221 2233567789999988777777899999999887655
Q ss_pred eccc
Q 023642 207 ANVT 210 (279)
Q Consensus 207 ~~~~ 210 (279)
....
T Consensus 118 y~~p 121 (386)
T PF14583_consen 118 YEVP 121 (386)
T ss_dssp EE--
T ss_pred EECC
Confidence 5443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.90 E-value=4.4 Score=33.46 Aligned_cols=79 Identities=14% Similarity=0.271 Sum_probs=56.7
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
+....+.++.|+|+.+.|++......-.++=...|+..........+ ..-.+.+..+|+++++--
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~---------------DpE~Ieyig~n~fvi~dE 147 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS---------------DPETIEYIGGNQFVIVDE 147 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC---------------ChhHeEEecCCEEEEEeh
Confidence 44456999999999999998888877777777778875544433221 345567777777777777
Q ss_pred CCCeEEEEECCCCe
Q 023642 247 SDDCIYVYDLEANK 260 (279)
Q Consensus 247 ~d~~i~vwd~~~~~ 260 (279)
.++.++++.+..+.
T Consensus 148 R~~~l~~~~vd~~t 161 (316)
T COG3204 148 RDRALYLFTVDADT 161 (316)
T ss_pred hcceEEEEEEcCCc
Confidence 78888888776553
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=90.55 E-value=8.4 Score=31.49 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=45.3
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 134 pd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
..++.|+.|.++| |.+++........+. .....|..+...|+-+.++.-+ |+.++++++..-..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i----~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~ 68 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI----LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEP 68 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE----eecceEEEEEEecccCEEEEEc-CCccEEEEchhhcc
Confidence 3678899999998 999998433222221 1222499999999888777665 49999999876554
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=90.21 E-value=9.2 Score=34.92 Aligned_cols=115 Identities=15% Similarity=0.205 Sum_probs=66.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC-cce-------EEEEECCCCCEEEEEeCCCeEEEEECCCCceeeee
Q 023642 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTV-------TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (279)
Q Consensus 136 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~v-------~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 207 (279)
+..++.++.++.|.-.|..+|+.+.+........ ..+ ..+++ .+..++.++.|+.+.-+|.++|+.....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777778899999999997766532211100 000 11122 2346777888999999999999985433
Q ss_pred ccccccceeEEeeCCCCCccccEEE-EEEecCCCEEEEec------CCCeEEEEECCCCeEEEEEe
Q 023642 208 NVTEIHDGLDFSAADDGGYSFGIFS-LKFSTDGRELVAGS------SDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~g~~l~t~s------~d~~i~vwd~~~~~~~~~~~ 266 (279)
........ ..+.+ .... ++. ++.+. .++.|+-+|.++|+.+=++.
T Consensus 147 ~~~~~~~~------------~~~tssP~v~-~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 147 KNGDYKAG------------YTITAAPLVV-KGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred cccccccc------------ccccCCcEEE-CCE-EEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 22110000 01111 1111 344 44432 26789999999999876654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=89.98 E-value=2.2 Score=32.47 Aligned_cols=30 Identities=13% Similarity=0.106 Sum_probs=25.4
Q ss_pred ceEEEEECCCC------CEEEEEeCCCeEEEEECCC
Q 023642 171 TVTDTSLSPDQ------RHLVYASMSPIVHIVDVGS 200 (279)
Q Consensus 171 ~v~~~~~sp~~------~~l~~~~~d~~i~i~d~~~ 200 (279)
.|.+++|||.| .+|++...++.+.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68999999965 3688899999999998764
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=89.89 E-value=15 Score=33.24 Aligned_cols=116 Identities=20% Similarity=0.252 Sum_probs=64.7
Q ss_pred CCCcEEEEEcCCCeEEeeeeeccCC----------------C-cce-EEEEECCCCCEEEEEeCCC--------------
Q 023642 144 QASQIRIYDVERGWKIQKDILAKSL----------------R-WTV-TDTSLSPDQRHLVYASMSP-------------- 191 (279)
Q Consensus 144 ~d~~i~iwd~~~~~~~~~~~~~~~~----------------~-~~v-~~~~~sp~~~~l~~~~~d~-------------- 191 (279)
.++.|..+|..+|+.+.+....... . ..+ ...++.+.+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 3678999999999776654321110 0 001 1234555566777776554
Q ss_pred ----eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccE-EEEEEecCCC---EEEEecCCCeEEEEECCCCeEEE
Q 023642 192 ----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI-FSLKFSTDGR---ELVAGSSDDCIYVYDLEANKLSL 263 (279)
Q Consensus 192 ----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~sp~g~---~l~t~s~d~~i~vwd~~~~~~~~ 263 (279)
.+.-+|..+|+......... +....+.. ....+ ..+. .-+|. .++.++.++.++..|.++|+.+-
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~-~~~~~~~~-----~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W 325 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTP-HDLWDYDG-----PNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS 325 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCC-CCCccccc-----CCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence 68889999999864432211 00000000 00011 1111 12343 57778889999999999999876
Q ss_pred EEe
Q 023642 264 RIL 266 (279)
Q Consensus 264 ~~~ 266 (279)
...
T Consensus 326 ~~~ 328 (488)
T cd00216 326 ARP 328 (488)
T ss_pred EeE
Confidence 543
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=89.77 E-value=11 Score=36.24 Aligned_cols=116 Identities=15% Similarity=0.107 Sum_probs=69.9
Q ss_pred CCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEE--eeeeeccCCCcc----------eEEEEECCCCCEEEEEeCC
Q 023642 124 TSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWT----------VTDTSLSPDQRHLVYASMS 190 (279)
Q Consensus 124 ~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~----------v~~~~~sp~~~~l~~~~~d 190 (279)
..+...++|+| +...||.-...|...||++...... ........+.+. -..+.|.++-..|+.++..
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~ 224 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS 224 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC
Confidence 35678899999 6678999999999999999221110 011111122222 3367888888888887764
Q ss_pred CeEEEEECCCCceeee-eccccccceeEEeeCCCCCccccEEEEEEecC--CC-EEEEecCCCeEEEEECCC
Q 023642 191 PIVHIVDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GR-ELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 191 ~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~-~l~t~s~d~~i~vwd~~~ 258 (279)
.+.++|+.+...... .... ...+|..+.-+|. +. +++|. ..|...++..
T Consensus 225 -~l~~~d~~~~~~~~~l~~~~---------------~~~~IlDv~~~~~~~~~~FiLTs---~eiiw~~~~~ 277 (765)
T PF10214_consen 225 -KLMLIDFESNWQTEYLVTAK---------------TWSWILDVKRSPDNPSHVFILTS---KEIIWLDVKS 277 (765)
T ss_pred -ceEEEECCCCCccchhccCC---------------ChhheeeEEecCCccceEEEEec---CeEEEEEccC
Confidence 578889987765331 1110 1236777777766 22 22232 4566666655
|
These proteins are found in fungi. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=89.52 E-value=10 Score=30.97 Aligned_cols=123 Identities=19% Similarity=0.197 Sum_probs=68.0
Q ss_pred CCEEEEEeCCCcEEEEEcCCC-----eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccc
Q 023642 136 GSLFVAGFQASQIRIYDVERG-----WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVT 210 (279)
Q Consensus 136 ~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 210 (279)
...|+.+.. .+|.+|..... ..... + .....+..++|. ++.|+.+..+ ...+.|+.++....+....
T Consensus 105 ~~~L~va~k-k~i~i~~~~~~~~~f~~~~ke-~---~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~ 176 (275)
T PF00780_consen 105 SRRLCVAVK-KKILIYEWNDPRNSFSKLLKE-I---SLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPS 176 (275)
T ss_pred ceEEEEEEC-CEEEEEEEECCcccccceeEE-E---EcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCcc
Confidence 344554444 58988887653 12222 2 223578899998 5577777654 4777888876654443221
Q ss_pred ccc-----------ceeEEeeC--------CC-------CCcc---------ccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 211 EIH-----------DGLDFSAA--------DD-------GGYS---------FGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 211 ~~~-----------~~~~~~~~--------~~-------~~~~---------~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
... ....+.-. .+ .|.. ..+.++++ ..++|+..+. +.|-||+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~-~~iEV~~ 253 (275)
T PF00780_consen 177 DSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNKNGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSS-NSIEVRS 253 (275)
T ss_pred CCcchhhhcccCCCceEEEEeCCceEEEEecceEEEEcCCCCcCcccEEEcCCchhEEEE--ECCEEEEECC-CEEEEEE
Confidence 110 00000000 00 1111 12233333 3557766554 5699999
Q ss_pred CCCCeEEEEEeCCC
Q 023642 256 LEANKLSLRILAHT 269 (279)
Q Consensus 256 ~~~~~~~~~~~~h~ 269 (279)
+.+++.++++....
T Consensus 254 ~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 254 LETGELVQTIPLPN 267 (275)
T ss_pred CcCCcEEEEEECCC
Confidence 99999999998643
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=89.48 E-value=7.8 Score=36.37 Aligned_cols=118 Identities=12% Similarity=0.078 Sum_probs=72.3
Q ss_pred CCeEEEEECC--CCCEEEEEeCCCcEEEEEcCC-------C----eE------EeeeeeccCCCcceEEEEEC--CCCCE
Q 023642 125 SRAYVSQFSA--DGSLFVAGFQASQIRIYDVER-------G----WK------IQKDILAKSLRWTVTDTSLS--PDQRH 183 (279)
Q Consensus 125 ~~V~~~~~sp--d~~~l~s~~~d~~i~iwd~~~-------~----~~------~~~~~~~~~~~~~v~~~~~s--p~~~~ 183 (279)
..|+-+.+.- +...|+.+..||.|.+|.+++ . .. +..... ......+++++++ ...++
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~-~~v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFH-LRVGASAWGLDIHDYKKSRL 179 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeE-eecCCceeEEEEEecCcceE
Confidence 3355554443 456788999999999996631 0 00 001111 1234479999999 88889
Q ss_pred EEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCC---C---EEEEecCCCeEEEEEC
Q 023642 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG---R---ELVAGSSDDCIYVYDL 256 (279)
Q Consensus 184 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g---~---~l~t~s~d~~i~vwd~ 256 (279)
||+++....|.||-............ . + .+..-|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~-s-~-----------~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVP-S-H-----------QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEecccccccccc-c-c-----------ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99988888877765543211111000 0 0 023368889987643 2 6777888998888887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=89.37 E-value=14 Score=32.45 Aligned_cols=120 Identities=13% Similarity=0.036 Sum_probs=57.0
Q ss_pred CCCEEEEEe-CCCcEEEEEcCCC---eEEeeeeec---cC--CCcceEEEEECCCCCEEEEEeCC------CeEEEEECC
Q 023642 135 DGSLFVAGF-QASQIRIYDVERG---WKIQKDILA---KS--LRWTVTDTSLSPDQRHLVYASMS------PIVHIVDVG 199 (279)
Q Consensus 135 d~~~l~s~~-~d~~i~iwd~~~~---~~~~~~~~~---~~--~~~~v~~~~~sp~~~~l~~~~~d------~~i~i~d~~ 199 (279)
+.++|+..+ ..++|.|.|+.+. -.+.+++.. .. --.....+-.-|+|+.++++-.| |-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 566777776 6789999998742 123333321 00 00123334455899888876432 357777877
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec--------------------CCCeEEEEECCCC
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--------------------SDDCIYVYDLEAN 259 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s--------------------~d~~i~vwd~~~~ 259 (279)
+.+.......... ...--+.+-|.|..+.++|+. ...++++||+.+.
T Consensus 166 tf~v~g~We~~~~-------------~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r 232 (461)
T PF05694_consen 166 TFEVKGRWEKDRG-------------PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR 232 (461)
T ss_dssp T--EEEE--SB-T-------------T------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred cccccceeccCCC-------------CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence 6665432222111 111345566677777776643 2457999999999
Q ss_pred eEEEEEeC
Q 023642 260 KLSLRILA 267 (279)
Q Consensus 260 ~~~~~~~~ 267 (279)
+.++++.-
T Consensus 233 ~~~Q~idL 240 (461)
T PF05694_consen 233 KLLQTIDL 240 (461)
T ss_dssp EEEEEEES
T ss_pred cEeeEEec
Confidence 99999873
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=89.04 E-value=3.5 Score=35.55 Aligned_cols=106 Identities=18% Similarity=0.206 Sum_probs=50.8
Q ss_pred EEcCCCeEEeeeeecc--CCCcceEEEEECCCCCEEEEEe-CC--CeEEEEECCCCceeeeeccccccceeEEeeCCCCC
Q 023642 151 YDVERGWKIQKDILAK--SLRWTVTDTSLSPDQRHLVYAS-MS--PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG 225 (279)
Q Consensus 151 wd~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~-~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (279)
-|..+|..+.+..... .|.-..+.=+|.+||+.|+.++ .| ..+.+.|+.+++...+......
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~------------- 81 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD------------- 81 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-------------
T ss_pred eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC-------------
Confidence 3666775554433222 2223445557889997765554 34 4678889999987665542110
Q ss_pred ccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcce
Q 023642 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272 (279)
Q Consensus 226 ~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v 272 (279)
......++|+.+.++-......|+-.|+.+.+....+......+
T Consensus 82 ---~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~ 125 (386)
T PF14583_consen 82 ---NTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWK 125 (386)
T ss_dssp ----TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEE
T ss_pred ---CccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccc
Confidence 11234567888887665556789999999987655555444433
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=88.32 E-value=2.8 Score=22.95 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=26.6
Q ss_pred cCCCEEEEec-CCCeEEEEECCCCeEEEEEeCCCcc
Q 023642 237 TDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTVN 271 (279)
Q Consensus 237 p~g~~l~t~s-~d~~i~vwd~~~~~~~~~~~~h~~~ 271 (279)
|++++|+++. .+++|.++|..+++.+.++.....+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P 36 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP 36 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC
Confidence 5777766655 5789999999999999888764333
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=88.05 E-value=18 Score=31.89 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=25.6
Q ss_pred cEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 229 ~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
.|..++..+..+.+++.+.++.|.+|++..+
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 4999999998899999999999999999753
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.86 E-value=3.2 Score=38.13 Aligned_cols=75 Identities=5% Similarity=0.061 Sum_probs=45.8
Q ss_pred CCCEEEEEeCC------CeEEEEECCC-CceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC--e
Q 023642 180 DQRHLVYASMS------PIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD--C 250 (279)
Q Consensus 180 ~~~~l~~~~~d------~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~--~ 250 (279)
+++..+.|+.+ ..+..||..+ .+........... .....+. -+|+..++|+.++ +
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r--------------~~~~~~~--~~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL--------------SALHTIL--HDNTIMMLHCYESYML 526 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc--------------ccceeEE--ECCEEEEEeeecceee
Confidence 56666666654 2467788887 5654333221110 1112222 2688888999888 8
Q ss_pred EEEEECCCCeEEEEEeCCCc
Q 023642 251 IYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 251 i~vwd~~~~~~~~~~~~h~~ 270 (279)
+-.||..+.+....-+.|..
T Consensus 527 ~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 527 QDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred hhhcCcccccccchhhhcCC
Confidence 89999998887666666654
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=87.68 E-value=4.1 Score=27.25 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=25.7
Q ss_pred CCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEE
Q 023642 144 QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (279)
Q Consensus 144 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 187 (279)
.+|++..||..+++.... ..+ -.....++++||+.+++.+
T Consensus 35 ~~GRll~ydp~t~~~~vl---~~~-L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVL---LDG-LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp --EEEEEEETTTTEEEEE---EEE-ESSEEEEEE-TTSSEEEEE
T ss_pred CCcCEEEEECCCCeEEEe---hhC-CCccCeEEEcCCCCEEEEE
Confidence 467899999999854221 112 1257899999999986654
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=87.48 E-value=17 Score=30.89 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=65.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCc------EEEEEcCC--C----eEEeeeeeccCCCc--------ceEEEEECCCCCE
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQ------IRIYDVER--G----WKIQKDILAKSLRW--------TVTDTSLSPDQRH 183 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~------i~iwd~~~--~----~~~~~~~~~~~~~~--------~v~~~~~sp~~~~ 183 (279)
-+.++.+.+.|++..+++-+.++. +..+++.. + -.......+..-.+ ...++++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 466788888876666666666666 55555443 1 01111111222111 3457888778888
Q ss_pred EEEEeCC------CeEEEEECCCCceeeeeccccccceeEEeeC--CCCCccccEEEEEEecCCCEEEEec
Q 023642 184 LVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSAA--DDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 184 l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
+++.=.+ ..|+.++.. |.......... .+..... .....+...-+++++|+|+.|+++.
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~---~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPA---AFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEcccc---ccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 8777677 788888876 55422211111 1100000 1111344688999999999666543
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=87.27 E-value=29 Score=33.36 Aligned_cols=128 Identities=14% Similarity=0.107 Sum_probs=70.0
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCc-----ceEEEEEC----------------CCCCEEEEEeCCCeE
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-----TVTDTSLS----------------PDQRHLVYASMSPIV 193 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~s----------------p~~~~l~~~~~d~~i 193 (279)
.+..++.++.++.|.-.|..+|+.+.+......... ..+.+++. ..+..++.++.|+.+
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 355677778888999999999987766432111110 01223332 134478888899999
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec--CCCEEEEecC----------CCeEEEEECCCCeE
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSS----------DDCIYVYDLEANKL 261 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~t~s~----------d~~i~vwd~~~~~~ 261 (279)
.-.|.++|+.......... +.+...-.. ....-..+.-.| .+..++.|+. ++.|+-+|+++|+.
T Consensus 273 iALDA~TGk~~W~fg~~G~---vdl~~~~g~-~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGT---VDLTAGMGT-TPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EEEECCCCCEEEEecCCCc---eeeecccCc-CCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 9999999987532211000 001000000 000000111112 1334555532 57899999999998
Q ss_pred EEEEe
Q 023642 262 SLRIL 266 (279)
Q Consensus 262 ~~~~~ 266 (279)
+=++.
T Consensus 349 ~W~~~ 353 (764)
T TIGR03074 349 VWAWD 353 (764)
T ss_pred eeEEe
Confidence 87765
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=87.08 E-value=18 Score=30.75 Aligned_cols=62 Identities=23% Similarity=0.308 Sum_probs=42.4
Q ss_pred CeEEEEECCCCCEEEEEeCC------CcEEEEEcCCCeEEeeee------------eccCCCcceEEEEECCCCCEEEEE
Q 023642 126 RAYVSQFSADGSLFVAGFQA------SQIRIYDVERGWKIQKDI------------LAKSLRWTVTDTSLSPDQRHLVYA 187 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d------~~i~iwd~~~~~~~~~~~------------~~~~~~~~v~~~~~sp~~~~l~~~ 187 (279)
..-++++.+++.++++.=.+ ..|..++.. |.....+. .....+....+++++|||+.|+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 44578887888888887666 788888876 54433221 112234579999999999976665
Q ss_pred e
Q 023642 188 S 188 (279)
Q Consensus 188 ~ 188 (279)
.
T Consensus 165 ~ 165 (326)
T PF13449_consen 165 M 165 (326)
T ss_pred E
Confidence 5
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=86.83 E-value=7.3 Score=26.05 Aligned_cols=41 Identities=10% Similarity=-0.015 Sum_probs=27.2
Q ss_pred eCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe
Q 023642 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 188 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~ 245 (279)
..+|.+..||..+++...+..-. .-.+.|++++|+.+++.+
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L-----------------~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGL-----------------YFPNGVALSPDESFVLVA 74 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEE-----------------SSEEEEEE-TTSSEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCC-----------------CccCeEEEcCCCCEEEEE
Confidence 34678999999998865443321 156889999999987764
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.49 E-value=8 Score=34.68 Aligned_cols=81 Identities=17% Similarity=0.146 Sum_probs=54.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEE-----c----CCCeEEee--e------eeccCCCcceEEEEECCCC---CE
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYD-----V----ERGWKIQK--D------ILAKSLRWTVTDTSLSPDQ---RH 183 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd-----~----~~~~~~~~--~------~~~~~~~~~v~~~~~sp~~---~~ 183 (279)
.-.|..+..+|.|..++-++.+|-+.++= . +.|+.... . +......-.+..++|+|+. ..
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 45577888999999999999988655432 1 22321111 0 0011222357789999976 67
Q ss_pred EEEEeCCCeEEEEECCCCcee
Q 023642 184 LVYASMSPIVHIVDVGSGTME 204 (279)
Q Consensus 184 l~~~~~d~~i~i~d~~~~~~~ 204 (279)
|..-+.|..+++||+......
T Consensus 183 L~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEEecCcEEEEEecCCcchh
Confidence 888889999999999876654
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=86.49 E-value=32 Score=33.12 Aligned_cols=134 Identities=13% Similarity=0.105 Sum_probs=75.7
Q ss_pred CCCCCeEEEEEC---C----CCCEEEEEeCCCcEEEEEc------CCC---------eEEeeeeeccCCCcceEEEEECC
Q 023642 122 QTTSRAYVSQFS---A----DGSLFVAGFQASQIRIYDV------ERG---------WKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 122 ~h~~~V~~~~~s---p----d~~~l~s~~~d~~i~iwd~------~~~---------~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.-..+|..+.|. . ..++|++-.. ..+.|+.. ... .++..+........+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~-~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTE-TSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcC-CEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456888889888 2 2235554443 56666661 110 11111111111223678999999
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCcee--eeeccccccceeE-EeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 180 -DQRHLVYASMSPIVHIVDVGSGTME--SLANVTEIHDGLD-FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 180 -~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
+.+.||.....|...|||+...... ..........+-. +.+. .......+.|.++...|+.++. ..+.++|
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~----e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d 230 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPE----ELSNWKRILWVSDSNRLLVCNR-SKLMLID 230 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCc----ccCcceeeEecCCCCEEEEEcC-CceEEEE
Confidence 5578999999999999999322211 1111111111111 1111 1134568899988888887765 4588999
Q ss_pred CCCCeE
Q 023642 256 LEANKL 261 (279)
Q Consensus 256 ~~~~~~ 261 (279)
+.+...
T Consensus 231 ~~~~~~ 236 (765)
T PF10214_consen 231 FESNWQ 236 (765)
T ss_pred CCCCCc
Confidence 987654
|
These proteins are found in fungi. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=86.27 E-value=11 Score=27.39 Aligned_cols=118 Identities=13% Similarity=0.175 Sum_probs=68.0
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCeEEe----eeeeccCCCcceEEEEECC---C--CCEEEEEeCCCeEEEEECC
Q 023642 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQ----KDILAKSLRWTVTDTSLSP---D--QRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 129 ~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~v~~~~~sp---~--~~~l~~~~~d~~i~i~d~~ 199 (279)
.-.|......|+.++.-++|.|++........ ..+.+-.....|++++--| + ...|+.|+. ..+..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence 34566666788888888999999875431110 0111223444677775433 2 345666655 479999998
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEe---c-CCCEEEEecCCCeEEEEECCCCeEEEEE
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS---T-DGRELVAGSSDDCIYVYDLEANKLSLRI 265 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---p-~g~~l~t~s~d~~i~vwd~~~~~~~~~~ 265 (279)
...-........ .|.++.+- . +.+.++. +.+..|.-||....+..-+.
T Consensus 82 ~N~d~Fyke~~D-----------------Gvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 82 NNSDLFYKEVPD-----------------GVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cCchhhhhhCcc-----------------ceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEEEEEe
Confidence 766543333222 45555552 2 2344444 44677888887755554443
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.18 E-value=7.1 Score=38.73 Aligned_cols=151 Identities=13% Similarity=0.048 Sum_probs=86.8
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEE-CCC-------CCE-EEEEeCCCcEEEEEcCCCeEEeee------ee
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQF-SAD-------GSL-FVAGFQASQIRIYDVERGWKIQKD------IL 164 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~-spd-------~~~-l~s~~~d~~i~iwd~~~~~~~~~~------~~ 164 (279)
...|..+++|++........+.+-...|..+.. -|. =++ |+.+.. -.|.++-+.-.+..... ..
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCccccccccee
Confidence 678999999999997777778888888877753 232 223 333332 45666654322111010 11
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECC----CCc----eeeeeccccc----cce-eEEeeCCCCCccccEE
Q 023642 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG----SGT----MESLANVTEI----HDG-LDFSAADDGGYSFGIF 231 (279)
Q Consensus 165 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~----~~~----~~~~~~~~~~----~~~-~~~~~~~~~~~~~~v~ 231 (279)
..--...|.++....+|+.+++|-.+ .+|.+. .+- +......... ... ..+. ..+..+|.
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~----~~~~dpI~ 246 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP----GSSKDPIR 246 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC----CCCCCcce
Confidence 11123468888888888887776555 444331 111 1000000000 000 0111 12445899
Q ss_pred EEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 232 SLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 232 ~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
.++....-..+.+-+..++|.+||+..
T Consensus 247 qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 247 QITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeEeccccceeeeeccCceEEEEEccC
Confidence 999887777888999999999999976
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=86.04 E-value=3.3 Score=22.45 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=19.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeC-C--CcEEEE
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQ-A--SQIRIY 151 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~-d--~~i~iw 151 (279)
....-....|||||+.|+-.+. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4456778899999998876544 4 444444
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.96 E-value=1.1 Score=42.49 Aligned_cols=69 Identities=22% Similarity=0.315 Sum_probs=46.7
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEE-----------ECCCCCEEEEEeCCCeEEE
Q 023642 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS-----------LSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 127 V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-----------~sp~~~~l~~~~~d~~i~i 195 (279)
|..+-|-++..++..+-.++.|++...++... ..+++|...+.+++ ++|||..++....||.++.
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF 261 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence 33344445778888888888888877765422 12344654444433 6899999999999998888
Q ss_pred EECC
Q 023642 196 VDVG 199 (279)
Q Consensus 196 ~d~~ 199 (279)
|.+-
T Consensus 262 ~Qiy 265 (1283)
T KOG1916|consen 262 YQIY 265 (1283)
T ss_pred eeee
Confidence 8653
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.88 E-value=15 Score=32.49 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=30.2
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 023642 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~ 201 (279)
.-+++|.++.|+||.+.||.--.+.+|-+++....
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d 98 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPD 98 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCC
Confidence 44568999999999999999999999999987543
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=85.67 E-value=4.2 Score=22.22 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=20.1
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCCceee
Q 023642 179 PDQRHLVYAS-MSPIVHIVDVGSGTMES 205 (279)
Q Consensus 179 p~~~~l~~~~-~d~~i~i~d~~~~~~~~ 205 (279)
|+++.|+++. .++.|.++|..+++...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~ 28 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIA 28 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEE
Confidence 6777766655 57899999998877644
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.93 E-value=6.8 Score=38.41 Aligned_cols=125 Identities=9% Similarity=0.022 Sum_probs=73.8
Q ss_pred CCeEEEEECCCCCEEEE--EeCCCcEEEEEcCCCeE--------EeeeeeccCCCcceEEEEECCCCC-EEEEEeCCCeE
Q 023642 125 SRAYVSQFSADGSLFVA--GFQASQIRIYDVERGWK--------IQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIV 193 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s--~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i 193 (279)
-++..+...+|+...+. .+++..|..||+..-.. +..............++.|.|.-. ..+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 45566677778665433 44555888999875311 111001111122355677888543 35666778888
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
++..+.-...... ... -....++++|+|.|+.++.|-..|++.-|--. ++....++
T Consensus 181 ~V~~~~~~~~~v~-s~p---------------~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip 236 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVT-SFP---------------VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIP 236 (1405)
T ss_pred hhhhhhhhhhhhc-ccC---------------cccceeeEEeccccceeeEecCCCeEEEeecc-cceeeccc
Confidence 8876543221110 000 12268999999999999999999998888653 44444444
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=84.70 E-value=20 Score=29.30 Aligned_cols=108 Identities=17% Similarity=0.045 Sum_probs=66.7
Q ss_pred EEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEee
Q 023642 141 AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (279)
Q Consensus 141 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 220 (279)
-.=.++...+||..+-+.+..+ ...+. =+.++ .|+..|+.+.....++.+|..+-+............
T Consensus 105 LTWk~~~~f~yd~~tl~~~~~~-~y~~E---GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~------ 172 (264)
T PF05096_consen 105 LTWKEGTGFVYDPNTLKKIGTF-PYPGE---GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGR------ 172 (264)
T ss_dssp EESSSSEEEEEETTTTEEEEEE-E-SSS-----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTE------
T ss_pred EEecCCeEEEEccccceEEEEE-ecCCc---ceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCE------
Confidence 3346788999999988776653 23332 24444 578888888888899999998876644333221111
Q ss_pred CCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 221 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 221 ~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
--..++-+.|- +|...|=.-....|...|..+|+.+..+.
T Consensus 173 -----pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iD 212 (264)
T PF05096_consen 173 -----PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWID 212 (264)
T ss_dssp -----E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE
T ss_pred -----ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEE
Confidence 11256677775 67666656667789999999998887764
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=83.73 E-value=18 Score=34.23 Aligned_cols=71 Identities=10% Similarity=0.072 Sum_probs=46.7
Q ss_pred ceEEEEECCCCCEEEEEeCC-----CeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe
Q 023642 171 TVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~ 245 (279)
.+..+.++||+++|+.+... ..+++.|+.++...... . . ..-..++|++|++.|+..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i-~----------------~~~~~~~w~~D~~~~~y~ 189 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-L-D----------------NVEPSFVWANDSWTFYYV 189 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-c-c----------------CcceEEEEeeCCCEEEEE
Confidence 57788999999998765432 25888999887631110 0 0 011458999998866554
Q ss_pred cC------CCeEEEEECCCC
Q 023642 246 SS------DDCIYVYDLEAN 259 (279)
Q Consensus 246 s~------d~~i~vwd~~~~ 259 (279)
.. ...|+.+++.++
T Consensus 190 ~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 190 RKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred EecCCCCCCCEEEEEECCCC
Confidence 32 246888999887
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=83.63 E-value=27 Score=29.80 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=60.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEE-EEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRI-YDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
...+..+.+.|++.+++++.. |.+.. +| ..++..... ...-...+.++.+.|+++.++.+ ..|.+++=....+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~-~gg~tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWE-PGQTAWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcC-CCCCeEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC
Confidence 567899999999877766554 54432 22 222222121 12334578999999999887765 45665432233333
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEE
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~ 252 (279)
.-........ .....+..+.|.|++..++.+ .++.|.
T Consensus 247 sW~~~~~~~~------------~~~~~l~~v~~~~~~~~~~~G-~~G~v~ 283 (334)
T PRK13684 247 SWSKPIIPEI------------TNGYGYLDLAYRTPGEIWAGG-GNGTLL 283 (334)
T ss_pred ccccccCCcc------------ccccceeeEEEcCCCCEEEEc-CCCeEE
Confidence 2110000000 011257888999888766554 456443
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.60 E-value=3 Score=40.66 Aligned_cols=104 Identities=8% Similarity=-0.007 Sum_probs=65.6
Q ss_pred CCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 125 SRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 125 ~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
.-+.++.|+|.- ...+....|+.|++..+..-...... .......++++|+|.|++++.|-..|++.-|...-...
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s---~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik 232 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS---FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK 232 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhcc---cCcccceeeEEeccccceeeEecCCCeEEEeeccccee
Confidence 344667898843 34566677888888876543222111 13344689999999999999999999998886543322
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEE
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t 244 (279)
..+...... -.+.|.+|+|-..-.++++
T Consensus 233 ~~ip~Pp~~-------------e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 233 SEIPEPPVE-------------ENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ecccCCCcC-------------CCcceeEEEEecceeEEEE
Confidence 111111000 1237899999876666664
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=83.53 E-value=26 Score=32.66 Aligned_cols=70 Identities=24% Similarity=0.223 Sum_probs=45.6
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEe--cCCCEEEEecCCC
Q 023642 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSSDD 249 (279)
Q Consensus 172 v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~g~~l~t~s~d~ 249 (279)
..-+.-+.-++..+.-+....+.|||.+.+....... |. ....|.++.|. |+|+.+++.+-..
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~---------f~------~~~~I~dLDWtst~d~qsiLaVGf~~ 96 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEES---------FS------EDDPIRDLDWTSTPDGQSILAVGFPH 96 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeee---------ec------CCCceeeceeeecCCCCEEEEEEcCc
Confidence 3344444445554444455689999999887543222 21 12378888884 6899888888888
Q ss_pred eEEEEEC
Q 023642 250 CIYVYDL 256 (279)
Q Consensus 250 ~i~vwd~ 256 (279)
.|.++--
T Consensus 97 ~v~l~~Q 103 (631)
T PF12234_consen 97 HVLLYTQ 103 (631)
T ss_pred EEEEEEc
Confidence 8888854
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.24 E-value=26 Score=32.27 Aligned_cols=68 Identities=16% Similarity=0.039 Sum_probs=37.1
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCC------------------
Q 023642 135 DGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP------------------ 191 (279)
Q Consensus 135 d~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~------------------ 191 (279)
++...+.||.++ .+..||..+...... ............+.+ +|+..+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~-~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKML-PDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEEC-CCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccccc
Confidence 567777887654 478899887633221 111111111122222 677777776542
Q ss_pred -----eEEEEECCCCceee
Q 023642 192 -----IVHIVDVGSGTMES 205 (279)
Q Consensus 192 -----~i~i~d~~~~~~~~ 205 (279)
.+..||..+.+...
T Consensus 428 ~~~~~~ve~YDP~td~W~~ 446 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWET 446 (557)
T ss_pred ccccceEEEECCCCCeEee
Confidence 46678877766543
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.15 E-value=19 Score=31.94 Aligned_cols=73 Identities=5% Similarity=0.067 Sum_probs=48.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEee-eeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK-DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
-.++|.++.||+|.+.+|.--.|+.|-+++....+.... ...+......|.+..|+.+ .-+|.-...| +-+|.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~ 138 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQ 138 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEE
Confidence 357999999999999999999999999999843322111 1112233345888888765 5555555444 34443
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=80.19 E-value=11 Score=35.35 Aligned_cols=77 Identities=9% Similarity=0.117 Sum_probs=54.4
Q ss_pred eeCCCCCeEEEEEC--CCCCEEEEEeCCCcEEEEEcCCC--eEEeeeeeccCCCcceEEEEECCCC---C---EEEEEeC
Q 023642 120 VDQTTSRAYVSQFS--ADGSLFVAGFQASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQ---R---HLVYASM 189 (279)
Q Consensus 120 l~~h~~~V~~~~~s--pd~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~---~---~l~~~~~ 189 (279)
.......+++++++ ...+++|++++...|.||-.... +..... ...+...|.+++|-++. . .+++++-
T Consensus 159 ~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~--s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI 236 (717)
T PF08728_consen 159 HLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP--SHQHSHNIPNVSFLDDDLDPNGHVKVVATDI 236 (717)
T ss_pred EeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc--ccccccCCCeeEeecCCCCCccceEEEEEec
Confidence 34456789999998 88889999988888888765432 111110 12344578999997753 2 7888999
Q ss_pred CCeEEEEEC
Q 023642 190 SPIVHIVDV 198 (279)
Q Consensus 190 d~~i~i~d~ 198 (279)
.|.+.+|++
T Consensus 237 ~G~v~~~~I 245 (717)
T PF08728_consen 237 SGEVWTFKI 245 (717)
T ss_pred cCcEEEEEE
Confidence 999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 279 | ||||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 3e-04 |
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 279 | |||
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.95 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.95 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.95 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.95 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.94 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.94 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.94 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.94 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.94 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.93 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.93 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.93 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.93 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.93 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.93 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.93 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.93 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.93 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.93 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.93 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.93 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.92 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.92 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.92 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.92 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.92 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.92 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.91 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.91 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.91 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.91 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.91 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.91 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.91 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.91 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.9 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.9 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.9 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.9 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.9 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.9 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.9 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.9 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.9 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.9 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.9 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.9 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.89 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.89 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.89 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.89 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.89 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.89 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.89 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.89 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.89 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.88 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.88 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.88 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.88 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.88 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.88 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.88 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.88 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.88 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.88 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.88 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.87 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.87 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.87 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.87 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.87 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.87 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.87 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.87 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.87 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.87 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.87 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.87 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.87 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.87 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.86 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.86 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.86 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.86 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.86 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.86 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.86 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.86 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.86 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.86 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.86 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.86 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.85 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.85 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.85 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.85 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.85 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.85 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.84 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.84 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.84 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.84 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.84 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.84 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.84 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.84 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.84 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.84 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.84 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.83 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.83 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.83 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.83 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.83 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.82 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.82 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.82 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.82 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.82 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.81 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.8 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.79 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.75 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.75 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.74 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.73 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.73 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.72 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.7 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.66 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.62 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.57 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.57 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.56 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.56 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.55 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.53 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.52 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.52 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.51 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.51 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.5 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.5 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.5 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.5 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.5 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.49 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.48 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.46 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.44 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.43 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.43 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.43 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.43 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.41 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.41 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.4 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.39 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.39 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.39 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.38 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.33 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.32 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.29 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.29 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.26 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.26 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.23 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.16 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.16 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.1 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.08 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.06 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.05 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.04 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.03 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.03 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.02 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.0 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.97 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.97 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.96 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.96 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.95 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.95 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.95 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.92 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.92 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.9 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.84 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.82 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.81 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.8 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.78 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.75 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.73 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.7 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.7 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.69 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.6 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.6 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.58 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.56 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.55 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.53 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.52 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.5 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.49 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.45 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.43 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.42 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.41 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.38 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.36 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.35 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.3 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.29 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.26 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.25 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.24 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.23 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.2 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.18 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.18 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.15 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.09 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.08 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.05 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.02 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.01 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.97 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.92 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.92 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.91 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.91 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.79 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.69 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.69 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.6 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.59 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.57 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.57 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.57 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.55 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.47 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.46 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.42 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.4 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.4 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.38 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.37 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.27 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.25 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.24 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.21 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.15 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.12 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.07 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.06 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.01 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.83 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.8 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.78 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.67 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.67 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.67 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.48 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.39 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 96.37 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.34 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.34 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.23 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.21 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 96.2 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.19 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.11 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.11 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.04 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 95.9 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 95.81 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 95.69 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 95.66 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.64 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.64 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 95.6 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 95.52 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 95.5 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 95.47 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 95.46 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 95.36 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 95.29 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.28 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 95.26 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 95.09 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 94.83 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 94.83 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 94.74 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 94.51 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.5 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 94.48 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 94.27 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 93.75 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 93.38 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 93.35 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 93.32 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 93.29 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 93.03 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 92.2 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 92.11 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 92.07 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 91.73 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 91.69 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 91.46 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 91.02 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 90.9 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 90.27 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 89.54 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 89.12 | |
| 3f7f_A | 729 | Nucleoporin NUP120; nuclear pore complex, macromol | 88.79 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 88.32 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 88.03 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 87.77 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 87.49 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 87.01 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 86.75 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 85.89 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 85.8 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 85.78 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 85.74 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 85.58 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 85.47 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 84.71 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 84.15 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 83.19 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 82.19 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 81.35 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 80.41 |
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=193.78 Aligned_cols=167 Identities=19% Similarity=0.248 Sum_probs=146.2
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL 168 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (279)
.+++++.+ .+.++.+.+|++........+..|...|.+++|+|++++|++|+.|+.|++||+.+++.+.. +.+|
T Consensus 129 ~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~---~~~h 205 (321)
T 3ow8_A 129 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT---LEGH 205 (321)
T ss_dssp EECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---ECCC
T ss_pred EECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE---Eccc
Confidence 45666664 45678888998877766677889999999999999999999999999999999999977654 4688
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC
Q 023642 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d 248 (279)
..+|.+++|+|++++|++++.|+.|++||++++...... . +|...|.+++|+|++++|++++.|
T Consensus 206 ~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~-----------~-----~h~~~v~~~~~sp~~~~l~s~s~D 269 (321)
T 3ow8_A 206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL-----------S-----GHASWVLNVAFCPDDTHFVSSSSD 269 (321)
T ss_dssp SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE-----------C-----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE-----------c-----CCCCceEEEEECCCCCEEEEEeCC
Confidence 889999999999999999999999999999987764322 1 266799999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 249 DCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 249 ~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
++|++||+.+++++.++.+|...|+++..
T Consensus 270 ~~v~iwd~~~~~~~~~~~~h~~~v~~v~~ 298 (321)
T 3ow8_A 270 KSVKVWDVGTRTCVHTFFDHQDQVWGVKY 298 (321)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred CcEEEEeCCCCEEEEEEcCCCCcEEEEEE
Confidence 99999999999999999999999998865
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-26 Score=193.32 Aligned_cols=169 Identities=12% Similarity=0.104 Sum_probs=139.3
Q ss_pred ccCCCCee--eccccceEeeeeecCCCCce----eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeec
Q 023642 92 NYSGRGRF--SAADCCHMLSRYLPVNGPWP----VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA 165 (279)
Q Consensus 92 ~~~~~~~~--~~~d~~~~~~~~~~~~~~~~----l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 165 (279)
.+++++.+ .+.|+.+.+|++...+.... +.+|.+.|++++|+|++++|++|+.|++|++||+.+++++.. +
T Consensus 89 ~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~---~ 165 (344)
T 4gqb_B 89 TWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSS---Y 165 (344)
T ss_dssp EEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---E
T ss_pred EEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE---E
Confidence 34556555 56788999999877665433 458999999999999999999999999999999999987664 5
Q ss_pred cCCCcceEEEEECCCCC-EEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-CCEEE
Q 023642 166 KSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELV 243 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~ 243 (279)
.+|...|.+++|+|++. +|++++.|++|++||+++++........ .+...+.+++|+|+ +++|+
T Consensus 166 ~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS--------------APGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------------------CCCEEEEEECSSCTTEEE
T ss_pred cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc--------------eeeccceeeeecCCCCcceE
Confidence 78999999999999885 7899999999999999988764332110 13347899999995 66889
Q ss_pred EecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 244 AGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 244 t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+|+.|++|++||+++++++.++.+|...|+++..
T Consensus 232 sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f 265 (344)
T 4gqb_B 232 FGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF 265 (344)
T ss_dssp EEETTSEEEEEESCC--CCEEEECCSSCEEEEEE
T ss_pred EeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 9999999999999999999999999999999875
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-26 Score=195.53 Aligned_cols=166 Identities=15% Similarity=0.162 Sum_probs=147.7
Q ss_pred cCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR 169 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 169 (279)
+++++.+ ++.|+.+.+|++........+.+|.+.|.+++|+|++++|++|+.|++|++||+.+++++.. +.+|.
T Consensus 116 ~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~---~~~h~ 192 (410)
T 1vyh_C 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT---MHGHD 192 (410)
T ss_dssp ECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC---CCCCS
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE---EcCCC
Confidence 5666554 56789999999988888888999999999999999999999999999999999998877654 56899
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC
Q 023642 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~ 249 (279)
..|.+++|+|++.+|++++.|++|++||++++..... +.+ |...|.++.|+|++.+|++++.|+
T Consensus 193 ~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~-----------~~~-----h~~~v~~~~~~~~g~~l~s~s~D~ 256 (410)
T 1vyh_C 193 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT-----------FTG-----HREWVRMVRPNQDGTLIASCSNDQ 256 (410)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE-----------EEC-----CSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE-----------EeC-----CCccEEEEEECCCCCEEEEEcCCC
Confidence 9999999999999999999999999999999876432 222 666999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 250 CIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+|++||++++++...+.+|...|+++..
T Consensus 257 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~ 284 (410)
T 1vyh_C 257 TVRVWVVATKECKAELREHRHVVECISW 284 (410)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred eEEEEECCCCceeeEecCCCceEEEEEE
Confidence 9999999999999999999999988764
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=189.93 Aligned_cols=161 Identities=19% Similarity=0.177 Sum_probs=140.3
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.|+.+.+|++........+.+|.+.|.+++|+|++++|++|+.|+.|++||+.++.+... +.+|...|.+++|+|
T Consensus 160 ~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~---~~~h~~~v~~v~~~p 236 (340)
T 1got_B 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT---FTGHESDINAICFFP 236 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE---ECCCSSCEEEEEECT
T ss_pred EECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE---EcCCcCCEEEEEEcC
Confidence 46688899998876666667889999999999999999999999999999999999876654 568888999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
++++|++++.|++|++||+++++........ .+...|.+++|+|+|++|++|+.|+.|++||+.++
T Consensus 237 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~--------------~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 237 NGNAFATGSDDATCRLFDLRADQELMTYSHD--------------NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCT--------------TCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEccC--------------CcccceEEEEECCCCCEEEEECCCCeEEEEEcccC
Confidence 9999999999999999999987754322110 13347999999999999999999999999999999
Q ss_pred eEEEEEeCCCcceeEEEe
Q 023642 260 KLSLRILAHTVNIALWIT 277 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v~~ 277 (279)
+.+..+.+|...|+++..
T Consensus 303 ~~~~~~~~h~~~v~~~~~ 320 (340)
T 1got_B 303 DRAGVLAGHDNRVSCLGV 320 (340)
T ss_dssp CEEEEEECCSSCEEEEEE
T ss_pred cEeeEeecCCCcEEEEEE
Confidence 999999999999998865
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=185.43 Aligned_cols=183 Identities=12% Similarity=0.148 Sum_probs=145.0
Q ss_pred cCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR 169 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 169 (279)
+++++.+ .+.|+.+.+|++........+.+|.+.|.+++|+|++++|++|+.|++|++||+.++..... .+.+|.
T Consensus 63 ~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~--~~~~h~ 140 (304)
T 2ynn_A 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ--TFEGHE 140 (304)
T ss_dssp EEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE--EECCCC
T ss_pred EeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh--hhcccC
Confidence 4444443 56788999999877776677899999999999999999999999999999999988754433 356889
Q ss_pred cceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeeeccc--cccce----------eEEeeCCC-------------
Q 023642 170 WTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVT--EIHDG----------LDFSAADD------------- 223 (279)
Q Consensus 170 ~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~----------~~~~~~~~------------- 223 (279)
..|.+++|+| ++.+|++++.|++|++||++.+......... ..... +...+..+
T Consensus 141 ~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~ 220 (304)
T 2ynn_A 141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220 (304)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE
T ss_pred CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc
Confidence 9999999999 6789999999999999999765532211100 00011 11111111
Q ss_pred ----CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 224 ----GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 224 ----~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
.+|...|.+++|+|++++|++++.|++|++||+.+++++.++..|...+.++..
T Consensus 221 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~ 278 (304)
T 2ynn_A 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIAT 278 (304)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEE
T ss_pred ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEE
Confidence 468889999999999999999999999999999999999999999999888763
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-25 Score=184.04 Aligned_cols=183 Identities=13% Similarity=0.176 Sum_probs=146.8
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL 168 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (279)
.++|++.+ .+.|+.+.+|++........+..|..+|.+++|+|++++|++|+.|++|++||+.+++++.. +.+|
T Consensus 20 ~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~---~~~h 96 (304)
T 2ynn_A 20 DFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD---FEAH 96 (304)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE---EECC
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEE---EeCC
Confidence 45666654 46788999999876665667889999999999999999999999999999999999977654 4689
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee-e-eeccccccceeEEeeCC-C----------------------
Q 023642 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME-S-LANVTEIHDGLDFSAAD-D---------------------- 223 (279)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~-~-~~~~~~~~~~~~~~~~~-~---------------------- 223 (279)
...|.+++|+|++++|++++.|++|++||++++... . +.........+.|.+.. .
T Consensus 97 ~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~ 176 (304)
T 2ynn_A 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176 (304)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS
T ss_pred CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 999999999999999999999999999999876432 1 11111111222333211 1
Q ss_pred ----CCccccEEEEEEec--CCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 224 ----GGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 224 ----~~~~~~v~~~~~sp--~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
.+|...+..+.|+| ++++|++++.|++|++||+++++++.++.+|...|.++..
T Consensus 177 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~ 236 (304)
T 2ynn_A 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236 (304)
T ss_dssp EEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred ceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEE
Confidence 23556788999986 7789999999999999999999999999999999988764
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=181.87 Aligned_cols=174 Identities=16% Similarity=0.181 Sum_probs=138.5
Q ss_pred eccccceEeeeeecCCC-----CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEE
Q 023642 100 SAADCCHMLSRYLPVNG-----PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD 174 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~-----~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 174 (279)
.+.|+.+.+|++..... ...+.+|...|.+++|+|++++|++|+.|++|++||+.+++.+.. +.+|...|.+
T Consensus 36 ~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~---~~~h~~~v~~ 112 (319)
T 3frx_A 36 ASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR---FVGHKSDVMS 112 (319)
T ss_dssp EETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE---EECCSSCEEE
T ss_pred ecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEE---EccCCCcEEE
Confidence 56789999999865332 235789999999999999999999999999999999999977654 4689999999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEE--------------eeCCC-----------------
Q 023642 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDF--------------SAADD----------------- 223 (279)
Q Consensus 175 ~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--------------~~~~~----------------- 223 (279)
++|+|++.+|++++.|++|++||++......+.........+.+ .+..+
T Consensus 113 ~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 192 (319)
T 3frx_A 113 VDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192 (319)
T ss_dssp EEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee
Confidence 99999999999999999999999976543322211111111111 11111
Q ss_pred CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 224 ~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
.+|...|.+++|+|+|++|++++.|++|++||+.+++++.++..+ ..|.++..
T Consensus 193 ~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~ 245 (319)
T 3frx_A 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAF 245 (319)
T ss_dssp CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEE
Confidence 468889999999999999999999999999999999999999865 56776654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-25 Score=188.15 Aligned_cols=169 Identities=16% Similarity=0.079 Sum_probs=136.3
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeEEeeeeeccC
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKS 167 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 167 (279)
.+++++.+ .+.|+.+.+|++........+.+|.+.|++++|+|++. +|++++.|++|++||+.+++...... ...
T Consensus 134 ~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~ 212 (344)
T 4gqb_B 134 SVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG-CSA 212 (344)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeee-cce
Confidence 46777765 46788999999877666677899999999999999874 78999999999999999987765532 345
Q ss_pred CCcceEEEEECCC-CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCC-CEEEEe
Q 023642 168 LRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAG 245 (279)
Q Consensus 168 ~~~~v~~~~~sp~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~t~ 245 (279)
+...+.+++|+|+ +++|++++.|+.|++||+++++.... +. +|...|++++|+|++ ++|++|
T Consensus 213 ~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~-----------~~-----~h~~~v~~v~fsp~g~~~lasg 276 (344)
T 4gqb_B 213 PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS-----------SA-----VHSQCVTGLVFSPHSVPFLASL 276 (344)
T ss_dssp -CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE-----------EE-----CCSSCEEEEEECSSSSCCEEEE
T ss_pred eeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE-----------Ec-----CCCCCEEEEEEccCCCeEEEEE
Confidence 5567999999995 56889999999999999998876432 22 266699999999997 579999
Q ss_pred cCCCeEEEEECCCCeEEEEEeCCCcceeEEEee
Q 023642 246 SSDDCIYVYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 246 s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
+.|++|+|||+.+++++ .+.+|.+.|+++..+
T Consensus 277 s~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~s 308 (344)
T 4gqb_B 277 SEDCSLAVLDSSLSELF-RSQAHRDFVRDATWS 308 (344)
T ss_dssp ETTSCEEEECTTCCEEE-EECCCSSCEEEEEEC
T ss_pred eCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEe
Confidence 99999999999988764 678999999998753
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-24 Score=184.25 Aligned_cols=178 Identities=15% Similarity=0.201 Sum_probs=148.2
Q ss_pred hhhhccccC-----ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 023642 83 VKMLAGREG-----NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE 154 (279)
Q Consensus 83 ~~~~~~~~~-----~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~ 154 (279)
.+.+.+|.. .+++++.+ .+.|+.+.+|+.........+..|...|.+++|+|++++|++|+.|+.|++||+.
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~ 127 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECc
Confidence 345666654 35677664 5678999999987777677789999999999999999999999999999999998
Q ss_pred CCeE-EeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEE
Q 023642 155 RGWK-IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSL 233 (279)
Q Consensus 155 ~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 233 (279)
++.. ......+.+|.+.|.++.|+|++. +++++.|+.|++||+.+++..... . +|...|.++
T Consensus 128 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~-----------~-----~h~~~v~~~ 190 (340)
T 1got_B 128 TREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTF-----------T-----GHTGDVMSL 190 (340)
T ss_dssp TCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEE-----------C-----CCSSCEEEE
T ss_pred cCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEE-----------c-----CCCCceEEE
Confidence 7531 112223568999999999998875 889999999999999988764322 1 266799999
Q ss_pred EEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 234 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 234 ~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+|+|++++|++|+.|++|++||+++++++.++.+|...|+++..
T Consensus 191 ~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~ 234 (340)
T 1got_B 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF 234 (340)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEE
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEE
Confidence 99999999999999999999999999999999999999998865
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=184.56 Aligned_cols=172 Identities=11% Similarity=0.042 Sum_probs=138.6
Q ss_pred ccCCCCee---eccccceEeeeeecCCCC---ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeec
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGP---WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA 165 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~---~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 165 (279)
.+++++.+ .+.|+.+.+|+....... ....+|...|.+++|+|++++|++|+.|+.|++||+..+... ....+
T Consensus 23 ~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~-~~~~~ 101 (345)
T 3fm0_A 23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFE-CVTTL 101 (345)
T ss_dssp EECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EE-EEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeE-EEEEc
Confidence 35666654 467899999998654321 223689999999999999999999999999999999876422 12335
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe
Q 023642 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~ 245 (279)
.+|...|.+++|+|++++|++++.|+.|++||+.++........ +. +|...|.+++|+|++++|+++
T Consensus 102 ~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--------~~-----~h~~~v~~~~~~p~~~~l~s~ 168 (345)
T 3fm0_A 102 EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV--------LN-----SHTQDVKHVVWHPSQELLASA 168 (345)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE--------EC-----CCCSCEEEEEECSSSSCEEEE
T ss_pred cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE--------ec-----CcCCCeEEEEECCCCCEEEEE
Confidence 78999999999999999999999999999999987654222111 11 266699999999999999999
Q ss_pred cCCCeEEEEECCCCe--EEEEEeCCCcceeEEEe
Q 023642 246 SSDDCIYVYDLEANK--LSLRILAHTVNIALWIT 277 (279)
Q Consensus 246 s~d~~i~vwd~~~~~--~~~~~~~h~~~v~~v~~ 277 (279)
+.|++|++||+++++ +..++.+|...|+++..
T Consensus 169 s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~ 202 (345)
T 3fm0_A 169 SYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF 202 (345)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred eCCCcEEEEEecCCCEEEEEEecCCCCceEEEEE
Confidence 999999999998875 56789999999998865
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=188.29 Aligned_cols=166 Identities=14% Similarity=0.194 Sum_probs=144.1
Q ss_pred cCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR 169 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 169 (279)
+++++.+ .+.|+.+.+|++........+.+|...|.+++|+|++++|++|+.|++|++||+.++.++.. +.+|.
T Consensus 158 ~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~---~~~h~ 234 (410)
T 1vyh_C 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT---FTGHR 234 (410)
T ss_dssp ECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE---EECCS
T ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE---EeCCC
Confidence 4566654 56788999999866555566889999999999999999999999999999999999987654 46888
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-----------
Q 023642 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----------- 238 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----------- 238 (279)
..|.+++|+|++.+|++++.|+.|++||+.+++...... +|...|.+++|+|+
T Consensus 235 ~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~~~~~~~~~ 298 (410)
T 1vyh_C 235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR----------------EHRHVVECISWAPESSYSSISEATG 298 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC----------------CCSSCEEEEEECCSCGGGGGGGCCS
T ss_pred ccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec----------------CCCceEEEEEEcCcccccchhhhcc
Confidence 899999999999999999999999999999887643221 26668999999996
Q ss_pred ---------CCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 239 ---------GRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 239 ---------g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
|.+|++|+.|++|++||+++++++.++.+|...|+++..
T Consensus 299 ~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~ 346 (410)
T 1vyh_C 299 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 346 (410)
T ss_dssp CC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred ccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEE
Confidence 678999999999999999999999999999999998864
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-25 Score=184.35 Aligned_cols=160 Identities=24% Similarity=0.329 Sum_probs=140.7
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.|+.+.+|++........+..|...+.+++|+|++++|++|+.|+.|++||+.++..... +..|...|.+++|+|
T Consensus 98 ~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~---~~~~~~~v~~~~~sp 174 (321)
T 3ow8_A 98 SSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS---LDTRGKFILSIAYSP 174 (321)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE---EECSSSCEEEEEECT
T ss_pred EeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE---ecCCCceEEEEEECC
Confidence 46789999999877666667889999999999999999999999999999999999876554 356777899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
++++|++++.|+.|++||+++++...... +|...|.+++|+|++++|++++.|++|++||++++
T Consensus 175 dg~~lasg~~dg~i~iwd~~~~~~~~~~~----------------~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 175 DGKYLASGAIDGIINIFDIATGKLLHTLE----------------GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEEC----------------CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEc----------------ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence 99999999999999999999887643221 26668999999999999999999999999999999
Q ss_pred eEEEEEeCCCcceeEEEee
Q 023642 260 KLSLRILAHTVNIALWITC 278 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v~~~ 278 (279)
+++.++.+|...|.++..+
T Consensus 239 ~~~~~~~~h~~~v~~~~~s 257 (321)
T 3ow8_A 239 NLAGTLSGHASWVLNVAFC 257 (321)
T ss_dssp CEEEEECCCSSCEEEEEEC
T ss_pred ceeEEEcCCCCceEEEEEC
Confidence 9999999999999988653
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-24 Score=183.03 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=139.5
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (279)
.+.|+.+.+|++........+.+|...|.+++|+| ++++|++|+.|++|++||+.+++++.. +..|...|.+++|
T Consensus 172 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~---~~~h~~~v~~v~~ 248 (354)
T 2pbi_B 172 ASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA---FETHESDVNSVRY 248 (354)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE---ECCCSSCEEEEEE
T ss_pred EeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE---ecCCCCCeEEEEE
Confidence 56788999999877666677899999999999988 578999999999999999999977654 4688899999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 178 sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
+|++.+|++++.|++|++||++.+......... .+...+.+++|+|+|++|++++.|++|++||+.
T Consensus 249 ~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~--------------~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~ 314 (354)
T 2pbi_B 249 YPSGDAFASGSDDATCRLYDLRADREVAIYSKE--------------SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL 314 (354)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCT--------------TCCSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC--------------CcccceeEEEEeCCCCEEEEEECCCcEEEEECC
Confidence 999999999999999999999987654322110 123478999999999999999999999999999
Q ss_pred CCeEEEEEeCCCcceeEEEe
Q 023642 258 ANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 258 ~~~~~~~~~~h~~~v~~v~~ 277 (279)
+++.+..+.+|...|+++..
T Consensus 315 ~~~~~~~l~~h~~~v~~l~~ 334 (354)
T 2pbi_B 315 KGSRVSILFGHENRVSTLRV 334 (354)
T ss_dssp TCSEEEEECCCSSCEEEEEE
T ss_pred CCceEEEEECCCCcEEEEEE
Confidence 99999999999999998865
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=185.11 Aligned_cols=182 Identities=12% Similarity=0.095 Sum_probs=138.4
Q ss_pred cCCCCee--eccccceEeeeeecCCCC----ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeecc
Q 023642 93 YSGRGRF--SAADCCHMLSRYLPVNGP----WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK 166 (279)
Q Consensus 93 ~~~~~~~--~~~d~~~~~~~~~~~~~~----~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 166 (279)
+++++.+ .+.|+.+.+|++...+.. ....+|...|++++|+|++++|++|+.|+.|++||+.+++.+.. +.
T Consensus 102 ~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~---~~ 178 (357)
T 4g56_B 102 WVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKS---YN 178 (357)
T ss_dssp EETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEE---EC
T ss_pred EcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE---Ec
Confidence 5666665 567889999998765433 23458999999999999999999999999999999999977654 56
Q ss_pred CCCcceEEEEECCCCC-EEEEEeCCCeEEEEECCCCceeeeeccc---cccceeEEeeCCC-------------------
Q 023642 167 SLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVT---EIHDGLDFSAADD------------------- 223 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~------------------- 223 (279)
.|...|.+++|+|++. ++++++.|+.|++||+++++........ .....+.|.+...
T Consensus 179 ~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~ 258 (357)
T 4g56_B 179 AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN 258 (357)
T ss_dssp CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC
Confidence 8999999999999885 7899999999999999987653322211 1111222322211
Q ss_pred -------CCccccEEEEEEecCC-CEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEee
Q 023642 224 -------GGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 224 -------~~~~~~v~~~~~sp~g-~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
.+|...|++++|+|++ ++|++++.|++|+|||+++++++..+ +|...|++|..+
T Consensus 259 ~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafs 320 (357)
T 4g56_B 259 PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWS 320 (357)
T ss_dssp GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEEC
T ss_pred CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEe
Confidence 5688899999999987 57999999999999999999887655 799999998753
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-24 Score=182.36 Aligned_cols=172 Identities=15% Similarity=0.161 Sum_probs=138.0
Q ss_pred ccCCCCee---eccccceEeeeeecCCC--CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeecc
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNG--PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK 166 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~--~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 166 (279)
.+++++.+ .+.|+.+.+|+...... ...+.+|...|.+++|+|++++|++|+.|++|++||+..+........+.
T Consensus 68 ~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 147 (345)
T 3fm0_A 68 AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN 147 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC
T ss_pred EECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec
Confidence 35677664 46788999998765432 34578999999999999999999999999999999998775443334467
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
.|...|.+++|+|++++|++++.|+.|++||..++....... +. +|...|++++|+|+|++|++++
T Consensus 148 ~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~---------~~-----~h~~~v~~l~~sp~g~~l~s~s 213 (345)
T 3fm0_A 148 SHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCAT---------LE-----GHESTVWSLAFDPSGQRLASCS 213 (345)
T ss_dssp CCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEE---------EC-----CCSSCEEEEEECTTSSEEEEEE
T ss_pred CcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEE---------ec-----CCCCceEEEEECCCCCEEEEEe
Confidence 899999999999999999999999999999998776432221 11 2667999999999999999999
Q ss_pred CCCeEEEEECCC---------------CeEEEEEeC-CCcceeEEEe
Q 023642 247 SDDCIYVYDLEA---------------NKLSLRILA-HTVNIALWIT 277 (279)
Q Consensus 247 ~d~~i~vwd~~~---------------~~~~~~~~~-h~~~v~~v~~ 277 (279)
.|++|++||... .+++.++.+ |...|+++..
T Consensus 214 ~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 260 (345)
T 3fm0_A 214 DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW 260 (345)
T ss_dssp TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEE
T ss_pred CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEE
Confidence 999999999632 245667766 8888887764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=181.83 Aligned_cols=172 Identities=13% Similarity=0.101 Sum_probs=129.4
Q ss_pred ccCCCCee---eccccceEeeeeecCC-------CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-CeEEe
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVN-------GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQ 160 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~-------~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~-~~~~~ 160 (279)
.+++++.+ .+.|+.+.+|+..... ....+.+|...|.+++|+|++++|++|+.|++|++||+.. +....
T Consensus 65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~ 144 (330)
T 2hes_X 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYE 144 (330)
T ss_dssp EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCE
T ss_pred EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeE
Confidence 35666654 4678999999874321 1234789999999999999999999999999999999953 22222
Q ss_pred eeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC--
Q 023642 161 KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-- 238 (279)
Q Consensus 161 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-- 238 (279)
....+.+|...|.+++|+|++.+|++++.|++|++||..++....... +. +|...|.+++|+|+
T Consensus 145 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~---------~~-----~h~~~v~~~~~~~~~~ 210 (330)
T 2hes_X 145 CISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV---------LN-----GHEGTVWSSDFDKTEG 210 (330)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE---------EC-----CCSSCEEEEEECCSSS
T ss_pred EEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEE---------cc-----CCCCcEEEEEecCCCC
Confidence 223357899999999999999999999999999999987764222211 11 26679999999998
Q ss_pred CCEEEEecCCCeEEEEECCCC--------eEEEEEeC-CCcceeEEEe
Q 023642 239 GRELVAGSSDDCIYVYDLEAN--------KLSLRILA-HTVNIALWIT 277 (279)
Q Consensus 239 g~~l~t~s~d~~i~vwd~~~~--------~~~~~~~~-h~~~v~~v~~ 277 (279)
+.+|++++.|++|++||+.++ .+...+.+ |...|.++..
T Consensus 211 ~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 258 (330)
T 2hes_X 211 VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAW 258 (330)
T ss_dssp SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEE
T ss_pred eeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEE
Confidence 778999999999999999765 56667765 8899988764
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=181.40 Aligned_cols=183 Identities=19% Similarity=0.257 Sum_probs=137.9
Q ss_pred ccCCCCee--eccccceEeeeeecCCCCceeeCC------------------CCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 023642 92 NYSGRGRF--SAADCCHMLSRYLPVNGPWPVDQT------------------TSRAYVSQFSADGSLFVAGFQASQIRIY 151 (279)
Q Consensus 92 ~~~~~~~~--~~~d~~~~~~~~~~~~~~~~l~~h------------------~~~V~~~~~spd~~~l~s~~~d~~i~iw 151 (279)
.++++|.+ .+.++.+.+|+.........+..| ...|.+++|+|++++|++|+.|+.|++|
T Consensus 71 ~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iw 150 (393)
T 1erj_A 71 KFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW 150 (393)
T ss_dssp EECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEE
Confidence 46777775 345677888876554433334333 2359999999999999999999999999
Q ss_pred EcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEee-CCC-------
Q 023642 152 DVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA-ADD------- 223 (279)
Q Consensus 152 d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~------- 223 (279)
|+.+++.+.. +.+|...|.+++|+|++++|++++.|++|++||+++++.............+.+.+ ++.
T Consensus 151 d~~~~~~~~~---~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~ 227 (393)
T 1erj_A 151 DIENRKIVMI---LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL 227 (393)
T ss_dssp ETTTTEEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET
T ss_pred ECCCCcEEEE---EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcC
Confidence 9999876554 56899999999999999999999999999999999887643332221111111211 100
Q ss_pred -------------------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCC------------CeEEEEEe
Q 023642 224 -------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA------------NKLSLRIL 266 (279)
Q Consensus 224 -------------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~------------~~~~~~~~ 266 (279)
.+|...|.+++|+|+|++|++++.|++|++||+++ +.+...+.
T Consensus 228 d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~ 307 (393)
T 1erj_A 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 307 (393)
T ss_dssp TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEE
T ss_pred CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEe
Confidence 35788999999999999999999999999999975 34677888
Q ss_pred CCCcceeEEEe
Q 023642 267 AHTVNIALWIT 277 (279)
Q Consensus 267 ~h~~~v~~v~~ 277 (279)
+|...|.++..
T Consensus 308 ~h~~~v~~~~~ 318 (393)
T 1erj_A 308 GHKDFVLSVAT 318 (393)
T ss_dssp CCSSCEEEEEE
T ss_pred cccCcEEEEEE
Confidence 99999988764
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-24 Score=182.60 Aligned_cols=183 Identities=17% Similarity=0.205 Sum_probs=146.0
Q ss_pred CccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC
Q 023642 91 GNYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS 167 (279)
Q Consensus 91 ~~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 167 (279)
..+++++.+ .+.|+.+.+|++........+.+|...|++++|+|++++|++++.|++|++||+.++++.... .
T Consensus 129 v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~----~ 204 (393)
T 1erj_A 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL----S 204 (393)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----E
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE----E
Confidence 346677665 467889999998766555668999999999999999999999999999999999999765542 3
Q ss_pred CCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeeec--------cccccceeEEeeCCC---------------
Q 023642 168 LRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLAN--------VTEIHDGLDFSAADD--------------- 223 (279)
Q Consensus 168 ~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~--------------- 223 (279)
+...+.+++|+| ++++|++++.|+.|++||++++....... .......+.|.+++.
T Consensus 205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 455799999999 89999999999999999998876533221 000111122222111
Q ss_pred ----------------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 224 ----------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 224 ----------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
.+|...|.+++|+|++++|++++.|+.|++||+.+++++..+.+|...|.++..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~ 360 (393)
T 1erj_A 285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 360 (393)
T ss_dssp C---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred CCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEe
Confidence 247778999999999999999999999999999999999999999999988764
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-24 Score=176.03 Aligned_cols=171 Identities=13% Similarity=0.131 Sum_probs=136.6
Q ss_pred ccCCCCee---eccccceEeeeeecC--CCCceeeCCCCCeEEEEECCC--CCEEEEEeCCCcEEEEEcCCCeEEeeeee
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPV--NGPWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDIL 164 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~--~~~~~l~~h~~~V~~~~~spd--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 164 (279)
.++++|.+ .+.|+.+.+|++... .....+.+|.+.|++++|+|+ +++|++|+.|++|++||+.++... ....
T Consensus 16 ~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~ 94 (297)
T 2pm7_B 16 VMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS-QIAV 94 (297)
T ss_dssp EECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC-CCEE
T ss_pred EECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE-EEEE
Confidence 35566654 467899999998643 344668999999999999874 899999999999999999877421 1123
Q ss_pred ccCCCcceEEEEECCC--CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC----
Q 023642 165 AKSLRWTVTDTSLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---- 238 (279)
Q Consensus 165 ~~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---- 238 (279)
...|...|.+++|+|+ +.+|++++.|+.|++||++++...... .+. +|...|.+++|+|+
T Consensus 95 ~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~---------~~~-----~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 95 HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI---------IID-----AHAIGVNSASWAPATIEE 160 (297)
T ss_dssp ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE---------EEE-----CCSSCEEEEEECCCC---
T ss_pred eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee---------eee-----cccCccceEeecCCcccc
Confidence 4678889999999998 899999999999999999876421110 122 26668999999997
Q ss_pred ---------CCEEEEecCCCeEEEEECCCCe----EEEEEeCCCcceeEEEe
Q 023642 239 ---------GRELVAGSSDDCIYVYDLEANK----LSLRILAHTVNIALWIT 277 (279)
Q Consensus 239 ---------g~~l~t~s~d~~i~vwd~~~~~----~~~~~~~h~~~v~~v~~ 277 (279)
+++|++|+.|++|++||+++++ ...++.+|...|+++..
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~ 212 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW 212 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEE
Confidence 5799999999999999998765 67889999999998875
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-24 Score=179.23 Aligned_cols=165 Identities=13% Similarity=0.028 Sum_probs=125.3
Q ss_pred eccccceEeeeeecCCCC--cee-eC-CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe----EEeeeeeccCCCcc
Q 023642 100 SAADCCHMLSRYLPVNGP--WPV-DQ-TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW----KIQKDILAKSLRWT 171 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~--~~l-~~-h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~ 171 (279)
.+.|+.+.+|++...... ..+ .+ |...|.+++|+|++++|++|+.|++|++||+.... .......+.+|...
T Consensus 30 ~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~ 109 (330)
T 2hes_X 30 GSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENE 109 (330)
T ss_dssp EESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----C
T ss_pred EcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCc
Confidence 467889999987653221 223 34 99999999999999999999999999999985421 01122235789999
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCC-ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCe
Q 023642 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (279)
Q Consensus 172 v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~ 250 (279)
|.+++|+|++++|++++.|++|++||+... ....... .+. +|...|.+++|+|++.+|++++.|++
T Consensus 110 V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~--------~~~-----~h~~~v~~v~~~p~~~~l~s~s~D~~ 176 (330)
T 2hes_X 110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECIS--------VLQ-----EHSQDVKHVIWHPSEALLASSSYDDT 176 (330)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEE--------EEC-----CCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEE--------Eec-----cCCCceEEEEECCCCCEEEEEcCCCe
Confidence 999999999999999999999999999543 2111111 111 26679999999999999999999999
Q ss_pred EEEEECCCC--eEEEEEeCCCcceeEEEe
Q 023642 251 IYVYDLEAN--KLSLRILAHTVNIALWIT 277 (279)
Q Consensus 251 i~vwd~~~~--~~~~~~~~h~~~v~~v~~ 277 (279)
|++||+.++ +++..+.+|...|+++..
T Consensus 177 i~iW~~~~~~~~~~~~~~~h~~~v~~~~~ 205 (330)
T 2hes_X 177 VRIWKDYDDDWECVAVLNGHEGTVWSSDF 205 (330)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred EEEEECCCCCeeEEEEccCCCCcEEEEEe
Confidence 999999876 688999999999988754
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-23 Score=174.59 Aligned_cols=165 Identities=19% Similarity=0.209 Sum_probs=140.3
Q ss_pred cCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR 169 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 169 (279)
+++++.+ .+.|+.+.+|+.........+.+|...|.+++|+|++++|++|+.|+.|++||+.+++++.. +.+|.
T Consensus 31 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~---~~~~~ 107 (312)
T 4ery_A 31 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT---LKGHS 107 (312)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---EECCS
T ss_pred ECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEE---EcCCC
Confidence 5666654 46788999999877666667899999999999999999999999999999999999877654 46788
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC
Q 023642 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~ 249 (279)
..|.+++|+|++++|++++.|+.|++||+++++...... .|...|.+++|+|++++|++++.|+
T Consensus 108 ~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
T 4ery_A 108 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------------AHSDPVSAVHFNRDGSLIVSSSYDG 171 (312)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC----------------CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec----------------CCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 899999999999999999999999999999887643221 1556899999999999999999999
Q ss_pred eEEEEECCCCeEEEEEe-CCCcceeEEE
Q 023642 250 CIYVYDLEANKLSLRIL-AHTVNIALWI 276 (279)
Q Consensus 250 ~i~vwd~~~~~~~~~~~-~h~~~v~~v~ 276 (279)
.|++||+++++++..+. .+...+.++.
T Consensus 172 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 199 (312)
T 4ery_A 172 LCRIWDTASGQCLKTLIDDDNPPVSFVK 199 (312)
T ss_dssp CEEEEETTTCCEEEEECCSSCCCEEEEE
T ss_pred cEEEEECCCCceeeEEeccCCCceEEEE
Confidence 99999999999888875 4555666554
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.6e-24 Score=192.45 Aligned_cols=186 Identities=19% Similarity=0.164 Sum_probs=144.2
Q ss_pred ccCCCCe--e--eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeee---
Q 023642 92 NYSGRGR--F--SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL--- 164 (279)
Q Consensus 92 ~~~~~~~--~--~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--- 164 (279)
.|++++. + .+.|+.+.+|+..+......+.+|.+.|.+++|+||+++|++|+.|++|++||+.++++......
T Consensus 154 ~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~ 233 (611)
T 1nr0_A 154 DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL 233 (611)
T ss_dssp EECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred EECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccc
Confidence 3566653 3 56788999998655544556889999999999999999999999999999999998876654211
Q ss_pred -ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccc----eeEE-----------------eeC-
Q 023642 165 -AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD----GLDF-----------------SAA- 221 (279)
Q Consensus 165 -~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~----~~~~-----------------~~~- 221 (279)
..+|.+.|.+++|+|++++|++++.|++|++||+.+++............ .+.+ ...
T Consensus 234 ~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~ 313 (611)
T 1nr0_A 234 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL 313 (611)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT
T ss_pred cccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC
Confidence 11789999999999999999999999999999999887643322111000 0000 000
Q ss_pred -----CCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEE-eCCCcceeEEEe
Q 023642 222 -----DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTVNIALWIT 277 (279)
Q Consensus 222 -----~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~v~~ 277 (279)
...+|...|.+++|+|+|++|++++.|++|++||+.++++...+ .+|...|.++..
T Consensus 314 ~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~ 375 (611)
T 1nr0_A 314 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 375 (611)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEE
T ss_pred CCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEE
Confidence 00357889999999999999999999999999999999887776 578888887653
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=178.95 Aligned_cols=180 Identities=16% Similarity=0.201 Sum_probs=148.3
Q ss_pred hhhhhccccCc-----cCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q 023642 82 TVKMLAGREGN-----YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDV 153 (279)
Q Consensus 82 ~~~~~~~~~~~-----~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~ 153 (279)
....+.+|... +++++.+ .+.|+.+.+|+..+......+..|...|.+++|+|++.+|++|+.|+.+++|++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~ 135 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence 34556666653 5666654 577999999998777777778899999999999999999999999999999998
Q ss_pred CCCeE---EeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccE
Q 023642 154 ERGWK---IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI 230 (279)
Q Consensus 154 ~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 230 (279)
..... ......+..|...|.+++|+|++..|++++.|++|++||+.+++.... +.+ |...|
T Consensus 136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~-----------~~~-----h~~~v 199 (354)
T 2pbi_B 136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS-----------FHG-----HGADV 199 (354)
T ss_dssp CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE-----------EEC-----CSSCE
T ss_pred eccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEE-----------EcC-----CCCCe
Confidence 64311 011122457888999999999999999999999999999999876432 222 56689
Q ss_pred EEEEEec--CCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 231 FSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 231 ~~~~~sp--~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
.+++|+| ++.+|++|+.|++|++||+++++++..+.+|...|+++..
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~ 248 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY 248 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred EEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEE
Confidence 9999987 5789999999999999999999999999999999998865
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=191.66 Aligned_cols=171 Identities=15% Similarity=0.130 Sum_probs=129.9
Q ss_pred ccCCCCee--eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeee-------
Q 023642 92 NYSGRGRF--SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD------- 162 (279)
Q Consensus 92 ~~~~~~~~--~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~------- 162 (279)
.++|+|.+ .+.++.+.+|++........+.+|.+.|++++|+|||++|++|+.|++|+|||+.++......
T Consensus 25 ~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~ 104 (611)
T 1nr0_A 25 GNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG 104 (611)
T ss_dssp EECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSS
T ss_pred eeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCC
Confidence 46777754 345678888988766777789999999999999999999999999999999998654221110
Q ss_pred ------------------------------------eeccCCCcceEEEEECCCCC-EEEEEeCCCeEEEEECCCCceee
Q 023642 163 ------------------------------------ILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMES 205 (279)
Q Consensus 163 ------------------------------------~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~ 205 (279)
..+.+|...|.+++|+|++. .|++++.|++|++||..+++...
T Consensus 105 ~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~ 184 (611)
T 1nr0_A 105 PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS 184 (611)
T ss_dssp CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE
T ss_pred ceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee
Confidence 01234555666666666654 36667777777777765544322
Q ss_pred eeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe-------CCCcceeEEEee
Q 023642 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-------AHTVNIALWITC 278 (279)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~-------~h~~~v~~v~~~ 278 (279)
. + .+|...|.+++|+|+|++|++++.|++|++||+.+++++..+. +|...|+++..+
T Consensus 185 ~-----------l-----~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s 248 (611)
T 1nr0_A 185 T-----------F-----GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248 (611)
T ss_dssp E-----------E-----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred e-----------e-----ccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC
Confidence 1 1 2377799999999999999999999999999999999999884 799999988753
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-23 Score=173.01 Aligned_cols=141 Identities=22% Similarity=0.286 Sum_probs=126.2
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
..+.+|...|++++|+|++++|++|+.|+.|++|++.+++.... +.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh---hccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 34789999999999999999999999999999999998876554 468888999999999999999999999999999
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+.+++..... . +|...|.+++|+|++++|++++.|+.|++||+++++++..+.+|...|.++..
T Consensus 94 ~~~~~~~~~~-----------~-----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 157 (312)
T 4ery_A 94 VSSGKCLKTL-----------K-----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157 (312)
T ss_dssp TTTCCEEEEE-----------E-----CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred CCCCcEEEEE-----------c-----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEE
Confidence 9988764322 1 25668999999999999999999999999999999999999999999988764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.92 E-value=5.3e-23 Score=173.85 Aligned_cols=160 Identities=13% Similarity=0.122 Sum_probs=134.0
Q ss_pred eccccceEeeeeecCCC-------CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcce
Q 023642 100 SAADCCHMLSRYLPVNG-------PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV 172 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~-------~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 172 (279)
.+.|+.+.+|++..... ...+.+|...|.+++|+|++.+|++|+.|++|++||+.+++.+.. +.+|...|
T Consensus 45 gs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~---~~~h~~~v 121 (343)
T 2xzm_R 45 GSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKR---FVGHQSEV 121 (343)
T ss_dssp EETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEE---EECCCSCE
T ss_pred EcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEE---EcCCCCcE
Confidence 56789999999865432 234789999999999999999999999999999999999877654 46899999
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCC----------CEE
Q 023642 173 TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG----------REL 242 (279)
Q Consensus 173 ~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g----------~~l 242 (279)
.+++|+|++++|++++.|+.|++||+.......... ..+|...|.+++|+|++ .+|
T Consensus 122 ~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l 187 (343)
T 2xzm_R 122 YSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAE--------------KENHSDWVSCVRYSPIMKSANKVQPFAPYF 187 (343)
T ss_dssp EEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCT--------------TTSCSSCEEEEEECCCCCSCSCCCSSCCEE
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeec--------------ccCCCceeeeeeeccccccccccCCCCCEE
Confidence 999999999999999999999999998433221110 11366789999999987 789
Q ss_pred EEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 243 VAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 243 ~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
++++.|++|++|| ..++....+.+|...|+++..
T Consensus 188 ~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~ 221 (343)
T 2xzm_R 188 ASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSI 221 (343)
T ss_dssp EEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEE
T ss_pred EEEcCCCEEEEEc-CCCceeEEEcCccccceEEEE
Confidence 9999999999999 457888899999999998865
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=184.29 Aligned_cols=186 Identities=10% Similarity=0.078 Sum_probs=136.8
Q ss_pred ccCCCCee---eccccceEeeeeecC--CCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeecc
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPV--NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK 166 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~--~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 166 (279)
.+++++.+ .+.|+.+.+|++... .....+.+|...|.+++|+|++++|++++.|+.|++||+.++..........
T Consensus 18 ~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~ 97 (377)
T 3dwl_C 18 AFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLL 97 (377)
T ss_dssp EECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECC
T ss_pred EECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEec
Confidence 35555553 346888999999876 5566788999999999999999999999999999999999876222223356
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce----eeeec-cccccceeEEeeCCC----------------C-
Q 023642 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM----ESLAN-VTEIHDGLDFSAADD----------------G- 224 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~-~~~~~~~~~~~~~~~----------------~- 224 (279)
.|...|.+++|+|++++|++++.|+.|++||+.+++. ..+.. .......+.|.+++. .
T Consensus 98 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 177 (377)
T 3dwl_C 98 RLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYV 177 (377)
T ss_dssp CCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECC
T ss_pred ccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEe
Confidence 8899999999999999999999999999999988752 22211 111112222222221 0
Q ss_pred -------------------------CccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeE----EEEEeCCCcceeEE
Q 023642 225 -------------------------GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL----SLRILAHTVNIALW 275 (279)
Q Consensus 225 -------------------------~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~----~~~~~~h~~~v~~v 275 (279)
+|...|.+++|+|++++|++++.|++|++||+.+++. +..+.+|...|.++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 257 (377)
T 3dwl_C 178 RDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSL 257 (377)
T ss_dssp SSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEE
T ss_pred cccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEE
Confidence 5778899999999999999999999999999999877 88999999999988
Q ss_pred Ee
Q 023642 276 IT 277 (279)
Q Consensus 276 ~~ 277 (279)
..
T Consensus 258 ~~ 259 (377)
T 3dwl_C 258 LW 259 (377)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-23 Score=176.66 Aligned_cols=173 Identities=18% Similarity=0.218 Sum_probs=136.2
Q ss_pred CccCCCCee-----eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeec
Q 023642 91 GNYSGRGRF-----SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA 165 (279)
Q Consensus 91 ~~~~~~~~~-----~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 165 (279)
..|+|+|++ .+.|+.+.+|+.........+ .|...|.+++|+|||++|++++.+ .+++|+..++..+... ..
T Consensus 139 v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~-~~ 215 (365)
T 4h5i_A 139 VYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARK-TD 215 (365)
T ss_dssp EEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEE-CC
T ss_pred EEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe-CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeee-ec
Confidence 357888876 124778999987655444444 478889999999999999999854 6778887777655432 34
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCC----eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCE
Q 023642 166 KSLRWTVTDTSLSPDQRHLVYASMSP----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 241 (279)
..|...|.+++|+|+++++++++.|+ .+++||+........... .+.+ |...|++++|+|||++
T Consensus 216 ~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~-------~~~~-----~~~~V~~~~~Spdg~~ 283 (365)
T 4h5i_A 216 FDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSK-------QVTN-----RFKGITSMDVDMKGEL 283 (365)
T ss_dssp CCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEE-------EEES-----SCSCEEEEEECTTSCE
T ss_pred CCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeee-------eecC-----CCCCeEeEEECCCCCc
Confidence 57888999999999999999999887 688999887664322111 1222 5568999999999999
Q ss_pred EEEecCCCeEEEEECCCCeEEEEE-eCCCcceeEEEee
Q 023642 242 LVAGSSDDCIYVYDLEANKLSLRI-LAHTVNIALWITC 278 (279)
Q Consensus 242 l~t~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~v~~~ 278 (279)
||+|+.|++|+|||+++++++.++ .+|...|++|..+
T Consensus 284 lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fS 321 (365)
T 4h5i_A 284 AVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTIS 321 (365)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEEC
T ss_pred eEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEEC
Confidence 999999999999999999999986 6999999998753
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-23 Score=176.52 Aligned_cols=166 Identities=17% Similarity=0.195 Sum_probs=135.0
Q ss_pred eccccceEeeeeecCCCCcee-----eCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCC-eEEeeeeeccCCCcce
Q 023642 100 SAADCCHMLSRYLPVNGPWPV-----DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTV 172 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l-----~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v 172 (279)
.+.|+.+.+|++........+ .+|...|.+++|+| ++.+|++|+.|++|++||+... ..+. .+.+|...|
T Consensus 176 ~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~---~~~~h~~~v 252 (380)
T 3iz6_a 176 GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR---TYHGHEGDI 252 (380)
T ss_dssp ECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCE---EECCCSSCC
T ss_pred ECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceE---EECCcCCCe
Confidence 567889999987665443333 68999999999987 8999999999999999999743 3333 356899999
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEE
Q 023642 173 TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (279)
Q Consensus 173 ~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~ 252 (279)
.+++|+|++++|++++.|++|++||++++.......... .....+...|.+++|+|+|++|++|+.|+.|+
T Consensus 253 ~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~---------~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~ 323 (380)
T 3iz6_a 253 NSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP---------DRNDNELPIVTSVAFSISGRLLFAGYSNGDCY 323 (380)
T ss_dssp CEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCC---------SSSCCSSCSCSEEEECSSSSEEEEECTTSCEE
T ss_pred EEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccc---------cccccccCceEEEEECCCCCEEEEEECCCCEE
Confidence 999999999999999999999999999987654322111 00011334689999999999999999999999
Q ss_pred EEECCCCeEEEEE----eCCCcceeEEEe
Q 023642 253 VYDLEANKLSLRI----LAHTVNIALWIT 277 (279)
Q Consensus 253 vwd~~~~~~~~~~----~~h~~~v~~v~~ 277 (279)
+||+.+++.+..+ .+|...|+++..
T Consensus 324 vwd~~~~~~~~~~~~~~~~h~~~v~~l~~ 352 (380)
T 3iz6_a 324 VWDTLLAEMVLNLGTLQNSHEGRISCLGL 352 (380)
T ss_dssp EEETTTCCEEEEECCSCSSCCCCCCEEEE
T ss_pred EEECCCCceEEEEecccCCCCCceEEEEE
Confidence 9999999998888 689999998865
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=175.07 Aligned_cols=163 Identities=13% Similarity=0.134 Sum_probs=133.2
Q ss_pred ccccceEeeeeecC----CCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEE----eeeeeccCCCcc
Q 023642 101 AADCCHMLSRYLPV----NGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWT 171 (279)
Q Consensus 101 ~~d~~~~~~~~~~~----~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~ 171 (279)
+.++.+.+|++... .....+.+|.+.|++++|+| ++++|++|+.|+.|++||+.++... .....+.+|...
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~ 133 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSC
T ss_pred cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCe
Confidence 56788999987543 23345789999999999999 9999999999999999999887321 112235688999
Q ss_pred eEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCe
Q 023642 172 VTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (279)
Q Consensus 172 v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~ 250 (279)
|.+++|+|++ ++|++++.|+.|++||+.+++....... .+|...|.+++|+|++++|++++.|+.
