Citrus Sinensis ID: 023709
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 278 | ||||||
| 449495159 | 263 | PREDICTED: uncharacterized LOC101210861 | 0.946 | 1.0 | 0.730 | 1e-111 | |
| 449456933 | 263 | PREDICTED: uncharacterized protein LOC10 | 0.946 | 1.0 | 0.730 | 1e-110 | |
| 225426574 | 266 | PREDICTED: uncharacterized protein LOC10 | 0.942 | 0.984 | 0.748 | 1e-109 | |
| 357462337 | 266 | hypothetical protein MTR_3g080840 [Medic | 0.938 | 0.981 | 0.734 | 1e-108 | |
| 356547509 | 266 | PREDICTED: uncharacterized protein LOC10 | 0.942 | 0.984 | 0.741 | 1e-108 | |
| 388491274 | 266 | unknown [Medicago truncatula] | 0.938 | 0.981 | 0.731 | 1e-107 | |
| 224057988 | 237 | predicted protein [Populus trichocarpa] | 0.838 | 0.983 | 0.795 | 1e-107 | |
| 356499600 | 270 | PREDICTED: uncharacterized protein LOC10 | 0.942 | 0.970 | 0.727 | 1e-106 | |
| 255555763 | 277 | conserved hypothetical protein [Ricinus | 0.895 | 0.898 | 0.713 | 1e-105 | |
| 18408106 | 250 | uncharacterized protein [Arabidopsis tha | 0.892 | 0.992 | 0.689 | 1e-101 |
| >gi|449495159|ref|XP_004159751.1| PREDICTED: uncharacterized LOC101210861 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/278 (73%), Positives = 223/278 (80%), Gaps = 15/278 (5%)
Query: 1 MVVLSLQVVRFPTPPYQISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAFMT 60
MVVL LQ ++F T P + R+ + RCGIAE SGEPAPLGQKTKYNDG FEK FMT
Sbjct: 1 MVVLKLQSIQFFTAPPKEIRNRKIKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60
Query: 61 LFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLLS 120
LFARKMEKFA+ AK + + K+ W+DF YDYE FVDVSKRVM+G++R QQQ VVREVLLS
Sbjct: 61 LFARKMEKFAN-AKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKNRMQQQIVVREVLLS 119
Query: 121 MLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVHIKKC 180
MLPPGAPAQFRKLFPPTKWA EFNA +TVPFF WLVGPSEVVEVE+NG KQRSGVHIKKC
Sbjct: 120 MLPPGAPAQFRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKC 179
Query: 181 SKAEMLIAIFDNRLRYLENSGCVGMCVNMCKFPTQDFFTREFGLPLTMIPNFEDMSCEMV 240
RYLENSGCVGMCVNMCK PTQDFFT EFGLPLTM PNFEDMSCEM+
Sbjct: 180 --------------RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMI 225
Query: 241 YGQVPPSFEDDPVSTQPCFTDICSNANPSSPVCPKLQA 278
YGQVPP FE+DPVS QPC+ DICS A S+P+CPKL A
Sbjct: 226 YGQVPPPFEEDPVSEQPCYKDICSMAITSAPLCPKLLA 263
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456933|ref|XP_004146203.1| PREDICTED: uncharacterized protein LOC101210861 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|225426574|ref|XP_002279815.1| PREDICTED: uncharacterized protein LOC100256431 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|357462337|ref|XP_003601450.1| hypothetical protein MTR_3g080840 [Medicago truncatula] gi|357517075|ref|XP_003628826.1| hypothetical protein MTR_8g067370 [Medicago truncatula] gi|355490498|gb|AES71701.1| hypothetical protein MTR_3g080840 [Medicago truncatula] gi|355522848|gb|AET03302.1| hypothetical protein MTR_8g067370 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|356547509|ref|XP_003542154.1| PREDICTED: uncharacterized protein LOC100780474 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|388491274|gb|AFK33703.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|224057988|ref|XP_002299424.1| predicted protein [Populus trichocarpa] gi|222846682|gb|EEE84229.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356499600|ref|XP_003518626.1| PREDICTED: uncharacterized protein LOC100815863 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|255555763|ref|XP_002518917.1| conserved hypothetical protein [Ricinus communis] gi|223541904|gb|EEF43450.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|18408106|ref|NP_564838.1| uncharacterized protein [Arabidopsis thaliana] gi|6633822|gb|AAF19681.1|AC009519_15 F1N19.25 [Arabidopsis thaliana] gi|33589794|gb|AAQ22663.1| At1g64680 [Arabidopsis thaliana] gi|110740704|dbj|BAE98453.1| hypothetical protein [Arabidopsis thaliana] gi|332196152|gb|AEE34273.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 278 | ||||||
