Citrus Sinensis ID: 023717

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28

MPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQESN

ccccHHHHHHHHHHHHHHHccccccEEEEEccEEEEcccHHHHHHHHHccccccccccccHHHHHHccccccccHHHHHHHHHHccccEEEEcccccccccccccccccccHHHHccccEEEEEccccccccHHHHHHHHHHccEEEEEEcccccccEEEcccccccccccccHHHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc

ccccHHHHHHHHHHHHHHHcccccEEEEEEccEEEEcccHHHHHHHHHccccEEEEcHcHHHHHHHcccccHHHHHHHHHHHHHcccEEEEEcccccccccccccEcccHcHHHHHcccEEEEEccHHHHHcHHHHHHHHHHcccEEEEEcccccccEEEccccccccEccccHHHHHHHHHHHHHcccccEEEEEccccHHHcccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc

mpypqnfeTAKEVEAIVRNNGAVPATIAILeglpcvglsTEELERLAKLGSKAQKTARRDIAHVVAtrgngattVSATMFFASMVGIpvfvtggiggvhrhgehtmdissdltelgrtpvAVVSAGIKSILDIPRTLEYLETHGVCVAayktnefpafftetsgskvpcrvdspedcARLIDVNMKLklgsglvigvpiprehaasgRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQESN

mpypqnfeTAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLgskaqktarrdIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFtetsgskvpcrvDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQESN

************VEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKL*******ARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAI**********NITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALA********

MPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLG********RDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQESN

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		278	2.2.26 [Sep-21-2011]
C0ZIY1		308	Pseudouridine-5'-phosphat	yes	no	0.982	0.886	0.546	2e-79
Q8NYD0		307	Pseudouridine-5'-phosphat	yes	no	0.974	0.882	0.551	5e-77
B1HV79		304	Pseudouridine-5'-phosphat	yes	no	0.978	0.894	0.553	1e-76
Q7MZE1		312	Pseudouridine-5'-phosphat	yes	no	0.956	0.852	0.548	1e-73
A7GCK7		307	Pseudouridine-5'-phosphat	yes	no	0.985	0.892	0.510	4e-73
Q1M4T3		309	Pseudouridine-5'-phosphat	yes	no	0.974	0.877	0.550	7e-73
A6TL60		307	Pseudouridine-5'-phosphat	yes	no	0.974	0.882	0.529	2e-71
Q2SM69		303	Pseudouridine-5'-phosphat	yes	no	0.928	0.851	0.531	2e-71
Q01RY8		299	Pseudouridine-5'-phosphat	yes	no	0.960	0.892	0.525	3e-71
Q8RCT3		307	Pseudouridine-5'-phosphat	yes	no	0.985	0.892	0.545	6e-71

>sp\|C0ZIY1\|PSUG_BREBN Pseudouridine-5'-phosphate glycosidase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=psuG PE=3 SV=1	Back alignment and function desciption

 Score =  295 bits (756), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 152/278 (54%), Positives = 193/278 (69%), Gaps = 5/278 (1%)

Query: 1   MPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRD 60
           MPYPQN E AKEVE I+R+NGAVPATI I++G   +GL+  ELE  A       K +RRD
Sbjct: 33  MPYPQNIEMAKEVEQIIRDNGAVPATIGIMDGKIKIGLTDSELEEFAT-NKNVAKVSRRD 91

Query: 61  IAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPV 120
            A+++A+   GATTV+ATM  A M GI +F TGGIGGVHR GE T D+S+DLTEL +T V
Sbjct: 92  FAYILASGKIGATTVAATMIAAEMAGIHMFATGGIGGVHREGEITWDVSADLTELAQTDV 151

Query: 121 AVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARL 180
           AVV AG KSILDI RTLEYLET GV V  Y+T+EFP+FF   SG  V  R+D+PE+  ++
Sbjct: 152 AVVCAGAKSILDIGRTLEYLETQGVPVVGYRTDEFPSFFARKSGFGVDMRIDTPEEVGKM 211

Query: 181 IDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVN 240
           ++    L L  G++I  P+P   A +   IE+ IQ AL EA+E NI G   TPF+L +V 
Sbjct: 212 MNTKWDLGLKGGMIIANPVPESDALNHEEIEAVIQKALAEAKENNIAGKQVTPFMLDKVK 271

Query: 241 ELTGGLSLASNIALVKNNALIGAKISVALAQLRQQESN 278
           +LT G SLA+NIALVK+NA + AKI+VA     Q+E+N
Sbjct: 272 KLTEGKSLATNIALVKHNAEVAAKIAVAY----QKEAN 305

Catalyzes the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil.
Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) (taxid: 358681)
EC: 3EC: .EC: 2EC: .EC: -EC: .EC: -

>sp\|Q8NYD0\|PSUG_STAAW Pseudouridine-5'-phosphate glycosidase OS=Staphylococcus aureus (strain MW2) GN=psuG PE=3 SV=1	Back alignment and function description

>sp\|B1HV79\|PSUG_LYSSC Pseudouridine-5'-phosphate glycosidase OS=Lysinibacillus sphaericus (strain C3-41) GN=psuG PE=3 SV=1	Back alignment and function description

>sp\|Q7MZE1\|PSUG2_PHOLL Pseudouridine-5'-phosphate glycosidase 2 OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=psuG2 PE=3 SV=1	Back alignment and function description

>sp\|A7GCK7\|PSUG_CLOBL Pseudouridine-5'-phosphate glycosidase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=psuG PE=3 SV=1	Back alignment and function description

>sp\|Q1M4T3\|PSUG2_RHIL3 Pseudouridine-5'-phosphate glycosidase 2 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=psuG2 PE=3 SV=1	Back alignment and function description