T Consensus 134 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------~~~~~~v~~~~~~~~~~~l~~~~~d~~ 199 (402)
T 2aq5_A 134 VGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP--------------DVHPDTIYSVDWSRDGALICTSCRDKR 199 (402)
T ss_dssp EEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT--------------TTCCSCEEEEEECTTSSCEEEEETTSE
T ss_pred EEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec--------------CCCCCceEEEEECCCCCEEEEEecCCc
Confidence 9999999998 6999999999999999998876433210 026669999999999999999999999
Q ss_pred EEEEECCCCeEEEEE-eCCCcc-eeEEEe
Q 023642 251 IYVYDLEANKLSLRI-LAHTVN-IALWIT 277 (279)
Q Consensus 251 i~vwd~~~~~~~~~~-~~h~~~-v~~v~~ 277 (279)
|++||+++++.+..+ .+|... +.++..
T Consensus 200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 228 (402)
T 2aq5_A 200 VRVIEPRKGTVVAEKDRPHEGTRPVHAVF 228 (402)
T ss_dssp EEEEETTTTEEEEEEECSSCSSSCCEEEE
T ss_pred EEEEeCCCCceeeeeccCCCCCcceEEEE
Confidence 999999999999999 788775 665543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-22 Score=169.04 Aligned_cols=142 Identities=16% Similarity=0.169 Sum_probs=120.6
Q ss_pred eeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCe--EEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 119 PVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
.+.+|.+.|++++|+|++ ++|++|+.|++|++||+.... .......+.+|...|.+++|+|++++|++++.|++|++
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~ 91 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEE
Confidence 578999999999999965 899999999999999986421 11222346789999999999999999999999999999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
||+.+++.... +. +|...|.+++|+|++.+|++++.|++|++||++ ++++.++.+|...|.++
T Consensus 92 wd~~~~~~~~~-----------~~-----~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~ 154 (319)
T 3frx_A 92 WDVATGETYQR-----------FV-----GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQV 154 (319)
T ss_dssp EETTTTEEEEE-----------EE-----CCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEE
T ss_pred EECCCCCeeEE-----------Ec-----cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEE
Confidence 99999876432 22 266799999999999999999999999999996 67888999999998876
Q ss_pred Ee
Q 023642 276 IT 277 (279)
Q Consensus 276 ~~ 277 (279)
..
T Consensus 155 ~~ 156 (319)
T 3frx_A 155 RV 156 (319)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-22 Score=186.33 Aligned_cols=162 Identities=17% Similarity=0.214 Sum_probs=138.1
Q ss_pred eccccceEeeeeecCCCC-----ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEE
Q 023642 100 SAADCCHMLSRYLPVNGP-----WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD 174 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~-----~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 174 (279)
.+.|+.+.+|++...... ..+.+|...|.+++|+|++++|++|+.|++|++||+.++..... +.+|...|.+
T Consensus 401 ~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~---~~~h~~~v~~ 477 (694)
T 3dm0_A 401 ASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRR---FVGHTKDVLS 477 (694)
T ss_dssp EETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE---EECCSSCEEE
T ss_pred EeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeE---EeCCCCCEEE
Confidence 567899999998754332 35789999999999999999999999999999999999977654 4689999999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCC--CEEEEecCCCeEE
Q 023642 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG--RELVAGSSDDCIY 252 (279)
Q Consensus 175 ~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g--~~l~t~s~d~~i~ 252 (279)
++|+|++++|++++.|++|++||+.......... ...+|...|.+++|+|++ ..|++++.|++|+
T Consensus 478 ~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~-------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~ 544 (694)
T 3dm0_A 478 VAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE-------------GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544 (694)
T ss_dssp EEECTTSSCEEEEETTSCEEEECTTSCEEEEECS-------------STTSCSSCEEEEEECSCSSSCEEEEEETTSCEE
T ss_pred EEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc-------------CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEE
Confidence 9999999999999999999999987544322111 112377799999999986 5899999999999
Q ss_pred EEECCCCeEEEEEeCCCcceeEEEe
Q 023642 253 VYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 253 vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+||+++++++..+.+|...|+++..
T Consensus 545 vwd~~~~~~~~~~~~h~~~v~~v~~ 569 (694)
T 3dm0_A 545 VWNLSNCKLRSTLAGHTGYVSTVAV 569 (694)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEE
Confidence 9999999999999999999998865
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-22 Score=182.13 Aligned_cols=163 Identities=17% Similarity=0.222 Sum_probs=134.4
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL 168 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (279)
.+++++.+ .+.|+.+.+|+. +......+.+|...|++++|+||+++|++++.|+.|++||... +.+.. +.+|
T Consensus 392 ~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~---~~~~ 466 (577)
T 2ymu_A 392 AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQT---LTGH 466 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEE---EECC
T ss_pred EECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEE---EcCC
Confidence 35677664 456778888873 3333455789999999999999999999999999999999754 34433 4688
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC
Q 023642 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d 248 (279)
...|.+++|+|++++|++++.|+.|++||.. ++.... +. +|...|++++|+|+|++|++++.|
T Consensus 467 ~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~~~~-----------~~-----~h~~~v~~l~~s~dg~~l~s~~~d 529 (577)
T 2ymu_A 467 SSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQT-----------LT-----GHSSSVRGVAFSPDGQTIASASDD 529 (577)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCEEEE-----------EE-----CCSSCEEEEEECTTSSCEEEEETT
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CCEEEE-----------Ee-----CCCCCEEEEEEcCCCCEEEEEECc
Confidence 8899999999999999999999999999964 443221 22 266699999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 249 DCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 249 ~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+.|++||. +++++.++.+|...|+++..
T Consensus 530 g~v~lwd~-~~~~~~~~~~h~~~v~~~~f 557 (577)
T 2ymu_A 530 KTVKLWNR-NGQLLQTLTGHSSSVWGVAF 557 (577)
T ss_dssp SEEEEECT-TSCEEEEEECCSSCEEEEEE
T ss_pred CEEEEEeC-CCCEEEEEcCCCCCEEEEEE
Confidence 99999996 68999999999999998865
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-22 Score=171.33 Aligned_cols=166 Identities=14% Similarity=0.081 Sum_probs=129.1
Q ss_pred cCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR 169 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 169 (279)
+++++.+ .+.|+.+.+|++........+.+|...|.+++|+|++++|++++.|++|++||+... ..........|.
T Consensus 84 ~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~ 162 (343)
T 2xzm_R 84 LSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHS 162 (343)
T ss_dssp ECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCS
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCC
Confidence 4566554 467899999998777666778999999999999999999999999999999999844 332322234788
Q ss_pred cceEEEEECCCC----------CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCC
Q 023642 170 WTVTDTSLSPDQ----------RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 239 (279)
Q Consensus 170 ~~v~~~~~sp~~----------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 239 (279)
..|.+++|+|++ .+|++++.|+.|++||.. ..... .+.+ |...|.+++|+|+|
T Consensus 163 ~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~-----------~~~~-----h~~~v~~~~~s~~g 225 (343)
T 2xzm_R 163 DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRY-----------TFKA-----HESNVNHLSISPNG 225 (343)
T ss_dssp SCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEE-----------EEEC-----CSSCEEEEEECTTS
T ss_pred ceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeE-----------EEcC-----ccccceEEEECCCC
Confidence 899999999987 789999999999999953 32211 1222 66699999999999
Q ss_pred CEEEEecCCCeEEEEECCC-CeEEEEEeCCCcceeEEEe
Q 023642 240 RELVAGSSDDCIYVYDLEA-NKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 240 ~~l~t~s~d~~i~vwd~~~-~~~~~~~~~h~~~v~~v~~ 277 (279)
++|++++.|+.|++||+.. ..+...+. +...|+++..
T Consensus 226 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~ 263 (343)
T 2xzm_R 226 KYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAF 263 (343)
T ss_dssp SEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEE
Confidence 9999999999999999943 44444443 3445666653
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-23 Score=177.60 Aligned_cols=181 Identities=17% Similarity=0.109 Sum_probs=140.7
Q ss_pred cCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR 169 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 169 (279)
+++++.+ .+.++.+.+|++........+.+|...|++++|+|++++|++|+.|+.|++||+.+++.+.. +.+|.
T Consensus 105 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~---~~~h~ 181 (420)
T 3vl1_A 105 AKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT---LIGHR 181 (420)
T ss_dssp ECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEE---EECCS
T ss_pred EecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceE---EcCCC
Confidence 3455543 45678899998765544455679999999999999999999999999999999998876554 46899
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccc---------------------------------ccee
Q 023642 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEI---------------------------------HDGL 216 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---------------------------------~~~~ 216 (279)
..|.+++|+|++++|++++.|+.|++||+++++.......... ....
T Consensus 182 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 182 ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE
Confidence 9999999999999999999999999999998876544332100 0011
Q ss_pred EEeeCCC------------------CCccccEEEEEEecCCC-EEEEecCCCeEEEEECCCCe-EEEEEeC-CCcceeEE
Q 023642 217 DFSAADD------------------GGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANK-LSLRILA-HTVNIALW 275 (279)
Q Consensus 217 ~~~~~~~------------------~~~~~~v~~~~~sp~g~-~l~t~s~d~~i~vwd~~~~~-~~~~~~~-h~~~v~~v 275 (279)
.+.+..+ .+|...|.+++|+|+++ +|++++.|+.|++||+++++ ++..+.+ |...|+++
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~ 341 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV 341 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE
T ss_pred EEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE
Confidence 1111111 34778999999999999 99999999999999999874 4778876 66677766
Q ss_pred E
Q 023642 276 I 276 (279)
Q Consensus 276 ~ 276 (279)
.
T Consensus 342 ~ 342 (420)
T 3vl1_A 342 Y 342 (420)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-22 Score=168.03 Aligned_cols=174 Identities=13% Similarity=0.021 Sum_probs=138.0
Q ss_pred eccccceEeeeeecCCCC--ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE
Q 023642 100 SAADCCHMLSRYLPVNGP--WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~--~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (279)
.+.|+.+.+|++...... ..+.+|...|.+++|+|++++|++++.|+.|++||+.+++... ...|...|.+++|
T Consensus 60 ~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~ 135 (368)
T 3mmy_A 60 GSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHW 135 (368)
T ss_dssp EETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEE
T ss_pred ECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEE
Confidence 456889999998763333 4678999999999999999999999999999999999987654 3468889999999
Q ss_pred --CCCCCEEEEEeCCCeEEEEECCCCceeeeeccccc------------------------------------------c
Q 023642 178 --SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEI------------------------------------------H 213 (279)
Q Consensus 178 --sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------------------------------------------~ 213 (279)
+|++++|++++.|+.|++||+++++.......... .
T Consensus 136 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 215 (368)
T 3mmy_A 136 IKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQH 215 (368)
T ss_dssp EECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCE
T ss_pred EeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCC
Confidence 99999999999999999999988764322211000 0
Q ss_pred cee------------EEeeCCC--------------------CCccc------------cEEEEEEecCCCEEEEecCCC
Q 023642 214 DGL------------DFSAADD--------------------GGYSF------------GIFSLKFSTDGRELVAGSSDD 249 (279)
Q Consensus 214 ~~~------------~~~~~~~--------------------~~~~~------------~v~~~~~sp~g~~l~t~s~d~ 249 (279)
... ...+..+ .+|.. .|.+++|+|++++|++++.|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg 295 (368)
T 3mmy_A 216 RCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG 295 (368)
T ss_dssp EEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS
T ss_pred ceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC
Confidence 000 0000000 12333 699999999999999999999
Q ss_pred eEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 250 CIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
.|++||+.+++++..+.+|...|+++..
T Consensus 296 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 323 (368)
T 3mmy_A 296 RFSFWDKDARTKLKTSEQLDQPISACCF 323 (368)
T ss_dssp CEEEEETTTTEEEEECCCCSSCEEEEEE
T ss_pred eEEEEECCCCcEEEEecCCCCCceEEEE
Confidence 9999999999999999999999998875
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-23 Score=174.51 Aligned_cols=152 Identities=14% Similarity=0.100 Sum_probs=121.2
Q ss_pred ccCCCCee--eccccceEeeeeecCCCC--ceeeCCCCCeEEEEECCCCCEEEEEeCCC----cEEEEEcCCCeEE-eee
Q 023642 92 NYSGRGRF--SAADCCHMLSRYLPVNGP--WPVDQTTSRAYVSQFSADGSLFVAGFQAS----QIRIYDVERGWKI-QKD 162 (279)
Q Consensus 92 ~~~~~~~~--~~~d~~~~~~~~~~~~~~--~~l~~h~~~V~~~~~spd~~~l~s~~~d~----~i~iwd~~~~~~~-~~~ 162 (279)
.|+++|.+ .+.++.+.+|........ ....+|...|.+++|+|+++++++++.|+ .+++|++..+... ...
T Consensus 183 ~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~ 262 (365)
T 4h5i_A 183 HFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRS 262 (365)
T ss_dssp EECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEE
T ss_pred EEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceee
Confidence 46788776 345666666665544332 23467899999999999999999999887 6889998776432 223
Q ss_pred eeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEE
Q 023642 163 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (279)
Q Consensus 163 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 242 (279)
..+.+|...|++++|+|||++||+|+.|++|+|||+++++...... .+|...|++++|+|||++|
T Consensus 263 ~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~---------------~gH~~~V~~v~fSpdg~~l 327 (365)
T 4h5i_A 263 KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK---------------QAHSFAITEVTISPDSTYV 327 (365)
T ss_dssp EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET---------------TSSSSCEEEEEECTTSCEE
T ss_pred eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec---------------CcccCCEEEEEECCCCCEE
Confidence 3456888899999999999999999999999999999988643211 1377899999999999999
Q ss_pred EEecCCCeEEEEECCC
Q 023642 243 VAGSSDDCIYVYDLEA 258 (279)
Q Consensus 243 ~t~s~d~~i~vwd~~~ 258 (279)
+++|.|++|+|||++.
T Consensus 328 aS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 328 ASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEETTSEEEEEECCT
T ss_pred EEEeCCCeEEEEEcCC
Confidence 9999999999999964
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-23 Score=174.00 Aligned_cols=171 Identities=11% Similarity=0.084 Sum_probs=134.7
Q ss_pred cCCCCee---eccccceEeeeeecCCC--CceeeCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCeEEeeeeec
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVNG--PWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILA 165 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~~--~~~l~~h~~~V~~~~~sp--d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 165 (279)
+++++.+ .+.|+.+.+|++..... ...+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++.... ...+
T Consensus 21 ~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~-~~~~ 99 (316)
T 3bg1_A 21 MDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEK-SHEH 99 (316)
T ss_dssp ECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCE-EEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceE-EEEc
Confidence 4455543 46788999999875432 345789999999999986 48999999999999999998864211 1235
Q ss_pred cCCCcceEEEEECCC--CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-----
Q 023642 166 KSLRWTVTDTSLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----- 238 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----- 238 (279)
.+|...|.+++|+|+ +.+|++++.|+.|++||++.+......... .+|...|.+++|+|+
T Consensus 100 ~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~-------------~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 100 AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN-------------NAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBT-------------TSSSSCBCCCEECCCCCC--
T ss_pred cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeee-------------ccccCCcceEEEccccCCcc
Confidence 689999999999998 789999999999999999876422111111 126668899999997
Q ss_pred ------------CCEEEEecCCCeEEEEECCCC---eEEEEEeCCCcceeEEEe
Q 023642 239 ------------GRELVAGSSDDCIYVYDLEAN---KLSLRILAHTVNIALWIT 277 (279)
Q Consensus 239 ------------g~~l~t~s~d~~i~vwd~~~~---~~~~~~~~h~~~v~~v~~ 277 (279)
+++|++|+.|++|++||++.+ +++..+.+|...|+++..
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~ 220 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW 220 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEEC
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEe
Confidence 478999999999999999765 578889999999998864
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-22 Score=178.60 Aligned_cols=180 Identities=18% Similarity=0.261 Sum_probs=141.3
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL 168 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (279)
.++|+|++ .+.|+.+.+|+. ..+....+.+|...|++++|+||+++|++++.|++|++||+. ++.+.. +.+|
T Consensus 23 a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~~~~~~---~~~~ 97 (577)
T 2ymu_A 23 AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQT---LTGH 97 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEE---ECCC
T ss_pred EECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-CCEEEE---EECC
Confidence 36777765 456788999983 444556689999999999999999999999999999999965 445443 5689
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC------------------------C
Q 023642 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD------------------------G 224 (279)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~ 224 (279)
...|.+++|+|++++|++++.|+.+++|+....................+.++.. .
T Consensus 98 ~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (577)
T 2ymu_A 98 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 177 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeecc
Confidence 9999999999999999999999999999987655433222211111111111111 3
Q ss_pred CccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 225 ~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
.|...|.++.|+|++++|++++.|+.|++||. +++.+..+.+|...|.++..
T Consensus 178 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~ 229 (577)
T 2ymu_A 178 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAF 229 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEE
T ss_pred CCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEE
Confidence 46678999999999999999999999999996 57889999999999998764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-22 Score=166.45 Aligned_cols=185 Identities=11% Similarity=0.071 Sum_probs=140.4
Q ss_pred cCCCCee---eccccceEeeeeecCCCC----ceeeCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCeE-----
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVNGP----WPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWK----- 158 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~~~----~~l~~h~~~V~~~~~sp--d~~~l~s~~~d~~i~iwd~~~~~~----- 158 (279)
+++++.+ .+.|+.+.+|++...... ..+.+|...|++++|+| ++++|++|+.|+.|++||+.++..
T Consensus 19 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 98 (351)
T 3f3f_A 19 YDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGR 98 (351)
T ss_dssp ECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSC
T ss_pred EcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccccc
Confidence 4555543 456888999998765433 33579999999999999 699999999999999999987631
Q ss_pred -EeeeeeccCCCcceEEEEECCC--CCEEEEEeCCCeEEEEECCCCceeeeecc--------------ccccceeEEeeC
Q 023642 159 -IQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANV--------------TEIHDGLDFSAA 221 (279)
Q Consensus 159 -~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--------------~~~~~~~~~~~~ 221 (279)
.........|...|.+++|+|+ +.+|++++.|+.|++||+++++....... ......+.+.+.
T Consensus 99 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 178 (351)
T 3f3f_A 99 RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPS 178 (351)
T ss_dssp SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCC
T ss_pred CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccC
Confidence 1122335688899999999999 99999999999999999987764211110 000001111111
Q ss_pred ------------------------------CCCCccccEEEEEEecCC----CEEEEecCCCeEEEEECCCC--------
Q 023642 222 ------------------------------DDGGYSFGIFSLKFSTDG----RELVAGSSDDCIYVYDLEAN-------- 259 (279)
Q Consensus 222 ------------------------------~~~~~~~~v~~~~~sp~g----~~l~t~s~d~~i~vwd~~~~-------- 259 (279)
.-.+|...|.+++|+|++ ++|++++.|+.|++||++++
T Consensus 179 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 258 (351)
T 3f3f_A 179 RFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE 258 (351)
T ss_dssp SSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------
T ss_pred CCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC
Confidence 013578899999999998 89999999999999999875
Q ss_pred --------------------------------------eEEEEEeCCCcceeEEEe
Q 023642 260 --------------------------------------KLSLRILAHTVNIALWIT 277 (279)
Q Consensus 260 --------------------------------------~~~~~~~~h~~~v~~v~~ 277 (279)
+++..+.+|...|+++..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 314 (351)
T 3f3f_A 259 SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW 314 (351)
T ss_dssp --------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred cccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence 788889999999999875
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.6e-23 Score=178.38 Aligned_cols=170 Identities=14% Similarity=0.087 Sum_probs=130.4
Q ss_pred eccccceEeeeeecCCCCce--eeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEE
Q 023642 100 SAADCCHMLSRYLPVNGPWP--VDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~--l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 176 (279)
++.|+.+.+|++........ +.+|.+.|++++|+| ++.+|++|+.|++|++||+.++.. ........+...+.+++
T Consensus 138 Gs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~ 216 (435)
T 4e54_B 138 GSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLD 216 (435)
T ss_dssp EETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEE
T ss_pred EeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEE
Confidence 56789999999876655443 468999999999998 789999999999999999987643 23233344555788999
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC-----------------------------CCcc
Q 023642 177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD-----------------------------GGYS 227 (279)
Q Consensus 177 ~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~ 227 (279)
|+|++++|++|+.|+.|++||+++.....+.........+.|.+.+. .+|.
T Consensus 217 ~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~ 296 (435)
T 4e54_B 217 VSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHR 296 (435)
T ss_dssp EETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCS
T ss_pred ECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecc
Confidence 99999999999999999999997654322222111111222221111 3578
Q ss_pred ccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCc
Q 023642 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 228 ~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~ 270 (279)
..|++++|+|+|++|++++.|++|++||+.++.+...+.+|..
T Consensus 297 ~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 339 (435)
T 4e54_B 297 HPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH 339 (435)
T ss_dssp SCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC
T ss_pred ccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc
Confidence 8999999999999999999999999999999988888877653
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-22 Score=170.48 Aligned_cols=187 Identities=9% Similarity=0.042 Sum_probs=130.6
Q ss_pred CccCCCCeee---cc------ccceEeeeeecCCCC----ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe
Q 023642 91 GNYSGRGRFS---AA------DCCHMLSRYLPVNGP----WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW 157 (279)
Q Consensus 91 ~~~~~~~~~~---~~------d~~~~~~~~~~~~~~----~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~ 157 (279)
..|+|+|.+. +. |..+.+|+....... ....+|...|++++|+|++. +++++.|++|+|||+.+++
T Consensus 48 v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~ 126 (357)
T 4g56_B 48 VRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKE 126 (357)
T ss_dssp EEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC------
T ss_pred EEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccc
Confidence 3577887762 22 344555554433322 22467999999999999976 5567889999999998876
Q ss_pred EEeee-eeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecc-ccccceeEEeeCCC------------
Q 023642 158 KIQKD-ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV-TEIHDGLDFSAADD------------ 223 (279)
Q Consensus 158 ~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~------------ 223 (279)
..... ....+|...|.+++|+|++++|++++.|+.|++||+.+++....... ......+.|.+.+.
T Consensus 127 ~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v 206 (357)
T 4g56_B 127 SLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRI 206 (357)
T ss_dssp --CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCE
T ss_pred eeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCce
Confidence 54321 23457899999999999999999999999999999998876443321 11111222222211
Q ss_pred ----------------CCccccEEEEEEecC-CCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEee
Q 023642 224 ----------------GGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 224 ----------------~~~~~~v~~~~~sp~-g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
..|...+.+++|+|+ +.+|++|+.|+.|++||+++++++.++.+|...|+++..+
T Consensus 207 ~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~s 278 (357)
T 4g56_B 207 LLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYS 278 (357)
T ss_dssp EECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEEC
T ss_pred EEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEc
Confidence 235667999999998 5688899999999999999999999999999999998753
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-22 Score=166.23 Aligned_cols=142 Identities=18% Similarity=0.125 Sum_probs=117.1
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC--eEEeeeeeccCCCcceEEEEECCC--CCEEEEEeCCCeEE
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVH 194 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~ 194 (279)
++.+|.+.|++++|+|+|++|++|+.|++|+|||+... +.+. .+.+|.++|.+++|+|+ +++|++++.|++|+
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~---~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLID---TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCE---EECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEE---EEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 46789999999999999999999999999999999753 2222 35789999999999864 89999999999999
Q ss_pred EEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC--CCEEEEecCCCeEEEEECCCCe--EEEEEeCCCc
Q 023642 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANK--LSLRILAHTV 270 (279)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~t~s~d~~i~vwd~~~~~--~~~~~~~h~~ 270 (279)
+||+.+++...... +. +|...|.+++|+|+ +.+|++++.|++|++||++++. ....+.+|..
T Consensus 81 iWd~~~~~~~~~~~---------~~-----~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~ 146 (297)
T 2pm7_B 81 IWKEENGRWSQIAV---------HA-----VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (297)
T ss_dssp EEEBSSSCBCCCEE---------EC-----CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS
T ss_pred EEEcCCCceEEEEE---------ee-----cCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC
Confidence 99998875322111 11 26669999999998 8999999999999999998763 2467789999
Q ss_pred ceeEEEe
Q 023642 271 NIALWIT 277 (279)
Q Consensus 271 ~v~~v~~ 277 (279)
.|+++..
T Consensus 147 ~v~~~~~ 153 (297)
T 2pm7_B 147 GVNSASW 153 (297)
T ss_dssp CEEEEEE
T ss_pred ccceEee
Confidence 9888754
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-21 Score=161.57 Aligned_cols=181 Identities=12% Similarity=0.096 Sum_probs=144.6
Q ss_pred cCCCCee---eccccceEeeeeecCC--CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS 167 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 167 (279)
+++++.+ .+.++.+.+|++.... ....+..|...|.+++|+|++++|++++.|+.|++||+.+++.... +..
T Consensus 105 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~---~~~ 181 (337)
T 1gxr_A 105 LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ---FQG 181 (337)
T ss_dssp ECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---ECC
T ss_pred EcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee---eec
Confidence 4556543 4567889999887655 2345788999999999999999999999999999999999876654 457
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC------------------------
Q 023642 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD------------------------ 223 (279)
Q Consensus 168 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 223 (279)
|...|.+++|+|++++|++++.|+.|++||+++++.............+.|.+++.
T Consensus 182 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 261 (337)
T 1gxr_A 182 HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE
Confidence 88899999999999999999999999999999887754443333333333333322
Q ss_pred CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 224 ~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
..|...|.+++|+|++++|++++.|+.|++||+.+++.+... .|...|.++..
T Consensus 262 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~ 314 (337)
T 1gxr_A 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDI 314 (337)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEE
T ss_pred cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEE
Confidence 457889999999999999999999999999999999888554 47788887754
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-21 Score=162.47 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=120.1
Q ss_pred eeeCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeEE--eeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 119 PVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd-~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
+|.||.+.|++++|+|+ +++|+||+.|++|+|||+.+.+.. .....+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~ 112 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence 58899999999999997 689999999999999999865321 122235789999999999999999999999999999
Q ss_pred EECCCCceeeeecccccc--------------------------------------------ceeEEeeCC---------
Q 023642 196 VDVGSGTMESLANVTEIH--------------------------------------------DGLDFSAAD--------- 222 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~--------- 222 (279)
|+................ ....|....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~ 192 (340)
T 4aow_A 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192 (340)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred EeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence 988765542221110000 000011000
Q ss_pred -C-----------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 223 -D-----------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 223 -~-----------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
+ .+|...|++++|+|++++|++++.|++|++||+++++++..+.++ ..|.++.
T Consensus 193 ~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~ 263 (340)
T 4aow_A 193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALC 263 (340)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEE
T ss_pred CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeee
Confidence 0 568889999999999999999999999999999999999999865 4566554
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-22 Score=172.42 Aligned_cols=148 Identities=18% Similarity=0.142 Sum_probs=120.9
Q ss_pred eccccceEeeeeec-CCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeec----cCCCcceEE
Q 023642 100 SAADCCHMLSRYLP-VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA----KSLRWTVTD 174 (279)
Q Consensus 100 ~~~d~~~~~~~~~~-~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~ 174 (279)
.+.|+.+.+|++.. ......+.+|.+.|++++|+|++++|++|+.|++|++||+.++..+...... ..+...|++
T Consensus 224 gs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~ 303 (380)
T 3iz6_a 224 GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTS 303 (380)
T ss_dssp EETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSE
T ss_pred EECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEE
Confidence 46788999999864 3455678999999999999999999999999999999999999776543211 112235899
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEE
Q 023642 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (279)
Q Consensus 175 ~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vw 254 (279)
++|+|+|++|++++.|+.|++||+..++........ ..+|...|.+++|+|+|++|++|+.|++|++|
T Consensus 304 ~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~------------~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 304 VAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL------------QNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS------------CSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred EEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc------------cCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence 999999999999999999999999887764322110 11377799999999999999999999999999
Q ss_pred ECCCC
Q 023642 255 DLEAN 259 (279)
Q Consensus 255 d~~~~ 259 (279)
++...
T Consensus 372 ~~~~~ 376 (380)
T 3iz6_a 372 AFSGH 376 (380)
T ss_dssp ECCSS
T ss_pred ecCCC
Confidence 98764
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-22 Score=184.19 Aligned_cols=168 Identities=19% Similarity=0.173 Sum_probs=138.7
Q ss_pred cCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR 169 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 169 (279)
+++++.+ .+.|+.+.+|++........+.+|...|.+++|+|++++|++|+.|++|++||..............+|.
T Consensus 438 ~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~ 517 (694)
T 3dm0_A 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517 (694)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCS
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCC
Confidence 5677665 4678899999987666666789999999999999999999999999999999987654333222335788
Q ss_pred cceEEEEECCCC--CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC
Q 023642 170 WTVTDTSLSPDQ--RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (279)
Q Consensus 170 ~~v~~~~~sp~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~ 247 (279)
..|.+++|+|++ ..|++++.|++|++||+++++..... . +|...|++++|+|++++|++++.
T Consensus 518 ~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~-----------~-----~h~~~v~~v~~spdg~~l~sg~~ 581 (694)
T 3dm0_A 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL-----------A-----GHTGYVSTVAVSPDGSLCASGGK 581 (694)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE-----------C-----CCSSCEEEEEECTTSSEEEEEET
T ss_pred CcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE-----------c-----CCCCCEEEEEEeCCCCEEEEEeC
Confidence 899999999987 57999999999999999987764322 1 26779999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 248 DDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 248 d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
|++|++||+++++++..+..+ ..|.++..
T Consensus 582 Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~ 610 (694)
T 3dm0_A 582 DGVVLLWDLAEGKKLYSLEAN-SVIHALCF 610 (694)
T ss_dssp TSBCEEEETTTTEEEECCBCS-SCEEEEEE
T ss_pred CCeEEEEECCCCceEEEecCC-CcEEEEEE
Confidence 999999999999998888754 45666543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=166.61 Aligned_cols=172 Identities=8% Similarity=0.023 Sum_probs=140.5
Q ss_pred cCCCCee---eccccceEeeeeecCC--CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS 167 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 167 (279)
+++++.+ .+.++.+.+|++.... ....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.... .....
T Consensus 16 ~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~ 94 (372)
T 1k8k_C 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT-LVILR 94 (372)
T ss_dssp ECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE-EECCC
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee-EEeec
Confidence 3445443 4468889999987665 5566889999999999999999999999999999999988864433 23467
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC
Q 023642 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (279)
Q Consensus 168 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~ 247 (279)
|...|.+++|+|++++|++++.|+.|++||+..+......... ..+|...|.+++|+|++++|++++.
T Consensus 95 ~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~------------~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 95 INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI------------KKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE------------CTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee------------ecccCCCeeEEEEcCCCCEEEEEcC
Confidence 8889999999999999999999999999999887632111110 0125669999999999999999999
Q ss_pred CCeEEEEEC------------------CCCeEEEEEeCCCcceeEEEe
Q 023642 248 DDCIYVYDL------------------EANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 248 d~~i~vwd~------------------~~~~~~~~~~~h~~~v~~v~~ 277 (279)
|+.|++||+ ..++++..+.+|...|+++..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 210 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF 210 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEE
Confidence 999999995 478899999999999998865
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-22 Score=171.92 Aligned_cols=185 Identities=15% Similarity=0.113 Sum_probs=144.7
Q ss_pred cCCCCee---eccccceEeeeeecC----CCCceeeCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCe------E
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPV----NGPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGW------K 158 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~----~~~~~l~~h~~~V~~~~~spd-~~~l~s~~~d~~i~iwd~~~~~------~ 158 (279)
+++++.+ .+.|+.+.+|++... .....+.+|...|.+++|+|+ +++|++++.|+.|++||+.++. .
T Consensus 75 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 154 (416)
T 2pm9_A 75 WSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT 154 (416)
T ss_dssp ECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCC
T ss_pred ECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccc
Confidence 4555543 456889999998762 233457899999999999998 8999999999999999999875 3
Q ss_pred EeeeeeccCCCcceEEEEECCC-CCEEEEEeCCCeEEEEECCCCceeeeeccc-------cccceeEEeeCC--------
Q 023642 159 IQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVT-------EIHDGLDFSAAD-------- 222 (279)
Q Consensus 159 ~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~~~~~~~~~~-------- 222 (279)
.........|...|.+++|+|+ +.+|++++.|+.|++||+++++........ .....+.|.+.+
T Consensus 155 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 234 (416)
T 2pm9_A 155 PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT 234 (416)
T ss_dssp CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE
T ss_pred ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEE
Confidence 3222234578889999999999 789999999999999999987764333221 111112222111
Q ss_pred ------C----------------C-CccccEEEEEEec-CCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 223 ------D----------------G-GYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 223 ------~----------------~-~~~~~v~~~~~sp-~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
. . +|...|.+++|+| ++++|++++.|+.|++||+++++++..+.+|...|+++..
T Consensus 235 ~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~ 313 (416)
T 2pm9_A 235 GSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKF 313 (416)
T ss_dssp CCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEE
T ss_pred CCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEE
Confidence 1 3 6888999999999 8999999999999999999999999999999999988765
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-21 Score=169.28 Aligned_cols=174 Identities=17% Similarity=0.241 Sum_probs=140.3
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC-
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS- 178 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s- 178 (279)
++.|+.+.+|++........+.+|.+.|.+++|+|++ +|++|+.|++|++||+.+++++.. +.+|...|.+++|+
T Consensus 138 gs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~---~~~h~~~v~~l~~~~ 213 (464)
T 3v7d_B 138 GADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHV---FEGHNSTVRCLDIVE 213 (464)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEE---ECCCCCccEEEEEec
Confidence 4678899999987776667788999999999999988 999999999999999999976654 46899999999998
Q ss_pred -CCCCEEEEEeCCCeEEEEECCCCceeeeec--------------------ccccc----------ceeEEeeCCC----
Q 023642 179 -PDQRHLVYASMSPIVHIVDVGSGTMESLAN--------------------VTEIH----------DGLDFSAADD---- 223 (279)
Q Consensus 179 -p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------------------~~~~~----------~~~~~~~~~~---- 223 (279)
|++.+|++++.|+.|++||+.++....... ....+ ....+.+..+
T Consensus 214 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~ 293 (464)
T 3v7d_B 214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 293 (464)
T ss_dssp SSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEE
T ss_pred CCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEE
Confidence 578899999999999999998765321100 00000 0011111111
Q ss_pred -------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 224 -------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 224 -------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
.+|...|.+++|+|++++|++++.|+.|++||+++++++.++.+|...|.++..
T Consensus 294 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 360 (464)
T 3v7d_B 294 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 360 (464)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEE
Confidence 458889999999999999999999999999999999999999999999988754
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=166.26 Aligned_cols=170 Identities=14% Similarity=0.147 Sum_probs=137.0
Q ss_pred cCCCCee---eccccceEeeeeec--CCCCceeeCCCCCeEEEEECCC--CCEEEEEeCCCcEEEEEcCCCeEEeeeeec
Q 023642 93 YSGRGRF---SAADCCHMLSRYLP--VNGPWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILA 165 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~--~~~~~~l~~h~~~V~~~~~spd--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 165 (279)
+++++.+ .+.|+.+.+|++.. ......+.+|...|++++|+|+ +++|++|+.|+.|++||+.++..... ...
T Consensus 19 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~ 97 (379)
T 3jrp_A 19 LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQI-AVH 97 (379)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEE-EEE
T ss_pred EcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEe-eee
Confidence 4555543 45688999999873 3334557899999999999987 99999999999999999998863222 234
Q ss_pred cCCCcceEEEEECCC--CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec------
Q 023642 166 KSLRWTVTDTSLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST------ 237 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp------ 237 (279)
..|...|.+++|+|+ +.+|++++.|+.|++||+.++....... +. +|...|.+++|+|
T Consensus 98 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---------~~-----~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 98 AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---------ID-----AHAIGVNSASWAPATIEED 163 (379)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE---------EE-----CCTTCEEEEEECCCC----
T ss_pred cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE---------ec-----CCCCceEEEEEcCcccccc
Confidence 678889999999999 9999999999999999999875422211 11 1556899999999
Q ss_pred -------CCCEEEEecCCCeEEEEECCCCe----EEEEEeCCCcceeEEEe
Q 023642 238 -------DGRELVAGSSDDCIYVYDLEANK----LSLRILAHTVNIALWIT 277 (279)
Q Consensus 238 -------~g~~l~t~s~d~~i~vwd~~~~~----~~~~~~~h~~~v~~v~~ 277 (279)
++.+|++++.|+.|++||++++. ++..+.+|...|+++..
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~ 214 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW 214 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEE
Confidence 69999999999999999998653 66788899999998865
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-22 Score=165.19 Aligned_cols=144 Identities=16% Similarity=0.137 Sum_probs=120.5
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeee--ccCCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL--AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~ 196 (279)
...+|...|++++|+|++++|++++ |+.|++||+.++........ ...|...|.+++|+|++++|++++.|+.|++|
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 3568999999999999999999999 99999999987643322222 23788899999999999999999999999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
|+.+++...... +.. |...|.+++|+|++++|++++.|+.|++||+++++.+..+.+|...|.++.
T Consensus 125 d~~~~~~~~~~~---------~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 190 (337)
T 1gxr_A 125 DLAAPTPRIKAE---------LTS-----SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190 (337)
T ss_dssp ECCCC--EEEEE---------EEC-----SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred ECCCCCcceeee---------ccc-----CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEE
Confidence 999876422211 111 555899999999999999999999999999999999999999999998876
Q ss_pred e
Q 023642 277 T 277 (279)
Q Consensus 277 ~ 277 (279)
.
T Consensus 191 ~ 191 (337)
T 1gxr_A 191 I 191 (337)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-21 Score=168.46 Aligned_cols=165 Identities=13% Similarity=0.156 Sum_probs=134.4
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL 168 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (279)
.+++++.+ .+.|+.+.+|+.........+..| ..+....|+|++++|++|+.|+.|++||+.++..... +..|
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~h 138 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREI---DQAH 138 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEE---TTSS
T ss_pred eeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeee---cccc
Confidence 34554443 456888999998776666666666 5566668999999999999999999999998866543 4689
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC
Q 023642 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d 248 (279)
...|.+++|+|++++|++++.|+.|++||+.+++.... +. +|...|.+++|+|++++|++++.|
T Consensus 139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~-----------~~-----~h~~~v~~~~~~~~~~~l~s~~~d 202 (420)
T 3vl1_A 139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT-----------LI-----GHRATVTDIAIIDRGRNVLSASLD 202 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEE-----------EE-----CCSSCEEEEEEETTTTEEEEEETT
T ss_pred cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceE-----------Ec-----CCCCcEEEEEEcCCCCEEEEEcCC
Confidence 99999999999999999999999999999998775432 21 266799999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEeC---CCcceeEEE
Q 023642 249 DCIYVYDLEANKLSLRILA---HTVNIALWI 276 (279)
Q Consensus 249 ~~i~vwd~~~~~~~~~~~~---h~~~v~~v~ 276 (279)
++|++||+++++++..+.. |...|.++.
T Consensus 203 ~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 233 (420)
T 3vl1_A 203 GTIRLWECGTGTTIHTFNRKENPHDGVNSIA 233 (420)
T ss_dssp SCEEEEETTTTEEEEEECBTTBTTCCEEEEE
T ss_pred CcEEEeECCCCceeEEeecCCCCCCCccEEE
Confidence 9999999999999999985 444555443
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=9e-22 Score=185.89 Aligned_cols=172 Identities=12% Similarity=0.098 Sum_probs=134.2
Q ss_pred cCCCCee---eccccceEeeeeecCCCC--cee---------eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVNGP--WPV---------DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK 158 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~~~--~~l---------~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~ 158 (279)
+++++.+ .+.|+++.+|++...... ..+ .+|...|++++|+||+++||+|+.|++|+|||+.+++.
T Consensus 443 ~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~ 522 (902)
T 2oaj_A 443 PAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQF 522 (902)
T ss_dssp CCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC
T ss_pred ccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccc
Confidence 4566665 568999999998665321 112 18999999999999999999999999999999986621
Q ss_pred ------------------------------------------EeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 023642 159 ------------------------------------------IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (279)
Q Consensus 159 ------------------------------------------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~ 196 (279)
......+.+|.+.|++++|+||| +||+|+.|++|+||
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lw 601 (902)
T 2oaj_A 523 YSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLI 601 (902)
T ss_dssp ---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEE
T ss_pred cCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEE
Confidence 01123456799999999999999 99999999999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEe-----cCC---CEEEEecCCCeEEEEEC---CCCeEEEEE
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS-----TDG---RELVAGSSDDCIYVYDL---EANKLSLRI 265 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----p~g---~~l~t~s~d~~i~vwd~---~~~~~~~~~ 265 (279)
|++++........ .. +. .+|...|++++|+ ||| ++|++|+.|++|++||+ .+|+++.++
T Consensus 602 d~~~~~~~~~~~~-~~-----~~----~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~ 671 (902)
T 2oaj_A 602 DRRGPAIIYMENI-RE-----IS----GAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQL 671 (902)
T ss_dssp ETTTTEEEEEEEG-GG-----TC----SSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEE
T ss_pred ECCCCeEEEEeeh-hH-----hc----cccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEe
Confidence 9987765321111 00 00 1377799999999 886 89999999999999999 789999999
Q ss_pred eCCC-----cceeEE
Q 023642 266 LAHT-----VNIALW 275 (279)
Q Consensus 266 ~~h~-----~~v~~v 275 (279)
.+|. ++|.++
T Consensus 672 ~~~~~~~~~~~v~~i 686 (902)
T 2oaj_A 672 MDITNVTSKGPIHKI 686 (902)
T ss_dssp EEEEECCSSCCCCEE
T ss_pred cCceecCCCCceEEE
Confidence 8885 556554
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=168.54 Aligned_cols=144 Identities=19% Similarity=0.120 Sum_probs=112.0
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC--CCCEEEEEeCCCeEEEE
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIV 196 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~i~i~ 196 (279)
.+.+|.+.|++++|+|+|++|++|+.|++|++||+.++.... ...+.+|...|.+++|+| ++++|++++.|++|++|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~-~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQIL-IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEE-EEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEE-EEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 467899999999999999999999999999999998874321 223578999999999986 48999999999999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC--CCEEEEecCCCeEEEEECCCCe---EEEEEeCCCcc
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANK---LSLRILAHTVN 271 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~t~s~d~~i~vwd~~~~~---~~~~~~~h~~~ 271 (279)
|++++....... +. +|...|.+++|+|+ +.+|++++.|++|++||++++. ....+.+|...
T Consensus 87 d~~~~~~~~~~~---------~~-----~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~ 152 (316)
T 3bg1_A 87 REENGTWEKSHE---------HA-----GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG 152 (316)
T ss_dssp CCSSSCCCEEEE---------EC-----CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSC
T ss_pred ECCCCcceEEEE---------cc-----CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCC
Confidence 998865322211 11 26679999999998 8899999999999999998753 23556688888
Q ss_pred eeEEEe
Q 023642 272 IALWIT 277 (279)
Q Consensus 272 v~~v~~ 277 (279)
|+++..
T Consensus 153 v~~~~~ 158 (316)
T 3bg1_A 153 CNAVSW 158 (316)
T ss_dssp BCCCEE
T ss_pred cceEEE
Confidence 776643
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-21 Score=165.40 Aligned_cols=159 Identities=11% Similarity=0.026 Sum_probs=130.4
Q ss_pred eccccceEeeeeecCCCCceee--CCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEE
Q 023642 100 SAADCCHMLSRYLPVNGPWPVD--QTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~--~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 176 (279)
.+.|+.+.+|++........+. +|...|.+++|+| ++++|++++.|+.|++||+... ..........|...|.+++
T Consensus 92 ~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~ 170 (383)
T 3ei3_B 92 GSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVD 170 (383)
T ss_dssp EEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEE
T ss_pred EcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEE
Confidence 4568899999987665555544 7999999999999 7899999999999999999964 4444333445667899999
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC-EEEEecCCCeEEEEE
Q 023642 177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYD 255 (279)
Q Consensus 177 ~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~t~s~d~~i~vwd 255 (279)
|+|++++|++++.|+.|++||++. +.... +. +|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 171 ~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~-----------~~-----~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 233 (383)
T 3ei3_B 171 VSVSRQMLATGDSTGRLLLLGLDG-HEIFK-----------EK-----LHKAKVTHAEFNPRCDWLMATSSVDATVKLWD 233 (383)
T ss_dssp EETTTTEEEEEETTSEEEEEETTS-CEEEE-----------EE-----CSSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred ECCCCCEEEEECCCCCEEEEECCC-CEEEE-----------ec-----cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEe
Confidence 999999999999999999999953 32211 11 1566999999999999 899999999999999
Q ss_pred CCC----CeEEEEEeCCCcceeEEEe
Q 023642 256 LEA----NKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 256 ~~~----~~~~~~~~~h~~~v~~v~~ 277 (279)
+++ +.++..+ +|...|+++..
T Consensus 234 ~~~~~~~~~~~~~~-~~~~~v~~~~~ 258 (383)
T 3ei3_B 234 LRNIKDKNSYIAEM-PHEKPVNAAYF 258 (383)
T ss_dssp GGGCCSTTCEEEEE-ECSSCEEEEEE
T ss_pred CCCCCcccceEEEe-cCCCceEEEEE
Confidence 998 6777777 69999998865
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-20 Score=157.10 Aligned_cols=184 Identities=14% Similarity=0.167 Sum_probs=136.8
Q ss_pred CCCCee-eccccceEeeeeecCCCCcee--eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee-------
Q 023642 94 SGRGRF-SAADCCHMLSRYLPVNGPWPV--DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI------- 163 (279)
Q Consensus 94 ~~~~~~-~~~d~~~~~~~~~~~~~~~~l--~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~------- 163 (279)
++++.+ .+.|+++.+|+....+....+ .+|...|++++|+|++++|++|+.|++|++||+.+++++....
T Consensus 34 S~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~ 113 (318)
T 4ggc_A 34 SSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG 113 (318)
T ss_dssp CTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred CCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEE
Confidence 444433 456889999998766554444 4788899999999999999999999999999999886554321
Q ss_pred -------------------------------eccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeec----
Q 023642 164 -------------------------------LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN---- 208 (279)
Q Consensus 164 -------------------------------~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---- 208 (279)
...+|...+..+.+++++++|++++.|+.|++||+++++......
T Consensus 114 ~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 193 (318)
T 4ggc_A 114 SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 193 (318)
T ss_dssp EEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEEC
T ss_pred EeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeec
Confidence 123667789999999999999999999999999998765321110
Q ss_pred -cccccceeEEee-----------CCC----------------CCccccEEEEEEecCCCEEEEec--CCCeEEEEECCC
Q 023642 209 -VTEIHDGLDFSA-----------ADD----------------GGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEA 258 (279)
Q Consensus 209 -~~~~~~~~~~~~-----------~~~----------------~~~~~~v~~~~~sp~g~~l~t~s--~d~~i~vwd~~~ 258 (279)
.........+.+ ... ..+...+..+.|+|++..+++++ .|+.|++||+++
T Consensus 194 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~ 273 (318)
T 4ggc_A 194 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 273 (318)
T ss_dssp CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC
Confidence 000000011111 000 12456788999999999887654 799999999999
Q ss_pred CeEEEEEeCCCcceeEEEe
Q 023642 259 NKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 259 ~~~~~~~~~h~~~v~~v~~ 277 (279)
++++.++.+|.+.|+++..
T Consensus 274 ~~~~~~l~gH~~~V~~l~~ 292 (318)
T 4ggc_A 274 MAKVAELKGHTSRVLSLTM 292 (318)
T ss_dssp CCEEEEECCCSSCEEEEEE
T ss_pred CcEEEEEcCCCCCEEEEEE
Confidence 9999999999999999875
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-22 Score=174.90 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=118.9
Q ss_pred ceEeeeeecCCCCceee-CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCc-----ceEEEEEC
Q 023642 105 CHMLSRYLPVNGPWPVD-QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-----TVTDTSLS 178 (279)
Q Consensus 105 ~~~~~~~~~~~~~~~l~-~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~s 178 (279)
....|+++..+....+. +|.+.|.+++|||||.+||+++.||.|++||... .+.. +. |.. .|.+++||
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~---l~-~~~~~~~~sv~svafS 138 (588)
T 2j04_A 65 FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTN---LD-SKGNLSSRTYHCFEWN 138 (588)
T ss_dssp CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEE---CC-CSSCSTTTCEEEEEEC
T ss_pred CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeee---cc-CCCccccccEEEEEEc
Confidence 44556666655555554 6789999999999999999999999999999554 3322 23 443 49999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCcee-----eeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEE
Q 023642 179 PDQRHLVYASMSPIVHIVDVGSGTME-----SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV 253 (279)
Q Consensus 179 p~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~v 253 (279)
|||++|++|+.||+|+|||+.++... .+. .+..+. .+|..+|.+++|+||| +++++.|++|++
T Consensus 139 PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~---------ti~~~~-~gh~~~V~sVawSPdg--Laass~D~tVrl 206 (588)
T 2j04_A 139 PIESSIVVGNEDGELQFFSIRKNSENTPEFYFES---------SIRLSD-AGSKDWVTHIVWYEDV--LVAALSNNSVFS 206 (588)
T ss_dssp SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEE---------EEECSC-TTCCCCEEEEEEETTE--EEEEETTCCEEE
T ss_pred CCCCEEEEEcCCCEEEEEECCCCccccccceeee---------eeeccc-ccccccEEEEEEcCCc--EEEEeCCCeEEE
Confidence 99999999999999999999987530 111 121111 2367799999999999 788888999999
Q ss_pred EECCCCe---EEEEEe-CCCcceeEEEe
Q 023642 254 YDLEANK---LSLRIL-AHTVNIALWIT 277 (279)
Q Consensus 254 wd~~~~~---~~~~~~-~h~~~v~~v~~ 277 (279)
||+.+++ ..+++. +|...|.++..
T Consensus 207 Wd~~~~~~~~~~~tL~~~h~~~V~svaF 234 (588)
T 2j04_A 207 MTVSASSHQPVSRMIQNASRRKITDLKI 234 (588)
T ss_dssp ECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred EECCCCccccceeeecccccCcEEEEEE
Confidence 9998877 346774 88888888764
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-21 Score=163.02 Aligned_cols=180 Identities=13% Similarity=0.053 Sum_probs=136.1
Q ss_pred cCCCCee---eccccceEeeeeecCCCC--ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEee-eeecc
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVNGP--WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK-DILAK 166 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~~~--~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~ 166 (279)
+++++.+ .+.|+.+.+|++...... ..+..|...|.+++|+|++++|++++.|+.|++||+..+..... .....
T Consensus 60 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 139 (372)
T 1k8k_C 60 WAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK 139 (372)
T ss_dssp EETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT
T ss_pred EeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeec
Confidence 3444443 456888999998655422 23477999999999999999999999999999999987752111 12235
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeec-------cccccceeEEeeCCCCCccccEEEEEEecCC
Q 023642 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN-------VTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 239 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 239 (279)
.|...|.+++|+|++++|++++.|+.|++||++......... ......-..+. +|...|.+++|+|++
T Consensus 140 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~ 214 (372)
T 1k8k_C 140 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-----SSCGWVHGVCFSANG 214 (372)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-----CCSSCEEEEEECSSS
T ss_pred ccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-----CCCCeEEEEEECCCC
Confidence 788899999999999999999999999999975322100000 00000000111 266699999999999
Q ss_pred CEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 240 RELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 240 ~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
++|++++.|+.|++||+++++++..+.+|...|+++..
T Consensus 215 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 252 (372)
T 1k8k_C 215 SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF 252 (372)
T ss_dssp SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEE
Confidence 99999999999999999999999999999999988764
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-21 Score=164.73 Aligned_cols=183 Identities=16% Similarity=0.206 Sum_probs=138.2
Q ss_pred ccCCCCe-e---eccccceEeeee----ecCCC------CceeeC----------CCCCeEEEEECCCCCEEEEEeCCCc
Q 023642 92 NYSGRGR-F---SAADCCHMLSRY----LPVNG------PWPVDQ----------TTSRAYVSQFSADGSLFVAGFQASQ 147 (279)
Q Consensus 92 ~~~~~~~-~---~~~d~~~~~~~~----~~~~~------~~~l~~----------h~~~V~~~~~spd~~~l~s~~~d~~ 147 (279)
.+++++. + .+.|+.+.+|++ ..... ...+.. |.+.|++++|+|++++|++|+.|+.
T Consensus 52 ~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 131 (425)
T 1r5m_A 52 TWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGE 131 (425)
T ss_dssp EECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSC
T ss_pred EECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCe
Confidence 4566655 3 456788999998 44441 222333 6889999999999999999999999
Q ss_pred EEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccc---------------
Q 023642 148 IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEI--------------- 212 (279)
Q Consensus 148 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------------- 212 (279)
|++|| .++..+.. +..|...|.+++|+|++++|++++.|+.|++||+.+++..........
T Consensus 132 i~i~~-~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (425)
T 1r5m_A 132 LRLWN-KTGALLNV---LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS 207 (425)
T ss_dssp EEEEE-TTSCEEEE---ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CC
T ss_pred EEEEe-CCCCeeee---ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcc
Confidence 99999 44544443 467888999999999999999999999999999998876443322211
Q ss_pred -cceeEEeeCCC------------------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 213 -HDGLDFSAADD------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 213 -~~~~~~~~~~~------------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
...+.+.+.+. .+|...|.+++|+|++++|++++.|+.|++||+++++++..+.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 287 (425)
T 1r5m_A 208 LGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG 287 (425)
T ss_dssp CBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECC
T ss_pred eeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecC
Confidence 11111111110 34778999999999999999999999999999999999999999
Q ss_pred CCcceeEEEee
Q 023642 268 HTVNIALWITC 278 (279)
Q Consensus 268 h~~~v~~v~~~ 278 (279)
|...|.++..+
T Consensus 288 ~~~~i~~~~~~ 298 (425)
T 1r5m_A 288 HSQSIVSASWV 298 (425)
T ss_dssp CSSCEEEEEEE
T ss_pred CCccEEEEEEC
Confidence 99999888653
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.88 E-value=7.1e-21 Score=163.12 Aligned_cols=175 Identities=14% Similarity=0.113 Sum_probs=136.9
Q ss_pred eccccceEeeeeec------CCCCc-----ee-------eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEee
Q 023642 100 SAADCCHMLSRYLP------VNGPW-----PV-------DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK 161 (279)
Q Consensus 100 ~~~d~~~~~~~~~~------~~~~~-----~l-------~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~ 161 (279)
.+.++.+.+|++.. ..... .+ ..|...|.+++|+|++ +|++++.|+.|++||+.+++.+..
T Consensus 144 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~ 222 (397)
T 1sq9_A 144 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYN 222 (397)
T ss_dssp EETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEE
T ss_pred EeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEE
Confidence 35688899999987 55554 56 4589999999999999 999999999999999999877665
Q ss_pred eeeccCC---CcceEEEEECCCCCEEEEEeCC---CeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEE
Q 023642 162 DILAKSL---RWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF 235 (279)
Q Consensus 162 ~~~~~~~---~~~v~~~~~sp~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 235 (279)
.....+| ...|.+++|+|++++|++++.| +.|++||+++++............. .... ...|...|.+++|
T Consensus 223 ~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~v~~~~~ 299 (397)
T 1sq9_A 223 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ-ASLG--EFAHSSWVMSLSF 299 (397)
T ss_dssp EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---------C--CBSBSSCEEEEEE
T ss_pred EeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccc-cccc--ccccCCcEEEEEE
Confidence 3221227 8899999999999999999999 9999999998876433221000000 0000 0015568999999
Q ss_pred ecCCCEEEEecCCCeEEEEECCCCeEEEEEe------CC---------------CcceeEEEee
Q 023642 236 STDGRELVAGSSDDCIYVYDLEANKLSLRIL------AH---------------TVNIALWITC 278 (279)
Q Consensus 236 sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~------~h---------------~~~v~~v~~~ 278 (279)
+|++++|++++.|+.|++||+++++++..+. +| ...|+++...
T Consensus 300 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~ 363 (397)
T 1sq9_A 300 NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL 363 (397)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEec
Confidence 9999999999999999999999999999999 88 8999888653
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=7e-21 Score=160.98 Aligned_cols=176 Identities=16% Similarity=0.121 Sum_probs=141.9
Q ss_pred cCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR 169 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 169 (279)
+++++.+ .+.|+.+.+|++........+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+... .+.
T Consensus 40 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~ 115 (369)
T 3zwl_B 40 YNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW----KSP 115 (369)
T ss_dssp ECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE----ECS
T ss_pred EcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe----ecC
Confidence 5666654 456888999998777666778999999999999999999999999999999999999776653 267
Q ss_pred cceEEEEECCCCCEEEEEeCC-----CeEEEEECCCCceeeeeccccccceeEEeeCCCCCccc--cEEEEEEecCCCEE
Q 023642 170 WTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF--GIFSLKFSTDGREL 242 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l 242 (279)
..|.+++|+|++++|++++.+ +.|++||+...................+.. |.. .+.+++|+|++++|
T Consensus 116 ~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l 190 (369)
T 3zwl_B 116 VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT-----HEGLDAATVAGWSTKGKYI 190 (369)
T ss_dssp SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC-----CTTCCCEEEEEECGGGCEE
T ss_pred CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC-----CcCccceeEEEEcCCCCEE
Confidence 789999999999999999999 999999998765422111111111111111 233 89999999999999
Q ss_pred EEecCCCeEEEEECCC-CeEEEEEeCCCcceeEEEe
Q 023642 243 VAGSSDDCIYVYDLEA-NKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 243 ~t~s~d~~i~vwd~~~-~~~~~~~~~h~~~v~~v~~ 277 (279)
++++.|+.|++||+++ ++.+..+.+|...|.++..
T Consensus 191 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 226 (369)
T 3zwl_B 191 IAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQF 226 (369)
T ss_dssp EEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEE
T ss_pred EEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEE
Confidence 9999999999999998 8999999999999998865
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.7e-22 Score=177.03 Aligned_cols=162 Identities=6% Similarity=-0.017 Sum_probs=130.1
Q ss_pred eccccceEeeeeecCCC-----------CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC
Q 023642 100 SAADCCHMLSRYLPVNG-----------PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL 168 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~-----------~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (279)
.+.|+.+.+|++..... ...+.+|...|++++|+|++ .|++|+.||+|++||+.++.... ..+..|
T Consensus 231 ~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~--~~~~~H 307 (524)
T 2j04_B 231 VSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPS--FYDQVH 307 (524)
T ss_dssp EETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCS--EEEECS
T ss_pred EecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCce--EEeecc
Confidence 46788999999864321 13578899999999999864 89999999999999998764322 124689
Q ss_pred CcceEEE--EECCCC-CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe
Q 023642 169 RWTVTDT--SLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 169 ~~~v~~~--~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~ 245 (279)
...|.++ +|+|++ .+|++++.|++|+|||+++++.... +.++. ....|.+++|+|+++.|+++
T Consensus 308 ~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~-----------~~~~~---~~~~v~~v~fsp~~~~l~s~ 373 (524)
T 2j04_B 308 DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT-----------TVSRF---RGSNLVPVVYCPQIYSYIYS 373 (524)
T ss_dssp SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE-----------EEEEC---SCCSCCCEEEETTTTEEEEE
T ss_pred cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc-----------ccccc---ccCcccceEeCCCcCeEEEe
Confidence 9999999 578888 8999999999999999988664221 11111 00147889999999999999
Q ss_pred cCCCeEEEEECCCCeEEEEEeCCCcceeEEEee
Q 023642 246 SSDDCIYVYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 246 s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
+.|++|++||++++.++.++.+|...|++|..+
T Consensus 374 ~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~S 406 (524)
T 2j04_B 374 DGASSLRAVPSRAAFAVHPLVSRETTITAIGVS 406 (524)
T ss_dssp CSSSEEEEEETTCTTCCEEEEECSSCEEEEECC
T ss_pred CCCCcEEEEECcccccceeeecCCCceEEEEeC
Confidence 999999999999999989999999999998753
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.6e-21 Score=164.27 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=134.5
Q ss_pred eccccceEeeeeecCCCCceeeC-CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQ-TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
.+.++.+.+|+.........+.. |...|.+++|+|++++|++|+.|+.|++||+.+++.+.. +..|...|.+++|
T Consensus 109 ~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~- 184 (401)
T 4aez_A 109 VALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT---MAGHQARVGCLSW- 184 (401)
T ss_dssp EEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---ECCCSSCEEEEEE-
T ss_pred EECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE---ecCCCCceEEEEE-
Confidence 56788899999876655555544 899999999999999999999999999999999876654 4588899999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 179 p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
++.+|++++.|+.|++||++....... .+. +|...|.+++|+|++++|++++.|+.|++||+++
T Consensus 185 -~~~~l~~~~~dg~i~i~d~~~~~~~~~----------~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 248 (401)
T 4aez_A 185 -NRHVLSSGSRSGAIHHHDVRIANHQIG----------TLQ-----GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248 (401)
T ss_dssp -ETTEEEEEETTSEEEEEETTSSSCEEE----------EEE-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred -CCCEEEEEcCCCCEEEEecccCcceee----------EEc-----CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC
Confidence 567999999999999999985432111 111 2666999999999999999999999999999999
Q ss_pred CeEEEEEeCCCcceeEEEee
Q 023642 259 NKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 259 ~~~~~~~~~h~~~v~~v~~~ 278 (279)
++++..+.+|...|.++..+
T Consensus 249 ~~~~~~~~~~~~~v~~~~~~ 268 (401)
T 4aez_A 249 SIPKFTKTNHNAAVKAVAWC 268 (401)
T ss_dssp SSEEEEECCCSSCCCEEEEC
T ss_pred CCccEEecCCcceEEEEEEC
Confidence 99999999999999988754
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.5e-22 Score=172.47 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=118.2
Q ss_pred eeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC-CCCEEEEEeCCCeEEEE
Q 023642 119 PVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIV 196 (279)
Q Consensus 119 ~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~ 196 (279)
....|...|++++|+| ++++||+|+.||.|+|||+.++..... ..+.+|.+.|++++|+| ++.+|++++.|++|++|
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-ECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 4577899999999999 677999999999999999987754322 33568999999999998 68999999999999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
|++++........ . .+...+.+++|+|++++|++|+.|+.|++||++ ++.+.++.+|...|+++.
T Consensus 193 d~~~~~~~~~~~~------------~--~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~ 257 (435)
T 4e54_B 193 DFKGNILRVFASS------------D--TINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVA 257 (435)
T ss_dssp ETTSCEEEEEECC------------S--SCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEE
T ss_pred eccCCceeEEecc------------C--CCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeee
Confidence 9987654322211 0 133467899999999999999999999999996 567788999999999886
Q ss_pred e
Q 023642 277 T 277 (279)
Q Consensus 277 ~ 277 (279)
.
T Consensus 258 ~ 258 (435)
T 4e54_B 258 L 258 (435)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-21 Score=162.72 Aligned_cols=149 Identities=19% Similarity=0.186 Sum_probs=116.8
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.|..+.+|++........+.+|.+.|++++|+|++++|++|+.|+.|++||+.+.+.+... .+...|..+.|+|
T Consensus 191 ~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~ 266 (340)
T 4aow_A 191 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL----DGGDIINALCFSP 266 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE----ECSSCEEEEEECS
T ss_pred EcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee----cCCceEEeeecCC
Confidence 456778888888766666678899999999999999999999999999999999998776542 3345799999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
++.++ +++.|+.|++||++++........... .....+|...|++++|+|+|++|++|+.|+.|+|||+++|
T Consensus 267 ~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 267 NRYWL-CAATGPSIKIWDLEGKIIVDELKQEVI-------STSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp SSSEE-EEEETTEEEEEETTTTEEEEEECCC--------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred CCcee-eccCCCEEEEEECCCCeEEEeccccce-------eeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 87655 556789999999998776432221110 0011236779999999999999999999999999999988
Q ss_pred e
Q 023642 260 K 260 (279)
Q Consensus 260 ~ 260 (279)
+
T Consensus 339 t 339 (340)
T 4aow_A 339 T 339 (340)
T ss_dssp -
T ss_pred C
Confidence 5
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=164.87 Aligned_cols=178 Identities=14% Similarity=0.118 Sum_probs=138.4
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
.+.|+.+.+|++........+.+|...|.+++|+| ++.+|++++.|+.|++||+.+++..........|...|.+++|+
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 46788899998877666667889999999999999 99999999999999999999997766543336889999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeec-----------------------------cccccce------eEEeeCCC
Q 023642 179 PDQRHLVYASMSPIVHIVDVGSGTMESLAN-----------------------------VTEIHDG------LDFSAADD 223 (279)
Q Consensus 179 p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----------------------------~~~~~~~------~~~~~~~~ 223 (279)
|++++|++++.|+.|++||+++++...... ....... ..+.+..+
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d 250 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCE 250 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSS
T ss_pred CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecC
Confidence 999999999999999999998764321110 0000000 00001000
Q ss_pred -------------------------------CCccccEEEEEEecC--CCEEEEecCCCeEEEEECCCCe----EEEEEe
Q 023642 224 -------------------------------GGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANK----LSLRIL 266 (279)
Q Consensus 224 -------------------------------~~~~~~v~~~~~sp~--g~~l~t~s~d~~i~vwd~~~~~----~~~~~~ 266 (279)
.+|...|.+++|+|+ +++|++++.|+.|++||+.+++ ....+.
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 330 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT 330 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC
T ss_pred CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc
Confidence 225567888999999 9999999999999999999875 556888
Q ss_pred CC--CcceeEEEe
Q 023642 267 AH--TVNIALWIT 277 (279)
Q Consensus 267 ~h--~~~v~~v~~ 277 (279)
+| ...|+++..
T Consensus 331 ~~~~~~~v~~~~~ 343 (366)
T 3k26_A 331 HHKCGAAIRQTSF 343 (366)
T ss_dssp CTTCCSCEEEEEE
T ss_pred ccccCCceEEEEe
Confidence 88 788888865
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-21 Score=166.55 Aligned_cols=158 Identities=14% Similarity=0.171 Sum_probs=120.7
Q ss_pred ee-eCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCC---CeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeE
Q 023642 119 PV-DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (279)
Q Consensus 119 ~l-~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i 193 (279)
.+ .+|.+.|++++|+| ++++|++|+.|++|++||+.+ +....... ...|...|.+++|+|++.+|++++.|+.|
T Consensus 57 ~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~s~dg~i 135 (437)
T 3gre_A 57 TLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL-TYDCSSTVTQITMIPNFDAFAVSSKDGQI 135 (437)
T ss_dssp EECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE-EEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee-eccCCCCEEEEEEeCCCCEEEEEeCCCEE
Confidence 35 78999999999999 999999999999999999976 43221111 12588899999999999999999999999
Q ss_pred EEEECC---CCceeeeeccc--------c---------------ccceeEEeeCCC-----------------CC--ccc
Q 023642 194 HIVDVG---SGTMESLANVT--------E---------------IHDGLDFSAADD-----------------GG--YSF 228 (279)
Q Consensus 194 ~i~d~~---~~~~~~~~~~~--------~---------------~~~~~~~~~~~~-----------------~~--~~~ 228 (279)
++||+. .++........ . ......+.+..+ .+ |..
T Consensus 136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~ 215 (437)
T 3gre_A 136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG 215 (437)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence 999994 33332111100 0 000111111111 22 778
Q ss_pred cEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe-CCCcceeEEEe
Q 023642 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTVNIALWIT 277 (279)
Q Consensus 229 ~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~v~~ 277 (279)
.|.+++|+|++++|++++.|++|++||+++++++.++. +|...|+++..
T Consensus 216 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 265 (437)
T 3gre_A 216 AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEV 265 (437)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEe
Confidence 99999999999999999999999999999999999987 78888888754
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=162.82 Aligned_cols=169 Identities=13% Similarity=0.121 Sum_probs=133.2
Q ss_pred cCC-CCee---eccccceEeeeeecC-------CCCceeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEe
Q 023642 93 YSG-RGRF---SAADCCHMLSRYLPV-------NGPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQ 160 (279)
Q Consensus 93 ~~~-~~~~---~~~d~~~~~~~~~~~-------~~~~~l~~h~~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~~~~~ 160 (279)
+++ ++.+ .+.|+.+.+|++... .....+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++.+.
T Consensus 89 ~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 168 (402)
T 2aq5_A 89 WCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL 168 (402)
T ss_dssp ECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred eCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccE
Confidence 455 4443 456889999998776 3456689999999999999998 699999999999999999997665
Q ss_pred eeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccc-cEEEEEEecCC
Q 023642 161 KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF-GIFSLKFSTDG 239 (279)
Q Consensus 161 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g 239 (279)
.. ....|...|.+++|+|++++|++++.|+.|++||+++++...... .+ |.+ .+.++.|+|++
T Consensus 169 ~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------~~-----~~~~~~~~~~~~~~~ 232 (402)
T 2aq5_A 169 TL-GPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD----------RP-----HEGTRPVHAVFVSEG 232 (402)
T ss_dssp EE-CTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE----------CS-----SCSSSCCEEEECSTT
T ss_pred EE-ecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec----------cC-----CCCCcceEEEEcCCC
Confidence 42 115788899999999999999999999999999999987643221 01 333 38899999999
Q ss_pred CEEEEe---cCCCeEEEEECCCCeE-EEEEe-CCCcceeEEEe
Q 023642 240 RELVAG---SSDDCIYVYDLEANKL-SLRIL-AHTVNIALWIT 277 (279)
Q Consensus 240 ~~l~t~---s~d~~i~vwd~~~~~~-~~~~~-~h~~~v~~v~~ 277 (279)
++|++| +.|+.|++||+++++. +.... .|...|.++..
T Consensus 233 ~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 275 (402)
T 2aq5_A 233 KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF 275 (402)
T ss_dssp EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE
T ss_pred cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE
Confidence 999999 7899999999988653 33333 46666666543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-21 Score=160.86 Aligned_cols=141 Identities=11% Similarity=0.056 Sum_probs=110.1
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEE-eeeeeccCCCcceEEEEECC--CCCEEEEEeCCCeEE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVH 194 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~i~ 194 (279)
..+.+|.+.|++++|+|++++|++|+.|+.|++||+.++... .....+.+|...|.+++|+| ++++|++++.|+.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 457899999999999999999999999999999999876321 12223568999999999999 699999999999999
Q ss_pred EEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC--CCEEEEecCCCeEEEEECCCCeEEEEE
Q 023642 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKLSLRI 265 (279)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~t~s~d~~i~vwd~~~~~~~~~~ 265 (279)
+||+.++........ ......+. +|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+
T Consensus 85 vwd~~~~~~~~~~~~--~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 150 (351)
T 3f3f_A 85 LWEEDPDQEECSGRR--WNKLCTLN-----DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSW 150 (351)
T ss_dssp EEEECTTSCTTSSCS--EEEEEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCC
T ss_pred EEecCCCcccccccC--cceeeeec-----ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccc
Confidence 999988753110000 00000111 26669999999999 999999999999999999887654433
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-21 Score=161.74 Aligned_cols=146 Identities=16% Similarity=0.076 Sum_probs=120.8
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC--CCEEEEEeCCCeEE
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVH 194 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~ 194 (279)
...+.+|.+.|++++|+|++++|++|+.|+.|++||+..+... ....+..|...|++++|+|+ +++|++++.|+.|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK-LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce-eeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 3468899999999999999999999999999999999844221 22235689999999999987 99999999999999
Q ss_pred EEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC--CCEEEEecCCCeEEEEECCCC--eEEEEEeCCCc
Q 023642 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN--KLSLRILAHTV 270 (279)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~t~s~d~~i~vwd~~~~--~~~~~~~~h~~ 270 (279)
+||+.+++....... . +|...|.+++|+|+ +.+|++++.|+.|++||++++ .....+.+|..
T Consensus 83 iwd~~~~~~~~~~~~---------~-----~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 148 (379)
T 3jrp_A 83 IWKEENGRWSQIAVH---------A-----VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 148 (379)
T ss_dssp EEEEETTEEEEEEEE---------C-----CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT
T ss_pred EEEcCCCceeEeeee---------c-----CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC
Confidence 999998863222211 1 15569999999999 999999999999999999887 35567788999
Q ss_pred ceeEEEe
Q 023642 271 NIALWIT 277 (279)
Q Consensus 271 ~v~~v~~ 277 (279)
.|+++..
T Consensus 149 ~v~~~~~ 155 (379)
T 3jrp_A 149 GVNSASW 155 (379)
T ss_dssp CEEEEEE
T ss_pred ceEEEEE
Confidence 9988865
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.3e-21 Score=165.98 Aligned_cols=176 Identities=13% Similarity=0.133 Sum_probs=132.9
Q ss_pred ccCCCCee---eccccceEeeeeecCCC-----------CceeeCCC------------CCeEEEEECCCC--CEEEEEe
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNG-----------PWPVDQTT------------SRAYVSQFSADG--SLFVAGF 143 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~-----------~~~l~~h~------------~~V~~~~~spd~--~~l~s~~ 143 (279)
.+++++.+ ++.|+.+.+|++..... ...+.+|. +.|++++|+|++ .+|++++
T Consensus 35 ~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s 114 (447)
T 3dw8_B 35 EFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLST 114 (447)
T ss_dssp EECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeC
Confidence 35666654 45788999999876552 34578998 889999999998 8999999
Q ss_pred CCCcEEEEEcCCCeEEe-------------------------------------eeeeccCCCcceEEEEECCCCCEEEE
Q 023642 144 QASQIRIYDVERGWKIQ-------------------------------------KDILAKSLRWTVTDTSLSPDQRHLVY 186 (279)
Q Consensus 144 ~d~~i~iwd~~~~~~~~-------------------------------------~~~~~~~~~~~v~~~~~sp~~~~l~~ 186 (279)
.|+.|++||+.++.... ......+|...|.+++|+|++++|++
T Consensus 115 ~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 194 (447)
T 3dw8_B 115 NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLS 194 (447)
T ss_dssp CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEE
T ss_pred CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEE
Confidence 99999999997653311 00123578999999999999999999
Q ss_pred EeCCCeEEEEECCCCc-eeeeeccccccceeEEeeCCCCCccccEEEEEEecCC-CEEEEecCCCeEEEEECCCCeE---
Q 023642 187 ASMSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKL--- 261 (279)
Q Consensus 187 ~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~t~s~d~~i~vwd~~~~~~--- 261 (279)
+ .|+.|++||+.... ......... ..-.+|...|.+++|+|++ .+|++++.|+.|++||+++++.
T Consensus 195 ~-~d~~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 195 A-DDLRINLWHLEITDRSFNIVDIKP---------ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp E-CSSEEEEEETTEEEEEEEEEECCC---------SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred e-CCCeEEEEECCCCCceeeeeeccc---------ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 8 79999999998433 222111000 0011266799999999998 9999999999999999999887
Q ss_pred -EEEEeCCCc------------ceeEEEe
Q 023642 262 -SLRILAHTV------------NIALWIT 277 (279)
Q Consensus 262 -~~~~~~h~~------------~v~~v~~ 277 (279)
+..+.+|.. .|+++..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 293 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKF 293 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEE
T ss_pred eeeEeccCCCccccccccccCceEEEEEE
Confidence 788998886 7887764
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.87 E-value=9.9e-22 Score=169.22 Aligned_cols=173 Identities=10% Similarity=0.032 Sum_probs=115.3
Q ss_pred eccccceEeeeeecCCCC-----ceeeCCCCCeEEEEECC--------CCCEEEEEeCCCcEEEEEcCCCeEEeeeeecc
Q 023642 100 SAADCCHMLSRYLPVNGP-----WPVDQTTSRAYVSQFSA--------DGSLFVAGFQASQIRIYDVERGWKIQKDILAK 166 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~-----~~l~~h~~~V~~~~~sp--------d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 166 (279)
.+.|+++.+|+....... ..+.+|.+.|++++|+| |+++|++|+.|++|+|||+.++.+... ..
T Consensus 107 ~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~---~~ 183 (393)
T 4gq1_A 107 VCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA---GY 183 (393)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE---EE
T ss_pred EeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee---ec
Confidence 567899999998765322 23689999999999998 889999999999999999988766544 34
Q ss_pred CCCcceEEEEECCCCC-EEEEEeCCCeEEEEECCCCceeeeecc-ccccceeEEeeC--------CCCCccccEEEEEEe
Q 023642 167 SLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANV-TEIHDGLDFSAA--------DDGGYSFGIFSLKFS 236 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~~v~~~~~s 236 (279)
.|..+|.+++|+|++. +|++++.|++|++||+++++....... ........+... ...+|...+.++.|+
T Consensus 184 ~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~ 263 (393)
T 4gq1_A 184 PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI 263 (393)
T ss_dssp ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEE
T ss_pred CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeee
Confidence 6777899999999874 799999999999999998765322111 000000001100 113577789999997
Q ss_pred -cCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 237 -TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 237 -p~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
|+++.|++++.|+++++||+.+++....+..|...+..+
T Consensus 264 ~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~ 303 (393)
T 4gq1_A 264 GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPK 303 (393)
T ss_dssp TTTTCEEEEECTTSEEEEEEC-------------------
T ss_pred cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccE
Confidence 799999999999999999999998888888877665543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=163.96 Aligned_cols=165 Identities=13% Similarity=0.119 Sum_probs=133.2
Q ss_pred eccccceEeeeeec----------CCCCceeeCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeE----Eeeeee
Q 023642 100 SAADCCHMLSRYLP----------VNGPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWK----IQKDIL 164 (279)
Q Consensus 100 ~~~d~~~~~~~~~~----------~~~~~~l~~h~~~V~~~~~spd~~-~l~s~~~d~~i~iwd~~~~~~----~~~~~~ 164 (279)
.+.++.+.+|++.. ......+.+|...|++++|+|++. +|++|+.||.|++||+..+.. +.....
T Consensus 147 ~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 226 (430)
T 2xyi_A 147 KTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI 226 (430)
T ss_dssp ECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEE
T ss_pred ECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceecccee
Confidence 45678899999876 344556889999999999999988 999999999999999987422 222234
Q ss_pred ccCCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC-EE
Q 023642 165 AKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-EL 242 (279)
Q Consensus 165 ~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l 242 (279)
+..|...|.+++|+| ++.+|++++.|+.|++||++++....... .+.. |...|++++|+|+++ +|
T Consensus 227 ~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~--------~~~~-----~~~~v~~i~~~p~~~~~l 293 (430)
T 2xyi_A 227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSH--------TVDA-----HTAEVNCLSFNPYSEFIL 293 (430)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSE--------EEEC-----CSSCEEEEEECSSCTTEE
T ss_pred ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCccee--------Eeec-----CCCCeEEEEeCCCCCCEE
Confidence 568888999999999 67889999999999999999864111100 1111 556899999999987 68
Q ss_pred EEecCCCeEEEEECCC-CeEEEEEeCCCcceeEEEe
Q 023642 243 VAGSSDDCIYVYDLEA-NKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 243 ~t~s~d~~i~vwd~~~-~~~~~~~~~h~~~v~~v~~ 277 (279)
++|+.|+.|++||+++ +.++..+.+|...|.++..
T Consensus 294 ~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~ 329 (430)
T 2xyi_A 294 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 329 (430)
T ss_dssp EEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEE
T ss_pred EEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEE
Confidence 8999999999999998 6788999999999998865
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.87 E-value=8.6e-21 Score=157.52 Aligned_cols=159 Identities=10% Similarity=0.005 Sum_probs=115.9
Q ss_pred ccceEeeeeecC-CCCceeeCCCCCeEEEEECC---CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 103 DCCHMLSRYLPV-NGPWPVDQTTSRAYVSQFSA---DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 103 d~~~~~~~~~~~-~~~~~l~~h~~~V~~~~~sp---d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
++.+.+|.+.+. +....+.+|...++.++|+| ++.+|++|+.|++|+|||+.+++++..+.....+...+.+++|+
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafS 235 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYS 235 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEE
T ss_pred CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEEC
Confidence 778888887553 33344678888888888888 77899999999999999999998877643212223467888999
Q ss_pred CCCCEE------------EEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 179 PDQRHL------------VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 179 p~~~~l------------~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
|+|.++ ++|+.|+++++||..+++........ + ..+|...+.+..++ +.++++++
T Consensus 236 pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~-------~----p~Gh~~~~lsg~~s--g~~lASgS 302 (356)
T 2w18_A 236 EMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC-------L----PPGQAGRFLEGDVK--DHCAAAIL 302 (356)
T ss_dssp ETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC-------C----CTTCCCCEEEEEEE--TTEEEEEE
T ss_pred CCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee-------c----cCCCcceeEccccC--CCEEEEEc
Confidence 999886 56788999999999998865422110 1 11244445444444 88999999
Q ss_pred CCCeEEEEECCCCeEEEEEeCCCcceeE
Q 023642 247 SDDCIYVYDLEANKLSLRILAHTVNIAL 274 (279)
Q Consensus 247 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (279)
.|++|+|||+.++++++++.+|...+.+
T Consensus 303 ~DgTIkIWDl~tGk~l~tL~gH~~~vvs 330 (356)
T 2w18_A 303 TSGTIAIWDLLLGQCTALLPPVSDQHWS 330 (356)
T ss_dssp TTSCEEEEETTTCSEEEEECCC--CCCC
T ss_pred CCCcEEEEECCCCcEEEEecCCCCCeEE
Confidence 9999999999999999999999887654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-20 Score=160.50 Aligned_cols=143 Identities=13% Similarity=0.173 Sum_probs=121.5
Q ss_pred eeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC-CCCEEEEEeCCCeEEEE
Q 023642 119 PVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIV 196 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~ 196 (279)
.+.+|...|++++|+|++ ++|++|+.|+.|++||+.++..... ....+|...|.+++|+| ++++|++++.|+.|++|
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 146 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLR 146 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE
Confidence 468899999999999999 9999999999999999998765543 22347899999999999 78999999999999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
|+.+........ +. +|...|.+++|+|++++|++++.|+.|++||+ +++++..+.+|...|.++.
T Consensus 147 d~~~~~~~~~~~------------~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~ 211 (383)
T 3ei3_B 147 DFSGSVIQVFAK------------TD--SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAE 211 (383)
T ss_dssp ETTSCEEEEEEC------------CC--CSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEE
T ss_pred ECCCCceEEEec------------cC--CCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEE
Confidence 999644322211 11 14568999999999999999999999999999 5889999999999999886
Q ss_pred e
Q 023642 277 T 277 (279)
Q Consensus 277 ~ 277 (279)
.
T Consensus 212 ~ 212 (383)
T 3ei3_B 212 F 212 (383)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=169.41 Aligned_cols=165 Identities=10% Similarity=0.054 Sum_probs=129.5
Q ss_pred eccccceEeeeeecCCCCceeeC--CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQ--TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~--h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (279)
.+.|+.+.+|++........+.+ |.+.|++++|+|++++|++|+.|+.|++||+.+++++.... ..|..+|.+++|
T Consensus 188 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~ 265 (437)
T 3gre_A 188 LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS--FGDHAPITHVEV 265 (437)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB--CTTCEEEEEEEE
T ss_pred EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe--cCCCCceEEEEe
Confidence 46678899999877666667777 89999999999999999999999999999999987766421 266778999966
Q ss_pred C----CCCCEEEEEeCCCeEEEEECCCCceeeeeccc-cccceeEEeeCC-------CC--CccccEEEEEEecCCCEEE
Q 023642 178 S----PDQRHLVYASMSPIVHIVDVGSGTMESLANVT-EIHDGLDFSAAD-------DG--GYSFGIFSLKFSTDGRELV 243 (279)
Q Consensus 178 s----p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~--~~~~~v~~~~~sp~g~~l~ 243 (279)
+ |++.+|++++.|+.|++||+++++........ .......|.+.+ -. .|...|.+++|+ ++++|+
T Consensus 266 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~ 344 (437)
T 3gre_A 266 CQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILL 344 (437)
T ss_dssp CTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEE
T ss_pred ccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEE
Confidence 5 46789999999999999999988864333211 111111122221 01 277889999999 789999
Q ss_pred EecCCCeEEEEECCCCeEEEEEeC
Q 023642 244 AGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 244 t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
+++.|+.|++||+.+++++..+.+
T Consensus 345 s~~~d~~i~~wd~~~~~~~~~~~~ 368 (437)
T 3gre_A 345 TDEATSSIVMFSLNELSSSKAVIS 368 (437)
T ss_dssp EEGGGTEEEEEETTCGGGCEEEEC
T ss_pred ecCCCCeEEEEECCCcccceEEec
Confidence 999999999999999998888887
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=165.33 Aligned_cols=151 Identities=12% Similarity=0.153 Sum_probs=123.6
Q ss_pred eccccceEeeeeecCCCCceee-----CCCCCeEEEEECCC----CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCc
Q 023642 100 SAADCCHMLSRYLPVNGPWPVD-----QTTSRAYVSQFSAD----GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW 170 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~-----~h~~~V~~~~~spd----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 170 (279)
.+.++.+.+|++........+. .|...|++++|+|+ +++|++|+.|+.|++||+.+++.+.. +..|..
T Consensus 40 ~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~---~~~~~~ 116 (366)
T 3k26_A 40 TVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH---YVGHGN 116 (366)
T ss_dssp EEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE---EESCCS
T ss_pred ECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee---ecCCCC
Confidence 4556688999987665544443 26688999999998 67999999999999999999877654 457889
Q ss_pred ceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC
Q 023642 171 TVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (279)
Q Consensus 171 ~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~ 249 (279)
.|.+++|+| ++.+|++++.|+.|++||+++++........ .+|...|.+++|+|++++|++++.|+
T Consensus 117 ~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~dg 183 (366)
T 3k26_A 117 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-------------EGHRDEVLSADYDLLGEKIMSCGMDH 183 (366)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST-------------TSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc-------------ccccCceeEEEECCCCCEEEEecCCC
Confidence 999999999 9999999999999999999988764432110 12667999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEe
Q 023642 250 CIYVYDLEANKLSLRIL 266 (279)
Q Consensus 250 ~i~vwd~~~~~~~~~~~ 266 (279)
.|++||+++++.+..+.
T Consensus 184 ~i~i~d~~~~~~~~~~~ 200 (366)
T 3k26_A 184 SLKLWRINSKRMMNAIK 200 (366)
T ss_dssp CEEEEESCSHHHHHHHH
T ss_pred CEEEEECCCCccccccc
Confidence 99999999876554443
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.2e-21 Score=163.24 Aligned_cols=158 Identities=16% Similarity=0.139 Sum_probs=137.5
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.++.+.+|++........+.+|...|.+++|+|++++|++++.|+.|++||+.+++.... +..|...|.+++|+|
T Consensus 223 ~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~i~~~~~~~ 299 (425)
T 1r5m_A 223 PGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC---FYGHSQSIVSASWVG 299 (425)
T ss_dssp ECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEE---ECCCSSCEEEEEEET
T ss_pred EcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceE---ecCCCccEEEEEECC
Confidence 45677888998877766777889999999999999999999999999999999998765544 357888999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
++ ++++++.|+.|++||+.+++...... . |...|.+++|+|++++|++++.|+.|++||+.++
T Consensus 300 ~~-~l~~~~~d~~i~i~d~~~~~~~~~~~-----------~-----~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 300 DD-KVISCSMDGSVRLWSLKQNTLLALSI-----------V-----DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp TT-EEEEEETTSEEEEEETTTTEEEEEEE-----------C-----TTCCEEEEEECTTSSEEEEEETTSCEEEEECHHH
T ss_pred CC-EEEEEeCCCcEEEEECCCCcEeEecc-----------c-----CCccEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 99 99999999999999999887644322 1 4558999999999999999999999999999988
Q ss_pred e--------------------EEEEEeCCCc--ceeEEEe
Q 023642 260 K--------------------LSLRILAHTV--NIALWIT 277 (279)
Q Consensus 260 ~--------------------~~~~~~~h~~--~v~~v~~ 277 (279)
+ ++..+.+|.. .|+++..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 402 (425)
T 1r5m_A 363 NSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSW 402 (425)
T ss_dssp HC--------------CEECCEEEEECCTTCCCCEEEEEE
T ss_pred ccceeeeecccccccCcccchhhhhhcCcccCCceEEEEc
Confidence 8 8999999976 8888865
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-20 Score=157.33 Aligned_cols=178 Identities=8% Similarity=0.066 Sum_probs=138.8
Q ss_pred eccccceEeeeeecCC-CCceeeCCCCCeEEEE------ECCCCCEEEEEeCCCcEEEEEcCCCe-EEeeeeeccCC-Cc
Q 023642 100 SAADCCHMLSRYLPVN-GPWPVDQTTSRAYVSQ------FSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSL-RW 170 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~-~~~~l~~h~~~V~~~~------~spd~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~-~~ 170 (279)
.+.++.+.+|++.... ....+.+|...|.+++ |+|++++|++++.|+.|++||+.++. .........++ ..