| TAIR|locus:2010856 | 250 | AT1G64680 "AT1G64680" [Arabido | 0.683 | 0.76 | 0.674 | 2.8e-73 | |
| TAIR|locus:505006097 | 264 | D27 "AT1G03055" [Arabidopsis t | 0.579 | 0.609 | 0.392 | 8.8e-31 | |
| TAIR|locus:504955232 | 258 | AT4G01995 "AT4G01995" [Arabido | 0.600 | 0.647 | 0.354 | 2.1e-22 |
| TAIR|locus:2010856 AT1G64680 "AT1G64680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
Identities = 139/206 (67%), Positives = 158/206 (76%)
Query: 73 AKSKTETKKKRWFDFGYDYESFVDVSKRVMEGXXXXXXXXXXXXXXXXMLPPGAPAQFRK 132
+K K +TK+K +++ YDYESFV+VSKRVM+G MLPPGAP QFRK
Sbjct: 61 SKKKKDTKEKGFWE--YDYESFVEVSKRVMQGRSRVQQQEAVREVLLSMLPPGAPEQFRK 118
Query: 133 LFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVHIKKCSKAEMLIAIFDN 192
LFPPTKWAAEFNAALTVPFFHWLVGPS+V+EVE+NG KQRSGV IKKC
Sbjct: 119 LFPPTKWAAEFNAALTVPFFHWLVGPSQVIEVEVNGVKQRSGVRIKKC------------ 166
Query: 193 RLRYLENSGCVGMCVNMCKFPTQDFFTREFGLPLTMIPNFEDMSCEMVYGQVPPSFEDDP 252
RYLENSGCVGMCVNMCK PTQDFFT EFGLPLTM PN+EDMSCEM+YGQ PP+FE+D
Sbjct: 167 --RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNYEDMSCEMIYGQAPPAFEEDV 224
Query: 253 VSTQPCFTDICSNANPSSPVCPKLQA 278
+ QPC DICS +NPSSP+CPKL+A
Sbjct: 225 ATKQPCLADICSMSNPSSPICPKLEA 250
|
|
| TAIR|locus:505006097 D27 "AT1G03055" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:504955232 AT4G01995 "AT4G01995" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00000511001 | SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (266 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 278 | |||
| pfam13225 | 85 | pfam13225, DUF4033, Domain of unknown function (DU | 6e-46 |
| >gnl|CDD|221990 pfam13225, DUF4033, Domain of unknown function (DUF4033) | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 6e-46
Identities = 59/99 (59%), Positives = 65/99 (65%), Gaps = 15/99 (15%)
Query: 154 WLVGPSEVVEVEIN-GEKQRSGVHIKKCSKAEMLIAIFDNRLRYLENSGCVGMCVNMCKF 212
WLVGP EV EVE G ++SGV IKKC RYLE SGC GMCVN CK
Sbjct: 1 WLVGPCEVNEVENGLGRGEKSGVLIKKC--------------RYLEESGCAGMCVNTCKL 46
Query: 213 PTQDFFTREFGLPLTMIPNFEDMSCEMVYGQVPPSFEDD 251
PTQ FF EFGLPLTM PNFED SC+M++GQ PP E+D
Sbjct: 47 PTQTFFKEEFGLPLTMEPNFEDYSCQMIFGQTPPPIEED 85
|
This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is approximately 80 amino acids in length. Length = 85 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 278 | |||
| PF13225 | 86 | DUF4033: Domain of unknown function (DUF4033) | 100.0 |
| >PF13225 DUF4033: Domain of unknown function (DUF4033) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-53 Score=331.38 Aligned_cols=84 Identities=74% Similarity=1.380 Sum_probs=82.9
Q ss_pred ccccceeeEEEe--ecCeeeeccEEEeecchhhHHHHhhccccceecccCccccccccccCCchhhhhhhcCCceeeccC
Q 023709 154 WLVGPSEVVEVE--INGEKQRSGVHIKKCSKAEMLIAIFDNRLRYLENSGCVGMCVNMCKFPTQDFFTREFGLPLTMIPN 231 (278)
Q Consensus 154 WLvGP~ev~eve--v~G~~q~sgV~I~KC~~~~~~~~~~~~~~RyLEeSgC~GmCvN~CK~PTQ~FF~~~~GlpLtM~PN 231 (278)
||||||+|+++| .+|.+++|||||||| ||||+|||+|||+|+||+|||+||+++|||||||+||
T Consensus 1 WLvGp~~v~~~e~~~~~~~~~sgV~i~kC--------------RyLEes~C~g~C~N~CK~PtQ~Ff~~~~Glpl~M~PN 66 (86)
T PF13225_consen 1 WLVGPCEVNEVEENGNGRGQKSGVHIEKC--------------RYLEESGCAGMCVNMCKIPTQTFFKEEFGLPLTMEPN 66 (86)
T ss_pred CcccccEeeEeeccCCCccccceEEEEEe--------------EEeecCCceeeeehhcccchHHHHHhccCCceEecCC
Confidence 999999999999 789999999999999 9999999999999999999999999999999999999
Q ss_pred CccceeeEeecCCCCCCCCC
Q 023709 232 FEDMSCEMVYGQVPPSFEDD 251 (278)
Q Consensus 232 FeD~SCem~FG~~PPp~eeD 251 (278)
||||||||+||++|||+|||
T Consensus 67 fed~SC~~~FG~~Ppp~eeD 86 (86)
T PF13225_consen 67 FEDFSCQMIFGQTPPPIEED 86 (86)
T ss_pred CcCcEEEEEcCCCCCCCCCC
Confidence 99999999999999999998
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00