>sp\|A6TL60\|PSUG_ALKMQ Pseudouridine-5'-phosphate glycosidase OS=Alkaliphilus metalliredigens (strain QYMF) GN=psuG PE=3 SV=1	Back alignment and function description

>sp\|Q2SM69\|PSUG_HAHCH Pseudouridine-5'-phosphate glycosidase OS=Hahella chejuensis (strain KCTC 2396) GN=psuG PE=3 SV=1	Back alignment and function description

>sp\|Q01RY8\|PSUG_SOLUE Pseudouridine-5'-phosphate glycosidase OS=Solibacter usitatus (strain Ellin6076) GN=psuG PE=3 SV=1	Back alignment and function description

>sp\|Q8RCT3\|PSUG_THETN Pseudouridine-5'-phosphate glycosidase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=psuG PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		278
225435907		346	PREDICTED: pseudouridine-5'-phosphate gl	0.989	0.794	0.858	1e-137
224059266		350	predicted protein [Populus trichocarpa]	0.996	0.791	0.844	1e-135
356532275		485	PREDICTED: pseudouridine-5'-phosphate gl	0.989	0.567	0.825	1e-130
449442563		343	PREDICTED: pseudouridine-5'-phosphate gl	0.989	0.801	0.818	1e-129
357470285		350	Pseudouridine-5'-phosphate glycosidase [	0.971	0.771	0.814	1e-125
297847396		330	indigoidine synthase A family protein [A	0.978	0.824	0.783	1e-123
30694792		330	indigoidine synthase A-like protein [Ara	0.978	0.824	0.768	1e-121
9454556		324	Unknown protein [Arabidopsis thaliana]	0.978	0.839	0.768	1e-121
413938302		315	putative enzyme [Zea mays]	0.992	0.876	0.739	1e-118
224032195		315	unknown [Zea mays]	0.992	0.876	0.735	1e-117

>gi\|225435907\|ref\|XP_002266954.1\| PREDICTED: pseudouridine-5'-phosphate glycosidase [Vitis vinifera] gi\|296083913\|emb\|CBI24301.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/275 (85%), Positives = 259/275 (94%)

Query: 1   MPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRD 60
           MPYP+N ETAKEVEAIVR NGAVPAT+AIL+G+PC+GLS E+LERLA LG+KAQK ARRD
Sbjct: 62  MPYPRNLETAKEVEAIVRTNGAVPATVAILDGIPCIGLSIEQLERLASLGTKAQKAARRD 121

Query: 61  IAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPV 120
           IAH+VATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGE+TMDISSDLTELGRTPV
Sbjct: 122 IAHIVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGENTMDISSDLTELGRTPV 181

Query: 121 AVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARL 180
           AV+SAG+KSILDIPRTLEYLET GVCVAAYKTNEFPAFFTE SGSKV CRVD+PEDCA+L
Sbjct: 182 AVISAGVKSILDIPRTLEYLETQGVCVAAYKTNEFPAFFTEKSGSKVHCRVDTPEDCAQL 241

Query: 181 IDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVN 240
           ID N+KLKLG+G++I VPIP+EHAASG +IESAIQ AL+EAR+KNI GNAETPFLLARV+
Sbjct: 242 IDANIKLKLGTGILIAVPIPKEHAASGSLIESAIQLALKEARDKNIIGNAETPFLLARVS 301

Query: 241 ELTGGLSLASNIALVKNNALIGAKISVALAQLRQQ 275
           ELTGG SLASNIALVKNNA IGAKISVALAQLR+ 
Sbjct: 302 ELTGGASLASNIALVKNNAAIGAKISVALAQLRES 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224059266\|ref\|XP_002299797.1\| predicted protein [Populus trichocarpa] gi\|222847055\|gb\|EEE84602.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356532275\|ref\|XP_003534699.1\| PREDICTED: pseudouridine-5'-phosphate glycosidase-like [Glycine max]	Back alignment and taxonomy information

>gi\|449442563\|ref\|XP_004139051.1\| PREDICTED: pseudouridine-5'-phosphate glycosidase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357470285\|ref\|XP_003605427.1\| Pseudouridine-5'-phosphate glycosidase [Medicago truncatula] gi\|355506482\|gb\|AES87624.1\| Pseudouridine-5'-phosphate glycosidase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297847396\|ref\|XP_002891579.1\| indigoidine synthase A family protein [Arabidopsis lyrata subsp. lyrata] gi\|297337421\|gb\|EFH67838.1\| indigoidine synthase A family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|30694792\|ref\|NP_564574.2\| indigoidine synthase A-like protein [Arabidopsis thaliana] gi\|27754328\|gb\|AAO22617.1\| unknown protein [Arabidopsis thaliana] gi\|28393889\|gb\|AAO42352.1\| unknown protein [Arabidopsis thaliana] gi\|332194438\|gb\|AEE32559.1\| indigoidine synthase A-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|9454556\|gb\|AAF87879.1\|AC012561_12 Unknown protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|413938302\|gb\|AFW72853.1\| putative enzyme [Zea mays]	Back alignment and taxonomy information