T Consensus 86 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 86 GDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR 165 (357)
T ss_dssp EETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred ecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence 4568899999988766 5667899999999995 57899999999999999999999875 33332111221 33
Q ss_pred ceEEEE----ECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEee---CCC--------------------
Q 023642 171 TVTDTS----LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA---ADD-------------------- 223 (279)
Q Consensus 171 ~v~~~~----~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------- 223 (279)
.+.+++ |+|++++|++++.|+.|++||+++++.............+.|.+ .+.
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence 788888 78999999999999999999999988754443333333444444 222
Q ss_pred -----C-----CccccEEEEEEecCCC-EEEEecCCCeEEEEECCCC-------------------eEEEEEeCCCccee
Q 023642 224 -----G-----GYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEAN-------------------KLSLRILAHTVNIA 273 (279)
Q Consensus 224 -----~-----~~~~~v~~~~~sp~g~-~l~t~s~d~~i~vwd~~~~-------------------~~~~~~~~h~~~v~ 273 (279)
. +|...|.+++|+|+++ +|++++.|+.|++||++++ +++..+.+|...|+
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~ 325 (357)
T 3i2n_A 246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS 325 (357)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE
T ss_pred cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCee
Confidence 1 7889999999999998 8999999999999999753 57889999999999
Q ss_pred EEEe
Q 023642 274 LWIT 277 (279)
Q Consensus 274 ~v~~ 277 (279)
++..
T Consensus 326 ~~~~ 329 (357)
T 3i2n_A 326 SLDW 329 (357)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8865
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.5e-21 Score=160.10 Aligned_cols=139 Identities=18% Similarity=0.227 Sum_probs=119.0
Q ss_pred ecCCCCceeeCCCCCeEEEEECCC---CCEEEEEeCCCcEEEEEcCC-CeEEeeeeeccCCCcceEEEEECCCCCEEEEE
Q 023642 112 LPVNGPWPVDQTTSRAYVSQFSAD---GSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (279)
Q Consensus 112 ~~~~~~~~l~~h~~~V~~~~~spd---~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 187 (279)
.+......+.+|.+.|++++|+|+ |++|++|+.|+.|++||+.+ +..+.. .+..|...|.+++|+|++++|+++
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK--AQQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE--EEEECSSCEEEEEECTTSSEEEEE
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE--EeccccCCEEEEEECcCCCEEEEE
Confidence 344444567899999999999999 69999999999999999997 544422 246788999999999999999999
Q ss_pred eCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEE--ecCCCEEEEecCCCeEEEEECCCCeEEEEE
Q 023642 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF--STDGRELVAGSSDDCIYVYDLEANKLSLRI 265 (279)
Q Consensus 188 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~ 265 (279)
+.|+.|++||+.+++...... |...|.+++| +|++.+|++++.|+.|++||+++++++..+
T Consensus 105 ~~dg~v~iwd~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 167 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAIQIAQ-----------------HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL 167 (368)
T ss_dssp ETTSEEEEEETTTTEEEEEEE-----------------CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE
T ss_pred cCCCcEEEEEcCCCCceeecc-----------------ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE
Confidence 999999999999887643221 5568999999 899999999999999999999999999998
Q ss_pred eCCC
Q 023642 266 LAHT 269 (279)
Q Consensus 266 ~~h~ 269 (279)
..|.
T Consensus 168 ~~~~ 171 (368)
T 3mmy_A 168 QLPE 171 (368)
T ss_dssp ECSS
T ss_pred ecCC
Confidence 8765
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=162.54 Aligned_cols=161 Identities=12% Similarity=0.154 Sum_probs=131.6
Q ss_pred ccccceEeeeeecCCC--CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC---C-eEEeeeeeccCCCcceEE
Q 023642 101 AADCCHMLSRYLPVNG--PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER---G-WKIQKDILAKSLRWTVTD 174 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~--~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~---~-~~~~~~~~~~~~~~~v~~ 174 (279)
+.|+.+.+|++..... ......|...|.+++|+|++++|++|+.|+.|++||+.. + .... .+..|...|.+
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~---~~~~h~~~v~~ 118 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMA---RFSNHSSSVKT 118 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEE---ECCCSSSCCCE
T ss_pred CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchh---hccCCccceEE
Confidence 4677899999876542 333457899999999999999999999999999999987 2 2333 35689999999
Q ss_pred EEECCC-CCEEEEEeCCCeEEEEECCCCc------eeeeeccccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEec
Q 023642 175 TSLSPD-QRHLVYASMSPIVHIVDVGSGT------MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGS 246 (279)
Q Consensus 175 ~~~sp~-~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s 246 (279)
++|+|+ +++|++++.|+.|++||+.+++ ...... ...+|...|.+++|+|+ +.+|++++
T Consensus 119 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~~~~~~~~l~~~~ 185 (416)
T 2pm9_A 119 VKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG-------------QSMSSVDEVISLAWNQSLAHVFASAG 185 (416)
T ss_dssp EEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC-------------CSCCSSCCCCEEEECSSCTTEEEEES
T ss_pred EEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc-------------cccCCCCCeeEEEeCCCCCcEEEEEc
Confidence 999998 8999999999999999999876 211110 01136679999999999 78999999
Q ss_pred CCCeEEEEECCCCeEEEEEeCC------CcceeEEEe
Q 023642 247 SDDCIYVYDLEANKLSLRILAH------TVNIALWIT 277 (279)
Q Consensus 247 ~d~~i~vwd~~~~~~~~~~~~h------~~~v~~v~~ 277 (279)
.|+.|++||+++++++..+..| ...|+++..
T Consensus 186 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (416)
T 2pm9_A 186 SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW 222 (416)
T ss_dssp SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEE
T ss_pred CCCCEEEEECCCCCcceEEeccccccccCCceEEEEE
Confidence 9999999999999999999877 677887764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=175.91 Aligned_cols=142 Identities=11% Similarity=0.115 Sum_probs=126.5
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~ 196 (279)
...+.+|.+.|.+++|+|++++|++|+.||.|++||+.++..+.. +..|..+|.+++|+|++++|++++.|+.|++|
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS---IQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE---EECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE---EecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 356889999999999999999999999999999999999877665 45788899999999999999999999999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC-eEEEEEeCCCcceeEE
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTVNIALW 275 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~-~~~~~~~~h~~~v~~v 275 (279)
|+.+++...... +|...|.+++|+|++++|++++.|+.|++||+.++ .....+.+|...|.++
T Consensus 83 ~~~~~~~~~~~~----------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~ 146 (814)
T 3mkq_A 83 NYNTGEKVVDFE----------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146 (814)
T ss_dssp ETTTCCEEEEEE----------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEE
T ss_pred ECCCCcEEEEEe----------------cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEE
Confidence 999887643221 15669999999999999999999999999999987 7888999999999988
Q ss_pred Ee
Q 023642 276 IT 277 (279)
Q Consensus 276 ~~ 277 (279)
..
T Consensus 147 ~~ 148 (814)
T 3mkq_A 147 AF 148 (814)
T ss_dssp EE
T ss_pred EE
Confidence 75
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-20 Score=163.43 Aligned_cols=161 Identities=11% Similarity=0.012 Sum_probs=131.4
Q ss_pred ccCCCCee----eccccceEeeeee--cCCCCceee--CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEe-ee
Q 023642 92 NYSGRGRF----SAADCCHMLSRYL--PVNGPWPVD--QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ-KD 162 (279)
Q Consensus 92 ~~~~~~~~----~~~d~~~~~~~~~--~~~~~~~l~--~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~-~~ 162 (279)
.+++++.+ .+.|+.+.+|++. .......+. .|...|++++|+|++++|++|+.|+.|++|++.++.... ..
T Consensus 109 ~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~ 188 (450)
T 2vdu_B 109 RLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQ 188 (450)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCC
T ss_pred EEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccc
Confidence 45666654 3468899999997 444444454 678999999999999999999999999999998875432 11
Q ss_pred eeccCCCcceEEEEECCC---CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCC
Q 023642 163 ILAKSLRWTVTDTSLSPD---QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 239 (279)
Q Consensus 163 ~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 239 (279)
..+.+|...|.+++|+|+ +++|++++.|+.|++||+.++....... .+|...|.+++|+ ++
T Consensus 189 ~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~---------------~~h~~~v~~~~~s-d~ 252 (450)
T 2vdu_B 189 EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL---------------FGHKHFVSSICCG-KD 252 (450)
T ss_dssp CCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC---------------CCCSSCEEEEEEC-ST
T ss_pred eeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee---------------cCCCCceEEEEEC-CC
Confidence 234678889999999999 9999999999999999999877543211 1266799999999 99
Q ss_pred CEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 240 RELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 240 ~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
++|++++.|++|++||+.+++++..+..+
T Consensus 253 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~ 281 (450)
T 2vdu_B 253 YLLLSAGGDDKIFAWDWKTGKNLSTFDYN 281 (450)
T ss_dssp TEEEEEESSSEEEEEETTTCCEEEEEECH
T ss_pred CEEEEEeCCCeEEEEECCCCcEeeeecch
Confidence 99999999999999999999999998743
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-20 Score=175.31 Aligned_cols=182 Identities=13% Similarity=0.170 Sum_probs=145.0
Q ss_pred cCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR 169 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 169 (279)
+++++.+ .+.++.+.+|++........+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+.. +..|.
T Consensus 21 ~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~---~~~~~ 97 (814)
T 3mkq_A 21 FHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD---FEAHP 97 (814)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE---EECCS
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE---EecCC
Confidence 4555543 45678899998876666667889999999999999999999999999999999999877654 45788
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEECCCCce-eeee-ccccccceeEEee-CC--------C---------------
Q 023642 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM-ESLA-NVTEIHDGLDFSA-AD--------D--------------- 223 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~-~~~~-~~~~~~~~~~~~~-~~--------~--------------- 223 (279)
..|++++|+|++++|++++.|+.|++||+.++.. .... ........+.|.+ ++ +
T Consensus 98 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~ 177 (814)
T 3mkq_A 98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSE
T ss_pred CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence 8999999999999999999999999999987632 2111 1111111222322 11 1
Q ss_pred ---CCccccEEEEEEec--CCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 224 ---GGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 224 ---~~~~~~v~~~~~sp--~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
..+...+.+++|+| ++++|++++.|+.|++||+.+++++..+.+|...|.++..
T Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 236 (814)
T 3mkq_A 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236 (814)
T ss_dssp EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 23447899999999 9999999999999999999999999999999999988765
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=174.65 Aligned_cols=171 Identities=13% Similarity=0.141 Sum_probs=138.7
Q ss_pred cCCCCee---eccccceEeeeeec--CCCCceeeCCCCCeEEEEECCC--CCEEEEEeCCCcEEEEEcCCCeEEeeeeec
Q 023642 93 YSGRGRF---SAADCCHMLSRYLP--VNGPWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILA 165 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~--~~~~~~l~~h~~~V~~~~~spd--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 165 (279)
+++++.+ ++.|+.+.+|++.. ......+.+|.+.|++++|+|+ +++|++|+.||.|++||+.++.... ....
T Consensus 17 ~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~-~~~~ 95 (753)
T 3jro_A 17 LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ-IAVH 95 (753)
T ss_dssp CCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEE-EEEE
T ss_pred ECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccc-cccc
Confidence 4444443 45688999999873 3334557899999999999998 9999999999999999999885222 2235
Q ss_pred cCCCcceEEEEECCC--CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec------
Q 023642 166 KSLRWTVTDTSLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST------ 237 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp------ 237 (279)
..|...|.+++|+|+ +.++++++.|+.|++||++++....... +. +|...|.+++|+|
T Consensus 96 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~---------~~-----~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 96 AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---------ID-----AHAIGVNSASWAPATIEED 161 (753)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE---------EE-----CCSSCEEEEEECCCC----
T ss_pred cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE---------ee-----cCCCceEEEEecCcccccc
Confidence 678899999999999 9999999999999999999874422211 11 2566999999999
Q ss_pred -------CCCEEEEecCCCeEEEEECCCC----eEEEEEeCCCcceeEEEee
Q 023642 238 -------DGRELVAGSSDDCIYVYDLEAN----KLSLRILAHTVNIALWITC 278 (279)
Q Consensus 238 -------~g~~l~t~s~d~~i~vwd~~~~----~~~~~~~~h~~~v~~v~~~ 278 (279)
++.+|++|+.|+.|++||++++ .++..+.+|...|+++..+
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s 213 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEec
Confidence 5899999999999999999876 6778899999999988753
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=166.53 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=118.1
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 198 (279)
....+.++|++++|+|++++|++|+.|+.|++||+.++... ....+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWK-HARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEE-ECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceE-EEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 34557789999999999999999999999999999987311 12235689999999999999999999999999999999
Q ss_pred CCCc----eeeeeccccccceeEEeeCCC----------------------------CC-ccccEEEEEEecCCCEEEEe
Q 023642 199 GSGT----MESLANVTEIHDGLDFSAADD----------------------------GG-YSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 199 ~~~~----~~~~~~~~~~~~~~~~~~~~~----------------------------~~-~~~~v~~~~~sp~g~~l~t~ 245 (279)
.++. .............+.|.+++. .+ |...|.+++|+|++++|+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 9876 222212222222222322221 22 88899999999999999999
Q ss_pred cCCCeEEEEECC------------------CCeEEEEEeCCCcceeEEEe
Q 023642 246 SSDDCIYVYDLE------------------ANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 246 s~d~~i~vwd~~------------------~~~~~~~~~~h~~~v~~v~~ 277 (279)
+.|++|++||+. .++++..+ +|...|+++..
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~ 213 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGF 213 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEE
Confidence 999999999984 46677788 89999998865
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-21 Score=161.83 Aligned_cols=150 Identities=14% Similarity=0.053 Sum_probs=117.3
Q ss_pred eccccceEeeeee------cCCCCce----eeCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC
Q 023642 100 SAADCCHMLSRYL------PVNGPWP----VDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKS 167 (279)
Q Consensus 100 ~~~d~~~~~~~~~------~~~~~~~----l~~h~~~V~~~~~sp--d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 167 (279)
.+.|+.+.+|+.. ....... ..+|.+.|.+++|+| ++++|++++.|++|++||+.+++.... ....
T Consensus 91 ~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~--~~~~ 168 (343)
T 3lrv_A 91 RGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIV--HSAK 168 (343)
T ss_dssp ECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEE--ECCC
T ss_pred ecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE--EecC
Confidence 5678888888543 2222222 236778999999999 999999999999999999999877443 1234
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee-eeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 168 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
+...|.+++|+|++.+|++|+.|+.|++||+++++.. .. +.. +|...|.+++|+|+|.+|++++
T Consensus 169 ~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~-----------~~~----~h~~~v~~l~fs~~g~~l~s~~ 233 (343)
T 3lrv_A 169 SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSR-----------FPV----DEEAKIKEVKFADNGYWMVVEC 233 (343)
T ss_dssp SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEE-----------CCC----CTTSCEEEEEECTTSSEEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccE-----------Eec----cCCCCEEEEEEeCCCCEEEEEe
Confidence 5667999999999999999999999999999998754 11 111 1667999999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEeC
Q 023642 247 SDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 247 ~d~~i~vwd~~~~~~~~~~~~ 267 (279)
|+.|++||+++++++..+..
T Consensus 234 -~~~v~iwd~~~~~~~~~~~~ 253 (343)
T 3lrv_A 234 -DQTVVCFDLRKDVGTLAYPT 253 (343)
T ss_dssp -SSBEEEEETTSSTTCBSSCC
T ss_pred -CCeEEEEEcCCCCcceeecc
Confidence 45999999998876655443
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.6e-21 Score=170.08 Aligned_cols=161 Identities=9% Similarity=0.027 Sum_probs=123.4
Q ss_pred ccccceEeeeeecCCCC----ceeeCCCCCeEEEEECCC------CCEEEEEeCCCcEEEEEcCCCeEE--------eee
Q 023642 101 AADCCHMLSRYLPVNGP----WPVDQTTSRAYVSQFSAD------GSLFVAGFQASQIRIYDVERGWKI--------QKD 162 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~----~~l~~h~~~V~~~~~spd------~~~l~s~~~d~~i~iwd~~~~~~~--------~~~ 162 (279)
+.|+.+.+|++...... ..+.+|.+.|.+++|+|+ +.+||+++.|++|++||+..+... ...
T Consensus 180 s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~ 259 (524)
T 2j04_B 180 KHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPS 259 (524)
T ss_dssp --CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCS
T ss_pred CCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCce
Confidence 46778899998665432 236778899999999997 579999999999999999876321 011
Q ss_pred eeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEE--EEecCC-
Q 023642 163 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSL--KFSTDG- 239 (279)
Q Consensus 163 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~g- 239 (279)
..+.+|...|++++|+|++ .|++|+.||+|++||++++..... .+. +|...|.++ +|+|++
T Consensus 260 ~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~----------~~~-----~H~~~V~sv~~~~s~~g~ 323 (524)
T 2j04_B 260 LTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSF----------YDQ-----VHDSYILSVSTAYSDFED 323 (524)
T ss_dssp EEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSE----------EEE-----CSSSCEEEEEEECCTTSC
T ss_pred EEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceE----------Eee-----cccccEEEEEEEcCCCCC
Confidence 2356788999999999864 899999999999999987642110 111 266799999 578888
Q ss_pred CEEEEecCCCeEEEEECCCCeEEEEEeCCCc--ceeEEEe
Q 023642 240 RELVAGSSDDCIYVYDLEANKLSLRILAHTV--NIALWIT 277 (279)
Q Consensus 240 ~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~--~v~~v~~ 277 (279)
.+|+|++.|++|+|||+++++++.++.+|.. .|+++..
T Consensus 324 ~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f 363 (524)
T 2j04_B 324 TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY 363 (524)
T ss_dssp CEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEE
T ss_pred eEEEEeccCCeEEEEECCCCCcccccccccccCcccceEe
Confidence 8999999999999999999888777777764 3555543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=157.68 Aligned_cols=178 Identities=13% Similarity=0.170 Sum_probs=133.0
Q ss_pred eccccceEeeeeecCCCCcee--eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee--------------
Q 023642 100 SAADCCHMLSRYLPVNGPWPV--DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI-------------- 163 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l--~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------- 163 (279)
.+.|+++.+|+.........+ .+|...|++++|+|+|++|++|+.|+.|++||+.+++.+....
T Consensus 121 vgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~ 200 (420)
T 4gga_A 121 VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY 200 (420)
T ss_dssp EEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred EEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCC
Confidence 456889999998766544444 5788899999999999999999999999999999876543321
Q ss_pred ------------------------eccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceee-----eeccccccc
Q 023642 164 ------------------------LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES-----LANVTEIHD 214 (279)
Q Consensus 164 ------------------------~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~-----~~~~~~~~~ 214 (279)
.+.+|...+..+.|+|+++++++++.|+.+++||..+++... .........
T Consensus 201 ~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~ 280 (420)
T 4gga_A 201 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 280 (420)
T ss_dssp EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEE
T ss_pred EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCcee
Confidence 123567778899999999999999999999999998765311 111111111
Q ss_pred eeEEeeCC-----------C----------------CCccccEEEEEEecCCCEEEEec--CCCeEEEEECCCCeEEEEE
Q 023642 215 GLDFSAAD-----------D----------------GGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRI 265 (279)
Q Consensus 215 ~~~~~~~~-----------~----------------~~~~~~v~~~~~sp~g~~l~t~s--~d~~i~vwd~~~~~~~~~~ 265 (279)
.+.|.+.. + ..+...+.++.|+|+++.+++++ .|+.|+|||+.+++++.++
T Consensus 281 ~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l 360 (420)
T 4gga_A 281 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL 360 (420)
T ss_dssp EEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE
T ss_pred eeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE
Confidence 11111111 1 01235688999999999888754 7899999999999999999
Q ss_pred eCCCcceeEEEe
Q 023642 266 LAHTVNIALWIT 277 (279)
Q Consensus 266 ~~h~~~v~~v~~ 277 (279)
.+|...|+++..
T Consensus 361 ~gH~~~V~~l~~ 372 (420)
T 4gga_A 361 KGHTSRVLSLTM 372 (420)
T ss_dssp CCCSSCEEEEEE
T ss_pred cCCCCCEEEEEE
Confidence 999999999875
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-20 Score=158.34 Aligned_cols=156 Identities=15% Similarity=0.168 Sum_probs=124.4
Q ss_pred cccceEeeeeec-CCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC
Q 023642 102 ADCCHMLSRYLP-VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (279)
Q Consensus 102 ~d~~~~~~~~~~-~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 180 (279)
.++.+.+|++.. ......+.+|...|.+++|+|++++|++|+.|+.|++||+.++..... +..|...|.+++|+|+
T Consensus 194 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~---~~~~~~~v~~~~~~p~ 270 (401)
T 4aez_A 194 RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT---KTNHNAAVKAVAWCPW 270 (401)
T ss_dssp TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE---ECCCSSCCCEEEECTT
T ss_pred CCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE---ecCCcceEEEEEECCC
Confidence 445555665542 222345789999999999999999999999999999999998876654 4578889999999997
Q ss_pred CC-EEEEEe--CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEE--ecCCCeEEEEE
Q 023642 181 QR-HLVYAS--MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA--GSSDDCIYVYD 255 (279)
Q Consensus 181 ~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t--~s~d~~i~vwd 255 (279)
+. ++++++ .|+.|++||+.+++...... +...|.+++|+|+++++++ |+.|+.|++||
T Consensus 271 ~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-----------------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~ 333 (401)
T 4aez_A 271 QSNLLATGGGTMDKQIHFWNAATGARVNTVD-----------------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWS 333 (401)
T ss_dssp STTEEEEECCTTTCEEEEEETTTCCEEEEEE-----------------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEE
T ss_pred CCCEEEEecCCCCCEEEEEECCCCCEEEEEe-----------------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEe
Confidence 75 455554 69999999999887644322 2347999999999999998 55899999999
Q ss_pred CCCCeEEE--EEeCCCcceeEEEe
Q 023642 256 LEANKLSL--RILAHTVNIALWIT 277 (279)
Q Consensus 256 ~~~~~~~~--~~~~h~~~v~~v~~ 277 (279)
+.+++... .+.+|...|.++..
T Consensus 334 ~~~~~~~~~~~~~~h~~~v~~~~~ 357 (401)
T 4aez_A 334 YSSSGLTKQVDIPAHDTRVLYSAL 357 (401)
T ss_dssp EETTEEEEEEEEECCSSCCCEEEE
T ss_pred cCCccceeEEEecCCCCCEEEEEE
Confidence 99966554 46799999988765
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.7e-20 Score=160.82 Aligned_cols=182 Identities=11% Similarity=0.043 Sum_probs=138.0
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCc----eeeCCCCCeEEEEECCC---CCEEEEEeCCCcEEEEEcCCCeEEee
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPW----PVDQTTSRAYVSQFSAD---GSLFVAGFQASQIRIYDVERGWKIQK 161 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~----~l~~h~~~V~~~~~spd---~~~l~s~~~d~~i~iwd~~~~~~~~~ 161 (279)
.+++++.+ .+.++.+.+|+++...... .+.+|...|++++|+|+ +++|++|+.|+.|++||+.++..+..
T Consensus 156 ~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 156 SIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK 235 (450)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE
T ss_pred EEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee
Confidence 35666654 3456778888877655443 67899999999999999 99999999999999999998876554
Q ss_pred eeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecccccccee---------EEeeCCCCCccccEEE
Q 023642 162 DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---------DFSAADDGGYSFGIFS 232 (279)
Q Consensus 162 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~v~~ 232 (279)
. ..+|...|.+++|+ ++++|++++.|+.|++||+.+++.............+ .|...........|.+
T Consensus 236 ~--~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 236 W--LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp E--CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred e--ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 2 45788999999999 9999999999999999999998865443321110000 1111111123457999
Q ss_pred EEEecCCCEEEEec-CCCeEEEEEC--CCC---eEEEEEeCCCcceeEEEe
Q 023642 233 LKFSTDGRELVAGS-SDDCIYVYDL--EAN---KLSLRILAHTVNIALWIT 277 (279)
Q Consensus 233 ~~~sp~g~~l~t~s-~d~~i~vwd~--~~~---~~~~~~~~h~~~v~~v~~ 277 (279)
++|+|++++|++++ .|+.|++|++ .++ +.+..+.+| ..|.++..
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~ 362 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSA 362 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEe
Confidence 99999999999988 8999999999 666 788899988 77777654
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.6e-20 Score=166.03 Aligned_cols=168 Identities=13% Similarity=0.013 Sum_probs=125.5
Q ss_pred CccCCCCee--eccccceEeeeeecC----CCCceeeCCCCC-eEEEEECC--CCCEEEEEeCCCcEEEEEcCCC-----
Q 023642 91 GNYSGRGRF--SAADCCHMLSRYLPV----NGPWPVDQTTSR-AYVSQFSA--DGSLFVAGFQASQIRIYDVERG----- 156 (279)
Q Consensus 91 ~~~~~~~~~--~~~d~~~~~~~~~~~----~~~~~l~~h~~~-V~~~~~sp--d~~~l~s~~~d~~i~iwd~~~~----- 156 (279)
..+++++.+ .+.++.+.+|++... .....+.+|... |++++|+| ++++|++|+.|+.|++||+.++
T Consensus 24 ~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 103 (615)
T 1pgu_A 24 LSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS 103 (615)
T ss_dssp CEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE
T ss_pred EEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccc
Confidence 345666653 345778999998866 566678999999 99999999 9999999999999999999754
Q ss_pred ---eEEeeeeeccCCCcceEEEEECCCCCEEEEEe---------------------------------------------
Q 023642 157 ---WKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS--------------------------------------------- 188 (279)
Q Consensus 157 ---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--------------------------------------------- 188 (279)
.... .+..|...|.+++|+|++++|++++
T Consensus 104 ~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 180 (615)
T 1pgu_A 104 VEVNVKS---EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG 180 (615)
T ss_dssp EEEEEEE---EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEE
T ss_pred ccccccc---hhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEe
Confidence 2222 2334555566666666655555554
Q ss_pred CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccc---cEEEEEEecC-CCEEEEecCCCeEEEEECCCCeEEEE
Q 023642 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF---GIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLR 264 (279)
Q Consensus 189 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~-g~~l~t~s~d~~i~vwd~~~~~~~~~ 264 (279)
.|+.|++||+.+++..... .+|.. .|.+++|+|+ +++|++++.|+.|++||+.+++.+..
T Consensus 181 ~d~~v~vwd~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 244 (615)
T 1pgu_A 181 DDGSVVFYQGPPFKFSASD----------------RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 244 (615)
T ss_dssp TTTEEEEEETTTBEEEEEE----------------CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred CCCcEEEEeCCCcceeeee----------------cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEE
Confidence 4445555554443332111 23666 8999999999 99999999999999999999999999
Q ss_pred E-e---CCCcceeEEEe
Q 023642 265 I-L---AHTVNIALWIT 277 (279)
Q Consensus 265 ~-~---~h~~~v~~v~~ 277 (279)
+ . +|...|.++..
T Consensus 245 ~~~~~~~~~~~v~~~~~ 261 (615)
T 1pgu_A 245 IEDDQEPVQGGIFALSW 261 (615)
T ss_dssp CCBTTBCCCSCEEEEEE
T ss_pred ecccccccCCceEEEEE
Confidence 9 6 89999988765
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.9e-20 Score=178.07 Aligned_cols=141 Identities=21% Similarity=0.230 Sum_probs=126.0
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
..+.+|.+.|++++|+|++++|++|+.|++|++||+.+++.+.. +.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD---IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE---eccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 34789999999999999999999999999999999999977665 468999999999999999999999999999999
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec--CCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
+.+++..... . +|...|.+++|+| ++.++++++.|+.|++||+.+++++.++.+|...|+++
T Consensus 686 ~~~~~~~~~~-----------~-----~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 686 SATGKLVHTY-----------D-----EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749 (1249)
T ss_dssp TTTCCEEEEE-----------E-----CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred CCCCceEEEE-----------c-----CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence 9998764322 2 2666999999999 55689999999999999999999999999999999988
Q ss_pred Ee
Q 023642 276 IT 277 (279)
Q Consensus 276 ~~ 277 (279)
..
T Consensus 750 ~~ 751 (1249)
T 3sfz_A 750 RF 751 (1249)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.85 E-value=6.6e-20 Score=159.57 Aligned_cols=162 Identities=17% Similarity=0.133 Sum_probs=129.6
Q ss_pred eccccceEeeeeecCCC-------CceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcc
Q 023642 100 SAADCCHMLSRYLPVNG-------PWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT 171 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~-------~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 171 (279)
++.++.+.+|++..... ...+.+|...|.+++|+| ++.+|++++.|+.|++||++++...........|...
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 279 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 279 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence 45688899998866322 344679999999999999 7889999999999999999976311122224578889
Q ss_pred eEEEEECCCCC-EEEEEeCCCeEEEEECCCCce-eeeeccccccceeEEeeCCCCCccccEEEEEEecCCC-EEEEecCC
Q 023642 172 VTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSD 248 (279)
Q Consensus 172 v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~t~s~d 248 (279)
|.+++|+|++. +|++++.|+.|++||+++... .. .+.. |...|.+++|+|+++ +|++++.|
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~-----------~~~~-----h~~~v~~i~~sp~~~~~l~s~~~d 343 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH-----------SFES-----HKDEIFQVQWSPHNETILASSGTD 343 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE-----------EEEC-----CSSCEEEEEECSSCTTEEEEEETT
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE-----------Eeec-----CCCCEEEEEECCCCCCEEEEEeCC
Confidence 99999999987 688999999999999997432 11 1222 556999999999985 68899999
Q ss_pred CeEEEEECCC--------------CeEEEEEeCCCcceeEEEe
Q 023642 249 DCIYVYDLEA--------------NKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 249 ~~i~vwd~~~--------------~~~~~~~~~h~~~v~~v~~ 277 (279)
+.|++||+.. .+.+..+.+|...|+++..
T Consensus 344 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 386 (430)
T 2xyi_A 344 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 386 (430)
T ss_dssp SCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE
T ss_pred CcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE
Confidence 9999999986 3678888999999998865
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.5e-20 Score=177.87 Aligned_cols=183 Identities=17% Similarity=0.163 Sum_probs=148.8
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCeEEeeeeecc
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAK 166 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 166 (279)
.+++++.+ .+.|+.+.+|++........+.+|...|.+++|+| ++.++++|+.|+.|++||+.++.+... +.
T Consensus 664 ~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~---~~ 740 (1249)
T 3sfz_A 664 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT---MF 740 (1249)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE---EC
T ss_pred EEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe---ec
Confidence 36777765 45688999999887776677899999999999999 566899999999999999999977654 46
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecccc--------------ccceeEEeeCCC---------
Q 023642 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTE--------------IHDGLDFSAADD--------- 223 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--------------~~~~~~~~~~~~--------- 223 (279)
+|...|.+++|+|++++|++++.|+.|++||+.++.......... ....+.|.+++.
T Consensus 741 ~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~ 820 (1249)
T 3sfz_A 741 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK 820 (1249)
T ss_dssp CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTE
T ss_pred CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCc
Confidence 899999999999999999999999999999998876533222111 000111111111
Q ss_pred ----------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 224 ----------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 224 ----------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
.+|...|.+++|+|+++++++++.|+.|++||+.++..+..+.+|...|+++..
T Consensus 821 v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~ 890 (1249)
T 3sfz_A 821 VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMF 890 (1249)
T ss_dssp EEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEE
Confidence 257789999999999999999999999999999999999999999999998865
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=162.11 Aligned_cols=162 Identities=14% Similarity=0.131 Sum_probs=134.3
Q ss_pred eeccccceEeeeeecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeee----------ccC
Q 023642 99 FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDIL----------AKS 167 (279)
Q Consensus 99 ~~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------~~~ 167 (279)
+...+..+.+|++........+.+|.+.|++++|+| ++++|++|+.|+.|++||+.++........ ...
T Consensus 18 ~~~~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
T 4a11_B 18 LRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDV 97 (408)
T ss_dssp HHHHHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTC
T ss_pred eeeccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccccccccccc
Confidence 344556667787777777777899999999999999 999999999999999999998754332110 125
Q ss_pred CCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC---CCEEE
Q 023642 168 LRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELV 243 (279)
Q Consensus 168 ~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~ 243 (279)
|...|.+++|+| ++.+|++++.|+.|++||+.+++...... +...+.++.|+|. +.+++
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~ 160 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-----------------FEETVYSHHMSPVSTKHCLVA 160 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-----------------CSSCEEEEEECSSCSSCCEEE
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-----------------CCCceeeeEeecCCCCCcEEE
Confidence 888999999999 77899999999999999999987654332 2337889999885 44999
Q ss_pred EecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 244 AGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 244 t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+++.|+.|++||+++++++..+.+|...|.++..
T Consensus 161 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~ 194 (408)
T 4a11_B 161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSW 194 (408)
T ss_dssp EEESSSSEEEEESSSSCCCEEECCCCSCEEEEEE
T ss_pred EEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEE
Confidence 9999999999999999999999999999998865
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-19 Score=149.02 Aligned_cols=155 Identities=14% Similarity=0.110 Sum_probs=131.6
Q ss_pred cceEeeeeecCCC-----------CceeeCCCC--CeEEEEECCCCCEEEEEeCCCcEEEEEcCC-CeEEeeeeeccCCC
Q 023642 104 CCHMLSRYLPVNG-----------PWPVDQTTS--RAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLR 169 (279)
Q Consensus 104 ~~~~~~~~~~~~~-----------~~~l~~h~~--~V~~~~~spd~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~ 169 (279)
+.+.+|++..... ...+..|.. .+.+++|+|++++|++++.|+.|++||+.+ +..... ...|.
T Consensus 142 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~ 218 (369)
T 3zwl_B 142 GSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDS---IDLHE 218 (369)
T ss_dssp CEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEE---EECCS
T ss_pred CEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEE---EecCC
Confidence 7888888876542 234566666 999999999999999999999999999998 444443 45788
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC
Q 023642 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~ 249 (279)
..|.+++|+|++++|++++.|+.|++||+.+++...... +...+.+++|+|+++++++++.++
T Consensus 219 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 219 KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-----------------TDCPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----------------CSSCEEEEEECSSSSEEEEEECCC
T ss_pred CceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-----------------CCCCceeEEecCCCceEEEeecCC
Confidence 899999999999999999999999999999987654332 234799999999999999999888
Q ss_pred --------------eEEEEECCCCeEEEEEeCCCcceeEEEee
Q 023642 250 --------------CIYVYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 250 --------------~i~vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
.+++||+.+++++..+.+|...|+++..+
T Consensus 282 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 324 (369)
T 3zwl_B 282 AKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS 324 (369)
T ss_dssp -------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred CceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC
Confidence 89999999999999999999999988753
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-19 Score=148.99 Aligned_cols=173 Identities=12% Similarity=0.005 Sum_probs=134.7
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.|+.+.+|++........+..|...|.+++|+|++++|++++.|+.|++|++...........+..|...|.+++|
T Consensus 35 ~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-- 112 (313)
T 3odt_A 35 VSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF-- 112 (313)
T ss_dssp EETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--
T ss_pred EEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--
Confidence 567888999998666556678899999999999999999999999999999999765322222335688899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcee-eeeccccccceeEEee-CCC-----------------------CC-ccccEEEE
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTME-SLANVTEIHDGLDFSA-ADD-----------------------GG-YSFGIFSL 233 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~-~~~-----------------------~~-~~~~v~~~ 233 (279)
++++|++++.|+.|++|| .+... ...........+.+.+ .+. .. |...+.++
T Consensus 113 ~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~ 190 (313)
T 3odt_A 113 QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHL 190 (313)
T ss_dssp ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEE
T ss_pred cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEE
Confidence 678999999999999999 22222 1111111111222222 111 22 78899999
Q ss_pred EEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 234 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 234 ~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+|+|++. +++++.|+.|++||+++++++..+.+|...|+++..
T Consensus 191 ~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 233 (313)
T 3odt_A 191 AVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKL 233 (313)
T ss_dssp EEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEE
Confidence 9999998 889999999999999999999999999999998865
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-19 Score=148.83 Aligned_cols=154 Identities=12% Similarity=0.174 Sum_probs=128.3
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
.+.++.+.+|+ .......+..|...|.+++|+| ++.+|++++.|+.|++||.. ...... ...|...|.+++|+
T Consensus 120 ~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~--~~~~~~~i~~~~~~ 193 (313)
T 3odt_A 120 GSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKTF--SGIHNDVVRHLAVV 193 (313)
T ss_dssp EETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEEE--CSSCSSCEEEEEEE
T ss_pred EeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEEE--eccCcccEEEEEEc
Confidence 45678888888 3444456789999999999998 99999999999999999933 333321 23388899999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 179 p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
|++. +++++.|+.|++||+++++...... +|...|.+++|+|++ .|++++.|+.|++||+++
T Consensus 194 ~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~----------------~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~ 255 (313)
T 3odt_A 194 DDGH-FISCSNDGLIKLVDMHTGDVLRTYE----------------GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKEN 255 (313)
T ss_dssp ETTE-EEEEETTSEEEEEETTTCCEEEEEE----------------CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTT
T ss_pred CCCe-EEEccCCCeEEEEECCchhhhhhhh----------------cCCceEEEEEEecCC-CEEEEecCCEEEEEECCC
Confidence 9998 9999999999999999887643221 156699999999999 588999999999999999
Q ss_pred CeEEEEEeCCCcceeEEEe
Q 023642 259 NKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 259 ~~~~~~~~~h~~~v~~v~~ 277 (279)
++++..+..|...|.++..
T Consensus 256 ~~~~~~~~~~~~~i~~~~~ 274 (313)
T 3odt_A 256 GSLKQVITLPAISIWSVDC 274 (313)
T ss_dssp CCEEEEEECSSSCEEEEEE
T ss_pred CceeEEEeccCceEEEEEE
Confidence 9999999999999988764
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.4e-20 Score=161.14 Aligned_cols=166 Identities=13% Similarity=0.043 Sum_probs=123.8
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCceeeCCCC-----CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE-----
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTS-----RAYVSQFSADGSLFVAGFQASQIRIYDVERGWK----- 158 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~-----~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~----- 158 (279)
.++|+|.. .+.++.+.+|+... ....+. |.. .|.+++|||||++|++|+.||+|++||+.++..
T Consensus 92 awSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~ 168 (588)
T 2j04_A 92 KPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEF 168 (588)
T ss_dssp EECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCC
T ss_pred EECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccc
Confidence 56888775 56788899998322 111234 554 499999999999999999999999999998742
Q ss_pred --Eeee-eeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEE
Q 023642 159 --IQKD-ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF 235 (279)
Q Consensus 159 --~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 235 (279)
+... ....+|...|.+++|+||| +++++.|+.+++||+.++....... .+.+ +|...|.+++|
T Consensus 169 i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~--------tL~~----~h~~~V~svaF 234 (588)
T 2j04_A 169 YFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSR--------MIQN----ASRRKITDLKI 234 (588)
T ss_dssp EEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEE--------EEEC----CCSSCCCCEEE
T ss_pred eeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccccee--------eecc----cccCcEEEEEE
Confidence 2221 0125688899999999999 8889999999999998876421000 0100 15568999999
Q ss_pred ecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 236 STDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 236 sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+ |+.|++++ +++|++||+.+++......+|.+.|+.+..
T Consensus 235 s--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~ 273 (588)
T 2j04_A 235 V--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPL 273 (588)
T ss_dssp E--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEE
T ss_pred E--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEe
Confidence 9 68999887 699999999988774444489999887653
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-19 Score=154.53 Aligned_cols=168 Identities=12% Similarity=0.069 Sum_probs=122.7
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeEEeeee-------------ec
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDI-------------LA 165 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~-~l~s~~~d~~i~iwd~~~~~~~~~~~-------------~~ 165 (279)
.+.++.+.+|++........+.+|...|.+++|+|+++ +|++|+.|+.|++||+..+....... ..
T Consensus 162 ~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (408)
T 4a11_B 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241 (408)
T ss_dssp EESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSS
T ss_pred EcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccc
Confidence 45678899999887777788999999999999999998 58999999999999998764211111 11
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccc---c------------ceeEEeeCCC-------
Q 023642 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEI---H------------DGLDFSAADD------- 223 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~------------~~~~~~~~~~------- 223 (279)
..|...|.+++|+|++++|++++.|+.|++||+.+++.......... . ..+.+.....
T Consensus 242 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~ 321 (408)
T 4a11_B 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTV 321 (408)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEET
T ss_pred ccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEEC
Confidence 46888999999999999999999999999999998765322110000 0 0000000000
Q ss_pred ---------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 224 ---------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 224 ---------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
.+|...|.+++|+|++++|++++.|+.|++||+.+++++.....
T Consensus 322 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 374 (408)
T 4a11_B 322 YSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE 374 (408)
T ss_dssp TTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------
T ss_pred cCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCc
Confidence 35778999999999999999999999999999999887766543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-20 Score=161.33 Aligned_cols=141 Identities=17% Similarity=0.255 Sum_probs=111.5
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee-----eccCCCcceEEEEECCCC-CEEEEEeCCCeE
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI-----LAKSLRWTVTDTSLSPDQ-RHLVYASMSPIV 193 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i 193 (279)
+.+|...|.+++|+|++++|++| .|+.|++||+.++....... ....|...|.+++|+|++ ++|++++.|+.|
T Consensus 173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 46899999999999999999999 79999999998543322211 246888899999999998 999999999999
Q ss_pred EEEECCCCceeee-eccccccceeEEeeCCC-------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCC-CeEEEE
Q 023642 194 HIVDVGSGTMESL-ANVTEIHDGLDFSAADD-------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLR 264 (279)
Q Consensus 194 ~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~-~~~~~~ 264 (279)
++||++++..... .. .+..+.. .+|...|.+++|+|+|++|++++. +.|++||+++ ++++..
T Consensus 252 ~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~ 322 (447)
T 3dw8_B 252 RLCDMRASALCDRHSK--------LFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVET 322 (447)
T ss_dssp EEEETTTCSSSCTTCE--------EECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCC
T ss_pred EEEECcCCccccceee--------EeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccce
Confidence 9999998774100 00 1111100 012348999999999999999998 9999999997 889999
Q ss_pred EeCCCc
Q 023642 265 ILAHTV 270 (279)
Q Consensus 265 ~~~h~~ 270 (279)
+.+|..
T Consensus 323 ~~~~~~ 328 (447)
T 3dw8_B 323 YQVHEY 328 (447)
T ss_dssp EESCGG
T ss_pred eecccc
Confidence 998864
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=152.26 Aligned_cols=162 Identities=14% Similarity=0.173 Sum_probs=130.1
Q ss_pred eccccceEeeeeec---------CCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-CeEEeeeeeccCCC
Q 023642 100 SAADCCHMLSRYLP---------VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLR 169 (279)
Q Consensus 100 ~~~d~~~~~~~~~~---------~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~ 169 (279)
.+.|+.+.+|++.. ......+. |...|.+++|+|++ +++++.|+.|++||+.+ +..... .....|.
T Consensus 118 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~ 193 (342)
T 1yfq_A 118 ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGT-IEESGLK 193 (342)
T ss_dssp EETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCE-EEECSCS
T ss_pred EcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccce-eeecCCC
Confidence 46788899998876 44444444 99999999999987 99999999999999988 543212 1234677
Q ss_pred cceEEEEECC-CCCEEEEEeCCCeEEEEECCCC------ceeeeeccccccceeEEeeCC----CCCccccEEEEEEecC
Q 023642 170 WTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSG------TMESLANVTEIHDGLDFSAAD----DGGYSFGIFSLKFSTD 238 (279)
Q Consensus 170 ~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~sp~ 238 (279)
..|.+++|+| +++++++++.|+.+++||+... .... .+..+. ..+|...|.+++|+|+
T Consensus 194 ~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~s~~ 262 (342)
T 1yfq_A 194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF-----------AFRCHRLNLKDTNLAYPVNSIEFSPR 262 (342)
T ss_dssp SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE-----------EEECCCCCTTCCSSCCCEEEEEECTT
T ss_pred CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce-----------eeecccccccccccceeEEEEEEcCC
Confidence 8899999999 9999999999999999999876 2221 122111 1124569999999999
Q ss_pred CCEEEEecCCCeEEEEECCCCeEEEEEeCC-CcceeEEE
Q 023642 239 GRELVAGSSDDCIYVYDLEANKLSLRILAH-TVNIALWI 276 (279)
Q Consensus 239 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h-~~~v~~v~ 276 (279)
+++|++++.|+.|++||+.+++++..+.+| ...|+++.
T Consensus 263 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~ 301 (342)
T 1yfq_A 263 HKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA 301 (342)
T ss_dssp TCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE
T ss_pred CCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec
Confidence 999999999999999999999999999998 99988764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-19 Score=156.45 Aligned_cols=155 Identities=17% Similarity=0.171 Sum_probs=131.6
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
++.|+.+.+|++........+.+|...|.+++|++ .+|++|+.|+.|++||+.++..........+|...|.+++|
T Consensus 189 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-- 264 (435)
T 1p22_A 189 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-- 264 (435)
T ss_dssp EETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--
T ss_pred EcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--
Confidence 46788899999877776677889999999999975 59999999999999999887655433446788999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
++++|++++.|+.|++||+++++..... . +|...|.++.|+ +.++++|+.|+.|++||++++
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~-----------~-----~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTSTCEFVRTL-----------N-----GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEE-----------E-----CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC
T ss_pred CCCEEEEEeCCCeEEEEECCcCcEEEEE-----------c-----CCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC
Confidence 7889999999999999999998764322 1 155689999984 789999999999999999999
Q ss_pred eEEEEEeCCCcceeEEE
Q 023642 260 KLSLRILAHTVNIALWI 276 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v~ 276 (279)
+++.++.+|...|.++.
T Consensus 327 ~~~~~~~~h~~~v~~~~ 343 (435)
T 1p22_A 327 ACLRVLEGHEELVRCIR 343 (435)
T ss_dssp CEEEEECCCSSCEEEEE
T ss_pred CEEEEEeCCcCcEEEEE
Confidence 99999999999998875
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=158.58 Aligned_cols=155 Identities=19% Similarity=0.157 Sum_probs=131.9
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.|+.+.+|++........+.+|...|.+++|+|++++|++|+.|+.|++||+.+++++.. +.+|...|.+++|+
T Consensus 286 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~- 361 (464)
T 3v7d_B 286 GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT---LQGHTALVGLLRLS- 361 (464)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEEC-
T ss_pred EeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE---EeCCCCcEEEEEEc-
Confidence 45688899999876666667889999999999999999999999999999999999987665 46888999999997
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
+.+|++++.|+.|++||+.++....... +...+..++|+|++++|++++ |+.|++||++++
T Consensus 362 -~~~l~s~s~dg~v~vwd~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 362 -DKFLVSAAADGSIRGWDANDYSRKFSYH-----------------HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp -SSEEEEEETTSEEEEEETTTCCEEEEEE-----------------CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred -CCEEEEEeCCCcEEEEECCCCceeeeec-----------------CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 5799999999999999999876532211 233677889999999999998 899999999999
Q ss_pred eEEEE-EeCCCcceeEEEe
Q 023642 260 KLSLR-ILAHTVNIALWIT 277 (279)
Q Consensus 260 ~~~~~-~~~h~~~v~~v~~ 277 (279)
+.+.. +.+|...|.++..
T Consensus 423 ~~~~~~~~~~~~~v~~v~~ 441 (464)
T 3v7d_B 423 KLVHANILKDADQIWSVNF 441 (464)
T ss_dssp CEEESCTTTTCSEEEEEEE
T ss_pred cEEehhhccCCCcEEEEEe
Confidence 99986 6678888888754
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.84 E-value=5.4e-20 Score=157.62 Aligned_cols=168 Identities=11% Similarity=0.033 Sum_probs=131.7
Q ss_pred eccccceEeeeeecCC------CCceeeCCCCCeEEEEECCC----C---CEEEEEeCCCcEEEEEcCCCeE-----Eee
Q 023642 100 SAADCCHMLSRYLPVN------GPWPVDQTTSRAYVSQFSAD----G---SLFVAGFQASQIRIYDVERGWK-----IQK 161 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~------~~~~l~~h~~~V~~~~~spd----~---~~l~s~~~d~~i~iwd~~~~~~-----~~~ 161 (279)
.+.|+.+.+|++.... ....+.+|...|.+++|+|+ + ++|++++.|+.|++||+.++.. ...
T Consensus 32 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 111 (397)
T 1sq9_A 32 CSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK 111 (397)
T ss_dssp EETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE
T ss_pred EcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccccccee
Confidence 4678899999988766 45568899999999999999 9 9999999999999999987754 333
Q ss_pred eeeccCC-----CcceEEEEEC----CCCCE-EEEEeCCCeEEEEECCC------CceeeeeccccccceeEEee--CCC
Q 023642 162 DILAKSL-----RWTVTDTSLS----PDQRH-LVYASMSPIVHIVDVGS------GTMESLANVTEIHDGLDFSA--ADD 223 (279)
Q Consensus 162 ~~~~~~~-----~~~v~~~~~s----p~~~~-l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~--~~~ 223 (279)
...| ...|.+++|+ |++++ |++++.|+.|++||+.+ +....... ...+.+ ...
T Consensus 112 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 182 (397)
T 1sq9_A 112 ---LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP------TLELQGTVESP 182 (397)
T ss_dssp ---ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC------EEEEEEEECCS
T ss_pred ---ecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccC------cceeeeeeccc
Confidence 3456 4789999999 99999 99999999999999987 44322100 001111 000
Q ss_pred CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC---C---CcceeEEEe
Q 023642 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---H---TVNIALWIT 277 (279)
Q Consensus 224 ~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~---h---~~~v~~v~~ 277 (279)
..|...|.+++|+|++ +|++++.|+.|++||+++++++..+.+ | ...|.++..
T Consensus 183 ~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 183 MTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp SSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred cCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence 1255689999999999 999999999999999999999999999 9 999988865
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=154.30 Aligned_cols=154 Identities=11% Similarity=0.076 Sum_probs=115.5
Q ss_pred ccccceEeeeeecCC----------------CCceeeCCCCCeEEEEECCCCCEEEEEeCCCc-EEEEEcCCCeEEeeee
Q 023642 101 AADCCHMLSRYLPVN----------------GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQ-IRIYDVERGWKIQKDI 163 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~----------------~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~-i~iwd~~~~~~~~~~~ 163 (279)
..++.+.+|++.... ....+.+|.+.|++++|+|++++|++|+.|++ |++||+.+++++..+.
T Consensus 156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~ 235 (355)
T 3vu4_A 156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR 235 (355)
T ss_dssp SCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE
T ss_pred CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence 467788899887543 14668999999999999999999999999998 9999999998776521
Q ss_pred eccC-CCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccc---------cceeEEeeCCCCCccccEEEE
Q 023642 164 LAKS-LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEI---------HDGLDFSAADDGGYSFGIFSL 233 (279)
Q Consensus 164 ~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~ 233 (279)
.+ |...|.+++|+|++++|++++.|++|++||+..+........... ..-..+.-.. ........+
T Consensus 236 --~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 311 (355)
T 3vu4_A 236 --RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSV--DKHVRGCKI 311 (355)
T ss_dssp --CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCC--CTTCCCCEE
T ss_pred --cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEecc--CCCCCceEE
Confidence 24 888999999999999999999999999999987643211111100 0000011000 111234668
Q ss_pred EEecCCCEEEEecCCCeEEEEECCC
Q 023642 234 KFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 234 ~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
+|++++++|++++.|+.+++|++..
T Consensus 312 a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 312 AWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp EESSSSEEEEEETTTTEEEEEEEEE
T ss_pred EEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 9999999999999999999999865
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-20 Score=155.61 Aligned_cols=157 Identities=8% Similarity=0.003 Sum_probs=126.3
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC---------CCeEEeeeeeccCCCc
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE---------RGWKIQKDILAKSLRW 170 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~---------~~~~~~~~~~~~~~~~ 170 (279)
++.|+.+.+|++........+. ...|.++.|+|+ +++++.|++|++|+.. +++.+.. ...+|..
T Consensus 54 g~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~ 126 (343)
T 3lrv_A 54 RCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLRE--IEVDSAN 126 (343)
T ss_dssp EEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEE--EECCCSS
T ss_pred ECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEE--eecCCCC
Confidence 5678999999987665554454 567888889998 9999999999999766 3333332 1236667
Q ss_pred ceEEEEECC--CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC
Q 023642 171 TVTDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 171 ~v~~~~~sp--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d 248 (279)
.|.+++|+| +++++++++.|+.|++||+++++....... .|...+.+++|+|+|.+|++|+.|
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---------------~~~~~i~~~~~~pdg~~lasg~~d 191 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA---------------KSDVEYSSGVLHKDSLLLALYSPD 191 (343)
T ss_dssp CEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC---------------CSSCCCCEEEECTTSCEEEEECTT
T ss_pred CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec---------------CCCCceEEEEECCCCCEEEEEcCC
Confidence 899999999 999999999999999999998886332211 133479999999999999999999
Q ss_pred CeEEEEECCCCeEE-EEEeC-CCcceeEEEee
Q 023642 249 DCIYVYDLEANKLS-LRILA-HTVNIALWITC 278 (279)
Q Consensus 249 ~~i~vwd~~~~~~~-~~~~~-h~~~v~~v~~~ 278 (279)
+.|++||+++++.+ ..+.+ |...|+++..+
T Consensus 192 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs 223 (343)
T 3lrv_A 192 GILDVYNLSSPDQASSRFPVDEEAKIKEVKFA 223 (343)
T ss_dssp SCEEEEESSCTTSCCEECCCCTTSCEEEEEEC
T ss_pred CEEEEEECCCCCCCccEEeccCCCCEEEEEEe
Confidence 99999999999888 88988 99999998753
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-20 Score=159.47 Aligned_cols=171 Identities=13% Similarity=0.082 Sum_probs=121.8
Q ss_pred eccccceEeeeeecCCC-CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEe-eeeeccCCCcceEEEEE
Q 023642 100 SAADCCHMLSRYLPVNG-PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ-KDILAKSLRWTVTDTSL 177 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~-~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~ 177 (279)
.+.+..+.+|+...... ...+.+|...+..+.|+|+++++++++.|+.+++||..+++... .......|...|.+++|
T Consensus 205 gs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 284 (420)
T 4gga_A 205 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 284 (420)
T ss_dssp EETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEE
T ss_pred EeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeee
Confidence 34566677776554332 24578999999999999999999999999999999998764321 12234678889999999
Q ss_pred CCCCC-EEEEE--eCCCeEEEEECCCCceeeeeccccccceeEEeeCCC---------------------------CCcc
Q 023642 178 SPDQR-HLVYA--SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD---------------------------GGYS 227 (279)
Q Consensus 178 sp~~~-~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~ 227 (279)
+|++. .++++ +.|++|++||+.++..............+.+.+++. .+|.
T Consensus 285 ~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~ 364 (420)
T 4gga_A 285 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT 364 (420)
T ss_dssp CTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS
T ss_pred CCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC
Confidence 99765 45543 479999999999988754443222222222221111 5799
Q ss_pred ccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCc
Q 023642 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 228 ~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~ 270 (279)
..|++++|+|||++|+||+.|++|+|||+....+..+.+.+..
T Consensus 365 ~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~ 407 (420)
T 4gga_A 365 SRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKA 407 (420)
T ss_dssp SCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--------
T ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccC
Confidence 9999999999999999999999999999987666666655544
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-19 Score=154.47 Aligned_cols=155 Identities=19% Similarity=0.209 Sum_probs=132.4
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
++.|+.+.+|+.........+.+|...|.+++| ++++|++|+.||.|++||+.+++.+.. +..|...|.+++|++
T Consensus 149 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~l~~~~ 223 (435)
T 1p22_A 149 GLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT---LIHHCEAVLHLRFNN 223 (435)
T ss_dssp EESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE---ECCCCSCEEEEECCT
T ss_pred EeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEE---EcCCCCcEEEEEEcC
Confidence 567889999998777666778999999999999 789999999999999999999977655 467888999999974
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
.++++++.|+.|++||+.++........ +. +|...|.+++| ++++|++++.|+.|++||++++
T Consensus 224 --~~l~s~s~dg~i~vwd~~~~~~~~~~~~--------~~-----~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~ 286 (435)
T 1p22_A 224 --GMMVTCSKDRSIAVWDMASPTDITLRRV--------LV-----GHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC 286 (435)
T ss_dssp --TEEEEEETTSCEEEEECSSSSCCEEEEE--------EC-----CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC
T ss_pred --CEEEEeeCCCcEEEEeCCCCCCceeeeE--------ec-----CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC
Confidence 5999999999999999998765322111 11 26669999998 6889999999999999999999
Q ss_pred eEEEEEeCCCcceeEEE
Q 023642 260 KLSLRILAHTVNIALWI 276 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v~ 276 (279)
+++..+.+|...|.++.
T Consensus 287 ~~~~~~~~~~~~v~~~~ 303 (435)
T 1p22_A 287 EFVRTLNGHKRGIACLQ 303 (435)
T ss_dssp CEEEEEECCSSCEEEEE
T ss_pred cEEEEEcCCCCcEEEEE
Confidence 99999999999998875
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.2e-20 Score=160.50 Aligned_cols=131 Identities=15% Similarity=0.098 Sum_probs=106.9
Q ss_pred CCCCCeEEEEECCCCCEEE----EEeCCCcEEEEEcCCC--------eEEeeeeeccCCCcceEEEEECCC-CCEEEEEe
Q 023642 122 QTTSRAYVSQFSADGSLFV----AGFQASQIRIYDVERG--------WKIQKDILAKSLRWTVTDTSLSPD-QRHLVYAS 188 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~----s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~ 188 (279)
.+...|.+++|+|++++|+ +|+.|+.|++||+.++ +.+.......+|...|.+++|+|+ +.+|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 4667899999999999999 7889999999998754 222223345678899999999998 78999999
Q ss_pred CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 189 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
.|++|++||++++...... . +|...|.+++|+|+|++|++|+.|++|++||++ ++....+..|
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~-----------~-----~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~ 232 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCAT-----------L-----PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCP 232 (434)
T ss_dssp TTSCEEEEEESSSEEEEEE-----------E-----CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCC
T ss_pred CCCeEEEEEcCCCcceeec-----------c-----CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCC
Confidence 9999999999987542111 1 155689999999999999999999999999998 6677777655
Q ss_pred C
Q 023642 269 T 269 (279)
Q Consensus 269 ~ 269 (279)
.
T Consensus 233 ~ 233 (434)
T 2oit_A 233 P 233 (434)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=170.73 Aligned_cols=136 Identities=15% Similarity=0.122 Sum_probs=115.7
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~ 199 (279)
..+|.+.|++++|+|++++||+|+.|+.|+|||....+.... ..|..+|.+++|+| +++|++++.|++|++||+.
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~----~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~ 87 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK----LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY 87 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE----CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE----cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence 458999999999999999999999999999999988765432 35777899999999 8899999999999999999
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEE-----------EEEeCC
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-----------LRILAH 268 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~-----------~~~~~h 268 (279)
+++...... |...|++++|+|++++|++|+.|++|++||++++++. ..+.+|
T Consensus 88 ~~~~~~~~~-----------------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h 150 (902)
T 2oaj_A 88 SQKVLTTVF-----------------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR 150 (902)
T ss_dssp TCSEEEEEE-----------------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSC
T ss_pred CCcEEEEEc-----------------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccC
Confidence 987643221 3348999999999999999999999999999988764 234678
Q ss_pred CcceeEEEe
Q 023642 269 TVNIALWIT 277 (279)
Q Consensus 269 ~~~v~~v~~ 277 (279)
...|+++..
T Consensus 151 ~~~V~sl~~ 159 (902)
T 2oaj_A 151 LSPIVSIQW 159 (902)
T ss_dssp CCCCCEEEE
T ss_pred CCCeEEEEE
Confidence 888888764
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-19 Score=166.97 Aligned_cols=145 Identities=17% Similarity=0.081 Sum_probs=117.7
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC--CCEEEEEeCCCeEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHI 195 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~i 195 (279)
.++.+|.+.|++++|+|++++|++|+.||.|++||+..+... ....+.+|.++|.+++|+|+ +++|++++.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~-~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK-LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEE-EEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCc-cceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 357899999999999999999999999999999999854322 22345789999999999998 999999999999999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC--CCEEEEecCCCeEEEEECCCC--eEEEEEeCCCcc
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN--KLSLRILAHTVN 271 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~t~s~d~~i~vwd~~~~--~~~~~~~~h~~~ 271 (279)
||+.++........ . +|...|.+++|+|+ +.++++++.|+.|++||++++ .....+.+|...
T Consensus 82 wd~~~~~~~~~~~~---------~-----~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~ 147 (753)
T 3jro_A 82 WKEENGRWSQIAVH---------A-----VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147 (753)
T ss_dssp EEEETTEEEEEEEE---------C-----CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC
T ss_pred EECCCCcccccccc---------c-----CCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc
Confidence 99998763222211 1 26669999999999 999999999999999999887 355677889999
Q ss_pred eeEEEe
Q 023642 272 IALWIT 277 (279)
Q Consensus 272 v~~v~~ 277 (279)
|.++..
T Consensus 148 v~~l~~ 153 (753)
T 3jro_A 148 VNSASW 153 (753)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 988865
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=150.14 Aligned_cols=139 Identities=14% Similarity=0.076 Sum_probs=104.2
Q ss_pred eccccceEeeeeecCCCCceeeCCC---CCeEEEEECCCCCEE------------EEEeCCCcEEEEEcCCCeEEeeeee
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTT---SRAYVSQFSADGSLF------------VAGFQASQIRIYDVERGWKIQKDIL 164 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~---~~V~~~~~spd~~~l------------~s~~~d~~i~iwd~~~~~~~~~~~~ 164 (279)
.+.|+.+.+|++...+...++.+|. ..|.+++|+|+|.++ ++|+.|++|++||..+++.+.....
T Consensus 199 gS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~ 278 (356)
T 2w18_A 199 TTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLY 278 (356)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEE
T ss_pred ecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEe
Confidence 4679999999998777667787654 467888999999986 5688899999999999977654221
Q ss_pred --ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccE-EEEEEecCCCE
Q 023642 165 --AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI-FSLKFSTDGRE 241 (279)
Q Consensus 165 --~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~sp~g~~ 241 (279)
..+|...+.+..+ ++.++++++.|++|+|||+.++++..... +|...+ ..++|+|||++
T Consensus 279 ~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~----------------gH~~~vvs~vafSPDG~~ 340 (356)
T 2w18_A 279 CLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLP----------------PVSDQHWSFVKWSGTDSH 340 (356)
T ss_dssp CCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEEC----------------CC--CCCCEEEECSSSSE
T ss_pred eccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEec----------------CCCCCeEEEEEECCCCCE
Confidence 2356554443333 48899999999999999999998754321 143344 46899999999
Q ss_pred EEEecCCCeEEEEEC
Q 023642 242 LVAGSSDDCIYVYDL 256 (279)
Q Consensus 242 l~t~s~d~~i~vwd~ 256 (279)
|++|+.|++|+|||+
T Consensus 341 LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 341 LLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEEECCCcEEEecC
Confidence 999999999999995
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=151.27 Aligned_cols=173 Identities=10% Similarity=0.044 Sum_probs=133.5
Q ss_pred eccccceEeeeeecCCC---CceeeCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEc-CCCeEEeeeeeccC--CCcce
Q 023642 100 SAADCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDV-ERGWKIQKDILAKS--LRWTV 172 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~---~~~l~~h~~~V~~~~~spd~~-~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~--~~~~v 172 (279)
.+.|+.+.+|++..... ...+.+|...|.+++|+|+++ +|++|+.|+.|++||+ .++... .+.. |...|
T Consensus 29 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~----~~~~~~~~~~v 104 (342)
T 1yfq_A 29 TSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ----ALTNNEANLGI 104 (342)
T ss_dssp EETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE----ECBSCCCCSCE
T ss_pred EcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceE----eccccCCCCce
Confidence 45788899999876652 345679999999999999999 9999999999999999 877542 2456 89999
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCC---------CceeeeeccccccceeEE-----------------eeCC-C--
Q 023642 173 TDTSLSPDQRHLVYASMSPIVHIVDVGS---------GTMESLANVTEIHDGLDF-----------------SAAD-D-- 223 (279)
Q Consensus 173 ~~~~~sp~~~~l~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~-----------------~~~~-~-- 223 (279)
.+++|+| +.+|++++.|+.|++||+++ ++.............+.+ .... .
T Consensus 105 ~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 183 (342)
T 1yfq_A 105 CRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183 (342)
T ss_dssp EEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC
T ss_pred EEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccc
Confidence 9999999 99999999999999999876 443211111111111111 1001 0
Q ss_pred ------CCccccEEEEEEec-CCCEEEEecCCCeEEEEECCCC------eEEEEEeCCCc---------ceeEEEe
Q 023642 224 ------GGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN------KLSLRILAHTV---------NIALWIT 277 (279)
Q Consensus 224 ------~~~~~~v~~~~~sp-~g~~l~t~s~d~~i~vwd~~~~------~~~~~~~~h~~---------~v~~v~~ 277 (279)
..|...+.+++|+| +++++++++.|+.|++|++..+ +....+.+|.. .|+++..
T Consensus 184 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (342)
T 1yfq_A 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259 (342)
T ss_dssp CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEE
T ss_pred cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEE
Confidence 23567899999999 9999999999999999999887 78888988866 8887754
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-18 Score=143.84 Aligned_cols=164 Identities=15% Similarity=0.175 Sum_probs=117.3
Q ss_pred eecCCCCceeeC--CCC--CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEE
Q 023642 111 YLPVNGPWPVDQ--TTS--RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186 (279)
Q Consensus 111 ~~~~~~~~~l~~--h~~--~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 186 (279)
+.|..+..+|.. ..+ .+++++||+++ +|++| .|++|+|||+.+++++.. ....+|...|.+++|+|++++|++
T Consensus 8 ~~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~-~~~~~~~~~V~~v~~~~~~~~l~s 84 (318)
T 4ggc_A 8 YIPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGNYLAV 84 (318)
T ss_dssp CCCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSSEEEE
T ss_pred ccCCCCCEEeeCCCCcccccceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEE-EEecCCCCeEEEEEECCCCCEEEE
Confidence 344444445532 222 35789999986 66665 489999999999977654 345678889999999999999999
Q ss_pred EeCCCeEEEEECCCCceeeeeccccc-ccee------EEeeCCC------------------CCccccEEEEEEecCCCE
Q 023642 187 ASMSPIVHIVDVGSGTMESLANVTEI-HDGL------DFSAADD------------------GGYSFGIFSLKFSTDGRE 241 (279)
Q Consensus 187 ~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~------~~~~~~~------------------~~~~~~v~~~~~sp~g~~ 241 (279)
|+.|++|++||+++++.......... .... ...+..+ .+|...+..+.|++++++
T Consensus 85 gs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (318)
T 4ggc_A 85 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH 164 (318)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE
T ss_pred EECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCE
Confidence 99999999999999886433221110 0000 0000000 357788999999999999
Q ss_pred EEEecCCCeEEEEECCCCe----EEEEEeCCCcceeEEEe
Q 023642 242 LVAGSSDDCIYVYDLEANK----LSLRILAHTVNIALWIT 277 (279)
Q Consensus 242 l~t~s~d~~i~vwd~~~~~----~~~~~~~h~~~v~~v~~ 277 (279)
|++++.|++|++||+++++ .......|...|.++..
T Consensus 165 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 204 (318)
T 4ggc_A 165 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 204 (318)
T ss_dssp EEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEE
T ss_pred EEEEecCcceeEEECCCCcccccceeeecccCCceEEEEe
Confidence 9999999999999998764 34555567777766543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-18 Score=156.63 Aligned_cols=147 Identities=15% Similarity=0.128 Sum_probs=122.9
Q ss_pred ceEeeeeecCCCCceeeCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCc---ceEEEEECCC
Q 023642 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPD 180 (279)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~sp~ 180 (279)
.+.+|+ .......+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+.. +..|.. .|.+++|+|+
T Consensus 143 ~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~---~~~~~~~~~~v~~~~~~~~ 217 (615)
T 1pgu_A 143 VFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS---DRTHHKQGSFVRDVEFSPD 217 (615)
T ss_dssp EEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE---ECSSSCTTCCEEEEEECST
T ss_pred EEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee---ecccCCCCceEEEEEECCC
Confidence 555555 3334455789999999999999998 899999999999999998876654 457887 8999999999
Q ss_pred -CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 181 -QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 181 -~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
+++|++++.|+.|++||+.+++........ ..+|...|.+++|+ ++++|++++.|+.|++||++++
T Consensus 218 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 218 SGEFVITVGSDRKISCFDGKSGEFLKYIEDD------------QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS 284 (615)
T ss_dssp TCCEEEEEETTCCEEEEETTTCCEEEECCBT------------TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT
T ss_pred CCCEEEEEeCCCeEEEEECCCCCEeEEeccc------------ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC
Confidence 999999999999999999988764432000 00166699999999 9999999999999999999999
Q ss_pred eEEEEEeCCC
Q 023642 260 KLSLRILAHT 269 (279)
Q Consensus 260 ~~~~~~~~h~ 269 (279)
+++..+..+.
T Consensus 285 ~~~~~~~~~~ 294 (615)
T 1pgu_A 285 KCVQKWTLDK 294 (615)
T ss_dssp EEEEEEECCT
T ss_pred cEEEEEcCCC
Confidence 9999999873
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-19 Score=149.08 Aligned_cols=159 Identities=11% Similarity=0.086 Sum_probs=124.3
Q ss_pred ccceEeeeeecCCCCce-eeCCCCCeEEEEECCC---CCEEEEEeCCCcEEEEEcCCCe-EEeeeeeccCCCcceEEEE-
Q 023642 103 DCCHMLSRYLPVNGPWP-VDQTTSRAYVSQFSAD---GSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTS- 176 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~-l~~h~~~V~~~~~spd---~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~- 176 (279)
|+.+.+|++........ ..+|...|.+++|+|+ +.+|++|+.|+.|++||+.++. .... +..|...|.+++
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~ 119 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS---VKGHKEIINAIDG 119 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE---ECCCSSCEEEEEE
T ss_pred CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE---EEecccceEEEee
Confidence 78899999876554333 3489999999999998 6999999999999999999876 4333 568899999995
Q ss_pred -----ECCCCCEEEEEeCCCeEEEEECCCCc-eeeeeccccccceeEEeeCCCCCccccEEEEE----EecCCCEEEEec
Q 023642 177 -----LSPDQRHLVYASMSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLK----FSTDGRELVAGS 246 (279)
Q Consensus 177 -----~sp~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~sp~g~~l~t~s 246 (279)
|+|++++|++++.|+.|++||+.++. ....... +.. .+...+.+++ |+|++++|++++
T Consensus 120 ~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-----------~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~ 187 (357)
T 3i2n_A 120 IGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP-----------VQG-ENKRDCWTVAFGNAYNQEERVVCAGY 187 (357)
T ss_dssp ESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC-----------CTT-SCCCCEEEEEEECCCC-CCCEEEEEE
T ss_pred ccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc-----------cCC-CCCCceEEEEEEeccCCCCCEEEEEc
Confidence 57899999999999999999999876 2221111 000 0233788888 788999999999
Q ss_pred CCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 247 SDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 247 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
.|+.|++||+++++.... ..|...|.++..
T Consensus 188 ~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~ 217 (357)
T 3i2n_A 188 DNGDIKLFDLRNMALRWE-TNIKNGVCSLEF 217 (357)
T ss_dssp TTSEEEEEETTTTEEEEE-EECSSCEEEEEE
T ss_pred cCCeEEEEECccCceeee-cCCCCceEEEEc
Confidence 999999999999987544 568888888765
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-18 Score=151.06 Aligned_cols=167 Identities=20% Similarity=0.254 Sum_probs=115.8
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
++.|+.+.+|++........+.+|...|.+++|+ +++|++|+.|+.|++||+.+++.... +.+|...|.+++|+
T Consensus 135 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~- 208 (445)
T 2ovr_B 135 GSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHT---LYGHTSTVRCMHLH- 208 (445)
T ss_dssp EETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEEE-
T ss_pred EECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEE---ECCCCCcEEEEEec-
Confidence 5678899999987776667789999999999997 57999999999999999999977654 46888899999995
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeecc-ccccceeEE------eeCCC-----------------CCccccEEEEEE
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANV-TEIHDGLDF------SAADD-----------------GGYSFGIFSLKF 235 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~------~~~~~-----------------~~~~~~v~~~~~ 235 (279)
+..+++++.|+.|++||+.+++....... ......+.+ .+..+ .+|...|.++.|
T Consensus 209 -~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 287 (445)
T 2ovr_B 209 -EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 287 (445)
T ss_dssp -TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE
T ss_pred -CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE
Confidence 57899999999999999998876433221 000000011 00000 335555555555
Q ss_pred ecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 236 STDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 236 sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
++.++++++.|+.|++||+++++++..+.+|...+.++
T Consensus 288 --~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~ 325 (445)
T 2ovr_B 288 --DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 325 (445)
T ss_dssp --CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEE
T ss_pred --CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEE
Confidence 55555555555555555555555555555555555443
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=153.57 Aligned_cols=178 Identities=10% Similarity=-0.002 Sum_probs=120.0
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeEEeee----------------
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKD---------------- 162 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~-~l~s~~~d~~i~iwd~~~~~~~~~~---------------- 162 (279)
.+.|+++++|++........+.+|...|.+++|+|++. +|++|+.|++|++||+.+++.....
T Consensus 162 ~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~ 241 (393)
T 4gq1_A 162 VGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT 241 (393)
T ss_dssp EETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES
T ss_pred EECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc
Confidence 46799999999987766677889999999999999874 7999999999999999887443211
Q ss_pred ------eeccCCCcceEEEEEC-CCCCEEEEEeCCCeEEEEECCCCceeeeeccc-cccceeEEeeCCC--CCccccEEE
Q 023642 163 ------ILAKSLRWTVTDTSLS-PDQRHLVYASMSPIVHIVDVGSGTMESLANVT-EIHDGLDFSAADD--GGYSFGIFS 232 (279)
Q Consensus 163 ------~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~v~~ 232 (279)
....+|...+.++.|+ ||++.|++++.|+++++||+..+......... .......+.+... ..+...+ .
T Consensus 242 ~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 320 (393)
T 4gq1_A 242 LPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL-G 320 (393)
T ss_dssp GGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS-C
T ss_pred ccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce-e
Confidence 0123677788999986 79999999999999999999876642211100 0000000000000 0011122 3
Q ss_pred EEEec--CCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEee
Q 023642 233 LKFST--DGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 233 ~~~sp--~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
..|+| ++.++++|+.|++|++||+.+++++..+.+|..+|+++.+.
T Consensus 321 ~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafs 368 (393)
T 4gq1_A 321 ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWH 368 (393)
T ss_dssp CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEEC
T ss_pred EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEc
Confidence 34444 34467788899999999999999999999999999998753
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-18 Score=146.58 Aligned_cols=147 Identities=16% Similarity=0.111 Sum_probs=107.4
Q ss_pred CCCCeeeccccceEeeeeecC-CCCceeeCCCCCeEEEEECCCCCEEEE--EeCCCcEEEEEcCCCeEE-----------
Q 023642 94 SGRGRFSAADCCHMLSRYLPV-NGPWPVDQTTSRAYVSQFSADGSLFVA--GFQASQIRIYDVERGWKI----------- 159 (279)
Q Consensus 94 ~~~~~~~~~d~~~~~~~~~~~-~~~~~l~~h~~~V~~~~~spd~~~l~s--~~~d~~i~iwd~~~~~~~----------- 159 (279)
++...+...++.+.+|++... .....+.. +...++++| .+++. |+.||.|++||+.++...
T Consensus 109 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~ 183 (355)
T 3vu4_A 109 SREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKA 183 (355)
T ss_dssp CSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC---------------
T ss_pred cCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccc
Confidence 344444556677777776654 33333333 455566666 56655 588999999999876410
Q ss_pred -ee-eeeccCCCcceEEEEECCCCCEEEEEeCCCe-EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEe
Q 023642 160 -QK-DILAKSLRWTVTDTSLSPDQRHLVYASMSPI-VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (279)
Q Consensus 160 -~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 236 (279)
.. ...+.+|...|.+++|+|+|++|++++.|++ |++||+++++....... + .|...|.+++|+
T Consensus 184 ~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~----------g----~h~~~v~~~~~s 249 (355)
T 3vu4_A 184 ILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRR----------G----LDRADVVDMKWS 249 (355)
T ss_dssp ---CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEEC----------T----TCCSCEEEEEEC
T ss_pred cCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc----------C----CCCCcEEEEEEC
Confidence 00 2345789999999999999999999999998 99999999886532210 1 155699999999
Q ss_pred cCCCEEEEecCCCeEEEEECCCC
Q 023642 237 TDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 237 p~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
|+|++|++++.|++|++||++.+
T Consensus 250 ~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 250 TDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp TTSCEEEEEETTCEEEEEESSCC
T ss_pred CCCCEEEEEECCCEEEEEEccCC
Confidence 99999999999999999999764
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.8e-18 Score=147.25 Aligned_cols=166 Identities=16% Similarity=0.150 Sum_probs=128.1
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.|+.+.+|++........+.+|...|.+++|+ +..+++|+.|+.|++||+.+++.+.. +..|...|.+++|
T Consensus 175 ~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~---~~~~~~~v~~~~~-- 247 (445)
T 2ovr_B 175 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHV---LMGHVAAVRCVQY-- 247 (445)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEE---EECCSSCEEEEEE--
T ss_pred EeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEE---EcCCcccEEEEEE--
Confidence 4678899999987766666788999999999995 57899999999999999999877654 4578889999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeec-cccccceeEE------eeCCC-----------------CCccccEEEEEE
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLAN-VTEIHDGLDF------SAADD-----------------GGYSFGIFSLKF 235 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~------~~~~~-----------------~~~~~~v~~~~~ 235 (279)
++.++++++.|+.|++||+++++...... .......+.+ .+..+ .+|...+.++.
T Consensus 248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~- 326 (445)
T 2ovr_B 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME- 326 (445)
T ss_dssp CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE-
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEE-
Confidence 78899999999999999998877543322 1111111111 11111 45777776654
Q ss_pred ecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeE
Q 023642 236 STDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIAL 274 (279)
Q Consensus 236 sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (279)
+++.+|++++.|+.|++||+++++++..+.++...-..
T Consensus 327 -~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 364 (445)
T 2ovr_B 327 -LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 364 (445)
T ss_dssp -EETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSC
T ss_pred -EeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCC
Confidence 59999999999999999999999999999987765433
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-16 Score=135.78 Aligned_cols=154 Identities=15% Similarity=0.140 Sum_probs=119.0
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEEC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (279)
.+.++.+.+|++........+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++..... ..+ ..+.+++|+
T Consensus 8 ~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~---~~~-~~v~~~~~s 82 (391)
T 1l0q_A 8 NSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV---PAG-SSPQGVAVS 82 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE---ECS-SSEEEEEEC
T ss_pred cCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE---ECC-CCccceEEC
Confidence 3467788888876554444566664 58999999999987 67779999999999999776542 222 279999999
Q ss_pred CCCCEEEEE-eCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEE-EEecCCCeEEEEEC
Q 023642 179 PDQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDL 256 (279)
Q Consensus 179 p~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~t~s~d~~i~vwd~ 256 (279)
|++++|+.+ +.++.|++||+.+++...... +...+.+++|+|++++| ++++.++.|++||+
T Consensus 83 pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-----------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 145 (391)
T 1l0q_A 83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-----------------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINT 145 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEE-----------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CCCCEEEEEECCCCEEEEEECCCCeEEEEEe-----------------CCCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 999988654 467999999999987644322 12268999999999977 68888999999999
Q ss_pred CCCeEEEEEeCCCcceeEEE
Q 023642 257 EANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 257 ~~~~~~~~~~~h~~~v~~v~ 276 (279)
.+++.+..+..|.. +.++.
T Consensus 146 ~~~~~~~~~~~~~~-~~~~~ 164 (391)
T 1l0q_A 146 VTKAVINTVSVGRS-PKGIA 164 (391)
T ss_dssp TTTEEEEEEECCSS-EEEEE
T ss_pred CCCcEEEEEecCCC-cceEE
Confidence 99999999887644 34443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-16 Score=136.98 Aligned_cols=150 Identities=17% Similarity=0.125 Sum_probs=116.2
Q ss_pred cceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCC---cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC
Q 023642 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQAS---QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (279)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 180 (279)
..+.+|+.. ......+.+|...|.+++|+|||++|++++.++ .|++||+.+++... +..|...+.+++|+||
T Consensus 159 ~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~----l~~~~~~~~~~~~spd 233 (415)
T 2hqs_A 159 YELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ----VASFPRHNGAPAFSPD 233 (415)
T ss_dssp EEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE----EECCSSCEEEEEECTT
T ss_pred ceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE----eecCCCcccCEEEcCC
Confidence 577788764 445677889999999999999999999999875 99999999986543 3466778999999999
Q ss_pred CCEEE-EEeCCC--eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CC--eEEEE
Q 023642 181 QRHLV-YASMSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DD--CIYVY 254 (279)
Q Consensus 181 ~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~--~i~vw 254 (279)
|++|+ +++.++ .|++||+.+++...+.. |...+.+++|+|||++|++++. ++ .|++|
T Consensus 234 g~~la~~~~~~g~~~i~~~d~~~~~~~~l~~-----------------~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~ 296 (415)
T 2hqs_A 234 GSKLAFALSKTGSLNLYVMDLASGQIRQVTD-----------------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 296 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCEEECCC-----------------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCEEEEEEecCCCceEEEEECCCCCEEeCcC-----------------CCCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence 99887 566555 49999999887643221 4457999999999999988775 44 78888
Q ss_pred ECCCCeEEEEEeCCCcceeEEE
Q 023642 255 DLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 255 d~~~~~~~~~~~~h~~~v~~v~ 276 (279)
|+.+++. ..+..|...+.++.
T Consensus 297 d~~~~~~-~~l~~~~~~~~~~~ 317 (415)
T 2hqs_A 297 NINGGAP-QRITWEGSQNQDAD 317 (415)
T ss_dssp ETTSSCC-EECCCSSSEEEEEE
T ss_pred ECCCCCE-EEEecCCCcccCeE
Confidence 9988764 44555655665554
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.6e-16 Score=132.47 Aligned_cols=178 Identities=15% Similarity=0.076 Sum_probs=127.6
Q ss_pred ccCCCCee----eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEE-EeCCCcEEEEEcCCCeEEeeeeecc
Q 023642 92 NYSGRGRF----SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVA-GFQASQIRIYDVERGWKIQKDILAK 166 (279)
Q Consensus 92 ~~~~~~~~----~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~ 166 (279)
.+++++.+ .+.++.+.+|++...+....+..+. .+.+++|+|++++|+. ++.++.|++||+.+++.+...
T Consensus 38 ~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~---- 112 (391)
T 1l0q_A 38 VISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV---- 112 (391)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE----
T ss_pred EECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE----
Confidence 45666652 2367888888875544444455444 9999999999998855 556799999999998766542
Q ss_pred CCCcceEEEEECCCCCEE-EEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC----------------------
Q 023642 167 SLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD---------------------- 223 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 223 (279)
.+...+.+++|+|++++| ++++.++.|++||+.+++.............+.|.+++.
T Consensus 113 ~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~ 192 (391)
T 1l0q_A 113 KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV 192 (391)
T ss_dssp ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE
Confidence 233468999999999987 677889999999999887654433222222222322221
Q ss_pred ---CCccccEEEEEEecCCCEEEEec---CCCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 224 ---GGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 224 ---~~~~~~v~~~~~sp~g~~l~t~s---~d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
-.+...+.+++|+|++++|++++ .++.|++||+.+++.+..+..|.. +.++
T Consensus 193 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 249 (391)
T 1l0q_A 193 IDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGI 249 (391)
T ss_dssp EEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEE
T ss_pred EEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEE
Confidence 11345678999999999988887 689999999999999999987754 4444
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-16 Score=134.23 Aligned_cols=180 Identities=16% Similarity=0.165 Sum_probs=129.0
Q ss_pred ccCCCCee---eccc---cceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEE-EEeCCC--cEEEEEcCCCeEEeee
Q 023642 92 NYSGRGRF---SAAD---CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFV-AGFQAS--QIRIYDVERGWKIQKD 162 (279)
Q Consensus 92 ~~~~~~~~---~~~d---~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~-s~~~d~--~i~iwd~~~~~~~~~~ 162 (279)
.++++|+. .+.+ ..+.+|++.... ...+..|...+.+++|+|||++|+ +++.|+ .|++||+.+++..
T Consensus 185 ~~Spdg~~la~~s~~~~~~~i~~~d~~tg~-~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~--- 260 (415)
T 2hqs_A 185 AWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR--- 260 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCC-EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---
T ss_pred EEcCCCCEEEEEEecCCCcEEEEEECCCCc-EEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE---
Confidence 46788764 2333 367777765433 345788899999999999999887 666665 4999999988542
Q ss_pred eeccCCCcceEEEEECCCCCEEEEEeC-CC--eEEEEECCCCceeeeeccccccceeEEeeCCC----------------
Q 023642 163 ILAKSLRWTVTDTSLSPDQRHLVYASM-SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADD---------------- 223 (279)
Q Consensus 163 ~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 223 (279)
.+..|...+.+++|+|||++|++++. ++ .|++||+.+++...+...........|++++.
T Consensus 261 -~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~ 339 (415)
T 2hqs_A 261 -QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAK 339 (415)
T ss_dssp -ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEE
T ss_pred -eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEE
Confidence 24567778999999999999988876 44 78888998876543322111111222222221
Q ss_pred -----------CCccccEEEEEEecCCCEEEEecCCC---eEEEEECCCCeEEEEEeCCCcceeEEEee
Q 023642 224 -----------GGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 224 -----------~~~~~~v~~~~~sp~g~~l~t~s~d~---~i~vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
..+ ..+.+++|+|+|++|++++.++ .|++||+. +.....+.+|.+.|+++.++
T Consensus 340 ~d~~~~~~~~l~~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~ 406 (415)
T 2hqs_A 340 QDLATGGVQVLSST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWS 406 (415)
T ss_dssp EETTTCCEEECCCS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEEC
T ss_pred EECCCCCEEEecCC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccc
Confidence 112 2688999999999999888766 79999987 66778899999999988764
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-16 Score=136.69 Aligned_cols=164 Identities=13% Similarity=0.041 Sum_probs=124.7
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCc-----eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPW-----PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI 163 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~-----~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 163 (279)
.+++.+.+ .+.++.+.+|+........ .+.+|...|.+++|+|+++++++++.|+.|++||+.+++....
T Consensus 129 ~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~-- 206 (433)
T 3bws_A 129 RFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKAT-- 206 (433)
T ss_dssp EESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEE--
T ss_pred EEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEE--
Confidence 34554443 2345678888865443333 3458999999999999999999999999999999998876654
Q ss_pred eccCCCcceEEEEECCCCCEEEEE-eCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEE
Q 023642 164 LAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (279)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 242 (279)
...|...+.+++|+|++++++++ +.|+.|++||+++++...... +...+.+++|+|+|++|
T Consensus 207 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~l 268 (433)
T 3bws_A 207 -VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD-----------------KIGLPRGLLLSKDGKEL 268 (433)
T ss_dssp -EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC-----------------CCSEEEEEEECTTSSEE
T ss_pred -EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec-----------------CCCCceEEEEcCCCCEE
Confidence 33677789999999999988554 479999999999887643221 11258999999999999
Q ss_pred EEec--------CCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 243 VAGS--------SDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 243 ~t~s--------~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
++++ .|+.|++||+.+++.+..+. |...+.++.
T Consensus 269 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~ 309 (433)
T 3bws_A 269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIV 309 (433)
T ss_dssp EEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEE
T ss_pred EEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEE
Confidence 9887 48899999999998877663 444555443
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-15 Score=131.96 Aligned_cols=163 Identities=13% Similarity=0.043 Sum_probs=125.9
Q ss_pred cCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeEEeeeeeccCC
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSL 168 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (279)
+++++.+ .+.++.+.+|++........+..|...+.+++|+|++++++ +++.|+.|++||+.+++.+... .+
T Consensus 177 ~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~----~~ 252 (433)
T 3bws_A 177 IPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT----DK 252 (433)
T ss_dssp EGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC----CC
T ss_pred EcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe----cC
Confidence 3445544 34567888888766555566788999999999999999885 4558999999999998765542 23
Q ss_pred CcceEEEEECCCCCEEEEEe--------CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC
Q 023642 169 RWTVTDTSLSPDQRHLVYAS--------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240 (279)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 240 (279)
...+.+++|+|++++|++++ .|+.|++||+.+++...... |...+.+++|+|+++
T Consensus 253 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~ 315 (433)
T 3bws_A 253 IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-----------------PPGNKRHIVSGNTEN 315 (433)
T ss_dssp CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-----------------EEECEEEEEECSSTT
T ss_pred CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-----------------CCCCcceEEECCCCC
Confidence 34599999999999999888 58899999999887643321 233688999999997
Q ss_pred EE-EEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 241 EL-VAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 241 ~l-~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
.+ ++++.++.|++||+.+++.+..+. +...+.++..
T Consensus 316 ~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~ 352 (433)
T 3bws_A 316 KIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIAL 352 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEE
Confidence 55 566889999999999999988887 5566666543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-16 Score=136.00 Aligned_cols=155 Identities=8% Similarity=-0.014 Sum_probs=113.1
Q ss_pred ccCCCCeee-------ccccceEeeeeecC-----CC------CceeeCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEE
Q 023642 92 NYSGRGRFS-------AADCCHMLSRYLPV-----NG------PWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYD 152 (279)
Q Consensus 92 ~~~~~~~~~-------~~d~~~~~~~~~~~-----~~------~~~l~~h~~~V~~~~~spd-~~~l~s~~~d~~i~iwd 152 (279)
.+++++.+. +.|+.+.+|++... .. ...+.+|...|.+++|+|+ +.+|++++.|++|++||
T Consensus 99 ~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD 178 (434)
T 2oit_A 99 ALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQ 178 (434)
T ss_dssp EECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred EEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEE
Confidence 456666542 24788899987653 11 1335679999999999997 89999999999999999
Q ss_pred cCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEE
Q 023642 153 VERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS 232 (279)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 232 (279)
+.++..... ..+|...|.+++|+|+|++|++++.|+.|++||++ ++.......... ....|...|.+
T Consensus 179 ~~~~~~~~~---~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~---------~~~~~~~~v~~ 245 (434)
T 2oit_A 179 VTETVKVCA---TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPF---------YESDHPVRVLD 245 (434)
T ss_dssp ESSSEEEEE---EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTT---------CCTTSCEEEEE
T ss_pred cCCCcceee---ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcc---------cCCCCceeEEE
Confidence 998855432 34677889999999999999999999999999998 443221111000 00114458999
Q ss_pred EEEecCCCEEEEec-CCC------eEEEEECCCC
Q 023642 233 LKFSTDGRELVAGS-SDD------CIYVYDLEAN 259 (279)
Q Consensus 233 ~~~sp~g~~l~t~s-~d~------~i~vwd~~~~ 259 (279)
++|++++.++++.+ .++ .+++|+++..
T Consensus 246 v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 246 VLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 99999988876432 332 4999999864
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=141.11 Aligned_cols=174 Identities=11% Similarity=0.103 Sum_probs=120.2
Q ss_pred CccCCCCee--eccccceEeeeeecCCCCceeeCCCC---CeEEEEECCCCCEEEEEeCC---------CcEEEEEcCCC
Q 023642 91 GNYSGRGRF--SAADCCHMLSRYLPVNGPWPVDQTTS---RAYVSQFSADGSLFVAGFQA---------SQIRIYDVERG 156 (279)
Q Consensus 91 ~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~l~~h~~---~V~~~~~spd~~~l~s~~~d---------~~i~iwd~~~~ 156 (279)
..++++|.+ .+.++.+.+|+.........+..|.. .|.+++|||||++|++++.+ +.|.+||+.++
T Consensus 22 ~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 101 (723)
T 1xfd_A 22 AKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (723)
T ss_dssp CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred cEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCC
Confidence 345666654 34577888998877766666666665 49999999999999999875 77889999988
Q ss_pred eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC----CCccccEEE
Q 023642 157 WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD----GGYSFGIFS 232 (279)
Q Consensus 157 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~ 232 (279)
+. ..+.....|...+..++|||||+.|++++. +.|++||+.+++...+.... .....+.+..+ ..-...+.+
T Consensus 102 ~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~--~~~~~~~g~~~~v~~ee~~~~~~~ 177 (723)
T 1xfd_A 102 DP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTG--KEGVIYNGLSDWLYEEEILKTHIA 177 (723)
T ss_dssp CC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCC--BTTTEEEEECCHHHHHTTSSSSEE
T ss_pred ce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCC--CCCceECcccceeEEEEeccCcce
Confidence 65 222223345555889999999999999886 79999999988765433211 00001111100 000012378
Q ss_pred EEEecCCCEEEEecCCC----------------------------------eEEEEECCCCeEEEEEeCC
Q 023642 233 LKFSTDGRELVAGSSDD----------------------------------CIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 233 ~~~sp~g~~l~t~s~d~----------------------------------~i~vwd~~~~~~~~~~~~h 268 (279)
++|||||++|++++.|+ .|++||+.+++....+..+
T Consensus 178 ~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~ 247 (723)
T 1xfd_A 178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP 247 (723)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC
T ss_pred EEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC
Confidence 99999999999887543 7999999988766666654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.4e-14 Score=125.81 Aligned_cols=170 Identities=13% Similarity=0.069 Sum_probs=119.5
Q ss_pred cCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc--CCCeEEeeeeeccC
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDV--ERGWKIQKDILAKS 167 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~--~~~~~~~~~~~~~~ 167 (279)
+++.+.+ ...++.+.+|+....+....+..+.. +..++|+|||++|++++.|++|.+||+ .+++.+..+.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~---- 219 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK---- 219 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE----
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe----
Confidence 4444443 34567788887655544455653333 899999999999999999999999999 7777665432
Q ss_pred CCcceEEEEECC----CCCEEEEEe-CCCeEEEEECCCCceeeeecccc------------ccceeEEeeCCC-------
Q 023642 168 LRWTVTDTSLSP----DQRHLVYAS-MSPIVHIVDVGSGTMESLANVTE------------IHDGLDFSAADD------- 223 (279)
Q Consensus 168 ~~~~v~~~~~sp----~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~------------~~~~~~~~~~~~------- 223 (279)
+...+..++|+| ||++|++++ .+++|.+||..+++......... ....+.+++.+.
T Consensus 220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 334589999999 999999888 58999999999887654433210 011122222111
Q ss_pred -----------C---------CccccEEEEEEecCCCEEEEe-cCCCeEEEEECCCCeEEEEEeC
Q 023642 224 -----------G---------GYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 224 -----------~---------~~~~~v~~~~~sp~g~~l~t~-s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
. .+...+..+.|+|+|++|+++ ..+++|.+||+.+++++.++..
T Consensus 300 ~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~ 364 (543)
T 1nir_A 300 ETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV 364 (543)
T ss_dssp TTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred CCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc
Confidence 0 012245578999999987655 4688999999999999999885
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-13 Score=113.05 Aligned_cols=154 Identities=12% Similarity=0.096 Sum_probs=109.4
Q ss_pred ccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-CeEEeeeeeccCC-CcceEEEEEC
Q 023642 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSL-RWTVTDTSLS 178 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~-~~~v~~~~~s 178 (279)
+.+..+.+|++.... ...+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.... ...+ ...+.+++|+
T Consensus 19 ~~~~~i~~~d~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRK-MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV---DTGFATICNNDHGIS 93 (297)
T ss_dssp CCCEEEEEEETTTTE-EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC---CCTTCCCBCSCCEEC
T ss_pred CcceeEEEEeCCCCc-eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe---ccccccccccceEEC
Confidence 356677777764332 334677899999999999999999987 78999999998 755432 2233 3678999999
Q ss_pred CCCCEEEEEeC--C--CeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEE-EecCCCeEEE
Q 023642 179 PDQRHLVYASM--S--PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYV 253 (279)
Q Consensus 179 p~~~~l~~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-t~s~d~~i~v 253 (279)
|++++|++++. + ..|.+|+..++....+. +...+..++|+|++++|+ +++.++.+.+
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------~~~~~~~~~~spdg~~l~~~~~~~~~~~l 155 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGTPRLMT------------------KNLPSYWHGWSPDGKSFTYCGIRDQVFDI 155 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCCCEECC------------------SSSSEEEEEECTTSSEEEEEEEETTEEEE
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCceEEee------------------cCCCccceEECCCCCEEEEEECCCCceEE
Confidence 99999999983 3 44555565655532221 112478899999999887 6778898899
Q ss_pred EECCC-CeEEEEEeCCCcceeEEEe
Q 023642 254 YDLEA-NKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 254 wd~~~-~~~~~~~~~h~~~v~~v~~ 277 (279)
|++.. +.....+..|...+.++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (297)
T 2ojh_A 156 YSMDIDSGVETRLTHGEGRNDGPDY 180 (297)
T ss_dssp EEEETTTCCEEECCCSSSCEEEEEE
T ss_pred EEEECCCCcceEcccCCCccccceE
Confidence 98532 3344566667777776654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-13 Score=111.67 Aligned_cols=166 Identities=17% Similarity=0.185 Sum_probs=112.0
Q ss_pred CccCCCCee---ec--cccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEE-EEeCCCcEEEEEcC--CCeEEeee
Q 023642 91 GNYSGRGRF---SA--ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFV-AGFQASQIRIYDVE--RGWKIQKD 162 (279)
Q Consensus 91 ~~~~~~~~~---~~--~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~-s~~~d~~i~iwd~~--~~~~~~~~ 162 (279)
..+++++.+ .. .+....+|.+...........+...+..++|+||+++|+ +++.++.++||+++ ++.. .
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~-- 166 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-T-- 166 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-E--
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-e--
Confidence 345666654 12 223556666654333333333334599999999999887 78889999999864 4432 2
Q ss_pred eeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEECC-CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC
Q 023642 163 ILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240 (279)
Q Consensus 163 ~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 240 (279)
....+...+.+++|+|++++|+.++ .++.+++|++. .+....... .|...+..++|+|+|+
T Consensus 167 -~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~----------------~~~~~~~~~~~s~dg~ 229 (297)
T 2ojh_A 167 -RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT----------------DSAYGDWFPHPSPSGD 229 (297)
T ss_dssp -ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC----------------CCSEEEEEEEECTTSS
T ss_pred -EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe----------------cCCcccCCeEECCCCC
Confidence 2346667899999999999888766 58889999875 222211111 1334788999999999
Q ss_pred EEEEecCC-----------CeEEEEECCCCeE--EEEEeCCCcceeEEE
Q 023642 241 ELVAGSSD-----------DCIYVYDLEANKL--SLRILAHTVNIALWI 276 (279)
Q Consensus 241 ~l~t~s~d-----------~~i~vwd~~~~~~--~~~~~~h~~~v~~v~ 276 (279)
+|++++.+ ..|++||+.+++. +..+.+|...+.++.
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 278 (297)
T 2ojh_A 230 KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPN 278 (297)
T ss_dssp EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCC
T ss_pred EEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccce
Confidence 99887765 5699999988754 455557777666543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.2e-14 Score=130.86 Aligned_cols=141 Identities=14% Similarity=0.090 Sum_probs=98.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCC---eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERG---WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
.|.+++|||||++|++++. +.|++||+.++ .... +..+...+..++|+|||++|++++. +.|++||+.+++
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~----l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~ 183 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ----LTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGR 183 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCB----CCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEE----cccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCC
Confidence 3789999999999999987 89999999987 4322 3466678999999999999999874 589999999887
Q ss_pred eeeeeccccccceeEEeeCCC---CCccccEEEEEEecCCCEEEEecCCC------------------------------
Q 023642 203 MESLANVTEIHDGLDFSAADD---GGYSFGIFSLKFSTDGRELVAGSSDD------------------------------ 249 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~g~~l~t~s~d~------------------------------ 249 (279)
...+...... . .+.+..+ ......+..++|||||++|++++.|+
T Consensus 184 ~~~~~~~~~~--~-~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 260 (741)
T 2ecf_A 184 QMQLTADGST--T-IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN 260 (741)
T ss_dssp EEECCCCCCS--S-EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred EEEeccCCcc--c-eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence 6543221100 0 0000000 00001247799999999999887665
Q ss_pred ---eEEEEECCC-CeEEEEEe--CCCcceeEE
Q 023642 250 ---CIYVYDLEA-NKLSLRIL--AHTVNIALW 275 (279)
Q Consensus 250 ---~i~vwd~~~-~~~~~~~~--~h~~~v~~v 275 (279)
.|++||+.+ ++...... .|...+.++
T Consensus 261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 292 (741)
T 2ecf_A 261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARV 292 (741)
T ss_dssp CEEEEEEECSSTTCCCEEECCCSCSSEEEEEE
T ss_pred CeeEEEEEECCCCCceEEecCCCCcceEEEEE
Confidence 899999998 77654433 355555444
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.3e-15 Score=137.09 Aligned_cols=150 Identities=15% Similarity=0.103 Sum_probs=98.0
Q ss_pred ccCCCCee--eccccceEeeeeecCCCCceeeCCCC---CeEEEEECCCCCEEEEEeC---------CCcEEEEEcCCCe
Q 023642 92 NYSGRGRF--SAADCCHMLSRYLPVNGPWPVDQTTS---RAYVSQFSADGSLFVAGFQ---------ASQIRIYDVERGW 157 (279)
Q Consensus 92 ~~~~~~~~--~~~d~~~~~~~~~~~~~~~~l~~h~~---~V~~~~~spd~~~l~s~~~---------d~~i~iwd~~~~~ 157 (279)
.+++++.+ .+.++.+.+|+.........+..|.. .+.+++|||||++|++++. ++.|++||+.+++
T Consensus 22 ~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~ 101 (719)
T 1z68_A 22 NWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGE 101 (719)
T ss_dssp EESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred EECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCc
Confidence 34555554 33567788887765544434444433 4899999999999998876 7899999999986
Q ss_pred EEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCC----ccccEEEE
Q 023642 158 KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG----YSFGIFSL 233 (279)
Q Consensus 158 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~ 233 (279)
.+.. ......+..++|||||+.|+++. ++.|++||+.+++...+... ......+.++.+-- ......++
T Consensus 102 ~~~~----~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~--~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 102 FVRG----NELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFN--GRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp ECCS----SCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCC--CBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred cccc----eecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecC--CCcCCeEcccccceeeeecccCcccE
Confidence 5211 11123588999999999999886 67999999998876433211 11111111111100 00112589
Q ss_pred EEecCCCEEEEecCC
Q 023642 234 KFSTDGRELVAGSSD 248 (279)
Q Consensus 234 ~~sp~g~~l~t~s~d 248 (279)
+|||||++|++++.|
T Consensus 175 ~wSPDG~~la~~~~d 189 (719)
T 1z68_A 175 WWSPNGKFLAYAEFN 189 (719)
T ss_dssp EECTTSSEEEEEEEE
T ss_pred EECCCCCEEEEEEEC
Confidence 999999999988754
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.55 E-value=9.6e-13 Score=111.34 Aligned_cols=172 Identities=14% Similarity=0.054 Sum_probs=113.6
Q ss_pred CccCCCCee--e--ccccceEeeeeecCCC----C---------ceeeCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEE
Q 023642 91 GNYSGRGRF--S--AADCCHMLSRYLPVNG----P---------WPVDQTTSRAYVSQFSADGSLFVAGF-QASQIRIYD 152 (279)
Q Consensus 91 ~~~~~~~~~--~--~~d~~~~~~~~~~~~~----~---------~~l~~h~~~V~~~~~spd~~~l~s~~-~d~~i~iwd 152 (279)
..++++|++ . ..++.+.+|++..... . .....+......++|+|||+++++++ .++.|.+||
T Consensus 160 ~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 239 (361)
T 3scy_A 160 VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFR 239 (361)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEE
Confidence 457788763 2 2356777887765443 1 11234456688999999999887776 689999999
Q ss_pred cCCCeEE--eeeeeccCCCcceEEEEECCCCCEEEEEeCC--CeEEEEECC--CCceeeeeccccccceeEEeeCCCCCc
Q 023642 153 VERGWKI--QKDILAKSLRWTVTDTSLSPDQRHLVYASMS--PIVHIVDVG--SGTMESLANVTEIHDGLDFSAADDGGY 226 (279)
Q Consensus 153 ~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (279)
+.++... ........+......++|+|||++|+++..+ +.|.+|++. ++........ .. +
T Consensus 240 ~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~---------~~-g---- 305 (361)
T 3scy_A 240 YADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ---------LT-G---- 305 (361)
T ss_dssp EETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE---------EC-S----
T ss_pred ecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe---------cC-C----
Confidence 9877432 2222223333457899999999998776654 899999985 4553322211 11 1
Q ss_pred cccEEEEEEecCCCEEEEec-CCCeEEEE--ECCCCeEEEEEe-CCCcceeEEEe
Q 023642 227 SFGIFSLKFSTDGRELVAGS-SDDCIYVY--DLEANKLSLRIL-AHTVNIALWIT 277 (279)
Q Consensus 227 ~~~v~~~~~sp~g~~l~t~s-~d~~i~vw--d~~~~~~~~~~~-~h~~~v~~v~~ 277 (279)
..+..++|+|||++|++++ .++.|.+| |..+++...... .+...+.|+..
T Consensus 306 -~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 306 -IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp -SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred -CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 1567899999999888877 57889996 555676654432 24455666653
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-13 Score=125.66 Aligned_cols=171 Identities=16% Similarity=0.122 Sum_probs=121.0
Q ss_pred CccCCCCee--eccccceEeeeeec-----CCCCceeeCCCCC--------------eEEEEECCCCCEEEEEe------
Q 023642 91 GNYSGRGRF--SAADCCHMLSRYLP-----VNGPWPVDQTTSR--------------AYVSQFSADGSLFVAGF------ 143 (279)
Q Consensus 91 ~~~~~~~~~--~~~d~~~~~~~~~~-----~~~~~~l~~h~~~--------------V~~~~~spd~~~l~s~~------ 143 (279)
..++++|+. ...+..+.+|++.. .........+... +.+++|||||++|++++
T Consensus 126 ~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~ 205 (706)
T 2z3z_A 126 LDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMV 205 (706)
T ss_dssp CEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTS
T ss_pred CcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCC
Confidence 356787764 34677788888765 3333323333332 48899999999999987
Q ss_pred ---------------------------CCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCC-----
Q 023642 144 ---------------------------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----- 191 (279)
Q Consensus 144 ---------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----- 191 (279)
.+..|++||+.+++.... .....|...+..++|+|||++|++++.++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 284 (706)
T 2z3z_A 206 KPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL-QTGEPKEKFLTNLSWSPDENILYVAEVNRAQNEC 284 (706)
T ss_dssp CCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC-CCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEE
T ss_pred ceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee-ccCCCCceeEeeEEEECCCCEEEEEEeCCCCCee
Confidence 446899999998865432 12235667899999999999999888775
Q ss_pred eEEEEECCCC-ceeeeeccccccceeEEeeCCCCCccccEEEEEEec--CCCEEEEecCCCeEEEEECC-CCeEEEEEeC
Q 023642 192 IVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLE-ANKLSLRILA 267 (279)
Q Consensus 192 ~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~t~s~d~~i~vwd~~-~~~~~~~~~~ 267 (279)
.|++||+.++ ....+... ... .....+..++|+| ||+++++++.|+.+++|++. +++.+..+..
T Consensus 285 ~v~~~d~~~g~~~~~~~~~----------~~~--~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~ 352 (706)
T 2z3z_A 285 KVNAYDAETGRFVRTLFVE----------TDK--HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK 352 (706)
T ss_dssp EEEEEETTTCCEEEEEEEE----------ECS--SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC
T ss_pred EEEEEECCCCceeeEEEEc----------cCC--CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC
Confidence 8999999998 43322110 000 0111245789999 99999999999989999876 6778888888
Q ss_pred CCcceeE
Q 023642 268 HTVNIAL 274 (279)
Q Consensus 268 h~~~v~~ 274 (279)
|...+.+
T Consensus 353 ~~~~v~~ 359 (706)
T 2z3z_A 353 GEWEVTN 359 (706)
T ss_dssp SSSCEEE
T ss_pred CCeEEEe
Confidence 8777765
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-12 Score=107.94 Aligned_cols=174 Identities=13% Similarity=0.137 Sum_probs=110.2
Q ss_pred ccCCCCee---ec-cccceEeeeeec---CCCCceeeCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCC-CeEEeee
Q 023642 92 NYSGRGRF---SA-ADCCHMLSRYLP---VNGPWPVDQTTSRAYVSQFSADGSLFVAGF-QASQIRIYDVER-GWKIQKD 162 (279)
Q Consensus 92 ~~~~~~~~---~~-~d~~~~~~~~~~---~~~~~~l~~h~~~V~~~~~spd~~~l~s~~-~d~~i~iwd~~~-~~~~~~~ 162 (279)
.+++++.+ .+ .++.+.+|++.. ......+ .....+.+++|+|+++++++++ .++.|.+||+.+ ++.....
T Consensus 90 ~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 168 (343)
T 1ri6_A 90 STDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQD 168 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred EEcCCCCEEEEEecCCCeEEEEECCCCccccccccc-cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeec
Confidence 35666653 22 356688888741 1111222 3345689999999999888877 889999999987 5432211
Q ss_pred --eeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCC--CceeeeeccccccceeEEeeCCCCCccccEEEEEEec
Q 023642 163 --ILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST 237 (279)
Q Consensus 163 --~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 237 (279)
.........+..++|+|+++++++++ .++.+.+||+.. +.............+ ......+..++|+|
T Consensus 169 ~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~~~~~~i~~s~ 240 (343)
T 1ri6_A 169 PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN--------FSDTRWAADIHITP 240 (343)
T ss_dssp EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT--------CCSCCCEEEEEECT
T ss_pred ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc--------ccccCCccceEECC
Confidence 11122334688999999999876555 889999999954 433211111100000 00123677899999
Q ss_pred CCCEEE-EecCCCeEEEEECC----CCeEEEEEeCCCcceeEE
Q 023642 238 DGRELV-AGSSDDCIYVYDLE----ANKLSLRILAHTVNIALW 275 (279)
Q Consensus 238 ~g~~l~-t~s~d~~i~vwd~~----~~~~~~~~~~h~~~v~~v 275 (279)
+|++|+ +...++.|.+||+. +.+.+..+..+.. +..+
T Consensus 241 dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~ 282 (343)
T 1ri6_A 241 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGF 282 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCE
T ss_pred CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceE
Confidence 999877 45578999999998 3456666665444 4443
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-13 Score=124.40 Aligned_cols=126 Identities=17% Similarity=0.111 Sum_probs=98.7
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CC-----cEEEEEcCCCeEEeeeeeccCCC----------------------cceEEE
Q 023642 124 TSRAYVSQFSADGSLFVAGFQ-AS-----QIRIYDVERGWKIQKDILAKSLR----------------------WTVTDT 175 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~-d~-----~i~iwd~~~~~~~~~~~~~~~~~----------------------~~v~~~ 175 (279)
...+.+++|||||++|++++. |+ .|++||+.+++..... ....+. ..+.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457899999999999999998 88 8999999998654432 122222 347899
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCC---ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEE
Q 023642 176 SLSPDQRHLVYASMSPIVHIVDVGSG---TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (279)
Q Consensus 176 ~~sp~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~ 252 (279)
+|+|||++|++++. +.|++||+.++ ....+.. |...+..++|||||++|++++ ++.|+
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~-----------------~~~~~~~~~~SPDG~~la~~~-~~~i~ 175 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTH-----------------GEGFATDAKLSPKGGFVSFIR-GRNLW 175 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCC-----------------SSSCEEEEEECTTSSEEEEEE-TTEEE
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEccc-----------------CCcccccccCCCCCCEEEEEe-CCcEE
Confidence 99999999999887 89999999987 4432211 334799999999999999887 46899
Q ss_pred EEECCCCeEEEEEeCCC
Q 023642 253 VYDLEANKLSLRILAHT 269 (279)
Q Consensus 253 vwd~~~~~~~~~~~~h~ 269 (279)
+||+.+++.......+.
T Consensus 176 ~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 176 VIDLASGRQMQLTADGS 192 (741)
T ss_dssp EEETTTTEEEECCCCCC
T ss_pred EEecCCCCEEEeccCCc
Confidence 99999988776555443
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=9.9e-13 Score=109.77 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=101.8
Q ss_pred ccccceEeeeeecCCCC--ceeeCCCCCeEEEEECCCCCEEEEEeCC-CcEEEEEcC--CCeEEeeeeeccCCCcceEEE
Q 023642 101 AADCCHMLSRYLPVNGP--WPVDQTTSRAYVSQFSADGSLFVAGFQA-SQIRIYDVE--RGWKIQKDILAKSLRWTVTDT 175 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~--~~l~~h~~~V~~~~~spd~~~l~s~~~d-~~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~ 175 (279)
+.++.+.+|++...... .....|...+.+++|+|++++|++++.+ +.|.+|+++ ++..... .....+. .+..+
T Consensus 12 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~-~~~~~ 89 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA-AESALPG-SLTHI 89 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-EEEECSS-CCSEE
T ss_pred CCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec-cccccCC-CCcEE
Confidence 45778888887542221 2234577889999999999999888876 899999998 5543211 1122222 68999
Q ss_pred EECCCCCEEEEEeC-CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec-CCCeEEE
Q 023642 176 SLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYV 253 (279)
Q Consensus 176 ~~sp~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s-~d~~i~v 253 (279)
+|+|++++|++++. ++.|.+||+..+........ +. ....+.+++|+|+|+++++++ .++.|++
T Consensus 90 ~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--------~~------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~ 155 (343)
T 1ri6_A 90 STDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV--------VE------GLDGCHSANISPDNRTLWVPALKQDRICL 155 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE--------EC------CCTTBCCCEECTTSSEEEEEEGGGTEEEE
T ss_pred EEcCCCCEEEEEecCCCeEEEEECCCCcccccccc--------cc------CCCCceEEEECCCCCEEEEecCCCCEEEE
Confidence 99999998877664 88999999953332111111 00 112578899999999888776 7899999
Q ss_pred EECCC-CeE
Q 023642 254 YDLEA-NKL 261 (279)
Q Consensus 254 wd~~~-~~~ 261 (279)
||+.+ ++.
T Consensus 156 ~d~~~~~~~ 164 (343)
T 1ri6_A 156 FTVSDDGHL 164 (343)
T ss_dssp EEECTTSCE
T ss_pred EEecCCCce
Confidence 99987 654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-13 Score=130.56 Aligned_cols=162 Identities=16% Similarity=0.100 Sum_probs=121.6
Q ss_pred cC-CCCee--eccccceEeeeeecCCCCceeeCCCC-CeEEEEECCCCCEEEEEeCCCcEE-EEEcCCCeEEeeeeeccC
Q 023642 93 YS-GRGRF--SAADCCHMLSRYLPVNGPWPVDQTTS-RAYVSQFSADGSLFVAGFQASQIR-IYDVERGWKIQKDILAKS 167 (279)
Q Consensus 93 ~~-~~~~~--~~~d~~~~~~~~~~~~~~~~l~~h~~-~V~~~~~spd~~~l~s~~~d~~i~-iwd~~~~~~~~~~~~~~~ 167 (279)
++ ++|.. ...+..+.+|+.... ....+..|.. .+..++|+ ||+.|++++.+..+. +||+.++.... +..
T Consensus 303 ~S~pdG~~la~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~----l~~ 376 (1045)
T 1k32_A 303 FSPLDGDLIAFVSRGQAFIQDVSGT-YVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK----FEE 376 (1045)
T ss_dssp EEECGGGCEEEEETTEEEEECTTSS-BEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE----CCC
T ss_pred ecCCCCCEEEEEEcCEEEEEcCCCC-ceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE----ecC
Confidence 45 66543 222444555544322 2233567777 89999999 999999999888898 99998875432 236
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC
Q 023642 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (279)
Q Consensus 168 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~ 247 (279)
|...+..++|+|||++|++++.++.+++||+.+++...+... |...+.+++|+|||++|++++.
T Consensus 377 ~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~----------------~~~~v~~~~~SpDG~~la~~~~ 440 (1045)
T 1k32_A 377 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS----------------REAMITDFTISDNSRFIAYGFP 440 (1045)
T ss_dssp CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC----------------SSSCCCCEEECTTSCEEEEEEE
T ss_pred CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC----------------CCCCccceEECCCCCeEEEEec
Confidence 667899999999999999999999999999999886543311 4457889999999999988776
Q ss_pred CC----------eEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 248 DD----------CIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 248 d~----------~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
++ .|++||+.+++ +..+..|...+.++..
T Consensus 441 ~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~ 479 (1045)
T 1k32_A 441 LKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAF 479 (1045)
T ss_dssp ECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEE
T ss_pred CccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceE
Confidence 43 89999999887 6777778777666543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-12 Score=107.60 Aligned_cols=151 Identities=10% Similarity=-0.008 Sum_probs=110.3
Q ss_pred ccceEeeeeecCCCCceeeCCCC---------CeEEEEECCCCCEEEEEe--CCCcEEEEEcCCCeEEeeeeeccCCCcc
Q 023642 103 DCCHMLSRYLPVNGPWPVDQTTS---------RAYVSQFSADGSLFVAGF--QASQIRIYDVERGWKIQKDILAKSLRWT 171 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~l~~h~~---------~V~~~~~spd~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 171 (279)
+..+.+|+.........+..+.. .+.+++|+|+++++++++ .++.|.+||+.+++..... ..+...
T Consensus 110 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~~ 186 (353)
T 3vgz_A 110 NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI---QNTGKM 186 (353)
T ss_dssp TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE---CCCCTT
T ss_pred CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe---cCCCCc
Confidence 45666666544433334444332 278999999999887765 4789999999998766542 223445
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CCe
Q 023642 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDC 250 (279)
Q Consensus 172 v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~~ 250 (279)
+..++|+|++++|++++.++.+.+||+.+++........ ..++...+..++|+|+|++++.++. ++.
T Consensus 187 ~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 254 (353)
T 3vgz_A 187 STGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL------------DDGKEHFFINISLDTARQRAFITDSKAAE 254 (353)
T ss_dssp CCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC------------CSSSCCCEEEEEEETTTTEEEEEESSSSE
T ss_pred cceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC------------CCCCCcccceEEECCCCCEEEEEeCCCCE
Confidence 788999999999999999999999999998765432221 0113346888999999997776654 589
Q ss_pred EEEEECCCCeEEEEEeCC
Q 023642 251 IYVYDLEANKLSLRILAH 268 (279)
Q Consensus 251 i~vwd~~~~~~~~~~~~h 268 (279)
|.+||+.+++.+..+...
T Consensus 255 v~~~d~~~~~~~~~~~~~ 272 (353)
T 3vgz_A 255 VLVVDTRNGNILAKVAAP 272 (353)
T ss_dssp EEEEETTTCCEEEEEECS
T ss_pred EEEEECCCCcEEEEEEcC
Confidence 999999999988888753
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-12 Score=107.39 Aligned_cols=164 Identities=10% Similarity=0.008 Sum_probs=111.1
Q ss_pred ccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCeE-EeeeeeccCCCcceEEEEEC
Q 023642 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWK-IQKDILAKSLRWTVTDTSLS 178 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~-d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~s 178 (279)
+.++.+.+|+.........+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ... ...+..+..+++|+
T Consensus 17 ~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~s 92 (331)
T 3u4y_A 17 QHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA---IQEGQSSMADVDIT 92 (331)
T ss_dssp GGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE---EEECSSCCCCEEEC
T ss_pred cCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe---cccCCCCccceEEC
Confidence 456677788765554444556666667 9999999997766655 88999999998865 332 23344445559999
Q ss_pred CCCCEEEEEeCCC---eEEEEECCCCceeeeeccccccceeEEeeCCC---------CC---------------------
Q 023642 179 PDQRHLVYASMSP---IVHIVDVGSGTMESLANVTEIHDGLDFSAADD---------GG--------------------- 225 (279)
Q Consensus 179 p~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--------------------- 225 (279)
|+|++|+++..++ .|.+||+.+++.............+.|.+++. ..
T Consensus 93 ~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 172 (331)
T 3u4y_A 93 PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI 172 (331)
T ss_dssp TTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE
T ss_pred CCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc
Confidence 9999999555553 89999999887654433322222333333322 00
Q ss_pred -ccccEEEEEEecCCCEEE-EecCCCeEEEEECCCCeE---EEEEeCC
Q 023642 226 -YSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKL---SLRILAH 268 (279)
Q Consensus 226 -~~~~v~~~~~sp~g~~l~-t~s~d~~i~vwd~~~~~~---~~~~~~h 268 (279)
....+..++|+|+|++++ ++..++.|++||+.+++. +..+..+
T Consensus 173 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~ 220 (331)
T 3u4y_A 173 SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN 220 (331)
T ss_dssp CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS
T ss_pred cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC
Confidence 013457889999998655 445688999999998887 7777754
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.50 E-value=8.9e-13 Score=109.77 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=104.9
Q ss_pred ccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeecc----------------
Q 023642 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK---------------- 166 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------------- 166 (279)
+..+.+|+.........+.. ...+..++|+||+++|+++ ++.|.+||+.+++.........
T Consensus 114 ~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 190 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN 190 (337)
T ss_dssp CCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCC
T ss_pred CceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEee
Confidence 46677776543322223333 4567889999999988887 6889999998886543221100
Q ss_pred -----------------------------------------------CCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 023642 167 -----------------------------------------------SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 167 -----------------------------------------------~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~ 199 (279)
.+...+.+++|+||+++++++ ++.|.+||+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~ 268 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLE 268 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETT
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECC
Confidence 111234568999999999888 6899999999
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCC
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~ 269 (279)
+++....... ...+.+++|+|+|++|++++.++.|++||+.+++.+..++.+.
T Consensus 269 ~~~~~~~~~~-----------------~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 269 KNASIKRVPL-----------------PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp TTEEEEEEEC-----------------SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred CCcCcceecC-----------------CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 8876433221 1256789999999999988889999999999999999998654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-12 Score=108.38 Aligned_cols=154 Identities=10% Similarity=0.069 Sum_probs=112.2
Q ss_pred ccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeec-cCCCcceEEEEECCCC
Q 023642 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KSLRWTVTDTSLSPDQ 181 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~ 181 (279)
+..+.+|+.........+..+...+..++|+|++++|++++.++.|.+||+.+++........ .++...+..++|+|++
T Consensus 163 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 242 (353)
T 3vgz_A 163 ESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTAR 242 (353)
T ss_dssp SCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTT
T ss_pred CceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCC
Confidence 455666665433333344446666889999999999999999999999999999776553321 1245568899999999
Q ss_pred CEEEEEeC-CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe-cCCCeEEEEECCCC
Q 023642 182 RHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEAN 259 (279)
Q Consensus 182 ~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~-s~d~~i~vwd~~~~ 259 (279)
++++.++. ++.|.+||..+++........ ....++|+|+|++++.+ ..++.|.+||+.++
T Consensus 243 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~------------------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 243 QRAFITDSKAAEVLVVDTRNGNILAKVAAP------------------ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp TEEEEEESSSSEEEEEETTTCCEEEEEECS------------------SCCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred CEEEEEeCCCCEEEEEECCCCcEEEEEEcC------------------CCceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 98776664 589999999988864433210 12468999999966554 46899999999999
Q ss_pred eEEEEEeCCCcceeEE
Q 023642 260 KLSLRILAHTVNIALW 275 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v 275 (279)
+.+..+..+. .+.++
T Consensus 305 ~~~~~~~~~~-~~~~~ 319 (353)
T 3vgz_A 305 KVVKTFDTPT-HPNSL 319 (353)
T ss_dssp EEEEEEECCS-EEEEE
T ss_pred eEEEEEecCC-CCCeE
Confidence 9998887544 33443
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=124.20 Aligned_cols=136 Identities=14% Similarity=0.007 Sum_probs=101.7
Q ss_pred cccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCC----CcEEEEEcCCCeEEeeeeeccCCCcceEEEEE
Q 023642 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (279)
.++...+|++..... ..+..+.. .+++|||||++|++++.+ ..|++||+.+++... +..|...+..++|
T Consensus 130 ~~~~~~l~d~~~g~~-~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~----l~~~~~~~~~~~~ 202 (582)
T 3o4h_A 130 TEDRVALYALDGGGL-RELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV----FDSGEGSFSSASI 202 (582)
T ss_dssp CSSCEEEEEEETTEE-EEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE----ECCSSCEEEEEEE
T ss_pred CCCCceEEEccCCcE-EEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE----eecCCCccccceE
Confidence 444555776654432 23333333 889999999999988877 789999999886432 3577778999999
Q ss_pred CCCCCEEEEEeCCC--eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEE--------EecCCCEEEEecC
Q 023642 178 SPDQRHLVYASMSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK--------FSTDGRELVAGSS 247 (279)
Q Consensus 178 sp~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~sp~g~~l~t~s~ 247 (279)
+|||+.|+++..++ .|++||+.+++.. .... |...+..++ |+|||.++++++.
T Consensus 203 SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~----------------~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 265 (582)
T 3o4h_A 203 SPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL----------------PSKDFSSYRPTAITWLGYLPDGRLAVVARR 265 (582)
T ss_dssp CTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC----------------SCSHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC----------------CCcChhhhhhccccceeEcCCCcEEEEEEc
Confidence 99999999888888 8999999988765 2211 222333344 9999988889999
Q ss_pred CCeEEEEECCCCeEEE
Q 023642 248 DDCIYVYDLEANKLSL 263 (279)
Q Consensus 248 d~~i~vwd~~~~~~~~ 263 (279)
++++++|++ |+.+.
T Consensus 266 ~g~~~l~~~--g~~~~ 279 (582)
T 3o4h_A 266 EGRSAVFID--GERVE 279 (582)
T ss_dssp TTEEEEEET--TEEEC
T ss_pred CCcEEEEEE--CCeec
Confidence 999999999 66554
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-13 Score=124.23 Aligned_cols=155 Identities=16% Similarity=0.066 Sum_probs=110.4
Q ss_pred ccCCCCee-eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-----CeEEeeeeec
Q 023642 92 NYSGRGRF-SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-----GWKIQKDILA 165 (279)
Q Consensus 92 ~~~~~~~~-~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~ 165 (279)
.+++++.+ .+.++.+.+|++... ....+..+...+.+++|||||++|+++ .|+.|++||+.+ ++.....
T Consensus 88 ~~spd~~~~~~~~~~i~~~d~~~~-~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~--- 162 (706)
T 2z3z_A 88 LDAGRGLVVLFTQGGLVGFDMLAR-KVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVT--- 162 (706)
T ss_dssp EETTTTEEEEEETTEEEEEETTTT-EEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESC---
T ss_pred EECCCCeEEEEECCEEEEEECCCC-ceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEec---
Confidence 35555333 345677777876432 233466777889999999999999985 679999999998 7544321
Q ss_pred cCCCc--------------ceEEEEECCCCCEEEEEe---------------------------------CCCeEEEEEC
Q 023642 166 KSLRW--------------TVTDTSLSPDQRHLVYAS---------------------------------MSPIVHIVDV 198 (279)
Q Consensus 166 ~~~~~--------------~v~~~~~sp~~~~l~~~~---------------------------------~d~~i~i~d~ 198 (279)
..+.. .+.+++|+|||++|++++ .+..|++||+
T Consensus 163 ~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~ 242 (706)
T 2z3z_A 163 IDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL 242 (706)
T ss_dssp SCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET
T ss_pred cCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC
Confidence 12222 158899999999999987 4467999999
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC-----eEEEEECCCCeEEEEE
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEANKLSLRI 265 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~-----~i~vwd~~~~~~~~~~ 265 (279)
.+++...+... ..|...+.+++|+|||++|++++.++ .|++||+.+++....+
T Consensus 243 ~~~~~~~~~~~--------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 300 (706)
T 2z3z_A 243 ATGKTVYLQTG--------------EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTL 300 (706)
T ss_dssp TTTEEEECCCC--------------SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEE
T ss_pred CCCceEeeccC--------------CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEE
Confidence 98875433211 01344789999999999999877665 8999999998433333
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.48 E-value=7e-12 Score=105.34 Aligned_cols=177 Identities=14% Similarity=0.172 Sum_probs=110.0
Q ss_pred ccCCCCee--e-c-cccceEeeeeecCCCCcee---eC---------CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC-
Q 023642 92 NYSGRGRF--S-A-ADCCHMLSRYLPVNGPWPV---DQ---------TTSRAYVSQFSADGSLFVAGFQASQIRIYDVE- 154 (279)
Q Consensus 92 ~~~~~~~~--~-~-~d~~~~~~~~~~~~~~~~l---~~---------h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~- 154 (279)
.++++|++ . + .++.+.+|++........+ .. +...+.+++|+|||+++++...++.|.+|++.
T Consensus 92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence 34666653 2 2 4567778887542222111 11 22358899999999966777778899999998
Q ss_pred CCeEEeeeeeccCCCcceEEEEECCCCCEEEE-EeCCCeEEEEECCC--CceeeeeccccccceeEEeeCCCCCccccEE
Q 023642 155 RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIF 231 (279)
Q Consensus 155 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 231 (279)
++...............+..++|+|||+++++ ...++.+.+|++.. ++............+ + .....+.
T Consensus 172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~--~------~~~~~~~ 243 (347)
T 3hfq_A 172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD--Y------TAHNGAA 243 (347)
T ss_dssp TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT--C------CSCCEEE
T ss_pred CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC--C------CCCCcce
Confidence 55332211111122335788999999997665 55788999999874 443222111110000 0 0113588
Q ss_pred EEEEecCCCEEE-EecCCCeEEEEECC---CCeEEEEEeCCCcceeEEE
Q 023642 232 SLKFSTDGRELV-AGSSDDCIYVYDLE---ANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 232 ~~~~sp~g~~l~-t~s~d~~i~vwd~~---~~~~~~~~~~h~~~v~~v~ 276 (279)
.++|+|||++|+ +...++.|.+|++. +.+.+..+..+...+..+.
T Consensus 244 ~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~ 292 (347)
T 3hfq_A 244 AIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFD 292 (347)
T ss_dssp EEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEE
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEE
Confidence 999999999874 55568999999997 3356677776655555554
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-12 Score=115.75 Aligned_cols=116 Identities=16% Similarity=0.092 Sum_probs=96.2
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC--CCCceeeeec
Q 023642 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV--GSGTMESLAN 208 (279)
Q Consensus 131 ~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~ 208 (279)
+|+|++.++++++.|++|.+||..+++.+..+. .++ .+..++|+|||++|++++.|+.|++||+ .+++......
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~--~g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID--TGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEE--CST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEe--cCc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 388999999999999999999999998776532 133 2889999999999999999999999999 6766533221
Q ss_pred cccccceeEEeeCCCCCccccEEEEEEec----CCCEEEEecC-CCeEEEEECCCCeEEEEEeC
Q 023642 209 VTEIHDGLDFSAADDGGYSFGIFSLKFST----DGRELVAGSS-DDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~g~~l~t~s~-d~~i~vwd~~~~~~~~~~~~ 267 (279)
+...+..++|+| ||++|++++. +++|.+||..++++++++..
T Consensus 220 -----------------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~ 266 (543)
T 1nir_A 220 -----------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST 266 (543)
T ss_dssp -----------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEEC
T ss_pred -----------------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecc
Confidence 112578999999 9999998884 89999999999999999875
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-12 Score=107.07 Aligned_cols=149 Identities=15% Similarity=0.093 Sum_probs=105.3
Q ss_pred ccccceEeeeeecCCCCceee-CCCC-CeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeEEeeeeeccC---CCcceEE
Q 023642 101 AADCCHMLSRYLPVNGPWPVD-QTTS-RAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKS---LRWTVTD 174 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~l~-~h~~-~V~~~~~spd~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~v~~ 174 (279)
+.++.+.+|+.........+. ++.. .+..++|+|+++++ +++..++.|.+||+.+++.+..... .. +...+..
T Consensus 8 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~ 86 (337)
T 1pby_B 8 ARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL-STPEERVKSLFG 86 (337)
T ss_dssp ETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC-CBTTEEEECTTC
T ss_pred CCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc-CCcccccccccc
Confidence 345666677654333222333 2221 57889999999876 4556678999999999876654321 11 1225778
Q ss_pred EEECCCCCEEEEEe------------CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEE
Q 023642 175 TSLSPDQRHLVYAS------------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (279)
Q Consensus 175 ~~~sp~~~~l~~~~------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 242 (279)
++|+|+|++|++++ .++.|.+||+.+++....... ...+.+++|+|+|++|
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----------------~~~~~~~~~s~dg~~l 149 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----------------PRQITMLAWARDGSKL 149 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----------------CSSCCCEEECTTSSCE
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-----------------CCCcceeEECCCCCEE
Confidence 99999999998886 579999999998776432211 1146778999999988
Q ss_pred EEecCCCeEEEEECCCCeEEEEEeCCC
Q 023642 243 VAGSSDDCIYVYDLEANKLSLRILAHT 269 (279)
Q Consensus 243 ~t~s~d~~i~vwd~~~~~~~~~~~~h~ 269 (279)
+++ ++.|++||+.+++.+..+..+.
T Consensus 150 ~~~--~~~i~~~d~~~~~~~~~~~~~~ 174 (337)
T 1pby_B 150 YGL--GRDLHVMDPEAGTLVEDKPIQS 174 (337)
T ss_dssp EEE--SSSEEEEETTTTEEEEEECSTT
T ss_pred EEe--CCeEEEEECCCCcEeeeeeccc
Confidence 887 5789999999999888887543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=121.71 Aligned_cols=148 Identities=13% Similarity=0.094 Sum_probs=98.5
Q ss_pred ccCCCCee-eccccceEeeeeecCCCCceeeCCCCC-----eEEEEECCCCCEEEEEeCC---------CcEEEEEcCCC
Q 023642 92 NYSGRGRF-SAADCCHMLSRYLPVNGPWPVDQTTSR-----AYVSQFSADGSLFVAGFQA---------SQIRIYDVERG 156 (279)
Q Consensus 92 ~~~~~~~~-~~~d~~~~~~~~~~~~~~~~l~~h~~~-----V~~~~~spd~~~l~s~~~d---------~~i~iwd~~~~ 156 (279)
.+++++.+ .+.++.+.+|+.........+.+|... ...++|||||++|+.++.+ +.+.+||+.++
T Consensus 23 ~w~~dg~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~ 102 (740)
T 4a5s_A 23 RWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR 102 (740)
T ss_dssp EECSSSEEEEEETTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred EECCCCcEEEEcCCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCC
Confidence 34555554 233778888887666655556666533 2447899999999998876 56679999999
Q ss_pred eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCc----cccEEE
Q 023642 157 WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGY----SFGIFS 232 (279)
Q Consensus 157 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~ 232 (279)
+... +..+...+..++|||||+.||.+. ++.|++||+.++....+.. .......+.+..+--+ -+....
T Consensus 103 ~~~~----l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~--~g~~~~~~~g~~~~v~~ee~~~~~~~ 175 (740)
T 4a5s_A 103 QLIT----EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITW--TGKEDIIYNGITDWVYEEEVFSAYSA 175 (740)
T ss_dssp EECC----SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCS--CCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred cEEE----cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcC--CCCccceecCcccccccchhcCCCcc
Confidence 6432 456667899999999999999885 6799999999887644322 1111111211110000 012235
Q ss_pred EEEecCCCEEEEec
Q 023642 233 LKFSTDGRELVAGS 246 (279)
Q Consensus 233 ~~~sp~g~~l~t~s 246 (279)
+.|||||++|+.++
T Consensus 176 ~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 176 LWWSPNGTFLAYAQ 189 (740)
T ss_dssp EEECTTSSEEEEEE
T ss_pred eEECCCCCEEEEEE
Confidence 89999999998865
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-13 Score=126.48 Aligned_cols=127 Identities=12% Similarity=0.113 Sum_probs=97.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCc---ceEEEEECCCCCEEEEEeCC---------Ce
Q 023642 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASMS---------PI 192 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~~~d---------~~ 192 (279)
..+.+++|+|||+++++ +.|+.|++||+.+++.... ...|.. .|.+++|||||++|++++.+ +.
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~---~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVL---IEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEE---ECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEE---eccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 34677899999997766 7899999999999865433 234443 48999999999999998864 78
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCc
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~ 270 (279)
+++||+.+++...+... .+|...+..++|||||++|++++. +.|++||+.+++..+....+..
T Consensus 93 i~~~d~~~~~~~~l~~~--------------~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~ 155 (723)
T 1xfd_A 93 YVLSKIPHGDPQSLDPP--------------EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKE 155 (723)
T ss_dssp EEEEESSSCCCEECCCT--------------TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBT
T ss_pred EEEEECCCCceEeccCC--------------ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCC
Confidence 88999998876332211 013345788999999999998885 7899999999888776665444
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-12 Score=125.60 Aligned_cols=132 Identities=17% Similarity=0.160 Sum_probs=109.0
Q ss_pred CCCCeEEEEEC-CCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCc-ceEEEEECCCCCEEEEEeCCCeEE-EEECC
Q 023642 123 TTSRAYVSQFS-ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-TVTDTSLSPDQRHLVYASMSPIVH-IVDVG 199 (279)
Q Consensus 123 h~~~V~~~~~s-pd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~d~~i~-i~d~~ 199 (279)
|...+.+++|| |||++|++++ ++.|.+|++..+.... ...|.. .+..++|+ ||+.|++++.+..+. +||+.
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~ 367 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR 367 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE----ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC
Confidence 34479999999 9999999888 7899999998875432 345666 79999999 999999999888898 99998
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
++....+. +|...+..++|+|||++|++++.++.|++||+.+++....+.+|...+.++..
T Consensus 368 ~~~~~~l~-----------------~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~ 428 (1045)
T 1k32_A 368 TGKAEKFE-----------------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI 428 (1045)
T ss_dssp TCCEEECC-----------------CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred CCCceEec-----------------CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEE
Confidence 87654322 13447899999999999999999999999999999988888888888776654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-11 Score=103.46 Aligned_cols=143 Identities=15% Similarity=0.081 Sum_probs=101.6
Q ss_pred cceEeeeeecCCCC--ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeecc---------------
Q 023642 104 CCHMLSRYLPVNGP--WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK--------------- 166 (279)
Q Consensus 104 ~~~~~~~~~~~~~~--~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------------- 166 (279)
..+.+|++...... .....+...+.+++|+|||+ +++++. .|.+||+.+++.........
T Consensus 125 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (349)
T 1jmx_B 125 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW 201 (349)
T ss_dssp CEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCC
T ss_pred CeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeee
Confidence 67777776552211 12223445688999999999 555544 49999999886554321110
Q ss_pred --------------------------------------------------CCCcceEEEEECC-CCCEEEEEeCCCeEEE
Q 023642 167 --------------------------------------------------SLRWTVTDTSLSP-DQRHLVYASMSPIVHI 195 (279)
Q Consensus 167 --------------------------------------------------~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i 195 (279)
.+...+..++|+| ++++++++ ++.|.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~ 279 (349)
T 1jmx_B 202 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAK 279 (349)
T ss_dssp CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEE
T ss_pred cCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEE
Confidence 0011356778889 99999888 889999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
||+.+++....... ...+.+++|+|+|++|++++.++.|++||+.+++.+..++..
T Consensus 280 ~d~~~~~~~~~~~~-----------------~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 280 YDLKQRKLIKAANL-----------------DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EETTTTEEEEEEEC-----------------SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EECccCeEEEEEcC-----------------CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 99998876433221 114678999999998888888899999999999999998765
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-11 Score=101.66 Aligned_cols=158 Identities=10% Similarity=0.042 Sum_probs=103.1
Q ss_pred ccCCCCee--ecccc----ceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEE-EEeCCCc-EEEEEcCCCeEEeee-
Q 023642 92 NYSGRGRF--SAADC----CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFV-AGFQASQ-IRIYDVERGWKIQKD- 162 (279)
Q Consensus 92 ~~~~~~~~--~~~d~----~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~-s~~~d~~-i~iwd~~~~~~~~~~- 162 (279)
.+++++.+ .+.+. .+.+|+.........+. +.....+++|+|||++|+ +...++. |.+|++.....+...
T Consensus 90 ~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~ 168 (331)
T 3u4y_A 90 DITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG 168 (331)
T ss_dssp EECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred EECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC
Confidence 45666653 22223 67777654433323333 345569999999998655 4456688 999999864322111
Q ss_pred eeccCCCcceEEEEECCCCCEEEEE-eCCCeEEEEECCCCce---eeeeccccccceeEEeeCCCCCccccEEEEEEecC
Q 023642 163 ILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTM---ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238 (279)
Q Consensus 163 ~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 238 (279)
.........+..++|+|+|++++.+ ..++.|.+||+.+++. ..... ....+..++|+||
T Consensus 169 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-----------------~~~~~~~~~~spd 231 (331)
T 3u4y_A 169 QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-----------------TNNLPGTIVVSRD 231 (331)
T ss_dssp EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-----------------CSSCCCCEEECTT
T ss_pred CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-----------------CCCCCceEEECCC
Confidence 1111333458999999999976554 4689999999998775 22111 1125678999999
Q ss_pred CCEEEEec-CCCeEEEEECCCCeE--EEEEeC
Q 023642 239 GRELVAGS-SDDCIYVYDLEANKL--SLRILA 267 (279)
Q Consensus 239 g~~l~t~s-~d~~i~vwd~~~~~~--~~~~~~ 267 (279)
|++|+.++ .++.|.+||+.+++. +..+..
T Consensus 232 g~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~ 263 (331)
T 3u4y_A 232 GSTVYVLTESTVDVFNFNQLSGTLSFVKSFGH 263 (331)
T ss_dssp SSEEEEECSSEEEEEEEETTTTEEEEEEEEEC
T ss_pred CCEEEEEEcCCCEEEEEECCCCceeeeccccc
Confidence 99776554 577899999999887 555543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-11 Score=100.93 Aligned_cols=153 Identities=16% Similarity=0.106 Sum_probs=100.4
Q ss_pred ccCCCCeee-c----cccceEeeeeecCCCC--ceeeCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCC-CeE--Ee
Q 023642 92 NYSGRGRFS-A----ADCCHMLSRYLPVNGP--WPVDQTTSRAYVSQFSADGSLFVAGF-QASQIRIYDVER-GWK--IQ 160 (279)
Q Consensus 92 ~~~~~~~~~-~----~d~~~~~~~~~~~~~~--~~l~~h~~~V~~~~~spd~~~l~s~~-~d~~i~iwd~~~-~~~--~~ 160 (279)
.++++|++. . .++.+.+|++...... ..+..+...+..++|+|||++|++++ .++.|.+|++.. +.. +.
T Consensus 46 a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~ 125 (347)
T 3hfq_A 46 ALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTD 125 (347)
T ss_dssp EECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred EEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecc
Confidence 356666542 1 1467778887433211 12345778889999999999988887 778999999963 322 21
Q ss_pred eeeeccC-------CCcceEEEEECCCCCEEEEEeCCCeEEEEECC-CCceeeeeccccccceeEEeeCCCCCccccEEE
Q 023642 161 KDILAKS-------LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFS 232 (279)
Q Consensus 161 ~~~~~~~-------~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 232 (279)
.. ...+ ....+.+++|+|||+++++...++.|++||+. ++.......... . ....+..
T Consensus 126 ~~-~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~--------~-----~g~~p~~ 191 (347)
T 3hfq_A 126 TV-QHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTM--------E-----AGFGPRH 191 (347)
T ss_dssp EE-ECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEEC--------C-----TTCCEEE
T ss_pred ee-ecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEc--------C-----CCCCCce
Confidence 11 1111 12348899999999966666678899999998 454432211100 0 1125678
Q ss_pred EEEecCCCEEEE-ecCCCeEEEEECCC
Q 023642 233 LKFSTDGRELVA-GSSDDCIYVYDLEA 258 (279)
Q Consensus 233 ~~~sp~g~~l~t-~s~d~~i~vwd~~~ 258 (279)
++|+|||+++++ ...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 999999996665 56688999999874
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.40 E-value=5.3e-12 Score=113.71 Aligned_cols=125 Identities=8% Similarity=0.013 Sum_probs=93.3
Q ss_pred CeEEEEECCCCCE-EEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC----CeEEEEECCC
Q 023642 126 RAYVSQFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS----PIVHIVDVGS 200 (279)
Q Consensus 126 ~V~~~~~spd~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~i~i~d~~~ 200 (279)
.+...+|+||++. +++++.++.+.+||+.+++..... .+.. .+++|+|||++|++++.+ ..|++||+.+
T Consensus 111 ~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~----~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~ 184 (582)
T 3o4h_A 111 PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA----RLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS 184 (582)
T ss_dssp SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE----EESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTT
T ss_pred CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee----cCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC
Confidence 3456788888863 333344455669999988654321 2222 789999999999988876 7899999998
Q ss_pred CceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC--eEEEEECCCCeEEEEEeCCCcceeE
Q 023642 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRILAHTVNIAL 274 (279)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~--~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (279)
++...+.. |...+..++|||||++|+++..++ .|++||+.+++.. .+.+|...+..
T Consensus 185 g~~~~l~~-----------------~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~ 242 (582)
T 3o4h_A 185 GGLRVFDS-----------------GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSS 242 (582)
T ss_dssp CCCEEECC-----------------SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHH
T ss_pred CCceEeec-----------------CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhh
Confidence 88653321 445789999999999999888888 8999999999887 77777765544
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.39 E-value=6.1e-11 Score=100.20 Aligned_cols=133 Identities=13% Similarity=0.175 Sum_probs=90.2
Q ss_pred CCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCeE------Eee----eeeccCCCcceEEEEECCCCCEEEEEe-CCC
Q 023642 124 TSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWK------IQK----DILAKSLRWTVTDTSLSPDQRHLVYAS-MSP 191 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~-~d~~i~iwd~~~~~~------~~~----~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~ 191 (279)
...+.+++|+|||++|++++ .++.|.+|+++.... +.. ..........+..++|+|||+++++++ .++
T Consensus 154 ~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 233 (361)
T 3scy_A 154 MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG 233 (361)
T ss_dssp SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTC
T ss_pred CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCC
Confidence 34568899999999776555 578999999875431 110 111223344578999999999887777 689
Q ss_pred eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC--CCeEEEEECC--CCe--EEEEE
Q 023642 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLE--ANK--LSLRI 265 (279)
Q Consensus 192 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~--d~~i~vwd~~--~~~--~~~~~ 265 (279)
.|.+||+.++............ .+......++|+|||++|+++.. ++.|.+|++. +++ .+..+
T Consensus 234 ~v~v~~~~~g~~~~~~~~~~~~-----------~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~ 302 (361)
T 3scy_A 234 TVIAFRYADGMLDEIQTVAADT-----------VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ 302 (361)
T ss_dssp EEEEEEEETTEEEEEEEEESCS-----------SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE
T ss_pred eEEEEEecCCceEEeEEEecCC-----------CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe
Confidence 9999999877653332211100 02235689999999999876665 4899999995 444 45555
Q ss_pred eC
Q 023642 266 LA 267 (279)
Q Consensus 266 ~~ 267 (279)
..
T Consensus 303 ~~ 304 (361)
T 3scy_A 303 LT 304 (361)
T ss_dssp EC
T ss_pred cC
Confidence 54
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.39 E-value=5.6e-12 Score=105.51 Aligned_cols=150 Identities=11% Similarity=0.094 Sum_probs=103.0
Q ss_pred ccccceEeeeeecCCCCceeeCCC-CCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeEEeeeeeccCC----CcceEE
Q 023642 101 AADCCHMLSRYLPVNGPWPVDQTT-SRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSL----RWTVTD 174 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~l~~h~-~~V~~~~~spd~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~v~~ 174 (279)
+.+..+.+|+.........+..+. ..+..++|+|++++++ ++..++.|.+||+.+++...... .... ...+..
T Consensus 18 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~-~~~~~~~~~~~~~~ 96 (349)
T 1jmx_B 18 NYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN-LSSVPGEVGRSMYS 96 (349)
T ss_dssp ETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-SCCSTTEEEECSSC
T ss_pred CCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE-cccccccccccccc
Confidence 456677777764433333344332 2578899999998664 55578999999999987655432 1111 223788
Q ss_pred EEECCCCCEEEEEeCC------------CeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEE
Q 023642 175 TSLSPDQRHLVYASMS------------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (279)
Q Consensus 175 ~~~sp~~~~l~~~~~d------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 242 (279)
++|+|||++|++++.+ +.|.+||+.+++....... +. +...+.+++|+|+|+ +
T Consensus 97 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--------~~------~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT--------FP------MPRQVYLMRAADDGS-L 161 (349)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE--------EE------CCSSCCCEEECTTSC-E
T ss_pred eEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee--------cc------CCCcccceeECCCCc-E
Confidence 9999999999988865 8999999987653221111 10 112578899999999 5
Q ss_pred EEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 243 VAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 243 ~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
+.++. .|++||+.+++.+..+..+
T Consensus 162 ~~~~~--~i~~~d~~~~~~~~~~~~~ 185 (349)
T 1jmx_B 162 YVAGP--DIYKMDVKTGKYTVALPLR 185 (349)
T ss_dssp EEESS--SEEEECTTTCCEEEEECST
T ss_pred EEccC--cEEEEeCCCCceecccccc
Confidence 55543 3999999999988888754
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.39 E-value=6.7e-12 Score=114.64 Aligned_cols=133 Identities=15% Similarity=0.105 Sum_probs=97.4
Q ss_pred CCCceeeC-----CCCCeEEEEECCCCCEEEEEeCC----------CcEEEEEcCC------CeEEeeeeecc-CCCcce
Q 023642 115 NGPWPVDQ-----TTSRAYVSQFSADGSLFVAGFQA----------SQIRIYDVER------GWKIQKDILAK-SLRWTV 172 (279)
Q Consensus 115 ~~~~~l~~-----h~~~V~~~~~spd~~~l~s~~~d----------~~i~iwd~~~------~~~~~~~~~~~-~~~~~v 172 (279)
.....+.. |...+..++|||||+.|++++.| ..|++||+.+ +... . +. .+...+
T Consensus 115 ~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~---l~~~~~~~~ 190 (662)
T 3azo_A 115 AVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-E---LSDDAHRFV 190 (662)
T ss_dssp CCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-E---SSCSCSSEE
T ss_pred CCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-E---EEecCCCcc
Confidence 34445665 67789999999999999998876 5899999988 5432 2 23 444578
Q ss_pred EEEEECCCCCEEEEEeCC--------CeEEEEECC-CC---ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC
Q 023642 173 TDTSLSPDQRHLVYASMS--------PIVHIVDVG-SG---TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240 (279)
Q Consensus 173 ~~~~~sp~~~~l~~~~~d--------~~i~i~d~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 240 (279)
..++|+|||++|+.++.+ ..|++||+. ++ +...+.. . +...+..+.|+|||+
T Consensus 191 ~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~-----------~-----~~~~~~~~~~spdg~ 254 (662)
T 3azo_A 191 TGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG-----------G-----PEEAIAQAEWAPDGS 254 (662)
T ss_dssp CCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE-----------E-----TTBCEEEEEECTTSC
T ss_pred cCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC-----------C-----CCceEcceEECCCCe
Confidence 889999999999987754 379999998 56 2222211 1 234789999999999
Q ss_pred EEEEecCCC--eEEEEECCCCeEEEEEeC
Q 023642 241 ELVAGSSDD--CIYVYDLEANKLSLRILA 267 (279)
Q Consensus 241 ~l~t~s~d~--~i~vwd~~~~~~~~~~~~ 267 (279)
+++++..++ .|++||+.+++....+.+
T Consensus 255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 283 (662)
T 3azo_A 255 LIVATDRTGWWNLHRVDPATGAATQLCRR 283 (662)
T ss_dssp EEEEECTTSSCEEEEECTTTCCEEESSCC
T ss_pred EEEEECCCCCeEEEEEECCCCceeecccc
Confidence 888888787 777888777766544443
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-10 Score=98.61 Aligned_cols=154 Identities=9% Similarity=-0.073 Sum_probs=99.0
Q ss_pred cccceEeeeeecCCC-Cceee----CCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcC-CCeEEeee-eeccCCCcceE
Q 023642 102 ADCCHMLSRYLPVNG-PWPVD----QTTSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVE-RGWKIQKD-ILAKSLRWTVT 173 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~-~~~l~----~h~~~V~~~~~spd~~~l~s~~~-d~~i~iwd~~-~~~~~~~~-~~~~~~~~~v~ 173 (279)
.++.+.+|++..... ...+. .+...+.+++|+|||++|+++.. ++.|++||+. +++..... .....+...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 356677787753221 11222 35678999999999998887764 6799999998 67542211 11112345689
Q ss_pred EEEECCCCCEEEEEeC-CCeEEEEECC--CCceee-eeccccccceeEEeeCCCCCccc------cEEEEE-EecCCCEE
Q 023642 174 DTSLSPDQRHLVYASM-SPIVHIVDVG--SGTMES-LANVTEIHDGLDFSAADDGGYSF------GIFSLK-FSTDGREL 242 (279)
Q Consensus 174 ~~~~sp~~~~l~~~~~-d~~i~i~d~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~-~sp~g~~l 242 (279)
.++|+|||++|++++. ++.+.+|++. +++... ....... +....+|.. .+..++ |+|||++|
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI-------PPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS-------CTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcC-------CCCcCCcccccccccccccEEEECCCCCEE
Confidence 9999999999888774 7899999865 454321 0000000 000011222 478999 99999998
Q ss_pred EEecCC-C-----eEEEEECC-CCeEE
Q 023642 243 VAGSSD-D-----CIYVYDLE-ANKLS 262 (279)
Q Consensus 243 ~t~s~d-~-----~i~vwd~~-~~~~~ 262 (279)
+++..+ . +|.+|++. +++..
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~ 296 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIE 296 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEE
Confidence 876543 2 89999996 56654
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.33 E-value=6.7e-11 Score=100.63 Aligned_cols=147 Identities=10% Similarity=0.065 Sum_probs=107.8
Q ss_pred eccccceEeeeeecCC----------CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC
Q 023642 100 SAADCCHMLSRYLPVN----------GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR 169 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~----------~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 169 (279)
.+....+++|+..... .+.....+.. |+.++| |+++|+++ .++.|++||+.+-..... ...|.
T Consensus 54 a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~---~~~~~ 126 (388)
T 1xip_A 54 AASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRT---VTSFE 126 (388)
T ss_dssp EEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEE---EEECS
T ss_pred EeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCc---cceee
Confidence 4444566667654332 2223445777 999999 99999999 889999999987643332 23455
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC
Q 023642 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~ 249 (279)
.++.++.+.+. .++++..||.+.+||+.++..... ...|.+++|||+| ++.|..|+
T Consensus 127 ~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~~--------------------~~~Vs~v~WSpkG--~~vg~~dg 182 (388)
T 1xip_A 127 KPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL--------------------AQNVTSFDVTNSQ--LAVLLKDR 182 (388)
T ss_dssp SCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE--------------------EESEEEEEECSSE--EEEEETTS
T ss_pred cceeeEEecCC--CEEEEECCCCEEEEEccCCccccc--------------------cCCceEEEEcCCc--eEEEEcCC
Confidence 67888777654 388899999999999998776431 1279999999999 67788899
Q ss_pred eEEEEECCCCeE--EEEE------e---CCCcceeEEEe
Q 023642 250 CIYVYDLEANKL--SLRI------L---AHTVNIALWIT 277 (279)
Q Consensus 250 ~i~vwd~~~~~~--~~~~------~---~h~~~v~~v~~ 277 (279)
++++|+...++. ..++ . +|...|.++.+
T Consensus 183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~w 221 (388)
T 1xip_A 183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTI 221 (388)
T ss_dssp CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEE
T ss_pred cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEE
Confidence 999999988775 6667 2 36667777654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-11 Score=110.18 Aligned_cols=147 Identities=16% Similarity=0.108 Sum_probs=100.8
Q ss_pred Cceee-CCCCCeEEEEECCCCCEEEEEeCC--------CcEEEEEcC-CCe--EEeeeeeccCCCcceEEEEECCCCCEE
Q 023642 117 PWPVD-QTTSRAYVSQFSADGSLFVAGFQA--------SQIRIYDVE-RGW--KIQKDILAKSLRWTVTDTSLSPDQRHL 184 (279)
Q Consensus 117 ~~~l~-~h~~~V~~~~~spd~~~l~s~~~d--------~~i~iwd~~-~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l 184 (279)
...+. .+...+..++|||||++|+.++.+ ..|++||+. ++. .... ....+...+..++|+|||+++
T Consensus 179 ~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~--l~~~~~~~~~~~~~spdg~l~ 256 (662)
T 3azo_A 179 VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT--LLGGPEEAIAQAEWAPDGSLI 256 (662)
T ss_dssp SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE--EEEETTBCEEEEEECTTSCEE
T ss_pred eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE--eCCCCCceEcceEECCCCeEE
Confidence 34455 667788899999999999887755 379999999 562 2222 223456679999999999988
Q ss_pred EEEeCCC--eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEE--ECCCCe
Q 023642 185 VYASMSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY--DLEANK 260 (279)
Q Consensus 185 ~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vw--d~~~~~ 260 (279)
++++.++ .|.+||+.+++...+...........+ ...+..++|+|+++++++++. +.+++| |+.+++
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w--------~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 257 VATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLW--------TPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp EEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCC--------STTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred EEECCCCCeEEEEEECCCCceeecccccccccCccc--------cccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence 8888888 677777767765433321110000000 011456899999999999988 888888 666565
Q ss_pred EEEEEeCCCcceeEE
Q 023642 261 LSLRILAHTVNIALW 275 (279)
Q Consensus 261 ~~~~~~~h~~~v~~v 275 (279)
+..+..|...+..+
T Consensus 328 -~~~l~~~~~~~~~~ 341 (662)
T 3azo_A 328 -LVDAAGPWTEWAAT 341 (662)
T ss_dssp -EEECCSSCCEEEEE
T ss_pred -EEEecCCCCeEEEE
Confidence 67787777666554
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-11 Score=113.73 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=89.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCc-----ceEEEEECCCCCEEEEEeCC---------
Q 023642 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-----TVTDTSLSPDQRHLVYASMS--------- 190 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~sp~~~~l~~~~~d--------- 190 (279)
....+++|+||+++++++ |+.|++||+.++++... +..|.. ...+++|||||++|+.++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF---LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEE---ECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEE---EechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence 345679999999988886 89999999999976432 233332 23458999999999998876
Q ss_pred CeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEE
Q 023642 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL 263 (279)
Q Consensus 191 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~ 263 (279)
+.+.+||+.+++...+.. |...+..++|||||+.||.+. ++.|++||+.+++..+
T Consensus 92 ~~~~~~d~~~~~~~~l~~-----------------~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~ 146 (740)
T 4a5s_A 92 ASYDIYDLNKRQLITEER-----------------IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYR 146 (740)
T ss_dssp EEEEEEETTTTEECCSSC-----------------CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEE
T ss_pred eEEEEEECCCCcEEEccc-----------------CCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEE
Confidence 567799999988643221 334789999999999999875 6899999999887554
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.6e-12 Score=115.80 Aligned_cols=114 Identities=17% Similarity=0.189 Sum_probs=86.9
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCc---ceEEEEECCCCCEEEEEeC---------CCeEEEE
Q 023642 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASM---------SPIVHIV 196 (279)
Q Consensus 129 ~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~~~---------d~~i~i~ 196 (279)
+++|+||+++++ .+.|+.|++||+.+++.... ...+.. .+.+++|||||++|++++. ++.|++|
T Consensus 20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLH-QSADNNIVLYNIETGQSYTI---LSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEE-ECTTSCEEEEESSSCCEEEE---ECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEE---EccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence 679999996554 45699999999999876443 222222 3899999999999998876 7899999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEE
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 264 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~ 264 (279)
|+.+++....... ...+..++|||||++|+++. ++.|++||+.+++..+.
T Consensus 96 d~~~g~~~~~~~l-----------------~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l 145 (719)
T 1z68_A 96 DLSNGEFVRGNEL-----------------PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI 145 (719)
T ss_dssp ETTTTEECCSSCC-----------------CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred ECCCCccccceec-----------------CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE
Confidence 9999876211111 01577899999999999886 78999999998876543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-10 Score=97.36 Aligned_cols=139 Identities=17% Similarity=0.063 Sum_probs=96.5
Q ss_pred ceeeCCCCCeEE-----EEECCCCCEEEEEeC-CC--cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC
Q 023642 118 WPVDQTTSRAYV-----SQFSADGSLFVAGFQ-AS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (279)
Q Consensus 118 ~~l~~h~~~V~~-----~~~spd~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 189 (279)
..+..|...... .+|||||++|+.++. ++ .|.+||+.+++.... ...+...+..+.|+|||+.|+.++.
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l---t~~~~~~~~~~~~spdg~~l~~~~~ 100 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL---TEGRGDNTFGGFLSPDDDALFYVKD 100 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC---CCSSCBCSSSCEECTTSSEEEEEET
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe---eeCCCCCccceEEcCCCCEEEEEeC
Confidence 345566665665 889999999998887 66 488899998865442 2344444556789999999999999
Q ss_pred CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEE--EEecCCCEEEEe----------------------
Q 023642 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSL--KFSTDGRELVAG---------------------- 245 (279)
Q Consensus 190 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~g~~l~t~---------------------- 245 (279)
++.+++||+.+++...+... +...+... .++|++++++..
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~----------------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQV----------------PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp TTEEEEEETTTCCEEEEEEC----------------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred CCeEEEEECCCCcceeeeec----------------hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence 99999999999886544322 11133223 348999988742
Q ss_pred cCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 246 SSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 246 s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
..+..|++||+.+++.... ..+...+..+.
T Consensus 165 ~~~~~l~~~d~~~g~~~~l-~~~~~~~~~~~ 194 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGESTVI-LQENQWLGHPI 194 (388)
T ss_dssp CCCEEEEEEETTTCCEEEE-EEESSCEEEEE
T ss_pred CCcceEEEEECCCCceEEe-ecCCccccccE
Confidence 2446899999998865443 33444454443
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.5e-10 Score=95.88 Aligned_cols=155 Identities=13% Similarity=0.079 Sum_probs=99.8
Q ss_pred ccCCCCee--ec--cccceEeeeeec-CCCC--ceee--CCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcC--CCeEE
Q 023642 92 NYSGRGRF--SA--ADCCHMLSRYLP-VNGP--WPVD--QTTSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVE--RGWKI 159 (279)
Q Consensus 92 ~~~~~~~~--~~--~d~~~~~~~~~~-~~~~--~~l~--~h~~~V~~~~~spd~~~l~s~~~-d~~i~iwd~~--~~~~~ 159 (279)
.++++|++ .+ .++.+.+|++.+ .... ..+. .|...+..++|+|||++|++++. ++.|.+|+++ +++..
T Consensus 151 ~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~ 230 (365)
T 1jof_A 151 VFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV 230 (365)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEE
Confidence 46788763 22 245677787763 2211 1122 24677999999999999988775 6899999875 45432
Q ss_pred e---eeeecc----CCCc------ceEEEE-ECCCCCEEEEEeCC-C-----eEEEEECC-CCceeeeeccccccceeEE
Q 023642 160 Q---KDILAK----SLRW------TVTDTS-LSPDQRHLVYASMS-P-----IVHIVDVG-SGTMESLANVTEIHDGLDF 218 (279)
Q Consensus 160 ~---~~~~~~----~~~~------~v~~~~-~sp~~~~l~~~~~d-~-----~i~i~d~~-~~~~~~~~~~~~~~~~~~~ 218 (279)
. ...... ++.. .+..++ |+|||++|++++.+ . .|.+|++. +++....... .
T Consensus 231 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~--------~ 302 (365)
T 1jof_A 231 YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL--------S 302 (365)
T ss_dssp EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE--------E
T ss_pred EccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee--------e
Confidence 1 111111 2222 488999 99999998876643 2 89999996 5554321110 0
Q ss_pred eeCCCCCccccEEEEEEec---CCCEEEEecCC-CeEEEEECCCC
Q 023642 219 SAADDGGYSFGIFSLKFST---DGRELVAGSSD-DCIYVYDLEAN 259 (279)
Q Consensus 219 ~~~~~~~~~~~v~~~~~sp---~g~~l~t~s~d-~~i~vwd~~~~ 259 (279)
.. +...+..++|+| ||++|++++.+ +.|.+|++...
T Consensus 303 ~~-----~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 303 PT-----PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EC-----SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ec-----CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 00 111345688999 89999988864 89999998765
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-10 Score=105.49 Aligned_cols=137 Identities=15% Similarity=0.180 Sum_probs=96.5
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCC-----cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCe----
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI---- 192 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~---- 192 (279)
+|...+..++|||||++|+.+..++ .|++||+.+++...... ... .+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--~~~--~~~~~~wspDg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--ERV--KFSCMAWTHDGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE--EEE--CSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc--cCc--ccceEEEEeCCCEEEEEEECCccccc
Confidence 3445688999999999998775543 89999999997655322 111 2677999999999999887765
Q ss_pred ------------EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-----CCeEEEEE
Q 023642 193 ------------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----DDCIYVYD 255 (279)
Q Consensus 193 ------------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-----d~~i~vwd 255 (279)
|++|++.++...... .+... .|...+..+.|+|||++|+..+. +..|++||
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~---------v~~~~---~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d 265 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDIL---------CAEFP---DEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD 265 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEE---------EECCT---TCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred cccccccCCCCEEEEEECCCCcccceE---------EeccC---CCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEE
Confidence 999999877632111 01110 13336788999999999887654 56899999
Q ss_pred CCC------Ce-EEEEEeCCCcceeE
Q 023642 256 LEA------NK-LSLRILAHTVNIAL 274 (279)
Q Consensus 256 ~~~------~~-~~~~~~~h~~~v~~ 274 (279)
+.+ +. ....+..+...+..
T Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (710)
T 2xdw_A 266 LQQESNGITGILKWVKLIDNFEGEYD 291 (710)
T ss_dssp GGGSSSSSCSSCCCEEEECSSSSCEE
T ss_pred CcccccccCCccceEEeeCCCCcEEE
Confidence 986 43 45666666555443
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-10 Score=105.04 Aligned_cols=136 Identities=13% Similarity=0.091 Sum_probs=92.6
Q ss_pred CCCCCeEEEEECCCCCEEEE-----EeCCCcEEEEEcCCCeEE-eeeeeccCCCcceEEEEECCCCCEEEEEeCCCe---
Q 023642 122 QTTSRAYVSQFSADGSLFVA-----GFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI--- 192 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s-----~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~--- 192 (279)
+|...+..++|||||++|+. |+.+..|++||+.+++.+ .. ..... ....++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~--~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD--VIEGG--KYATPKWTPDSKGFYYEWLPTDPSI 193 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC--CBSCC--TTCCCEECTTSSEEEEEECCCCTTS
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc--ccCcc--cccceEEecCCCEEEEEEecCCCCC
Confidence 45667999999999999983 444568999999998654 11 11111 1267899999999999988776
Q ss_pred ----------EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC----eEEEEECCC
Q 023642 193 ----------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----CIYVYDLEA 258 (279)
Q Consensus 193 ----------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~----~i~vwd~~~ 258 (279)
|++|++.++...... .+.. ..+...+..+.|||||++|+..+.++ .|++||..+
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~l---------v~~~---~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~ 261 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTV---------VHER---TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE 261 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEE---------EECC---CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC
T ss_pred ccccCCCCCEEEEEECCCCchhceE---------EEec---CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC
Confidence 999999887632110 0111 01334788999999999998777555 788887766
Q ss_pred CeEEEEEeCCCcceeE
Q 023642 259 NKLSLRILAHTVNIAL 274 (279)
Q Consensus 259 ~~~~~~~~~h~~~v~~ 274 (279)
++. ..+..+...+..
T Consensus 262 ~~~-~~l~~~~~~~~~ 276 (695)
T 2bkl_A 262 KDF-RLLVKGVGAKYE 276 (695)
T ss_dssp SSC-EEEEECSSCCEE
T ss_pred Cce-EEeecCCCceEE
Confidence 543 344444444333
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-09 Score=92.89 Aligned_cols=151 Identities=9% Similarity=-0.033 Sum_probs=99.1
Q ss_pred CccCCCCee---ecc-ccceEeeeeec--CCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeee
Q 023642 91 GNYSGRGRF---SAA-DCCHMLSRYLP--VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL 164 (279)
Q Consensus 91 ~~~~~~~~~---~~~-d~~~~~~~~~~--~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 164 (279)
..++++|+. .+. ++...+|.+.. ........++...+..++|+|||+.|+.++.++.|++||+.+++....
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~--- 117 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVV--- 117 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEE---
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceee---
Confidence 356777763 233 44333443332 222223445555556788999999999999999999999999865432
Q ss_pred ccCCCcceEEE--EECCCCCEEEEEe----------------------CCCeEEEEECCCCceeeeeccccccceeEEee
Q 023642 165 AKSLRWTVTDT--SLSPDQRHLVYAS----------------------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (279)
Q Consensus 165 ~~~~~~~v~~~--~~sp~~~~l~~~~----------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 220 (279)
...+...+... .++|++++++... .+..|++||+.+++...+..
T Consensus 118 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~------------ 185 (388)
T 3pe7_A 118 YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ------------ 185 (388)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE------------
T ss_pred eechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec------------
Confidence 12333334333 4589999987432 34689999999987654322
Q ss_pred CCCCCccccEEEEEEec-CCCEEEEecCC------CeEEEEECCCCeE
Q 023642 221 ADDGGYSFGIFSLKFST-DGRELVAGSSD------DCIYVYDLEANKL 261 (279)
Q Consensus 221 ~~~~~~~~~v~~~~~sp-~g~~l~t~s~d------~~i~vwd~~~~~~ 261 (279)
+...+..+.|+| ||+.|+..+.+ ..|.++|+.++..
T Consensus 186 -----~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (388)
T 3pe7_A 186 -----ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM 228 (388)
T ss_dssp -----ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC
T ss_pred -----CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce
Confidence 223688999999 99988876643 3788889875543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.10 E-value=7.4e-09 Score=87.75 Aligned_cols=101 Identities=15% Similarity=0.050 Sum_probs=71.6
Q ss_pred ccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEEcCCCeEEeeeeeccC---CC
Q 023642 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKS---LR 169 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~---~~ 169 (279)
++.+.+|+.........+..+..+ .++|+||+++++++. .++.|.+||+.+.+.+..+..... +.
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g 107 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL 107 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBC
T ss_pred cCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccC
Confidence 456666664333323335555444 899999999998886 367899999998877665433211 22
Q ss_pred cceEEEEECCCCCEEEEEeC--CCeEEEEECCCCceee
Q 023642 170 WTVTDTSLSPDQRHLVYASM--SPIVHIVDVGSGTMES 205 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~--d~~i~i~d~~~~~~~~ 205 (279)
.....++|+|||++|++++. ++.|.+||+.+++...
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~ 145 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVE 145 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEE
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEE
Confidence 35678999999999998874 5799999999887644
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=9e-09 Score=83.85 Aligned_cols=120 Identities=13% Similarity=0.171 Sum_probs=86.4
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCC-eEEEEECCC
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-IVHIVDVGS 200 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~i~i~d~~~ 200 (279)
++...+..++++|+|+++++...++.|++||... ..+... ...++...+..++++|+|+++++...++ .|.+||..
T Consensus 161 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~-~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~- 237 (286)
T 1q7f_A 161 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQI-GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD- 237 (286)
T ss_dssp TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEE-SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-
T ss_pred CccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-CEEEEE-ccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-
Confidence 4556789999999999888888889999999854 343332 1122335689999999999888888776 99999965
Q ss_pred CceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
++...... ... ....+.+++++|+|+++++ +.+++|++|++...
T Consensus 238 g~~~~~~~-----------~~~---~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 238 GQLISALE-----------SKV---KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp SCEEEEEE-----------ESS---CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCEEEEEc-----------ccC---CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 33322111 110 1124789999999987777 56899999998654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.3e-08 Score=83.50 Aligned_cols=138 Identities=13% Similarity=0.048 Sum_probs=95.5
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-EEeeeeec------cCCCcceEEEEECC-CCCEEEEEe-CCCe
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILA------KSLRWTVTDTSLSP-DQRHLVYAS-MSPI 192 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~------~~~~~~v~~~~~sp-~~~~l~~~~-~d~~ 192 (279)
++......++++|+|+++++...+++|++||..... .+..+... ..+......++++| ++.++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 455678999999999988988889999999986542 22221100 23334688999999 788888876 6899
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
|++||. ++............ .....++-.....++++|+ +.++++...++.|++||..+|+.+.++.
T Consensus 168 I~~~~~-~g~~~~~~~~~g~~------~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~ 235 (329)
T 3fvz_A 168 IVQFSP-SGKFVTQWGEESSG------SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK 235 (329)
T ss_dssp EEEECT-TSCEEEEECEECCS------SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EEEEcC-CCCEEEEeccCCCC------CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence 999994 45443221110000 0000012235889999999 7777787888999999999899988884
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-08 Score=83.67 Aligned_cols=140 Identities=9% Similarity=0.066 Sum_probs=96.7
Q ss_pred CCCCCeEEEEECC-CCCEEEEEe-CCCcEEEEEcCCCeEEeeeeecc-------CCCcceEEEEECCC-CCEEEEEeCCC
Q 023642 122 QTTSRAYVSQFSA-DGSLFVAGF-QASQIRIYDVERGWKIQKDILAK-------SLRWTVTDTSLSPD-QRHLVYASMSP 191 (279)
Q Consensus 122 ~h~~~V~~~~~sp-d~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~-~~~l~~~~~d~ 191 (279)
++......++++| ++.++++.+ .++.|++||. .+..+....... .+-.....++++|+ ++++++...++
T Consensus 140 ~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~ 218 (329)
T 3fvz_A 140 NHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENG 218 (329)
T ss_dssp TCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTT
T ss_pred cccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCC
Confidence 4556789999999 888888886 6899999994 454444321110 12234889999998 67777777889
Q ss_pred eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec------CCCEEEEecCCCeEEEEECCCCeEEEEE
Q 023642 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST------DGRELVAGSSDDCIYVYDLEANKLSLRI 265 (279)
Q Consensus 192 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp------~g~~l~t~s~d~~i~vwd~~~~~~~~~~ 265 (279)
.|++||..+++........ .+...+..++|+| +|+.+++...+..|++||..+++.+..+
T Consensus 219 ~I~~~~~~~G~~~~~~~~~--------------~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 219 RIQCFKTDTKEFVREIKHA--------------SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp EEEEEETTTCCEEEEECCT--------------TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCcEEEEEecc--------------ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence 9999999877764332111 1233678889998 4443333344568999999999999888
Q ss_pred e---CCCcceeEEE
Q 023642 266 L---AHTVNIALWI 276 (279)
Q Consensus 266 ~---~h~~~v~~v~ 276 (279)
. ++...+..+.