>gi\|224032195\|gb\|ACN35173.1\| unknown [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		278
TAIR\|locus:2008081		330	AT1G50510 [Arabidopsis thalian	0.978	0.824	0.768	3.4e-109
ZFIN\|ZDB-GENE-060421-6632		700	zgc:136858 "zgc:136858" [Danio	0.989	0.392	0.584	5.4e-79
UNIPROTKB\|F1P1N5		677	Gga.26687 "Uncharacterized pro	0.982	0.403	0.596	3.8e-78
DICTYBASE\|DDB_G0268118		765	DDB_G0268118 "indigoidine synt	0.949	0.345	0.556	2.9e-71
UNIPROTKB\|Q3AFY5		304	psuG "Pseudouridine-5'-phospha	0.978	0.894	0.555	4.3e-70
TIGR_CMR\|CHY_0077		304	CHY_0077 "indigoidine systhesi	0.978	0.894	0.555	4.3e-70
FB\|FBgn0031265		700	CG2794 [Drosophila melanogaste	0.978	0.388	0.549	1.3e-68
UNIPROTKB\|Q71X89		303	psuG "Pseudouridine-5'-phospha	0.960	0.881	0.548	1.7e-68
UNIPROTKB\|P33025		312	psuG [Escherichia coli K-12 (t	0.956	0.852	0.533	5.2e-65
WB\|WBGene00020765		651	T24C12.3 [Caenorhabditis elega	0.978	0.417	0.485	1.8e-62

TAIR\|locus:2008081 AT1G50510 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
 Identities = 209/272 (76%), Positives = 240/272 (88%)

Query:     1 MPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRD 60
             MPYPQN +TAKEVE+IVR NGA+PATIAIL G+PC+GLS EELERLA LG   QKTA RD
Sbjct:    58 MPYPQNLQTAKEVESIVRENGAIPATIAILNGVPCIGLSEEELERLASLGKSVQKTAGRD 117

Query:    61 IAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPV 120
             IA+VVATRGNGATTVSAT+FFASMVGI VFVTGGIGGVHRH  H+MDISSDLT LGRTP+
Sbjct:   118 IANVVATRGNGATTVSATLFFASMVGIQVFVTGGIGGVHRHANHSMDISSDLTALGRTPI 177

Query:   121 AVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARL 180
             AV+SAG+KSILDIP+TLEYLET  V VAAYK++EFPAFFTE SG K P RV+SPEDCAR+
Sbjct:   178 AVISAGVKSILDIPKTLEYLETQEVYVAAYKSDEFPAFFTEKSGCKAPSRVNSPEDCARV 237

Query:   181 IDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVN 240
             ID NMKL   +G++  +PIP+ H+A+G +IESA Q AL EARE+N+TGNAETPFLLARVN
Sbjct:   238 IDANMKLNRQAGILFAIPIPKHHSAAGNLIESATQRALTEAREQNVTGNAETPFLLARVN 297

Query:   241 ELTGGLSLASNIALVKNNALIGAKISVALAQL 272
             ELTGG SLA+NIALVKNNALIG++I+VAL+QL
Sbjct:   298 ELTGGTSLAANIALVKNNALIGSQIAVALSQL 329

GO:0009507 "chloroplast" evidence=ISM

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

ZFIN\|ZDB-GENE-060421-6632 zgc:136858 "zgc:136858" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P1N5 Gga.26687 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0268118 DDB_G0268118 "indigoidine synthase A like protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3AFY5 psuG "Pseudouridine-5'-phosphate glycosidase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_0077 CHY_0077 "indigoidine systhesis protein, homolog" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

FB\|FBgn0031265 CG2794 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|Q71X89 psuG "Pseudouridine-5'-phosphate glycosidase" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]	Back alignment and assigned GO terms

UNIPROTKB\|P33025 psuG [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

WB\|WBGene00020765 T24C12.3 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A7HMA1	PSUG_FERNB	3, ., 2, ., -, ., -	0.4485	0.9604	0.9020	yes	no
A7GCK7	PSUG_CLOBL	3, ., 2, ., -, ., -	0.5109	0.9856	0.8925	yes	no
P33025	PSUG_ECOLI	3, ., 2, ., -, ., -	0.5338	0.9568	0.8525	N/A	no
B5Y6G9	PSUG_COPPD	3, ., 2, ., -, ., -	0.4646	0.9640	0.8874	yes	no
A5IXG3	PSUG_MYCAP	3, ., 2, ., -, ., -	0.4688	0.9748	0.9003	yes	no
C0QZV6	PSUG_BRAHW	3, ., 2, ., -, ., -	0.4744	0.9820	0.8863	yes	no
A5UT22	PSUG_ROSS1	3, ., 2, ., -, ., -	0.4816	0.9640	0.8617	yes	no
A9BJN0	PSUG_PETMO	3, ., 2, ., -, ., -	0.5150	0.9532	0.8660	yes	no
Q01RY8	PSUG_SOLUE	3, ., 2, ., -, ., -	0.5259	0.9604	0.8929	yes	no
Q46PS3	PSUG_CUPPJ	3, ., 2, ., -, ., -	0.5366	0.9280	0.8216	yes	no
Q28PY7	PSUG_JANSC	3, ., 2, ., -, ., -	0.5130	0.9640	0.8874	yes	no
C1AA54	PSUG_GEMAT	3, ., 2, ., -, ., -	0.4141	0.9532	0.8660	yes	no
A6TL60	PSUG_ALKMQ	3, ., 2, ., -, ., -	0.5294	0.9748	0.8827	yes	no
B8II14	PSUG_METNO	3, ., 2, ., -, ., -	0.5271	0.9244	0.7626	yes	no
B8F668	PSUG_HAEPS	3, ., 2, ., -, ., -	0.5018	0.9568	0.8807	yes	no
Q7MZE1	PSUG2_PHOLL	3, ., 2, ., -, ., -	0.5488	0.9568	0.8525	yes	no
C0ZIY1	PSUG_BREBN	3, ., 2, ., -, ., -	0.5467	0.9820	0.8863	yes	no
B1HV79	PSUG_LYSSC	3, ., 2, ., -, ., -	0.5531	0.9784	0.8947	yes	no
B7ID34	PSUG_THEAB	3, ., 2, ., -, ., -	0.4464	0.9532	0.9044	yes	no
A4F929	PSUG_SACEN	3, ., 2, ., -, ., -	0.4185	0.9676	0.8877	yes	no
Q1D739	PSUG_MYXXD	3, ., 2, ., -, ., -	0.4354	0.9748	0.8943	yes	no
Q67N11	PSUG_SYMTH	3, ., 2, ., -, ., -	0.5091	0.9640	0.8701	yes	no
B9LGZ1	PSUG_CHLSY	3, ., 2, ., -, ., -	0.4836	0.9784	0.8918	yes	no
Q165S4	PSUG_ROSDO	3, ., 2, ., -, ., -	0.4758	0.9640	0.8645	yes	no
A8LQI0	PSUG_DINSH	3, ., 2, ., -, ., -	0.5018	0.9640	0.8786	yes	no
A1SQN1	PSUG_NOCSJ	3, ., 2, ., -, ., -	0.5128	0.9784	0.8859	yes	no
Q9RS16	PSUG_DEIRA	3, ., 2, ., -, ., -	0.5116	0.9244	0.8210	yes	no
Q5ZU79	PSUG_LEGPH	3, ., 2, ., -, ., -	0.5018	0.9640	0.8701	yes	no
A9GT78	PSUG_SORC5	3, ., 2, ., -, ., -	0.5542	0.9244	0.8107	yes	no
Q98NQ8	PSUG_RHILO	3, ., 2, ., -, ., -	0.4869	0.9640	0.8786	yes	no
A8F8N4	PSUG_THELT	3, ., 2, ., -, ., -	0.3809	0.9676	0.9471	yes	no
A8GCG3	PSUG_SERP5	3, ., 2, ., -, ., -	0.4391	0.9712	0.8766	yes	no
C5CDZ1	PSUG_KOSOT	3, ., 2, ., -, ., -	0.4464	0.9640	0.9273	yes	no
Q8NYD0	PSUG_STAAW	3, ., 2, ., -, ., -	0.5514	0.9748	0.8827	yes	no
Q5L078	PSUG_GEOKA	3, ., 2, ., -, ., -	0.5429	0.9172	0.8471	yes	no
A9NGD7	PSUG_ACHLI	3, ., 2, ., -, ., -	0.4926	0.9748	0.8943	yes	no
A9B4S4	PSUG_HERA2	3, ., 2, ., -, ., -	0.4862	0.9136	0.8382	yes	no
A1B316	PSUG_PARDP	3, ., 2, ., -, ., -	0.4942	0.9280	0.8486	yes	no
Q72JF9	PSUG_THET2	3, ., 2, ., -, ., -	0.4224	0.8992	0.8896	yes	no
C6CFY1	PSUG_DICZE	3, ., 2, ., -, ., -	0.3992	0.9964	0.8765	yes	no
B6IRJ4	PSUG_RHOCS	3, ., 2, ., -, ., -	0.5342	0.9892	0.8593	yes	no
Q1M4T3	PSUG2_RHIL3	3, ., 2, ., -, ., -	0.5507	0.9748	0.8770	yes	no
Q8RCT3	PSUG_THETN	3, ., 2, ., -, ., -	0.5454	0.9856	0.8925	yes	no
Q2SM69	PSUG_HAHCH	3, ., 2, ., -, ., -	0.5310	0.9280	0.8514	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00017290001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (329 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00035982001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (378 aa)	•	•	•	0.750
	GSVIVG00036740001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (456 aa)	•			0.587
	GSVIVG00022056001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (174 aa)	•			0.569
	GSVIVG00034124001	RecName- Full=50S ribosomal protein L34; (147 aa)	•			0.424

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		278
pfam04227		293	pfam04227, Indigoidine_A, Indigoidine synthase A l	1e-162
COG2313		310	COG2313, IndA, Uncharacterized enzyme involved in	1e-119

>gnl\|CDD\|217974 pfam04227, Indigoidine_A, Indigoidine synthase A like protein	Back alignment and domain information

 Score =  451 bits (1163), Expect = e-162
 Identities = 168/269 (62%), Positives = 198/269 (73%)

Query: 1   MPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRD 60
           MPYPQN ETA+EVE IVR NGAVPATIAI++G   VGLS EELERLA+ G    K +RRD
Sbjct: 25  MPYPQNVETAREVEQIVRENGAVPATIAIIDGRIKVGLSDEELERLAQAGKDVAKVSRRD 84

Query: 61  IAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPV 120
           + +V+AT   GATTV+ATM  A + GI VF TGGIGGVHR  E + DIS+DLTEL RTPV
Sbjct: 85  LPYVLATGKTGATTVAATMILAHLAGIKVFATGGIGGVHRGAEESFDISADLTELARTPV 144

Query: 121 AVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARL 180
           AVV AG KSILDIP+TLEYLET GV V  Y T+EFPAF++  SG K P R+DS E+ A  
Sbjct: 145 AVVCAGAKSILDIPKTLEYLETQGVPVIGYGTDEFPAFYSRDSGFKAPYRLDSAEEIAAA 204

Query: 181 IDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVN 240
           I     L L  G+++  PIP E+A     IE+AI+ AL EA E+ ITG A TPFLLAR+ 
Sbjct: 205 IRARWALGLQGGVLVANPIPEEYAIDREEIEAAIEQALAEAEEQGITGKAVTPFLLARIA 264

Query: 241 ELTGGLSLASNIALVKNNALIGAKISVAL 269
           ELTGG SL +NIALVKNNA + A+I+VAL
Sbjct: 265 ELTGGRSLKANIALVKNNARLAAEIAVAL 293

Indigoidine is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown. The recommended name for this protein is now pseudouridine-5'-phosphate glycosidase. Length = 293