T Consensus 285 ~~~~~~~~~p~~ia 298 (329)
T 3fvz_A 285 KPVRKHFDMPHDIV 298 (329)
T ss_dssp CCSSSCCSSEEEEE
T ss_pred cCCCCccCCeeEEE
Confidence 4 5555555554
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=3.2e-08 Score=80.57 Aligned_cols=129 Identities=10% Similarity=0.153 Sum_probs=94.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
+...+..++++|+|+++++...++.|.+||.. +...... ....+...+.+++++|+|+++++...++.|++||.....
T Consensus 119 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~ 196 (286)
T 1q7f_A 119 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKF-GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY 196 (286)
T ss_dssp TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE-ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE
T ss_pred cCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEe-CCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCE
Confidence 45678999999999988888888999999965 4333332 112344468999999999988887889999999985432
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC-eEEEEECCCCeEEEEEeCCC
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLSLRILAHT 269 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~-~i~vwd~~~~~~~~~~~~h~ 269 (279)
...+. .. ++...+..++++|+|+++++...++ .|.+||. +++.+..+..+.
T Consensus 197 ~~~~~------------~~---g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~ 248 (286)
T 1q7f_A 197 LRQIG------------GE---GITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV 248 (286)
T ss_dssp EEEES------------CT---TTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS
T ss_pred EEEEc------------cC---CccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC
Confidence 22111 00 1223688999999999888887776 9999995 577777776554
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-08 Score=82.54 Aligned_cols=127 Identities=15% Similarity=0.086 Sum_probs=88.2
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC-CCcceEEEEECCCCCEEEEEe-------
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSLSPDQRHLVYAS------- 188 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~------- 188 (279)
...+..+...+.+++++|+|+++++...++.|.+||..+++.......... ....+.+++++|+|+++++.+
T Consensus 61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~ 140 (296)
T 3e5z_A 61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKP 140 (296)
T ss_dssp EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCG
T ss_pred eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccc
Confidence 444666778899999999999888877788999999987754322111111 122467899999999888732
Q ss_pred ----------CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC-
Q 023642 189 ----------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE- 257 (279)
Q Consensus 189 ----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~- 257 (279)
..+.|..++.. ++...... +......++|+|+|+.|++.+.++.|++||+.
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-----------------~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~ 202 (296)
T 3e5z_A 141 EEGYGGEMELPGRWVFRLAPD-GTLSAPIR-----------------DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA 202 (296)
T ss_dssp GGSSCCCCCSSSCEEEEECTT-SCEEEEEC-----------------CCSSEEEEEECTTSCEEEEETTTTEEEEEEECS
T ss_pred cccccccccCCCcEEEEECCC-CCEEEeec-----------------CCCCCccEEECCCCCEEEEeCCCCeEEEEEECC
Confidence 13456666655 44322111 22367889999999998777888999999997
Q ss_pred CCeE
Q 023642 258 ANKL 261 (279)
Q Consensus 258 ~~~~ 261 (279)
+++.
T Consensus 203 ~g~~ 206 (296)
T 3e5z_A 203 RGET 206 (296)
T ss_dssp SSCE
T ss_pred CCcC
Confidence 4544
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=9.4e-09 Score=94.80 Aligned_cols=149 Identities=11% Similarity=-0.041 Sum_probs=96.6
Q ss_pred eEEEEECCCCCEEEEEeCCCc----------------EEEEEcCCCeEEe-eeeeccCCCcceEEEEECCCCCEEEEEeC
Q 023642 127 AYVSQFSADGSLFVAGFQASQ----------------IRIYDVERGWKIQ-KDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (279)
Q Consensus 127 V~~~~~spd~~~l~s~~~d~~----------------i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 189 (279)
+..++|+|||+.|+.++.++. |++|++.++.... .......+...+..+.|+|||++|+..+.
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~ 252 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR 252 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence 678999999999999888765 9999998875211 11122334556889999999999887764
Q ss_pred -----CCeEEEEECCC------C--ceeeeeccccccc--------eeEEeeCCC------------C----------Cc
Q 023642 190 -----SPIVHIVDVGS------G--TMESLANVTEIHD--------GLDFSAADD------------G----------GY 226 (279)
Q Consensus 190 -----d~~i~i~d~~~------~--~~~~~~~~~~~~~--------~~~~~~~~~------------~----------~~ 226 (279)
+..+++||+.+ + ....+........ .+.+....+ . .|
T Consensus 253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 332 (710)
T 2xdw_A 253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE 332 (710)
T ss_dssp CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred ccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCC
Confidence 56899999976 4 2222221111100 011111100 0 11
Q ss_pred c--ccEEEEEEecCCCEEEEecCCC--eEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 227 S--FGIFSLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 227 ~--~~v~~~~~sp~g~~l~t~s~d~--~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
. ..+..++|++++.++++...++ .|++||+.+|+.+..+..+...|..+
T Consensus 333 ~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~ 385 (710)
T 2xdw_A 333 HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGY 385 (710)
T ss_dssp CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEE
T ss_pred CCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEE
Confidence 1 2567788987777888888787 47778887788888888776555544
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-08 Score=82.01 Aligned_cols=151 Identities=9% Similarity=-0.004 Sum_probs=107.1
Q ss_pred ccccceEeeeeecCCCCceeeCCC-CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 101 AADCCHMLSRYLPVNGPWPVDQTT-SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~l~~h~-~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
+.+..+.+|+..+.+..+.+..+. ..+.+++++|+|++|+ +.++.|..||. +++.+..... .....+.++.+.|
T Consensus 12 ~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~--~~~~~~~~~~~~~ 86 (276)
T 3no2_A 12 SGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA--PAGCEMQTARILP 86 (276)
T ss_dssp TTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC--CTTCEEEEEEECT
T ss_pred CCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC--CCCccccccEECC
Confidence 345666666654555555666655 5788999999999988 45678999999 7877766432 2234688999999
Q ss_pred CCCEEEEEeC-CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 180 DQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 180 ~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
+|+++++.+. ++.+..+|. +|+........... .++......+++.++|+++++...++.|..||..
T Consensus 87 dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~----------~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 87 DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI----------ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC----------SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC----------CcccccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence 9999999887 778888886 55543222211000 0111234556789999999999999999999998
Q ss_pred CeEEEEEeCC
Q 023642 259 NKLSLRILAH 268 (279)
Q Consensus 259 ~~~~~~~~~h 268 (279)
|+.+-++..+
T Consensus 155 G~~~w~~~~~ 164 (276)
T 3no2_A 155 GQLLNSVKLS 164 (276)
T ss_dssp SCEEEEEECS
T ss_pred CCEEEEEECC
Confidence 9999888764
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-08 Score=82.44 Aligned_cols=126 Identities=11% Similarity=0.071 Sum_probs=92.5
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC----CeEE
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS----PIVH 194 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~i~ 194 (279)
.+..+...+.+++|+|++++++++..++.|.+||..+++..... ..+...+.+++++|+|+++++...+ +.|.
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF---VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE---ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe---eCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 45667778899999999998888888999999999887543321 1344579999999999988887766 6899
Q ss_pred EEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC------CCeEEEEECCCCeE
Q 023642 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKL 261 (279)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~------d~~i~vwd~~~~~~ 261 (279)
+||..++.......... ....+.+++++|+|+++++... .+.|..+|..+++.
T Consensus 116 ~~d~~~~~~~~~~~~~~--------------~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~ 174 (333)
T 2dg1_A 116 AATENGDNLQDIIEDLS--------------TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV 174 (333)
T ss_dssp EECTTSCSCEEEECSSS--------------SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE
T ss_pred EEeCCCCEEEEEEccCc--------------cCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE
Confidence 99998876542211000 1236889999999998877654 35677777665544
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.7e-09 Score=97.96 Aligned_cols=135 Identities=15% Similarity=0.150 Sum_probs=90.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCe-----
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI----- 192 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~----- 192 (279)
|...+..++|||||++|+.+..+ ..|++||+.+++.+.... +...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC----CCceeccEEEECC-CEEEEEEecCcccccc
Confidence 44468899999999999877554 369999999997654311 1112357899999 99988886553
Q ss_pred ---------EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC-----CeEEEEECCC
Q 023642 193 ---------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEA 258 (279)
Q Consensus 193 ---------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d-----~~i~vwd~~~ 258 (279)
|++|++.++...... .+... .+...+..+.|||||++|+..+.+ ..|++||+.+
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~l---------v~~~~---~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~ 303 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQP---------VFATP---ELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTN 303 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEE---------EECCT---TCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred cccCCCCCEEEEEECCCCchhCEE---------EeccC---CCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCC
Confidence 889998776531111 11111 122357899999999998876643 3899999987
Q ss_pred C--eEEEEEeCCCcceeE
Q 023642 259 N--KLSLRILAHTVNIAL 274 (279)
Q Consensus 259 ~--~~~~~~~~h~~~v~~ 274 (279)
+ ++...+..+...+..
T Consensus 304 ~~~~~~~~l~~~~~~~~~ 321 (741)
T 1yr2_A 304 GKIGPVTALIPDLKAQWD 321 (741)
T ss_dssp TEECCCEEEECSSSSCEE
T ss_pred CCCcccEEecCCCCceEE
Confidence 7 314556555544433
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-08 Score=85.68 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=71.7
Q ss_pred CCeEEEEECCCCCEEEEEeCC---C--cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC---------
Q 023642 125 SRAYVSQFSADGSLFVAGFQA---S--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--------- 190 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d---~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--------- 190 (279)
..+..++|||||++|+.++.+ + .|.+||+.+++.... ..+.. +..++|+|||+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l----~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI----LEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE----EEESE-EEEEEECTTSSEEEEEEECCCC------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEE----EcCCC-ccceeECCCCCEEEEEEccCCCcCCcEE
Confidence 568889999999999887654 2 488889988865432 12223 8999999999998887632
Q ss_pred ------------------CeEEEEECCCCce-eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC
Q 023642 191 ------------------PIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 191 ------------------~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d 248 (279)
..|++||+.+++. ..+.. . .+..+.|+||| +++++..+
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-----------~--------~~~~~~~spdg-~~~~~~~~ 190 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-----------P--------RFSSGIWHRDK-IVVNVPHR 190 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTTEEEEEEEE-----------E--------TTCEEEEETTE-EEEEEECC
T ss_pred EcccceeecCcccccCccceEEEEECCCCeEEeeecC-----------C--------CcccccCCCCe-EEEEEecc
Confidence 5789999988875 32211 0 35678999999 77777543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.1e-08 Score=83.90 Aligned_cols=115 Identities=15% Similarity=0.207 Sum_probs=83.6
Q ss_pred CCeEEEEECCCCCEEEEEe---------CCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC---C-
Q 023642 125 SRAYVSQFSADGSLFVAGF---------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---P- 191 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~- 191 (279)
..+..+++ ||++++... .++.|.+||+.+++... + ..+..++|+|||++|+..+.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~----l----~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF----I----ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE----E----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE----c----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 45677778 888887642 25689999999885422 1 358899999999999887753 3
Q ss_pred -eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC----------------------
Q 023642 192 -IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---------------------- 248 (279)
Q Consensus 192 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d---------------------- 248 (279)
.|.+||+.+++...+.. +.. +..++|+|||+.|+.++.+
T Consensus 85 ~~l~~~~~~~g~~~~l~~-----------------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 146 (347)
T 2gop_A 85 SEIWVADLETLSSKKILE-----------------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGF 146 (347)
T ss_dssp EEEEEEETTTTEEEEEEE-----------------ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC------
T ss_pred ceEEEEECCCCceEEEEc-----------------CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccc
Confidence 48888998877644322 112 7889999999998887632
Q ss_pred -----CeEEEEECCCCeEEEEEeC
Q 023642 249 -----DCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 249 -----~~i~vwd~~~~~~~~~~~~ 267 (279)
..|++||+.+++.+..+..
T Consensus 147 ~~~~~~~l~~~d~~~~~~~~~l~~ 170 (347)
T 2gop_A 147 FDGEKTTFWIFDTESEEVIEEFEK 170 (347)
T ss_dssp ---CEEEEEEEETTTTEEEEEEEE
T ss_pred ccCccceEEEEECCCCeEEeeecC
Confidence 5799999999887455543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-07 Score=84.97 Aligned_cols=160 Identities=12% Similarity=0.020 Sum_probs=103.7
Q ss_pred ccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC--CCeEEeeeeeccCCCcceEEEEEC--
Q 023642 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLS-- 178 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~s-- 178 (279)
+..+.+++.........+. ....+..+.|+|||+++++++.|+.|.+||+. +++.+..+.. ......++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~----G~~P~~ia~s~~ 250 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI----GSEARSIETSKM 250 (567)
T ss_dssp TTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC----CSEEEEEEECCS
T ss_pred CCeEEEEECCCCeEEEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec----CCCCceeEEccc
Confidence 4455555543332222233 23356789999999999999999999999996 6655554321 2246789999
Q ss_pred --CCCCEEEEEe-CCCeEEEEECCCCceeeeeccccc------------cceeEEeeCCC--------CC----------
Q 023642 179 --PDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEI------------HDGLDFSAADD--------GG---------- 225 (279)
Q Consensus 179 --p~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~------------~~~~~~~~~~~--------~~---------- 225 (279)
|||+++++++ .++++.++|..+.+.......... ...+..+.... .+
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~ 330 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 330 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred cCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCC
Confidence 7999987766 558999999988876544332110 00011110000 00
Q ss_pred ---------ccccEEEEEEecCCCEEEEec-CCCeEEEEECCCCeEEEEEeC
Q 023642 226 ---------YSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 226 ---------~~~~v~~~~~sp~g~~l~t~s-~d~~i~vwd~~~~~~~~~~~~ 267 (279)
.......+.|+|+|++|+++. .++.|.++|+.+++.+..+..
T Consensus 331 ~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v 382 (567)
T 1qks_A 331 NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT 382 (567)
T ss_dssp SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred ccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence 011344678999999987655 578999999999998887764
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-09 Score=92.36 Aligned_cols=140 Identities=14% Similarity=0.072 Sum_probs=87.9
Q ss_pred eEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 127 AYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 127 V~~~~~spd~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
+..++|||||++|+....+ ..|.+||+.+++.... ...+......+.|+|||++|+..+.++.+++||+.+++.
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l---~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~ 114 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL---TEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE 114 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC---CCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe---ecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc
Confidence 6778999999998877543 4788899998864332 122222233478999999999999999999999998876
Q ss_pred eeeeccccccceeEEeeCCC------CCcc--ccEEEEEEecCCCEEEEe-----cCCCeEEEEECCCCeEEEEEeCCCc
Q 023642 204 ESLANVTEIHDGLDFSAADD------GGYS--FGIFSLKFSTDGRELVAG-----SSDDCIYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~------~~~~--~~v~~~~~sp~g~~l~t~-----s~d~~i~vwd~~~~~~~~~~~~h~~ 270 (279)
..+...... +.+.+. .... .....+.|+|+++.++.. ..+..|++||+.+++...... +..
T Consensus 115 ~~~~~~~~~-----~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~-~~~ 188 (396)
T 3c5m_A 115 QVIYTVDEE-----WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ-DTA 188 (396)
T ss_dssp EEEEECCTT-----EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-ESS
T ss_pred EEEEecccc-----cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc-CCc
Confidence 544332111 100000 0000 000013578888877654 356689999999887655443 444
Q ss_pred ceeEE
Q 023642 271 NIALW 275 (279)
Q Consensus 271 ~v~~v 275 (279)
.+..+
T Consensus 189 ~~~~~ 193 (396)
T 3c5m_A 189 WLGHP 193 (396)
T ss_dssp CEEEE
T ss_pred ccccc
Confidence 44443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.4e-07 Score=77.00 Aligned_cols=145 Identities=16% Similarity=0.097 Sum_probs=91.0
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCC----CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC------CC
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM------SP 191 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------d~ 191 (279)
.+...+.+++|+|+++++++...+ +.|.+||..++..... .........+.+++++|+|+++++... .+
T Consensus 84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 162 (333)
T 2dg1_A 84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI-IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 162 (333)
T ss_dssp CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE-ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEE-EccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence 567889999999999988887766 6899999987754321 111123456899999999988877654 35
Q ss_pred eEEEEECCCCceeeeeccccccceeEEeeCCC-------------------CCc---------------cccEEEEEEec
Q 023642 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADD-------------------GGY---------------SFGIFSLKFST 237 (279)
Q Consensus 192 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~---------------~~~v~~~~~sp 237 (279)
.|..+|..+++...+........++.+.+++. .+. ...+..+++++
T Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~ 242 (333)
T 2dg1_A 163 GVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS 242 (333)
T ss_dssp EEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT
T ss_pred eEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECC
Confidence 67777766554432211000000111111000 000 02466788888
Q ss_pred CCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 238 DGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 238 ~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
+|+++++...++.|.+||. .++.+..+..+
T Consensus 243 ~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~ 272 (333)
T 2dg1_A 243 DDNLYVAMYGQGRVLVFNK-RGYPIGQILIP 272 (333)
T ss_dssp TCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred CCCEEEEEcCCCEEEEECC-CCCEEEEEEcC
Confidence 8888777767788999988 46677777644
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.95 E-value=7.1e-08 Score=78.58 Aligned_cols=156 Identities=17% Similarity=0.180 Sum_probs=107.4
Q ss_pred cCCCCee-eccccceEeeeeecCCCCceeeCC-CCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCeEEeeeeecc---
Q 023642 93 YSGRGRF-SAADCCHMLSRYLPVNGPWPVDQT-TSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAK--- 166 (279)
Q Consensus 93 ~~~~~~~-~~~d~~~~~~~~~~~~~~~~l~~h-~~~V~~~~~spd~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~--- 166 (279)
+.++|.+ .+.+..+..++. .....+.+..+ ...+.++.+.|+|+.+++.+. +++|..+|. +|+.+.......
T Consensus 44 ~~pdG~ilvs~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~ 121 (276)
T 3no2_A 44 ATKAGEILFSYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIE 121 (276)
T ss_dssp ECTTSCEEEECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCS
T ss_pred ECCCCCEEEeCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCC
Confidence 3444443 233334444443 33333445544 357889999999999999887 778888876 565555432211
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
.+......+++.++|+++++...++.|..||.. |+........ ..+.++.+.++|..+++++
T Consensus 122 ~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-----------------~~~~~~~~~~~g~~~v~~~ 183 (276)
T 3no2_A 122 RPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-----------------GTPFSSAFLDNGDCLVACG 183 (276)
T ss_dssp SGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-----------------SCCCEEEECTTSCEEEECB
T ss_pred cccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-----------------CCccceeEcCCCCEEEEeC
Confidence 122345667889999999999999999999998 7764332211 1455677889999999988
Q ss_pred CCCeEEEEECCCCeEEEEEeCC
Q 023642 247 SDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 247 ~d~~i~vwd~~~~~~~~~~~~h 268 (279)
.++.|..+|..+|+.+-++..+
T Consensus 184 ~~~~v~~~d~~tG~~~w~~~~~ 205 (276)
T 3no2_A 184 DAHCFVQLNLESNRIVRRVNAN 205 (276)
T ss_dssp TTSEEEEECTTTCCEEEEEEGG
T ss_pred CCCeEEEEeCcCCcEEEEecCC
Confidence 8889999999999999888743
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.7e-08 Score=91.58 Aligned_cols=149 Identities=12% Similarity=-0.006 Sum_probs=93.6
Q ss_pred ccCCCCeeec--------cccceEeeeeecCCCCceeeCCCCCe--EEEEECCCCCEEEEEeCCCc-------------E
Q 023642 92 NYSGRGRFSA--------ADCCHMLSRYLPVNGPWPVDQTTSRA--YVSQFSADGSLFVAGFQASQ-------------I 148 (279)
Q Consensus 92 ~~~~~~~~~~--------~d~~~~~~~~~~~~~~~~l~~h~~~V--~~~~~spd~~~l~s~~~d~~-------------i 148 (279)
.++++|++.. .+..+.+|++...... ...+...+ ..++|+|||+.|+.++.|.. |
T Consensus 127 ~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~--~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v 204 (695)
T 2bkl_A 127 AVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS--KVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTI 204 (695)
T ss_dssp EECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC--SSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEE
T ss_pred EECCCCCEEEEEECCCCCceEEEEEEECCCCCCc--CCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEE
Confidence 4678877522 1245666665443321 02222223 68999999999999988776 9
Q ss_pred EEEEcCCCeEE-eeeeeccCCCcceEEEEECCCCCEEEEEeCCC----eEEEEECCCCceeeeeccccccceeEEeeCCC
Q 023642 149 RIYDVERGWKI-QKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----IVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (279)
Q Consensus 149 ~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (279)
++|++.++... ..+.....+...+..+.|+|||++|+..+.++ .|++||..++....+..
T Consensus 205 ~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~--------------- 269 (695)
T 2bkl_A 205 RYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK--------------- 269 (695)
T ss_dssp EEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE---------------
T ss_pred EEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec---------------
Confidence 99999987521 11122334555788999999999998877665 67777765555433221
Q ss_pred CCccccEEEEEEecCCCEEEEec---CCCeEEEEECCCCe
Q 023642 224 GGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLEANK 260 (279)
Q Consensus 224 ~~~~~~v~~~~~sp~g~~l~t~s---~d~~i~vwd~~~~~ 260 (279)
+...+....+ ++|.+++... .++.|.+||+.+++
T Consensus 270 --~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 270 --GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp --CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred --CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence 1113445555 5666444443 25789999998765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.92 E-value=5e-08 Score=82.61 Aligned_cols=126 Identities=9% Similarity=-0.070 Sum_probs=86.8
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcCCCeEE-eeeeeccC-----C---CcceEEEEECCCCCEEEEEeC-----------C
Q 023642 131 QFSADGSLFVAGFQASQIRIYDVERGWKI-QKDILAKS-----L---RWTVTDTSLSPDQRHLVYASM-----------S 190 (279)
Q Consensus 131 ~~spd~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~-----~---~~~v~~~~~sp~~~~l~~~~~-----------d 190 (279)
.++|++..++..+.++.|.++|+...... ........ . ......++|+|+++.++.+.. .
T Consensus 206 ~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~ 285 (361)
T 2oiz_A 206 APALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPA 285 (361)
T ss_dssp CCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCC
T ss_pred EecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCC
Confidence 34577777877888899999998754321 11100000 0 011223789999888776543 3
Q ss_pred CeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC--eEEEEEeCC
Q 023642 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLRILAH 268 (279)
Q Consensus 191 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~--~~~~~~~~h 268 (279)
..|.+||+.+++....... +. +.+++|+|||++|++++. ++|.+||..++ +.+.++..+
T Consensus 286 ~~v~viD~~t~~~v~~i~~----------------~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~ 346 (361)
T 2oiz_A 286 AEIWVMDTKTKQRVARIPG----------------RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA 346 (361)
T ss_dssp SEEEEEETTTTEEEEEEEC----------------TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS
T ss_pred ceEEEEECCCCcEEEEEec----------------CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC
Confidence 5899999999887543321 22 788999999999998887 99999999999 999998655
Q ss_pred CcceeEE
Q 023642 269 TVNIALW 275 (279)
Q Consensus 269 ~~~v~~v 275 (279)
....+.+
T Consensus 347 G~~P~~~ 353 (361)
T 2oiz_A 347 AEASLQV 353 (361)
T ss_dssp CSSEEEE
T ss_pred CCCcEEE
Confidence 4444444
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.4e-08 Score=79.28 Aligned_cols=140 Identities=8% Similarity=0.017 Sum_probs=96.7
Q ss_pred ceeeCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~ 196 (279)
..+..+.....+++|+|+++ +++++..++.|..||..++ ... +..+...+.+++++|+|+++++...++.|.+|
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~---~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP---EMHPSHHQNGHCLNKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE---EESSCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE---EECCCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence 44666677889999999998 7788888999999999987 222 22345578999999999988887778899999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEE----ec-------------CCCeEEEEECCCC
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA----GS-------------SDDCIYVYDLEAN 259 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t----~s-------------~d~~i~vwd~~~~ 259 (279)
|..+++...+....... ....+..++++|+|+++++ ++ ..+.|..++.. +
T Consensus 96 d~~~g~~~~~~~~~~~~------------~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (296)
T 3e5z_A 96 REPGGEWESIADSFEGK------------KLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G 162 (296)
T ss_dssp CSTTCCEEEEECEETTE------------ECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S
T ss_pred cCCCCcEEEEeeccCCC------------CCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C
Confidence 99888764332211000 1124678999999998887 33 13456666655 4
Q ss_pred eEEEEEeCCCcceeEEE
Q 023642 260 KLSLRILAHTVNIALWI 276 (279)
Q Consensus 260 ~~~~~~~~h~~~v~~v~ 276 (279)
+ +..+..+....+.+.
T Consensus 163 ~-~~~~~~~~~~~~gi~ 178 (296)
T 3e5z_A 163 T-LSAPIRDRVKPNGLA 178 (296)
T ss_dssp C-EEEEECCCSSEEEEE
T ss_pred C-EEEeecCCCCCccEE
Confidence 4 334444444445443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.8e-08 Score=85.51 Aligned_cols=141 Identities=13% Similarity=0.094 Sum_probs=92.3
Q ss_pred ceEeeeeecCCCCceeeCCCCCeEEEEECC-CCCEEEEEeCC------CcEEEEEcCCCeEEeeeeeccCC-CcceEEEE
Q 023642 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSL-RWTVTDTS 176 (279)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-d~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~ 176 (279)
.+.+|++... ....+..+...+..+.|+| +++.|+..+.+ ..|.+||+..+..... .... ...+..++
T Consensus 169 ~l~~~d~~~g-~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l---~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 169 RLIKVDIETG-ELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI---KEHAEGESCTHEF 244 (396)
T ss_dssp EEEEEETTTC-CEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEES---SCCCTTEEEEEEE
T ss_pred eEEEEECCCC-cEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEe---eccCCCccccceE
Confidence 4444444322 2233556778899999999 88877766543 4688899876643221 1111 33588899
Q ss_pred ECCCCCEEEEEeCC-----CeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec-CCCEEEEec----
Q 023642 177 LSPDQRHLVYASMS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGS---- 246 (279)
Q Consensus 177 ~sp~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~t~s---- 246 (279)
|+|||++|+..+.+ +.|++||+.+++...+.... ... +.|+| ||+++++++
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~------------------~~~-~~~s~~dg~~l~~~~~~~p 305 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP------------------PCS-HLMSNFDGSLMVGDGCDAP 305 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC------------------SEE-EEEECSSSSEEEEEECCC-
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC------------------CCC-CCccCCCCceEEEecCCcc
Confidence 99999988776543 45999999988764332110 122 88999 999888754
Q ss_pred ------------CCCeEEEEECCCCeEEEEEeCCC
Q 023642 247 ------------SDDCIYVYDLEANKLSLRILAHT 269 (279)
Q Consensus 247 ------------~d~~i~vwd~~~~~~~~~~~~h~ 269 (279)
.+..|++||+.+++. ..+..+.
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~ 339 (396)
T 3c5m_A 306 VDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHS 339 (396)
T ss_dssp ---------CCCCCCEEEEEETTTTBC-CEEEECC
T ss_pred eeeccccccccCCCCcEEEEecccCce-EEccCCC
Confidence 346899999988764 3444443
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.84 E-value=2.4e-06 Score=70.06 Aligned_cols=155 Identities=9% Similarity=0.017 Sum_probs=94.7
Q ss_pred eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeecc-CCCcceEEEEECCCCCEEEEEeCC---------
Q 023642 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASMS--------- 190 (279)
Q Consensus 121 ~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d--------- 190 (279)
......+.+++++|+|+++++. +..|.+||..+++......... .....+.+++++|+|+++++....
T Consensus 50 ~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 50 VTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLER 127 (297)
T ss_dssp EECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCT
T ss_pred EeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccC
Confidence 3456789999999999965554 5689999998875432211111 122358899999999977754321
Q ss_pred CeEEEEECCC-CceeeeeccccccceeEEeeCCC--------------------C-------------CccccEEEEEEe
Q 023642 191 PIVHIVDVGS-GTMESLANVTEIHDGLDFSAADD--------------------G-------------GYSFGIFSLKFS 236 (279)
Q Consensus 191 ~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~--------------------~-------------~~~~~v~~~~~s 236 (279)
....||.+.. +.............++.+.+++. . .+......++++
T Consensus 128 ~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d 207 (297)
T 3g4e_A 128 HQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID 207 (297)
T ss_dssp TCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB
T ss_pred CCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC
Confidence 2234444332 23221111111112222222211 0 012346778889
Q ss_pred cCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 237 TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 237 p~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
++|++.++...++.|..||..+++.+..+..+...++++..
T Consensus 208 ~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f 248 (297)
T 3g4e_A 208 AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCF 248 (297)
T ss_dssp TTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEE
T ss_pred CCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEE
Confidence 99988777777788999999999999999877666776653
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-07 Score=85.44 Aligned_cols=112 Identities=17% Similarity=0.007 Sum_probs=86.7
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECC--CCceeeeecccc
Q 023642 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG--SGTMESLANVTE 211 (279)
Q Consensus 134 pd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~ 211 (279)
|.+.++++...+++|.++|..+++.+..+. ....+..+.|+|||+++++++.|+.|.+||+. +++.......
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~----~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-- 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLD----TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-- 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEE----CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEe----CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--
Confidence 445567777889999999999997766532 22246789999999999999999999999996 5554322111
Q ss_pred ccceeEEeeCCCCCccccEEEEEEe----cCCCEEEEecC-CCeEEEEECCCCeEEEEEe
Q 023642 212 IHDGLDFSAADDGGYSFGIFSLKFS----TDGRELVAGSS-DDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~v~~~~~s----p~g~~l~t~s~-d~~i~vwd~~~~~~~~~~~ 266 (279)
. .....++|+ |||++++++.. +++|.|+|..+.+.++++.
T Consensus 239 G---------------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~ 283 (567)
T 1qks_A 239 G---------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 283 (567)
T ss_dssp C---------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred C---------------CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEe
Confidence 0 145789999 79999887775 6899999999999998876
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-07 Score=79.04 Aligned_cols=123 Identities=11% Similarity=0.057 Sum_probs=88.9
Q ss_pred CeEEEEECCCCCEEEEEeCC----------CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 023642 126 RAYVSQFSADGSLFVAGFQA----------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (279)
....++++|+|++++++..+ +.|.+||..+++...... . ........++|+|+++.|+.+.. .|.+
T Consensus 173 ~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~-~-~~g~~p~~la~~~d~~~lyv~~~--~v~~ 248 (328)
T 3dsm_A 173 QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK-F-KLGDWPSEVQLNGTRDTLYWINN--DIWR 248 (328)
T ss_dssp CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE-C-CTTCCCEEEEECTTSCEEEEESS--SEEE
T ss_pred CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe-c-CCCCCceeEEEecCCCEEEEEcc--EEEE
Confidence 35678999999987777654 789999999886554422 1 11235889999999999888765 8999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec-CCCEEEEe----cCCCeEEEEECCCCeEEEEEeC
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAG----SSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~t~----s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
||..+++......... .......++++| ++..+++. ..++.|.+||.. ++.+.+++.
T Consensus 249 ~d~~t~~~~~~~~~~~--------------~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 249 MPVEADRVPVRPFLEF--------------RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp EETTCSSCCSSCSBCC--------------CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred EECCCCceeeeeeecC--------------CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 9998877531110000 012678999999 56666666 568899999998 898888864
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.80 E-value=6.7e-08 Score=82.20 Aligned_cols=126 Identities=11% Similarity=0.006 Sum_probs=92.5
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.++.+.+|+.........+..|...+.++.+.+.. ++++..||.|.+||+..+.... +...|++++|+|
T Consensus 102 v~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSp 172 (388)
T 1xip_A 102 VSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTN 172 (388)
T ss_dssp EEESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECS
T ss_pred EEcCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcC
Confidence 3466778888877666556677888889988877643 8889999999999999875432 223699999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCce--eeee-ccccccceeEEeeCCCCCccccEEEEEEecCCCEEEE
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTM--ESLA-NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t 244 (279)
+| ++.+..||.+++|+..++.. .... ..... . ...+|...|.++.|.+++.++++
T Consensus 173 kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~------~--~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 173 SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSEL------E--ELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHH------H--TSCTTTSEEEEEEESSSSEEEEE
T ss_pred Cc--eEEEEcCCcEEEEcCCCccccccceecCCccc------c--cccCCCeeEEEEEEecCCeEEEE
Confidence 99 77899999999999887774 2111 11000 0 00014468999999999999886
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.78 E-value=2.1e-07 Score=74.76 Aligned_cols=118 Identities=11% Similarity=0.015 Sum_probs=88.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
...+.+++++|+|+++++...++.|.+||......... .......+.+++++|+|.++++...++.|.+||..+...
T Consensus 149 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~---~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 149 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL---PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS 225 (270)
T ss_dssp CCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC---CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred CCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee---cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence 35678899999999878777788999999887643322 112224688999999998777777788999999876543
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCe
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~ 260 (279)
..... .+...+.+++++|+|+.+++...++.|+++++...+
T Consensus 226 ~~~~~----------------~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 226 TVLPF----------------TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EECCC----------------CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred eeecc----------------CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 22110 011368899999999988888889999999987543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.75 E-value=5.4e-07 Score=72.38 Aligned_cols=119 Identities=8% Similarity=-0.030 Sum_probs=87.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
...+..++++|+|+++++...++.|.+|+..+...... .......+.+++++|+|+++++...++.|.+||..+...
T Consensus 107 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~---~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 107 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL---PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC---CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee---ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 36789999999999888877788999997655432211 112223578899999999777777788999999887654
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeE
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~ 261 (279)
...... +...+.+++++++|..+++...++.|.+||..+...
T Consensus 184 ~~~~~~----------------~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 184 VVLPFT----------------DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS 225 (270)
T ss_dssp EECCCS----------------SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred Eeeccc----------------CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence 321110 113678999999998887777788999999876543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.73 E-value=7.7e-07 Score=74.19 Aligned_cols=144 Identities=8% Similarity=-0.044 Sum_probs=94.6
Q ss_pred cceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeecc--CCCcceEEEEECCCC
Q 023642 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK--SLRWTVTDTSLSPDQ 181 (279)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~ 181 (279)
+.+.+++.........+. .......++++|+++.+++...++.|.+||..+++......... +.......+++ ++
T Consensus 64 ~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~ 140 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YG 140 (328)
T ss_dssp TEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ET
T ss_pred CEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--EC
Confidence 445555544333323343 34678899999998555555488999999999987654432211 01113556777 44
Q ss_pred CEEEEEe--CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC----------C
Q 023642 182 RHLVYAS--MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----------D 249 (279)
Q Consensus 182 ~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d----------~ 249 (279)
..|+.++ .++.|.++|..+++........ .....++++|+|++++++..+ +
T Consensus 141 ~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-----------------~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~ 203 (328)
T 3dsm_A 141 KYVYVNCWSYQNRILKIDTETDKVVDELTIG-----------------IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAP 203 (328)
T ss_dssp TEEEEEECTTCCEEEEEETTTTEEEEEEECS-----------------SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCC
T ss_pred CEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-----------------CCccceEEcCCCCEEEEECCCccCCccccCCc
Confidence 5555444 4889999999998764432211 134568899999988776654 7
Q ss_pred eEEEEECCCCeEEEEEeC
Q 023642 250 CIYVYDLEANKLSLRILA 267 (279)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~ 267 (279)
.|.++|..+++...++..
T Consensus 204 ~v~~id~~t~~v~~~~~~ 221 (328)
T 3dsm_A 204 SLYRIDAETFTVEKQFKF 221 (328)
T ss_dssp EEEEEETTTTEEEEEEEC
T ss_pred eEEEEECCCCeEEEEEec
Confidence 899999999998877753
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-07 Score=86.94 Aligned_cols=135 Identities=19% Similarity=0.243 Sum_probs=88.8
Q ss_pred CCCCCeEEEEECCCCCEEEEEe-----CCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCC-----
Q 023642 122 QTTSRAYVSQFSADGSLFVAGF-----QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----- 191 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----- 191 (279)
+|...+..++|||||++|+.+. ....|++||+.+++.+.... ... ....++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--KDV--KFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EEE--ESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--CCc--eeccEEEe-CCCEEEEEEecCccccc
Confidence 4566789999999999988542 23579999999997654311 111 13567899 999999888774
Q ss_pred --------eEEEEECCCCceeeeeccccccceeEEeeCCCCC-ccccEEEEEEecCCCEEEEec----CCCeEEEEECCC
Q 023642 192 --------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG-YSFGIFSLKFSTDGRELVAGS----SDDCIYVYDLEA 258 (279)
Q Consensus 192 --------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~t~s----~d~~i~vwd~~~ 258 (279)
.|++|++.++....... +... . |......+.|+|||++|+... .+..|+++|+.+
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v---------~~~~---~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~ 268 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLV---------FGAI---PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQ 268 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEE---------ESCS---GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTS
T ss_pred ccccCCCcEEEEEECCCCcccceEE---------EecC---CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCC
Confidence 49999988765311110 1000 0 122567899999999886432 235899999977
Q ss_pred Ce-EEEEEeCCCccee
Q 023642 259 NK-LSLRILAHTVNIA 273 (279)
Q Consensus 259 ~~-~~~~~~~h~~~v~ 273 (279)
+. ....+..+.....
T Consensus 269 ~~~~~~~l~~~~~~~~ 284 (693)
T 3iuj_A 269 ENAPLLTVQGDLDADV 284 (693)
T ss_dssp TTCCCEEEECSSSSCE
T ss_pred CCCceEEEeCCCCceE
Confidence 63 4455555554443
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.70 E-value=8.8e-07 Score=82.04 Aligned_cols=128 Identities=16% Similarity=0.100 Sum_probs=82.7
Q ss_pred EEEEECCCCCEEEEEeCCCc--------------EEEEEcCCCeEEe-eeeeccCCCcceEEEEECCCCCEEEEEeCCC-
Q 023642 128 YVSQFSADGSLFVAGFQASQ--------------IRIYDVERGWKIQ-KDILAKSLRWTVTDTSLSPDQRHLVYASMSP- 191 (279)
Q Consensus 128 ~~~~~spd~~~l~s~~~d~~--------------i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~- 191 (279)
..++|+|| +.|+.++.++. |++|++.++.... .+.....+...+..+.|+|||++|+..+.++
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 290 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT 290 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence 57899999 99988876654 8999998764211 1112233334588999999999988777543
Q ss_pred ----eEEEEECCCC--c-eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC----CCeEEEEECCCC-
Q 023642 192 ----IVHIVDVGSG--T-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS----DDCIYVYDLEAN- 259 (279)
Q Consensus 192 ----~i~i~d~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~----d~~i~vwd~~~~- 259 (279)
.|++||+.++ + ...+.. +...+... ++|+|+.|+..+. +..|.+||+.++
T Consensus 291 ~~~~~l~~~d~~~~~~~~~~~l~~-----------------~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 352 (741)
T 1yr2_A 291 DPVNTVHVARVTNGKIGPVTALIP-----------------DLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST 352 (741)
T ss_dssp CSCCEEEEEEEETTEECCCEEEEC-----------------SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred CCcceEEEEECCCCCCcccEEecC-----------------CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence 8999999876 3 222211 11123333 3488988887664 346999999874
Q ss_pred -eEEEEEeCCCcceeE
Q 023642 260 -KLSLRILAHTVNIAL 274 (279)
Q Consensus 260 -~~~~~~~~h~~~v~~ 274 (279)
+....++.+...+..
T Consensus 353 ~~~~~l~~~~~~~l~~ 368 (741)
T 1yr2_A 353 PRFDTVVPESKDNLES 368 (741)
T ss_dssp CEEEEEECCCSSEEEE
T ss_pred cccEEEecCCCCeEEE
Confidence 444445555444433
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.69 E-value=6.4e-07 Score=75.98 Aligned_cols=123 Identities=15% Similarity=0.064 Sum_probs=88.3
Q ss_pred EECCCCCEEEEEeC-----CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe----------CCCeEEE
Q 023642 131 QFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHI 195 (279)
Q Consensus 131 ~~spd~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------~d~~i~i 195 (279)
...|+++.++.... ++.|.++|..+++.+..+.... .+ .++++|||++++.++ .++.|.+
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~---~P--~va~spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF---LP--NPVVADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS---SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC---CC--cEEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 44688988887765 6799999999998776643322 23 399999999987765 3678999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC--CCeEEEEECCCCeEEEEEeC
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~--d~~i~vwd~~~~~~~~~~~~ 267 (279)
||..+.+............ .. .-.....+.|+|||++++.+.. ++.|.++|+.+++.+.+++.
T Consensus 114 iD~~t~~v~~~I~v~~g~r---~~------~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v 178 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDAPR---FL------VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV 178 (386)
T ss_dssp ECTTTCCEEEEEEETTCCC---CC------BSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred EECCCCeEEEEEECCCccc---cc------cCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC
Confidence 9999988754332211000 00 0013456899999999887764 68999999999999998863
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.60 E-value=3.6e-06 Score=68.98 Aligned_cols=121 Identities=8% Similarity=0.036 Sum_probs=84.3
Q ss_pred CCCCCeEEEEEC----CCCCEEEEE-eCCCcEEEEEcC-CCeEEe--eeeeccCCC-cceEEEEECCCCCEEEEEeCCCe
Q 023642 122 QTTSRAYVSQFS----ADGSLFVAG-FQASQIRIYDVE-RGWKIQ--KDILAKSLR-WTVTDTSLSPDQRHLVYASMSPI 192 (279)
Q Consensus 122 ~h~~~V~~~~~s----pd~~~l~s~-~~d~~i~iwd~~-~~~~~~--~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~~ 192 (279)
.+......++|+ |+++.|+.+ ..++.|.+||+. .+.... .......+. ..+..++++++|+++++...++.
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 344557889999 999766544 567899999986 453211 111223333 56889999999999888888899
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEE-EEecCCCeEEEEECCC
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEA 258 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~t~s~d~~i~vwd~~~ 258 (279)
|.+||..+++....... +...+.+++|+|+|+.| ++...++.|..|++..
T Consensus 249 i~~~d~~~g~~~~~~~~----------------~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIRC----------------PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCBSCSEEEEC----------------SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCCcEeEEEeC----------------CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999986654222111 12378999999999955 4555678899999874
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-05 Score=65.60 Aligned_cols=122 Identities=11% Similarity=0.115 Sum_probs=88.7
Q ss_pred eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 023642 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (279)
Q Consensus 121 ~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~ 200 (279)
..+...+.+++++|+|+++++...++.|.+||.. +..... ........+.+++++|+|.++++...++.|..||..
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~--~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEY--PLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEE--ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEe--cCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 3455789999999999988877778899999988 543221 122234568999999999988887778899999986
Q ss_pred CceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEE
Q 023642 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (279)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~ 262 (279)
+...... .. . ....+..+++.|+|.++++...++.|.+||. +++..
T Consensus 87 g~~~~~~-~~---------~-----~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~ 132 (299)
T 2z2n_A 87 GIIKEYT-LP---------N-----PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR 132 (299)
T ss_dssp SCEEEEE-CS---------S-----TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred CcEEEEe-CC---------C-----cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence 3332111 00 0 1126889999999998888777889999998 55443
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-05 Score=65.21 Aligned_cols=133 Identities=8% Similarity=-0.058 Sum_probs=93.0
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~ 201 (279)
.....+..++++|++.++++...++.|..||. +++.... ........+.+++++|+|+++++...++.|.+||. ++
T Consensus 138 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~--~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g 213 (299)
T 2z2n_A 138 NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEF--KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SG 213 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE--ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC
T ss_pred CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEe--eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CC
Confidence 34567899999999988887777889999998 6644321 12233446889999999997777767889999999 66
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEE--eCCCcceeEE
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI--LAHTVNIALW 275 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~--~~h~~~v~~v 275 (279)
........ .+...+.+++++++|+.+++...++.|..||. +++. ..+ ..+...+.++
T Consensus 214 ~~~~~~~~---------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i 272 (299)
T 2z2n_A 214 EITEFKIP---------------TPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGI 272 (299)
T ss_dssp CEEEEECS---------------STTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEE
T ss_pred cEEEEECC---------------CCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceE
Confidence 54322110 02236889999999997777667789999998 4543 333 3344455544
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.56 E-value=6.4e-06 Score=67.50 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=91.5
Q ss_pred CCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeEEee-eeeccC-CCcceEEEEECCCCCEEEEEeCC---------
Q 023642 123 TTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQK-DILAKS-LRWTVTDTSLSPDQRHLVYASMS--------- 190 (279)
Q Consensus 123 h~~~V~~~~~spd-~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d--------- 190 (279)
+...+.+++++|+ ++++++.. ...|.+||.. ++.... ...... ....+.+++++|+|+++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 4567899999999 66555544 4589999998 654321 111111 12358899999999988776654
Q ss_pred ------CeEEEEECCCCceeeeeccccccceeEEe----eCC---------C-----------------------CCcc-
Q 023642 191 ------PIVHIVDVGSGTMESLANVTEIHDGLDFS----AAD---------D-----------------------GGYS- 227 (279)
Q Consensus 191 ------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~---------~-----------------------~~~~- 227 (279)
+.|..||.. ++............++.+. +++ . .++.
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 225 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE 225 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred cccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence 567777765 4332211100000111111 000 0 0111
Q ss_pred ccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 228 ~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
..+..++++++|+++++...++.|.+||..+++.+..+..+...+.++.
T Consensus 226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~ 274 (314)
T 1pjx_A 226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLH 274 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEE
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEE
Confidence 3467788899998888777788999999987777777766655565554
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.9e-06 Score=69.82 Aligned_cols=124 Identities=13% Similarity=-0.028 Sum_probs=83.7
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC-CCcceEEEEECCCCCEEEE----EeC---
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSLSPDQRHLVY----ASM--- 189 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~----~~~--- 189 (279)
..+..+...+..++++|+|+++++...++.|.+|+.+ +..........+ ....+.+++++|+|+++++ +..
T Consensus 79 ~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~ 157 (305)
T 3dr2_A 79 DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPS 157 (305)
T ss_dssp EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGG
T ss_pred EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccc
Confidence 4455667789999999999977776667899999986 533221111111 1124678999999998886 321
Q ss_pred ----------CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC------CeEEE
Q 023642 190 ----------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYV 253 (279)
Q Consensus 190 ----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d------~~i~v 253 (279)
.+.|..||..+++...+. .. .....++|+||++.|+.+... +.|++
T Consensus 158 ~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~-----------------~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~ 219 (305)
T 3dr2_A 158 QGCPADPELAHHSVYRLPPDGSPLQRMA-DL-----------------DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITA 219 (305)
T ss_dssp GSCCCCCSSSCEEEEEECSSSCCCEEEE-EE-----------------SSEEEEEECTTSSEEEEEECCC---CCCEEEE
T ss_pred cccccccccCCCeEEEEcCCCCcEEEEe-cC-----------------CCCcceEEcCCCCEEEEEecCCcCCCCCEEEE
Confidence 246777887666654322 00 146789999999987776554 68999
Q ss_pred EECCCCe
Q 023642 254 YDLEANK 260 (279)
Q Consensus 254 wd~~~~~ 260 (279)
|++..+.
T Consensus 220 ~~~~~~~ 226 (305)
T 3dr2_A 220 FAWRDGA 226 (305)
T ss_dssp EEEETTE
T ss_pred EEecCCC
Confidence 9987654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.53 E-value=5e-06 Score=68.10 Aligned_cols=123 Identities=11% Similarity=0.005 Sum_probs=81.8
Q ss_pred EeeeeecCCCCceeeCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEc--CCCeEEe--eeeeccCCCcceEEEEECCCC
Q 023642 107 MLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYDV--ERGWKIQ--KDILAKSLRWTVTDTSLSPDQ 181 (279)
Q Consensus 107 ~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l-~s~~~d~~i~iwd~--~~~~~~~--~~~~~~~~~~~v~~~~~sp~~ 181 (279)
.+|.+.+......+..+....+.++|+||++.| ++.+.++.|.+||+ .++.... .......+......+++.++|
T Consensus 131 ~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G 210 (297)
T 3g4e_A 131 ALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG 210 (297)
T ss_dssp EEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS
T ss_pred EEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC
Confidence 445554432222333444567899999999876 45566789999997 4554321 122222334568899999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEe-cCCCEEEEe
Q 023642 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS-TDGRELVAG 245 (279)
Q Consensus 182 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~g~~l~t~ 245 (279)
++.++....+.|.+||..+++....... ....+++++|. |+++.|+..
T Consensus 211 ~lwva~~~~~~v~~~d~~tG~~~~~i~~----------------p~~~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 211 KLWVACYNGGRVIRLDPVTGKRLQTVKL----------------PVDKTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp CEEEEEETTTEEEEECTTTCCEEEEEEC----------------SSSBEEEEEEESGGGCEEEEE
T ss_pred CEEEEEcCCCEEEEEcCCCceEEEEEEC----------------CCCCceEEEEeCCCCCEEEEE
Confidence 9888888888999999998876443322 11268999998 887765543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.3e-05 Score=65.13 Aligned_cols=115 Identities=13% Similarity=0.023 Sum_probs=76.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeecc--CCCcceEEEEECCCCCEEEEEeC------CCeEE
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK--SLRWTVTDTSLSPDQRHLVYASM------SPIVH 194 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~------d~~i~ 194 (279)
....+.+++|+|+|+++++. . ..|.+||..+++.... .... .....+.+++++|+|+++++... .+.|.
T Consensus 88 ~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~-~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~ 164 (326)
T 2ghs_A 88 LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLH-AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIY 164 (326)
T ss_dssp CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEE-ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEE
T ss_pred CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEE-eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEE
Confidence 45679999999999877765 4 4599999988754321 1111 11235889999999997766542 24566
Q ss_pred EEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEE-ecCCCeEEEEECC--CC
Q 023642 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLE--AN 259 (279)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t-~s~d~~i~vwd~~--~~ 259 (279)
.++ +++...+.. .......++|+|+|+.|+. .+.++.|.+||+. ++
T Consensus 165 ~~~--~g~~~~~~~-----------------~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~G 213 (326)
T 2ghs_A 165 HVA--KGKVTKLFA-----------------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG 213 (326)
T ss_dssp EEE--TTEEEEEEE-----------------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred EEe--CCcEEEeeC-----------------CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccC
Confidence 666 444322211 1114678999999987654 4557899999986 55
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.9e-06 Score=71.28 Aligned_cols=120 Identities=11% Similarity=-0.011 Sum_probs=82.0
Q ss_pred ECCCCCEEEEEeC--CC---cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe----------CCCeEEEE
Q 023642 132 FSADGSLFVAGFQ--AS---QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIV 196 (279)
Q Consensus 132 ~spd~~~l~s~~~--d~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------~d~~i~i~ 196 (279)
..|++++++.... .. .|.+||..+++.+..+.. + ..+ .++++|||++++.+. .++.|.+|
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~--g-~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG--G-FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecC--C-CCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence 3467777766653 22 889999999876654221 2 223 899999999998876 36789999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC--CCeEEEEECCCCeEEEE-Ee
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLR-IL 266 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~--d~~i~vwd~~~~~~~~~-~~ 266 (279)
|..+.+........... .+. +......+.|+|||++|+.+.. ++.|.++| .+++.+.+ ++
T Consensus 103 D~~t~~~~~~i~~~~~~---~~~------~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~ 165 (373)
T 2mad_H 103 DPVTFLPIADIELPDAP---RFD------VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS 165 (373)
T ss_pred ECCCCcEEEEEECCCcc---ccc------cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC
Confidence 99887764332221000 000 0013457899999999998774 57899999 99998888 64
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.4e-05 Score=67.27 Aligned_cols=138 Identities=11% Similarity=0.088 Sum_probs=90.0
Q ss_pred EEECCCCCEEEEEeCCC--cEEEEEcCCCeEEeeeeeccC-CCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeee
Q 023642 130 SQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKS-LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (279)
Q Consensus 130 ~~~spd~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~ 206 (279)
++|+|+++.|+++..++ .|.+|+...+........... ....+.+++++|++..|+.+..++.|+.||..++.....
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 99999999998888766 799999876644322211112 344678899999655555577788999999987764332
Q ss_pred ----ecccccc--c-eeEEeeCCC-----------------CC-------c---------------cccEEEEEEecCCC
Q 023642 207 ----ANVTEIH--D-GLDFSAADD-----------------GG-------Y---------------SFGIFSLKFSTDGR 240 (279)
Q Consensus 207 ----~~~~~~~--~-~~~~~~~~~-----------------~~-------~---------------~~~v~~~~~sp~g~ 240 (279)
....... . ++.+.+... .+ + -.....++|+|+|+
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~ 335 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN 335 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC
T ss_pred ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC
Confidence 1000001 1 333433211 00 0 13478899999999
Q ss_pred EEEEec-CCCeEEEEECCCCeEEEEEeCC
Q 023642 241 ELVAGS-SDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 241 ~l~t~s-~d~~i~vwd~~~~~~~~~~~~h 268 (279)
++++-+ .++.|+.|++.++. +.++.++
T Consensus 336 lyvad~~~~~~I~~~~~~~G~-v~~~~g~ 363 (409)
T 3hrp_A 336 FYIVDGFKGYCLRKLDILDGY-VSTVAGQ 363 (409)
T ss_dssp EEEEETTTTCEEEEEETTTTE-EEEEEEC
T ss_pred EEEEeCCCCCEEEEEECCCCE-EEEEeCC
Confidence 888877 78899999987776 4555554
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.45 E-value=2e-05 Score=66.89 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=76.4
Q ss_pred EEEECCCCCEEEEEe----------CCCcEEEEEcCCCeEEeeeeec-cCC---CcceEEEEECCCCCEEEEEeC--CCe
Q 023642 129 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILA-KSL---RWTVTDTSLSPDQRHLVYASM--SPI 192 (279)
Q Consensus 129 ~~~~spd~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~-~~~---~~~v~~~~~sp~~~~l~~~~~--d~~ 192 (279)
.+++||||++++.+. .++.|.+||..+.+.+...... ... ......++|+|||++|+.++. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999998875 3678999999987665543221 010 123568999999999998874 578
Q ss_pred EEEEECCCCceeee-eccccccceeEEeeCCCCCccccEEEEEEecCC-CEEEEecCCCeEEEEECCCCeEE
Q 023642 193 VHIVDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLS 262 (279)
Q Consensus 193 i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~t~s~d~~i~vwd~~~~~~~ 262 (279)
|.++| .+++.... .... .++.+.|++ +.+++.+.|+.+.++|. +++.+
T Consensus 150 v~viD-~t~~~~~~~i~~~--------------------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~ 199 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP--------------------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA 199 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC--------------------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEE
Confidence 99999 88876433 2110 123444554 34455667778888888 66655
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.43 E-value=1e-05 Score=66.54 Aligned_cols=129 Identities=10% Similarity=0.042 Sum_probs=87.6
Q ss_pred CCceeeCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEE
Q 023642 116 GPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (279)
Q Consensus 116 ~~~~l~~h~~~V~~~~~spd~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 194 (279)
....+..........+|+|+++ +++++..++.|..|+.. +.. .. +......+..++++|+|+++++...++.|.
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~---~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DV---LLDATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EE---EEESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EE---EeCCCCccceeeECCCCCEEEEECCCCEEE
Confidence 3445666777888999999998 66777788999999984 432 22 223445689999999999777766678899
Q ss_pred EEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEE----ecC-------------CCeEEEEECC
Q 023642 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA----GSS-------------DDCIYVYDLE 257 (279)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t----~s~-------------d~~i~vwd~~ 257 (279)
+|+.. ++...+....... ....+..++++|+|++++| |.. .+.|+.||..
T Consensus 111 ~~~~~-g~~~~~~~~~~~~------------~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 111 RSDAD-GQAHLLVGRYAGK------------RLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EECTT-SCEEEEECEETTE------------ECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EECCC-CCEEEEEeccCCC------------ccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 99986 5543322111000 0124677999999998886 432 2468888876
Q ss_pred CCeEE
Q 023642 258 ANKLS 262 (279)
Q Consensus 258 ~~~~~ 262 (279)
+++..
T Consensus 178 ~g~~~ 182 (305)
T 3dr2_A 178 GSPLQ 182 (305)
T ss_dssp SCCCE
T ss_pred CCcEE
Confidence 66543
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.42 E-value=5.3e-06 Score=70.36 Aligned_cols=78 Identities=19% Similarity=0.291 Sum_probs=59.9
Q ss_pred EEECCCCCEEEEEe----------CCCcEEEEEcCCCeEEeeeeeccC----CCcceEEEEECCCCCEEEEEeC--CCeE
Q 023642 130 SQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKS----LRWTVTDTSLSPDQRHLVYASM--SPIV 193 (279)
Q Consensus 130 ~~~spd~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~--d~~i 193 (279)
++++|||++++.++ .++.|.+||..+.+.+..+....+ .......++|+|||++++.++. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 99999999887765 367899999999977766433221 1124567999999999988874 6899
Q ss_pred EEEECCCCceeeee
Q 023642 194 HIVDVGSGTMESLA 207 (279)
Q Consensus 194 ~i~d~~~~~~~~~~ 207 (279)
.++|+.+++.....
T Consensus 163 sVID~~t~~vv~tI 176 (386)
T 3sjl_D 163 GVVDLEGKAFKRML 176 (386)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEECCCCcEEEEE
Confidence 99999999875543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.41 E-value=5.8e-05 Score=61.06 Aligned_cols=121 Identities=13% Similarity=0.051 Sum_probs=89.1
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~ 201 (279)
.....+.+++++++|+++++...++.|.+||.. ++... . ........+.++++.++++++++...++.|..||.. +
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-F-EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-E-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-E-ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 345778999999999988887788999999988 54332 1 122333568999999999988877778899999987 5
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEE
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~ 262 (279)
+....... . ....+.++++.++|.++++...++.|..||.. ++..
T Consensus 93 ~~~~~~~~----------~-----~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~ 137 (300)
T 2qc5_A 93 GFTEYPLP----------Q-----PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY 137 (300)
T ss_dssp CEEEEECS----------S-----TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred CeEEecCC----------C-----CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE
Confidence 54322110 0 11268899999999988887778899999987 5544
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.5e-06 Score=71.87 Aligned_cols=120 Identities=14% Similarity=0.032 Sum_probs=84.7
Q ss_pred CCCCEEEEEeCC-----CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe----------CCCeEEEEEC
Q 023642 134 ADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIVDV 198 (279)
Q Consensus 134 pd~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------~d~~i~i~d~ 198 (279)
|+++.++..... +.|.++|..+.+.+..+.... .+ .++++||+++|+.++ .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~---~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF---LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS---SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC---CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 466766655442 699999999998776654322 23 799999999988776 3678999999
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC--CCeEEEEECCCCeEEEEEeC
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~--d~~i~vwd~~~~~~~~~~~~ 267 (279)
.+.+........... .+. .......+.|+|||++|+.+.. ++.|.+.|+.+++.+.+++-
T Consensus 157 ~t~~vv~~I~v~g~~---r~~------~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v 218 (426)
T 3c75_H 157 VTFLPIADIELPDAP---RFL------VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV 218 (426)
T ss_dssp TTCCEEEEEEETTCC---CCC------BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred CCCcEEEEEECCCcc---ccc------cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence 998875433221000 000 0012345789999999998764 57899999999999988874
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.36 E-value=8.2e-05 Score=60.16 Aligned_cols=120 Identities=11% Similarity=0.067 Sum_probs=86.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
....+.+++++|+++++++...++.|..||.. ++.... ........+.++++.|+++++++...++.|..||. +++
T Consensus 102 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~--~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~ 177 (300)
T 2qc5_A 102 PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEY--DLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGK 177 (300)
T ss_dssp TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEE--ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEc--cCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCc
Confidence 34678999999999988887778899999988 544321 12223446899999999997777666789999998 555
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEE
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~ 262 (279)
....... . ....+..++++++|.++++....+.|.+||. +++..
T Consensus 178 ~~~~~~~----------~-----~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~ 221 (300)
T 2qc5_A 178 LEEYPLP----------T-----NAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEIS 221 (300)
T ss_dssp EEEEECS----------S-----TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred EEEeeCC----------C-----CCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEE
Confidence 4322110 0 1236789999999988777767778999998 45433
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=4.8e-05 Score=63.14 Aligned_cols=134 Identities=15% Similarity=0.118 Sum_probs=86.5
Q ss_pred CCeEEEEECCCCCEEEEEeC------CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEE-eCCCeEEEEE
Q 023642 125 SRAYVSQFSADGSLFVAGFQ------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVD 197 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~i~d 197 (279)
..++.++++|+|+++++... .+.|..++ +++.. ... ........++|+||++.|+.+ +.++.|.+||
T Consensus 134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~---~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d 207 (326)
T 2ghs_A 134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLF---ADISIPNSICFSPDGTTGYFVDTKVNRLMRVP 207 (326)
T ss_dssp EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEE---EEESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-Eee---CCCcccCCeEEcCCCCEEEEEECCCCEEEEEE
Confidence 46899999999997776542 24555556 45332 211 122246789999999877555 4578999999
Q ss_pred CC--CC-ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeE
Q 023642 198 VG--SG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIAL 274 (279)
Q Consensus 198 ~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (279)
+. ++ ...... .+.... .....+..++++++|.+.++...++.|.+||. +++.+..+..+...+.+
T Consensus 208 ~~~~~Gl~~~~~~---------~~~~~~--~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~ 275 (326)
T 2ghs_A 208 LDARTGLPTGKAE---------VFIDST--GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTC 275 (326)
T ss_dssp BCTTTCCBSSCCE---------EEEECT--TSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEE
T ss_pred cccccCCcccCce---------EEEECC--CCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEE
Confidence 86 55 321000 010000 01125678999999988777666788999998 57777888776666666
Q ss_pred EE
Q 023642 275 WI 276 (279)
Q Consensus 275 v~ 276 (279)
+.
T Consensus 276 ~a 277 (326)
T 2ghs_A 276 PA 277 (326)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.6e-05 Score=68.29 Aligned_cols=121 Identities=8% Similarity=0.055 Sum_probs=83.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCC--eEEEEECCCC
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSG 201 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--~i~i~d~~~~ 201 (279)
-.....++|+|+++++++...++.|++||..++..... . .... ... ++|+|+++.|+.+..++ .|.+|+..++
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~-~--~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV-H--PGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE-E--ETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe-e--ccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence 45688999999999888888889999999998754332 1 1222 234 99999999999888765 7999998765
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeE
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~ 261 (279)
.......... . .....+.+++++|++..|+.+..++.|+.||..++..
T Consensus 205 ~~~~~~g~~~--------~----~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~ 252 (409)
T 3hrp_A 205 WAPTRIGQLG--------S----TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV 252 (409)
T ss_dssp TCEEEEEECC--------T----TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE
T ss_pred ceeEEeeecc--------c----hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE
Confidence 5421110000 0 0112567899999544555566788999999987753
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-05 Score=66.41 Aligned_cols=133 Identities=11% Similarity=-0.017 Sum_probs=86.9
Q ss_pred CCeEEEEECCCCCEEEEEeC--CCcEEEEEcCCCeEEeeee----eccCCCcceEEEEECCCCCEEEEEeC-----CCeE
Q 023642 125 SRAYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDI----LAKSLRWTVTDTSLSPDQRHLVYASM-----SPIV 193 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~--d~~i~iwd~~~~~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~~~-----d~~i 193 (279)
.....++++|+|+.+++... ++.++||.+.+++.. .+. ....+...+..++++|+++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 67899999999999988642 342555655455322 110 11234457999999999887665543 5789
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCE-EEEec---CCCeEEEEECCCCeEEEEEeCC
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-LVAGS---SDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~t~s---~d~~i~vwd~~~~~~~~~~~~h 268 (279)
.+||+.+++........... ..+...+..++++|++.. +++.. .++.|.+||+.+++....+.+|
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~----------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~ 164 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPI----------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGY 164 (343)
T ss_dssp EEEETTTTEEEEEEECCTTT----------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTC
T ss_pred EEEECCCCeEEEEEECChhh----------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCC
Confidence 99999988754322211100 002235678999986544 45554 5789999999988877777654
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.9e-05 Score=71.39 Aligned_cols=126 Identities=10% Similarity=0.045 Sum_probs=78.2
Q ss_pred EEEEECCCCCEEEEEeCCC-------------cEEEEEcCCCeEEe-eeeeccC-CCcceEEEEECCCCCEEEEEeC---
Q 023642 128 YVSQFSADGSLFVAGFQAS-------------QIRIYDVERGWKIQ-KDILAKS-LRWTVTDTSLSPDQRHLVYASM--- 189 (279)
Q Consensus 128 ~~~~~spd~~~l~s~~~d~-------------~i~iwd~~~~~~~~-~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~--- 189 (279)
..++|+ |++.|+.++.+. .|++|++.++.... .+..... +...+..+.|+|||++|+....
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 577899 999999888774 39999998764211 1111223 3445788999999998865442
Q ss_pred -CCeEEEEECCCCc--eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEE-ecCC---CeEEEEECCCCeE-
Q 023642 190 -SPIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSD---DCIYVYDLEANKL- 261 (279)
Q Consensus 190 -d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t-~s~d---~~i~vwd~~~~~~- 261 (279)
+..++++|+.++. ...+.. +....... |+++|..|+. ...+ ..|.++|+.++..
T Consensus 257 ~~~~i~~~d~~~~~~~~~~l~~-----------------~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~ 318 (693)
T 3iuj_A 257 SGNRLYVKDLSQENAPLLTVQG-----------------DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA 318 (693)
T ss_dssp SCCEEEEEETTSTTCCCEEEEC-----------------SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred CCcEEEEEECCCCCCceEEEeC-----------------CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence 2489999998763 222211 11133333 5666665554 3333 5799999987654
Q ss_pred -EEEEeCCCcce
Q 023642 262 -SLRILAHTVNI 272 (279)
Q Consensus 262 -~~~~~~h~~~v 272 (279)
...+..|...+
T Consensus 319 ~~~~l~~~~~~~ 330 (693)
T 3iuj_A 319 HWRDLIPERQQV 330 (693)
T ss_dssp GCEEEECCCSSC
T ss_pred ccEEEecCCCCE
Confidence 23454454443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.25 E-value=9e-05 Score=61.92 Aligned_cols=134 Identities=10% Similarity=0.102 Sum_probs=83.4
Q ss_pred CCCCCeEEEEECCCCCEEEEEeC-----CCcEEEEEcCCCeEEeeeeec---cCCCcceEEEEECCCCCEE-EEEe---C
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILA---KSLRWTVTDTSLSPDQRHL-VYAS---M 189 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l-~~~~---~ 189 (279)
+|...+..++++|+++++++-.. +.+|.+||+.+++.+...... ..+...+..++++|++..+ ++-. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 56678999999999987776543 579999999998755443211 1223457899999875554 4444 5
Q ss_pred CCeEEEEECCCCceeeeecc--ccccceeEEeeCC-------CCC----ccccEEEEEEecCCCEEEEecCCC-eEEEEE
Q 023642 190 SPIVHIVDVGSGTMESLANV--TEIHDGLDFSAAD-------DGG----YSFGIFSLKFSTDGRELVAGSSDD-CIYVYD 255 (279)
Q Consensus 190 d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~----~~~~v~~~~~sp~g~~l~t~s~d~-~i~vwd 255 (279)
++.|.+||+.+++....... ........+...+ ..+ ....+..++|+|+|+.|+.+..++ .++.++
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 78999999988776443211 0000001111111 000 012468899999999888776554 555555
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.6e-08 Score=84.61 Aligned_cols=141 Identities=12% Similarity=0.089 Sum_probs=69.4
Q ss_pred ccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceE-EEEECC
Q 023642 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT-DTSLSP 179 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~sp 179 (279)
+.++.+..|+....+..+.+.. +.+.+..+.+++..+++++.|+.|+.||..+|+.+..... .....+. ...+.
T Consensus 16 s~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~--~~~~~~~~sp~~~- 90 (369)
T 2hz6_A 16 TLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPF--TIPELVQASPCRS- 90 (369)
T ss_dssp ETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSC--CHHHHHTTCSCC--
T ss_pred cCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeec--cCccccccCceEe-
Confidence 3455666666555555555554 4555555667788888888999999999988865443210 0001110 00111
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
++..+++++.|+.++.||..+|+....... + . ...++|++..+++++.|+.|+.||.++|
T Consensus 91 ~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~----------------~--~--~~~~~p~~~~v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 91 SDGILYMGKKQDIWYVIDLLTGEKQQTLSS----------------A--F--ADSLSPSTSLLYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp ----CCCCEEEEEEEEECCC------------------------------------------EEEEEEEEEEECCCSSSS
T ss_pred cCCEEEEEeCCCEEEEEECCCCcEEEEecC----------------C--C--cccccccCCEEEEEecCCEEEEEECCCC
Confidence 345677788899999999999987432211 0 0 1345668888899999999999999998
Q ss_pred eEEEEEe
Q 023642 260 KLSLRIL 266 (279)
Q Consensus 260 ~~~~~~~ 266 (279)
+.+-++.
T Consensus 151 ~~~W~~~ 157 (369)
T 2hz6_A 151 ELRWNAT 157 (369)
T ss_dssp SCCCEEE
T ss_pred CEEEeEe
Confidence 8665543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=3.4e-05 Score=70.69 Aligned_cols=122 Identities=11% Similarity=0.055 Sum_probs=85.3
Q ss_pred EECCCC---CEEEEEeCCCcEEEEEcCCCeEEeeeeecc--------CCCcce------------------------EEE
Q 023642 131 QFSADG---SLFVAGFQASQIRIYDVERGWKIQKDILAK--------SLRWTV------------------------TDT 175 (279)
Q Consensus 131 ~~spd~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------~~~~~v------------------------~~~ 175 (279)
....+| ..++.++.+|.|.++|..+|+.+....... ....++ ..+
T Consensus 319 ~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~ 398 (677)
T 1kb0_A 319 DIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPM 398 (677)
T ss_dssp EEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCC
T ss_pred ecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCc
Confidence 334477 678999999999999999998765532110 000011 156
Q ss_pred EECCCCCEEEEEeC-------------------------------------------CCeEEEEECCCCceeeeeccccc
Q 023642 176 SLSPDQRHLVYASM-------------------------------------------SPIVHIVDVGSGTMESLANVTEI 212 (279)
Q Consensus 176 ~~sp~~~~l~~~~~-------------------------------------------d~~i~i~d~~~~~~~~~~~~~~~ 212 (279)
+|+|+..++++... .+.|..||+.+++........
T Consensus 399 a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-- 476 (677)
T 1kb0_A 399 SFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-- 476 (677)
T ss_dssp EEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES--
T ss_pred eEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC--
Confidence 88998888776543 167999999998875433211
Q ss_pred cceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCC
Q 023642 213 HDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (279)
Q Consensus 213 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~ 269 (279)
..+....++.++..++.++.|+.+++||.++|+.+.++....
T Consensus 477 ---------------~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 477 ---------------SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp ---------------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ---------------CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 123344566778888889999999999999999999997443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=5.5e-05 Score=60.77 Aligned_cols=119 Identities=15% Similarity=0.100 Sum_probs=81.0
Q ss_pred CeEEEEECCCCCEEEEEeC--CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCCc
Q 023642 126 RAYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGT 202 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~ 202 (279)
....++|+||+.++++.+. ++.|+++|+.+++.+..... ..+ .....+++ ++..|+.+. .++.+.++|..+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-~~~-~fgeGi~~--~g~~lyv~t~~~~~v~viD~~t~~ 97 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM-DDS-YFGEGLTL--LNEKLYQVVWLKNIGFIYDRRTLS 97 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC-CTT-CCEEEEEE--ETTEEEEEETTCSEEEEEETTTTE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec-CCC-cceEEEEE--eCCEEEEEEecCCEEEEEECCCCc
Confidence 3578999999766666554 57999999999987765432 222 12234444 455665554 67899999999888
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
........ .. . ...+++||+.++.+..++.|.++|..+.+.+.++.
T Consensus 98 v~~~i~~g-~~---------------~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~ 143 (266)
T 2iwa_A 98 NIKNFTHQ-MK---------------D--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHN 143 (266)
T ss_dssp EEEEEECC-SS---------------S--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred EEEEEECC-CC---------------C--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 75433221 00 1 12355688877776678899999999988888887
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.6e-05 Score=65.61 Aligned_cols=119 Identities=17% Similarity=0.091 Sum_probs=82.0
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCeEEe-eeeecc-----C---CCcceEEEEECCCCCEEEEEeC----------C
Q 023642 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQ-KDILAK-----S---LRWTVTDTSLSPDQRHLVYASM----------S 190 (279)
Q Consensus 130 ~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~-----~---~~~~v~~~~~sp~~~~l~~~~~----------d 190 (279)
+.|++++..++..+..++|.+.|........ ...... . .......++++|+++.++.... +
T Consensus 270 ~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s 349 (426)
T 3c75_H 270 PAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAAS 349 (426)
T ss_dssp CEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCE
T ss_pred eeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCC
Confidence 4567777777766777888888886543211 100000 0 0111223789999988776542 3
Q ss_pred CeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC-EEEEec-CCCeEEEEECCCCeEEEEE
Q 023642 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGS-SDDCIYVYDLEANKLSLRI 265 (279)
Q Consensus 191 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~t~s-~d~~i~vwd~~~~~~~~~~ 265 (279)
+.|.++|+.+.+......... ....+.|+|||+ ++++.. .++.|.|+|+.+++.+.++
T Consensus 350 ~~VsVID~~T~kvv~~I~vg~-----------------~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 350 RFVVVLNAETGERINKIELGH-----------------EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-----------------EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CEEEEEECCCCeEEEEEECCC-----------------CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 579999999988754432211 467899999999 888777 5899999999999999998
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-05 Score=74.11 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=76.4
Q ss_pred CeEEEEEC-CCCCEEEEEeC-CC----cEEEEEcCCC-eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-----CeE
Q 023642 126 RAYVSQFS-ADGSLFVAGFQ-AS----QIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIV 193 (279)
Q Consensus 126 ~V~~~~~s-pd~~~l~s~~~-d~----~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i 193 (279)
.+...+|| |||++|+.+.. +| +|+++|+.++ +.+...+ ......++|+|||+.|+....+ ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~-----~~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV-----SGTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE-----EEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc-----cCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 67889999 99998875533 22 5999999988 6322111 1124568899999988877655 258
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec---CCCeEEEEECCCC
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLEAN 259 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s---~d~~i~vwd~~~~ 259 (279)
+++++.++...... .+... .......+.|||||++|+..+ ....|+++|+.++
T Consensus 250 ~~~~lgt~~~~~~l---------v~~~~----~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 250 WRHVMGKLQSEDVC---------LYEEH----NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEETTSCGGGCEE---------EEECC----CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEECCCCchhcEE---------EEecC----CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 88888766421100 11111 112456789999999888654 2346999999875
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.15 E-value=3.4e-05 Score=61.55 Aligned_cols=118 Identities=13% Similarity=0.053 Sum_probs=82.3
Q ss_pred CeEEEEECCCCCEEEEEeCCC--cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCCc
Q 023642 126 RAYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGT 202 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~ 202 (279)
-...+.|+ ++.++.+.+.++ .|+++|+.+++.+..... . .......+.+++..|.... .++.+.+||..+.+
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-~---~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL-G---KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC-C---TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec-C---CccceeEEEEeCCEEEEEEeeCCEEEEEECccCc
Confidence 34788898 677778888776 999999999987766432 2 2344444445566666555 58899999999988
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
......... ....+++|++.|+.+..++.|.++|..+.+.+.+++-
T Consensus 119 ~~~ti~~~~-------------------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 119 QVRSFNYDG-------------------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp EEEEEECSS-------------------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred EEEEEECCC-------------------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 754333210 1123346777777766678899999999888888764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.09 E-value=7.8e-05 Score=64.07 Aligned_cols=137 Identities=12% Similarity=0.065 Sum_probs=85.1
Q ss_pred eEEEEECCCCCEEEEEe-------------------CCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE--CCCCCEEE
Q 023642 127 AYVSQFSADGSLFVAGF-------------------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL--SPDQRHLV 185 (279)
Q Consensus 127 V~~~~~spd~~~l~s~~-------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~ 185 (279)
-+.+.|+|+++.++++. .+.+|.+||+.+++.+..+. ..........+.| +|++++++
T Consensus 190 ~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~-vg~~g~~P~~i~f~~~Pdg~~aY 268 (462)
T 2ece_A 190 AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT-LGEENRMALELRPLHDPTKLMGF 268 (462)
T ss_dssp CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE-SCTTEEEEEEEEECSSTTCCEEE
T ss_pred cceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe-cCCCCCccceeEeeECCCCCEEE
Confidence 45688999999888885 36899999999886555432 2212223455655 99999977
Q ss_pred EEe------CCCeEEEEECCCCceeeeeccccccceeEEeeCC------CCCccccEEEEEEecCCCEEEEecC-CCeEE
Q 023642 186 YAS------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD------DGGYSFGIFSLKFSTDGRELVAGSS-DDCIY 252 (279)
Q Consensus 186 ~~~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~sp~g~~l~t~s~-d~~i~ 252 (279)
.++ .+++|.+|....+......... ... ..+...- -.+-......+.+||||++|.++.. .+.|.
T Consensus 269 V~~e~~~~~Lss~V~v~~~d~g~~~~~~vId-i~~-~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Va 346 (462)
T 2ece_A 269 INMVVSLKDLSSSIWLWFYEDGKWNAEKVIE-IPA-EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVR 346 (462)
T ss_dssp EEEEEETTTCCEEEEEEEEETTEEEEEEEEE-ECC-EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEE
T ss_pred EEEeeeccCCCceEEEEEecCCceeEEEEEe-CCC-ccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEE
Confidence 666 5678888776655432222110 000 0000000 0000124678999999999987765 67999
Q ss_pred EEECC---CCeEEEEEe
Q 023642 253 VYDLE---ANKLSLRIL 266 (279)
Q Consensus 253 vwd~~---~~~~~~~~~ 266 (279)
+||+. +.+.+..+.
T Consensus 347 vfdV~d~~~~~lv~~I~ 363 (462)
T 2ece_A 347 QYDISNPFKPVLTGKVK 363 (462)
T ss_dssp EEECSSTTSCEEEEEEE
T ss_pred EEEecCCCCcEEEEEEE
Confidence 99985 345666665
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=4.8e-07 Score=76.80 Aligned_cols=114 Identities=11% Similarity=-0.032 Sum_probs=60.9
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccc
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 214 (279)
++..+++++.|+.|..||..+|+.+..... +.+.+..+.+++..+++++.|+.++.||..+|+...........
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-----~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~- 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-----DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE- 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-----CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-----CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc-
Confidence 678899999999999999999988776432 24555556677878888889999999999888764322111000
Q ss_pred eeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 215 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
.. ...++ +. ++..+++++.++.|+.||..+|+.+.++..+
T Consensus 82 ~~---------~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~ 121 (369)
T 2hz6_A 82 LV---------QASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA 121 (369)
T ss_dssp HH---------TTCSC----C------CCCCEEEEEEEEECCC-----------
T ss_pred cc---------ccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC
Confidence 00 00011 11 3446777888999999999999988777654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00017 Score=66.17 Aligned_cols=117 Identities=15% Similarity=0.080 Sum_probs=80.6
Q ss_pred CCC---EEEEEeCCCcEEEEEcCCCeEEeeeeecc-------------------------CCCc-----------ceEEE
Q 023642 135 DGS---LFVAGFQASQIRIYDVERGWKIQKDILAK-------------------------SLRW-----------TVTDT 175 (279)
Q Consensus 135 d~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------~~~~-----------~v~~~ 175 (279)
+|+ .++.++.+|.++++|..+|+.+....... .... .-..+
T Consensus 315 ~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~ 394 (689)
T 1yiq_A 315 DGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPM 394 (689)
T ss_dssp TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCC
T ss_pred CCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcc
Confidence 565 78889999999999999998764321100 0000 01136
Q ss_pred EECCCCCEEEEEeC---------------------------------------------CCeEEEEECCCCceeeeeccc
Q 023642 176 SLSPDQRHLVYASM---------------------------------------------SPIVHIVDVGSGTMESLANVT 210 (279)
Q Consensus 176 ~~sp~~~~l~~~~~---------------------------------------------d~~i~i~d~~~~~~~~~~~~~ 210 (279)
+|+|+..++++... ++.+..||+.+++........
T Consensus 395 a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~ 474 (689)
T 1yiq_A 395 SYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV 474 (689)
T ss_dssp EEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES
T ss_pred eECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC
Confidence 88898887776532 367899999998875432211
Q ss_pred cccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 211 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
..+..-.++..+..++.++.|+.|+.||.++|+.+-+++..
T Consensus 475 -----------------~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 475 -----------------TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp -----------------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred -----------------CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 12222355667888899999999999999999999888754
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.02 E-value=5.4e-05 Score=60.44 Aligned_cols=118 Identities=11% Similarity=0.055 Sum_probs=81.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEE-EeCCCeEEEEECCCCce
Q 023642 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~i~i~d~~~~~~ 203 (279)
.-...+.|+ ++.++.+.+.++.|+++|+.+++.+... +.. ........+++..|+. .-.++.+.+||..+.+.
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE
Confidence 334788887 4677788889999999999999877664 222 2333333344555444 44688999999999887
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
....... + .-+.++ +|++.|+.+..++.|+++|..+.+.+.+++-
T Consensus 129 ~~ti~~~---------~--------eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 129 ERTTRYS---------G--------EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp EEEEECS---------S--------CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred EEEEeCC---------C--------ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 5443321 0 112233 5678887777788999999999998888864
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00019 Score=56.68 Aligned_cols=119 Identities=13% Similarity=0.089 Sum_probs=80.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCC--cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEE-eCCCeEEEEECCCC
Q 023642 125 SRAYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSG 201 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~i~d~~~~ 201 (279)
.-...+.|++ +.++.+.+.+| .|+++|+.+++.+..... .. ........+++..|+.. -.++.+.+||..+.
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l-~~---~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl 95 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEV-PP---PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATL 95 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEEC-CT---TCCEEEEEEETTEEEEEESSSSEEEEEETTTT
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeC-CC---CcceeEEEEeCCEEEEEEeeCCEEEEEECCcC
Confidence 4467889987 56667777754 899999999987765432 22 23334444455555544 46889999999998
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
+......... .-+.+ .+++..|+.+..++.|.++|..+.+.+.+++-
T Consensus 96 ~~~~ti~~~~-----------------~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 96 TPRARFRYPG-----------------EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp EEEEEEECSS-----------------CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred cEEEEEeCCC-----------------CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 8754332210 11233 35677666666688999999999988888864
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00012 Score=65.05 Aligned_cols=135 Identities=16% Similarity=0.191 Sum_probs=84.9
Q ss_pred EEEEECCCCCEEEEEeCCC--------------------------------------cEEEEEcCC--CeE-Eeeeeecc
Q 023642 128 YVSQFSADGSLFVAGFQAS--------------------------------------QIRIYDVER--GWK-IQKDILAK 166 (279)
Q Consensus 128 ~~~~~spd~~~l~s~~~d~--------------------------------------~i~iwd~~~--~~~-~~~~~~~~ 166 (279)
..++++|||+++++.+.+. .|.+.|..+ +.. +..+...
T Consensus 198 d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg- 276 (595)
T 1fwx_A 198 DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA- 276 (595)
T ss_dssp CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-
T ss_pred cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-
Confidence 4577999999998887543 467777776 433 2222111
Q ss_pred CCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe
Q 023642 167 SLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~ 245 (279)
....++.++|||++++.++ .+.+|.++|+.+.+...--+. ........... --.....++|+|+|...++.
T Consensus 277 ---~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l-~~~~~v~~~v~----vG~gP~h~aF~~dG~aY~t~ 348 (595)
T 1fwx_A 277 ---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA-DPRSAVVAEPE----LGLGPLHTAFDGRGNAYTSL 348 (595)
T ss_dssp ---SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-CGGGGEEECCB----CCSCEEEEEECTTSEEEEEE
T ss_pred ---CCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccccc-CcccceEEEcC----CCCCcceEEECCCCeEEEEE
Confidence 1467799999999977665 678999999986531000000 00000000000 00157889999999434456
Q ss_pred cCCCeEEEEECCC----------CeEEEEEeCCCcc
Q 023642 246 SSDDCIYVYDLEA----------NKLSLRILAHTVN 271 (279)
Q Consensus 246 s~d~~i~vwd~~~----------~~~~~~~~~h~~~ 271 (279)
-.|+.|.+||+.+ .+.+.++..|.++
T Consensus 349 ~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp 384 (595)
T 1fwx_A 349 FLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP 384 (595)
T ss_dssp TTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred ecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence 6799999999987 6788888877553
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=4.2e-05 Score=64.68 Aligned_cols=98 Identities=9% Similarity=-0.060 Sum_probs=68.9
Q ss_pred cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe----------CCCeEEEEECCCCceeeeecccccccee
Q 023642 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIVDVGSGTMESLANVTEIHDGL 216 (279)
Q Consensus 147 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 216 (279)
+|.++|..+++.+..+.... .+ .+.++||+++++.+. .++.|.+||+.+++...........
T Consensus 47 ~vsvID~~t~~v~~~i~vG~---~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~--- 118 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAF---LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP--- 118 (368)
T ss_dssp EEEEEETTTTEEEEEEEECT---TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC---
T ss_pred eEEEEECCCCeEEEEEeCCC---CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcc---
Confidence 88899999998877654322 24 799999999988886 3688999999999875443321000
Q ss_pred EEeeCCCCCccccEEEEEEecCCCEEEEecC--CCeEEE--EECCC
Q 023642 217 DFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYV--YDLEA 258 (279)
Q Consensus 217 ~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~--d~~i~v--wd~~~ 258 (279)
.+.. + .....++|+|||++++.+.. +..|.+ +|..+
T Consensus 119 ~~~~-g-----~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 119 RFSV-G-----PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp SCCB-S-----CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred cccc-C-----CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 0000 0 02346899999999988764 467888 99876
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00016 Score=61.08 Aligned_cols=121 Identities=11% Similarity=0.051 Sum_probs=77.9
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCe-EEeeeeecc-----CCC---cceEEEEECCCCCEEEEEeC---------CCeEE
Q 023642 133 SADGSLFVAGFQASQIRIYDVERGW-KIQKDILAK-----SLR---WTVTDTSLSPDQRHLVYASM---------SPIVH 194 (279)
Q Consensus 133 spd~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~-----~~~---~~v~~~~~sp~~~~l~~~~~---------d~~i~ 194 (279)
++++..++..+. +.|.+.|+.... .+.....+. .+. .....++|+||++.++.+.. +..+.
T Consensus 219 ~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ 297 (368)
T 1mda_H 219 ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297 (368)
T ss_dssp ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE
Confidence 455555555555 788888886532 111111110 011 11222789999998876543 23566
Q ss_pred EEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCE-EEEec-CCCeEEEEECCCCeEEEEEeCCCcc
Q 023642 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-LVAGS-SDDCIYVYDLEANKLSLRILAHTVN 271 (279)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~t~s-~d~~i~vwd~~~~~~~~~~~~h~~~ 271 (279)
++|+.+.+........ .....++|+|||++ +++.. .+++|.++|+.+++.+.+++....+
T Consensus 298 ViD~~t~~vv~~i~vg-----------------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P 359 (368)
T 1mda_H 298 SVTASVGQTSGPISNG-----------------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359 (368)
T ss_dssp EEESSSCCEEECCEEE-----------------EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC
T ss_pred EEECCCCeEEEEEECC-----------------CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCC
Confidence 9999998875433221 14678999999984 55666 5899999999999999999865544
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00017 Score=61.94 Aligned_cols=123 Identities=17% Similarity=0.126 Sum_probs=82.9
Q ss_pred EEC--CCCCEEEE-EeCCCcEEEEEcCCC---eEEeeeee---c-cCC-CcceEEEEECCCCCEEEEEeCC------CeE
Q 023642 131 QFS--ADGSLFVA-GFQASQIRIYDVERG---WKIQKDIL---A-KSL-RWTVTDTSLSPDQRHLVYASMS------PIV 193 (279)
Q Consensus 131 ~~s--pd~~~l~s-~~~d~~i~iwd~~~~---~~~~~~~~---~-~~~-~~~v~~~~~sp~~~~l~~~~~d------~~i 193 (279)
.++ +++++|+. +-.+++|.++|+.+. -.+.+.+. + ... ......+...|+| .++++..+ +.+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 346 88888755 566789999998643 12223221 0 011 1135677889999 66666655 789
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec-------------------CCCeEEEE
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-------------------SDDCIYVY 254 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s-------------------~d~~i~vw 254 (279)
.++|..+.+.+.......... ..-+.+-|+|+++.+++.. .+.+|.+|
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~-------------~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~ 233 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQ-------------YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFW 233 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTC-------------CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEE
T ss_pred EEEECCCCeEEEEEccCCCCc-------------cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEE
Confidence 999999988755433221111 1234678899999998874 36899999
Q ss_pred ECCCCeEEEEEeC
Q 023642 255 DLEANKLSLRILA 267 (279)
Q Consensus 255 d~~~~~~~~~~~~ 267 (279)
|+.+++.++++.-
T Consensus 234 D~~~~k~~~tI~v 246 (462)
T 2ece_A 234 DLRKRKRIHSLTL 246 (462)
T ss_dssp ETTTTEEEEEEES
T ss_pred ECCCCcEeeEEec
Confidence 9999988888874
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.001 Score=53.06 Aligned_cols=144 Identities=8% Similarity=-0.052 Sum_probs=91.7
Q ss_pred ccceEeeeeecCCCCceeeCCCCCeEE--EEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC
Q 023642 103 DCCHMLSRYLPVNGPWPVDQTTSRAYV--SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~l~~h~~~V~~--~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 180 (279)
++.+...++...+....+ -...... +++.. +++.+..-.++.+.+||..+.+.+..+.. ... ...+++|
T Consensus 74 ~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~-~~e-----GwGLt~D 144 (268)
T 3nok_A 74 QGTLRQLSLESAQPVWME--RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRY-SGE-----GWGLCYW 144 (268)
T ss_dssp TTEEEECCSSCSSCSEEE--ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEEC-SSC-----CCCEEEE
T ss_pred CCEEEEEECCCCcEEeEE--CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeC-CCc-----eeEEecC
Confidence 334555554444433333 2233333 44432 24444555788999999999987776432 222 1233467
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCe
Q 023642 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (279)
Q Consensus 181 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~ 260 (279)
++.|+.+..++.|.++|..+.+............ --..++.+.|. +|+.++..-.+..|.+.|.++|+
T Consensus 145 g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~-----------~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 145 NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ-----------PVELINELECA-NGVIYANIWHSSDVLEIDPATGT 212 (268)
T ss_dssp TTEEEEECSSSEEEEECTTTCCEEEEEECEETTE-----------ECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB
T ss_pred CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc-----------ccccccccEEe-CCEEEEEECCCCeEEEEeCCCCc
Confidence 8888888889999999999988755443322111 01145677777 77666665568899999999999
Q ss_pred EEEEEeC
Q 023642 261 LSLRILA 267 (279)
Q Consensus 261 ~~~~~~~ 267 (279)
.+.++.-
T Consensus 213 V~~~Idl 219 (268)
T 3nok_A 213 VVGVIDA 219 (268)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9998874
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0022 Score=51.44 Aligned_cols=120 Identities=16% Similarity=0.048 Sum_probs=81.6
Q ss_pred EEEECCCCCEE-EEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeee
Q 023642 129 VSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (279)
Q Consensus 129 ~~~~spd~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 207 (279)
.++++ +..| ++.-.++.+.++|..+.+.+..+.. .... ...+++||+.++.+..++.+.++|..+.+.....
T Consensus 70 Gi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~-g~~~----g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I 142 (266)
T 2iwa_A 70 GLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTH-QMKD----GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKH 142 (266)
T ss_dssp EEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEEC-CSSS----CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEE
T ss_pred EEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEEC-CCCC----eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEE
Confidence 44454 4455 4455678999999999977766432 2111 2346678888887778899999999998765443
Q ss_pred ccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
....... .-..++.+.|. +|..++....++.|.+.|..+++.+.++.-
T Consensus 143 ~Vg~~~~-----------p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~ 190 (266)
T 2iwa_A 143 NVKYNGH-----------RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILL 190 (266)
T ss_dssp ECEETTE-----------ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred EECCCCc-----------ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence 3221100 01136778888 776666665688999999999999999873
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0027 Score=54.07 Aligned_cols=122 Identities=15% Similarity=0.215 Sum_probs=78.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEE-----------eeeeeccC----CCcceEEEEECCC---CCEEEE
Q 023642 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI-----------QKDILAKS----LRWTVTDTSLSPD---QRHLVY 186 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~-----------~~~~~~~~----~~~~v~~~~~sp~---~~~l~~ 186 (279)
+.|..+..||+|++||..+. ..|.|-.+..+... .+...... ...+|..+.|||- +..|++
T Consensus 66 ~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV 144 (452)
T 3pbp_A 66 DDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV 144 (452)
T ss_dssp CTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred CceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence 36788999999999998876 58999888743211 01111211 2467999999995 568999
Q ss_pred EeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEE--ecCCCeEEE
Q 023642 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA--GSSDDCIYV 253 (279)
Q Consensus 187 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t--~s~d~~i~v 253 (279)
-..|++|++||+......+. ....... .|..+. .-..|.+++|.+++-.|.. .+..|.|+-
T Consensus 145 LtsD~~Ir~yDl~~s~~~P~-~L~k~~~--~fg~d~---~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 145 LKEDDTITMFDILNSQEKPI-VLNKPNN--SFGLDA---RVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EETTSCEEEEETTCTTSCCE-EESCCCS--EEESCS---SCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred EecCCEEEEEEcccCCCCCc-chhcccc--ccCCCc---ccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 99999999999987443222 1111111 122111 2247899999987765555 336676653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.012 Score=46.83 Aligned_cols=122 Identities=6% Similarity=-0.102 Sum_probs=77.9
Q ss_pred CCeEEEEECCCCCEEEEEeC---CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCC
Q 023642 125 SRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGS 200 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~ 200 (279)
.....++++|++..|..+.. .+.|..++++.... ... ..........++++|++..|+.+. ..+.|.++|..+
T Consensus 122 ~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RIL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ 198 (267)
T ss_dssp SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EEE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC
Confidence 56789999997666655543 36888888874321 111 112223578999999877665544 567999999976
Q ss_pred CceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
........ .. .....++.. .+..+++....+.|.++|..+++.+.++..
T Consensus 199 ~~~~~~~~------------~~-----~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 199 PGRRKVLE------------GL-----QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp EEEEEEEE------------CC-----CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred CceEEEec------------CC-----CCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence 44322111 00 134566654 344444444568999999999999999864
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0022 Score=58.68 Aligned_cols=79 Identities=13% Similarity=0.051 Sum_probs=56.8
Q ss_pred EEEEECCCCCEEEEEeCCC-------------------cEEEEEcCCCeEEeeeeeccCCC-------cceEEEEECCCC
Q 023642 128 YVSQFSADGSLFVAGFQAS-------------------QIRIYDVERGWKIQKDILAKSLR-------WTVTDTSLSPDQ 181 (279)
Q Consensus 128 ~~~~~spd~~~l~s~~~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~-------~~v~~~~~sp~~ 181 (279)
..++++|++.+++.+..++ .|..+|..+|+.+..... ..|. ....-+....+|
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~-~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE-TPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES-STTCCSCCCCCSCCEEEEEEETT
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec-CCCcccccccCCCcEEEecccCC
Confidence 4678999999998887654 599999999987766432 2221 122223444577
Q ss_pred ---CEEEEEeCCCeEEEEECCCCceeeee
Q 023642 182 ---RHLVYASMSPIVHIVDVGSGTMESLA 207 (279)
Q Consensus 182 ---~~l~~~~~d~~i~i~d~~~~~~~~~~ 207 (279)
..++.++.+|.++++|..+|+.+...
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence 67889999999999999999985443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0015 Score=60.66 Aligned_cols=74 Identities=11% Similarity=0.018 Sum_probs=49.9
Q ss_pred EEEEECCCCCEEEEEeCC-----CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC---CCeEEEEECC
Q 023642 128 YVSQFSADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVG 199 (279)
Q Consensus 128 ~~~~~spd~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i~i~d~~ 199 (279)
..++|+|||+.|+....| .+|.++++.++......+...........+.|+|||++|+..+. ...|+++|+.
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 467899999988777665 36888888876421111111122234678899999999886653 3468889998
Q ss_pred CC
Q 023642 200 SG 201 (279)
Q Consensus 200 ~~ 201 (279)
++
T Consensus 304 ~~ 305 (751)
T 2xe4_A 304 KG 305 (751)
T ss_dssp SC
T ss_pred CC
Confidence 75
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0077 Score=49.15 Aligned_cols=115 Identities=15% Similarity=0.146 Sum_probs=74.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC--CeEEEEECCCCc
Q 023642 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--PIVHIVDVGSGT 202 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~i~i~d~~~~~ 202 (279)
.....++|+|+++++++-..+++|..||..... .. .. .....+..+++.|+|+++++.... ..+..+|..+++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~-~~---~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QI-HA---TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EE-EE---ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EE-EE---eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence 457789999999977777788999999987642 21 11 122368899999999976655432 247777887777
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
...+..... ......++..+++..+++-..++.|+++|..++
T Consensus 107 ~~~~~~~~~---------------~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 107 VETLLTLPD---------------AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp EEEEEECTT---------------CSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred EEEEEeCCC---------------ccccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence 543322110 012344455555555555556788999998765
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0035 Score=56.17 Aligned_cols=118 Identities=14% Similarity=0.083 Sum_probs=77.1
Q ss_pred CCCC---EEEEEeCCCcEEEEEcCCCeEEeeeeeccCC----------Ccce--------------------------EE
Q 023642 134 ADGS---LFVAGFQASQIRIYDVERGWKIQKDILAKSL----------RWTV--------------------------TD 174 (279)
Q Consensus 134 pd~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----------~~~v--------------------------~~ 174 (279)
++|+ .++.++.+|.+.++|..+|+.+......... ..++ ..
T Consensus 311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 390 (571)
T 2ad6_A 311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV 390 (571)
T ss_dssp ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence 4674 5678889999999999999776553221100 0111 24
Q ss_pred EEECCCCCEEEEEe-------------------------------------CCCeEEEEECCCCceeeeeccccccceeE
Q 023642 175 TSLSPDQRHLVYAS-------------------------------------MSPIVHIVDVGSGTMESLANVTEIHDGLD 217 (279)
Q Consensus 175 ~~~sp~~~~l~~~~-------------------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 217 (279)
++++|+..+++... .++.+..||..+++.........
T Consensus 391 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~------ 464 (571)
T 2ad6_A 391 DSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF------ 464 (571)
T ss_dssp CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS------
T ss_pred ceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC------
Confidence 67888877776653 24678888888887643322110
Q ss_pred EeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 218 FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 218 ~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
.+....+...+..++.++.|+.|+.||.++|+.+-+++..
T Consensus 465 -----------~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 465 -----------AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp -----------CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred -----------CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 1122222334667777899999999999999999888743
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.019 Score=45.61 Aligned_cols=124 Identities=9% Similarity=-0.006 Sum_probs=77.8
Q ss_pred CCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC---CCeEEEEECC
Q 023642 124 TSRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVG 199 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i~i~d~~ 199 (279)
......++++|++..|+ +-...+.|.+++++.... .... ..+ ......++++|++..|+.+.. .+.|..+++.
T Consensus 78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~-~~~-~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLF-DTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-CSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEE-ECC-CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence 35678999999766554 445567999999875422 1111 112 135789999997666655554 3688888876
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEE-ecCCCeEEEEECCCCeEEEEEe
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t-~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
......+... .-.....++++|++..|+. -...+.|.++|.........+.
T Consensus 155 g~~~~~~~~~----------------~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~ 206 (267)
T 1npe_A 155 GTNRRILAQD----------------NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE 206 (267)
T ss_dssp SCCCEEEECT----------------TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE
T ss_pred CCCcEEEEEC----------------CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec
Confidence 5432211110 0125788999998776654 4456799999997554433333
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0016 Score=51.85 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=82.7
Q ss_pred CeEEEEECCCCCEEEEE-eCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee
Q 023642 126 RAYVSQFSADGSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~ 204 (279)
......+.+++..|... -.++.+.+||..+.+.+..+.. .. ....+++|+..|+.+..+..|.++|..+.+..
T Consensus 86 ~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~-~~-----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~ 159 (262)
T 3nol_A 86 RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNY-DG-----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPV 159 (262)
T ss_dssp TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEEC-SS-----CCCCEEECSSCEEECCSSSEEEEECTTTCSEE
T ss_pred ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEEC-CC-----CceEEecCCCEEEEECCCCeEEEEcCCCCeEE
Confidence 44443344455566544 4578999999999987766432 22 22344467888887777889999999998875
Q ss_pred eeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
.......... --..++.+.|. +|+.++..-.+..|.+.|.++|+.+.++..
T Consensus 160 ~~I~V~~~g~-----------~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 160 RTITVTAHGE-----------ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp EEEECEETTE-----------ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred EEEEeccCCc-----------cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 4433321000 00145567776 777666665688999999999999999874
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0047 Score=56.65 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=54.8
Q ss_pred EEEECCCCCEEEEEeCCCc-------------------EEEEEcCCCeEEeeeeeccCCC-------cceEEEEECCCCC
Q 023642 129 VSQFSADGSLFVAGFQASQ-------------------IRIYDVERGWKIQKDILAKSLR-------WTVTDTSLSPDQR 182 (279)
Q Consensus 129 ~~~~spd~~~l~s~~~d~~-------------------i~iwd~~~~~~~~~~~~~~~~~-------~~v~~~~~sp~~~ 182 (279)
.++++|++.+++.+..++. |..||.++|+.+..... ..|. .++.-.....+|+
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~-~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQT-TPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEES-STTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeec-CCcccccccCCCCcEEEeeccCCc
Confidence 5789999999999887763 99999999987765432 1121 1222223333665
Q ss_pred ---EEEEEeCCCeEEEEECCCCceee
Q 023642 183 ---HLVYASMSPIVHIVDVGSGTMES 205 (279)
Q Consensus 183 ---~l~~~~~d~~i~i~d~~~~~~~~ 205 (279)
.++.++.+|.++++|..+|+.+.
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~ 343 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLS 343 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEec
Confidence 78889999999999999999853
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0018 Score=58.97 Aligned_cols=120 Identities=13% Similarity=0.106 Sum_probs=78.6
Q ss_pred EEEECC-CCCEEEEEeCCC-----------cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEE
Q 023642 129 VSQFSA-DGSLFVAGFQAS-----------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHI 195 (279)
Q Consensus 129 ~~~~sp-d~~~l~s~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i 195 (279)
.+++.| +++.++.|+.+. .+.+||..+++..........+.....++++.++++.++.|+ .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556777 888888887543 588999988743222111122333344678889999999988 4558999
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec-CC-----CeEEEEECCCCeEEE
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SD-----DCIYVYDLEANKLSL 263 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s-~d-----~~i~vwd~~~~~~~~ 263 (279)
||..+.+.......... -.-.+++..++|++++.|+ .+ ..+.+||..+++...
T Consensus 270 yd~~t~~W~~~~~~~~~---------------R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~ 328 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVA---------------RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 328 (656)
T ss_dssp EEGGGTEEEECCCCSSC---------------CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred ecCcCCceeECCCCCcc---------------ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee
Confidence 99988765443221110 0123445567999999988 34 579999998876544
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.013 Score=46.69 Aligned_cols=125 Identities=10% Similarity=0.096 Sum_probs=81.4
Q ss_pred eeCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 023642 120 VDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 198 (279)
+.+-...+..++|+|++..| ++...++.|...|.. ++.+... .+.+. .....+++.+++.++++.-.++.+.++++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i-~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI-PLDFV-KDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE-ECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE-ecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 44566789999999977655 557778899999998 7655543 23332 35889999999987777667788999988
Q ss_pred CCCceee-eeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC--eEEEEE
Q 023642 199 GSGTMES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD--CIYVYD 255 (279)
Q Consensus 199 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~--~i~vwd 255 (279)
....... .... .+. ......+.....++|+|.+..|.++.... .|+.|+
T Consensus 99 ~~~~~i~~~~~~-------~~~-~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 99 TPNSEVKILKKI-------KIP-LQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp CTTCCEEEEEEE-------ECC-CSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred CCCCeeeeeeee-------ccc-cccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 6644211 1111 010 00001233578999999987777766543 455555
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.004 Score=55.41 Aligned_cols=114 Identities=8% Similarity=0.061 Sum_probs=76.8
Q ss_pred CCeEEEEE-C-CCCCEEEEEeC------------------CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEE
Q 023642 125 SRAYVSQF-S-ADGSLFVAGFQ------------------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (279)
Q Consensus 125 ~~V~~~~~-s-pd~~~l~s~~~------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 184 (279)
.....+++ + |++.+++.+++ ++.+.+.|.++.+....+.... ....++++|||+++
T Consensus 134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg----~pd~~~~spdGk~~ 209 (595)
T 1fwx_A 134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG----NLDNCDADYEGKWA 209 (595)
T ss_dssp CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS----CCCCEEECSSSSEE
T ss_pred CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC----CccceEECCCCCEE
Confidence 45778887 5 99999988852 3579999999987766644322 24568899999999
Q ss_pred EEEeCCC---------------e-----------------------EEEEECCC--Cce-eeeeccccccceeEEeeCCC
Q 023642 185 VYASMSP---------------I-----------------------VHIVDVGS--GTM-ESLANVTEIHDGLDFSAADD 223 (279)
Q Consensus 185 ~~~~~d~---------------~-----------------------i~i~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~ 223 (279)
++.+.+. . |.+.|.++ +.. .. +-+.+
T Consensus 210 ~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~------------~Ipvg- 276 (595)
T 1fwx_A 210 FSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTR------------YIPIA- 276 (595)
T ss_dssp EEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEE------------EEEEE-
T ss_pred EEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEE------------EEecC-
Confidence 8888553 2 34444443 111 00 00000
Q ss_pred CCccccEEEEEEecCCCEEEEec-CCCeEEEEECCCC
Q 023642 224 GGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEAN 259 (279)
Q Consensus 224 ~~~~~~v~~~~~sp~g~~l~t~s-~d~~i~vwd~~~~ 259 (279)
....++.++|||++++.++ .+.+|.++|+.+.
T Consensus 277 ----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 277 ----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp ----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred ----CCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 1346789999999877655 5789999999854
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.008 Score=54.90 Aligned_cols=120 Identities=14% Similarity=0.134 Sum_probs=78.5
Q ss_pred ECCCCC---EEEEEeCCCcEEEEEcCCCeEEeeeeecc---------CCCcce------------------------EEE
Q 023642 132 FSADGS---LFVAGFQASQIRIYDVERGWKIQKDILAK---------SLRWTV------------------------TDT 175 (279)
Q Consensus 132 ~spd~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~v------------------------~~~ 175 (279)
+..+|+ .++.++.+|.+.++|..+|+.+....... ....++ ..+
T Consensus 307 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~ 386 (668)
T 1kv9_A 307 LNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSM 386 (668)
T ss_dssp EEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCC
T ss_pred eccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcc
Confidence 334665 68889999999999999998763321100 000000 126
Q ss_pred EECCCCCEEEEEe------------------------------------CCCeEEEEECCCCceeeeeccccccceeEEe
Q 023642 176 SLSPDQRHLVYAS------------------------------------MSPIVHIVDVGSGTMESLANVTEIHDGLDFS 219 (279)
Q Consensus 176 ~~sp~~~~l~~~~------------------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 219 (279)
+++|+...++... .++.|..||+.+++.........
T Consensus 387 a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-------- 458 (668)
T 1kv9_A 387 SFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-------- 458 (668)
T ss_dssp EEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS--------
T ss_pred eECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC--------
Confidence 7788766655421 23779999999988754322111
Q ss_pred eCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 220 AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 220 ~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
......+...+.+++.++.|+.|+.||.++|+.+.+++..
T Consensus 459 ---------~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 459 ---------HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp ---------SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ---------CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 2222334456788888999999999999999999888754
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.011 Score=53.00 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=42.3
Q ss_pred CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCC
Q 023642 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (279)
Q Consensus 190 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~ 269 (279)
++.+..||+.+++......... .+..-.....+..++.++.|+.++.||.++|+.+-+++...
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-----------------~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-----------------PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS 527 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-----------------CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred cceEEEEECCCCCEEEEecCCC-----------------CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC
Confidence 5778888998888643322110 11111122246677789999999999999999998887543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0051 Score=48.49 Aligned_cols=117 Identities=15% Similarity=0.041 Sum_probs=79.2
Q ss_pred ECCCCCEE-EEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccc
Q 023642 132 FSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVT 210 (279)
Q Consensus 132 ~spd~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 210 (279)
+.+++..| +..-.++.+.+||..+.+.+..+.. ... ...+.+++..|+.+..++.|.++|..+.+........
T Consensus 70 i~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~-~~~-----Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~ 143 (243)
T 3mbr_X 70 IVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRY-PGE-----GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVT 143 (243)
T ss_dssp EEEETTEEEEEESSSSEEEEEETTTTEEEEEEEC-SSC-----CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred EEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeC-CCC-----ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEc
Confidence 33344544 4455688999999999987776432 222 2334467888877778999999999998875444332
Q ss_pred cccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 211 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
..... -..++.+.|. +|+.++..-.+..|.+.|.++|+.+..+.
T Consensus 144 ~~g~~-----------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 144 AGGRP-----------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWID 187 (243)
T ss_dssp ETTEE-----------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred cCCcc-----------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 11000 0145667765 67766665567899999999999999987
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0032 Score=51.55 Aligned_cols=121 Identities=14% Similarity=0.083 Sum_probs=73.1
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~ 199 (279)
.......+.++...+++. +..++.++.|..+|.. ++...... .....+.++.+.+++..++.. +.+..+| .
T Consensus 132 ~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~---~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~ 202 (330)
T 3hxj_A 132 FKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK---TNDAITSAASIGKDGTIYFGS---DKVYAIN-P 202 (330)
T ss_dssp EECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE---CSSCCCSCCEECTTCCEEEES---SSEEEEC-T
T ss_pred EcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe---cCCCceeeeEEcCCCEEEEEe---CEEEEEC-C
Confidence 333444566677777777 5557778999999998 75554422 223356677777788765544 7789999 6
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
+++....... ....+.++...++|... .++.++.|..+|. +++.+..+..
T Consensus 203 ~g~~~~~~~~----------------~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~-~g~~~~~~~~ 252 (330)
T 3hxj_A 203 DGTEKWNFYA----------------GYWTVTRPAISEDGTIY-VTSLDGHLYAINP-DGTEKWRFKT 252 (330)
T ss_dssp TSCEEEEECC----------------SSCCCSCCEECTTSCEE-EEETTTEEEEECT-TSCEEEEEEC
T ss_pred CCcEEEEEcc----------------CCcceeceEECCCCeEE-EEcCCCeEEEECC-CCCEeEEeeC
Confidence 6654322111 11245566667676544 3455666777763 4555555543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.022 Score=51.25 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=73.9
Q ss_pred CCC---CEEEEEeCCCcEEEEEcCCCeEEeeeeecc----------CCCcce--------------------------EE
Q 023642 134 ADG---SLFVAGFQASQIRIYDVERGWKIQKDILAK----------SLRWTV--------------------------TD 174 (279)
Q Consensus 134 pd~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~v--------------------------~~ 174 (279)
.+| ..++.++.+|.+.++|..+|+.+....... ....++ ..
T Consensus 318 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 397 (599)
T 1w6s_A 318 KDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGH 397 (599)
T ss_dssp TTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred cCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCC
Confidence 567 467778999999999999998766532111 000111 24
Q ss_pred EEECCCCCEEEEEe---------------------------------------CCCeEEEEECCCCceeeeeccccccce
Q 023642 175 TSLSPDQRHLVYAS---------------------------------------MSPIVHIVDVGSGTMESLANVTEIHDG 215 (279)
Q Consensus 175 ~~~sp~~~~l~~~~---------------------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~ 215 (279)
++++|+..++++.. .++.+..||+.+++.........
T Consensus 398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~---- 473 (599)
T 1w6s_A 398 DSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF---- 473 (599)
T ss_dssp CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS----
T ss_pred ccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC----
Confidence 56777766655432 23567777777776543221110
Q ss_pred eEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
....-.+...+..++.++.|+.|+.||.++|+.+-+++-.
T Consensus 474 -------------~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 474 -------------AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp -------------CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred -------------CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence 1111112235667777899999999999999999888743
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.017 Score=47.33 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=77.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeecc-----------------CCCcceEEEEECC-CCCEEEE
Q 023642 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-----------------SLRWTVTDTSLSP-DQRHLVY 186 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----------------~~~~~v~~~~~sp-~~~~l~~ 186 (279)
....+++|++++++++++..++.|..||..++.... ..... .....+..+++.| +++ |+.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence 445678899999978888889999999987653321 11000 0012478899998 554 555
Q ss_pred EeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec-CCCEEEEecC-----------------C
Q 023642 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSS-----------------D 248 (279)
Q Consensus 187 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~t~s~-----------------d 248 (279)
+...+.+..+|..++....+..... +. .......+++.+ +|++.++-.. +
T Consensus 97 ~d~~~~i~~~d~~~g~~~~~~~~~~---~~---------~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~ 164 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHATQLATSVD---GV---------PFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT 164 (322)
T ss_dssp EETTTEEEEECTTCEECEEEESEET---TE---------ECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred EECCCCEEEEeCCCCEEEEecccCC---CC---------cccccceEEEecCCCEEEEECCcccccccccceehcccCCC
Confidence 5555558888877654332211100 00 012467899999 9987776432 3
Q ss_pred CeEEEEECCCCeE
Q 023642 249 DCIYVYDLEANKL 261 (279)
Q Consensus 249 ~~i~vwd~~~~~~ 261 (279)
+.|..||..+++.
T Consensus 165 g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 165 GRLIKYDPSTKET 177 (322)
T ss_dssp EEEEEEETTTTEE
T ss_pred ceEEEEeCCCCEE
Confidence 6799999877754
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.011 Score=48.42 Aligned_cols=116 Identities=11% Similarity=-0.023 Sum_probs=72.6
Q ss_pred CCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC-CCcceEEEEECC-CCCEEEEEeC------------
Q 023642 125 SRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSLSP-DQRHLVYASM------------ 189 (279)
Q Consensus 125 ~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~sp-~~~~l~~~~~------------ 189 (279)
.....+++++ +++ |+.+...+.|..+|..++..........+ .......+++.| +|+.+++-..
T Consensus 80 ~~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 80 GRTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CCEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence 3578899998 555 54454445688888776532111000111 112478899999 9987776432
Q ss_pred -----CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe-cCCCeEEEEECCC
Q 023642 190 -----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEA 258 (279)
Q Consensus 190 -----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~-s~d~~i~vwd~~~ 258 (279)
++.+..||..+++....... -.....++|+|+|++|+.+ +..+.|.+|++..
T Consensus 159 ~~~~~~g~v~~~d~~~~~~~~~~~~-----------------~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKETTLLLKE-----------------LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp HHTCCCEEEEEEETTTTEEEEEEEE-----------------ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred cccCCCceEEEEeCCCCEEEEeccC-----------------CccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 36788888877764322110 0134678999999866544 5568899999874
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.041 Score=46.02 Aligned_cols=114 Identities=9% Similarity=0.076 Sum_probs=71.8
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccc
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 214 (279)
++..++.++.++.|..+|..+|+.+......... ...... .+..++.++.++.+..+|..+|+............
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~---~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEA---LSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL 176 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCC---CSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCce---EcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence 4567888889999999999999776553221111 111112 24577788889999999999998754332211000
Q ss_pred eeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 215 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
.... . ...... +..++.++.++.|..+|..+|+.+-+..
T Consensus 177 --~~~~-----~----~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~ 215 (376)
T 3q7m_A 177 --SLRG-----E----SAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQR 215 (376)
T ss_dssp ----CC-----C----CCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEE
T ss_pred --eecC-----C----CCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 0000 0 111122 4467778889999999999999887665
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.09 Score=43.85 Aligned_cols=114 Identities=13% Similarity=0.096 Sum_probs=74.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC------CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeec
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL------RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN 208 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 208 (279)
++..++.++.++.|..+|..+|+.+......... ...+.. ....++..++.++.++.+..+|..+|+......
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 4677888888899999999999776653321110 112222 222246678888899999999999998754322
Q ss_pred cccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
..... ...+ ... +..++.++.++.|+.+|..+|+.+-++..
T Consensus 131 ~~~~~------------~~~p----~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~ 171 (376)
T 3q7m_A 131 VAGEA------------LSRP----VVS--DGLVLIHTSNGQLQALNEADGAVKWTVNL 171 (376)
T ss_dssp CSSCC------------CSCC----EEE--TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCce------------EcCC----EEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence 21100 1111 122 44677788899999999999998877764
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.026 Score=48.57 Aligned_cols=119 Identities=14% Similarity=0.108 Sum_probs=73.2
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeC-CC----cEEEEEcCCCeE-EeeeeeccCCCcceEEEEECC-CCCEEEEEeCCCe
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQ-AS----QIRIYDVERGWK-IQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPI 192 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~-d~----~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~ 192 (279)
+.........++|++++++|+.+.. ++ .+.+++...... ..... . ......++++| ++.++++-..++.
T Consensus 174 ~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~---~-~~~p~giavdp~~g~lyv~d~~~~~ 249 (430)
T 3tc9_A 174 VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELT---K-GQNCNGAETHPINGELYFNSWNAGQ 249 (430)
T ss_dssp EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE---E-CSSCCCEEECTTTCCEEEEETTTTE
T ss_pred EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec---c-CCCceEEEEeCCCCEEEEEECCCCE
Confidence 3345566889999999996665543 22 233344332211 11111 1 12367789999 6666666667889
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEE-EecCCCeEEEEECC
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLE 257 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-t~s~d~~i~vwd~~ 257 (279)
|..++..++....+.... .......++|+|+|++|+ +-...+.|..++..
T Consensus 250 V~~~~~~~~~~~~~~~~~---------------~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 250 VFRYDFTTQETTPLFTIQ---------------DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEEETTTTEEEEEEECS---------------SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEECCCCcEEEEEEcC---------------CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 999999876542221110 012567899999999544 44567789998765
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0068 Score=49.52 Aligned_cols=114 Identities=10% Similarity=0.036 Sum_probs=72.8
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccce
Q 023642 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (279)
Q Consensus 136 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 215 (279)
+..+..++.++.|..+|.. +....... .....+.++...+++. +..++.++.+..||.. ++.......
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~---~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~------ 174 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFK---TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT------ 174 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEE---CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC------
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEc---CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec------
Confidence 5567778888999999988 65544322 2233456667777776 5556778899999998 665322211
Q ss_pred eEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
....+.++.+.+++..++.. +.|..+| .+++.+..+......+.++
T Consensus 175 ----------~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~ 220 (330)
T 3hxj_A 175 ----------NDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRP 220 (330)
T ss_dssp ----------SSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCC
T ss_pred ----------CCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceece
Confidence 01145556677777765544 7799999 7777776666444444433
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.015 Score=47.91 Aligned_cols=121 Identities=15% Similarity=0.191 Sum_probs=81.7
Q ss_pred CeEEEEE---CCCCCEEEEEe-------------CCCcEEEEEcC---CCeEEeeeeeccC-----------CCcceEEE
Q 023642 126 RAYVSQF---SADGSLFVAGF-------------QASQIRIYDVE---RGWKIQKDILAKS-----------LRWTVTDT 175 (279)
Q Consensus 126 ~V~~~~~---spd~~~l~s~~-------------~d~~i~iwd~~---~~~~~~~~~~~~~-----------~~~~v~~~ 175 (279)
.+..+.| .|+++++++.. .+..|..||+. +++.+... .+.. -.....++
T Consensus 64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDv 142 (334)
T 2p9w_A 64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQS 142 (334)
T ss_dssp EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEE
T ss_pred eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCcee
Confidence 4589999 68988887644 26789999999 77554332 1111 11247899
Q ss_pred EECCCCCEEEEEeCC-CeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEE
Q 023642 176 SLSPDQRHLVYASMS-PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (279)
Q Consensus 176 ~~sp~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vw 254 (279)
+..++|+..++++.. +.|..++........... ... ........+.++++|+|..|+.....+.|..+
T Consensus 143 avD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~-~~~----------~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~f 211 (334)
T 2p9w_A 143 AQDRDGNSYVAFALGMPAIARVSADGKTVSTFAW-ESG----------NGGQRPGYSGITFDPHSNKLIAFGGPRALTAF 211 (334)
T ss_dssp EECTTSCEEEEEEESSCEEEEECTTSCCEEEEEE-CCC----------CSSSCCSCSEEEEETTTTEEEEESSSSSEEEE
T ss_pred EECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeee-cCC----------CcccccCcceEEEeCCCCEEEEEcCCCeEEEE
Confidence 999999999998888 887777776543321111 000 00011246789999999988877669999999
Q ss_pred ECCC
Q 023642 255 DLEA 258 (279)
Q Consensus 255 d~~~ 258 (279)
|+.+
T Consensus 212 D~~~ 215 (334)
T 2p9w_A 212 DVSK 215 (334)
T ss_dssp ECSS
T ss_pred cCCC
Confidence 9874
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.17 Score=42.80 Aligned_cols=125 Identities=6% Similarity=-0.037 Sum_probs=78.4
Q ss_pred CCCCeEEEEECCCCCEEEEEe-CC-CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEECC
Q 023642 123 TTSRAYVSQFSADGSLFVAGF-QA-SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVG 199 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~ 199 (279)
.......++++|.+..|+.+. .. +.|..++++..... .+ ....-.....++|+|++..|+.+. ..+.|..+|+.
T Consensus 200 ~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~--~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 200 SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-II--ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EE--ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-EE--EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 346678999999766655443 44 68888888754221 11 112223478999998777665554 56789999987
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
......+... .......+++ ..+..+++-...+.|..+|..+|+.+..+..
T Consensus 277 G~~~~~~~~~----------------~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 277 GSHRKAVISQ----------------GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SCSCEEEECS----------------SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCeeEEEEEC----------------CCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 6443322211 0124567777 3455566666778899999777776666653
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.063 Score=46.18 Aligned_cols=117 Identities=9% Similarity=0.090 Sum_probs=72.6
Q ss_pred CCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-C----eEEEEEC
Q 023642 125 SRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P----IVHIVDV 198 (279)
Q Consensus 125 ~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~----~i~i~d~ 198 (279)
.....++|+| ++..|..+...+.|+.+|+..+... .+. ........++|++++++|+.+... + .+.+++.
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~---~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVY---SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEE---CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEe---cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence 4557889998 4666666655589999999877432 211 233458899999999976666542 1 3333443
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEec-CCCEEEEecCCCeEEEEECCCCeE
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKL 261 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~t~s~d~~i~vwd~~~~~~ 261 (279)
. +...... .+.. . .....++++| +|.++++-..++.|..++..++..
T Consensus 213 ~-g~~~~~~---------~l~~-~-----~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~ 260 (430)
T 3tc9_A 213 E-SGFKVIT---------ELTK-G-----QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET 260 (430)
T ss_dssp G-GTSCSEE---------EEEE-C-----SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE
T ss_pred C-Cceeeee---------eecc-C-----CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE
Confidence 2 2221000 0000 0 1356688999 677776666778899999887654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.18 Score=41.88 Aligned_cols=125 Identities=6% Similarity=0.005 Sum_probs=77.8
Q ss_pred CCCCCeEEEEECCCCCEEE-EEeCC-CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEEC
Q 023642 122 QTTSRAYVSQFSADGSLFV-AGFQA-SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDV 198 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~-s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~ 198 (279)
........++++|.+..|+ +-... +.|..++++..... .+ ....-.....++++|++..|+.+. ..+.|..+|+
T Consensus 156 ~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~--~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~ 232 (349)
T 3v64_C 156 QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-II--ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 232 (349)
T ss_dssp TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-ES--CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-EE--EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 3445678999999666554 44444 78888888754221 11 112223478999999777666554 5678999998
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
.......+... .......+++. .+..+++-...+.|..+|..+|+.+..+.
T Consensus 233 dG~~~~~~~~~----------------~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 233 DGSHRKAVISQ----------------GLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TSCSCEEEECS----------------SCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCceEEEEeC----------------CCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 76443322211 01245677773 45555566667889999876776665554
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.22 Score=41.40 Aligned_cols=124 Identities=18% Similarity=0.228 Sum_probs=82.4
Q ss_pred CCeEEEEE--CCC-CC-EEEEEeCCCcEEEEEcC---CC----eEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeE
Q 023642 125 SRAYVSQF--SAD-GS-LFVAGFQASQIRIYDVE---RG----WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (279)
Q Consensus 125 ~~V~~~~~--spd-~~-~l~s~~~d~~i~iwd~~---~~----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i 193 (279)
..++.+++ +|. +. +++....++.+..|++. .+ +.++.+ ...+.+..+...+....|+.+-.+.-|
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f----~lgsq~EgcvvDd~~g~Lyv~eEd~GI 203 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF----KMNSQTEGMAADDEYGRLYIAEEDEAI 203 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE----ECSSCEEEEEEETTTTEEEEEETTTEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe----cCCCCcceEEEcCCCCeEEEecccceE
Confidence 56777887 774 44 57788888999999883 33 233332 223468899999999999999999878
Q ss_pred EEEECCC-----CceeeeeccccccceeEEeeCCCCCccccEEEEEE--ecCCC-EEEEec-CCCeEEEEECC-CCeEEE
Q 023642 194 HIVDVGS-----GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF--STDGR-ELVAGS-SDDCIYVYDLE-ANKLSL 263 (279)
Q Consensus 194 ~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~g~-~l~t~s-~d~~i~vwd~~-~~~~~~ 263 (279)
..|+... ++........ .-...+..+++ .++++ +|++++ .+.++.+||.. +.+.+.
T Consensus 204 w~~da~p~~~~~~~~v~~~~~g--------------~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 204 WKFSAEPDGGSNGTVIDRADGR--------------HLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp EEEECSTTSCSCCEEEEEBSSS--------------SBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred EEEeCCcCCCCCceEEEEecCC--------------ccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 8888552 2221111000 01225777777 45556 666555 57799999997 677888
Q ss_pred EEe
Q 023642 264 RIL 266 (279)
Q Consensus 264 ~~~ 266 (279)
.|.
T Consensus 270 ~f~ 272 (355)
T 3amr_A 270 DFR 272 (355)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.22 Score=41.39 Aligned_cols=116 Identities=11% Similarity=0.083 Sum_probs=73.3
Q ss_pred CCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CC-CeEEEEECCCC
Q 023642 125 SRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MS-PIVHIVDVGSG 201 (279)
Q Consensus 125 ~~V~~~~~spd~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d-~~i~i~d~~~~ 201 (279)
.....+++.+.+. ++++-...+.|.+.+++..... . . ....-....+++++|.+..|+... .. +.|..+++...
T Consensus 116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~-l-~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~ 192 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-V-L-LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 192 (349)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-E-E-ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE-E-E-EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence 4557899998555 4455566789999998755321 1 1 122223578999999766665554 44 77888888764
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe-cCCCeEEEEECCCC
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEAN 259 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~-s~d~~i~vwd~~~~ 259 (279)
....+... .-.....++|+|++..|+.+ +..+.|..+|+...
T Consensus 193 ~~~~~~~~----------------~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 193 GRRIIADT----------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp SCEESCCS----------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEC----------------CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 43322110 11257889999876665544 45678999998643
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.034 Score=50.76 Aligned_cols=116 Identities=17% Similarity=0.169 Sum_probs=73.8
Q ss_pred CCcEEEEEcCCCeEEeeeeeccCC----------------------------CcceEEEEECCCCCEEEEEeCCC-----
Q 023642 145 ASQIRIYDVERGWKIQKDILAKSL----------------------------RWTVTDTSLSPDQRHLVYASMSP----- 191 (279)
Q Consensus 145 d~~i~iwd~~~~~~~~~~~~~~~~----------------------------~~~v~~~~~sp~~~~l~~~~~d~----- 191 (279)
++.|..+|..+|+.+......... ......+++.|+...++.+..++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~ 256 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR 256 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence 589999999999877664321110 00112468888888888887766
Q ss_pred --------------eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC---EEEEecCCCeEEEE
Q 023642 192 --------------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR---ELVAGSSDDCIYVY 254 (279)
Q Consensus 192 --------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~---~l~t~s~d~~i~vw 254 (279)
.|..+|..+|+.+....... +....+. .........+..+|+ .++.++.++.++++
T Consensus 257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~-~~~wd~~------~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~l 329 (668)
T 1kv9_A 257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTP-GDSWDFT------ATQQITLAELNIDGKPRKVLMQAPKNGFFYVL 329 (668)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST-TCCSCCC------CCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCC-Ccccccc------CCCCcEEEEeccCCcEEEEEEEECCCCEEEEE
Confidence 39999999999754433211 1000000 001222233334675 68889999999999
Q ss_pred ECCCCeEEEEEeC
Q 023642 255 DLEANKLSLRILA 267 (279)
Q Consensus 255 d~~~~~~~~~~~~ 267 (279)
|..+|+.+...+.
T Consensus 330 D~~tG~~l~~~~~ 342 (668)
T 1kv9_A 330 DRTNGKLISAEKF 342 (668)
T ss_dssp ETTTCCEEEEEES
T ss_pred ECCCCCEeccccc
Confidence 9999999866553
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.075 Score=45.74 Aligned_cols=120 Identities=14% Similarity=0.217 Sum_probs=70.0
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCC---Cc-EEEEEcCCCeEEeeeeeccCCCcceEEEEECC-CCCEEEEEeCCCeEE
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQA---SQ-IRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVH 194 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d---~~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~ 194 (279)
+.........++|+++|+++++-... .. +...+...+....... . .......++++| ++.++++-..++.|+
T Consensus 177 ~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~--~-~~~~P~giavd~~~G~lyv~d~~~~~V~ 253 (433)
T 4hw6_A 177 KTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSL--C-NARGAKTCAVHPQNGKIYYTRYHHAMIS 253 (433)
T ss_dssp ECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEE--E-ECSSBCCCEECTTTCCEEECBTTCSEEE
T ss_pred eecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccc--c-ccCCCCEEEEeCCCCeEEEEECCCCEEE
Confidence 33445668999999999955544321 12 3333332221100111 1 112356789999 666666666778999
Q ss_pred EEECCCCce-eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEE-EecCCCeEEEEECC
Q 023642 195 IVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLE 257 (279)
Q Consensus 195 i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-t~s~d~~i~vwd~~ 257 (279)
.+|..++.. ..+.... .......++|+|+|++|+ +-...+.|+.++..
T Consensus 254 ~~d~~~g~~~~~~~~~~---------------~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 254 SYDPATGTLTEEEVMMD---------------TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EECTTTCCEEEEEEECS---------------CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred EEECCCCeEEEEEeccC---------------CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 999987765 2221110 011345799999998554 44557799998865
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.57 Score=43.47 Aligned_cols=124 Identities=8% Similarity=0.092 Sum_probs=82.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeec-----cCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-----KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 198 (279)
...|.++...++|.+. .|+.++-|..||..++....-.... .-....|.++...++++.|..|..++-+.+||.
T Consensus 356 ~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp CSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred CCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence 4569999999988744 5777777999998876443221100 011346899999888885666777677999999
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEE
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~ 262 (279)
.+++.......... .....|.++...++|.+.+... + -|..||..+++..
T Consensus 435 ~~~~~~~~~~~~~~------------l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~ 484 (795)
T 4a2l_A 435 NSGQVENFNQRNSQ------------LVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFT 484 (795)
T ss_dssp TTCCEEEECTTTSC------------CSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEE
T ss_pred CCCcEEEeecCCCC------------cCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEE
Confidence 88876443221000 0223789999888888665443 4 4899998877543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.13 Score=40.76 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=74.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC---CeEEeeeee----ccCCCcceEEEEECCCCC-EEEEEeCCCeEEE
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVER---GWKIQKDIL----AKSLRWTVTDTSLSPDQR-HLVYASMSPIVHI 195 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~----~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~i 195 (279)
......++|+|+++.|.++.+.....+|.+.. ...+..... ...+...+.+++++|... +++....++.+.+
T Consensus 120 N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~ 199 (255)
T 3qqz_A 120 NCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQE 199 (255)
T ss_dssp SSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred cCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEE
Confidence 45579999999998887777666656665541 111111100 011223578999999654 5556667788899
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
+|.... ............+. .. --...-.|+|.++|+.+++ ++.+.++++.-.
T Consensus 200 ~d~~g~-~~~~~~L~~g~~~l--~~-----~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~~ 252 (255)
T 3qqz_A 200 VTLVGE-VIGEMSLTKGSRGL--SH-----NIKQAEGVAMDASGNIYIV-SEPNRFYRFTPQ 252 (255)
T ss_dssp ECTTCC-EEEEEECSTTGGGC--SS-----CCCSEEEEEECTTCCEEEE-ETTTEEEEEEC-
T ss_pred EcCCCC-EEEEEEcCCccCCc--cc-----ccCCCCeeEECCCCCEEEE-cCCceEEEEEec
Confidence 997654 44333333221110 00 0126788999999985555 777777777643
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.58 Score=43.52 Aligned_cols=124 Identities=7% Similarity=-0.049 Sum_probs=73.4
Q ss_pred eeCCCCCeEEEEECCCCCE-EEEEeCCCcEEEEEcCCCeEE-eeeeeccCCCcceEEEEECCCCCEEEE-EeCCCeEEEE
Q 023642 120 VDQTTSRAYVSQFSADGSL-FVAGFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIV 196 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~-l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~i~i~ 196 (279)
+......+..++|++.... +++-...+.|+.+++...... ...............|++.+.++.|+. -...+.|.+.
T Consensus 419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence 4445567889999985554 455556678999998753110 001112222335778999987765554 4467899999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC--CCeEEEEECCCC
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEAN 259 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~--d~~i~vwd~~~~ 259 (279)
++.+.....+... .-.....|++.|.+.+|+.... ...|.+.++...
T Consensus 499 ~ldG~~~~~l~~~----------------~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 499 DTKGVKRKTLFRE----------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 547 (791)
T ss_dssp ETTSSSEEEEEEC----------------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred eCCCCeEEEEEeC----------------CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence 9986654333211 1114678888887555554432 267888887643
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.34 E-value=0.41 Score=40.61 Aligned_cols=128 Identities=9% Similarity=-0.014 Sum_probs=79.7
Q ss_pred CCCCeEEEEECCCCCEEEEEe--CCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEECC
Q 023642 123 TTSRAYVSQFSADGSLFVAGF--QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVG 199 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~ 199 (279)
.......++++|.+.+|+.+. ..+.|...+++....... ....-.....++++|++..|+.+. ..+.|..+|+.
T Consensus 200 ~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~---~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 200 NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL---VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE---ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE---EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 445578999999766665544 237888888875432211 112223578999999887776665 56789999987
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
......+..... .......+++. .+..+++-...+.|..+|..+|+.+..+...
T Consensus 277 G~~~~~~~~~~~--------------~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~ 330 (400)
T 3p5b_L 277 GGNRKTILEDEK--------------RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAEN 330 (400)
T ss_dssp SCCCEEEEECSS--------------TTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECS
T ss_pred CCccEEEEeCCC--------------CCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecC
Confidence 655433221100 11245567763 3445556666778999998788766666543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.12 Score=43.06 Aligned_cols=113 Identities=15% Similarity=0.097 Sum_probs=62.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEE--eeeeeccCCCcceEEEEECCC---CCEEEEEeC-C-----Ce
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPD---QRHLVYASM-S-----PI 192 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~-d-----~~ 192 (279)
-..-..++|.|||+++++ ..++.|.+++ .+... ...............++|+|+ +..|+.+.. . ..
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 445678999999996555 5669999998 44321 111111122346889999998 555544332 2 56
Q ss_pred EEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 193 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
|..|+...+.......... .+.......| ....++|.|||.++++.+
T Consensus 107 v~r~~~~~~~~~~~~~l~~-----~~p~~~~~~h--~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLD-----GIPARPHGLH--SGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEECSSCEEEEEEEEE-----EECCCTTCCC--CCCCEEECTTSCEEEECC
T ss_pred EEEEEeCCCCcCceEEEEE-----eCCCCCCCCc--CCceEEECCCCCEEEEEC
Confidence 7788876543211100000 0110001113 235799999998776643
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.16 Score=41.79 Aligned_cols=128 Identities=13% Similarity=0.153 Sum_probs=76.8
Q ss_pred CCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCeEEeeeeeccC------CCcceEEEEE---CCCCCEEEEEe------
Q 023642 125 SRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKS------LRWTVTDTSL---SPDQRHLVYAS------ 188 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~------~~~~v~~~~~---sp~~~~l~~~~------ 188 (279)
---.+++|++....|..++ ..++|..||...+..... ...+ ....+..+.| .|+++++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~--~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV--VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE--CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE--ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 3345688988555555555 789999999986633322 1221 1124689999 69988877544
Q ss_pred -------CCCeEEEEECC---CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC-CeEEEEECC
Q 023642 189 -------MSPIVHIVDVG---SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-DCIYVYDLE 257 (279)
Q Consensus 189 -------~d~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d-~~i~vwd~~ 257 (279)
.+..+..||+. +++............+ +..... .-......++..++|+..++++.. +.|...+..
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~--~~~~~g-~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDE--FEKKAG-KRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHH--HHHHHS-SCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccc--cccccc-ccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 26789999999 6765433332111100 000000 000247788889999988887777 766666654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.4 Score=39.13 Aligned_cols=127 Identities=9% Similarity=-0.023 Sum_probs=79.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeC-C-CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEECC
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQ-A-SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVG 199 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~-d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~ 199 (279)
.......++++|.+..|+.+.. . +.|...+++.... ..+. ...-.....++++|++..|+.+. ..+.|..+|+.
T Consensus 118 ~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~~~--~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 118 NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLV--TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEE--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EEEE--ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 3456789999996665554443 2 6888888864422 2111 12223578999999877766555 56789999997
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
+.....+..... .-.....+++. .+..+++-...+.|..+|..+|+.+..+..
T Consensus 195 g~~~~~~~~~~~--------------~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 195 GGNRKTILEDEK--------------RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (316)
T ss_dssp SCSCEEEEECTT--------------TTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred CCceEEEeecCC--------------ccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEec
Confidence 644332211100 11245677775 455556666678999999877776666653
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.073 Score=44.47 Aligned_cols=112 Identities=12% Similarity=0.094 Sum_probs=62.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-EEeeeeeccCCCcceEEEEECCC---CCEEEEEeC----C----C
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPD---QRHLVYASM----S----P 191 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~----d----~ 191 (279)
-..-..++|.|||+++++ ..++.|+++| ..+. .+...............++|+|+ +..|+.+.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 355688999999985554 5569999997 3454 11111011122345889999998 445444332 3 5
Q ss_pred eEEEEECCCCc--eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 192 IVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 192 ~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
.|..|+..... ....... ... +.. ...| ....++|.|||.++++.+
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l---~~~--~~~--~~~h--~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTL---IDG--IPG--AYIH--NGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEE---EEE--EEC--CSSC--CCCCEEECTTSCEEEECC
T ss_pred EEEEEEECCCCcCcCccEEE---EEc--CCC--CCCc--CCceEEECCCCcEEEEEC
Confidence 67777776541 1100000 000 111 1113 245789999998777643
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.23 Score=41.33 Aligned_cols=121 Identities=15% Similarity=0.098 Sum_probs=67.3
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeee-e--eccCCCcceEEEEECCC---CCEEEEE-e--CC
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD-I--LAKSLRWTVTDTSLSPD---QRHLVYA-S--MS 190 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~-~--~~~~~~~~v~~~~~sp~---~~~l~~~-~--~d 190 (279)
+...-..-..++|.|||+++++--..|+|++++...+...... . ...........++|+|+ +..|+.. + .+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 3444566789999999998877765899999987666432110 0 11223456899999996 3444332 2 34
Q ss_pred CeEEEEECCCCce--eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 191 PIVHIVDVGSGTM--ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 191 ~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
..|.-|.+..+.. ..+......... + +. ...| ....+.|.|||.++++.+
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~--~-p~-~~~H--~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRG--I-PK-GVIH--NGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEE--E-CC-CSSC--CCCCEEECTTSCEEEECB
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEc--C-CC-CCCc--cCccccCCCCCCEEEEEC
Confidence 4566666654221 000000000000 1 11 1124 346799999998877744
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.33 Score=41.69 Aligned_cols=139 Identities=12% Similarity=0.116 Sum_probs=79.1
Q ss_pred CCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEE-eCCCeEEEEECCC--
Q 023642 125 SRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGS-- 200 (279)
Q Consensus 125 ~~V~~~~~sp-d~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~i~d~~~-- 200 (279)
.....++++| ++.++++-..++.|+.+|..++........... ...-..++|+|++++|+.+ ...+.|+.++...
T Consensus 228 ~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~ 306 (433)
T 4hw6_A 228 RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT-KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRET 306 (433)
T ss_dssp SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTT
T ss_pred CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCC
Confidence 3446688999 777766766778999999987754222222212 2223579999999965554 4568899988653
Q ss_pred Cceeeeecccc--ccceeEEeeCCCCCccccEEEEEE---------ecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 201 GTMESLANVTE--IHDGLDFSAADDGGYSFGIFSLKF---------STDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 201 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~---------sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
+.......... ...+.. .+......-.....+++ .++|.++++-...+.|+.++. +| .+.++.+
T Consensus 307 ~~~~~~~~~ag~~g~~g~~-dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G-~v~t~~G 381 (433)
T 4hw6_A 307 GKLAVPYIVCGQHSSPGWV-DGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG-RVTTYAG 381 (433)
T ss_dssp CCBCCCEEEEECTTCCCCB-CEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS-EEEEEEC
T ss_pred cccCcEEEEEecCCCCccC-CCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC-CEEEEEe
Confidence 32110000000 000000 00000001124678999 677777777777789999985 56 4445543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.71 Score=42.80 Aligned_cols=124 Identities=12% Similarity=0.066 Sum_probs=81.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeee-ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL-AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
...|.++...+++++|..|+.++-|.+||..+++...-... .......|.++...++|++.+... + -+.+||..+++
T Consensus 405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~ 482 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRS 482 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTE
T ss_pred CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCe
Confidence 35789999999998677778777899999988754322100 001234689999998888766554 4 48889988776
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeE
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~ 261 (279)
......... ... -....|.++...++|.+.+... +-|..||..+++.
T Consensus 483 ~~~~~~~~~-~~~---------~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 483 FTTIEKEKD-GTP---------VVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI 529 (795)
T ss_dssp EEECCBCTT-CCB---------CCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE
T ss_pred EEEcccccc-ccc---------cCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE
Confidence 543221100 000 0123789999999988766544 4488999877765
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=95.90 E-value=0.68 Score=39.23 Aligned_cols=121 Identities=7% Similarity=-0.076 Sum_probs=71.7
Q ss_pred eeCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCe---EEeeeeeccCCCcceEEEEECCCCCEE-EEEeCCCeEE
Q 023642 120 VDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGW---KIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVH 194 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l-~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~i~ 194 (279)
+......+..++|++.+..| ++-...+.|+.+++.... .... ...........+++.+.+..| ++-...+.|.
T Consensus 107 ~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~--~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~ 184 (400)
T 3p5b_L 107 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 184 (400)
T ss_dssp EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEE--EECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceE--EEeCCCCCcccEEEEecCCceEEEECCCCeEE
Confidence 44456778999999866555 454566889999987521 1111 112223357889999855544 4555678899
Q ss_pred EEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec-C-CCeEEEEECCC
Q 023642 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-S-DDCIYVYDLEA 258 (279)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s-~-d~~i~vwd~~~ 258 (279)
+.++.+.....+... .-.....+++.|.+.+|+... . .+.|...++..
T Consensus 185 ~~~~~g~~~~~l~~~----------------~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 185 VADTKGVKRKTLFRE----------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp EECTTTCSEEEEEEC----------------SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred EEeCCCCceEEEEeC----------------CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 999876654333211 011467788888655554433 2 35677777753
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=95.81 E-value=0.62 Score=38.10 Aligned_cols=125 Identities=10% Similarity=0.028 Sum_probs=78.2
Q ss_pred CCCCCeEEEEECCCCCEEEEEe--CCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEEC
Q 023642 122 QTTSRAYVSQFSADGSLFVAGF--QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDV 198 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~ 198 (279)
........++++|.+.+|+.+. ..+.|...+++..... .+ ....-.....++++|++..|+.+. ..+.|..+|+
T Consensus 119 ~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~--~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~ 195 (318)
T 3sov_A 119 QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-II--INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 195 (318)
T ss_dssp SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE-EE--ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE-EE--EECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence 4456678999999766665554 3578888888743221 11 111123468999999777766554 5678999998
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
.......+... .......+++.. +..+.+-...+.|..+|..+|+.+..+.
T Consensus 196 dG~~~~~~~~~----------------~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 196 DGTNRQAVVKG----------------SLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TSCSCEEEECS----------------CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCceEEEecC----------------CCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 76443322210 112456777753 3455565567889999988777655554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.81 Score=38.51 Aligned_cols=120 Identities=7% Similarity=-0.045 Sum_probs=72.9
Q ss_pred eeCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEE-EEEeCCCeEEEEE
Q 023642 120 VDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVD 197 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~i~i~d 197 (279)
+.........++|++.+..| ++-...+.|..++++.+..... . .........+++.+.+..| ++-...+.|.+++
T Consensus 111 ~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~-~--~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~ 187 (386)
T 3v65_B 111 LLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV-V--STGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 187 (386)
T ss_dssp EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE-E--CSSCSCCCCEEEETTTTEEEEEETTTTEEEECB
T ss_pred EecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE-E--eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEe
Confidence 33445668899999865555 5555678999999887643221 1 1222245778998865555 4445567888888
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec-CC-CeEEEEECCC
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SD-DCIYVYDLEA 258 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s-~d-~~i~vwd~~~ 258 (279)
+.+.....+... .-.....+++.|.+..|+... .. +.|..+++..
T Consensus 188 ~dg~~~~~l~~~----------------~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 188 LDGAHRKVLLWQ----------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp TTSCSCEEEECS----------------SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCCCceEEeecC----------------CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 875543222110 112567888888766555443 33 6788888764
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=95.66 E-value=0.72 Score=37.72 Aligned_cols=116 Identities=9% Similarity=0.048 Sum_probs=73.6
Q ss_pred CCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC--CCeEEEEECCC
Q 023642 124 TSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM--SPIVHIVDVGS 200 (279)
Q Consensus 124 ~~~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~~i~i~d~~~ 200 (279)
......+++.+.+ .++++-...+.|.+++++..... .. ..........+++.|.+..|+.+.. .+.|..+++..
T Consensus 78 l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l--~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 154 (318)
T 3sov_A 78 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-VL--FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG 154 (318)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE--ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS
T ss_pred CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE-EE--EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC
Confidence 3456778999754 45555566789999998754221 11 1122335789999997777666653 57888888865
Q ss_pred CceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe-cCCCeEEEEECCC
Q 023642 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEA 258 (279)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~-s~d~~i~vwd~~~ 258 (279)
.....+... .-.....++|+|++..|+.+ +..+.|..+|+..
T Consensus 155 ~~~~~~~~~----------------~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 155 SSRFIIINS----------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp CSCEEEECS----------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCeEEEEEC----------------CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 443222110 01256889999876665544 4567899998864
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.38 Score=41.63 Aligned_cols=113 Identities=10% Similarity=0.058 Sum_probs=62.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeecc------CCCcceEEEEECCC---CCEEEEEe-C----
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK------SLRWTVTDTSLSPD---QRHLVYAS-M---- 189 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~v~~~~~sp~---~~~l~~~~-~---- 189 (279)
-..-..++|.|+|+++++-...+.|++++..++.... +..+. ........++|+|+ +..|+.+. .
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~-~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT-VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE-EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 3456799999999987776554578888876553321 11111 12346789999996 55544333 2
Q ss_pred --------CCeEEEEECCCCc--eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 190 --------SPIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 190 --------d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
...|.-|++..+. ......+. .-.+.. ..| ....++|.|||.++++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~------~~~p~~-~~H--~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLL------AGLPSS-KDH--QSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEE------EEECCC-SSC--CEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEE------EcCCCC-CCC--CCCeEeECCCCeEEEEEC
Confidence 1345555554321 11000000 000111 113 578999999998777644
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.54 Score=40.13 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=72.1
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC--CCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecc-c
Q 023642 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS--LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV-T 210 (279)
Q Consensus 134 pd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~ 210 (279)
.+|..++.+-. +.||.-++...... +...... .-..|..+..+|+|++||..+ +..|.|..+..+........ .
T Consensus 30 ~n~t~i~~a~~-n~iR~~~i~~~~~Y-k~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 30 QNGTRIVFIQD-NIIRWYNVLTDSLY-HSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTTEEEEEET-TEEEEEETTTCSSC-EEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred cCCCEEEEEEC-CEEEEEECCCCCcc-eEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 35555555543 67888787744221 2222221 122578899999999999875 45899998884432111000 0
Q ss_pred cccceeEEeeCC-CCCccccEEEEEEecC---CCEEEEecCCCeEEEEECCC
Q 023642 211 EIHDGLDFSAAD-DGGYSFGIFSLKFSTD---GRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 211 ~~~~~~~~~~~~-~~~~~~~v~~~~~sp~---g~~l~t~s~d~~i~vwd~~~ 258 (279)
.......|.-.. .......|..+.|+|- +..|++-..|+.|++||+..
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 000001111110 0012458999999994 56899999999999999975
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.029 Score=50.16 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=41.4
Q ss_pred CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeee
Q 023642 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (279)
Q Consensus 145 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 207 (279)
++.|..||+.+++.+.+.... ..+....+...+..++.++.|+.++.||.++++.+...
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEK----FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCC----CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence 478999999999776654321 12222223335667788999999999999999986543
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.33 Score=42.45 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=70.4
Q ss_pred CCeEEEEECC-CCC-EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE-------CCCCCEEEEEeCCC----
Q 023642 125 SRAYVSQFSA-DGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL-------SPDQRHLVYASMSP---- 191 (279)
Q Consensus 125 ~~V~~~~~sp-d~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-------sp~~~~l~~~~~d~---- 191 (279)
.....|+|+| +.. ++++-...+.|++.|+..+..................++| ++++++|+.+...+
T Consensus 139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp CSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 4577899999 344 4444444578999999887443221111112235899999 99999777666543
Q ss_pred ---eEEEEECCC-CceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEecCCCeEEEEECC
Q 023642 192 ---IVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 192 ---~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s~d~~i~vwd~~ 257 (279)
.+.+++... +........ . .+.. . .....++++|+ +.++++-..++.|+.+|+.
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~-~-----~v~~-~-----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDI-Q-----LIAA-Y-----KQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCE-E-----EEEE-E-----SCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred cCceEEEEecCCCCceeecccc-e-----eecc-C-----CCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 266666433 222100000 0 0000 0 03456788995 5555566677889999987
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.73 Score=40.26 Aligned_cols=123 Identities=11% Similarity=0.068 Sum_probs=69.1
Q ss_pred CCeEEEEE-------CCCCCEEEEEeCCC-------cEEEEEcCC-CeEE-----eeeeeccCCCcceEEEEECCCCCE-
Q 023642 125 SRAYVSQF-------SADGSLFVAGFQAS-------QIRIYDVER-GWKI-----QKDILAKSLRWTVTDTSLSPDQRH- 183 (279)
Q Consensus 125 ~~V~~~~~-------spd~~~l~s~~~d~-------~i~iwd~~~-~~~~-----~~~~~~~~~~~~v~~~~~sp~~~~- 183 (279)
.....++| ++++.+|+.+...+ .|.+++... +... ...... . ....++++|++..
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~---~p~giavdp~~g~L 261 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-K---QCNGATIHPINGEL 261 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-S---CCCCEEECTTTCCE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-C---CceEEEEcCCCCeE
Confidence 35899999 99999776665543 255665444 2221 111111 1 3457889995544
Q ss_pred EEEEeCCCeEEEEECC-------CCce-eeeecccc-ccceeEEeeCCCCCccccEEEEEEecCCCEE-EEecCCCeEEE
Q 023642 184 LVYASMSPIVHIVDVG-------SGTM-ESLANVTE-IHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYV 253 (279)
Q Consensus 184 l~~~~~d~~i~i~d~~-------~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~t~s~d~~i~v 253 (279)
+++-..++.|..+|+. ++.. ........ ....+...+ ...+.+.++|+|+|++| ++-+....|+.
T Consensus 262 Yvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~-----~~~~p~~ia~~p~G~~lYvaD~~~h~I~k 336 (496)
T 3kya_A 262 YFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIA-----DPSWEFQIFIHPTGKYAYFGVINNHYFMR 336 (496)
T ss_dssp EEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECS-----SSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEECCCCEEEEEecccccccccCceeecccccccccccceeEecC-----CCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence 5556677889999987 5543 00000000 000000001 11256899999999954 44456778998
Q ss_pred EEC
Q 023642 254 YDL 256 (279)
Q Consensus 254 wd~ 256 (279)
++.
T Consensus 337 id~ 339 (496)
T 3kya_A 337 SDY 339 (496)
T ss_dssp EEE
T ss_pred Eec
Confidence 654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.79 Score=36.97 Aligned_cols=125 Identities=11% Similarity=0.063 Sum_probs=67.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCC--cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 023642 124 TSRAYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~ 201 (279)
......++++|+|+++++..... .|..+|..+++.... ... ........++..+++..+++-..++.|+.+|..++
T Consensus 71 ~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~-~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 71 EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL-LTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE-EEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE-EeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence 45688999999999766654432 477778777754321 111 11223455565565555555546889999998765
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEE-ecCCCeEEEEECCC
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEA 258 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t-~s~d~~i~vwd~~~ 258 (279)
............. .... ..-.....+ +|++++|+. -...+.|..+++..
T Consensus 149 ~~~v~~~~~~~~~---~~~~---~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 149 SGSIWLEHPMLAR---SNSE---SVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS 198 (306)
T ss_dssp EEEEEEECGGGSC---SSTT---CCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred cEeEEEECCcccc---cccc---CCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence 3211100000000 0000 001134445 788776554 44567899998864
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.39 Score=39.88 Aligned_cols=127 Identities=12% Similarity=0.198 Sum_probs=74.6
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC----CC---EEEEEe-C--CCeEEEEEC--CCC
Q 023642 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD----QR---HLVYAS-M--SPIVHIVDV--GSG 201 (279)
Q Consensus 134 pd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~---~l~~~~-~--d~~i~i~d~--~~~ 201 (279)
|...+++.....+-+.+||+ +|+.+... .. +.+..+.+-|+ |+ ++++.. . ++++.+|++ .++
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~---~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~ 111 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKMLHSY---NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG 111 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEEEEE---CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEEEEc---cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC
Confidence 35567777788889999999 67666542 11 34677777663 22 233333 3 578999976 444
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEE--ecC-CC-EEEEecCCCeEEEEEC-------CCCeEEEEEeCCCc
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF--STD-GR-ELVAGSSDDCIYVYDL-------EANKLSLRILAHTV 270 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~-g~-~l~t~s~d~~i~vwd~-------~~~~~~~~~~~h~~ 270 (279)
....+...... + ... ...++.+++ +|. ++ +++....++.+..|++ .+++.+.+|.-..+
T Consensus 112 ~l~~i~~~~~p-----v-~t~----~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq 181 (355)
T 3amr_A 112 TLQSMTDPDHP-----I-ATA----INEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ 181 (355)
T ss_dssp CEEECSCTTSC-----E-ECC----CSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC
T ss_pred ceeeccccccC-----c-CCC----CCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC
Confidence 43222110000 0 000 015666777 774 54 5667778899999988 34567788875554
Q ss_pred ceeEEE
Q 023642 271 NIALWI 276 (279)
Q Consensus 271 ~v~~v~ 276 (279)
.-.|++
T Consensus 182 ~Egcvv 187 (355)
T 3amr_A 182 TEGMAA 187 (355)
T ss_dssp EEEEEE
T ss_pred cceEEE
Confidence 444443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.058 Score=49.50 Aligned_cols=125 Identities=10% Similarity=0.000 Sum_probs=73.5
Q ss_pred CCeEEEEECCCCCEEEEEe-C-CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEE-EeCCCeEEEEECCCC
Q 023642 125 SRAYVSQFSADGSLFVAGF-Q-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSG 201 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~i~i~d~~~~ 201 (279)
.....++++|++.+|+.+. . .++|.+++++.... .. + ....-.....|+|+|++..|+. -...+.|..+|+.+.
T Consensus 496 ~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~-l-~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 496 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS-L-VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CE-E-SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eE-E-EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 4457788998655554443 2 26788877764321 11 1 1111224678999998665554 446678999998764
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
....+..... .......+++..+ .++++....+.|..+|..+|+.+..+..
T Consensus 573 ~~~~~~~~~~--------------~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 573 NRKTILEDEK--------------RLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp CCEEECCCSS--------------SCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred ceEEEEecCC--------------cCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 4332221100 0012344555543 4455555678999999988988887754
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.95 Score=36.82 Aligned_cols=117 Identities=7% Similarity=-0.100 Sum_probs=69.9
Q ss_pred CCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCC---eEEeeeeeccCCCcceEEEEECCCCCEE-EEEeCCCeEEEEE
Q 023642 123 TTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERG---WKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVD 197 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l-~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~i~i~d 197 (279)
.......++|++++..| ++-...+.|..+++... ...... ....-.....+++.+.+..| ++-...+.|.+++
T Consensus 28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~--~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~ 105 (316)
T 1ijq_A 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 105 (316)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE--ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE--EeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEe
Confidence 34667899999866555 55556689999998761 111111 11122246789998765555 4445678999999
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-C-CeEEEEECC
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-D-DCIYVYDLE 257 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d-~~i~vwd~~ 257 (279)
+.+.....+... . -.....+++.|.+..|+.+.. . +.|...++.
T Consensus 106 ~~g~~~~~~~~~-----------~-----~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d 151 (316)
T 1ijq_A 106 TKGVKRKTLFRE-----------N-----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 151 (316)
T ss_dssp TTSSSEEEEEEC-----------T-----TCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCCCceEEEEEC-----------C-----CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC
Confidence 876544322210 0 115678888886665544433 2 678888875
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.14 Score=39.66 Aligned_cols=115 Identities=12% Similarity=-0.010 Sum_probs=65.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE-----EeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 023642 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK-----IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~ 199 (279)
..+..++|+|+|.+.+. .++.+.-.+..++.. ..+.+-..+... ..++.|.|+|.+.++ .||.|+-++-.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 36779999999997776 667766666544210 001110112222 578999999998888 55888877654
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
+......... .-.+ +. +--..+..+.|.|+|.+.+.. |+.++-+.
T Consensus 116 ~~~~~~Wl~~-----a~~v-g~---~gw~~~~~lff~p~G~Lyav~--dg~lyr~~ 160 (236)
T 1tl2_A 116 QSDTDNWIAR-----ATEV-GS---GGWSGFKFLFFHPNGYLYAVH--GQQFYKAL 160 (236)
T ss_dssp CSTTCCHHHH-----SEEE-EC---SSGGGEEEEEECTTSCEEEEE--TTEEEEEC
T ss_pred cCCCCceecc-----ccEe-cc---CCCCceEEEEECCCceEEEEe--CCcEEecC
Confidence 3222111100 0000 00 011257889999999877766 67654433
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.26 E-value=1.9 Score=40.09 Aligned_cols=127 Identities=9% Similarity=-0.028 Sum_probs=78.7
Q ss_pred CCCCCeEEEEECCCCCEEEEEe-C-CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEEC
Q 023642 122 QTTSRAYVSQFSADGSLFVAGF-Q-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDV 198 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~ 198 (279)
........|+++|.+.+|+.+. . .++|...+++..... .+ ....-.....|++.|.+..|+.+. ..+.|..+++
T Consensus 511 ~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-~l--v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~ 587 (791)
T 3m0c_C 511 ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SL--VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 587 (791)
T ss_dssp CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EE--ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-EE--EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence 4455688999999766665554 2 368888888754322 21 122223588999998777766655 4568999999
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
.+.....+..... .-.....|++.. +.++++-...+.|...|..+|+.+..+.
T Consensus 588 dG~~~~~v~~~~~--------------~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 588 NGGNRKTILEDEK--------------RLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TSCSCEEEEECTT--------------TTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CCCceEEEecCCC--------------ccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 7655433321100 111345666643 3444455567789999988887666664
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.049 Score=48.86 Aligned_cols=60 Identities=12% Similarity=-0.001 Sum_probs=41.6
Q ss_pred CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeec
Q 023642 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN 208 (279)
Q Consensus 145 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 208 (279)
++.|..||+.+++.+.+..... ++..-.+...+.+++.++.|+.++.||.++|+.+....
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL----PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS----CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCC----CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 5789999999998766543221 12111122246788889999999999999999865443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.83 E-value=1.5 Score=40.54 Aligned_cols=120 Identities=9% Similarity=0.091 Sum_probs=75.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
...|.++...++|.+. .|+.++-|..||..++....-..........|.++...+++.+.+ |..++-+..+|..+++.
T Consensus 362 ~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~ 439 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF 439 (781)
T ss_dssp SSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEE
T ss_pred CcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcE
Confidence 3568999998887754 556556688999876532211000012234689998888887655 56656688899887765
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeE
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~ 261 (279)
...... . .....|.++...++|.+.+. +. +-|..||..+++.
T Consensus 440 ~~~~~~-~-------------~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 440 QIIELE-K-------------NELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKV 481 (781)
T ss_dssp EECCST-T-------------TCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSC
T ss_pred EEeccC-C-------------CCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeE
Confidence 432211 0 01237889988888875544 44 4589999877654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.69 Score=38.45 Aligned_cols=74 Identities=14% Similarity=0.176 Sum_probs=43.6
Q ss_pred CCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeEEeeee----eccCCCcceEEEEECCC---CCEEEEE-eC------
Q 023642 125 SRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDI----LAKSLRWTVTDTSLSPD---QRHLVYA-SM------ 189 (279)
Q Consensus 125 ~~V~~~~~spd~~-~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~v~~~~~sp~---~~~l~~~-~~------ 189 (279)
..-..++|.|+|+ +++ +...++|++++.. +.....+. ...........++|+|+ +..|+.+ ..
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 4567899999999 554 4567999999854 32211110 01122345789999996 4444433 22
Q ss_pred -CCeEEEEECCC
Q 023642 190 -SPIVHIVDVGS 200 (279)
Q Consensus 190 -d~~i~i~d~~~ 200 (279)
...|..|++..
T Consensus 96 ~~~~v~r~~~~~ 107 (353)
T 2g8s_A 96 AGTAVGYGRLSD 107 (353)
T ss_dssp EEEEEEEEEECT
T ss_pred ceeEEEEEEECC
Confidence 23566666654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.74 E-value=2.1 Score=39.55 Aligned_cols=119 Identities=8% Similarity=0.033 Sum_probs=73.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC-CCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
...|.++...++|.+.+. +.++-|..||..+++...- ....+ ....|.++...++|.+.++.. +|.+..||..+++
T Consensus 494 ~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~~-~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 494 ENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRKF-NQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFD 570 (781)
T ss_dssp CSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEEE-CTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred cceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEEc-cCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCc
Confidence 467999999999886554 4434478888877643221 11111 134688999999988766554 6765888888776
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCe
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~ 260 (279)
.......... -...|.++...++|.+.+++ ..| |..+|..+++
T Consensus 571 ~~~~~~~~gl-------------~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~~~~~ 613 (781)
T 3v9f_A 571 YQVFQRKEGL-------------PNTHIRAISEDKNGNIWAST-NTG-ISCYITSKKC 613 (781)
T ss_dssp CEEECGGGTC-------------SCCCCCEEEECSSSCEEEEC-SSC-EEEEETTTTE
T ss_pred EEEccccCCC-------------CCceEEEEEECCCCCEEEEc-CCc-eEEEECCCCc
Confidence 4332211100 11256788888888766554 344 7778876554
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=94.51 E-value=1.5 Score=35.84 Aligned_cols=116 Identities=10% Similarity=0.090 Sum_probs=65.4
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeec-cCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~ 201 (279)
....+..++++|+++.++ ++.+|.+++.+.+.++........ ......+.++++.|++..++.+. ++.+ ++....|
T Consensus 203 ~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG 279 (327)
T 2xbg_A 203 TSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG 279 (327)
T ss_dssp SSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT
T ss_pred CCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC
Confidence 456788899999987664 456788877754445433321111 11223588999998877766654 5655 3334434
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
+.-....... .....++++.|.++++ ++.++.++.|.-++
T Consensus 280 ~tW~~~~~~~-------------~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 280 QTWQQDVDVK-------------KVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp SSCEECGGGT-------------TSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred cccEEcCccC-------------CCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 3211111000 0112567888876555 55556688776665
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.2 Score=41.51 Aligned_cols=124 Identities=6% Similarity=0.010 Sum_probs=70.3
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEE--CCCCCEEEEE--eCCCeEEEEECCCCceeeeeccccc
Q 023642 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL--SPDQRHLVYA--SMSPIVHIVDVGSGTMESLANVTEI 212 (279)
Q Consensus 137 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~ 212 (279)
.+++.++.||.|.-.|..+|+........ ...++....- .+.+..++.. ..||.+..++..+|...........
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 47889999999999999999877764321 1112222110 1112233333 5899999999988855322221111
Q ss_pred cceeEEeeCCCCCccccEE-EEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 213 HDGLDFSAADDGGYSFGIF-SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 213 ~~~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
...-.+..... +|. ..-=+..+..+++|+.++.+...|+++|+.+.++..
T Consensus 89 v~~SP~~~~~~-----pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 89 VSTSPLHLKTN-----IVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HTTCSEEEECC---------------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eeccccccCCC-----ceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 10000000000 110 000001455788999999999999999999988863
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.37 Score=43.28 Aligned_cols=119 Identities=11% Similarity=0.127 Sum_probs=71.8
Q ss_pred CCEEEEEeC-CCcEEEEEc-CCCeEEeeeeeccCCC--------cceEEEEECCCCCE----EEEEeCCCeEEEEECCCC
Q 023642 136 GSLFVAGFQ-ASQIRIYDV-ERGWKIQKDILAKSLR--------WTVTDTSLSPDQRH----LVYASMSPIVHIVDVGSG 201 (279)
Q Consensus 136 ~~~l~s~~~-d~~i~iwd~-~~~~~~~~~~~~~~~~--------~~v~~~~~sp~~~~----l~~~~~d~~i~i~d~~~~ 201 (279)
+..++.++. ++.|.-+|. .+|+.+.+........ .....++++|.+.. |+.++.|+.+..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456666676 889999999 8998776643211100 01133556554444 888889999999999999
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec------CCCeEEEEECCCCeEEEEEeC
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------SDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s------~d~~i~vwd~~~~~~~~~~~~ 267 (279)
+.+.............+ ...++ . .++ .++.++ .++.|+-+|.++|+.+-++..
T Consensus 142 ~~~W~~~~~~~~~~~~~-------~ssP~----v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTL-------TIAPY----V-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp CEEEEEECCCGGGTCBC-------CSCCE----E-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CEEEeecCCCCCcccee-------ecCCE----E-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 98543322111000000 00111 1 144 444444 378999999999999877764
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=94.27 E-value=0.16 Score=46.56 Aligned_cols=114 Identities=7% Similarity=-0.047 Sum_probs=67.1
Q ss_pred CeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC-C-CeEEEEECCCCc
Q 023642 126 RAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-S-PIVHIVDVGSGT 202 (279)
Q Consensus 126 ~V~~~~~spd~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d-~~i~i~d~~~~~ 202 (279)
....+++.+.+ +++++-...+.|.++++...... .+ ..........+++.|.+.+|+.+.. . +.|..+++....
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~-~l--~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~ 530 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-TL--FREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 530 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEE-EE--CCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceE-EE--EeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC
Confidence 34568888644 44555556788999998765322 21 1122234678999997666555443 2 677777765433
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEE-EEecCCCeEEEEECCC
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEA 258 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~t~s~d~~i~vwd~~~ 258 (279)
...+... .-.....|+|+|++..| ++-+..+.|.++++..
T Consensus 531 ~~~l~~~----------------~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 531 IYSLVTE----------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CCEESCS----------------SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred eeEEEeC----------------CCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 2211110 01145678999875544 4445567899999864
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=93.75 E-value=1.2 Score=38.61 Aligned_cols=117 Identities=14% Similarity=0.014 Sum_probs=60.1
Q ss_pred CCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCe---EEeeee--ecc----CCCcceEEEEECCC----CCEEEEEeC-
Q 023642 125 SRAYVSQFSADGS-LFVAGFQASQIRIYDVERGW---KIQKDI--LAK----SLRWTVTDTSLSPD----QRHLVYASM- 189 (279)
Q Consensus 125 ~~V~~~~~spd~~-~l~s~~~d~~i~iwd~~~~~---~~~~~~--~~~----~~~~~v~~~~~sp~----~~~l~~~~~- 189 (279)
..-..|+|.||+. .|+.+...|.|++++.+... .+..+. ... ........|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4457899999996 45556678999999754321 111100 011 11346889999997 443333221
Q ss_pred -C----------CeEEEEECCCCc--eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC
Q 023642 190 -S----------PIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (279)
Q Consensus 190 -d----------~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~ 247 (279)
+ ..|.-|.+..+. ....... ..-+.+... ...| ....++|.|||.+.++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~---~~i~~~~~~-~~~H--~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTA---RVFLEVAEL-HRKH--LGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGC---EEEEEEEES-SSSS--CEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCc---eEEEEcCCC-CCcc--cCCcEeECCCCcEEEEeCC
Confidence 1 134446654321 1000000 000011111 1124 4678999999987776554
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=3 Score=34.70 Aligned_cols=114 Identities=12% Similarity=0.059 Sum_probs=65.2
Q ss_pred CeEEEEECC--CCC-EEEEE-eC--CCcEEEEEcCCC-eEEeeeeeccC-CCcceEEEEECCCCCEEEEEeC--------
Q 023642 126 RAYVSQFSA--DGS-LFVAG-FQ--ASQIRIYDVERG-WKIQKDILAKS-LRWTVTDTSLSPDQRHLVYASM-------- 189 (279)
Q Consensus 126 ~V~~~~~sp--d~~-~l~s~-~~--d~~i~iwd~~~~-~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~-------- 189 (279)
....+.+.+ ++. +|+.. .. +.+|.+|+++.. ..........+ .-....++++.|+|+++++...
T Consensus 113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~ 192 (355)
T 3sre_A 113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK 192 (355)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHH
T ss_pred eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccc
Confidence 556666655 454 34333 33 467888877643 11111111111 2235789999999998877651
Q ss_pred ---------CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec-CCCeEEEEECCC
Q 023642 190 ---------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEA 258 (279)
Q Consensus 190 ---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s-~d~~i~vwd~~~ 258 (279)
.+.+.-+|. ++...+.. .-...+.++|+||+++|+.+. ..+.|+.|++..
T Consensus 193 ~~e~~~~~~~g~vyr~d~--~~~~~~~~-----------------~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 193 SWEMHLGLAWSFVTYYSP--NDVRVVAE-----------------GFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp HHHHHTTCCCEEEEEECT--TCCEEEEE-----------------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cchhhccCCccEEEEEEC--CeEEEeec-----------------CCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 133444443 32221111 012578999999998776554 577999999863
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=93.35 E-value=2.2 Score=35.48 Aligned_cols=78 Identities=18% Similarity=0.120 Sum_probs=50.1
Q ss_pred eeCCCCCeEEEEECCCCCEEEEE-eCCCcEEEEEcCC-CeEEeeeeeccCCCcceEEEEECC-CCCEEEEEeCC-CeEEE
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAG-FQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMS-PIVHI 195 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~-~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d-~~i~i 195 (279)
+...-..-+.++||||++.|..+ +..++|..|++.. +..... ..+ ...+..-.+++.+ +|++.+++..+ +.|..
T Consensus 216 ~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~-~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~ 293 (355)
T 3sre_A 216 VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPL-RVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFF 293 (355)
T ss_dssp EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE-EEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHS
T ss_pred eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecC-EEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEE
Confidence 33334567889999999887665 4578999999864 322211 112 2245678899999 59988777644 34444
Q ss_pred EECC
Q 023642 196 VDVG 199 (279)
Q Consensus 196 ~d~~ 199 (279)
|+..
T Consensus 294 ~~P~ 297 (355)
T 3sre_A 294 YDAE 297 (355)
T ss_dssp CCTT
T ss_pred ECCC
Confidence 4443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=93.32 E-value=2.7 Score=34.03 Aligned_cols=103 Identities=10% Similarity=0.025 Sum_probs=60.5
Q ss_pred EEECCCCCEEEEEeCC--------------CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe----CCC
Q 023642 130 SQFSADGSLFVAGFQA--------------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----MSP 191 (279)
Q Consensus 130 ~~~spd~~~l~s~~~d--------------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----~d~ 191 (279)
--+++++.+|+-.... ..|+..+++.++... +... ....|+|++..|+... ...
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~----l~~~----~~~~~s~~g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV----LDPD----PCIYASLIGNYIYYLHYDTQTAT 129 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE----EECS----CEEEEEEETTEEEEEEESSSSCE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE----eecC----CccEEEEeCCEEEEEeecCCCCc
Confidence 4568899988766543 467888888764221 1121 1236788999988776 344
Q ss_pred eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CCeEEEEECCCCeE
Q 023642 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKL 261 (279)
Q Consensus 192 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~~i~vwd~~~~~~ 261 (279)
.|...++.+.....+... .+ ..|+|+++.|+..+. ...|++.++..+..
T Consensus 130 ~Iy~~~~dGs~~~~lt~~-------------------~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~ 179 (302)
T 3s25_A 130 SLYRIRIDGEEKKKIKNH-------------------YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSE 179 (302)
T ss_dssp EEEEEETTSCCCEEEESS-------------------CC--CCSEEETTEEEEECTTTCCEEEEETTTTEE
T ss_pred eEEEEECCCCCeEEEeCC-------------------Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCE
Confidence 677777765544333221 11 334566666664443 45677777765543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=4.5 Score=36.48 Aligned_cols=125 Identities=9% Similarity=-0.025 Sum_probs=79.3
Q ss_pred CCCCCeEEEEECCCCCEEEEEe--CCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEEC
Q 023642 122 QTTSRAYVSQFSADGSLFVAGF--QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDV 198 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~ 198 (279)
........++++|...+|..+. ..++|...+++..... .+ .. .-.....+++++++..|+.+. ..+.|..+|+
T Consensus 120 ~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l--~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 120 KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TL--VP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EE--EC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EE--EC-CCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 4445678999999655555444 3568888888755322 11 12 233578999999877766655 5678999999
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCC
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h 268 (279)
.+.....+. .. ......+++.. +..+++-...+.|...|..+|+....+...
T Consensus 196 dG~~~~v~~------------~~-----l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~ 247 (628)
T 4a0p_A 196 LGLNREVIA------------DD-----LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGH 247 (628)
T ss_dssp TSCSCEEEE------------EC-----CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECS
T ss_pred CCCceEEee------------cc-----CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecC
Confidence 765442111 10 11456777764 445555556789999998888766666543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=93.03 E-value=3.1 Score=33.90 Aligned_cols=111 Identities=15% Similarity=0.128 Sum_probs=62.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
...+..+.+.+++..++.+ .++.|.. ..+.|+...... ......+..+++.|++.+++.+...+..+-.|-.....