>gnl\|CDD\|225195 COG2313, IndA, Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		278
PF04227		293	Indigoidine_A: Indigoidine synthase A like protein	100.0
COG2313		310	IndA Uncharacterized enzyme involved in pigment bi	100.0
KOG3009		614	consensus Predicted carbohydrate kinase, contains	100.0
TIGR02643		437	T_phosphoryl thymidine phosphorylase. Thymidine ph	91.88
PRK05820		440	deoA thymidine phosphorylase; Reviewed	89.48
TIGR02644		405	Y_phosphoryl pyrimidine-nucleoside phosphorylase.	88.92
PRK00188		339	trpD anthranilate phosphoribosyltransferase; Provi	85.69
TIGR02645		493	ARCH_P_rylase putative thymidine phosphorylase. Me	85.5
PRK06078		434	pyrimidine-nucleoside phosphorylase; Reviewed	85.19
TIGR01245		330	trpD anthranilate phosphoribosyltransferase. In ma	85.05
PRK04350		490	thymidine phosphorylase; Provisional	82.93
cd03109		134	DTBS Dethiobiotin synthetase (DTBS) is the penulti	82.12
PF07302		221	AroM: AroM protein; InterPro: IPR010843 This famil	80.54

>PF04227 Indigoidine_A: Indigoidine synthase A like protein; InterPro: IPR007342 Members of this entry catalyze the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil	Back alignment and domain information

Probab=100.00  E-value=1.9e-122  Score=857.90  Aligned_cols=269  Identities=65%  Similarity=0.931  Sum_probs=208.9

Q ss_pred             CCCchhHHHHHHHHHHHHHCCCcccEEEEEcCceeecCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHH
Q 023717            1 MPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMF   80 (278)
Q Consensus         1 lPyP~Nle~A~~~E~~vR~~GavPATIaii~G~i~VGl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~   80 (278)
                      ||||+|+|||+++|++||++||+||||||+||+|+|||+++||++|++.++++.|+|||||++++++|++||||||+||+
T Consensus        25 lPyP~Nle~a~~~E~~vr~~GavPATIai~~G~i~vGl~~~ele~la~~~~~~~K~s~RDl~~~~a~~~~GaTTVsaTm~  104 (293)
T PF04227_consen   25 LPYPQNLETAREVEEIVRSQGAVPATIAIIDGKIKVGLSEEELERLADAGKGVIKVSRRDLAYALAKGLSGATTVSATMI  104 (293)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHT-EEEEEEEETTEEEES--HHHHHHHHHH----EEE-GGGHHHHHHHT--EEE-HHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHhcCCCccEEEEECCeeEEcCCHHHHHHHHHhccCCeeecHhhHHHHHhCCCccHhHHHHHHH
Confidence            89999999999999999999999999999999999999999999999876789999999999999999999999999999


Q ss_pred             HHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceee
Q 023717           81 FASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFT  160 (278)
Q Consensus        81 lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~  160 (278)
                      +||++||+||+||||||||||+++|||||+||+||+||||+|||||+|||||||+|||||||+||||+||+||+||+||+
T Consensus       105 lA~~aGI~VfaTGGiGGVHrga~~t~DiSaDL~eL~rtpv~VV~aG~KsILDi~~TLE~LET~GV~Vvgy~t~~fPaFy~  184 (293)
T PF04227_consen  105 LAHLAGIKVFATGGIGGVHRGAEETFDISADLTELARTPVAVVCAGAKSILDIPKTLEYLETQGVPVVGYGTDEFPAFYT  184 (293)
T ss_dssp             HHHHTT--EEE-S-B--B-TT---SS-B-HHHHHHTTS-EEEEESBB-TTS-HHHHHHHHHHTT--EEEES-SB--BTTB
T ss_pred             HHHHcCCCEEEeCCcccCCCCCcCcchhhhHHHHHhcCCceEEEccCcchhchHHHHHHhhcCCeEEEEecCCCCCeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHH
Q 023717          161 ETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVN  240 (278)
Q Consensus       161 ~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi~Gk~vTPflL~~i~  240 (278)
                      ++||+++|||+||++|+|++++++|+||+++|+||+||||+|+++|+++|+++|++|++||+++||+||++|||||++|+
T Consensus       185 ~~Sg~~~~~~~d~~~e~A~~~~~~~~lgl~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPfLL~~i~  264 (293)
T PF04227_consen  185 RSSGFKSPYRVDSPEEAARIIRAHWQLGLPSGVLVANPIPEEDAIDGEEIESAIEQALAEAEEQGIRGKAVTPFLLARIN  264 (293)
T ss_dssp             S--S-B---EE-SHHHHHHHHHHHHHTT--SEEEEE----GGG---HHHHHHHHHT-----------GGGHHHHHHHHHH
T ss_pred             cCCCCCCCcccCCHHHHHHHHHHHHHhCCCCeEEEEccCChHhcCCHHHHHHHHHHHHhhHhhcCCCcccCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCccHHHHHHHHHHHHHHHHHHHHHH
Q 023717          241 ELTGGLSLASNIALVKNNALIGAKISVAL  269 (278)
Q Consensus       241 elT~G~Sl~aNiaLl~nNa~laa~IA~~~  269 (278)
                      |+|+|+|+++|++||+|||++|+|||++|
T Consensus       265 e~T~G~Sl~aNialv~nNa~~aa~IA~~l  293 (293)
T PF04227_consen  265 ELTGGKSLEANIALVKNNARLAAQIAVAL  293 (293)
T ss_dssp             HHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCccHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999987

It is also reported to be involved in the synthesis of indigoidine, which is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 1VKM_C.