T Consensus 121 ~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~--~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW 196 (327)
T 2xbg_A 121 PGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALV--QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAW 196 (327)
T ss_dssp SSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEE--CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSC
T ss_pred CCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEee--cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCce
Confidence 3557888887777666655 4554422 333443332221 23445789999999998887765444333333211111
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
..... .....+..+.+.++++.++. +.++.+++.+
T Consensus 197 ~~~~~----------------~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~ 231 (327)
T 2xbg_A 197 EPHNR----------------TTSRRLHNMGFTPDGRLWMI-VNGGKIAFSD 231 (327)
T ss_dssp EEEEC----------------CSSSCEEEEEECTTSCEEEE-ETTTEEEEEE
T ss_pred eECCC----------------CCCCccceeEECCCCCEEEE-eCCceEEEec
Confidence 11110 01236788888888876654 4467676664
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=92.20 E-value=0.64 Score=42.16 Aligned_cols=77 Identities=14% Similarity=0.242 Sum_probs=52.1
Q ss_pred EEEEECC-CCCEEEEEeCCC-----------eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC
Q 023642 173 TDTSLSP-DQRHLVYASMSP-----------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240 (279)
Q Consensus 173 ~~~~~sp-~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 240 (279)
..+++.| +++.++.|+.+. .+.+||..+++...+...... +.....++++.++++
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~-------------~~~~~~~~~~~~~g~ 255 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK-------------HDMFCPGISMDGNGQ 255 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS-------------CCCSSCEEEECTTSC
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCC-------------CCCccccccCCCCCC
Confidence 3567777 888888887543 588999998876433221110 111334567789999
Q ss_pred EEEEecC-CCeEEEEECCCCeEE
Q 023642 241 ELVAGSS-DDCIYVYDLEANKLS 262 (279)
Q Consensus 241 ~l~t~s~-d~~i~vwd~~~~~~~ 262 (279)
+++.|+. +..+.+||..+++..
T Consensus 256 lyv~GG~~~~~v~~yd~~t~~W~ 278 (656)
T 1k3i_A 256 IVVTGGNDAKKTSLYDSSSDSWI 278 (656)
T ss_dssp EEEECSSSTTCEEEEEGGGTEEE
T ss_pred EEEeCCCCCCceEEecCcCCcee
Confidence 9999984 458999999877644
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=92.11 E-value=6.5 Score=35.37 Aligned_cols=118 Identities=8% Similarity=0.020 Sum_probs=74.9
Q ss_pred CCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC--CCeEEEEECC
Q 023642 123 TTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM--SPIVHIVDVG 199 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~~i~i~d~~ 199 (279)
-......+++++.+..| ++-...+.|.+.+++..... .. ....-....++++.|.+.+|+.... .+.|...++.
T Consensus 82 ~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~-~l--~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d 158 (619)
T 3s94_A 82 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-VL--FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD 158 (619)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE--ECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE-EE--EeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC
Confidence 33678899999965555 55566789999999865321 11 1122334788999998766666553 3567777776
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe-cCCCeEEEEECCCC
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEAN 259 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~-s~d~~i~vwd~~~~ 259 (279)
+.....+... .-.....+++++++..|+.+ ...+.|...|+...
T Consensus 159 G~~~~~l~~~----------------~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 159 GSSRFIIINS----------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp SCSCEEEECS----------------SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred CCceEEEEeC----------------CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence 5443322211 11267889999876665544 45668888888653
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=91.73 E-value=7.2 Score=35.14 Aligned_cols=114 Identities=10% Similarity=0.022 Sum_probs=72.9
Q ss_pred CCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC--CCeEEEEECCCC
Q 023642 125 SRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM--SPIVHIVDVGSG 201 (279)
Q Consensus 125 ~~V~~~~~spd~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~~i~i~d~~~~ 201 (279)
.....+++.+.+..| ++-...+.|.+.+++..... . . ....-....++++.|....|+.... .+.|...++.+.
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~-~-l-~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~ 156 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ-V-L-VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS 156 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE-E-E-ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE-E-E-EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC
Confidence 456789998765555 55556788999998765321 1 1 1122235789999997666666553 467888888765
Q ss_pred ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe-cCCCeEEEEECCC
Q 023642 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEA 258 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~-s~d~~i~vwd~~~ 258 (279)
....+... -.....+++++++..|+.+ ...+.|..+|+..
T Consensus 157 ~~~~l~~~-----------------~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 157 ERTTLVPN-----------------VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp SCEEEECS-----------------CSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ceEEEECC-----------------CCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence 54333211 1267788888876666554 3466788888764
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=91.69 E-value=0.93 Score=40.14 Aligned_cols=97 Identities=12% Similarity=0.195 Sum_probs=59.6
Q ss_pred ceEEEEECCCCCEEEEEe-CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC
Q 023642 171 TVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (279)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~ 249 (279)
....+.++|||++++.++ .+.++.++|++.-....-.+........ ...-. ---.....+|.++|.-..|.--|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~--~ae~e--~GlGPlHt~Fd~~G~aYTtlfidS 399 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVI--VGEPE--LGLGPLHTTFDGRGNAYTTLFIDS 399 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGE--EECCB--CCSCEEEEEECSSSEEEEEETTTT
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccce--Eeecc--CCCcccEEEECCCCceEeeeeecc
Confidence 456789999999987665 6889999999742210000000000000 00000 001457789999995555666899
Q ss_pred eEEEEECCCC----------eEEEEEeCCCcc
Q 023642 250 CIYVYDLEAN----------KLSLRILAHTVN 271 (279)
Q Consensus 250 ~i~vwd~~~~----------~~~~~~~~h~~~ 271 (279)
.|.-|++... ..+.++.-|-++
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp 431 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP 431 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccCC
Confidence 9999999753 577888776554
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=91.46 E-value=7.7 Score=34.90 Aligned_cols=118 Identities=8% Similarity=-0.062 Sum_probs=67.5
Q ss_pred CCCCCeEEEEECCCCCEEEEE-eCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEE-EeCCCeEEEEECC
Q 023642 122 QTTSRAYVSQFSADGSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVG 199 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~i~i~d~~ 199 (279)
........++|++.+..|+-+ ...++|..++++........ ....-.....+++.+.+..|+. -...+.|.+.++.
T Consensus 37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v--~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d 114 (619)
T 3s94_A 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV--VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD 114 (619)
T ss_dssp BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEE--ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEE--EeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECC
Confidence 344567899999966666544 45678999998755211111 1222235889999996665554 4567899999998
Q ss_pred CCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC--CCeEEEEECC
Q 023642 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLE 257 (279)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~--d~~i~vwd~~ 257 (279)
+.....+... .-.....+++.|.+.+|+.... ...|...++.
T Consensus 115 G~~~~~l~~~----------------~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d 158 (619)
T 3s94_A 115 GSLRKVLFWQ----------------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD 158 (619)
T ss_dssp SCSCEEEECS----------------SCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCCEEEEEeC----------------CCCCCceEEEecCCCeEEEeccCCCCEEEEEECC
Confidence 7654333210 0013456777776444443332 3456655654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=91.02 E-value=4.1 Score=33.69 Aligned_cols=63 Identities=8% Similarity=-0.037 Sum_probs=37.4
Q ss_pred CCCeEEEEECCC---CCEEEEEeC----C----CcEEEEEcCCC--eE-----Eeeeee-ccCCCcceEEEEECCCCCEE
Q 023642 124 TSRAYVSQFSAD---GSLFVAGFQ----A----SQIRIYDVERG--WK-----IQKDIL-AKSLRWTVTDTSLSPDQRHL 184 (279)
Q Consensus 124 ~~~V~~~~~spd---~~~l~s~~~----d----~~i~iwd~~~~--~~-----~~~~~~-~~~~~~~v~~~~~sp~~~~l 184 (279)
......++|+|+ +..|..+.. + ..|..|+.... .. +..... ...| ....++|.|||.++
T Consensus 72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~pDG~Ly 149 (354)
T 3a9g_A 72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGPDGMLY 149 (354)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECTTSCEE
T ss_pred CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECCCCcEE
Confidence 456899999997 555544332 3 57888887654 11 111011 1123 34679999999876
Q ss_pred EEEe
Q 023642 185 VYAS 188 (279)
Q Consensus 185 ~~~~ 188 (279)
++.+
T Consensus 150 vt~G 153 (354)
T 3a9g_A 150 ITTG 153 (354)
T ss_dssp EECC
T ss_pred EEEC
Confidence 6643
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=90.90 E-value=1 Score=34.81 Aligned_cols=110 Identities=12% Similarity=0.045 Sum_probs=58.5
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeE--E--eeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccc
Q 023642 135 DGSLFVAGFQASQIRIYDVERGWK--I--QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVT 210 (279)
Q Consensus 135 d~~~l~s~~~d~~i~iwd~~~~~~--~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 210 (279)
.+..|....+| +++.=...++.. . ........--..+..++|+|+|.+.+. .++.++-.+..++.........
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 34556666666 555444443320 0 010111111236889999999997766 6677777666553332111110
Q ss_pred cccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 211 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
.-.+.. +... -..+.|.|+|.+.++ .|+.|+-++-.+
T Consensus 80 ------t~IG~~--Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 80 ------KKIGNG--GWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp ------EEEECS--CGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ------cEeccc--cccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 000000 0111 257889999988777 568888887643
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.27 E-value=4.9 Score=31.89 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=60.9
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-----CeEEEEECCCCcee
Q 023642 135 DGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTME 204 (279)
Q Consensus 135 d~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~i~d~~~~~~~ 204 (279)
++..++.|+.+ ..+.+||+.+...... ............+.+ +++.++.|+.+ ..+.+||+.+.+..
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV-TPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeC-CCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 66777777654 4688999988743322 111111111222222 56666777653 46899999988765
Q ss_pred eeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC-----CeEEEEECCCCeE
Q 023642 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKL 261 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d-----~~i~vwd~~~~~~ 261 (279)
.+....... .....+. .++++++.|+.+ ..+.+||..+.+.
T Consensus 236 ~~~~~p~~r--------------~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 236 TVTSMTTPR--------------CYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp EECCCSSCC--------------BSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred ECCCCCCcc--------------cceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 443221110 0111222 267777777754 4689999987653
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=89.54 E-value=2.6 Score=34.15 Aligned_cols=67 Identities=15% Similarity=0.059 Sum_probs=42.5
Q ss_pred EECCCCCEEEEEe--C--CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC-CCeEEEEECCCCceee
Q 023642 131 QFSADGSLFVAGF--Q--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMES 205 (279)
Q Consensus 131 ~~spd~~~l~s~~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~i~d~~~~~~~~ 205 (279)
.|+|++++|+-.. . ...|...+++.... .+ +..+. + .+|+|+++.|+..+. ...|...++.++....
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~---lt~~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~ 181 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KK---IKNHY--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEAL 181 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EE---EESSC--C--CCSEEETTEEEEECTTTCCEEEEETTTTEEEE
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EE---EeCCC--c--eEeeEECCEEEEEeCCCceEEEEECCCCCEEE
Confidence 6788999888765 3 34555666664322 22 12222 2 457889998887665 6788888887766543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.12 E-value=4.9 Score=31.99 Aligned_cols=109 Identities=15% Similarity=0.137 Sum_probs=60.6
Q ss_pred CCCEEEEEeCC-------CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-----CeEEEEECCCCc
Q 023642 135 DGSLFVAGFQA-------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGT 202 (279)
Q Consensus 135 d~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~i~d~~~~~ 202 (279)
++..++.|+.+ ..+.+||+.+....... ...........+.+ +++.++.|+.+ ..+.+||..+.+
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA-EMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC-CCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC-CCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 56666776542 35889999877433221 11111111222222 56677777654 468999998877
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC-----eEEEEECCCCeEE
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEANKLS 262 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~-----~i~vwd~~~~~~~ 262 (279)
...+....... . ....+. .++++++.|+.++ .+.+||..+.+..
T Consensus 232 W~~~~~~~~~r------------~--~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 232 WRQVADMNMCR------------R--NAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp EEEECCCSSCC------------B--SCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred EeeCCCCCCcc------------c--cCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 65443221110 0 111122 3677777877543 5999999887654
|
| >3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A | Back alignment and structure |
|---|
Probab=88.79 E-value=3.8 Score=37.41 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=30.8
Q ss_pred cEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 229 ~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
.|.++.+ +..++++-+.|.++|+||+++++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555544 478999999999999999999999988764
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.32 E-value=8.3 Score=30.65 Aligned_cols=109 Identities=13% Similarity=0.153 Sum_probs=60.9
Q ss_pred CCCEEEEEeCC----CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC------CeEEEEECCCCcee
Q 023642 135 DGSLFVAGFQA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIVHIVDVGSGTME 204 (279)
Q Consensus 135 d~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------~~i~i~d~~~~~~~ 204 (279)
++..++.|+.+ ..+.+||+.+...... ............+.+ +++.++.|+.+ ..+.+||..+....
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~ 131 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSK-LGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWH 131 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEE-ECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEEC-CCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence 66677777755 6788999988743322 111111112222223 66677777654 46899999987764
Q ss_pred eeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC---------CCeEEEEECCCCeEE
Q 023642 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---------DDCIYVYDLEANKLS 262 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~---------d~~i~vwd~~~~~~~ 262 (279)
.......... ....+. .++++++.|+. -..+.+||..+.+..
T Consensus 132 ~~~~~p~~r~--------------~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~ 182 (306)
T 3ii7_A 132 TKPSMLTQRC--------------SHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT 182 (306)
T ss_dssp EECCCSSCCB--------------SCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE
T ss_pred eCCCCcCCcc--------------eeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE
Confidence 4332211100 111122 26667777653 345889999887543
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=88.03 E-value=15 Score=35.02 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=32.1
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeec
Q 023642 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN 208 (279)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 208 (279)
.+.+++..++..++++-+.|+++|+|++.++++.....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46777788888999999999999999999998865443
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=87.77 E-value=20 Score=34.95 Aligned_cols=112 Identities=12% Similarity=0.123 Sum_probs=65.5
Q ss_pred CCCCCEEEEEeC-C--------CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 133 SADGSLFVAGFQ-A--------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 133 spd~~~l~s~~~-d--------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
..+...|+++.- + ..|++.+......+... .......|...+... .+++.++ ++.+.++.+..++.
T Consensus 470 ~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w--~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L 544 (1158)
T 3ei3_A 470 VDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEW--KEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQEL 544 (1158)
T ss_dssp CSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEE--CCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEE
T ss_pred cCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEE--ECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCce
Confidence 335556666542 1 24666666544333221 112223566666543 4666555 57788887766543
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEecC------CCEEEEecC-CCeEEEEECCCCeEEEE
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD------GRELVAGSS-DDCIYVYDLEANKLSLR 264 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~------g~~l~t~s~-d~~i~vwd~~~~~~~~~ 264 (279)
...... . -...|.|+++.|. +++++.|.. |++|+|+++.+.+.+..
T Consensus 545 ~~~~~~-------~--------l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~ 597 (1158)
T 3ei3_A 545 RQISHT-------E--------MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHK 597 (1158)
T ss_dssp EEEEEE-------E--------CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred eeeccc-------C--------CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEE
Confidence 222111 1 1127999998763 468999996 99999999998666544
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=87.49 E-value=9.6 Score=30.40 Aligned_cols=109 Identities=19% Similarity=0.138 Sum_probs=61.3
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-----CeEEEEECCCCcee
Q 023642 135 DGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTME 204 (279)
Q Consensus 135 d~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~i~d~~~~~~~ 204 (279)
++.+++.|+.+ ..+.+||+.+...... ............+.+ +++.++.|+.+ ..+.+||+.+.+..
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI-TAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC-CCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 56777777654 4688999987743322 111111111222333 56677777654 56999999987765
Q ss_pred eeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC-----CeEEEEECCCCeEE
Q 023642 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLS 262 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d-----~~i~vwd~~~~~~~ 262 (279)
.+....... .....+. -++++++.|+.+ ..+.+||..+.+..
T Consensus 245 ~~~~~p~~r--------------~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 245 FVAPMKHRR--------------SALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp ECCCCSSCC--------------BSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred ECCCCCCCc--------------cceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 433221110 0111122 267777777743 46899999887644
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=87.01 E-value=1.4 Score=41.99 Aligned_cols=39 Identities=31% Similarity=0.178 Sum_probs=34.9
Q ss_pred ccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 228 ~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
..+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 467788888899999999999999999999999998865
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=86.75 E-value=0.59 Score=41.32 Aligned_cols=70 Identities=13% Similarity=0.063 Sum_probs=48.8
Q ss_pred EEEEECCCCCEEEEEe-CCCcEEEEEcCCC------e------EEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEE
Q 023642 128 YVSQFSADGSLFVAGF-QASQIRIYDVERG------W------KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (279)
Q Consensus 128 ~~~~~spd~~~l~s~~-~d~~i~iwd~~~~------~------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 194 (279)
-.+.++|||++++.++ -+.++.++|+..- + .+.. .....-.....+|.++|.-..+.-.|..|.
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a---e~e~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG---EPELGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE---CCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe---eccCCCcccEEEECCCCceEeeeeecceEE
Confidence 3468999999987665 4779999998741 1 0111 111223567889999995555666899999
Q ss_pred EEECCC
Q 023642 195 IVDVGS 200 (279)
Q Consensus 195 i~d~~~ 200 (279)
.|++..
T Consensus 403 kWni~~ 408 (638)
T 3sbq_A 403 KWNMEE 408 (638)
T ss_dssp EEEHHH
T ss_pred EEeccH
Confidence 999864
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.89 E-value=11 Score=29.70 Aligned_cols=109 Identities=12% Similarity=0.087 Sum_probs=60.7
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-----CeEEEEECCCCcee
Q 023642 135 DGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTME 204 (279)
Q Consensus 135 d~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~i~d~~~~~~~ 204 (279)
++..++.|+.+ ..+.+||+.+.+..... ...........+.+ +++.++.|+.+ ..+.+||+.+....
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 188 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLG-DMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWT 188 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE-ECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECC-CCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEE
Confidence 56777777654 36889998877433221 11111111222222 66677776644 45889999887765
Q ss_pred eeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC-----CeEEEEECCCCeEE
Q 023642 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLS 262 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d-----~~i~vwd~~~~~~~ 262 (279)
.+....... .....+. .++++++.|+.+ ..+.+||+.+.+..
T Consensus 189 ~~~~~p~~r--------------~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 189 NVTPMATKR--------------SGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp EECCCSSCC--------------BSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred eCCCCCccc--------------ccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 443221110 0111222 256777777753 46899999887644
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=85.80 E-value=9.1 Score=30.54 Aligned_cols=109 Identities=16% Similarity=0.150 Sum_probs=60.1
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-----CeEEEEECCCCcee
Q 023642 135 DGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTME 204 (279)
Q Consensus 135 d~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~i~d~~~~~~~ 204 (279)
++..++.|+.+ ..+.+||+.+.+..... ...........+.+ +++.++.|+.+ ..+.+||+.+.+..
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 197 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-PMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWR 197 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECC-CCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECC-CCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEe
Confidence 66777777643 46889999877433221 11111111222233 56666676643 45889999887764
Q ss_pred eeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC-----CeEEEEECCCCeEE
Q 023642 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLS 262 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d-----~~i~vwd~~~~~~~ 262 (279)
.+...... . .....+.+ ++++++.|+.+ ..+.+||+.+.+..
T Consensus 198 ~~~~~p~~----------r----~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 198 MITAMNTI----------R----SGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp ECCCCSSC----------C----BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred eCCCCCCc----------c----ccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 43321110 0 01122222 67777777654 46999999876543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.78 E-value=12 Score=29.88 Aligned_cols=112 Identities=14% Similarity=0.139 Sum_probs=61.7
Q ss_pred CCCEEEEEeC-C-----CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCC-----eEEEEECCCCce
Q 023642 135 DGSLFVAGFQ-A-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVGSGTM 203 (279)
Q Consensus 135 d~~~l~s~~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-----~i~i~d~~~~~~ 203 (279)
+++.++.|+. + ..+.+||+.+...... ............+.+ +++.++.|+.++ .+.+||+.+.+.
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKEL-APMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeEEEC-CCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence 5667777776 2 4689999987743221 111111111222222 667777776543 588899988776
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC--------------CeEEEEECCCCeEEEEE
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------------DCIYVYDLEANKLSLRI 265 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d--------------~~i~vwd~~~~~~~~~~ 265 (279)
..+....... .....+. -++++++.|+.+ ..+.+||+.+.+-....
T Consensus 225 ~~~~~~p~~r--------------~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 284 (315)
T 4asc_A 225 APFEAFPQER--------------SSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL 284 (315)
T ss_dssp EEECCCSSCC--------------BSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEE
T ss_pred EECCCCCCcc--------------cceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhc
Confidence 5443221110 0111222 256777777653 24889999987755443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=85.74 E-value=5.9 Score=32.69 Aligned_cols=75 Identities=11% Similarity=0.154 Sum_probs=45.5
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC---CCEEEEec-
Q 023642 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGS- 246 (279)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~t~s- 246 (279)
..+.++|.|+|+++++ ..++.|++++ .+....+.... . +.. .......++|+|+ +..|+.+.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~-v-----~~~-----g~~~p~gia~~pdf~~~g~lYv~~~ 97 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELS-V-----YHR-----GESGLLGLALHPRFPQEPYVYAYRT 97 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECC-C-----CCS-----TTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecce-E-----eec-----CCCCceeEEECCCCCCCCEEEEEEe
Confidence 4678999999995554 5669999998 44432221111 0 000 1126789999998 55544433
Q ss_pred CC-----CeEEEEECCCC
Q 023642 247 SD-----DCIYVYDLEAN 259 (279)
Q Consensus 247 ~d-----~~i~vwd~~~~ 259 (279)
.. ..|..|+...+
T Consensus 98 ~~~~~~~~~v~r~~~~~~ 115 (352)
T 2ism_A 98 VAEGGLRNQVVRLRHLGE 115 (352)
T ss_dssp ECTTSSEEEEEEEEECSS
T ss_pred cCCCCCccEEEEEEeCCC
Confidence 22 57888887643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=85.58 E-value=11 Score=37.44 Aligned_cols=154 Identities=13% Similarity=0.111 Sum_probs=85.6
Q ss_pred cccceEeeeeecCCCC-ceeeCC----CCCeEEEEECCCCCEEEEEe-------CCCcEEEEEcCCCeEEeeeeeccCCC
Q 023642 102 ADCCHMLSRYLPVNGP-WPVDQT----TSRAYVSQFSADGSLFVAGF-------QASQIRIYDVERGWKIQKDILAKSLR 169 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~~-~~l~~h----~~~V~~~~~spd~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~ 169 (279)
.+..+..|++.....| ..+..| ...|-.-..+++.++++..| -.|.+.+|..+.+... ...+|.
T Consensus 123 T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ----~iegha 198 (1630)
T 1xi4_A 123 TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ----PIEGHA 198 (1630)
T ss_pred cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch----hhhHhH
Confidence 4566777877643333 345555 45677778889999886433 3478889998876321 234554
Q ss_pred cceEEEEEC--CCCC-EEEEEeC---CCeEEEEECCCC-ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEE
Q 023642 170 WTVTDTSLS--PDQR-HLVYASM---SPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (279)
Q Consensus 170 ~~v~~~~~s--p~~~-~l~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 242 (279)
+....+.+. +... .++.+.. .+.++|.++... ... .........+.|.+... .- -..++..++.-..+
T Consensus 199 ~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~--~~f~kk~~~~~~~~~~~--~D-fpv~~~vs~k~g~i 273 (1630)
T 1xi4_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN--QPFPKKAVDVFFPPEAQ--ND-FPVAMQISEKHDVV 273 (1630)
T ss_pred hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCC--CCCccccccccCCcccc--cC-cceEEEeccccCEE
Confidence 444333332 2222 3332222 268899888543 110 01111111122222211 11 23466777776677
Q ss_pred EEecCCCeEEEEECCCCeEEEE
Q 023642 243 VAGSSDDCIYVYDLEANKLSLR 264 (279)
Q Consensus 243 ~t~s~d~~i~vwd~~~~~~~~~ 264 (279)
..-+.-|.|+++|+.||.++..
T Consensus 274 y~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 274 FLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred EEEecCceEEEEecccchhhhh
Confidence 7778889999999999887644
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=85.47 E-value=14 Score=30.46 Aligned_cols=78 Identities=18% Similarity=0.142 Sum_probs=46.9
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC----CCEEEEe-
Q 023642 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----GRELVAG- 245 (279)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----g~~l~t~- 245 (279)
..+.++|.|||+++++--..|.|++++..++....+...... +.. .......++|+|+ +.+.++-
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v-----~~~-----g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGV-----SPS-----GEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC-----CCB-----TTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCce-----eec-----CCCCceeeEeccccccCCEEEEEEe
Confidence 478999999999877766589999998766654322211100 000 1236789999995 4333332
Q ss_pred -cCCCeEEEEECCC
Q 023642 246 -SSDDCIYVYDLEA 258 (279)
Q Consensus 246 -s~d~~i~vwd~~~ 258 (279)
..+..|.-|.+..
T Consensus 103 ~~~~~~v~R~~~~~ 116 (347)
T 3das_A 103 SASDNRIVRMLYDE 116 (347)
T ss_dssp CSSSEEEEEEEBCT
T ss_pred cCCCCEEEEEEeCC
Confidence 2344566665543
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=84.71 E-value=18 Score=31.08 Aligned_cols=161 Identities=12% Similarity=0.073 Sum_probs=93.3
Q ss_pred cccceEeeeeecCCCC-ceeeCC----CCCeEEEEECCCCCEEEEEe-------CCCcEEEEEcCCCeEEeeeeeccCCC
Q 023642 102 ADCCHMLSRYLPVNGP-WPVDQT----TSRAYVSQFSADGSLFVAGF-------QASQIRIYDVERGWKIQKDILAKSLR 169 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~~-~~l~~h----~~~V~~~~~spd~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~ 169 (279)
.+..+..|.+.....+ ..+..| ...|..-..+++.++++..+ -.|.+.+|..+.+... ...+|.
T Consensus 123 T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ----~ieGha 198 (494)
T 1bpo_A 123 TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ----PIEGHA 198 (494)
T ss_dssp CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE----EECCSE
T ss_pred cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc----hheeee
Confidence 3556667776543333 345555 45677778899999886433 2367889999887432 245775
Q ss_pred cceEEEEECCC--C-CEEEEEeCC---CeEEEEECCCC-ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEE
Q 023642 170 WTVTDTSLSPD--Q-RHLVYASMS---PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (279)
Q Consensus 170 ~~v~~~~~sp~--~-~~l~~~~~d---~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 242 (279)
+....+.+.-+ . ..++.+... +.++|.++... ... .........+.|.++. -..-..++..++.-..+
T Consensus 199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~--~~f~kk~vdv~fppe~---~~DFPvamqvs~kygvi 273 (494)
T 1bpo_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN--QPFPKKAVDVFFPPEA---QNDFPVAMQISEKHDVV 273 (494)
T ss_dssp EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC--CCCCCEEEECCCCTTS---TTCCEEEEEEETTTTEE
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC--CCccceeeeeeCCccc---ccCceeEEEecccCCEE
Confidence 54433333211 1 234444432 78999998543 000 0010001111222221 11134577888887788
Q ss_pred EEecCCCeEEEEECCCCeEEEEEeCCCcc
Q 023642 243 VAGSSDDCIYVYDLEANKLSLRILAHTVN 271 (279)
Q Consensus 243 ~t~s~d~~i~vwd~~~~~~~~~~~~h~~~ 271 (279)
..-+.-|.|++||+.++.++..-+--...
T Consensus 274 yviTK~G~i~lyDleTgt~i~~nrIs~~~ 302 (494)
T 1bpo_A 274 FLITKYGYIHLYDLETGTCIYMNRISGET 302 (494)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred EEEecCceEEEEecccceeeeeecccCCc
Confidence 88888999999999999988766543333
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=84.15 E-value=19 Score=30.85 Aligned_cols=66 Identities=14% Similarity=0.053 Sum_probs=36.6
Q ss_pred CCCeEEEEECCC---CCEEEEE-eC------------CCcEEEEEcCCC--eE--Eeeeee-c-cCCCcceEEEEECCCC
Q 023642 124 TSRAYVSQFSAD---GSLFVAG-FQ------------ASQIRIYDVERG--WK--IQKDIL-A-KSLRWTVTDTSLSPDQ 181 (279)
Q Consensus 124 ~~~V~~~~~spd---~~~l~s~-~~------------d~~i~iwd~~~~--~~--~~~~~~-~-~~~~~~v~~~~~sp~~ 181 (279)
...+..++|+|| +.+|..+ +. ...|.-|+...+ .. ...+.. . .........++|.|||
T Consensus 76 ~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG 155 (454)
T 1cru_A 76 QNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ 155 (454)
T ss_dssp SCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS
T ss_pred CCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC
Confidence 466789999995 5555433 32 235666665432 11 111111 1 1111247899999999
Q ss_pred CEEEEEeC
Q 023642 182 RHLVYASM 189 (279)
Q Consensus 182 ~~l~~~~~ 189 (279)
.++++.+.
T Consensus 156 ~Lyv~~Gd 163 (454)
T 1cru_A 156 KIYYTIGD 163 (454)
T ss_dssp CEEEEECC
T ss_pred eEEEEECC
Confidence 87776543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.19 E-value=15 Score=28.97 Aligned_cols=109 Identities=14% Similarity=0.127 Sum_probs=59.4
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC-------CCeEEEEECCCCc
Q 023642 135 DGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-------SPIVHIVDVGSGT 202 (279)
Q Consensus 135 d~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-------d~~i~i~d~~~~~ 202 (279)
++..++.|+.++ .+.+||+.+...... ............+.+ +++.++.|+. -..+.+||+.+..
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV-APMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE-CCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeec-CCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 567777777553 578899887743322 111111111222222 5666666653 2358899998877
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC-----CeEEEEECCCCeEE
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLS 262 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d-----~~i~vwd~~~~~~~ 262 (279)
...+....... .....+. .++++++.|+.+ ..+.+||..+.+..
T Consensus 185 W~~~~~~p~~r--------------~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 185 WTYIAEMSTRR--------------SGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp EEEECCCSSCC--------------BSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred EEECCCCcccc--------------ccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence 65443221110 0111222 257777777754 36999999877543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=82.19 E-value=1.7 Score=42.31 Aligned_cols=38 Identities=32% Similarity=0.210 Sum_probs=33.2
Q ss_pred cEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 229 ~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
.+.+++..++..++++-+.|+++||||+.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566777888999999999999999999999998865
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.35 E-value=18 Score=28.58 Aligned_cols=108 Identities=12% Similarity=0.075 Sum_probs=59.6
Q ss_pred CCCEEEEEeC---------CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-----CeEEEEECCC
Q 023642 135 DGSLFVAGFQ---------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGS 200 (279)
Q Consensus 135 d~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~i~d~~~ 200 (279)
++.+++.|+. -..+.+||+.+....... ...........+.+ +++.++.|+.+ ..+.+||+.+
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~ 225 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC-PMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKL 225 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC-CCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTT
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC-CccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCC
Confidence 5666677653 345889999887432221 11111111222222 56666666543 4689999988
Q ss_pred CceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC-----CeEEEEECCCCeE
Q 023642 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKL 261 (279)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d-----~~i~vwd~~~~~~ 261 (279)
.+...+....... .....+.+ ++++++.|+.+ ..+.+||..+.+.
T Consensus 226 ~~W~~~~~~p~~r--------------~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 226 NEWKMVSPMPWKG--------------VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp TEEEECCCCSCCB--------------SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred CcEEECCCCCCCc--------------cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 7765443221110 01122222 67777787743 4799999988653
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=80.41 E-value=20 Score=28.54 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=61.9
Q ss_pred CCCCEEEEEeC------CCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-----CeEEEEECCCCc
Q 023642 134 ADGSLFVAGFQ------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGT 202 (279)
Q Consensus 134 pd~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~i~d~~~~~ 202 (279)
.++..++.|+. -..+.+||+.+....... ...........+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA-PMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC-CCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC-CCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 36677777764 236899999887432221 11111111222222 56677776643 357789998877
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC--------------CeEEEEECCCCeEEEEEe
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------------DCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d--------------~~i~vwd~~~~~~~~~~~ 266 (279)
...+....... .....+ ..++++++.|+.+ ..+.+||+.+.+-...++
T Consensus 234 W~~~~~~p~~r--------------~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 295 (318)
T 2woz_A 234 WEVMTEFPQER--------------SSISLV--SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLK 295 (318)
T ss_dssp EEECCCCSSCC--------------BSCEEE--EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEEES
T ss_pred EEECCCCCCcc--------------cceEEE--EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhhcc
Confidence 65433221110 011112 2356777777643 468999999887655543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 279 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.002 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.004 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.002 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.002 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.001 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.001 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.004 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.002 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.4 bits (124), Expect = 1e-08
Identities = 31/177 (17%), Positives = 51/177 (28%), Gaps = 21/177 (11%)
Query: 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD 162
D L T + D LFV+G + +++DV G Q
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT- 221
Query: 163 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222
+ P+ S + D+ + + I G
Sbjct: 222 --FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG------- 272
Query: 223 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWITCI 279
I S+ FS GR L+AG D V+D + + H ++C+
Sbjct: 273 -------ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD----NRVSCL 318
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.4 bits (124), Expect = 2e-08
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 17/125 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F +G+ F G + R++D+ ++ + +T S S R L+
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG-ITSVSFSKSGRLLLAGYDD 291
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
++ D A V HD + L + DG + GS D
Sbjct: 292 FNCNVWDALKAD---RAGVLAGHDN-------------RVSCLGVTDDGMAVATGSWDSF 335
Query: 251 IYVYD 255
+ +++
Sbjct: 336 LKIWN 340
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.5 bits (124), Expect = 2e-08
Identities = 22/159 (13%), Positives = 58/159 (36%), Gaps = 8/159 (5%)
Query: 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK----DILAKSLRWTVT 173
+ V+ DG AG +R++D E G+ +++ + + +V
Sbjct: 199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 258
Query: 174 DTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSL 233
+ D + +V S+ V + ++ + +S + + S+
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF----VLSV 314
Query: 234 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272
+ + +++GS D + +D ++ L + H ++
Sbjct: 315 ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV 353
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.2 bits (118), Expect = 1e-07
Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 19/136 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---------TVTDTSLSPDQ 181
F+ DG V+G +++++++ S V + + +
Sbjct: 261 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 320
Query: 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241
+++ S V D SG + + H S A +
Sbjct: 321 EYILSGSKDRGVLFWDKKSGN---PLLMLQGHRNSVISVA-------VANGSSLGPEYNV 370
Query: 242 LVAGSSDDCIYVYDLE 257
GS D ++ +
Sbjct: 371 FATGSGDCKARIWKYK 386
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.2 bits (113), Expect = 3e-07
Identities = 17/141 (12%), Positives = 41/141 (29%), Gaps = 19/141 (13%)
Query: 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD 174
+ + + + G ++G + I+++DV G + V
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT---LVGHDNWVRG 252
Query: 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK 234
+ ++ + + + D + H+ + SL
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKR---CMKTLNAHEH-------------FVTSLD 296
Query: 235 FSTDGRELVAGSSDDCIYVYD 255
F +V GS D + V++
Sbjct: 297 FHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.0 bits (110), Expect = 1e-06
Identities = 18/170 (10%), Positives = 53/170 (31%), Gaps = 5/170 (2%)
Query: 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD 162
D + + + + DG+L + +R++ V +
Sbjct: 122 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181
Query: 163 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD---VGSGTMESLANVTEIHDGLDFS 219
+ + ++ S + SG+ + + ++ G+
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241
Query: 220 AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269
G+ + + F + G+ +++ + D + V+D + + + AH
Sbjct: 242 TLV--GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 289
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.7 bits (91), Expect = 2e-04
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272
G+ + + F +V+ S D I V+D E + HT ++
Sbjct: 15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV 62
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.9 bits (112), Expect = 6e-07
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 14/84 (16%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF 231
++ + + D+ + + VHI + + + E H+G +
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNG-------------QVT 55
Query: 232 SLKFSTDGRELVAGSSDDCIYVYD 255
+ ++ D +V +D YV+
Sbjct: 56 GVDWAPDSNRIVTCGTDRNAYVWT 79
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.8 bits (96), Expect = 5e-05
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
++ D + ++ IY+ +Q L + VT +PD +V
Sbjct: 15 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ-VTGVDWAPDSNRIVTCGTDR 73
Query: 192 IVHIVD 197
++
Sbjct: 74 NAYVWT 79
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 36.8 bits (83), Expect = 0.002
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL 263
I ++ D ++ ++ +++Y+ NK
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ 43
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (109), Expect = 1e-06
Identities = 22/142 (15%), Positives = 52/142 (36%), Gaps = 17/142 (11%)
Query: 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181
T ++ S ++ V+G S ++I+D++ G +Q + VT + +
Sbjct: 213 LTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN- 271
Query: 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241
++ +S V + D+ +G + + GG ++ ++ S
Sbjct: 272 -FVITSSDDGTVKLWDLKTGEFIR-----------NLVTLESGGSGGVVWRIRASNTKLV 319
Query: 242 LVAGSSDDC----IYVYDLEAN 259
GS + + V D + +
Sbjct: 320 CAVGSRNGTEETKLLVLDFDVD 341
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 43.7 bits (101), Expect = 1e-05
Identities = 23/169 (13%), Positives = 48/169 (28%), Gaps = 26/169 (15%)
Query: 94 SGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ-----ASQI 148
S R + D + + V+ P+ + ++ AG +
Sbjct: 197 SYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRS 256
Query: 149 RIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN 208
+V+ G L S+ + + A ++ DV + + + N
Sbjct: 257 SPINVDPGDYRMIIPLESSILI-YSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN 315
Query: 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
+ L+ S D + ++ D IY + LE
Sbjct: 316 --------------------NLTDLRLSADRKTVMVRKDDGKIYTFPLE 344
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.1 bits (89), Expect = 4e-04
Identities = 11/106 (10%), Positives = 30/106 (28%), Gaps = 7/106 (6%)
Query: 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI 163
+ P++ + V + + + + YDV+
Sbjct: 256 SSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR------- 308
Query: 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209
++ +TD LS D++ ++ ++ + E
Sbjct: 309 KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVET 354
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (97), Expect = 4e-05
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 17/88 (19%)
Query: 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF 228
V + + V +++ G + S
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-----------------KESS 307
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDL 256
+ S S D + +V GS D VY++
Sbjct: 308 SVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 8e-05
Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 4/107 (3%)
Query: 92 NYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIY 151
+G + ++ ++ + + S +F+ G FV+ + + + +
Sbjct: 233 CPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
Query: 152 DVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198
G I + + S V +S D +++V S + +V
Sbjct: 293 RTPYGASIFQSKESSS----VLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.6 bits (80), Expect = 0.004
Identities = 24/128 (18%), Positives = 40/128 (31%), Gaps = 15/128 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
AY +ADG + F + + R + I + V ++S RH+
Sbjct: 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ---INTLNHGEVVCAVTISNPTRHVYT 68
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
V + D+ +S S D I S K DG L+ G
Sbjct: 69 GGKG-CVKVWDISHPGNKSP-----------VSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116
Query: 247 SDDCIYVY 254
+ ++
Sbjct: 117 EASTLSIW 124
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.3 bits (95), Expect = 7e-05
Identities = 17/138 (12%), Positives = 37/138 (26%), Gaps = 8/138 (5%)
Query: 118 WPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176
+ V + G + ++ + D+ G + + L+ +
Sbjct: 27 ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFG 86
Query: 177 L--SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK 234
SPD + L + + ++D S I L
Sbjct: 87 AALSPDGKTLAIYESPVRLELTHFEVQP-----TRVALYDAETLSRRKAFEAPRQITMLA 141
Query: 235 FSTDGRELVAGSSDDCIY 252
++ DG +L D +
Sbjct: 142 WARDGSKLYGLGRDLHVM 159
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 36.7 bits (83), Expect = 0.002
Identities = 8/90 (8%), Positives = 25/90 (27%), Gaps = 15/90 (16%)
Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240
+ +++ + + ++D ++ + + + GR
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITI--------------ADAGPTPMVPMVAPGGR 46
Query: 241 EL-VAGSSDDCIYVYDLEANKLSLRILAHT 269
+ + + DL + RI T
Sbjct: 47 IAYATVNKSESLVKIDLVTGETLGRIDLST 76
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 36.7 bits (83), Expect = 0.002
Identities = 17/166 (10%), Positives = 38/166 (22%), Gaps = 14/166 (8%)
Query: 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVS----QFSADGSLFVAGFQASQIRIYDVERGWK 158
D M + P+ + Y D++
Sbjct: 155 DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP 214
Query: 159 IQKDILAKSLRW---TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215
++ + + +++P +E D
Sbjct: 215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLE-------SFDL 267
Query: 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261
++ +S+ STDG + G + + YD E +
Sbjct: 268 EKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 1e-04
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268
I +K L+ S D + VY + ++ +L
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS 52
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.9 bits (86), Expect = 0.001
Identities = 5/66 (7%), Positives = 18/66 (27%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+ SL + + +Y + K + + + + + + +Y
Sbjct: 18 KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV 77
Query: 191 PIVHIV 196
+
Sbjct: 78 QGEILK 83
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 38.6 bits (88), Expect = 5e-04
Identities = 16/232 (6%), Positives = 46/232 (19%), Gaps = 19/232 (8%)
Query: 47 LSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCH 106
+S E+ +H+ + P + R +
Sbjct: 96 ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD 155
Query: 107 MLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK--DIL 164
+ Y + + + +
Sbjct: 156 G--SLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI 213
Query: 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224
A+ + +L + H + T + D +
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR 273
Query: 225 GYSF---------------GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261
+ + + F G +L G + + + V++ + +
Sbjct: 274 LAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 325
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 37.4 bits (85), Expect = 0.001
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 16/87 (18%)
Query: 176 SLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF 235
+L +++ + +H+VDV S T + + D FG +
Sbjct: 3 ALKAGHEYMIVTNYPNNLHVVDVASDT---VYKSCVMPDK------------FGPGTAMM 47
Query: 236 STDGREL-VAGSSDDCIYVYDLEANKL 261
+ D R V + IY DL+ K
Sbjct: 48 APDNRTAYVLNNHYGDIYGIDLDTCKN 74
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 36.3 bits (82), Expect = 0.003
Identities = 15/150 (10%), Positives = 44/150 (29%), Gaps = 5/150 (3%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMS 190
A + + + + DV + K + ++PD R V +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASD-TVYKSCVMPDKFG-PGTAMMAPDNRTAYVLNNHY 61
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG--IFSLKFSTDGRELVAGSSD 248
++ +D+ + AN++ + + S G +++ T
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 249 DCIYVYDLEANKLSLRILAHTVNIALWITC 278
+ V+ + + + +++
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMR 151
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (86), Expect = 8e-04
Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 14/128 (10%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
++ L V+G + IR++D+E G ++ + L + D + +V
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR-----FDNKRIVSG 234
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
+ + + D+ + T L +S +F L+F D ++V+ S
Sbjct: 235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLV-------EHSGRVFRLQF--DEFQIVSSSH 285
Query: 248 DDCIYVYD 255
DD I ++D
Sbjct: 286 DDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.6 bits (80), Expect = 0.004
Identities = 11/51 (21%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALW 275
S G++ L++ D +++V+G D+ I ++D + + HT ++
Sbjct: 13 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 61
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 37.3 bits (84), Expect = 0.001
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWITCI 279
G++ I +L S DG+ L + ++ I +D+ + IT I
Sbjct: 10 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT---MITGI 61
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.8 bits (83), Expect = 0.002
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 19/105 (18%)
Query: 161 KDILAKS---LRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGL 216
K+I+ R T S P + Y S V +D G + + T
Sbjct: 6 KEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT------ 59
Query: 217 DFSAADDGGYSFGIFSLKFS--TDGRELVAGSSDDCIYVYDLEAN 259
G S + ++KFS + L +G + V+ +
Sbjct: 60 -------GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 279 | |||
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.93 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.93 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.93 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.93 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.92 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.9 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.9 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.9 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.89 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.89 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.89 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.88 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.87 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.87 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.86 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.85 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.84 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.84 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.82 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.81 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.81 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.8 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.78 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.77 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.77 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.76 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.76 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.75 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.7 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.69 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.68 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.64 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.6 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.59 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.58 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.58 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.56 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.46 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.41 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.37 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.35 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.25 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.19 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.16 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.15 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.15 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.13 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.08 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.03 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.68 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.56 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.54 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.39 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.34 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.23 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.13 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.05 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.01 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.99 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.96 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.93 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.9 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.84 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.82 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.76 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.72 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.72 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.71 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.7 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.45 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.33 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.2 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.37 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.12 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.86 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.46 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.45 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.18 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 95.03 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 94.88 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 94.4 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.99 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 93.45 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.86 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 90.51 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 89.86 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 89.38 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 89.34 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 89.13 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 89.01 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 87.7 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 87.13 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 86.37 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 85.88 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 84.78 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 83.98 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=1.2e-24 Score=179.67 Aligned_cols=182 Identities=16% Similarity=0.188 Sum_probs=147.1
Q ss_pred ccchhhhhccccCc-----cCCCCee---eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 023642 79 PVSTVKMLAGREGN-----YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRI 150 (279)
Q Consensus 79 ~~~~~~~~~~~~~~-----~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~i 150 (279)
.....+.|.||... +++++.+ ++.|+.+.+|++........+..|...|.+++|+|++.++++|+.|+.+++
T Consensus 44 ~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~ 123 (340)
T d1tbga_ 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred ceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeec
Confidence 33445667788763 6777765 467889999998777767778999999999999999999999987777777
Q ss_pred EEcCC---------------------------------------------------------------------------
Q 023642 151 YDVER--------------------------------------------------------------------------- 155 (279)
Q Consensus 151 wd~~~--------------------------------------------------------------------------- 155 (279)
|+...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (340)
T d1tbga_ 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp EESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEee
Confidence 76433
Q ss_pred ------------CeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC
Q 023642 156 ------------GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (279)
Q Consensus 156 ------------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (279)
++++. .+.+|...|.+++|+|++++|++++.|+.|++||+............
T Consensus 204 ~d~~v~i~d~~~~~~~~---~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~------------- 267 (340)
T d1tbga_ 204 CDASAKLWDVREGMCRQ---TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD------------- 267 (340)
T ss_dssp TTTEEEEEETTTTEEEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-------------
T ss_pred cCceEEEEECCCCcEEE---EEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccc-------------
Confidence 22111 12367888999999999999999999999999999987764332211
Q ss_pred CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 224 ~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
.+...|.+++|+|++++|++|+.|+.|++||+.+++++.++.+|...|+++..
T Consensus 268 -~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~ 320 (340)
T d1tbga_ 268 -NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320 (340)
T ss_dssp -TCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred -cccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 14457999999999999999999999999999999999999999999999865
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=2.5e-25 Score=189.44 Aligned_cols=171 Identities=15% Similarity=0.163 Sum_probs=131.7
Q ss_pred eccccceEeeeeecCCCC------------------ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEee
Q 023642 100 SAADCCHMLSRYLPVNGP------------------WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK 161 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~------------------~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~ 161 (279)
.+.|+.+.+|++...... .....+...+++++|+|++ +|++|+.|++|++||+.+++++..
T Consensus 142 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~ 220 (393)
T d1sq9a_ 142 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYN 220 (393)
T ss_dssp EETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEE
T ss_pred EcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccc
Confidence 456888899987543211 1123556778999999997 899999999999999999876654
Q ss_pred ee---eccCCCcceEEEEECCCCCEEEEEeCCC---eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEE
Q 023642 162 DI---LAKSLRWTVTDTSLSPDQRHLVYASMSP---IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF 235 (279)
Q Consensus 162 ~~---~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 235 (279)
.. .+.+|..+|.+++|+|||++|++++.|+ .|++||+.+++............ .......+|...|++++|
T Consensus 221 ~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~---~~~~~~~gH~~~V~~l~f 297 (393)
T d1sq9a_ 221 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS---QASLGEFAHSSWVMSLSF 297 (393)
T ss_dssp EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----------CCBSBSSCEEEEEE
T ss_pred cccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccc---cceeeeecccCceeeecc
Confidence 32 2457889999999999999999999887 49999999988754432211110 111111358889999999
Q ss_pred ecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeE
Q 023642 236 STDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIAL 274 (279)
Q Consensus 236 sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (279)
+|++++|++++.|++|++||++++++++++.+|.+.|+.
T Consensus 298 spd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~ 336 (393)
T d1sq9a_ 298 NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI 336 (393)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSS
T ss_pred CCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccC
Confidence 999999999999999999999999999999999988864
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.93 E-value=6.8e-24 Score=175.13 Aligned_cols=167 Identities=12% Similarity=0.133 Sum_probs=135.6
Q ss_pred ccCCCCee---ec--cccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCE-EEEEeCCCcEEEEEcCCCeEEeeeeec
Q 023642 92 NYSGRGRF---SA--ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILA 165 (279)
Q Consensus 92 ~~~~~~~~---~~--~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~ 165 (279)
.+++++.+ .+ .+....+|++........+.+|.+.|++++|+|++++ |++|+.|+.|++||+++++.... .
T Consensus 109 ~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~---~ 185 (311)
T d1nr0a1 109 SWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST---F 185 (311)
T ss_dssp EECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE---E
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccccccccc---c
Confidence 35666654 12 2334667777666666778999999999999999885 78899999999999998876554 4
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe
Q 023642 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~ 245 (279)
..|..+|.++.|+|++++|++++.|+.+++||..++........... ...+|...|++++|+|++++|++|
T Consensus 186 ~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---------~~~~h~~~V~~~~~s~~~~~l~tg 256 (311)
T d1nr0a1 186 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL---------KNVAHSGSVFGLTWSPDGTKIASA 256 (311)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS---------SSCSSSSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccccCcccccccccccccccccccccccccccccccccc---------ccccccccccccccCCCCCEEEEE
Confidence 68888999999999999999999999999999998876443221111 112477899999999999999999
Q ss_pred cCCCeEEEEECCCCeEEEEEeCCCc
Q 023642 246 SSDDCIYVYDLEANKLSLRILAHTV 270 (279)
Q Consensus 246 s~d~~i~vwd~~~~~~~~~~~~h~~ 270 (279)
+.|++|+|||++++++++++..|..
T Consensus 257 s~Dg~v~iwd~~t~~~~~~l~~~~~ 281 (311)
T d1nr0a1 257 SADKTIKIWNVATLKVEKTIPVGTR 281 (311)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSS
T ss_pred eCCCeEEEEECCCCcEEEEEECCCC
Confidence 9999999999999999999987754
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.93 E-value=6e-24 Score=175.45 Aligned_cols=168 Identities=15% Similarity=0.144 Sum_probs=139.6
Q ss_pred cCCCCee--eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCc
Q 023642 93 YSGRGRF--SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW 170 (279)
Q Consensus 93 ~~~~~~~--~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 170 (279)
++++|.. ...+..+.+|++........+.+|.+.|++++|+|+|++|++|+.|++|++||+..+..... ..+..|..
T Consensus 25 ~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~-~~~~~~~~ 103 (311)
T d1nr0a1 25 NTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK-TTIPVFSG 103 (311)
T ss_dssp ECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE-EEEECSSS
T ss_pred EcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccc-cccccccC
Confidence 3444432 34566788899887777788999999999999999999999999999999999988754332 22467888
Q ss_pred ceEEEEECCCCCEEEEEeC--CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCE-EEEecC
Q 023642 171 TVTDTSLSPDQRHLVYASM--SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-LVAGSS 247 (279)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~t~s~ 247 (279)
+|.+++|+|++++|++++. +..+++|+..+++..... .+|...|.+++|+|++++ |++|+.
T Consensus 104 ~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l----------------~~h~~~v~~v~~~~~~~~~l~sgs~ 167 (311)
T d1nr0a1 104 PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL----------------TGQARAMNSVDFKPSRPFRIISGSD 167 (311)
T ss_dssp CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC----------------CCCSSCEEEEEECSSSSCEEEEEET
T ss_pred ccccccccccccccccccccccccccccccccccccccc----------------cccccccccccccccceeeeccccc
Confidence 9999999999999999886 456999999987753321 126668999999999885 788999
Q ss_pred CCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 248 DDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 248 d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
|+.|++||+++++....+.+|...|+++..
T Consensus 168 d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~ 197 (311)
T d1nr0a1 168 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 197 (311)
T ss_dssp TSCEEEEETTTBEEEEEECCCSSCEEEEEE
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999999999999998875
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=8.6e-24 Score=178.44 Aligned_cols=185 Identities=8% Similarity=0.053 Sum_probs=142.5
Q ss_pred ccCCCCee---eccccceEeeeeecCC--CCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeecc
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK 166 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 166 (279)
.+++++.+ .+.++.+.+|+..... ....+.+|.++|++++|+|++++|++|+.|++|++||+.++..... ....
T Consensus 14 ~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~-~~~~ 92 (371)
T d1k8kc_ 14 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT-LVIL 92 (371)
T ss_dssp EECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE-EECC
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccc-cccc
Confidence 35566654 4567788899886543 3345789999999999999999999999999999999988754433 3356
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeee-ccccc----cceeEEeeCCC------------------
Q 023642 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA-NVTEI----HDGLDFSAADD------------------ 223 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~----~~~~~~~~~~~------------------ 223 (279)
.|...|.+++|+|++++|++++.|+.+++|++......... ..... ...+.|.+++.
T Consensus 93 ~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~ 172 (371)
T d1k8kc_ 93 RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI 172 (371)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred cccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeecc
Confidence 78889999999999999999999999999987664431111 11110 01111111110
Q ss_pred -------------------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 224 -------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 224 -------------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
.+|...|.+++|+|+|++|++++.|++|++||+.+++.+..+.+|..+|+++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~f 251 (371)
T d1k8kc_ 173 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF 251 (371)
T ss_dssp TTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEE
T ss_pred CccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeee
Confidence 347778999999999999999999999999999999999999999999998764
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=7.2e-22 Score=166.41 Aligned_cols=183 Identities=16% Similarity=0.191 Sum_probs=138.8
Q ss_pred ccCCCCee--eccccceEeeeeecCCCCc------------------eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 023642 92 NYSGRGRF--SAADCCHMLSRYLPVNGPW------------------PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIY 151 (279)
Q Consensus 92 ~~~~~~~~--~~~d~~~~~~~~~~~~~~~------------------~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iw 151 (279)
.++++|.+ .+.|+.+.+|++....... ...+|...|++++|+|++++|++|+.|+.|++|
T Consensus 69 ~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~ 148 (388)
T d1erja_ 69 KFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW 148 (388)
T ss_dssp EECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccccccc
Confidence 46788776 4568899999875433211 134678889999999999999999999999999
Q ss_pred EcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecccccc------------------
Q 023642 152 DVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH------------------ 213 (279)
Q Consensus 152 d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------------------ 213 (279)
|...++.+.. ..+|...|.+++|++++..+++++.++.+++||..+.............
T Consensus 149 ~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (388)
T d1erja_ 149 DIENRKIVMI---LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL 225 (388)
T ss_dssp ETTTTEEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET
T ss_pred cccccccccc---cccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcC
Confidence 9999876654 4678889999999999999999999999999988765442211110000
Q ss_pred --------------------------------ceeEEeeCCC-------------------------------------C
Q 023642 214 --------------------------------DGLDFSAADD-------------------------------------G 224 (279)
Q Consensus 214 --------------------------------~~~~~~~~~~-------------------------------------~ 224 (279)
..+.|.+++. .
T Consensus 226 d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 305 (388)
T d1erja_ 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305 (388)
T ss_dssp TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEE
T ss_pred CCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecc
Confidence 0011111111 2
Q ss_pred CccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 225 ~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
.|...|.+++|+|++++|++|+.|+.|++||+++++++.++++|.+.|.++..
T Consensus 306 ~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~ 358 (388)
T d1erja_ 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 358 (388)
T ss_dssp CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred cccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEE
Confidence 25667899999999999999999999999999999999999999999988754
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.90 E-value=1.2e-22 Score=167.56 Aligned_cols=139 Identities=17% Similarity=0.174 Sum_probs=119.3
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
...++.+.+|++........+.+|.+.|++++|+|++++|++|+.|+.|++||+......... ....+...|.+++|+|
T Consensus 202 ~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~-~~~~~~~~i~~~~~s~ 280 (340)
T d1tbga_ 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSK 280 (340)
T ss_dssp EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCTTCCSCEEEEEECS
T ss_pred eecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccc-ccccccCceEEEEECC
Confidence 445778888887666656678899999999999999999999999999999999988765543 2456667899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEE
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd 255 (279)
++++|++++.|+.|++||+.+++...... +|...|++++|+|++++|++|+.|++|+|||
T Consensus 281 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~----------------~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 281 SGRLLLAGYDDFNCNVWDALKADRAGVLA----------------GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEEC----------------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEECCCEEEEEECCCCcEEEEEc----------------CCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 99999999999999999999988654321 2667999999999999999999999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=1.1e-21 Score=159.49 Aligned_cols=153 Identities=13% Similarity=0.179 Sum_probs=115.2
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~ 201 (279)
+|...+.++.|+|+++.+++++.|+.+++||+.++..... +..|...+.+++|+|++.+|++++.|+.+++|+..++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~ 175 (317)
T d1vyhc1 99 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT---FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 175 (317)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE---EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred cccccceeeeccCCCceEEeeccCcceeEeecccceeeeE---EccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccc
Confidence 3344444444455555677788888999999998876554 4578888999999999999999999999999999887
Q ss_pred ceeeeecc-ccccceeEEe----------------------------eCCC-----------------CCccccEEEEEE
Q 023642 202 TMESLANV-TEIHDGLDFS----------------------------AADD-----------------GGYSFGIFSLKF 235 (279)
Q Consensus 202 ~~~~~~~~-~~~~~~~~~~----------------------------~~~~-----------------~~~~~~v~~~~~ 235 (279)
........ ......+.+. +..+ .+|...|.+++|
T Consensus 176 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~ 255 (317)
T d1vyhc1 176 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 255 (317)
T ss_dssp CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEE
Confidence 75432211 0000000010 0000 347789999999
Q ss_pred ecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 236 STDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 236 sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
+|++++|++++.|+.|++||+.+++++.++.+|...|+++..
T Consensus 256 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~ 297 (317)
T d1vyhc1 256 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 297 (317)
T ss_dssp CSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEE
T ss_pred CCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 999999999999999999999999999999999999998864
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=4.2e-21 Score=159.51 Aligned_cols=182 Identities=12% Similarity=0.098 Sum_probs=146.1
Q ss_pred ccCCCCee---eccccceEeeeeecCCCC--ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeecc
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGP--WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK 166 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~--~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 166 (279)
.+++++.+ .+.|+.+.+|++...... ..+..|...+.+++|+|++.++++++.|+.|++||+.+++.... ..
T Consensus 104 ~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~---~~ 180 (337)
T d1gxra_ 104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ---FQ 180 (337)
T ss_dssp EECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---EC
T ss_pred EEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cc
Confidence 46777764 457888999987654432 34688999999999999999999999999999999999876554 45
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC-----------------------
Q 023642 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD----------------------- 223 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 223 (279)
.|...|.+++|+|++..+++++.|+.+++||+++++.............+.|.+.+.
T Consensus 181 ~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 260 (337)
T d1gxra_ 181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260 (337)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE
T ss_pred ccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceecccccccccccccccccc
Confidence 788899999999999999999999999999999988654443333222222322222
Q ss_pred -CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 224 -GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 224 -~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
..|...|.+++|+|++++|++++.|+.|++||+.+++++..+. |...|.++..
T Consensus 261 ~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~ 314 (337)
T d1gxra_ 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDI 314 (337)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEE
T ss_pred ccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEE
Confidence 4578899999999999999999999999999999999998876 7788888754
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.89 E-value=6.2e-22 Score=166.91 Aligned_cols=154 Identities=12% Similarity=0.085 Sum_probs=122.2
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
+.++|+|++|+||+++||+|+.|+.|+|||+.+++... ...+.+|.++|.+++|+|++++|++++.|++|++||+.++.
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~-~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~ 84 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ-VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 84 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEE-EEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEE-EEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc
Confidence 34789999999999999999999999999998875432 23467899999999999999999999999999999998776
Q ss_pred eeeeecc---ccccceeEEeeCCC-----------------------------CCccccEEEEEEecCCCEEEEecCCCe
Q 023642 203 MESLANV---TEIHDGLDFSAADD-----------------------------GGYSFGIFSLKFSTDGRELVAGSSDDC 250 (279)
Q Consensus 203 ~~~~~~~---~~~~~~~~~~~~~~-----------------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~ 250 (279)
....... ......+.|.+++. ..|...|.+++|+|++++|++|+.|++
T Consensus 85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~ 164 (371)
T d1k8kc_ 85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164 (371)
T ss_dssp EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence 5433222 11122233333322 457889999999999999999999999
Q ss_pred EEEEECCC------------------CeEEEEEeCCCcceeEEEe
Q 023642 251 IYVYDLEA------------------NKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 251 i~vwd~~~------------------~~~~~~~~~h~~~v~~v~~ 277 (279)
|++||+.. +..+....+|...|.++..
T Consensus 165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 209 (371)
T d1k8kc_ 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF 209 (371)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE
T ss_pred EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEe
Confidence 99999754 3467777889888888754
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=4.3e-21 Score=159.45 Aligned_cols=168 Identities=18% Similarity=0.165 Sum_probs=136.7
Q ss_pred ccCCCCee--eccccceEeeeeecCCCCce-----eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeee
Q 023642 92 NYSGRGRF--SAADCCHMLSRYLPVNGPWP-----VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL 164 (279)
Q Consensus 92 ~~~~~~~~--~~~d~~~~~~~~~~~~~~~~-----l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 164 (279)
.+++++++ .+.|+.+.+|++........ ..+|.+.|.+++|+||+++|++|+.|+.|++||+........ ..
T Consensus 58 ~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~-~~ 136 (337)
T d1gxra_ 58 TISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK-AE 136 (337)
T ss_dssp EECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE-EE
T ss_pred EECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccc-cc
Confidence 46777775 45588899998866443322 357999999999999999999999999999999876533222 23
Q ss_pred ccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEE
Q 023642 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (279)
Q Consensus 165 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t 244 (279)
...|...+..++|+|++.++++++.|+.+++||+.+++...... +|...|.+++|++++..+++
T Consensus 137 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~----------------~~~~~v~~l~~s~~~~~~~~ 200 (337)
T d1gxra_ 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ----------------GHTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC----------------CCSSCEEEEEECTTSSEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc----------------cccccccccccccccccccc
Confidence 46788889999999999999999999999999999887643221 25668999999999999999
Q ss_pred ecCCCeEEEEECCCCeEEEEEeCCCcceeEEEe
Q 023642 245 GSSDDCIYVYDLEANKLSLRILAHTVNIALWIT 277 (279)
Q Consensus 245 ~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~ 277 (279)
++.|+.|++||+++++.+..+. |...|.++..
T Consensus 201 ~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~ 232 (337)
T d1gxra_ 201 GGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGY 232 (337)
T ss_dssp EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEE
T ss_pred ccccccccccccccceeecccc-cccceEEEEE
Confidence 9999999999999999888775 7788887754
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=5.1e-22 Score=162.91 Aligned_cols=85 Identities=7% Similarity=0.005 Sum_probs=71.4
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCC-CEEEEEeCCCeEEEEE
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVD 197 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d 197 (279)
++.+|.+.|++++|+|++++|++|+.|++|+|||+..+..........+|..+|.+++|+|++ .+|++|+.|+.|++|+
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~ 85 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence 467899999999999999999999999999999998764433333345789999999999975 5789999999999999
Q ss_pred CCCCce
Q 023642 198 VGSGTM 203 (279)
Q Consensus 198 ~~~~~~ 203 (279)
......
T Consensus 86 ~~~~~~ 91 (342)
T d1yfqa_ 86 LIGSPS 91 (342)
T ss_dssp SSSSSS
T ss_pred cccccc
Confidence 875443
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=2.8e-21 Score=160.01 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=123.6
Q ss_pred ccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCE-EEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC-
Q 023642 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD- 180 (279)
Q Consensus 103 d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~- 180 (279)
+....+|.+........+.+|...|.+++|+|++.+ +++++.|+.|++||....+..........|...|.+++|+|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~ 217 (325)
T d1pgua1 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS 217 (325)
T ss_dssp SCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT
T ss_pred cceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeecccc
Confidence 455666666555545567899999999999998875 678999999999999988766665556678889999999996
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCe
Q 023642 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (279)
Q Consensus 181 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~ 260 (279)
+.+|++++.|+.|++||+++++....... +.. .+...++++.| |+|++|++++.|++|+|||+++++
T Consensus 218 ~~~l~s~~~d~~i~iwd~~~~~~~~~l~~-----------~~~-~v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~ 284 (325)
T d1pgua1 218 GEFVITVGSDRKISCFDGKSGEFLKYIED-----------DQE-PVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSK 284 (325)
T ss_dssp CCEEEEEETTCCEEEEETTTCCEEEECCB-----------TTB-CCCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTTE
T ss_pred ceeccccccccceeeeeeccccccccccc-----------ccc-ccccceeeeec-cCCCEEEEEeCCCeEEEEECCCCC
Confidence 68899999999999999999886443221 100 12234455554 689999999999999999999999
Q ss_pred EEEEEeCCCccee
Q 023642 261 LSLRILAHTVNIA 273 (279)
Q Consensus 261 ~~~~~~~h~~~v~ 273 (279)
++..+..|...+.
T Consensus 285 ~~~~~~~~~~~~~ 297 (325)
T d1pgua1 285 CVQKWTLDKQQLG 297 (325)
T ss_dssp EEEEEECCTTCGG
T ss_pred EEEEEEecCCccc
Confidence 9999987776543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=1.5e-20 Score=152.59 Aligned_cols=142 Identities=16% Similarity=0.180 Sum_probs=126.3
Q ss_pred CceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 023642 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (279)
Q Consensus 117 ~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~ 196 (279)
...|.||.+.|++++|+|++++|++|+.|++|+|||+.+++.+.. +..|...|.+++|+|++.+++++..++.+.+|
T Consensus 10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~---~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~ 86 (317)
T d1vyhc1 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT---LKGHTDSVQDISFDHSGKLLASCSADMTIKLW 86 (317)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE---ECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEE---EeCCCCcEEEEeeecccccccccccccccccc
Confidence 457999999999999999999999999999999999999876654 46889999999999999999999999999999
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
+........... +|...+.++.|+|++..+++++.|+.+++||+++++.+..+.+|...+.++.
T Consensus 87 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (317)
T d1vyhc1 87 DFQGFECIRTMH----------------GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 150 (317)
T ss_dssp ETTSSCEEECCC----------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred cccccccccccc----------------cccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeee
Confidence 998776543221 2556899999999999999999999999999999999999999999888775
Q ss_pred e
Q 023642 277 T 277 (279)
Q Consensus 277 ~ 277 (279)
.
T Consensus 151 ~ 151 (317)
T d1vyhc1 151 P 151 (317)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.86 E-value=7.8e-21 Score=154.70 Aligned_cols=151 Identities=15% Similarity=0.145 Sum_probs=118.3
Q ss_pred cCCCCee---eccccceEeeeeecCCCC-ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC
Q 023642 93 YSGRGRF---SAADCCHMLSRYLPVNGP-WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL 168 (279)
Q Consensus 93 ~~~~~~~---~~~d~~~~~~~~~~~~~~-~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 168 (279)
+++++.+ .+.++.+.+|++...... .....|...|++++|+|++++|++++.|+.|++||+.++...........|
T Consensus 144 ~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h 223 (299)
T d1nr0a2 144 LSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH 223 (299)
T ss_dssp ECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4555554 456888889987654432 235689999999999999999999999999999999887666555556778
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC
Q 023642 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (279)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d 248 (279)
...|++++|+|++++|++++.|+.|++||+.++.......... ++...+.++.| +++++|++++.|
T Consensus 224 ~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-------------~~~~~v~~~~~-~~~~~l~s~s~D 289 (299)
T d1nr0a2 224 TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGA-------------HAMSSVNSVIW-LNETTIVSAGQD 289 (299)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTS-------------STTSCEEEEEE-EETTEEEEEETT
T ss_pred ccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecC-------------CCCCcEEEEEE-CCCCEEEEEeCC
Confidence 8999999999999999999999999999999876533221111 13345666654 667899999999
Q ss_pred CeEEEEECC
Q 023642 249 DCIYVYDLE 257 (279)
Q Consensus 249 ~~i~vwd~~ 257 (279)
++|++||+.
T Consensus 290 ~~i~iWdl~ 298 (299)
T d1nr0a2 290 SNIKFWNVP 298 (299)
T ss_dssp SCEEEEECC
T ss_pred CEEEEEecc
Confidence 999999984
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.85 E-value=4.2e-20 Score=150.29 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=117.6
Q ss_pred ceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 023642 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (279)
Q Consensus 118 ~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 197 (279)
+++.||.+.|++++|+||+++|++|+.|++|++||+.+++..... ...|...|++++|+|++++ ++++.|+.+++|+
T Consensus 6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~--~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~ 82 (299)
T d1nr0a2 6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF--PDVHATMITGIKTTSKGDL-FTVSWDDHLKVVP 82 (299)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS--SCSCSSCEEEEEECTTSCE-EEEETTTEEEEEC
T ss_pred eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE--cCCCCCcEEEEEeecccee-ecccceeeEEEec
Confidence 468899999999999999999999999999999999998776542 3578889999999999975 5667899999999
Q ss_pred CCCCceeeeec----cccccceeEEeeCCC--------------------CCccccEEEEEEecCCCEEEEecCCCeEEE
Q 023642 198 VGSGTMESLAN----VTEIHDGLDFSAADD--------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYV 253 (279)
Q Consensus 198 ~~~~~~~~~~~----~~~~~~~~~~~~~~~--------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~v 253 (279)
........... .......+.+.+++. ......+.+++|+|++++|++++.|+.|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~ 162 (299)
T d1nr0a2 83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHV 162 (299)
T ss_dssp SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred cCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 86543211111 111111122222221 012346788999999999999999999999
Q ss_pred EECCCCeEEE-EEeCCCcceeEEEe
Q 023642 254 YDLEANKLSL-RILAHTVNIALWIT 277 (279)
Q Consensus 254 wd~~~~~~~~-~~~~h~~~v~~v~~ 277 (279)
||+++++... ....|...|+++..
T Consensus 163 ~d~~~~~~~~~~~~~~~~~i~~~~~ 187 (299)
T d1nr0a2 163 YKLSGASVSEVKTIVHPAEITSVAF 187 (299)
T ss_dssp EEEETTEEEEEEEEECSSCEEEEEE
T ss_pred ccccccccccccccccccccccccc
Confidence 9999887654 44578899988764
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=1e-19 Score=150.53 Aligned_cols=163 Identities=9% Similarity=-0.029 Sum_probs=132.5
Q ss_pred eccccceEeeeeecCCCCc--------eeeCCCCCeEEEEECCCCCEEEEEeC--CCcEEEEEcCCCeEEeeeeeccCCC
Q 023642 100 SAADCCHMLSRYLPVNGPW--------PVDQTTSRAYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLR 169 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~--------~l~~h~~~V~~~~~spd~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~ 169 (279)
++.|+.+.+|++....... .+..|.++|.+++|+|++++|++++. ++.+++|+.++++++.. +.+|.
T Consensus 83 gs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~ 159 (325)
T d1pgua1 83 GDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGE---VSGHS 159 (325)
T ss_dssp EETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEE---CCSCS
T ss_pred EeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccccee---eeecc
Confidence 4578899999987644332 24578899999999999999987754 67899999999877665 46889
Q ss_pred cceEEEEECCCCCE-EEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC-CCEEEEecC
Q 023642 170 WTVTDTSLSPDQRH-LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSS 247 (279)
Q Consensus 170 ~~v~~~~~sp~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~t~s~ 247 (279)
..|.+++|+|++.+ +++++.|+.+++||....+........ .+|...|.+++|+|+ +.+|++++.
T Consensus 160 ~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~-------------~~~~~~v~~v~~~pd~~~~l~s~~~ 226 (325)
T d1pgua1 160 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH-------------HKQGSFVRDVEFSPDSGEFVITVGS 226 (325)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS-------------SCTTCCEEEEEECSTTCCEEEEEET
T ss_pred cccccccccccccceEEEeecccccccccccccccceecccc-------------cCCCCccEEeeeccccceecccccc
Confidence 99999999999876 678999999999999877653322111 125668999999997 688999999
Q ss_pred CCeEEEEECCCCeEEEEEeCCCcceeEEEee
Q 023642 248 DDCIYVYDLEANKLSLRILAHTVNIALWITC 278 (279)
Q Consensus 248 d~~i~vwd~~~~~~~~~~~~h~~~v~~v~~~ 278 (279)
|+.|++||+++++++.++.+|..++.+++.+
T Consensus 227 d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s 257 (325)
T d1pgua1 227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257 (325)
T ss_dssp TCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred ccceeeeeeccccccccccccccccccceee
Confidence 9999999999999999999999988776654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=4.2e-19 Score=149.20 Aligned_cols=135 Identities=23% Similarity=0.366 Sum_probs=113.3
Q ss_pred eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee---------------eccCCCcceEEEEECCCCCEEE
Q 023642 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI---------------LAKSLRWTVTDTSLSPDQRHLV 185 (279)
Q Consensus 121 ~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------~~~~~~~~v~~~~~sp~~~~l~ 185 (279)
.+|.+.|++++|+|||++|++|+ |+.|+|||+.+++.+.... ....|...|.+++|+|++++|+
T Consensus 59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~ 137 (388)
T d1erja_ 59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137 (388)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence 46999999999999999999987 8999999999886654421 1235667799999999999999
Q ss_pred EEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEE
Q 023642 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI 265 (279)
Q Consensus 186 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~ 265 (279)
+++.|+.|++||...++...... +|...|.++.|++++..+++++.++.+++||.++.......
T Consensus 138 s~~~dg~v~i~~~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 201 (388)
T d1erja_ 138 TGAEDRLIRIWDIENRKIVMILQ----------------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 201 (388)
T ss_dssp EEETTSCEEEEETTTTEEEEEEC----------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ecccccccccccccccccccccc----------------cccccccccccccccccccccccceeeeeeecccccccccc
Confidence 99999999999999887644321 26679999999999999999999999999999999888877
Q ss_pred eCCCcce
Q 023642 266 LAHTVNI 272 (279)
Q Consensus 266 ~~h~~~v 272 (279)
..+...+
T Consensus 202 ~~~~~~~ 208 (388)
T d1erja_ 202 SIEDGVT 208 (388)
T ss_dssp ECSSCEE
T ss_pred ccccccc
Confidence 7665544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.3e-18 Score=142.68 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=117.8
Q ss_pred eeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC
Q 023642 110 RYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (279)
Q Consensus 110 ~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 189 (279)
+.-+.+...++.||.+.|.+ +++++|++|+||+.|++|+|||+.+++++.. +.+|...|.+++|+|+ +|++++.
T Consensus 2 ~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~---~~~h~~~V~~v~~~~~--~l~s~s~ 75 (342)
T d2ovrb2 2 RRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT---LVGHTGGVWSSQMRDN--IIISGST 75 (342)
T ss_dssp HHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEE---CCCCSSCEEEEEEETT--EEEEEET
T ss_pred CCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEE---EeCCCCCEEEEEeCCC--cccccee
Confidence 33345566789999999865 4677899999999999999999999987664 5789999999999875 9999999
Q ss_pred CCeEEEEECCCCceeeeeccccccce-----------------e------------------------------EEeeCC
Q 023642 190 SPIVHIVDVGSGTMESLANVTEIHDG-----------------L------------------------------DFSAAD 222 (279)
Q Consensus 190 d~~i~i~d~~~~~~~~~~~~~~~~~~-----------------~------------------------------~~~~~~ 222 (279)
|+.+++|+.................. + ...+..
T Consensus 76 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (342)
T d2ovrb2 76 DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY 155 (342)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEET
T ss_pred cccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecC
Confidence 99999999876554322211110000 0 000000
Q ss_pred C-----------------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 223 D-----------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 223 ~-----------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
+ .+|...+ ..+++++.+|++++.|+.|++||++.++++..+.+|...|.++.
T Consensus 156 d~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~ 224 (342)
T d2ovrb2 156 DFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224 (342)
T ss_dssp TSCEEEEEGGGTEEEEEECCCSSCE--EEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE
T ss_pred CCeEEEeecccceeeEEEcCccccc--ccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEe
Confidence 0 2344444 34556788999999999999999999999999999999888764
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=7.9e-19 Score=148.74 Aligned_cols=164 Identities=20% Similarity=0.193 Sum_probs=118.0
Q ss_pred ccCCCCee--eccccceEeeeeecCC------CCceeeCCCCCeEEEEECCCCCEEEEEeCCCc---EEEEEcCCCeEEe
Q 023642 92 NYSGRGRF--SAADCCHMLSRYLPVN------GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQ---IRIYDVERGWKIQ 160 (279)
Q Consensus 92 ~~~~~~~~--~~~d~~~~~~~~~~~~------~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~---i~iwd~~~~~~~~ 160 (279)
.+++++.+ .+.|+.+.+|++.... ....+.+|..+|++++|+|||++|++|+.|++ |++||+.++..+.
T Consensus 191 ~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~ 270 (393)
T d1sq9a_ 191 DISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG 270 (393)
T ss_dssp EECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred EECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeee
Confidence 34566655 4678899999875432 23456789999999999999999999999874 8999999987665
Q ss_pred eee----------eccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecc-c----cccceeEEeeCCCCC
Q 023642 161 KDI----------LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV-T----EIHDGLDFSAADDGG 225 (279)
Q Consensus 161 ~~~----------~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~ 225 (279)
... ...+|...|++++|+||+++|++++.|++|++||+.++++...... . .......|.+++...
T Consensus 271 ~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~ 350 (393)
T d1sq9a_ 271 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL 350 (393)
T ss_dssp EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred eeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEE
Confidence 432 2247999999999999999999999999999999999987544321 1 011122344333322
Q ss_pred ccccEEEEEEecCC----------CEEEEecCCCeEEEEE
Q 023642 226 YSFGIFSLKFSTDG----------RELVAGSSDDCIYVYD 255 (279)
Q Consensus 226 ~~~~v~~~~~sp~g----------~~l~t~s~d~~i~vwd 255 (279)
....+.++.|.+.+ ..|++++.|+.|++|.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 351 AEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp SSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred EEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence 33457788877643 3577888888888886
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=5.7e-19 Score=142.75 Aligned_cols=134 Identities=14% Similarity=0.144 Sum_probs=106.1
Q ss_pred cceEeeeeecCCCCce-eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCC--
Q 023642 104 CCHMLSRYLPVNGPWP-VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-- 180 (279)
Q Consensus 104 ~~~~~~~~~~~~~~~~-l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-- 180 (279)
+.+.+|++........ ...|...+++++|+|++.+|++|+.|+.|++||+.++..... ....|...|.+++|+|+
T Consensus 141 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~--~~~~h~~~v~~~~~~p~~~ 218 (287)
T d1pgua2 141 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS--RWAFRTSKINAISWKPAEK 218 (287)
T ss_dssp SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC--CSCCCSSCEEEEEECCCC-
T ss_pred ceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccc--cccccccccceeeeccccc
Confidence 4566777654433333 345788999999999999999999999999999998865443 24678889999999875
Q ss_pred --------CCEEEEEeCCCeEEEEECCCCce-eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeE
Q 023642 181 --------QRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251 (279)
Q Consensus 181 --------~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i 251 (279)
+.+|++++.|+.|++||++++.. .... .+|...|++++|+|++ .|++++.|++|
T Consensus 219 ~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~----------------~~h~~~V~~v~~~~~~-~l~s~g~D~~v 281 (287)
T d1pgua2 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL----------------NAHKDGVNNLLWETPS-TLVSSGADACI 281 (287)
T ss_dssp -----CCSCCEEEEEETTSCEEEEESSCTTCCEEET----------------TSSTTCEEEEEEEETT-EEEEEETTSCE
T ss_pred ccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEe----------------CCCCCCeEEEEECCCC-EEEEEECCCeE
Confidence 46899999999999999977443 2111 1377799999999986 58899999999
Q ss_pred EEEEC
Q 023642 252 YVYDL 256 (279)
Q Consensus 252 ~vwd~ 256 (279)
++||+
T Consensus 282 ~iW~i 286 (287)
T d1pgua2 282 KRWNV 286 (287)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=2.5e-18 Score=141.54 Aligned_cols=175 Identities=15% Similarity=0.203 Sum_probs=131.6
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
++.|+.+.+|++...+....+.+|.+.|++++|+|+ .+|++|+.|+.|++|+........... ...+........++|
T Consensus 29 gs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 106 (355)
T d1nexb2 29 GADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEYK 106 (355)
T ss_dssp EETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEEC-CCSSCEEEEEEEEET
T ss_pred EeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccc-ccccccccccccccc
Confidence 467889999998776666778999999999999986 589999999999999999886655432 234444566778889
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccc------------------------------cceeEEeeCCC------
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEI------------------------------HDGLDFSAADD------ 223 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~------ 223 (279)
++.++++++.|+.|++||+.+............ .......+..+
T Consensus 107 ~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~ 186 (355)
T d1nexb2 107 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVW 186 (355)
T ss_dssp TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeee
Confidence 999999999999999999986543211100000 00000000000
Q ss_pred -----------CCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 224 -----------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 224 -----------~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
.++...+.++.|+|++.++++++.|++|++||++++.++..+.+|...|+++.
T Consensus 187 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~ 250 (355)
T d1nexb2 187 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR 250 (355)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEE
T ss_pred ecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccc
Confidence 34566788999999999999999999999999999999999999999998874
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=8.2e-18 Score=137.71 Aligned_cols=144 Identities=16% Similarity=0.177 Sum_probs=114.8
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
.+.|+.+.+|++........+.+|...|.++++++ ++|++|+.|+.|++||+...+..........|...+.++.++
T Consensus 193 ~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~- 269 (342)
T d2ovrb2 193 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN- 269 (342)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC-
T ss_pred EeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC-
Confidence 46788899998877666677889999999888865 699999999999999999887666554455676777777775
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCe----EEEEE
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC----IYVYD 255 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~----i~vwd 255 (279)
++++++++.||.|++||+++++....... ....+|...|++++|+|++.+|++|+.||+ |++||
T Consensus 270 -~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~-----------~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~D 337 (342)
T d2ovrb2 270 -KNFVITSSDDGTVKLWDLKTGEFIRNLVT-----------LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337 (342)
T ss_dssp -SSEEEEEETTSEEEEEETTTCCEEEEEEE-----------CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred -CCeeEEEcCCCEEEEEECCCCCEEEEEec-----------ccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEe
Confidence 56999999999999999999987432211 111236678999999999999999998885 99999
Q ss_pred CCC
Q 023642 256 LEA 258 (279)
Q Consensus 256 ~~~ 258 (279)
+..
T Consensus 338 f~~ 340 (342)
T d2ovrb2 338 FDV 340 (342)
T ss_dssp CCC
T ss_pred CCC
Confidence 863
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.77 E-value=5.5e-18 Score=140.46 Aligned_cols=161 Identities=15% Similarity=0.061 Sum_probs=120.4
Q ss_pred cCC-CCee--eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCC--cEEEEEcCCCeEEeeeeeccC
Q 023642 93 YSG-RGRF--SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKS 167 (279)
Q Consensus 93 ~~~-~~~~--~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~ 167 (279)
|+| +|++ ....+.+.+|+.... .....+|...|.+++|+|||++|++++.+. .|++||+.+++... ...
T Consensus 10 fSP~dG~~~a~~~~g~v~v~d~~~~--~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~----~~~ 83 (360)
T d1k32a3 10 FSPLDGDLIAFVSRGQAFIQDVSGT--YVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK----FEE 83 (360)
T ss_dssp EEECGGGCEEEEETTEEEEECTTSS--BEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE----CCC
T ss_pred ccCCCCCEEEEEECCeEEEEECCCC--cEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE----eeC
Confidence 565 5654 234556777765332 233347999999999999999998776553 79999999885543 467
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec-
Q 023642 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS- 246 (279)
Q Consensus 168 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s- 246 (279)
|...|.+++|+||+++|++++.++.+++|++.+++....... |...+.+++|+|||++|+.++
T Consensus 84 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~spdg~~la~~~~ 147 (360)
T d1k32a3 84 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS----------------REAMITDFTISDNSRFIAYGFP 147 (360)
T ss_dssp CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC----------------SSSCCCCEEECTTSCEEEEEEE
T ss_pred CCceEEeeeecccccccceeccccccccccccccceeeeeec----------------ccccccchhhccceeeeeeecc
Confidence 888999999999999999999999999999999887544322 444788899999999998543
Q ss_pred ---------CCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 247 ---------SDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 247 ---------~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
.++.+++||+.+++...... |...+..+.
T Consensus 148 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-~~~~~~~~~ 185 (360)
T d1k32a3 148 LKHGETDGYVMQAIHVYDMEGRKIFAATT-ENSHDYAPA 185 (360)
T ss_dssp ECSSTTCSCCEEEEEEEETTTTEEEECSC-SSSBEEEEE
T ss_pred ccccceeeccccceeeeccccCceeeecc-ccccccccc
Confidence 34579999999887654443 444444443
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.77 E-value=6.6e-18 Score=140.01 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=84.9
Q ss_pred cCccCCCCee---ecccc--ceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeee
Q 023642 90 EGNYSGRGRF---SAADC--CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL 164 (279)
Q Consensus 90 ~~~~~~~~~~---~~~d~--~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 164 (279)
...++++|++ .+.+. .+.+|+.. ......+..|...|.+++|+||+++|++++.++.+++|++.+++....
T Consensus 47 ~~~~spDg~~l~~~~~~~g~~v~v~d~~-~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~--- 122 (360)
T d1k32a3 47 YVRRGGDTKVAFIHGTREGDFLGIYDYR-TGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI--- 122 (360)
T ss_dssp EEEECSSSEEEEEEEETTEEEEEEEETT-TCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---
T ss_pred EEEECCCCCEEEEEEcCCCCEEEEEECC-CCcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeee---
Confidence 3457888865 23332 45556543 334456789999999999999999999999999999999999876544
Q ss_pred ccCCCcceEEEEECCCCCEEEEEe----------CCCeEEEEECCCCcee
Q 023642 165 AKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIVDVGSGTME 204 (279)
Q Consensus 165 ~~~~~~~v~~~~~sp~~~~l~~~~----------~d~~i~i~d~~~~~~~ 204 (279)
...|...+.+++|+|||++|+.+. .++.+++||+.+++..
T Consensus 123 ~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~ 172 (360)
T d1k32a3 123 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF 172 (360)
T ss_dssp EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred eecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCcee
Confidence 356777899999999999998654 3456899999876653
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1e-16 Score=128.25 Aligned_cols=148 Identities=20% Similarity=0.199 Sum_probs=100.2
Q ss_pred eeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 023642 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 119 ~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 198 (279)
....|...|+|++ +|+++|++|+.|++|+|||+.+++++.. +.+|.+.|.+++| ++++|++++.|+.+++|++
T Consensus 10 ~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~---l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~ 82 (293)
T d1p22a2 10 CRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRI---LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 82 (293)
T ss_dssp CCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEE---ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred ccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEE---EecCCCCEeeeec--ccceeeccccccccccccc
Confidence 3567888999865 5799999999999999999999987665 5689999998887 6789999999999999999
Q ss_pred CCCceeeeeccccccce-------eEEeeCCC--------------------CCccccEEEEEEecCCCEEEEecCCCeE
Q 023642 199 GSGTMESLANVTEIHDG-------LDFSAADD--------------------GGYSFGIFSLKFSTDGRELVAGSSDDCI 251 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~-------~~~~~~~~--------------------~~~~~~v~~~~~sp~g~~l~t~s~d~~i 251 (279)
..+.............. ..+..... ..|...+..+.+. ...+++++.|+.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i 160 (293)
T d1p22a2 83 NTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI 160 (293)
T ss_dssp SSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEE
T ss_pred ccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCce
Confidence 88766433321111100 00000000 2244455555444 3355566666777
Q ss_pred EEEECCCCeEEEEEeCCCcceeEE
Q 023642 252 YVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 252 ~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
++||+++++++..+.+|...|..+
T Consensus 161 ~~~d~~~~~~~~~~~~~~~~v~~~ 184 (293)
T d1p22a2 161 KVWNTSTCEFVRTLNGHKRGIACL 184 (293)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEE
T ss_pred eeecCCCCcEEEEEcccccccccc
Confidence 777777666666666666655443
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.76 E-value=3.7e-18 Score=140.54 Aligned_cols=154 Identities=19% Similarity=0.187 Sum_probs=121.9
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
...|..+.+|+...........++...+.++.|+|++.++++++.|+.|++||+.++..+.. +.+|...|.+++|+|
T Consensus 177 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~---~~~h~~~v~~~~~~~ 253 (355)
T d1nexb2 177 GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT---LQGHTALVGLLRLSD 253 (355)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEE---ECCCSSCCCEEEECS
T ss_pred ecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccc---ccccccccccccccc
Confidence 34566777787665555556788999999999999999999999999999999999877654 568899999999865
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEE-EEecCCCEEEEecCCCeEEEEECCC
Q 023642 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSL-KFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 180 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
++|++++.|+.|++||+.++...... |...+.++ .|++++.+|++|+ |+.|++||+++
T Consensus 254 --~~l~~~~~dg~i~iwd~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~t 312 (355)
T d1nexb2 254 --KFLVSAAADGSIRGWDANDYSRKFSY------------------HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS 312 (355)
T ss_dssp --SEEEEECTTSEEEEEETTTCCEEEEE------------------ECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred --ceeeeeecccccccccccccceeccc------------------ccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCC
Confidence 69999999999999999887653211 22234443 5677787776665 89999999999
Q ss_pred CeEEE-EEeCCCcceeEEEe
Q 023642 259 NKLSL-RILAHTVNIALWIT 277 (279)
Q Consensus 259 ~~~~~-~~~~h~~~v~~v~~ 277 (279)
++++. .+.+|...|.++..
T Consensus 313 g~~~~~~~~~~~~~V~~v~~ 332 (355)
T d1nexb2 313 GKLVHANILKDADQIWSVNF 332 (355)
T ss_dssp CCBCCSCTTTTCSEEEEEEE
T ss_pred CCEEEEEecCCCCCEEEEEE
Confidence 99885 56789999988753
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=5.6e-17 Score=130.79 Aligned_cols=132 Identities=16% Similarity=0.186 Sum_probs=105.3
Q ss_pred EEEECCCCCEEEEEeCCC-cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeee
Q 023642 129 VSQFSADGSLFVAGFQAS-QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (279)
Q Consensus 129 ~~~~spd~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 207 (279)
..+++|++..+++++.|+ .+++|++........ ....|...+++++|+|++.+|++++.|+.|++||+.++......
T Consensus 123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~ 200 (287)
T d1pgua2 123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFD--LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR 200 (287)
T ss_dssp EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEE--CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC
T ss_pred eeeeeccCcceeeeccccceeeeeeccccceeee--eeeccCCceeEEEeccCccccccccccccccceeeccccccccc
Confidence 345677888888887765 799999876544333 23457778999999999999999999999999999987753221
Q ss_pred ccccccceeEEeeCCCCCccccEEEEEEecC----------CCEEEEecCCCeEEEEECCC-CeEEEEEeCCCcceeEEE
Q 023642 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----------GRELVAGSSDDCIYVYDLEA-NKLSLRILAHTVNIALWI 276 (279)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----------g~~l~t~s~d~~i~vwd~~~-~~~~~~~~~h~~~v~~v~ 276 (279)
. .+|...|.+++|+|+ +.+|++|+.|++|++||+++ ++.+..+.+|...|+++.
T Consensus 201 ~---------------~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~ 265 (287)
T d1pgua2 201 W---------------AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLL 265 (287)
T ss_dssp S---------------CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEE
T ss_pred c---------------cccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEE
Confidence 1 126678999999874 46899999999999999976 667788889999999986
Q ss_pred e
Q 023642 277 T 277 (279)
Q Consensus 277 ~ 277 (279)
.
T Consensus 266 ~ 266 (287)
T d1pgua2 266 W 266 (287)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.2e-15 Score=120.26 Aligned_cols=154 Identities=20% Similarity=0.251 Sum_probs=113.4
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeee----------------
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI---------------- 163 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------- 163 (279)
++.|+.+.+|++...+....+.+|.+.|++++| ++++|++|+.|+.|++|++..+.......
T Consensus 31 gs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (293)
T d1p22a2 31 GLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMM 108 (293)
T ss_dssp EESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEE
T ss_pred EeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccce
Confidence 567899999998877777789999999999887 57899999999999999998764332211
Q ss_pred ------------------------eccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEe
Q 023642 164 ------------------------LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFS 219 (279)
Q Consensus 164 ------------------------~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 219 (279)
....|...+..+.+. ...+++++.|+.+++||+++++......
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~----------- 175 (293)
T d1p22a2 109 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLN----------- 175 (293)
T ss_dssp EEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEE-----------
T ss_pred eecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEc-----------
Confidence 011333344444433 3466677777778888777766533211
Q ss_pred eCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEE
Q 023642 220 AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALW 275 (279)
Q Consensus 220 ~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v 275 (279)
++...+..+.++ +.++++++.|++|++||+++.+.+..+.+|...|..+
T Consensus 176 -----~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 224 (293)
T d1p22a2 176 -----GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 224 (293)
T ss_dssp -----CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred -----ccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeec
Confidence 134467776665 6689999999999999999999999999998887654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.69 E-value=5.5e-17 Score=138.81 Aligned_cols=104 Identities=13% Similarity=-0.010 Sum_probs=82.5
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEe--eeeeccCCCcceEEEEE
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ--KDILAKSLRWTVTDTSL 177 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~ 177 (279)
.+.++.+.+|+....+....+..|. .+..++|||||++|++++.|+.|++||+.+++... .+....+|...+.+++|
T Consensus 38 ~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~ 116 (426)
T d1hzua2 38 LRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFK 116 (426)
T ss_dssp ETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCST
T ss_pred EcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeee
Confidence 4567889999987766666777774 58999999999999999999999999999886432 22334466667788889
Q ss_pred CCCCCEEEE-EeCCCeEEEEECCCCcee
Q 023642 178 SPDQRHLVY-ASMSPIVHIVDVGSGTME 204 (279)
Q Consensus 178 sp~~~~l~~-~~~d~~i~i~d~~~~~~~ 204 (279)
+|||+++++ +..++.+++||..++...
T Consensus 117 spDG~~l~v~~~~~~~v~i~d~~~~~~~ 144 (426)
T d1hzua2 117 GYEDRYTIAGAYWPPQFAIMDGETLEPK 144 (426)
T ss_dssp TCTTTEEEEEEEESSEEEEEETTTCCEE
T ss_pred cCCCCEEEEeecCCCeEEEEcCCcccee
Confidence 999998755 558899999999887653
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=1.3e-16 Score=130.07 Aligned_cols=70 Identities=16% Similarity=0.076 Sum_probs=56.7
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCe
Q 023642 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (279)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~ 250 (279)
.|.+++|+|++++|++|+.||.|++||+.+++...... +...+..++|+|++++|++++.|++
T Consensus 253 ~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~-----------------~~~~~~~~~~s~~~~~l~~a~sdd~ 315 (342)
T d1yfqa_ 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-----------------KFNEDSVVKIACSDNILCLATSDDT 315 (342)
T ss_dssp CEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-----------------CCSSSEEEEEEECSSEEEEEEECTH
T ss_pred cceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec-----------------CCCCCEEEEEEeCCCEEEEEEcCCc
Confidence 46789999999999999999999999999987643221 1124556888999999999999998
Q ss_pred EEEEECC
Q 023642 251 IYVYDLE 257 (279)
Q Consensus 251 i~vwd~~ 257 (279)
+++|...
T Consensus 316 ~~~~~~~ 322 (342)
T d1yfqa_ 316 FKTNAAI 322 (342)
T ss_dssp HHHCSSS
T ss_pred EEEeeee
Confidence 8888753
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.64 E-value=5.4e-15 Score=126.64 Aligned_cols=157 Identities=12% Similarity=-0.011 Sum_probs=116.1
Q ss_pred eccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE--EeeeeeccCCCcceEEEEE
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK--IQKDILAKSLRWTVTDTSL 177 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~ 177 (279)
.+.++.+.+|+....+....+..+ ..+..++|||||+++++++.|+.|++||+.+++. ...+....+|.+.+.+.+|
T Consensus 38 ~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~ 116 (432)
T d1qksa2 38 LRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKME 116 (432)
T ss_dssp ETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCST
T ss_pred EcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEeccc
Confidence 456778889987777666667776 4699999999999999999999999999987643 2333334456666777888
Q ss_pred CCCCCEE-EEEeCCCeEEEEECCCCceeeeeccccc-cceeEEeeCCCCCccccEEEEEEecCCCEE-EEecCCCeEEEE
Q 023642 178 SPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTEI-HDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVY 254 (279)
Q Consensus 178 sp~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~t~s~d~~i~vw 254 (279)
+|||++| ++++.++.+++||..+++.......... .....+. +......+.++|+|+.+ ++...++.|.+|
T Consensus 117 SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~ 190 (432)
T d1qksa2 117 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH------PEPRVAAILASHYRPEFIVNVKETGKILLV 190 (432)
T ss_dssp TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE------SCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceecc------CCCceeEEEECCCCCEEEEEEccCCeEEEE
Confidence 9999986 6788899999999999987654432111 1111222 22367789999999876 456678899999
Q ss_pred ECCCCeEEE
Q 023642 255 DLEANKLSL 263 (279)
Q Consensus 255 d~~~~~~~~ 263 (279)
|..+++...
T Consensus 191 d~~~~~~~~ 199 (432)
T d1qksa2 191 DYTDLNNLK 199 (432)
T ss_dssp ETTCSSEEE
T ss_pred EccCCCcce
Confidence 998876544
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.60 E-value=1.3e-14 Score=118.47 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=73.8
Q ss_pred eccccceEeeeeecCCCCceeeC--CCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeEEeeeeecc--CCCcceEE
Q 023642 100 SAADCCHMLSRYLPVNGPWPVDQ--TTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAK--SLRWTVTD 174 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~l~~--h~~~V~~~~~spd~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~ 174 (279)
.+.++.+.+|+....+....+.. +...+..++|+|||+++ ++++.++.|.+||+.+++.+....... .+...+..
T Consensus 7 ~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~ 86 (337)
T d1pbyb_ 7 PARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFG 86 (337)
T ss_dssp EETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTC
T ss_pred EcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceee
Confidence 34578888888766554444543 44567899999999987 566789999999999997765532211 12234568
Q ss_pred EEECCCCCEEEEEe------------CCCeEEEEECCCCce
Q 023642 175 TSLSPDQRHLVYAS------------MSPIVHIVDVGSGTM 203 (279)
Q Consensus 175 ~~~sp~~~~l~~~~------------~d~~i~i~d~~~~~~ 203 (279)
++|+|++++++++. .+..+.+||..+++.
T Consensus 87 v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (337)
T d1pbyb_ 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR 127 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE
T ss_pred EEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE
Confidence 99999999987765 355677777766554
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.59 E-value=1e-13 Score=111.46 Aligned_cols=101 Identities=16% Similarity=0.141 Sum_probs=74.1
Q ss_pred ccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECC
Q 023642 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (279)
+.++.+.+|+..+.+....+.. ...+..++|+|||++| ++++.+++|++||+.+++.+... ..+. .+..++|++
T Consensus 9 ~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~---~~~~-~~~~~~~~~ 83 (301)
T d1l0qa2 9 SESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV---PAGS-SPQGVAVSP 83 (301)
T ss_dssp TTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE---ECSS-SEEEEEECT
T ss_pred CCCCEEEEEECCCCeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee---eccc-ccccccccc
Confidence 4567788887655543333433 3557899999999987 56678899999999999876653 2333 478999999
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCceeee
Q 023642 180 DQRHLV-YASMSPIVHIVDVGSGTMESL 206 (279)
Q Consensus 180 ~~~~l~-~~~~d~~i~i~d~~~~~~~~~ 206 (279)
++.+++ ++..++.+.+|+..+++....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (301)
T d1l0qa2 84 DGKQVYVTNMASSTLSVIDTTSNTVAGT 111 (301)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccccccccccccceeeecccccceeeee
Confidence 998765 455677899999988776443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.58 E-value=1.8e-14 Score=118.11 Aligned_cols=110 Identities=9% Similarity=0.033 Sum_probs=76.3
Q ss_pred ccCCCCee---eccccceEeeeeecCCCCceee-CCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeEEeeeeecc
Q 023642 92 NYSGRGRF---SAADCCHMLSRYLPVNGPWPVD-QTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAK 166 (279)
Q Consensus 92 ~~~~~~~~---~~~d~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~spd~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~ 166 (279)
.+++++.| .+.+..+.+|++...+....+. .|...+.+++|+|||+++ +++..++.|.+||+.+++.+.......
T Consensus 3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~ 82 (346)
T d1jmxb_ 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 82 (346)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccc
Confidence 35566665 4567888999886654444454 456678899999999987 556678999999999997765433221
Q ss_pred C---CCcceEEEEECCCCCEEEEEe------------CCCeEEEEECCCC
Q 023642 167 S---LRWTVTDTSLSPDQRHLVYAS------------MSPIVHIVDVGSG 201 (279)
Q Consensus 167 ~---~~~~v~~~~~sp~~~~l~~~~------------~d~~i~i~d~~~~ 201 (279)
. +...+..++|+|||+++++++ .+..+.+||..++
T Consensus 83 ~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~ 132 (346)
T d1jmxb_ 83 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG 132 (346)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred cccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccc
Confidence 1 122466899999999887664 3556666665543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.58 E-value=5.6e-15 Score=126.14 Aligned_cols=121 Identities=14% Similarity=0.004 Sum_probs=95.4
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeE
Q 023642 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLD 217 (279)
Q Consensus 138 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 217 (279)
++++.+.|++|+|||+.+++.+..+. .+. .+..++|+|||++|++++.|+++++||+.+++...........
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~---~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~---- 105 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVID---TGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI---- 105 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEE---CCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS----
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEe---CCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCC----
Confidence 56788899999999999998877632 333 5899999999999999999999999999998764332221111
Q ss_pred EeeCCCCCccccEEEEEEecCCCEEEEe-cCCCeEEEEECCCCeEEEEEeCCCccee
Q 023642 218 FSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTVNIA 273 (279)
Q Consensus 218 ~~~~~~~~~~~~v~~~~~sp~g~~l~t~-s~d~~i~vwd~~~~~~~~~~~~h~~~v~ 273 (279)
+|.+.+.+++|+|||++++++ ..++++.+||..++.++..+.+|...+.
T Consensus 106 -------~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~ 155 (426)
T d1hzua2 106 -------EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD 155 (426)
T ss_dssp -------EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS
T ss_pred -------CCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCcc
Confidence 144577888999999987654 4789999999999999999887765543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.56 E-value=8.9e-15 Score=125.28 Aligned_cols=120 Identities=13% Similarity=-0.100 Sum_probs=93.6
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecccccccee
Q 023642 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL 216 (279)
Q Consensus 137 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 216 (279)
-++++.+.|++|.|||..+++.+..+. .+. .+..++|+|||+++++++.|+.+++||+.+++...........
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~---~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~--- 105 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVLD---TGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS--- 105 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEE---CSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEe---CCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC---
Confidence 345888999999999999998887642 232 5999999999999999999999999999887643222211110
Q ss_pred EEeeCCCCCccccEEEEEEecCCCEE-EEecCCCeEEEEECCCCeEEEEEeCCCcc
Q 023642 217 DFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTVN 271 (279)
Q Consensus 217 ~~~~~~~~~~~~~v~~~~~sp~g~~l-~t~s~d~~i~vwd~~~~~~~~~~~~h~~~ 271 (279)
+|.+.+.+..|+|||++| ++++.+++|++||..+++++..+..|...
T Consensus 106 --------~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~ 153 (432)
T d1qksa2 106 --------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT 153 (432)
T ss_dssp --------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC
T ss_pred --------CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCcc
Confidence 134467777889999986 67778999999999999999998876543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=5.2e-13 Score=108.90 Aligned_cols=146 Identities=15% Similarity=0.082 Sum_probs=104.4
Q ss_pred eccccceEeeeeecCCCCce--eeCCCCCeEEEEECCCCCEEEEE-eCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEE
Q 023642 100 SAADCCHMLSRYLPVNGPWP--VDQTTSRAYVSQFSADGSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176 (279)
Q Consensus 100 ~~~d~~~~~~~~~~~~~~~~--l~~h~~~V~~~~~spd~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 176 (279)
.+.++.+.+|++........ ...|.+.+..++|||||++|+++ ..|+.|++|++..............+...+..++
T Consensus 10 ~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~ 89 (333)
T d1ri6a_ 10 SPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIS 89 (333)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEE
T ss_pred CCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEE
Confidence 35677888998875543333 34788999999999999998555 4589999999986543222222233444678899
Q ss_pred ECCCCCEEEEEeC-CCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CCeEEEE
Q 023642 177 LSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVY 254 (279)
Q Consensus 177 ~sp~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~~i~vw 254 (279)
|+|||++|++++. ++.+.+|+.............. +...+.++.|+|+++++++++. +..|.+|
T Consensus 90 ~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~--------------~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~ 155 (333)
T d1ri6a_ 90 TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--------------GLDGCHSANISPDNRTLWVPALKQDRICLF 155 (333)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--------------CCTTBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred EcCCCCEEeecccCCCceeeeccccccceecccccC--------------CCccceEEEeeecceeeeccccccceeeEE
Confidence 9999999988874 6789999887765433221111 3336778899999998887764 5689999
Q ss_pred ECCCC
Q 023642 255 DLEAN 259 (279)
Q Consensus 255 d~~~~ 259 (279)
+....
T Consensus 156 ~~~~~ 160 (333)
T d1ri6a_ 156 TVSDD 160 (333)
T ss_dssp EECTT
T ss_pred EeccC
Confidence 98764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.41 E-value=3.6e-13 Score=110.13 Aligned_cols=122 Identities=13% Similarity=0.163 Sum_probs=90.9
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEE-EEeCCCeEEEEECCCCceeeeec
Q 023642 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESLAN 208 (279)
Q Consensus 130 ~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~ 208 (279)
++|++++++|++++.|++|.+||+.+++.+.... ..+...+.+++|+|||++++ ++..++.|.+||+.+++......
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~--~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~ 79 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV--MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 79 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEE--CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEE--cCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence 5789999999999999999999999997766532 23445678999999999875 55578999999999998754332
Q ss_pred cccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec------------CCCeEEEEECCCCeEEE
Q 023642 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------------SDDCIYVYDLEANKLSL 263 (279)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s------------~d~~i~vwd~~~~~~~~ 263 (279)
....... +...+..++|+|||+++++++ .+..+.+||..+++...
T Consensus 80 ~~~~~~~----------~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 136 (346)
T d1jmxb_ 80 LSSVPGE----------VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK 136 (346)
T ss_dssp SCCSTTE----------EEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred ccccccc----------cCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeee
Confidence 2211111 112456789999999987664 46778999988765443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.37 E-value=7.3e-12 Score=101.78 Aligned_cols=121 Identities=15% Similarity=0.103 Sum_probs=92.1
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEE-EEeCCCeEEEEECCCCceeeeeccccccce
Q 023642 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (279)
Q Consensus 137 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 215 (279)
.+|++++.|++|.+||+.+++.+..+ ....+...+.+++|+|||++++ +++.++.|.+||+.+++............
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~- 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE- 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE-
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEE-ECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc-
Confidence 47999999999999999999776653 3344445688999999999874 66789999999999998754333211110
Q ss_pred eEEeeCCCCCccccEEEEEEecCCCEEEEec------------CCCeEEEEECCCCeEEEEEeCCC
Q 023642 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS------------SDDCIYVYDLEANKLSLRILAHT 269 (279)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s------------~d~~i~vwd~~~~~~~~~~~~h~ 269 (279)
+...+..++|+|++++++++. .+..+.+||..+++.+..+..+.
T Consensus 80 ----------~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 135 (337)
T d1pbyb_ 80 ----------RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR 135 (337)
T ss_dssp ----------EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS
T ss_pred ----------cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC
Confidence 112455789999999988765 45789999999999998888554
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.35 E-value=5.8e-11 Score=98.33 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=41.2
Q ss_pred cccEEEEEEecCCCE--EEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 227 SFGIFSLKFSTDGRE--LVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 227 ~~~v~~~~~sp~g~~--l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
...+..++|+|||+. +++++.|++|++||+.+++.+.++.++....+.+.
T Consensus 317 ~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~ 368 (373)
T d2madh_ 317 GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLS 368 (373)
T ss_pred CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEE
Confidence 356788999999984 46788999999999999999999997766655553
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.25 E-value=2.4e-10 Score=91.21 Aligned_cols=111 Identities=15% Similarity=0.156 Sum_probs=86.0
Q ss_pred EEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEE-EEeCCCeEEEEECCCCceeeeeccccccceeEE
Q 023642 140 VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESLANVTEIHDGLDF 218 (279)
Q Consensus 140 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 218 (279)
++++.|++|.+||+.+++.+..+. ....+..++|+|||++|+ +++.++.|++||+.+++.......
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~----~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~--------- 72 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIP----VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA--------- 72 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC---------
T ss_pred EEECCCCEEEEEECCCCeEEEEEE----CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec---------
Confidence 567789999999999997766532 223578999999999875 666889999999999887543221
Q ss_pred eeCCCCCccccEEEEEEecCCCEEE-EecCCCeEEEEECCCCeEEEEEeCCCcc
Q 023642 219 SAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRILAHTVN 271 (279)
Q Consensus 219 ~~~~~~~~~~~v~~~~~sp~g~~l~-t~s~d~~i~vwd~~~~~~~~~~~~h~~~ 271 (279)
+ ..+..++|++++.+++ ++..+..+.+|+..+++.+..+..+...
T Consensus 73 -------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (301)
T d1l0qa2 73 -------G-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSP 118 (301)
T ss_dssp -------S-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred -------c-ccccccccccccccccccccccceeeecccccceeeeeccccccc
Confidence 1 2568899999998665 4556789999999999999988866543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=1.4e-10 Score=94.13 Aligned_cols=113 Identities=16% Similarity=0.114 Sum_probs=78.8
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCCceeeeecccccccee
Q 023642 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGL 216 (279)
Q Consensus 138 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 216 (279)
.+++++.|++|++|++.....+... ....|.+.+..++|+|||++|++++ .|+.|++|++...........
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~-~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~------- 77 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLT-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA------- 77 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEE-EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE-------
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEE-EEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEee-------
Confidence 3577789999999999765333221 1235667899999999999986555 589999999976543211110
Q ss_pred EEeeCCCCCccccEEEEEEecCCCEEEEecC-CCeEEEEECCCCeEEEE
Q 023642 217 DFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLR 264 (279)
Q Consensus 217 ~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~~i~vwd~~~~~~~~~ 264 (279)
... +...+..++|+|||++|++++. ++.|.+|+.........
T Consensus 78 -~~~-----~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~ 120 (333)
T d1ri6a_ 78 -ESA-----LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 120 (333)
T ss_dssp -EEE-----CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred -ecc-----cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceec
Confidence 000 1225677999999999998875 67899998877654433
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.16 E-value=9.4e-10 Score=90.84 Aligned_cols=142 Identities=8% Similarity=-0.058 Sum_probs=98.6
Q ss_pred eCCCCCeEEEEECCCCCEEEEE-----eCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe-------
Q 023642 121 DQTTSRAYVSQFSADGSLFVAG-----FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS------- 188 (279)
Q Consensus 121 ~~h~~~V~~~~~spd~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~------- 188 (279)
..+..++..++++|||+.++.. +.++.|.+||..+++.+..+ ..+ ....++|+|||++|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~---~~~--~~~~~a~SpDG~~l~va~~~~~~~~ 91 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV---NGG--FLPNPVAAHSGSEFALASTSFSRIA 91 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEE---eCC--CCccEEEcCCCCEEEEEeecCCccc
Confidence 4578899999999999998764 23467999999999877652 223 234799999999998875
Q ss_pred ---CCCeEEEEECCCCceeeeeccccc--------cceeEEeeCCC-----------------------CCccccEEEEE
Q 023642 189 ---MSPIVHIVDVGSGTMESLANVTEI--------HDGLDFSAADD-----------------------GGYSFGIFSLK 234 (279)
Q Consensus 189 ---~d~~i~i~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~-----------------------~~~~~~v~~~~ 234 (279)
.++.|.+||..+++.......... ...+.|..++. ..+.....++.
T Consensus 92 ~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (373)
T d2madh_ 92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYH 171 (373)
T ss_pred ccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEE
Confidence 357899999999887543321111 11222333322 11223456788
Q ss_pred EecCCCEE-EEecCCCeEEEEECCCCeEEEEEeC
Q 023642 235 FSTDGREL-VAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 235 ~sp~g~~l-~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
|+|+|+.+ ++.+.|+.+.+|+..+++.......
T Consensus 172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~ 205 (373)
T d2madh_ 172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG 205 (373)
T ss_pred EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEee
Confidence 99998765 5788899999999998877766543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.15 E-value=4.2e-10 Score=93.32 Aligned_cols=100 Identities=11% Similarity=-0.052 Sum_probs=66.5
Q ss_pred cceEeeeeecCCCC--ceeeCCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEEcCCCeEEeeeeeccC----
Q 023642 104 CCHMLSRYLPVNGP--WPVDQTTSRAYVSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKS---- 167 (279)
Q Consensus 104 ~~~~~~~~~~~~~~--~~l~~h~~~V~~~~~spd~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~---- 167 (279)
+...+|-+...... ..+.++... .++|+|||+.|+.++ .|+.|.+||..+++.+........
T Consensus 44 g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~ 121 (368)
T d1mdah_ 44 GTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp SSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred CcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceec
Confidence 33444544333322 234445444 589999999988764 367899999999977665432111
Q ss_pred CCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCCceee
Q 023642 168 LRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMES 205 (279)
Q Consensus 168 ~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~~~ 205 (279)
.......++|+|||++|++++ .++.+.+||+.+++...
T Consensus 122 ~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~ 160 (368)
T d1mdah_ 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQ 160 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEE
T ss_pred ccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeE
Confidence 111234689999999998776 56899999998877543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.15 E-value=7.2e-11 Score=101.35 Aligned_cols=142 Identities=13% Similarity=0.107 Sum_probs=97.3
Q ss_pred ccccceEeeeeecCCCCc-----eeeCCCCCeEEEEECCCCCEEEEEeC---------CCcEEEEEcCCCeEEeeeeecc
Q 023642 101 AADCCHMLSRYLPVNGPW-----PVDQTTSRAYVSQFSADGSLFVAGFQ---------ASQIRIYDVERGWKIQKDILAK 166 (279)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~-----~l~~h~~~V~~~~~spd~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~ 166 (279)
..++.+.+|+........ .+..|...|.++.|||||++|+.++. ++.+.+||+.+++.. .+.
T Consensus 33 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~----~l~ 108 (470)
T d2bgra1 33 KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEE 108 (470)
T ss_dssp ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSS
T ss_pred EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc----ccc
Confidence 345567777766554433 34556688999999999999998754 467889999998542 246
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC----CCccccEEEEEEecCCCEE
Q 023642 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD----GGYSFGIFSLKFSTDGREL 242 (279)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~sp~g~~l 242 (279)
.+...+..+.|||||+.||.. .++.+++|+..++......... .....+.+..+ ....+....+.|||||++|
T Consensus 109 ~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~--~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~i 185 (470)
T d2bgra1 109 RIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTG--KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFL 185 (470)
T ss_dssp CCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCC--BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEE
T ss_pred cCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeecc--CCCcccccccceeeeeeecCCccccEECCCCCcc
Confidence 777789999999999999986 4678999999988765433211 11112222211 0011234567899999999
Q ss_pred EEecCCC
Q 023642 243 VAGSSDD 249 (279)
Q Consensus 243 ~t~s~d~ 249 (279)
++...|.
T Consensus 186 a~~~~d~ 192 (470)
T d2bgra1 186 AYAQFND 192 (470)
T ss_dssp EEEEEEC
T ss_pred ceeEecC
Confidence 9876543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.13 E-value=2.6e-10 Score=93.50 Aligned_cols=134 Identities=13% Similarity=0.073 Sum_probs=95.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCC----------CcceEEEEECCCCCEEEEEeCC--
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL----------RWTVTDTSLSPDQRHLVYASMS-- 190 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----------~~~v~~~~~sp~~~~l~~~~~d-- 190 (279)
+...+....+++++..++.++.++.+.+|++..+...... ....+ ......++++|++..++....+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~ 271 (355)
T d2bbkh_ 193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLP-AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD 271 (355)
T ss_dssp TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECC-CEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC
T ss_pred ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEe-ccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCC
Confidence 4445666788888899999999999999999877432110 01111 1123458899999987765533
Q ss_pred --------CeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC--EEEEecCCCeEEEEECCCCe
Q 023642 191 --------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANK 260 (279)
Q Consensus 191 --------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~t~s~d~~i~vwd~~~~~ 260 (279)
..|.+||..+++....... ...+.+++|+|||+ ++++++.|++|++||+++++
T Consensus 272 ~~~~~~~~~~v~v~d~~t~~~~~~~~~-----------------~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 272 EWRHKTASRFVVVLDAKTGERLAKFEM-----------------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 334 (355)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEEE-----------------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred ceeecCCCCeEEEEeCCCCcEEEEecC-----------------CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence 3699999999886433221 12578999999998 35677789999999999999
Q ss_pred EEEEEeCCCcceeE
Q 023642 261 LSLRILAHTVNIAL 274 (279)
Q Consensus 261 ~~~~~~~h~~~v~~ 274 (279)
.+.++.++......
T Consensus 335 ~~~~i~~~G~~p~~ 348 (355)
T d2bbkh_ 335 ELRSVNQLGHGPQV 348 (355)
T ss_dssp EEEEECCCCSSCCE
T ss_pred EEEEEeCcCCCccE
Confidence 99999876544333
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.08 E-value=3.3e-10 Score=97.10 Aligned_cols=118 Identities=15% Similarity=0.106 Sum_probs=90.8
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeee--eeccCCCcceEEEEECCCCCEEEEEeC---------CCeEEEEE
Q 023642 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD--ILAKSLRWTVTDTSLSPDQRHLVYASM---------SPIVHIVD 197 (279)
Q Consensus 129 ~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~---------d~~i~i~d 197 (279)
.+.|.+|++++. ..|+.+.+||+.+++....+ ..+..|...|.++.|||||++|+.++. ++.+.+||
T Consensus 21 ~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 477999998775 45788999999999654321 123455678999999999999988753 46789999
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
+.+++...+.. +...+..+.|||||+++|... ++.+++|+..+++..+...
T Consensus 99 ~~~~~~~~l~~-----------------~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~ 149 (470)
T d2bgra1 99 LNKRQLITEER-----------------IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITW 149 (470)
T ss_dssp TTTTEECCSSC-----------------CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCS
T ss_pred CCCCccccccc-----------------CCccccccccccCcceeeEee-cccceEEECCCCceeeeee
Confidence 99987643322 344789999999999999854 6789999999988766544
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.03 E-value=7.9e-10 Score=90.53 Aligned_cols=130 Identities=15% Similarity=0.068 Sum_probs=91.2
Q ss_pred CeEEEEECCCCCEEEEEe-----CCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe----------CC
Q 023642 126 RAYVSQFSADGSLFVAGF-----QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MS 190 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------~d 190 (279)
++...+.+||++.++... .+.+|.+||..+++.+.... .+ ....++|+|||++|++.+ .|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~---~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d 77 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID---GG--FLPNPVVADDGSFIAHASTVFSRIARGERT 77 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE---EC--SSCEEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE---CC--CCCceEEcCCCCEEEEEeCCCccccccCCC
Confidence 344456789999987653 35679999999998776532 22 344799999999887654 47
Q ss_pred CeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec--CCCeEEEEECCCCeEEEEEeCC
Q 023642 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAH 268 (279)
Q Consensus 191 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s--~d~~i~vwd~~~~~~~~~~~~h 268 (279)
+.|++||+.+++............ + ........++|+|++++++.++ .+..+.+|+..+++.+..+..+
T Consensus 78 ~~v~v~D~~t~~~~~~~~~~~~~~---~------~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (355)
T d2bbkh_ 78 DYVEVFDPVTLLPTADIELPDAPR---F------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP 148 (355)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCC---C------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred CEEEEEECCCCCEEEEEecCCcce---e------ecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecC
Confidence 899999999988754332211110 0 0111234578999999887654 4678999999999999888765
Q ss_pred C
Q 023642 269 T 269 (279)
Q Consensus 269 ~ 269 (279)
.
T Consensus 149 ~ 149 (355)
T d2bbkh_ 149 D 149 (355)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.68 E-value=8.3e-08 Score=79.08 Aligned_cols=134 Identities=7% Similarity=-0.060 Sum_probs=89.0
Q ss_pred CCCCeEEEEECCCCCEEEE---EeCCC--cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe---------
Q 023642 123 TTSRAYVSQFSADGSLFVA---GFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS--------- 188 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s---~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--------- 188 (279)
+.++...++..++++.... ...++ .|.+||..+++.+.... .+. ...++|+|||++|+..+
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~---~~~--~~~~a~spDg~~i~~~~~~~~~~~~g 92 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSL---GAF--LSLAVAGHSGSDFALASTSFARSAKG 92 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE---ECT--TCEEEECTTSSCEEEEEEEETTTTSS
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEe---CCC--CCcceECCCCCEEEEEcccCcccccc
Confidence 3445555566788875422 23344 57777999997766532 222 23589999999988765
Q ss_pred -CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec-CCCeEEEEECCCCeEEEEEe
Q 023642 189 -MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 189 -~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s-~d~~i~vwd~~~~~~~~~~~ 266 (279)
.|+.|.+||..+++............ +. .......++|+|||++|+++. .++.+.+||+.+++.+..+.
T Consensus 93 ~~d~~v~v~D~~t~~~~~~i~~p~~~~---~~------~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~ 163 (368)
T d1mdah_ 93 KRTDYVEVFDPVTFLPIADIELPDAPR---FS------VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTK 163 (368)
T ss_dssp SEEEEEEEECTTTCCEEEEEEETTSCS---CC------BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEE
T ss_pred ccCCeEEEEECCCCcEeeeecCCccce---ec------ccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEee
Confidence 36789999999988754332211100 00 001224589999999998775 57899999999999999887
Q ss_pred CCCc
Q 023642 267 AHTV 270 (279)
Q Consensus 267 ~h~~ 270 (279)
.+..
T Consensus 164 ~~~~ 167 (368)
T d1mdah_ 164 SASC 167 (368)
T ss_dssp CSSC
T ss_pred ccCc
Confidence 6543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.56 E-value=1.9e-06 Score=68.86 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=88.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce--
Q 023642 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM-- 203 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~-- 203 (279)
.+..++++|||+++++...+++|..||....... +......+.+++|+|||+++++...++.+..|+......
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~-----~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~ 103 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI-----HATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 103 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE-----EEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEE-----EEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccce
Confidence 5778999999999999999999999886654222 123445799999999999999988888888887654332
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEE
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL 263 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~ 263 (279)
..+... . .......+++.++|+++++-+.++.+..+|...+....
T Consensus 104 ~~~~~~----------~-----~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~ 148 (302)
T d2p4oa1 104 ETLLTL----------P-----DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSI 148 (302)
T ss_dssp EEEEEC----------T-----TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred eecccc----------C-----CccccceeEEccCCCEEeeccccccceeeeccCCccee
Confidence 111111 0 12367889999999999998889999999988776443
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.54 E-value=2.4e-05 Score=60.63 Aligned_cols=72 Identities=21% Similarity=0.200 Sum_probs=53.0
Q ss_pred cCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCC---cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEe
Q 023642 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQAS---QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 188 (279)
Q Consensus 113 ~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 188 (279)
.......+..+...+...+|||||+.||....+. .+.+.+...+.... ...+........|+|+|+.++...
T Consensus 27 dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~spdg~~i~~~~ 101 (269)
T d2hqsa1 27 DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ----VASFPRHNGAPAFSPDGSKLAFAL 101 (269)
T ss_dssp TSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE----EECCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE----EeeeecccccceecCCCCeeeEee
Confidence 4555666777788899999999999998765443 47777777664432 234556788899999999887655
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.39 E-value=7.9e-06 Score=65.17 Aligned_cols=167 Identities=12% Similarity=0.101 Sum_probs=104.1
Q ss_pred ccCCCCeee-ccccceEeeeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCc
Q 023642 92 NYSGRGRFS-AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW 170 (279)
Q Consensus 92 ~~~~~~~~~-~~d~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 170 (279)
.+.++|.+. +....-.+|.+.+......+......+.+++|+|||+++++...++.+.+|+..................
T Consensus 34 Av~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (302)
T d2p4oa1 34 ASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAI 113 (302)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCS
T ss_pred EECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCcc
Confidence 345566552 2222334566666555556677788999999999999999998888998888764322111111223344
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecccc-----------ccceeEE------ee-CCC---------
Q 023642 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTE-----------IHDGLDF------SA-ADD--------- 223 (279)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----------~~~~~~~------~~-~~~--------- 223 (279)
....+++.++++++++-+.++.+..+|..++.......... ...++.+ .. ...
T Consensus 114 ~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~ 193 (302)
T d2p4oa1 114 FLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVD 193 (302)
T ss_dssp CEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBC
T ss_pred ccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEecccc
Confidence 68899999999999988888899999888765322111000 0001100 00 000
Q ss_pred -CC---------ccccEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 023642 224 -GG---------YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 224 -~~---------~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~ 258 (279)
.+ .......++|.++|+++++...++.|..++...
T Consensus 194 ~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G 238 (302)
T d2p4oa1 194 STDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR 238 (302)
T ss_dssp TTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred ccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence 00 012234689999999888877888899887653
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.34 E-value=4e-05 Score=62.72 Aligned_cols=79 Identities=8% Similarity=-0.055 Sum_probs=55.0
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCeEEe--eeeeccCCCcceEEEEECCCCCEEEEEe-CCCeEEEEECC
Q 023642 124 TSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQ--KDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVG 199 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~-d~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~ 199 (279)
...+.++.|+|||+++++++. ..+|.+|+......+. ............+.++|+|++++++... .+++|.+|++.
T Consensus 144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~ 223 (365)
T d1jofa_ 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence 345789999999998887754 3578888765432211 1111223345689999999999876555 67899999987
Q ss_pred CCc
Q 023642 200 SGT 202 (279)
Q Consensus 200 ~~~ 202 (279)
.+.
T Consensus 224 ~~~ 226 (365)
T d1jofa_ 224 PAT 226 (365)
T ss_dssp TTT
T ss_pred CCC
Confidence 654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.23 E-value=8.2e-06 Score=68.26 Aligned_cols=82 Identities=6% Similarity=-0.015 Sum_probs=56.3
Q ss_pred eCCCCCeEEEEECCCCCEEEEE-eCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCE--EEEEeCCC------
Q 023642 121 DQTTSRAYVSQFSADGSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH--LVYASMSP------ 191 (279)
Q Consensus 121 ~~h~~~V~~~~~spd~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~~~~d~------ 191 (279)
..|.-......++|||++|+.. ..+++|.++|++++++..... ..+...+..++|+|+|+. ++..+.+.
T Consensus 68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~--iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~d 145 (441)
T d1qnia2 68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITH--IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND 145 (441)
T ss_dssp CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEE--CTTCCCEEEEEECCSSBCCEEEEEECSCEESSCS
T ss_pred cccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEe--cCCCCCccceEEeccCCEEEEEeccCCcccccCc
Confidence 3455566667778999998655 567899999999997655422 234457999999999984 44444332
Q ss_pred -----------eEEEEECCCCcee
Q 023642 192 -----------IVHIVDVGSGTME 204 (279)
Q Consensus 192 -----------~i~i~d~~~~~~~ 204 (279)
.+..+|..+.+..
T Consensus 146 g~~~~~~~~~~~~~~iD~~t~~v~ 169 (441)
T d1qnia2 146 GTDFSLDNSYTMFTAIDAETMDVA 169 (441)
T ss_dssp SSCCCGGGEEEEEEEEETTTCSEE
T ss_pred ccccccccccceEEeecCccceee
Confidence 2355777776653
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.13 E-value=3.6e-05 Score=59.80 Aligned_cols=117 Identities=14% Similarity=0.207 Sum_probs=76.9
Q ss_pred EECCC--CCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC-C-----CeEEEEECCCCc
Q 023642 131 QFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-S-----PIVHIVDVGSGT 202 (279)
Q Consensus 131 ~~spd--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d-----~~i~i~d~~~~~ 202 (279)
.+||| |++++..+. +.|.+.|+.+++... +..+.+.+...+|||||+.||.... + ..|.+++..+++
T Consensus 5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~~----Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~ 79 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTRK----IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE 79 (281)
T ss_dssp CEEEEEETTEEEEEET-TEEEEEETTTCCEEE----EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred ccCCCCCCCEEEEEeC-CcEEEEECCCCCEEE----EecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence 46788 999887655 578888999886533 2355567889999999999886542 2 248888888888
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC------CCeEEEEECCCCeEE
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLS 262 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~------d~~i~vwd~~~~~~~ 262 (279)
...+......... .........|+|+|+.|+.... ...+...+...+...
T Consensus 80 ~~~lt~~~~~~~~----------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (281)
T d1k32a2 80 IKRITYFSGKSTG----------RRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV 135 (281)
T ss_dssp EEECCCCCEEEET----------TEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE
T ss_pred eEEeeecCCCccC----------ccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE
Confidence 7554322111100 1124567899999999886432 224666676655443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.05 E-value=9.7e-05 Score=59.06 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=80.1
Q ss_pred CCCeEEEEECCCCC-----EEEEEeCCCcEEEEEcCCCeEEeee---eecc-CCCcceEEEEECCCCCEEEEEeCCCeEE
Q 023642 124 TSRAYVSQFSADGS-----LFVAGFQASQIRIYDVERGWKIQKD---ILAK-SLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (279)
Q Consensus 124 ~~~V~~~~~spd~~-----~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 194 (279)
...-+.++|+|++. ++++-+..++|..||+.....+... ..+. ......-.+++.++|+++++....+.|.
T Consensus 171 ~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~ 250 (314)
T d1pjxa_ 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEE
Confidence 34456889998765 4455577889999987643222111 1111 1223456899999999988888889999
Q ss_pred EEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCC-EEEEecCCCeEEEEECCC
Q 023642 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEA 258 (279)
Q Consensus 195 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~t~s~d~~i~vwd~~~ 258 (279)
+||..++........ ....+.+++|.|+++ .++|.+.++.|...++..
T Consensus 251 ~~dp~~g~~~~~i~~----------------p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 251 VFGPDGGQPKMRIRC----------------PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EECTTCBSCSEEEEC----------------SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEeCCCCEEEEEEEC----------------CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 999887765332211 112678999999987 456777788888888753
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=1.7e-05 Score=67.29 Aligned_cols=141 Identities=10% Similarity=0.049 Sum_probs=84.2
Q ss_pred cccceEeeeeecCCCCceeeCC---CCCeEEEEECCCCCEEEEEeC---------CCcEEEEEcCCCeEEeeeeeccCCC
Q 023642 102 ADCCHMLSRYLPVNGPWPVDQT---TSRAYVSQFSADGSLFVAGFQ---------ASQIRIYDVERGWKIQKDILAKSLR 169 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~~~~l~~h---~~~V~~~~~spd~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~ 169 (279)
.++.+.+++.........+... ...+....||||+++++.+.. .+.+.++|+.++..... .......
T Consensus 35 ~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l-~~~~~~~ 113 (465)
T d1xfda1 35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL-DPPEVSN 113 (465)
T ss_dssp SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC-CCTTCCS
T ss_pred CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeec-cCccCCc
Confidence 3445566655544433333322 235677889999999887643 46788999998854322 1122233
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeeccccccceeEEeeCCC----CCccccEEEEEEecCCCEEEEe
Q 023642 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD----GGYSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~sp~g~~l~t~ 245 (279)
..+....|||||+.||... ++.+.+.+..++....+.. ....+..+.+..+ ..-.+.-..+-|||||++||..
T Consensus 114 ~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~--~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~ 190 (465)
T d1xfda1 114 AKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVS--TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA 190 (465)
T ss_dssp CCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEEC--CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred cccceeeeccCCceEEEEe-cceEEEEecCCCceEEEec--ccCcceeeccccchhhhhhhccccceEEECCCCCeEEEE
Confidence 4566789999999998876 5678888887776544332 1111222222221 0000112467799999999976
Q ss_pred c
Q 023642 246 S 246 (279)
Q Consensus 246 s 246 (279)
.
T Consensus 191 ~ 191 (465)
T d1xfda1 191 A 191 (465)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.99 E-value=0.0016 Score=51.26 Aligned_cols=165 Identities=14% Similarity=0.059 Sum_probs=97.7
Q ss_pred eeeecCCCCceeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeec-cCCCcceEEEEECCCCCEEEEE
Q 023642 109 SRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KSLRWTVTDTSLSPDQRHLVYA 187 (279)
Q Consensus 109 ~~~~~~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~ 187 (279)
+++.+.............+.++++.++|.++++ +.+ .|.++|..+++........ ......+.++.+.|+|++.++.
T Consensus 43 ~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~ 120 (295)
T d2ghsa1 43 HELHLASGRKTVHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGT 120 (295)
T ss_dssp EEEETTTTEEEEEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEE
T ss_pred EEEECCCCeEEEEECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEe
Confidence 334344333344445677899999999887765 444 6999999988543221111 1112357899999999987765
Q ss_pred eC----CCeEEEEECCCCceeeeeccccccceeEEeeCCC----------------------------------CCcccc
Q 023642 188 SM----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD----------------------------------GGYSFG 229 (279)
Q Consensus 188 ~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~ 229 (279)
.. .+.-.+|.+..++...+........+..++.+.. .+-.+.
T Consensus 121 ~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~ 200 (295)
T d2ghsa1 121 MGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGG 200 (295)
T ss_dssp EETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSE
T ss_pred ccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCccccc
Confidence 42 2234556555555433332222222322222221 011234
Q ss_pred EEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 230 v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
...+++..+|.+.++.-..+.|..|| ..|+.+..+.-....+++++
T Consensus 201 pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~ 246 (295)
T d2ghsa1 201 MDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPA 246 (295)
T ss_dssp EEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEE
T ss_pred ccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEE
Confidence 56788888888777666677899999 46888888876555555554
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.96 E-value=7.6e-05 Score=62.26 Aligned_cols=114 Identities=11% Similarity=0.122 Sum_probs=78.1
Q ss_pred EEEEeCCCcEEEEEcCCCeEEeeeeecc---------------------------CCCcceEEEEECCCCCEEEEEe-CC
Q 023642 139 FVAGFQASQIRIYDVERGWKIQKDILAK---------------------------SLRWTVTDTSLSPDQRHLVYAS-MS 190 (279)
Q Consensus 139 l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------------------------~~~~~v~~~~~sp~~~~l~~~~-~d 190 (279)
+++++.+|+|++||+.+++.+..+..+. .|.-......++|||++|+... .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 5788899999999999998776643321 1222344555689999986665 77
Q ss_pred CeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCE--EEEecCCC-----------------eE
Q 023642 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE--LVAGSSDD-----------------CI 251 (279)
Q Consensus 191 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~--l~t~s~d~-----------------~i 251 (279)
.+|.++|+.+.+........ +...+..++|+|+|++ ++..+.+. .+
T Consensus 94 ~rVavIDl~t~k~~~ii~iP---------------~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~ 158 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIP---------------NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMF 158 (441)
T ss_dssp TEEEEEETTTTEEEEEEECT---------------TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEE
T ss_pred CEEEEEECCCCcEeeEEecC---------------CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceE
Confidence 89999999998875544321 2236888999999884 44433332 24
Q ss_pred EEEECCCCeEEEEEeC
Q 023642 252 YVYDLEANKLSLRILA 267 (279)
Q Consensus 252 ~vwd~~~~~~~~~~~~ 267 (279)
..+|..+.+...++..
T Consensus 159 ~~iD~~t~~v~~qI~v 174 (441)
T d1qnia2 159 TAIDAETMDVAWQVIV 174 (441)
T ss_dssp EEEETTTCSEEEEEEE
T ss_pred EeecCccceeeEEEec
Confidence 5688888777766653
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.93 E-value=0.00034 Score=54.64 Aligned_cols=120 Identities=13% Similarity=0.163 Sum_probs=83.7
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC-CCeEEEEECCC
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGS 200 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~i~d~~~ 200 (279)
.+......+++.++++.+++....+.|.+||... +.+..+. ..+......++++.|+|+.+++-.. ++.|.+|+..
T Consensus 154 ~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~~~~~g-~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~- 230 (279)
T d1q7fa_ 154 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQIG-GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD- 230 (279)
T ss_dssp TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEES-CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-
T ss_pred ccccccceeeeccceeEEeeeccccceeeeecCC-ceeeeec-ccccccCCcccccccCCeEEEEECCCCcEEEEECCC-
Confidence 4567788999999999999988899999999764 4443321 2234446789999999997776543 4579999854
Q ss_pred CceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
|+...... ... .......+++.|+|.++++ +.+..|++|.....
T Consensus 231 G~~~~~~~-----------~~~---~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 231 GQLISALE-----------SKV---KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 274 (279)
T ss_dssp SCEEEEEE-----------ESS---CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCEEEEEe-----------CCC---CCCCEeEEEEeCCCcEEEE-eCCCeEEEEEeeee
Confidence 55322111 100 1125788999999976554 57889999998654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.90 E-value=0.00094 Score=51.42 Aligned_cols=117 Identities=8% Similarity=-0.020 Sum_probs=82.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
.....+++++++++++++-.....+..++......... ...+ .....++++.|+++.+++...++.|..+|......
T Consensus 97 ~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~--~~~~-~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~ 173 (260)
T d1rwia_ 97 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--PFTG-LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 173 (260)
T ss_dssp CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEEC--CCCS-CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred eeecccccccccceeEeeccccccccccccccceeeee--eecc-cCCcceeeecCCCCEeeecccccccccccccccee
Confidence 35678999999999888777777787887665432111 1122 22467899999999888888888999999876554
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCC
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~ 259 (279)
...... .......+++.++|.++++....+.|..++....
T Consensus 174 ~~~~~~----------------~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~ 213 (260)
T d1rwia_ 174 VVLPFT----------------DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 213 (260)
T ss_dssp EECCCS----------------SCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred eeeecc----------------ccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence 322110 1125678999999998888877888888876543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.84 E-value=0.0028 Score=50.28 Aligned_cols=145 Identities=16% Similarity=0.088 Sum_probs=83.0
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCC----CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC------
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM------ 189 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------ 189 (279)
+.........++++|||+++++...+ +.+...+...+..... .....-......+++.|+|++.++...
T Consensus 77 ~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~ 155 (319)
T d2dg1a1 77 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI-IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 155 (319)
T ss_dssp EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE-ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred EeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeee-ccCCCcccCCcceeEEeccceeecccccccccC
Confidence 34556678899999999988876432 3344445444432221 111122234778999999987766432
Q ss_pred CCeEEEEECCCCceeeeeccccccceeEEeeCCC-------------------CC---------------ccccEEEEEE
Q 023642 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD-------------------GG---------------YSFGIFSLKF 235 (279)
Q Consensus 190 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~---------------~~~~v~~~~~ 235 (279)
.+.+..++...+....+........++.+.++++ .+ .......+++
T Consensus 156 ~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~v 235 (319)
T d2dg1a1 156 LGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI 235 (319)
T ss_dssp CEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEE
T ss_pred cceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeE
Confidence 1234445544443332222222233333333332 00 0112346788
Q ss_pred ecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 236 STDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 236 sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
.++|++.++....+.|.+||- .|+.+.++.
T Consensus 236 D~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~ 265 (319)
T d2dg1a1 236 DSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL 265 (319)
T ss_dssp BTTCCEEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred cCCCCEEEEEcCCCEEEEECC-CCcEEEEEe
Confidence 888988888778889999994 688888775
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=1.7e-05 Score=67.33 Aligned_cols=119 Identities=14% Similarity=0.172 Sum_probs=80.2
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccC-CCcceEEEEECCCCCEEEEEe---------CCCeEEEEECCC
Q 023642 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSLSPDQRHLVYAS---------MSPIVHIVDVGS 200 (279)
Q Consensus 131 ~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~---------~d~~i~i~d~~~ 200 (279)
.|.+++.++. -..++.|.+||+.+++.... ..... ....+....||||+++++... ..+.+.++|+.+
T Consensus 23 ~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~ 100 (465)
T d1xfda1 23 KWISDTEFIY-REQKGTVRLWNVETNTSTVL-IEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (465)
T ss_dssp CBSSSSCBCC-CCSSSCEEEBCGGGCCCEEE-ECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred EEeCCCcEEE-EeCCCcEEEEECCCCCEEEE-EcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence 4777776554 35567899999988754221 11111 223577889999999987764 356789999999
Q ss_pred CceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
+....+..... ....+....|||||+.||... ++.|++.+..++..++...
T Consensus 101 ~~~~~l~~~~~--------------~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~ 151 (465)
T d1xfda1 101 GDPQSLDPPEV--------------SNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVS 151 (465)
T ss_dssp CCCEECCCTTC--------------CSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEEC
T ss_pred CceeeccCccC--------------CccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEec
Confidence 88654432211 112455678999999998765 5679999988877665543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.76 E-value=0.0023 Score=50.76 Aligned_cols=150 Identities=13% Similarity=0.111 Sum_probs=85.6
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCC-cceEEEEECCCCCEEEEEeC---------------
Q 023642 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTVTDTSLSPDQRHLVYASM--------------- 189 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~--------------- 189 (279)
.-..++|+++++.++++...+.|..+|.+.+..........+.. ....++++.|+|++.++-..
T Consensus 72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~ 151 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK 151 (314)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccC
Confidence 35689999999988888877889999987663322111111111 12577899999988776421
Q ss_pred CCeEEEEECCCCceeeeeccccccceeEEeeCCC-------------------------------------CCccccEEE
Q 023642 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD-------------------------------------GGYSFGIFS 232 (279)
Q Consensus 190 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~v~~ 232 (279)
++.+..++.. ++............++.+.+..+ .......-.
T Consensus 152 ~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdG 230 (314)
T d1pjxa_ 152 FGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG 230 (314)
T ss_dssp CEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred CceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccccccee
Confidence 2234334332 22211111111111222211110 001123456
Q ss_pred EEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeEEE
Q 023642 233 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIALWI 276 (279)
Q Consensus 233 ~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~v~ 276 (279)
+++..+|++.++....+.|.+||.++++.+..+..+....++++
T Consensus 231 iavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~a 274 (314)
T d1pjxa_ 231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLH 274 (314)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEE
T ss_pred eEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEE
Confidence 88888999888777788999999888877777766555555543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.72 E-value=0.00093 Score=51.35 Aligned_cols=75 Identities=12% Similarity=0.162 Sum_probs=50.2
Q ss_pred CCCCceeeCCCCCeEEEEECCCCCEEEEEeC-C-----CcEEEEEcCCCeEEeeeeec---cCCCcceEEEEECCCCCEE
Q 023642 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ-A-----SQIRIYDVERGWKIQKDILA---KSLRWTVTDTSLSPDQRHL 184 (279)
Q Consensus 114 ~~~~~~l~~h~~~V~~~~~spd~~~l~s~~~-d-----~~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l 184 (279)
......|..+.+.+...+|||||+.||.... + ..|.+++..++......... ..........+|+|||+.|
T Consensus 30 ~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l 109 (281)
T d1k32a2 30 SGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLI 109 (281)
T ss_dssp TCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEE
T ss_pred CCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEE
Confidence 3344557888889999999999999986532 2 24778888888554321100 1122345778999999998
Q ss_pred EEEe
Q 023642 185 VYAS 188 (279)
Q Consensus 185 ~~~~ 188 (279)
+...
T Consensus 110 ~~~~ 113 (281)
T d1k32a2 110 ISTD 113 (281)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 8654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.72 E-value=0.00057 Score=52.71 Aligned_cols=115 Identities=11% Similarity=0.013 Sum_probs=80.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 203 (279)
......++++|+++++++...++.|..+|.+....... ....-.....+++.++|+++++....+.|..++..+...
T Consensus 139 ~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~---~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~ 215 (260)
T d1rwia_ 139 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL---PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS 215 (260)
T ss_dssp CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC---CCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC
T ss_pred cCCcceeeecCCCCEeeeccccccccccccccceeeee---eccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE
Confidence 34567899999999888888888999999876533221 123334578999999999888888888888887765443
Q ss_pred eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECC
Q 023642 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~ 257 (279)
...... .-.....++++++|.++++-..++.|+.++..
T Consensus 216 ~~~~~~----------------~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 216 TVLPFT----------------GLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp EECCCC----------------SCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred EEEccC----------------CCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence 211100 11256789999999888876667777765543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.71 E-value=0.00054 Score=52.59 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=64.7
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCC---cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC---CCeE
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGFQAS---QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIV 193 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i 193 (279)
+...........|+|+++.++..+.++ .+.+.+...+.... ...........|+|||+.|+..+. ...+
T Consensus 166 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l 240 (269)
T d2hqsa1 166 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-----LSSTFLDETPSLAPNGTMVIYSSSQGMGSVL 240 (269)
T ss_dssp CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-----CCCSSSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred eecccccccccccccccceeEEEeecCCceeeeEeecccccceE-----eecCccccceEECCCCCEEEEEEcCCCCcEE
Confidence 455666778889999999988775544 44555555553321 233445678899999999876553 3468
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecC
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 238 (279)
+++++.++....+... .+.+...+|||-
T Consensus 241 ~~~~~dg~~~~~lt~~-----------------~g~~~~p~WSP~ 268 (269)
T d2hqsa1 241 NLVSTDGRFKARLPAT-----------------DGQVKFPAWSPY 268 (269)
T ss_dssp EEEETTSCCEEECCCS-----------------SSEEEEEEECCC
T ss_pred EEEECCCCCEEEEeCC-----------------CCcEEeEEeCCC
Confidence 8999988776543321 125677888873
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.70 E-value=0.0023 Score=49.67 Aligned_cols=127 Identities=9% Similarity=0.125 Sum_probs=90.6
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~ 202 (279)
.......+++.+++.++++....+.+.+++.... .+... ....+......+++.++++.+++....+.|++||.....
T Consensus 112 ~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~-~~~~~-g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~ 189 (279)
T d1q7fa_ 112 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKF-GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY 189 (279)
T ss_dssp TCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEE-ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE
T ss_pred cccccceeccccCCcEEEEeeccceeeEeccCCc-eeecc-cccccccccceeeeccceeEEeeeccccceeeeecCCce
Confidence 4566788999999998888888888888886643 44332 223455568899999999988888888999999986543
Q ss_pred eeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecC-CCeEEEEECCCCeEEEEEeC
Q 023642 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~-d~~i~vwd~~~~~~~~~~~~ 267 (279)
...+ .. .+.......+++.++|+.+++-.. +..|.+|+. +|+.+.++..
T Consensus 190 ~~~~------------g~---~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~ 239 (279)
T d1q7fa_ 190 LRQI------------GG---EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES 239 (279)
T ss_dssp EEEE------------SC---TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE
T ss_pred eeee------------cc---cccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeC
Confidence 2211 00 112335788999999998877544 457999984 5887777753
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.45 E-value=0.002 Score=52.23 Aligned_cols=79 Identities=13% Similarity=0.061 Sum_probs=53.0
Q ss_pred cceEEEEECCCCCEEEEEeC-CCeEEEEECCCC-ceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec-
Q 023642 170 WTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS- 246 (279)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s- 246 (279)
..+.++.|+|||+++++++. ...|.+|+.... ......... ... .......++|+|++++++...
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~-------~~~-----~g~gPr~i~f~pdg~~~yv~~e 212 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD-------APD-----PGDHPRWVAMHPTGNYLYALME 212 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE-------CSS-----TTCCEEEEEECTTSSEEEEEET
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecccee-------ecC-----CCCceEEEEECCCCceEEEecc
Confidence 35789999999999887764 457888876543 322111110 001 112678899999999886555
Q ss_pred CCCeEEEEECCCCe
Q 023642 247 SDDCIYVYDLEANK 260 (279)
Q Consensus 247 ~d~~i~vwd~~~~~ 260 (279)
.+++|.+|++..++
T Consensus 213 ~~~~V~v~~~~~~~ 226 (365)
T d1jofa_ 213 AGNRICEYVIDPAT 226 (365)
T ss_dssp TTTEEEEEEECTTT
T ss_pred CCCEEEEEEecCCC
Confidence 57899999987643
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.33 E-value=0.014 Score=45.96 Aligned_cols=106 Identities=12% Similarity=0.067 Sum_probs=67.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC----CeEEEEEC
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS----PIVHIVDV 198 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~i~i~d~ 198 (279)
....+..++|.++|+++++-...++|..|+.+++...... .........++++|||+++++...+ +.+...+.
T Consensus 38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~---~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~ 114 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF---VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE 114 (319)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE---ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE---eCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcC
Confidence 3445578999999998888888899999998876443322 2334467899999999988776432 33555555
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~ 245 (279)
.++.......... -......+++.++|++.++.
T Consensus 115 ~~~~~~~~~~~~~--------------~~~~~nd~~~d~~G~l~vtd 147 (319)
T d2dg1a1 115 NGDNLQDIIEDLS--------------TAYCIDDMVFDSKGGFYFTD 147 (319)
T ss_dssp TSCSCEEEECSSS--------------SCCCEEEEEECTTSCEEEEE
T ss_pred CCceeeeeccCCC--------------cccCCcceeEEeccceeecc
Confidence 5544332211100 01145677778888766653
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.20 E-value=0.0032 Score=50.86 Aligned_cols=122 Identities=14% Similarity=0.092 Sum_probs=79.3
Q ss_pred CeEEEEECCCCCEEEEEeCCC-----------cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-CeE
Q 023642 126 RAYVSQFSADGSLFVAGFQAS-----------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIV 193 (279)
Q Consensus 126 ~V~~~~~spd~~~l~s~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~i 193 (279)
++...+...+|+.++.|+.+. .+.+||..++...........+.......++.+++++++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence 444455566888888887431 37799999875432222222333334567889999999988755 589
Q ss_pred EEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCC------CeEEEEECCCCeEE
Q 023642 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEANKLS 262 (279)
Q Consensus 194 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d------~~i~vwd~~~~~~~ 262 (279)
.+||..+............ ..-..++..+||++++.++.+ ..+.+||..+.+..
T Consensus 101 ~~yd~~~~~w~~~~~~~~~---------------r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~ 160 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVA---------------RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 160 (387)
T ss_dssp EEEEGGGTEEEECCCCSSC---------------CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred eEecCccCccccccccccc---------------ccccceeeecCCceeeeccccccccccceeeeecCCCCcee
Confidence 9999998776443322111 122346667899999988753 36899999887643
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.37 E-value=0.056 Score=44.35 Aligned_cols=106 Identities=17% Similarity=0.185 Sum_probs=65.7
Q ss_pred CCCCeEEEEECCCCCEEEEE-eCCC----cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-------
Q 023642 123 TTSRAYVSQFSADGSLFVAG-FQAS----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------- 190 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~-~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------- 190 (279)
+.-.+...++|||+++++.+ +.+| .|+++|+.+++.+...+... ....++|.+|++.|+....+
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~----~~~~~~W~~D~~~~~Y~~~~~~~~~~~ 198 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV----KFSCMAWTHDGKGMFYNAYPQQDGKSD 198 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE----CSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccc----cccceEEcCCCCEEEEEEeccccCccc
Confidence 33334567899999998754 3333 79999999997765433211 12468899999988766533
Q ss_pred ---------CeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEE
Q 023642 191 ---------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (279)
Q Consensus 191 ---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t 244 (279)
..+..+.+.+....... .+.... ....+..+..++++++++.
T Consensus 199 ~~~~~~~~~~~v~~h~lgt~~~~d~~---------v~~e~d---~~~~~~~~~~s~d~~~l~i 249 (430)
T d1qfma1 199 GTETSTNLHQKLYYHVLGTDQSEDIL---------CAEFPD---EPKWMGGAELSDDGRYVLL 249 (430)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGCEE---------EECCTT---CTTCEEEEEECTTSCEEEE
T ss_pred ccccccCCcceEEEEECCCCcccccc---------cccccc---CCceEEeeeccCCcceeeE
Confidence 24666666654432111 111111 2235667788999998764
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.12 E-value=0.14 Score=39.42 Aligned_cols=105 Identities=13% Similarity=0.042 Sum_probs=68.8
Q ss_pred CCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCC--eE---EeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 023642 125 SRAYVSQFSADGSLF-VAGFQASQIRIYDVERG--WK---IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (279)
Q Consensus 125 ~~V~~~~~spd~~~l-~s~~~d~~i~iwd~~~~--~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 198 (279)
..-+.++|+|+++.+ ++-+..+.|..|+++.. .. ........+..+..-.+++.++|++.++.-..+.|..||.
T Consensus 148 ~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp 227 (295)
T d2ghsa1 148 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 227 (295)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred CCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC
Confidence 456789999999866 45566788999987532 11 1111222344556788999999998888778889999996
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEe-cCCCEE-EEec
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS-TDGREL-VAGS 246 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~g~~l-~t~s 246 (279)
. ++......... ..+++++|- ||.+.| +|..
T Consensus 228 ~-G~~~~~i~lP~----------------~~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 228 D-GNHIARYEVPG----------------KQTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp T-CCEEEEEECSC----------------SBEEEEEEESTTSCEEEEEEB
T ss_pred C-CcEeeEecCCC----------------CceEEEEEeCCCCCEEEEEEC
Confidence 5 55433332211 158899996 676554 4433
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.86 E-value=0.19 Score=40.81 Aligned_cols=125 Identities=6% Similarity=0.058 Sum_probs=71.2
Q ss_pred CCCeEEEEECC--CCCEEEEEeCCC------------------cEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCE
Q 023642 124 TSRAYVSQFSA--DGSLFVAGFQAS------------------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 183 (279)
Q Consensus 124 ~~~V~~~~~sp--d~~~l~s~~~d~------------------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 183 (279)
...+-.+...+ .-.+++.++++. .+.++|..+.+...++.... ....++++|||++
T Consensus 131 ~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g----~ld~~~~s~dGK~ 206 (459)
T d1fwxa2 131 AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG----NLDNCDADYEGKW 206 (459)
T ss_dssp CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESS----CCCCEEECSSSSE
T ss_pred CCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeCC----ChhccccCCCCCE
Confidence 44556566554 555777766632 35678999887766644322 4667999999999
Q ss_pred EEEEeCCC---------------eEEEEECCC-------Cce-----eeeeccccc-cce-eEEeeCCCCCccccEEEEE
Q 023642 184 LVYASMSP---------------IVHIVDVGS-------GTM-----ESLANVTEI-HDG-LDFSAADDGGYSFGIFSLK 234 (279)
Q Consensus 184 l~~~~~d~---------------~i~i~d~~~-------~~~-----~~~~~~~~~-~~~-~~~~~~~~~~~~~~v~~~~ 234 (279)
+++.+.+. .+.+++... |+. ......... ... ..+-+... ....+.
T Consensus 207 af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpK-----sPHGV~ 281 (459)
T d1fwxa2 207 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIAN-----NPHGCN 281 (459)
T ss_dssp EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEES-----SCCCEE
T ss_pred EEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCC-----CCCceE
Confidence 88877431 234444311 000 000000000 000 01112111 345678
Q ss_pred EecCCCEEEEec-CCCeEEEEECC
Q 023642 235 FSTDGRELVAGS-SDDCIYVYDLE 257 (279)
Q Consensus 235 ~sp~g~~l~t~s-~d~~i~vwd~~ 257 (279)
++|||++++.++ .+.++.|+|++
T Consensus 282 vSPDGKyi~VaGKLs~tVSViD~~ 305 (459)
T d1fwxa2 282 MAPDKKHLCVAGKLSPTVTVLDVT 305 (459)
T ss_dssp ECTTSSEEEEECTTSSBEEEEEGG
T ss_pred ECCCCCEEEEeCCcCCcEEEEEeh
Confidence 999999988665 58899999985
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.46 E-value=0.35 Score=40.90 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=26.3
Q ss_pred cCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 237 TDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 237 p~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
-.+.+++.|+.|+.++-+|..+|+.+-+++-
T Consensus 467 TagglVF~G~~dg~l~A~Da~tGe~LW~~~l 497 (560)
T d1kv9a2 467 TAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (560)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence 3466777899999999999999999987763
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=95.45 E-value=0.28 Score=41.67 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=26.6
Q ss_pred cCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 237 TDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 237 p~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
-.|.++++|+.|+.++.+|.++|+.+-+++-
T Consensus 486 tagglVF~G~~dg~l~A~Da~TGe~LW~~~~ 516 (573)
T d1kb0a2 486 TAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (573)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EcCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence 3577888899999999999999999987763
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.18 E-value=0.11 Score=42.32 Aligned_cols=95 Identities=19% Similarity=0.310 Sum_probs=56.2
Q ss_pred ceEEEEECCCCCEEEEEe-CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCC
Q 023642 171 TVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (279)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~ 249 (279)
....+.++|||+++++++ .+.++.++|++.-........ ..... ..+... ..-.....+|...|.-..|.--|.
T Consensus 276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~-~~~~~--~~~e~e--lglgPLht~fd~~g~aytslfids 350 (459)
T d1fwxa2 276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA-DPRSA--VVAEPE--LGLGPLHTAFDGRGNAYTSLFLDS 350 (459)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC--GGGG--EEECCB--CCSCEEEEEECTTSEEEEEETTTT
T ss_pred CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccC-Ccccc--EEeecc--cCcCccccccCCCceEEEEeeccc
Confidence 356789999999987655 789999999974222100000 00000 000000 001345678888886555666899
Q ss_pred eEEEEECCC----------CeEEEEEeCCCc
Q 023642 250 CIYVYDLEA----------NKLSLRILAHTV 270 (279)
Q Consensus 250 ~i~vwd~~~----------~~~~~~~~~h~~ 270 (279)
.|.-|++.. ...+.++.-|-+
T Consensus 351 ~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~ 381 (459)
T d1fwxa2 351 QVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ 381 (459)
T ss_dssp EEEEEEHHHHHHHHHTCSCCCEEEEEECSSC
T ss_pred eEEEEecchhhhhhccccCCcceeccccccC
Confidence 999999843 256677765543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.03 E-value=0.63 Score=39.39 Aligned_cols=29 Identities=14% Similarity=0.061 Sum_probs=25.2
Q ss_pred CCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 238 DGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 238 ~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
.+.++++++.|+.++-+|.++|+.+-++.
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~lW~~~ 502 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 46677789999999999999999997775
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.88 E-value=0.35 Score=39.73 Aligned_cols=57 Identities=11% Similarity=0.088 Sum_probs=40.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeee-----ccCCCcceEEEEECCC
Q 023642 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL-----AKSLRWTVTDTSLSPD 180 (279)
Q Consensus 124 ~~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~v~~~~~sp~ 180 (279)
-..-.+|+|.||+++|++--..|+|++++..++........ ...-+.....++|+|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 35667999999999988775679999999877743221111 1122346889999996
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=94.40 E-value=0.23 Score=39.36 Aligned_cols=135 Identities=16% Similarity=0.022 Sum_probs=78.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCC-CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC------CeEEE
Q 023642 123 TTSRAYVSQFSADGSLFVAGFQA-SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIVHI 195 (279)
Q Consensus 123 h~~~V~~~~~spd~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------~~i~i 195 (279)
|.......++.+++..++.|+.+ ..+.+||..+...... ....... .-..++..+||+.++.++.+ ..+.+
T Consensus 74 ~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~-~~~~~~r-~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~ 151 (387)
T d1k3ia3 74 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG-PDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEV 151 (387)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEEC-CCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEE
T ss_pred cccceeEEEEecCCcEEEeecCCCcceeEecCccCccccc-ccccccc-cccceeeecCCceeeeccccccccccceeee
Confidence 43444567889999999998765 5899999988754322 1111222 23567778899999888743 36899
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeE
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~ 261 (279)
||..+.+...+......... ........ ....-..+...++|+.++.+.....+.+++..+...
T Consensus 152 yd~~~~~W~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~ 215 (387)
T d1k3ia3 152 YSPSSKTWTSLPNAKVNPML-TADKQGLY-RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV 215 (387)
T ss_dssp EETTTTEEEEETTSCSGGGC-CCCTTGGG-TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred ecCCCCceeecCCCcccccc-ccccccee-eccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence 99998876443322111110 00000000 000001122345777777777777777777766543
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.99 E-value=0.52 Score=40.01 Aligned_cols=60 Identities=12% Similarity=-0.001 Sum_probs=41.9
Q ss_pred CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecc
Q 023642 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (279)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 209 (279)
|.|.-+|+.+|+.+.+..... ++..=.++-.+.++++++.|+.++.+|.++|+.+.....
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~----p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~ 525 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL----PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS----CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEcCCCCcEEeecCCCC----CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence 568888999987776643222 222212334677888899999999999999998654443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.45 E-value=1.1 Score=33.64 Aligned_cols=137 Identities=9% Similarity=-0.017 Sum_probs=83.4
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEe--CCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEE-eCCCeEEEE
Q 023642 120 VDQTTSRAYVSQFSADGSLFVAGF--QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIV 196 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~i~ 196 (279)
+.........++++|...+|.-.. ..+.|.-.+++....... ....-....++++.+.+..|+.+ ...+.|...
T Consensus 115 ~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l---~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~ 191 (266)
T d1ijqa1 115 FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL---VTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 191 (266)
T ss_dssp EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE---ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecc---cccccceeeEEEeeccccEEEEecCCcCEEEEE
Confidence 445556788999999665554433 345677777765433221 12222357899999988777665 456789989
Q ss_pred ECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEeCCCcceeE
Q 023642 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTVNIAL 274 (279)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (279)
|+.+.....+..... ......++++. .+..+.+-..++.|+..+..+++....+......+..
T Consensus 192 ~~dG~~~~~~~~~~~--------------~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~~~~p~~ 254 (266)
T d1ijqa1 192 DVNGGNRKTILEDEK--------------RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPED 254 (266)
T ss_dssp ETTSCSCEEEEECTT--------------TTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCC
T ss_pred ECCCCCEEEEEeCCC--------------cccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEEEcCCCCceE
Confidence 987655432221111 11245667766 3344444456788999998888877777655444333
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.86 E-value=2.3 Score=35.79 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=27.3
Q ss_pred ecCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 236 STDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 236 sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
+..|..++.|+.|+.++-+|.++|+.+-+++-
T Consensus 494 stagglVF~Gt~dg~l~A~Da~TGe~LW~~~~ 525 (582)
T d1flga_ 494 ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence 34677888899999999999999999988763
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=90.51 E-value=1.3 Score=37.44 Aligned_cols=59 Identities=17% Similarity=0.092 Sum_probs=38.9
Q ss_pred CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeec
Q 023642 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN 208 (279)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 208 (279)
|.|.-+|+.+|+.+.+......-.+.+ ++-.+.++++++.|+.++.+|.++|+.+....
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~----l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~ 502 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGT----LYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBC----EEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcce----eEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 457788888887766543221111111 12246688889999999999999999865443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.86 E-value=2.9 Score=31.11 Aligned_cols=124 Identities=6% Similarity=-0.104 Sum_probs=76.3
Q ss_pred CCCCCeEEEEECCCCCEEEEEeC-CCc--EEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEE-eCCCeEEEEE
Q 023642 122 QTTSRAYVSQFSADGSLFVAGFQ-ASQ--IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVD 197 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~i~d 197 (279)
........++++|...++.-... .+. |.--+++..... . + ....-....++++.+.++.|+.+ ...+.|...|
T Consensus 119 ~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~-~-i-~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~ 195 (263)
T d1npea_ 119 TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-I-L-AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (263)
T ss_dssp SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-E-E-ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce-e-e-eeecccccceEEEeecCcEEEEEeCCCCEEEEEE
Confidence 33467899999997776654432 223 444455543221 1 1 12222356899999887777655 4677899999
Q ss_pred CCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEecCCCeEEEEECCCCeEEEEEe
Q 023642 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (279)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s~d~~i~vwd~~~~~~~~~~~ 266 (279)
+.+.....+.... ....++++. .+....+-...+.|...|..+++.+..+.
T Consensus 196 ~~g~~~~~v~~~~-----------------~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~ 246 (263)
T d1npea_ 196 PAQPGRRKVLEGL-----------------QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (263)
T ss_dssp TTEEEEEEEEECC-----------------CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CCCCCeEEEECCC-----------------CCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence 9765543322110 134577775 34444455567899999999998887764
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.38 E-value=3.6 Score=31.50 Aligned_cols=161 Identities=13% Similarity=0.106 Sum_probs=92.1
Q ss_pred cccceEeeeeecCCCC-ceeeCC----CCCeEEEEECCCCCEEEEEe---C----CCcEEEEEcCCCeEEeeeeeccCCC
Q 023642 102 ADCCHMLSRYLPVNGP-WPVDQT----TSRAYVSQFSADGSLFVAGF---Q----ASQIRIYDVERGWKIQKDILAKSLR 169 (279)
Q Consensus 102 ~d~~~~~~~~~~~~~~-~~l~~h----~~~V~~~~~spd~~~l~s~~---~----d~~i~iwd~~~~~~~~~~~~~~~~~ 169 (279)
.+..+..|++.....+ ..+..| ...|-.-..++++++++..+ . .|.+.+|..+.+... .+.+|.
T Consensus 120 T~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ----~ieGha 195 (327)
T d1utca2 120 TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ----PIEGHA 195 (327)
T ss_dssp CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE----EECCSE
T ss_pred cCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc----ccccee
Confidence 3556677776443333 345555 35677778899999886532 2 357889999887332 245665
Q ss_pred cceEEEEECCC--C-CEEEEEe---CCCeEEEEECCCCce--eeeeccccccceeEEeeCCCCCccccEEEEEEecCCCE
Q 023642 170 WTVTDTSLSPD--Q-RHLVYAS---MSPIVHIVDVGSGTM--ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241 (279)
Q Consensus 170 ~~v~~~~~sp~--~-~~l~~~~---~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 241 (279)
+....+.+.-+ . ..++.+. ..+.++|.++..... ....+ ..-.+.|.++.. ..-.-++..|+.-..
T Consensus 196 a~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~k---k~vdi~fppea~---~DFPvamqvs~kygi 269 (327)
T d1utca2 196 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK---KAVDVFFPPEAQ---NDFPVAMQISEKHDV 269 (327)
T ss_dssp EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCC---EEEECCCCTTCT---TCCEEEEEEETTTTE
T ss_pred eeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcc---eeEEEECCcccc---CCcEEEEEeeccCCE
Confidence 44444333211 1 1333322 235788888865321 11110 001112222211 113457788887778
Q ss_pred EEEecCCCeEEEEECCCCeEEEEEeCCCcce
Q 023642 242 LVAGSSDDCIYVYDLEANKLSLRILAHTVNI 272 (279)
Q Consensus 242 l~t~s~d~~i~vwd~~~~~~~~~~~~h~~~v 272 (279)
+..-+.-|.|++||+.++.++..-+--...|
T Consensus 270 iyviTK~G~i~lyDleTgt~i~~nRIs~~~i 300 (327)
T d1utca2 270 VFLITKYGYIHLYDLETGTCIYMNRISGETI 300 (327)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred EEEEecCcEEEEEEcccccEEEEeecCCCce
Confidence 8888889999999999999887665433333
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=89.34 E-value=2 Score=35.96 Aligned_cols=60 Identities=10% Similarity=-0.002 Sum_probs=41.6
Q ss_pred CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecc
Q 023642 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (279)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 209 (279)
+.|.-||+.+++.+.+........+. .++-.+.+++.++.|+.++.+|..+|+.+.....
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~~~gg----~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l 497 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTHWNGG----TLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCC----EEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cceEEEeCCCCeEeeeccCCCCCCCc----eeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence 46888999999877764332211111 2223567888899999999999999998654443
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=89.13 E-value=0.95 Score=35.47 Aligned_cols=106 Identities=9% Similarity=0.012 Sum_probs=53.6
Q ss_pred EEEEECCCCCEEEEEeC------------CCcEEEEEcCCCeEEeeeeeccCC-----CcceEEEEE--CCCCCE-EEEE
Q 023642 128 YVSQFSADGSLFVAGFQ------------ASQIRIYDVERGWKIQKDILAKSL-----RWTVTDTSL--SPDQRH-LVYA 187 (279)
Q Consensus 128 ~~~~~spd~~~l~s~~~------------d~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~--sp~~~~-l~~~ 187 (279)
-.++..|||..+++++. .|.|.++|+.+...........+. .-....+.+ .++|+. |+..
T Consensus 38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv 117 (340)
T d1v04a_ 38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 117 (340)
T ss_dssp CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence 35777888877766542 489999998765332221111111 012344443 445553 4444
Q ss_pred e---CCCeEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEE
Q 023642 188 S---MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (279)
Q Consensus 188 ~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t 244 (279)
. ...+|-+|++...... + .+...-........+++++..+|.+++|
T Consensus 118 nH~~~~~~ieif~~~~~~~~-l----------~~~~~v~~~~~~~pNDv~~~~~g~fy~T 166 (340)
T d1v04a_ 118 NHPGSSSTVEVFKFQEEEKS-L----------LHLKTIRHKLLPSVNDIVAVGPEHFYAT 166 (340)
T ss_dssp ECSTTCCEEEEEEEETTTTE-E----------EEEEEECCTTCSSEEEEEEEETTEEEEE
T ss_pred eccCCCceeEEEEEeCCCCe-E----------EEEeecCCccccCccceEEecCCCEEEe
Confidence 3 3456777766433211 0 0100000011235678888888888877
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.01 E-value=3.3 Score=30.72 Aligned_cols=129 Identities=9% Similarity=-0.028 Sum_probs=77.7
Q ss_pred eeCCCCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCC-C--eEEE
Q 023642 120 VDQTTSRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P--IVHI 195 (279)
Q Consensus 120 l~~h~~~V~~~~~spd~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~--~i~i 195 (279)
+..-...+.++++..-+..|. +-...+.|.+.+++...+.. . .......+..++++|...+++..... + .|.-
T Consensus 74 ~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~--l-~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r 150 (263)
T d1npea_ 74 IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV--L-FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET 150 (263)
T ss_dssp ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--E-ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred EEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE--E-ecccccCCcEEEEecccCcEEEeecCCCCcEEEE
Confidence 334446789999987566554 55567799999998654321 1 12223458899999987777655432 2 3444
Q ss_pred EECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe-cCCCeEEEEECCCCeEEEEEeC
Q 023642 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~-s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
.++.+.....+... .-.....+++.+.++.|..+ ...+.|...|+........+.+
T Consensus 151 ~~~dG~~~~~i~~~----------------~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~ 207 (263)
T d1npea_ 151 SHMDGTNRRILAQD----------------NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG 207 (263)
T ss_dssp EETTSCCCEEEECT----------------TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC
T ss_pred ecCCCCCceeeeee----------------cccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECC
Confidence 45554433222111 11256788888877766554 4567888888875544444444
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.70 E-value=1.4 Score=35.51 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=38.5
Q ss_pred CCcceEEEEECCCCCEEEEE-eCCC----eEEEEECCCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEE
Q 023642 168 LRWTVTDTSLSPDQRHLVYA-SMSP----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (279)
Q Consensus 168 ~~~~v~~~~~sp~~~~l~~~-~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 242 (279)
+...+..++++||+++++.+ +.+| .++++|+.+++....... . .....++|++|++.|
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~----------~-------~~~~~~~W~~D~~~~ 185 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE----------R-------VKFSCMAWTHDGKGM 185 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE----------E-------ECSCCEEECTTSSEE
T ss_pred ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc----------c-------ccccceEEcCCCCEE
Confidence 33345667889999998743 3333 699999999986432110 0 012457888888877
Q ss_pred EE
Q 023642 243 VA 244 (279)
Q Consensus 243 ~t 244 (279)
+.
T Consensus 186 ~Y 187 (430)
T d1qfma1 186 FY 187 (430)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=87.13 E-value=2 Score=36.15 Aligned_cols=60 Identities=7% Similarity=-0.085 Sum_probs=42.2
Q ss_pred CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecc
Q 023642 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (279)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 209 (279)
|.|.-||+.+++.+..........+.. ++-.+.++++++.|+.++.+|.++|+.+.....
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~----lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~ 516 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGT----LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCE----EEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCce----EEEcCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence 468899999998777643322211212 223677888999999999999999998654433
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.37 E-value=6.4 Score=31.04 Aligned_cols=103 Identities=13% Similarity=0.091 Sum_probs=65.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee
Q 023642 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (279)
Q Consensus 125 ~~V~~~~~spd~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~ 204 (279)
..|..++|+-| .|+.. .++.+..++...-...... .....++.++.+.|. .++....++.+.++++..+...
T Consensus 87 p~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~---~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~ 158 (381)
T d1xipa_ 87 PDVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTV---TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK 158 (381)
T ss_dssp TTEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEE---EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE
T ss_pred CCeEEEEeeCC--EEEEE-eCCCEEEEEeecccccccc---ccccccccceecCCc--eeEEEecCCCEEEEEeccCccc
Confidence 36888999755 45544 3457888887654322221 122346888888774 6677778899999999988754
Q ss_pred eeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEec
Q 023642 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~s 246 (279)
.+.. ......+ ++.+.+++|++.|..++++.
T Consensus 159 ~~~~---~v~~~~~--------~~~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 159 QLAQ---NVTSFDV--------TNSQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp EEEE---SEEEEEE--------CSSEEEEEETTSCEEEEEEE
T ss_pred cccC---CcceEEe--------cCCceEEEEeCCcEEEEEeC
Confidence 3321 1111122 13688999999888888764
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=85.88 E-value=8.8 Score=32.18 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=26.5
Q ss_pred cCCCEEEEecCCCeEEEEECCCCeEEEEEeC
Q 023642 237 TDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (279)
Q Consensus 237 p~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 267 (279)
..|..++.|+.|+.++-+|.++|+.+-+++-
T Consensus 482 TagglVF~G~~Dg~l~A~Da~TGe~LW~~~~ 512 (596)
T d1w6sa_ 482 TAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (596)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ecCCEEEEECCCCeEEEEECCCCcEeeEEEC
Confidence 3567777899999999999999999987763
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.78 E-value=6 Score=29.26 Aligned_cols=119 Identities=8% Similarity=-0.090 Sum_probs=71.9
Q ss_pred CCCCCeEEEEECCCCCEEEE-EeCCCcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeC--CCeEEEEEC
Q 023642 122 QTTSRAYVSQFSADGSLFVA-GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM--SPIVHIVDV 198 (279)
Q Consensus 122 ~h~~~V~~~~~spd~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~~i~i~d~ 198 (279)
.....+..+++.+.+..|.. -...++|.+.+++....... .........+++++|...+|+.... .+.|.-.++
T Consensus 74 ~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~---~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~ 150 (266)
T d1ijqa1 74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL---FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 150 (266)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE---EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred CCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEE---EcCCCCCcceEEEEcccCeEEEeccCCCcceeEecc
Confidence 33456778999886665544 45667899999986643322 1233345789999997666665443 345666666
Q ss_pred CCCceeeeeccccccceeEEeeCCCCCccccEEEEEEecCCCEEEEe-cCCCeEEEEECCCC
Q 023642 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEAN 259 (279)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~t~-s~d~~i~vwd~~~~ 259 (279)
.+.....+... .-.....+++.+.+..|..+ ...+.|...++...
T Consensus 151 dGs~~~~l~~~----------------~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~ 196 (266)
T d1ijqa1 151 NGVDIYSLVTE----------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 196 (266)
T ss_dssp TSCCEEEEECS----------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCceeccccc----------------ccceeeEEEeeccccEEEEecCCcCEEEEEECCCC
Confidence 65544332211 11245677777776655544 44567777777543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=83.98 E-value=0.73 Score=39.24 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=41.3
Q ss_pred CcEEEEEcCCCeEEeeeeeccCCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeecc
Q 023642 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (279)
Q Consensus 146 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 209 (279)
|.|.-||+.+++.+.+........+. .++-.+.+++.|+.|+.++.+|.++|+.+.....
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~~~~gg----~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~ 512 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERFAVWGG----TMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSB----CEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceEEEEeCCCCceecccCCCCCCccc----eeEecCCEEEEECCCCeEEEEECCCCcEeeEEEC
Confidence 46888999999776654322221111 2223577888899999999999999998654443
|