>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]	Back alignment and domain information

>TIGR02643 T_phosphoryl thymidine phosphorylase	Back alignment and domain information

>PRK05820 deoA thymidine phosphorylase; Reviewed	Back alignment and domain information

>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase	Back alignment and domain information

>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional	Back alignment and domain information

>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase	Back alignment and domain information

>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed	Back alignment and domain information

>TIGR01245 trpD anthranilate phosphoribosyltransferase	Back alignment and domain information

>PRK04350 thymidine phosphorylase; Provisional	Back alignment and domain information

>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms	Back alignment and domain information

>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		278
4gij_A		335	Crystal Structure Of Pseudouridine Monophosphate Gl		4e-71
4gim_A		335	Crystal Structure Of Pseudouridine Monophosphate Gl		2e-70
4ex8_A		316	Crystal Structure Of The Prealnumycin C-glycosyntha		2e-35
1vkm_A		297	Crystal Structure Of An Indigoidine Synthase A (Idg		3e-31

>pdb|4GIJ|A Chain A, Crystal Structure Of Pseudouridine Monophosphate Glycosidase Complexed With Sulfate Length = 335

Back alignment and structure

Iteration: 1

Score = 264 bits (674), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 142/266 (53%), Positives = 174/266 (65%) Query: 1 MPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRD 60 MP+PQN +TA EVE +R GAVPATIAI+ G+ VGLS EE+E L + G K +RRD Sbjct: 62 MPFPQNAQTAIEVEETIRKQGAVPATIAIIGGVMKVGLSKEEIELLGREGHNVTKVSRRD 121 Query: 61 IAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPV 120 + VVA NGATTV++TM A++ GI VF TGGIGGVHR EHT DIS+DL EL T V Sbjct: 122 LPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQELANTNV 181 Query: 121 AVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARL 180 VV AG KSILD+ T EYLET GV + Y+T PAFF TS V R+DS + AR Sbjct: 182 TVVCAGAKSILDLGLTTEYLETFGVPLIGYQTKALPAFFCRTSPFDVSIRLDSASEIARA 241 Query: 181 IDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVN 240 + V + L GLV+ PIP + A I +AI A+ EA + + G TPFLLARV Sbjct: 242 MVVKWQSGLNGGLVVANPIPEQFAMPEHTINAAIDQAVAEAEAQGVIGKESTPFLLARVA 301 Query: 241 ELTGGLSLASNIALVKNNALIGAKIS 266 ELTGG SL SNI LV NNA++ ++I+ Sbjct: 302 ELTGGDSLKSNIQLVFNNAILASEIA 327

PyMOL of 4gij

>pdb|4GIM|A Chain A, Crystal Structure Of Pseudouridine Monophosphate Glycosidase Complexed With Pseudouridine 5'-Phosphate Length = 335

Back alignment and structure

>pdb|4EX8|A Chain A, Crystal Structure Of The Prealnumycin C-glycosynthase Alna Length = 316

Back alignment and structure

>pdb|1VKM|A Chain A, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A Resolution Length = 297

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		278
1vkm_A		297	Conserved hypothetical protein TM1464; indigoidine	1e-90

>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1 Length = 297	Back alignment and structure

 Score =  269 bits (689), Expect = 1e-90
 Identities = 103/271 (38%), Positives = 156/271 (57%), Gaps = 11/271 (4%)

Query: 1   MPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRD 60
           +P  +  E  +  + I R  G   A I IL+G    G+S EELE + + G  A K   R+
Sbjct: 37  LPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGMSEEELEAMMREG--ADKVGTRE 94

Query: 61  IAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPV 120
           I  VVA   N ATTVSAT+F +  +GI V VTGG GGVH      +D+S DLTE+  +  
Sbjct: 95  IPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVHPG---RVDVSQDLTEMSSSRA 151

Query: 121 AVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARL 180
            +VS+GIKSILD+  T E LET  + +  ++TNEFP FF+  SG +VP R+++ E+  ++
Sbjct: 152 VLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEFPLFFSRKSGRRVP-RIENVEEVLKI 210

Query: 181 IDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVN 240
            +   +++L   L++  P+P E+      IE  +     E  E  + G   TPFLL ++ 
Sbjct: 211 YESMKEMELEKTLMVLNPVPEEYEIPHDEIERLL-----EKIELEVEGKEVTPFLLKKLV 265

Query: 241 ELTGGLSLASNIALVKNNALIGAKISVALAQ 271
           E+T G +L +N+AL++ N  +  +I+V L +
Sbjct: 266 EMTNGRTLKANLALLEENVKLAGEIAVKLKR 296

PyMOL of 1vkm

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		278
4gim_A		335	Pseudouridine-5'-phosphate glycosidase; alpha-beta	100.0
4ex8_A		316	ALNA; alpha/beta/alpha-domain, C-glycosynthase, di	100.0
1vkm_A		297	Conserved hypothetical protein TM1464; indigoidine	100.0
3h5q_A		436	PYNP, pyrimidine-nucleoside phosphorylase; structu	87.43
1vqu_A		374	Anthranilate phosphoribosyltransferase 2; 17130499	85.06
2dsj_A		423	Pyrimidine-nucleoside (thymidine) phosphorylase; p	84.93
2qjg_A		273	Putative aldolase MJ0400; beta-alpha barrel, lyase	84.12
1khd_A		345	Anthranilate phosphoribosyltransferase; type 3 PRT	81.3

>4gim_A Pseudouridine-5'-phosphate glycosidase; alpha-beta-alpha sandwich fold, hydrolase; HET: PSU; 1.80A {Escherichia coli} PDB: 4gij_A 4gik_A* 4gil_A*	Back alignment and structure

Probab=100.00  E-value=1.4e-126  Score=894.43  Aligned_cols=273  Identities=52%  Similarity=0.756  Sum_probs=269.9

Q ss_pred             CCCchhHHHHHHHHHHHHHCCCcccEEEEEcCceeecCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHH
Q 023717            1 MPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMF   80 (278)
Q Consensus         1 lPyP~Nle~A~~~E~~vR~~GavPATIaii~G~i~VGl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~   80 (278)
                      ||||+|+|+|+++|++||++|||||||||+||+++|||+++|||+||+.++++.|+|||||++++++|++||||||+||+
T Consensus        62 mPyP~Nle~A~~vE~ivR~~GavPATIaiidG~~~vGL~~~ele~la~~~~~v~K~SrRDl~~~~a~~~~GaTTVaaTm~  141 (335)
T 4gim_A           62 MPFPQNAQTAIEVEETIRKQGAVPATIAIIGGVMKVGLSKEEIELLGREGHNVTKVSRRDLPFVVAAGKNGATTVASTMI  141 (335)
T ss_dssp             SCTTHHHHHHHHHHHHHHHTTCEEEEEEEETTEEEESCCHHHHHHHHHHGGGSEEECTTTHHHHHHTTCCEEECHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHCCCCCceEEEECCEeEEcCCHHHHHHHHhcCCCceeeecccHHHHhhcCCCccccHHHHHH
Confidence            89999999999999999999999999999999999999999999999765679999999999999999999999999999


Q ss_pred             HHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceee
Q 023717           81 FASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFT  160 (278)
Q Consensus        81 lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~  160 (278)
                      +|++|||+||+||||||||||+++|||||+||+||+||||+|||||+|||||||+|||||||+||||+||+||+||+||+
T Consensus       142 lA~~AGI~VFaTGGIGGVHRgae~t~DISADL~eLarTpV~VVcAG~KSILDi~~TLE~LET~GVpVvgy~td~fPaFy~  221 (335)
T 4gim_A          142 IAALAGIKVFATGGIGGVHRGAEHTFDISADLQELANTNVTVVCAGAASILDLGLTTEYLETFGVPLIGYQTKALPAFFC  221 (335)
T ss_dssp             HHHHTTCCEEECSCCCCBBTTHHHHCCBCHHHHHHHHSCCEEEECBCCTTBCHHHHHHHHHHTTCCEEEETCSBCCBTTB
T ss_pred             HHHHCCCcEEeeCCcCccCCCCCCCccccchHHHhccCCeEEEeecchhhccchhHHHHHHhcCceEEEecCCCCceeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHH
Q 023717          161 ETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVN  240 (278)
Q Consensus       161 ~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi~Gk~vTPflL~~i~  240 (278)
                      |+||+++|||+|+++|+|++++++|+||+++|+||+||||+++++|+++|+.+|++|++||+++||+||++|||||++|+
T Consensus       222 r~Sg~~~~~rvd~~~e~A~i~~~~~~lgl~~g~lvanPIP~e~~i~~~~i~~~I~~Al~eA~~~gI~Gk~vTPfLL~~i~  301 (335)
T 4gim_A          222 RTSPFDVSIRLDSASEIARAMVVKWQSGLNGGLVVANPIPEQFAMPEHTINAAIDQAVAEAEAQGVIGKESTPFLLARVA  301 (335)
T ss_dssp             SCCSSBCSEEECCHHHHHHHHHHHHHTTCCSCEEEECCCCGGGCCCHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHH
T ss_pred             cCCCCcCcceeCCHHHHHHHHHHHHHcCCCCceEEeCCCCchhcCCHHHHHHHHHHHHHHHHHcCCcCCccChHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023717          241 ELTGGLSLASNIALVKNNALIGAKISVALAQLR  273 (278)
Q Consensus       241 elT~G~Sl~aNiaLl~nNa~laa~IA~~~~~~~  273 (278)
                      |+|+|+||++|++||+|||++|++||++|++|.
T Consensus       302 elT~G~Sl~aNiaLv~nNA~laa~IA~~l~~L~  334 (335)
T 4gim_A          302 ELTGGDSLKSNIQLVFNNAILASEIAKEYQRLA  334 (335)
T ss_dssp             HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999974

PyMOL of 4gim

>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*	Back alignment and structure

>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1	Back alignment and structure

>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}	Back alignment and structure

>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}	Back alignment and structure

>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}	Back alignment and structure

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A	Back alignment and structure

>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		278
d1vkma_		292	c.138.1.1 (A:) Hypothetical protein TM1464 {Thermo	1e-105

>d1vkma_ c.138.1.1 (A:) Hypothetical protein TM1464 {Thermotoga maritima [TaxId: 2336]} Length = 292	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Indigoidine synthase A-like
superfamily: Indigoidine synthase A-like
family: Indigoidine synthase A-like
domain: Hypothetical protein TM1464
species: Thermotoga maritima [TaxId: 2336]

 Score =  305 bits (783), Expect = e-105
 Identities = 102/270 (37%), Positives = 154/270 (57%), Gaps = 11/270 (4%)

Query: 1   MPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRD 60
           +P  +  E  +  + I R  G   A I IL+G    G+S EELE + +    A K   R+
Sbjct: 33  LPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGMSEEELEAMMR--EGADKVGTRE 90

Query: 61  IAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPV 120
           I  VVA   N ATTVSAT+F +  +GI V VTGG GGVH      +D+S DLTE+  +  
Sbjct: 91  IPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVH---PGRVDVSQDLTEMSSSRA 147

Query: 121 AVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARL 180
            +VS+GIKSILD+  T E LET  + +  ++TNEFP FF+  SG +VP R+++ E+  ++
Sbjct: 148 VLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEFPLFFSRKSGRRVP-RIENVEEVLKI 206

Query: 181 IDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVN 240
            +   +++L   L++  P+P E+      IE  +     E  E  + G   TPFLL ++ 
Sbjct: 207 YESMKEMELEKTLMVLNPVPEEYEIPHDEIERLL-----EKIELEVEGKEVTPFLLKKLV 261

Query: 241 ELTGGLSLASNIALVKNNALIGAKISVALA 270
           E+T G +L +N+AL++ N  +  +I+V L 
Sbjct: 262 EMTNGRTLKANLALLEENVKLAGEIAVKLK 291

PyMOL of d1vkma_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		278
d1vkma_		292	Hypothetical protein TM1464 {Thermotoga maritima [	100.0
d2elca2		264	Anthranilate phosphoribosyltransferase (TrpD) {The	82.7

>d1vkma_ c.138.1.1 (A:) Hypothetical protein TM1464 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Indigoidine synthase A-like
superfamily: Indigoidine synthase A-like
family: Indigoidine synthase A-like
domain: Hypothetical protein TM1464
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.9e-116  Score=813.00  Aligned_cols=260  Identities=39%  Similarity=0.623  Sum_probs=252.9

Q ss_pred             CCCchhHHHHHHHHHHHHHCCCcccEEEEEcCceeecCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHH
Q 023717            1 MPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMF   80 (278)
Q Consensus         1 lPyP~Nle~A~~~E~~vR~~GavPATIaii~G~i~VGl~~~el~~la~~~~~~~K~srRDl~~~~a~~~~GaTTVaaTm~   80 (278)
                      ||||+|+|+|+++|++||++||+||||||+||+|+|||+++|||+|++.  ++.|+|||||++++++|++||||||+||+
T Consensus        33 lP~P~N~~~a~~~e~~vr~~Ga~PAtiai~~G~~~vGl~~~ele~la~~--~~~K~s~rdl~~~~a~~~~gaTTVsaTm~  110 (292)
T d1vkma_          33 LPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGMSEEELEAMMRE--GADKVGTREIPIVVAEGKNAATTVSATIF  110 (292)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEEEESCCHHHHHHHHHH--CCEEECGGGHHHHHHHTCCEEECHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHCCCcceeEEEECCeeeecCCHHHHHHHhhc--cccccccccHHHHHhccccccccHHHHHH
Confidence            8999999999999999999999999999999999999999999999974  68999999999999999999999999999


Q ss_pred             HHHHCCCcEEEecccccccCCCccccccccchhhhcCCCeEEEecccccccchhhhHhHhhhCCeeEEeecCCCCcceee
Q 023717           81 FASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFT  160 (278)
Q Consensus        81 lA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~t~~fPaFy~  160 (278)
                      +|+++||+||||||||||||+   +||||+||+||+||||+|||||+|||||||+|||||||+||||+||+||+||+||+
T Consensus       111 iA~~aGI~VFaTGGIGGVHr~---s~DiSaDL~eL~~tpv~vVcaG~KsiLDi~~TlE~LET~gV~Vvgy~t~~fPaF~~  187 (292)
T d1vkma_         111 LSRRIGIEVVVTGGTGGVHPG---RVDVSQDLTEMSSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEFPLFFS  187 (292)
T ss_dssp             HHHHHTCCEEECSCBCCBCTT---SSCBCHHHHHHTTCCEEEEESBBCTTSCHHHHHHHHHHTTCCEEEESCSBCCBTTB
T ss_pred             HHHhCCCeEEEecCcccccCC---CccccccHhhHhcCCeEEEecccHhhcccHHHHHHHHhcCeeEEeecCCcccceee
Confidence            999999999999999999995   89999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccCcccCCHHHHHHHHHHHHhcCCCCeEEEEeCCCccCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHH
Q 023717          161 ETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVN  240 (278)
Q Consensus       161 ~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~i~~Al~ea~~~gi~Gk~vTPflL~~i~  240 (278)
                      ++||+++| ++|+++|+|++++++|+|++++|+||+||||+++++|.++||++|+++     ++||+||++|||||++|+
T Consensus       188 ~~Sg~~~~-~v~~~~eiA~i~~~~~~lgl~~giLvanPIP~e~~i~~~~ie~~i~~a-----~~~I~GK~vTPFLL~~I~  261 (292)
T d1vkma_         188 RKSGRRVP-RIENVEEVLKIYESMKEMELEKTLMVLNPVPEEYEIPHDEIERLLEKI-----ELEVEGKEVTPFLLKKLV  261 (292)
T ss_dssp             SCCSCBCC-EECSHHHHHHHHHHHHHTTCCSEEEEECCCCGGGCCCHHHHHHHHHTC-----CCCCCGGGHHHHHHHHHH
T ss_pred             cCCCCCCC-CcCCHHHHHHHHHHHHHcCCCceEEEECCCCchhhCCHHHHHHHHHHH-----HhCCcCcccCHHHHHHHH
Confidence            99999999 599999999999999999999999999999999999999998887654     789999999999999999


Q ss_pred             HHhCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 023717          241 ELTGGLSLASNIALVKNNALIGAKISVALAQ  271 (278)
Q Consensus       241 elT~G~Sl~aNiaLl~nNa~laa~IA~~~~~  271 (278)
                      |+|+|+||++|++|++|||++|+|||++|++
T Consensus       262 e~T~G~SL~aNiaLi~nNA~lAa~IA~~l~k  292 (292)
T d1vkma_         262 EMTNGRTLKANLALLEENVKLAGEIAVKLKR  292 (292)
T ss_dssp             HHTTTHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHcCCccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999975

PyMOL of d1vkma_

>d2elca2 c.27.1.1 (A:66-329) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure