Citrus Sinensis ID: 023719

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MSKTMSSTSTESSDGDQATVELIVCNSSPSAADGGGTASDEISPLLAQSEKPKTNIFSVSYTRRKPREHVIETDTSLTNCMLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYYAKNGFHAYVNSQVFSGETRFICAYVAIDTSKIGTY
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccHcccccccccccccEEEEEEEccccccHcccccccccHHHHHHccccccEEEEEEEcccccccccEEccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccc
Coil and Loop (DISEMBL)
msktmsststessdgdqaTVELIVcnsspsaadgggtasdeispllaqsekpktnifsvsytrrkprehvietdtSLTNCMLWVwngsrysgLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRrsgqpifgpmHARNLLVLRALVGFLSLFSFVYSIqrlplsqatvlsfTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYYAKNGFHAYVNSQVFSGETRFICAYVAidtskigty
Flexible Loop (DISEMBL)
msktmsststessdgdqATVELIVCNSSPSAADGGGTASDEISpllaqsekpktnifsvsytrrkprehvietdtsltncMLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYYAKNGFHAYVNSQVFSGETRFICAYVAIDTSKIGTY
Low Complexity Region (SEG)
msktmsststessDGDQATVELIVCNSSPSAADGGGTASDEISPLLAQSEKPKTNIFSVSYTRRKPREHVIETDTSLTNCMLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYYAKNGFHAYVNSQVFSGETRFICAYVAIDTSKIGTY
Disordered region (IsUnstruct)
********************************************************FSVSYT*****EHVIETDTSLTNCMLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYYAKNGFHAYVNSQVFSGETRFICAYVAIDT******
Disordered Region (DISOPRED)
*********************************************************************************LWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYYAKNGFHAYVNSQVFSGETRFICAYVAIDTSKIGTY
Disordered Region (DISEMBL)
****************QATVELIVCNSSP*********SDEISPLLAQSEKPKTNIFSVSYTRRKPREHVIETDTSLTNCMLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYYAKNGFHAYVNSQVFSGETRFICAYVAIDTSKIGTY
Disordered Region (DISPRO)
**************GDQATVELIVCNSS************EISPLLAQSEKPKTNIFSVSYTRRKPREHVIETDTSLTNCMLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYYAKNGFHAYVNSQVFSGETRFICAYVAIDTSKI***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSKTMSSTSTESSDGDQATVELIVCNSSPSAADGGGTASDEISPLLAQSEKPKTNIFSVSYTRRKPREHVIETDTSLTNCMLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYYAKNGFHAYVNSQVFSGETRFICAYVAIDTSKIGTY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	278	2.2.26 [Sep-21-2011]
Q2M3R5	365	Solute carrier family 35	yes	no	0.557	0.424	0.285	1e-07
Q04835	414	Uncharacterized membrane	yes	no	0.417	0.280	0.308	1e-07
Q08980	353	Probable transport protei	no	no	0.410	0.322	0.254	8e-06
Q8BY79	368	Solute carrier family 35	yes	no	0.392	0.296	0.318	2e-05

>sp|Q2M3R5|S35G1_HUMAN Solute carrier family 35 member G1 OS=Homo sapiens GN=SLC35G1 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 104 FFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVG 163
            F++ + DV  V+ I  F  VF    V   L Y   R++G    GP   R  L+LR ++G
Sbjct: 87  LFVKKVQDVHAVE-ISAFRCVFQMLVVIPCLIY---RKTG--FIGPKGQRIFLILRGVLG 140

Query: 164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223
             ++    Y+ Q + L+ ATV++F++P+  SI A I L+EK    +      +  GV+ I
Sbjct: 141 STAMMLIYYAYQTMSLADATVITFSSPVFTSIFAWICLKEKYSPWDALFTVFTITGVILI 200

Query: 224 FRRILTTQGREVSLQKLFYYAKNGFHAYVNSQVFSGETRFI 264
            R           +++ +     G  A + S VF+  T  I
Sbjct: 201 VRPPFLFGSDTSGMEESYSGHLKGTFAAIGSAVFAASTLVI 241

Homo sapiens (taxid: 9606)

>sp|Q04835|YM87_YEAST Uncharacterized membrane protein YMR253C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR253C PE=1 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 4/120 (3%)

Query: 110 SDVFMVQSIPLFETVFMRCTVTLI--LSYLWLRRS--GQPIFGPMHARNLLVLRALVGFL 165
            D+   + I   + + +R  +T I  L Y+++ +S      FG    R  LVLR   GF 
Sbjct: 96  DDIANDRQIKPLQILLVRMVITYIGTLIYMYINKSTISDVPFGKPEVRKWLVLRGCTGFF 155

Query: 166 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225
            +F   YS+  L +S A +++F AP +    + +ILRE+    E  G  +S  GV+ I R
Sbjct: 156 GVFGMYYSLMYLTISDAVLITFLAPSLTIFLSWVILRERFTKVEALGSLISLLGVVLIVR 215

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q08980|YP264_YEAST Probable transport protein YPL264C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL264C PE=1 SV=1

 Score = 51.2 bits (121), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 8/122 (6%)

Query: 121 FETVFMRCTVTLILSYLWLRRSGQPI----FGPMHARNLLVLRALVGFLSLFSFVYSIQR 176
            + + +R ++T   + +++  + Q +    +GP   R  L+LR ++GF  +F   +S+  
Sbjct: 52  LQILLVRMSITYCCTLVYMHWNKQSVPDIPWGPAPCRKWLILRGIMGFFGVFGMYFSLMY 111

Query: 177 LPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRIL----TTQG 232
           L +S A +++F +P +    + ++L E     E  G  +SF GV+ I R        TQG
Sbjct: 112 LSISDAVLITFMSPTLTIFLSFLLLGEPFSKLEALGSLISFSGVVLIIRPTFLFGEQTQG 171

Query: 233 RE 234
           ++
Sbjct: 172 QQ 173

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8BY79|S35G1_MOUSE Solute carrier family 35 member G1 OS=Mus musculus GN=Slc35g1 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 115 VQSIPLFETVFMRCTVTL--ILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVY 172
           VQ +   E    RC V +  I+  L  R++G    GP   R  L LR + G  ++    Y
Sbjct: 95  VQGVHAVEISAFRCVVQMLVIIPCLIYRKTG--FIGPKGQRLFLFLRGVFGSSAMILMYY 152

Query: 173 SIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225
           + Q   L+ ATV++F+ P+  SI A I L+EK  + +      +  GV+ I R
Sbjct: 153 AFQTTSLADATVIAFSCPVFTSIFAWIFLKEKYSLWDAFFTLFAIAGVILIVR 205

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
225447127	390	PREDICTED: uncharacterized protein LOC10	0.805	0.574	0.703	3e-82
224129018	393	predicted protein [Populus trichocarpa]	0.838	0.592	0.629	1e-78
147835022	413	hypothetical protein VITISV_004002 [Viti	0.805	0.542	0.638	3e-78
21554090	401	unknown [Arabidopsis thaliana]	0.877	0.608	0.613	9e-77
255568715	425	Transmembrane protein, putative [Ricinus	0.809	0.529	0.631	1e-76
18396156	401	nodulin MtN21 /EamA-like transporter pro	0.877	0.608	0.597	1e-75
297831648	401	integral membrane family protein [Arabid	0.874	0.605	0.599	4e-75
449444715	392	PREDICTED: uncharacterized protein LOC10	0.827	0.586	0.553	4e-65
357462229	475	Membrane protein, putative [Medicago tru	0.618	0.362	0.518	8e-43
148910334	387	unknown [Picea sitchensis]	0.766	0.550	0.414	1e-41

>gi|225447127|ref|XP_002271163.1| PREDICTED: uncharacterized protein LOC100256852 [Vitis vinifera] gi|297739206|emb|CBI28857.3| unnamed protein product [Vitis vinifera]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 159/226 (70%), Positives = 176/226 (77%), Gaps = 2/226 (0%)

Query: 9   STESSDGDQATVELIVCNSSPSAADGGGTASDEISPLLAQSEKPKTNIFSVSYTRRKPRE 68
           S E+ D D   VELIVC++S S +      S+EI PLLA SEKPK NIFSVSY+RRKPRE
Sbjct: 3   SVETIDSDAPAVELIVCDASSSDSAANSVGSEEIEPLLAVSEKPKINIFSVSYSRRKPRE 62

Query: 69  HVIET--DTSLTNCMLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFM 126
            V ++  D S T  +LW W+GSR SGL+CMALSSTIY  M+ +SD+F  QSIPLFET F 
Sbjct: 63  QVTKSAEDASFTQFILWAWSGSRCSGLLCMALSSTIYCIMEALSDIFSAQSIPLFETAFT 122

Query: 127 RCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLS 186
           RCTVTLILSY WLRRSGQPIFGP H R+LLV RAL+G+LSL SFVY IQRLPLSQA VLS
Sbjct: 123 RCTVTLILSYFWLRRSGQPIFGPTHVRSLLVSRALMGYLSLLSFVYCIQRLPLSQAVVLS 182

Query: 187 FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQG 232
           FT PIMASI ARIIL EKL IAEIGGLA SF GVLFIFR IL  QG
Sbjct: 183 FTTPIMASIMARIILHEKLNIAEIGGLACSFIGVLFIFRPILAAQG 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129018|ref|XP_002320480.1| predicted protein [Populus trichocarpa] gi|222861253|gb|EEE98795.1| predicted protein [Populus trichocarpa]

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 156/248 (62%), Positives = 185/248 (74%), Gaps = 15/248 (6%)

Query: 11  ESSDGDQATVELIVCNSSPS-------AADGGGTASDEISPLLAQSEKPKTNIFSVSYTR 63
           E S+GD   VELIVC++S S       + DG   AS+EI+PLL    KPK NIFSVS++R
Sbjct: 3   EISNGDHDAVELIVCDASASELVPDEISGDGAVLASEEITPLL----KPKINIFSVSHSR 58

Query: 64  RKPREH---VIETDT-SLTNCMLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIP 119
           RKPRE    + + +T  +T  +LW+W GSRYSGL+C+A+SSTIYF M+V+SD F  QSIP
Sbjct: 59  RKPREQGTKIPDIETFPVTQFVLWIWGGSRYSGLLCVAISSTIYFVMEVLSDFFSAQSIP 118

Query: 120 LFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPL 179
           LFET F RCT+TLILSYLWLR +GQPIFGP HAR  L  RAL G LSL SF+Y I+RLPL
Sbjct: 119 LFETAFARCTITLILSYLWLRGNGQPIFGPAHARKFLFSRALTGCLSLLSFIYCIRRLPL 178

Query: 180 SQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQK 239
           SQA VLSFT PIMASI ARIIL EKLKI ++GGLA SFFGVLFIFR+ILTTQG  + + +
Sbjct: 179 SQAIVLSFTTPIMASIVARIILHEKLKIVDVGGLACSFFGVLFIFRQILTTQGALLRVGE 238

Query: 240 LFYYAKNG 247
             Y A  G
Sbjct: 239 TNYIAIMG 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147835022|emb|CAN70194.1| hypothetical protein VITISV_004002 [Vitis vinifera]

 Score =  297 bits (761), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 159/249 (63%), Positives = 176/249 (70%), Gaps = 25/249 (10%)

Query: 9   STESSDGDQATVELIVCNSSPSAADGGGTASDEISPLLAQSEKPKTNIFSVSYTRRKPRE 68
           S E+ D D   VELIVC++S S +      S+EI PLLA SEKPK NIFSVSY+RRKPRE
Sbjct: 3   SXETIDSDAPAVELIVCDASSSDSAANSVGSEEIEPLLAVSEKPKINIFSVSYSRRKPRE 62

Query: 69  HVIET--DTSLTNCMLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFM 126
            V ++  D S T  +LW W+GSR SGL+CMALSSTIY  M+ +SD+F  QSIPLFET F 
Sbjct: 63  QVTKSAEDASFTQFILWAWSGSRCSGLLCMALSSTIYCIMEALSDIFSAQSIPLFETAFT 122

Query: 127 RCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLS 186
           RCTVTLILSY WLRRSGQPIFGP H R+LLV RAL+G+LSL SFVY IQRLPLSQA VLS
Sbjct: 123 RCTVTLILSYFWLRRSGQPIFGPTHVRSLLVSRALMGYLSLLSFVYCIQRLPLSQAVVLS 182

Query: 187 FTAPIMASIAARIILREKLKIAEIG-----------------------GLALSFFGVLFI 223
           FT PIMASI ARIIL EKL IAEIG                       GLA SF GVLFI
Sbjct: 183 FTTPIMASIMARIILHEKLNIAEIGELYTYFCEAGGETDCFVBCIYFPGLACSFIGVLFI 242

Query: 224 FRRILTTQG 232
           FR IL  QG
Sbjct: 243 FRPILAAQG 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554090|gb|AAM63171.1| unknown [Arabidopsis thaliana]

 Score =  292 bits (748), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 157/256 (61%), Positives = 188/256 (73%), Gaps = 12/256 (4%)

Query: 5   MSSTSTESSDGDQA-TVELIVCN-SSP---SAADGGGTASDEISPLLAQSEKPKTNIFSV 59
           M+S+S E+   D+  ++EL V +  SP   SA+     +SDEI PLL Q+++P+ NIFS 
Sbjct: 1   MASSSPETRIADEHLSLELTVRDLESPALESASSAPELSSDEIIPLLNQNQRPRINIFSA 60

Query: 60  SYTRRKPREHVI---ETDTS-LTNCMLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMV 115
           SYTRRKPRE VI   ET+ S LT    W+W+GSRYSGL+CMALSST+Y  M+++SD F V
Sbjct: 61  SYTRRKPREQVIKVTETEISPLTQFSSWIWSGSRYSGLLCMALSSTLYLIMELVSDTFSV 120

Query: 116 QSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQ 175
           Q IPLFET FMRCT+ LILSYLWL+R GQPIFGP HAR LLV RALVG+LSLFSF++SIQ
Sbjct: 121 QPIPLFETAFMRCTIILILSYLWLKRIGQPIFGPAHARKLLVSRALVGYLSLFSFIFSIQ 180

Query: 176 RLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREV 235
            LPLSQA VLSF  PIMASIAAR+++ EKLKI +IGGLA SFFGVLFIF   LT Q   V
Sbjct: 181 MLPLSQAIVLSFLNPIMASIAARVVMHEKLKITDIGGLACSFFGVLFIFGPTLTVQ---V 237

Query: 236 SLQKLFYYAKNGFHAY 251
            L+      K   H Y
Sbjct: 238 GLEGKNENLKENHHIY 253

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568715|ref|XP_002525329.1| Transmembrane protein, putative [Ricinus communis] gi|223535388|gb|EEF37062.1| Transmembrane protein, putative [Ricinus communis]

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/247 (63%), Positives = 184/247 (74%), Gaps = 22/247 (8%)

Query: 7   STSTESSDGDQATVELIVCNSS----------PSAADGG---GTASDEISPLLAQSEKPK 53
           + S E  DGD A VELIVCNSS           S AD G   G+ SDEI+PLL    KPK
Sbjct: 2   AASAEIIDGDHA-VELIVCNSSSSSSSSSSSPDSFADNGNPTGSPSDEITPLL----KPK 56

Query: 54  TNIFSVSYTRRKPREHVI---ETDTS-LTNCMLWVWNGSRYSGLMCMALSSTIYFFMQVI 109
            NIFSVS++RRKPRE V    ET+T      +LWVW+GSRYSG++CMALSS+IYF M+++
Sbjct: 57  INIFSVSHSRRKPREQVAKLPETETPPFIQLILWVWSGSRYSGILCMALSSSIYFVMEIL 116

Query: 110 SDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFS 169
           S  F  +SIPLFET FMRCT+ LILSY+WLRRSGQPIFG +HAR LL LRAL GFLSL S
Sbjct: 117 SHSFSTRSIPLFETAFMRCTIVLILSYIWLRRSGQPIFGAVHARKLLFLRALTGFLSLLS 176

Query: 170 FVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILT 229
           F+Y IQRLP SQA +L+FT PI+ASI AR++L EKLKIA+IGGL  SFFGVLFI+R+IL 
Sbjct: 177 FIYCIQRLPFSQAIILNFTTPIVASILARLMLHEKLKIADIGGLTCSFFGVLFIYRQILR 236

Query: 230 TQGREVS 236
           TQ  E +
Sbjct: 237 TQAGEAN 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396156|ref|NP_565328.1| nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana] gi|20198220|gb|AAM15467.1| Expressed protein [Arabidopsis thaliana] gi|109134115|gb|ABG25056.1| At2g05755 [Arabidopsis thaliana] gi|110738794|dbj|BAF01320.1| hypothetical protein [Arabidopsis thaliana] gi|330250873|gb|AEC05967.1| nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana]

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/256 (59%), Positives = 186/256 (72%), Gaps = 12/256 (4%)

Query: 5   MSSTSTESSDGDQA-TVELIVCNSSPSAADGGGTA----SDEISPLLAQSEKPKTNIFSV 59
           M+S+S E+   D+  ++EL V +   +A +   +A    SDEI PLL Q+++P+ NIFS 
Sbjct: 1   MASSSPETRIADEHLSLELTVRDLESTALESASSAPELSSDEIIPLLNQNQRPRINIFSA 60

Query: 60  SYTRRKPREHVI---ETDTS-LTNCMLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMV 115
           SYTRRKP E VI   ET+ S +T    W+W+GSRYSGL+CMALSST+Y  M+++SD F V
Sbjct: 61  SYTRRKPSEQVIKVTETEISPVTQFSSWIWSGSRYSGLLCMALSSTLYLIMELVSDTFSV 120

Query: 116 QSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQ 175
           Q IPLFET FMRCT+ LILSYLWL+R GQPIFGP HAR LLV RALVG+LSLFSF++SIQ
Sbjct: 121 QPIPLFETAFMRCTIILILSYLWLKRIGQPIFGPAHARKLLVSRALVGYLSLFSFIFSIQ 180

Query: 176 RLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREV 235
            LPLSQA VLSF  PIMASIAAR+++ EKLKI +IGGLA SFFGVLFIF   LT Q   V
Sbjct: 181 MLPLSQAIVLSFLNPIMASIAARVVMHEKLKITDIGGLACSFFGVLFIFGPTLTVQ---V 237

Query: 236 SLQKLFYYAKNGFHAY 251
            L+      K   H Y
Sbjct: 238 GLEGKNENLKGNHHIY 253

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831648|ref|XP_002883706.1| integral membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|297329546|gb|EFH59965.1| integral membrane family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  287 bits (734), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 154/257 (59%), Positives = 187/257 (72%), Gaps = 14/257 (5%)

Query: 5   MSSTSTESSDGDQA-TVELIVCN-SSPSAADGGG---TASDEISPLLAQSEKPKTNIFSV 59
           M+S+S E+   D+   +EL V +  SP+  D      ++SDEI PLL Q+++P+ NIFS 
Sbjct: 1   MASSSPETRITDEHLALELTVRDLESPALEDASSAPESSSDEIIPLLNQNQRPRINIFSA 60

Query: 60  SYTRRKPREHVI---ETDTS-LTNCMLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMV 115
           SYTR KPRE VI   ET+ S +T    W+W+GSRYSGL+CM LSST+Y  M+++SD F V
Sbjct: 61  SYTRHKPREQVIKVTETEISPVTQFSSWIWSGSRYSGLLCMVLSSTLYLIMELVSDTFSV 120

Query: 116 QSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQ 175
           Q IPLFET FMRCT+ LILSYLWL+R GQPIFGP HAR LLV RALVG+LSLFSF++SIQ
Sbjct: 121 QPIPLFETAFMRCTIILILSYLWLKRIGQPIFGPAHARKLLVSRALVGYLSLFSFIFSIQ 180

Query: 176 RLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQ-GRE 234
            LPLSQA VLSF  PIMASIAAR+++ EKLKI +IGGLA SFFGVLFIF   LT Q G E
Sbjct: 181 MLPLSQAIVLSFLNPIMASIAARVVMHEKLKITDIGGLACSFFGVLFIFGPTLTVQVGSE 240

Query: 235 VSLQKLFYYAKNGFHAY 251
            + + L    K   H Y
Sbjct: 241 GTNENL----KGNHHIY 253

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444715|ref|XP_004140119.1| PREDICTED: uncharacterized protein LOC101208388 [Cucumis sativus] gi|449481153|ref|XP_004156097.1| PREDICTED: uncharacterized protein LOC101226055 [Cucumis sativus]

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 130/235 (55%), Positives = 161/235 (68%), Gaps = 5/235 (2%)

Query: 9   STESSDGDQATVELIVCNSSPSAADGGGTASDEISPLLAQSEKPKTNIFSVSYTRRKPRE 68
            ++ + G    VELIV    PS AD     S+EI+PLL Q EKPK NIF++SY RR P E
Sbjct: 2   DSDMNSGVDHLVELIVREEPPSIADDV-PISEEIAPLLTQIEKPKINIFTISYPRRTPME 60

Query: 69  HVIETD----TSLTNCMLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETV 124
            V +      +SL+  ++W+W+GSRYSGL+C +LSS  YF M+V+  VF  QSIP+ E  
Sbjct: 61  QVNKVHDSDVSSLSQSIIWIWSGSRYSGLLCASLSSIFYFAMEVLMGVFSAQSIPIIEMA 120

Query: 125 FMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATV 184
           F RC +  ILSYLWLRRS QPIFG  H R LLV RAL G LS+ SF+YSI+RL +SQA V
Sbjct: 121 FTRCVIITILSYLWLRRSEQPIFGQPHVRKLLVSRALTGLLSMMSFIYSIRRLHISQAIV 180

Query: 185 LSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQK 239
           LSFT PI+AS+AAR IL EK K ++ GGLA SF GVL IF+ + T+QG E  L K
Sbjct: 181 LSFTTPILASVAARFILNEKFKFSDFGGLACSFLGVLLIFQDLFTSQGTEAGLTK 235

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462229|ref|XP_003601396.1| Membrane protein, putative [Medicago truncatula] gi|355490444|gb|AES71647.1| Membrane protein, putative [Medicago truncatula]

 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 98/189 (51%), Positives = 132/189 (69%), Gaps = 17/189 (8%)

Query: 9   STESSDGDQATVELIVCN---------SSPSAADGGGTASDEISPLLAQSEKPKTNIFSV 59
           ++  S+G    VELIV +         SS S+ D    A D+I+PLL+ +++PK NIF+ 
Sbjct: 2   ASPESNGSDHVVELIVRDIPQPPPLPSSSSSSDDSRDNAHDQIAPLLSHTDRPKINIFTA 61

Query: 60  SYTRRK-PREHV---IETDTS-LTNCMLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFM 114
           SY RRK PR+ V   +E++TS  T C+LW+WNGSRYSGL+CMALSS +YF M V+S++F 
Sbjct: 62  SYPRRKQPRDEVTRLLESETSPFTQCILWIWNGSRYSGLLCMALSSFLYFLMGVLSNIFS 121

Query: 115 VQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVY-- 172
           VQ+IPLFET F RCT+ LILSYLWLRRS QP+FG  + R +L+LRAL G +S+ SFV   
Sbjct: 122 VQAIPLFETAFTRCTIILILSYLWLRRSEQPLFGTSNVRIILLLRALAGCISMSSFVRWV 181

Query: 173 -SIQRLPLS 180
             ++R P+ 
Sbjct: 182 GHVERRPVD 190

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148910334|gb|ABR18246.1| unknown [Picea sitchensis]

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 92/222 (41%), Positives = 139/222 (62%), Gaps = 9/222 (4%)

Query: 16  DQATVELIVCNSSPSAADGGGTASDEISPLLAQSEKPKTNIFSVSYTRRKPREH---VIE 72
           D+    L+V + S  A       +D ++P     +  K +IFSVS+   + +E     +E
Sbjct: 8   DEEIRPLMVSSPSTVANSIVEVTTDTLAP-----QCLKMSIFSVSHGTARSKERRNKPME 62

Query: 73  TD-TSLTNCMLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVT 131
            D T+L+  ++W W GSRYSG++CMALSS +Y  M +  ++F   S P +ET+F+RC V 
Sbjct: 63  ADFTALSEFLIWAWGGSRYSGMVCMALSSLMYSIMGLFVELFAATSAPSYETIFIRCAVI 122

Query: 132 LILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPI 191
           L+ +++WLR++GQP+FG  H   LL+ RA+ G+LSL  F YSIQ LPL  A VL+FT P 
Sbjct: 123 LVAAFIWLRKTGQPLFGLPHVWRLLMARAITGYLSLLGFFYSIQVLPLHDAIVLNFTTPF 182

Query: 192 MASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGR 233
           MA+I A  IL+EKL + E+GG+  +F G+  +++ I   QG+
Sbjct: 183 MAAILASFILQEKLGVIELGGIFCNFLGIFLVYQPIPFLQGQ 224

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
TAIR|locus:505006238	401	AT2G05755 [Arabidopsis thalian	0.834	0.578	0.615	7e-70
UNIPROTKB|G4NII1	438	MGG_09833 "Uncharacterized pro	0.442	0.280	0.344	2e-10
UNIPROTKB|Q47WD7	291	CPS_4235 "Membrane protein" [C	0.381	0.364	0.324	2.1e-09
TIGR_CMR|CPS_4235	291	CPS_4235 "membrane protein" [C	0.381	0.364	0.324	2.1e-09
CGD|CAL0006171	460	orf19.2204 [Candida albicans (	0.366	0.221	0.380	4.9e-09
UNIPROTKB|Q5A2K2	460	CaO19.2204 "Putative uncharact	0.366	0.221	0.380	4.9e-09
UNIPROTKB|Q2M3R5	365	SLC35G1 "Solute carrier family	0.600	0.457	0.282	9.3e-09
DICTYBASE|DDB_G0282673	510	DDB_G0282673 "Uncharacterized	0.482	0.262	0.300	1e-08
UNIPROTKB|I3LCX7	366	SLC35G1 "Uncharacterized prote	0.460	0.349	0.297	1.6e-08
SGD|S000004866	414	YMR253C "Putative protein of u	0.410	0.275	0.316	6.3e-08

TAIR|locus:505006238 AT2G05755 [Arabidopsis thaliana (taxid:3702)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 147/239 (61%), Positives = 175/239 (73%)

Query:    17 QATVELIVCNSSPSAADGGGTASDEISPLLAQSEKPKTNIFSVSYTRRKPREHVI---ET 73
             + TV  +   +  SA+     +SDEI PLL Q+++P+ NIFS SYTRRKP E VI   ET
Sbjct:    18 ELTVRDLESTALESASSAPELSSDEIIPLLNQNQRPRINIFSASYTRRKPSEQVIKVTET 77

Query:    74 DTS-LTNCMLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTL 132
             + S +T    W+W+GSRYSGL+CMALSST+Y  M+++SD F VQ IPLFET FMRCT+ L
Sbjct:    78 EISPVTQFSSWIWSGSRYSGLLCMALSSTLYLIMELVSDTFSVQPIPLFETAFMRCTIIL 137

Query:   133 ILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIM 192
             ILSYLWL+R GQPIFGP HAR LLV RALVG+LSLFSF++SIQ LPLSQA VLSF  PIM
Sbjct:   138 ILSYLWLKRIGQPIFGPAHARKLLVSRALVGYLSLFSFIFSIQMLPLSQAIVLSFLNPIM 197

Query:   193 ASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYYAKNGFHAY 251
             ASIAAR+++ EKLKI +IGGLA SFFGVLFIF   LT Q   V L+      K   H Y
Sbjct:   198 ASIAARVVMHEKLKITDIGGLACSFFGVLFIFGPTLTVQ---VGLEGKNENLKGNHHIY 253

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

UNIPROTKB|G4NII1 MGG_09833 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 169 (64.5 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 43/125 (34%), Positives = 57/125 (45%)

Query:   117 SIPLFETVFMRCTVTLILS--YLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSI 174
             S      +F+R   T IL   Y+W +      FG    R LL+LR   GF  L    YS+
Sbjct:   102 SFHALHVIFVRMLATAILGLLYMWWKSVPDAPFGDRRVRGLLLLRGASGFSGLLGLYYSL 161

Query:   175 QRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGRE 234
               LPLS AT +SF  P + +I   + L+E +   E     L+F GVL I R      G  
Sbjct:   162 SYLPLSDATFISFIIPAITAIVCFVFLKEPMSKHETFAGVLAFTGVLLIARPTFLFGGSH 221

Query:   235 VSLQK 239
              SL +
Sbjct:   222 ASLDE 226

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q47WD7 CPS_4235 "Membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 157 (60.3 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 35/108 (32%), Positives = 61/108 (56%)

Query:   118 IPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRL 177
             IP+ E V  R  V+ I+SY  ++R    ++G  H + LL+ R  VG  +L    Y++  L
Sbjct:    38 IPVLEIVAARAIVSGIISYADIKRKKISLWG--HNKALLIARGTVGSFALMFVYYAVTTL 95

Query:   178 PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225
             PL++ATVL +  P+  ++ A   L+E ++ + I  +A+S  G+  I +
Sbjct:    96 PLAEATVLQYLHPVFTAVLAVFFLKETIQRSTIACIAISLLGLFIIIQ 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_4235 CPS_4235 "membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 157 (60.3 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 35/108 (32%), Positives = 61/108 (56%)

Query:   118 IPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRL 177
             IP+ E V  R  V+ I+SY  ++R    ++G  H + LL+ R  VG  +L    Y++  L
Sbjct:    38 IPVLEIVAARAIVSGIISYADIKRKKISLWG--HNKALLIARGTVGSFALMFVYYAVTTL 95

Query:   178 PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225
             PL++ATVL +  P+  ++ A   L+E ++ + I  +A+S  G+  I +
Sbjct:    96 PLAEATVLQYLHPVFTAVLAVFFLKETIQRSTIACIAISLLGLFIIIQ 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

CGD|CAL0006171 orf19.2204 [Candida albicans (taxid:5476)]

 Score = 158 (60.7 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 40/105 (38%), Positives = 57/105 (54%)

Query:   122 ETVFMRCTVTLI--LSYLWLRRSGQPI-FGPMHARNLLVLRALVGFLSLFSFVYSIQRLP 178
             + +F+R  +T I  L Y+ + RS     FGP   R LL+LR LVGF  +F   +S+Q L 
Sbjct:   140 QILFVRMFITYICCLLYMAITRSVPDAPFGPKPIRKLLLLRGLVGFFGVFGMYFSLQYLS 199

Query:   179 LSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223
             LS A  L+F  P++ +  A ++L EK  I E      S  GV+ I
Sbjct:   200 LSDAVALTFLVPMVTAFLAFVLLHEKYSILEAICSVFSLAGVVLI 244

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A2K2 CaO19.2204 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 158 (60.7 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 40/105 (38%), Positives = 57/105 (54%)

Query:   122 ETVFMRCTVTLI--LSYLWLRRSGQPI-FGPMHARNLLVLRALVGFLSLFSFVYSIQRLP 178
             + +F+R  +T I  L Y+ + RS     FGP   R LL+LR LVGF  +F   +S+Q L 
Sbjct:   140 QILFVRMFITYICCLLYMAITRSVPDAPFGPKPIRKLLLLRGLVGFFGVFGMYFSLQYLS 199

Query:   179 LSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223
             LS A  L+F  P++ +  A ++L EK  I E      S  GV+ I
Sbjct:   200 LSDAVALTFLVPMVTAFLAFVLLHEKYSILEAICSVFSLAGVVLI 244

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2M3R5 SLC35G1 "Solute carrier family 35 member G1" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 9.3e-09, P = 9.3e-09
 Identities = 50/177 (28%), Positives = 82/177 (46%)

Query:    92 GLMCMALSSTIY----FFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIF 147
             GL    LS+ ++     F++ + DV  V+ I  F  VF    V   L Y   R++G    
Sbjct:    71 GLFYTLLSAFLFSVGSLFVKKVQDVHAVE-ISAFRCVFQMLVVIPCLIY---RKTG--FI 124

Query:   148 GPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKI 207
             GP   R  L+LR ++G  ++    Y+ Q + L+ ATV++F++P+  SI A I L+EK   
Sbjct:   125 GPKGQRIFLILRGVLGSTAMMLIYYAYQTMSLADATVITFSSPVFTSIFAWICLKEKYSP 184

Query:   208 AEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYYAKNGFHAYVNSQVFSGETRFI 264
              +      +  GV+ I R           +++ +     G  A + S VF+  T  I
Sbjct:   185 WDALFTVFTITGVILIVRPPFLFGSDTSGMEESYSGHLKGTFAAIGSAVFAASTLVI 241

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0282673 DDB_G0282673 "Uncharacterized membrane protein YMR253C" [Dictyostelium discoideum (taxid:44689)]

 Score = 156 (60.0 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 43/143 (30%), Positives = 76/143 (53%)

Query:    84 VWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMR---CTVTLILSYLWLR 140
             +W  S++ G++ + LS+ ++  M  ++   + + +   E  F R   C +  +L    L+
Sbjct:   211 IW--SKFQGIILLVLSTGLFSVM-ALAVKQLSKELSSLEIAFFRSFYCFIGCLLILFPLK 267

Query:   141 RSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARII 200
              +  P+ GP   R  L LR L G + L ++ YSI  LPLS+A ++SFT+P+M +  A ++
Sbjct:   268 IN--PL-GPKEKRLFLSLRGLSGTIGLCAYFYSITVLPLSEAVIISFTSPVMTAALAAVL 324

Query:   201 LREKLKIAEIGGLALSFFGVLFI 223
             L+EK    +     LS  G+  I
Sbjct:   325 LKEKWGPVQAICAFLSLCGITVI 347

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|I3LCX7 SLC35G1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 152 (58.6 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 41/138 (29%), Positives = 72/138 (52%)

Query:    92 GLMCMALSSTIY----FFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIF 147
             G+  M LS+ ++     F++ + D+  V+ I  F  VF    + +I+  L  R++G    
Sbjct:    72 GMFYMLLSAFLFSVAALFVKKVQDIHAVE-ISAFRCVFQ---MLIIIPCLIYRKTG--FI 125

Query:   148 GPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKI 207
             GP   R  L+LR ++G +S+    Y+ Q   L+ ATV++F+ P+  SI A I L+E+  +
Sbjct:   126 GPKDQRIFLILRGVLGSVSMILIYYAYQSTSLADATVITFSCPVFTSIFACIFLKERYSL 185

Query:   208 AEIGGLALSFFGVLFIFR 225
              +      +  GV+ I R
Sbjct:   186 WDAVFTVFTLTGVILIVR 203

GO:0016020 "membrane" evidence=IEA

SGD|S000004866 YMR253C "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 148 (57.2 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 38/120 (31%), Positives = 62/120 (51%)

Query:   111 DVFMVQSIPLFETVFMRCTVTLI--LSYLWLRRS--GQPIFGPMHARNLLVLRALVGFLS 166
             D+   + I   + + +R  +T I  L Y+++ +S      FG    R  LVLR   GF  
Sbjct:    97 DIANDRQIKPLQILLVRMVITYIGTLIYMYINKSTISDVPFGKPEVRKWLVLRGCTGFFG 156

Query:   167 LFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKL-KIAEIGGLALSFFGVLFIFR 225
             +F   YS+  L +S A +++F AP +    + +ILRE+  K+  +G L +S  GV+ I R
Sbjct:   157 VFGMYYSLMYLTISDAVLITFLAPSLTIFLSWVILRERFTKVEALGSL-ISLLGVVLIVR 215

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025940001 SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (389 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	278
pfam00892	126	pfam00892, EamA, EamA-like transporter family	8e-13
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	1e-10
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	2e-06

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 63.4 bits (155), Expect = 8e-13
 Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 2/115 (1%)

Query: 113 FMVQSIPLFETVFMRCTVT--LILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSF 170
            +++ I        R  +   L++  L+L R    +        LL L      L    +
Sbjct: 12  KLLERISPLTFTAYRFLIAGILLILLLFLLRKPFALLSLKAILALLYLGLFGTALGYLLY 71

Query: 171 VYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225
            Y+++ +  S A+V++  +P+   I + ++L EKL + ++ G+ L   GVL I  
Sbjct: 72  FYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 60.7 bits (147), Expect = 1e-10
 Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 2/144 (1%)

Query: 91  SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPM 150
            GL+ + L   ++    +   + +    P      +R  +  +L    L    + +   +
Sbjct: 7   LGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPAL 66

Query: 151 HARN-LLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIIL-REKLKIA 208
                LL+L  L   L       +++    S A+++    P+  ++ A ++L  E+L + 
Sbjct: 67  RPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL 126

Query: 209 EIGGLALSFFGVLFIFRRILTTQG 232
           +I G+ L+  GVL I         
Sbjct: 127 QILGILLALAGVLLILLGGGGGGI 150

Length = 292

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 1/135 (0%)

Query: 92  GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMH 151
           GL+    ++ ++     +              +       L+L   +L   G PI     
Sbjct: 155 GLLLALAAALLWALYTALVKRLSRLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAW 214

Query: 152 ARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIG 211
              LL L      L+   + Y+++ L  S   +LS   P+ A++   ++L E L  A++ 
Sbjct: 215 LL-LLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLL 273

Query: 212 GLALSFFGVLFIFRR 226
           G AL   GVL    R
Sbjct: 274 GAALVVLGVLLASLR 288

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	278
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.88
PRK15430	296	putative chloramphenical resistance permease RarD;	99.87
PRK11689	295	aromatic amino acid exporter; Provisional	99.83
PRK11272	292	putative DMT superfamily transporter inner membran	99.83
PLN00411	358	nodulin MtN21 family protein; Provisional	99.83
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.81
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.8
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.77
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.74
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.73
COG2510	140	Predicted membrane protein [Function unknown]	99.72
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.72
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.66
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.66
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.6
COG2962	293	RarD Predicted permeases [General function predict	99.58
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.54
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.51
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.44
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.43
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.39
PRK11689	295	aromatic amino acid exporter; Provisional	99.38
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.36
PRK11272	292	putative DMT superfamily transporter inner membran	99.33
PLN00411	358	nodulin MtN21 family protein; Provisional	99.28
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.23
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.18
PRK15430	296	putative chloramphenical resistance permease RarD;	99.09
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.07
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.05
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.99
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.9
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.9
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.88
KOG2765	416	consensus Predicted membrane protein [Function unk	98.88
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.87
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.86
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.84
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.49
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.4
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.37
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.27
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.19
PRK10650	109	multidrug efflux system protein MdtI; Provisional	98.16
COG2962	293	RarD Predicted permeases [General function predict	98.15
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.15
COG2076	106	EmrE Membrane transporters of cations and cationic	98.11
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.1
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	98.1
PRK09541	110	emrE multidrug efflux protein; Reviewed	98.08
PRK11431	105	multidrug efflux system protein; Provisional	98.05
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.0
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.96
PRK13499	345	rhamnose-proton symporter; Provisional	97.96
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.88
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	97.8
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.76
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	97.76
KOG3912	372	consensus Predicted integral membrane protein [Gen	97.66
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.62
KOG2766	336	consensus Predicted membrane protein [Function unk	97.6
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.58
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.43
PRK13499	345	rhamnose-proton symporter; Provisional	97.41
KOG1581	327	consensus UDP-galactose transporter related protei	97.3
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	97.29
KOG2765	416	consensus Predicted membrane protein [Function unk	97.24
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.08
KOG2922	335	consensus Uncharacterized conserved protein [Funct	96.77
KOG1443	349	consensus Predicted integral membrane protein [Fun	96.54
KOG1581	327	consensus UDP-galactose transporter related protei	96.4
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.4
KOG1580	337	consensus UDP-galactose transporter related protei	96.24
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	95.94
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	95.86
KOG1580	337	consensus UDP-galactose transporter related protei	95.72
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	94.94
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	94.64
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	94.2
KOG1582	367	consensus UDP-galactose transporter related protei	94.06
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	93.46
PRK02237	109	hypothetical protein; Provisional	93.24
KOG1443	349	consensus Predicted integral membrane protein [Fun	93.17
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	92.78
KOG4831	125	consensus Unnamed protein [Function unknown]	91.96
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	90.74
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	90.18
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	90.16
COG1742	109	Uncharacterized conserved protein [Function unknow	86.94
KOG2766	336	consensus Predicted membrane protein [Function unk	85.85

>TIGR00688 rarD rarD protein

Probab=99.88  E-value=8.6e-21  Score=167.60  Aligned_cols=163  Identities=12%  Similarity=0.119  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCC-----C---CCCcchHHHHHHHHHH
Q 023719           91 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQP-----I---FGPMHARNLLVLRALV  162 (278)
Q Consensus        91 ~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~-----~---~~~~~~~~~~~l~g~~  162 (278)
                      +|++++++++++||.++++.|.+  .+++|.++.++|++++.+++.++...++++     .   ..+++++..+.++|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~--~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL--KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            48999999999999999999984  579999999999999998877655332211     1   1122224456778888


Q ss_pred             HHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccchhhHHHHHH
Q 023719          163 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFY  242 (278)
Q Consensus       163 ~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~g~l~a  242 (278)
                      ....+.++++|++++++++++++.++.|+++++++++++|||+++++|++++++++|++++..++.+    ....+++++
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~----~~~~~l~aa  155 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGS----LPWEALVLA  155 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCC----chHHHHHHH
Confidence            8889999999999999999999999999999999999999999999999999999999988764321    124567778


Q ss_pred             HHHHHHHHHhhhhhccC
Q 023719          243 YAKNGFHAYVNSQVFSG  259 (278)
Q Consensus       243 l~~A~~~i~~r~~~~~~  259 (278)
                      ++|++|.+..|+..+++
T Consensus       156 ~~~a~~~i~~~~~~~~~  172 (256)
T TIGR00688       156 FSFTAYGLIRKALKNTD  172 (256)
T ss_pred             HHHHHHHHHHhhcCCCC
Confidence            88999999999986543

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.87  E-value=1.6e-20  Score=169.58  Aligned_cols=180  Identities=11%  Similarity=0.102  Sum_probs=139.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCC-C----CCCcchHHHHHHHHHH
Q 023719           88 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQP-I----FGPMHARNLLVLRALV  162 (278)
Q Consensus        88 ~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~-~----~~~~~~~~~~~l~g~~  162 (278)
                      ++.+|++++++++++||.++++.|..  .+++|.++.++|++++.+++.++...+++. .    ..+++.+...+.+++.
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~--~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI--YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVL   82 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHH
Confidence            44689999999999999999999985  579999999999999988776655433221 1    1122333344566666


Q ss_pred             HHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccchhhHHHHHH
Q 023719          163 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFY  242 (278)
Q Consensus       163 ~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~g~l~a  242 (278)
                      .+..+.++++|++++|+++++++.++.|+++++++++++|||+++++|+|++++++|++++..++..    ....+++.+
T Consensus        83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~----~~~~~l~aa  158 (296)
T PRK15430         83 IGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGS----LPIIALGLA  158 (296)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCC----ccHHHHHHH
Confidence            7778999999999999999999999999999999999999999999999999999999998865321    224677778


Q ss_pred             HHHHHHHHHhhhhhccCCc--hhHHHHHHHHHH
Q 023719          243 YAKNGFHAYVNSQVFSGET--RFICAYVAIDTS  273 (278)
Q Consensus       243 l~~A~~~i~~r~~~~~~~~--~~i~~y~~l~~~  273 (278)
                      ++||.|.++.|+...+...  .....|...++.
T Consensus       159 ~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~  191 (296)
T PRK15430        159 FSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAA  191 (296)
T ss_pred             HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Confidence            8899999999997543322  233344444443

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.83  E-value=7.7e-19  Score=158.49  Aligned_cols=170  Identities=12%  Similarity=0.042  Sum_probs=132.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 023719           90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFS  169 (278)
Q Consensus        90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  169 (278)
                      .++++++++++++||.+++..|... ++++|+.+.++|+.++.++++++..++   . .++++++..+.+++.......+
T Consensus         3 ~~~~l~~l~a~~~Wg~~~~~~k~~~-~~~~P~~~~~~R~~~a~l~l~~~~~~~---~-~~~~~~~~~~~~~l~~~~~~~~   77 (295)
T PRK11689          3 QKATLIGLIAILLWSTMVGLIRGVS-ESLGPVGGAAMIYSVSGLLLLLTVGFP---R-LRQFPKRYLLAGGLLFVSYEIC   77 (295)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHH-ccCChHHHHHHHHHHHHHHHHHHcccc---c-cccccHHHHHHHhHHHHHHHHH
Confidence            4588899999999999999999976 899999999999999998887654211   1 1223344555555554455566


Q ss_pred             HHHHhh----cCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccc-----------cch
Q 023719          170 FVYSIQ----RLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQ-----------GRE  234 (278)
Q Consensus       170 ~~~al~----~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~-----------~~~  234 (278)
                      ++.+++    ..++++++++.++.|+++.+++++++|||+++++++|++++++|++++..++....           ..+
T Consensus        78 ~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G  157 (295)
T PRK11689         78 LALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLS  157 (295)
T ss_pred             HHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHH
Confidence            776765    46888999999999999999999999999999999999999999999987643110           012


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhccCCchhH
Q 023719          235 VSLQKLFYYAKNGFHAYVNSQVFSGETRFI  264 (278)
Q Consensus       235 ~~~g~l~al~~A~~~i~~r~~~~~~~~~~i  264 (278)
                      ..+.++++++||.|.++.||..++.++...
T Consensus       158 ~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~  187 (295)
T PRK11689        158 YGLAFIGAFIWAAYCNVTRKYARGKNGITL  187 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCchhH
Confidence            345556677799999999999877766544

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.83  E-value=1.5e-18  Score=156.41  Aligned_cols=179  Identities=13%  Similarity=0.047  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHH-HHHHHHH
Q 023719           92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVG-FLSLFSF  170 (278)
Q Consensus        92 g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~  170 (278)
                      -.++.++..++||.+.++.|... ++++|.+++++|+.++.++++++...++++. .++++++.....|.++ ...+.++
T Consensus         9 ~~~~~~~~~~iWg~~~~~~K~~~-~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~   86 (292)
T PRK11272          9 LFGALFALYIIWGSTYLVIRIGV-ESWPPLMMAGVRFLIAGILLLAFLLLRGHPL-PTLRQWLNAALIGLLLLAVGNGMV   86 (292)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888999999999999976 7999999999999999998888776554432 3455566666666655 4567788


Q ss_pred             HHHh-hcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccc-cchhhHHHHHHHHHHHH
Q 023719          171 VYSI-QRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQ-GREVSLQKLFYYAKNGF  248 (278)
Q Consensus       171 ~~al-~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~-~~~~~~g~l~al~~A~~  248 (278)
                      +++. +++++++++++.++.|+++.+++++ +|||+++++++|++++++|+.++..++.... ..+..++++.+++||.+
T Consensus        87 ~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~  165 (292)
T PRK11272         87 TVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFG  165 (292)
T ss_pred             HHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHH
Confidence            8898 9999999999999999999999985 7999999999999999999998865432111 12455667777889999


Q ss_pred             HHHhhhhhccCCchhHHHHHHHHHHH
Q 023719          249 HAYVNSQVFSGETRFICAYVAIDTSK  274 (278)
Q Consensus       249 ~i~~r~~~~~~~~~~i~~y~~l~~~l  274 (278)
                      .+..||..+++ +....+|...++++
T Consensus       166 ~~~~~~~~~~~-~~~~~~~~~~~~~~  190 (292)
T PRK11272        166 SVWSSRLPLPV-GMMAGAAEMLAAGV  190 (292)
T ss_pred             HHHHHhcCCCc-chHHHHHHHHHHHH
Confidence            99999986543 45566676665554

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.83  E-value=1.1e-18  Score=161.29  Aligned_cols=186  Identities=12%  Similarity=0.042  Sum_probs=145.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCC-C--CCCCcchHHHHHHHHHHHHH
Q 023719           89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQ-P--IFGPMHARNLLVLRALVGFL  165 (278)
Q Consensus        89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~-~--~~~~~~~~~~~~l~g~~~~~  165 (278)
                      +.+.++.|++.-++++...++.|.+...+++|+.+.++|+.++.++++++.+.+++ +  ....++++..+.+.|++++.
T Consensus        11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~   90 (358)
T PLN00411         11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSM   90 (358)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHH
Confidence            36788999999999999999999998899999999999999999998887654322 2  11224455667777777765


Q ss_pred             HHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHH------hcCCCcHHHHHHHHHHHHHhHHhhccccc----------
Q 023719          166 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARII------LREKLKIAEIGGLALSFFGVLFIFRRILT----------  229 (278)
Q Consensus       166 ~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~------l~Er~~~~~~~gi~l~~~Gv~li~~~~~~----------  229 (278)
                      .+.+++++++++++++++++.++.|+++.++++++      +|||+++++++|++++++|+.++...+..          
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~  170 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY  170 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence            66689999999999999999999999999999999      69999999999999999999988743211          


Q ss_pred             -----------cccchhhHH----HHHHHHHHHHHHHhhhhhccCCch-hHHHHHHHHHHH
Q 023719          230 -----------TQGREVSLQ----KLFYYAKNGFHAYVNSQVFSGETR-FICAYVAIDTSK  274 (278)
Q Consensus       230 -----------~~~~~~~~g----~l~al~~A~~~i~~r~~~~~~~~~-~i~~y~~l~~~l  274 (278)
                                 ..+....+|    ++.+++||+|.++.|+..+++++. ..++|.++++++
T Consensus       171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~  231 (358)
T PLN00411        171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSI  231 (358)
T ss_pred             ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHH
Confidence                       001111223    344566999999999998877554 556676655544

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.81  E-value=7.3e-18  Score=152.38  Aligned_cols=173  Identities=15%  Similarity=0.165  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHH-HHHHHH
Q 023719           92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGF-LSLFSF  170 (278)
Q Consensus        92 g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~  170 (278)
                      ..++.++++++||.+.++.|... ++++|.++.++|+.+++++++++..+++       ..++..+..|+... ..+.++
T Consensus         5 ~~l~~l~~~~~Wg~~~~~~k~~~-~~~~p~~~~~~R~~~a~~~l~~~~~~~~-------~~~~~~~~~g~~~~~~~~~~~   76 (299)
T PRK11453          5 DGVLALLVVVVWGLNFVVIKVGL-HNMPPLMLAGLRFMLVAFPAIFFVARPK-------VPLNLLLGYGLTISFGQFAFL   76 (299)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHhcCCC-------CchHHHHHHHHHHHHHHHHHH
Confidence            34668899999999999999976 7899999999999998776655443221       12333444455444 344567


Q ss_pred             HHHhhc-CchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcccccccc---chhhHHHHHHHHHH
Q 023719          171 VYSIQR-LPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQG---REVSLQKLFYYAKN  246 (278)
Q Consensus       171 ~~al~~-~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~---~~~~~g~l~al~~A  246 (278)
                      |.++++ .++++++++.++.|+++.+++++++|||+++++++|++++++|+.++..++.....   .++.+.++++++|+
T Consensus        77 ~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a  156 (299)
T PRK11453         77 FCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWA  156 (299)
T ss_pred             HHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHH
Confidence            889988 68999999999999999999999999999999999999999999999865322211   13345566677799


Q ss_pred             HHHHHhhhhhccCCch---hHHHHHHHHH
Q 023719          247 GFHAYVNSQVFSGETR---FICAYVAIDT  272 (278)
Q Consensus       247 ~~~i~~r~~~~~~~~~---~i~~y~~l~~  272 (278)
                      ++.++.|+..++.+..   ...+|.++.+
T Consensus       157 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  185 (299)
T PRK11453        157 CGNIFNKKIMSHSTRPAVMSLVVWSALIP  185 (299)
T ss_pred             HHHHHHHHHhcccCccchhHHHHHHHHHH
Confidence            9999999986654432   3345544443

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.80  E-value=6.5e-18  Score=148.95  Aligned_cols=168  Identities=17%  Similarity=0.176  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCchHHH
Q 023719          103 YFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQA  182 (278)
Q Consensus       103 ~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a  182 (278)
                      ||.+++..|....+..|+.++.+.|++.+.+++.++.+++    ..+++.++.+..+++...+.+.++++|+++++++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~   76 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEA   76 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence            7889999999865678999999999999988887765544    122333444455555566788899999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccc-cchhhHHHHHHHHHHHHHHHhhhhhccCCc
Q 023719          183 TVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQ-GREVSLQKLFYYAKNGFHAYVNSQVFSGET  261 (278)
Q Consensus       183 ~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~-~~~~~~g~l~al~~A~~~i~~r~~~~~~~~  261 (278)
                      +++.++.|+++++++++++|||+++++++|++++++|+.++..++.... ..+..++++.+++|+.+.++.|+..++.++
T Consensus        77 ~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~  156 (260)
T TIGR00950        77 ALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGP  156 (260)
T ss_pred             HHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCc
Confidence            9999999999999999999999999999999999999999876542221 123445666777799999999999877665


Q ss_pred             hhHHH--HHHHHHHH
Q 023719          262 RFICA--YVAIDTSK  274 (278)
Q Consensus       262 ~~i~~--y~~l~~~l  274 (278)
                      ..+.+  |.+.++++
T Consensus       157 ~~~~~~~~~~~~~~~  171 (260)
T TIGR00950       157 ELLQFTGWVLLLGAL  171 (260)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            44333  44555544

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.77  E-value=5.4e-17  Score=146.33  Aligned_cols=175  Identities=11%  Similarity=0.030  Sum_probs=136.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHH
Q 023719           89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLF  168 (278)
Q Consensus        89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  168 (278)
                      +.+|+.++++++++|+.++.+.|++. ++++|.++.++|++++.++++++.++++++  .++++++..+..|++....+.
T Consensus        10 ~~~~~~~~~la~~~~~~~~~~~K~~~-~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~   86 (293)
T PRK10532         10 VWLPILLLLIAMASIQSGASLAKSLF-PLVGAPGVTALRLALGTLILIAIFKPWRLR--FAKEQRLPLLFYGVSLGGMNY   86 (293)
T ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHH-HHcCHHHHHHHHHHHHHHHHHHHHhHHhcc--CCHHHHHHHHHHHHHHHHHHH
Confidence            36799999999999999999999987 679999999999999998888766543322  234566677788888788888


Q ss_pred             HHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcccccccc-c--hhhHHHHHHHHH
Q 023719          169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQG-R--EVSLQKLFYYAK  245 (278)
Q Consensus       169 ~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~-~--~~~~g~l~al~~  245 (278)
                      +++++++++|++.++++.++.|+++.+++    +||+.+  +.++.++++|+.++..++.+..+ .  +..++++.+++|
T Consensus        87 ~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~  160 (293)
T PRK10532         87 LFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACW  160 (293)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999887    366554  45677889999988755432211 1  344566667779


Q ss_pred             HHHHHHhhhhhccCCchhHHHHHHHHHH
Q 023719          246 NGFHAYVNSQVFSGETRFICAYVAIDTS  273 (278)
Q Consensus       246 A~~~i~~r~~~~~~~~~~i~~y~~l~~~  273 (278)
                      |+|.+..|+..++.++..+ .|..++++
T Consensus       161 a~~~v~~r~~~~~~~~~~~-~~~~~~~~  187 (293)
T PRK10532        161 AIYILSGQRAGAEHGPATV-AIGSLIAA  187 (293)
T ss_pred             HHHHHHHHHHhccCCchHH-HHHHHHHH
Confidence            9999999999877777665 45555544

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.74  E-value=3.2e-16  Score=140.43  Aligned_cols=165  Identities=12%  Similarity=0.088  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHh--CCC-CCCCcchHHHHHHHHHHHHHHHHH
Q 023719           93 LMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRS--GQP-IFGPMHARNLLVLRALVGFLSLFS  169 (278)
Q Consensus        93 ~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~--~~~-~~~~~~~~~~~~l~g~~~~~~~~~  169 (278)
                      .++.++++++|+..++..|... ++.++.  .++++....+++.++...+  ++. ...+++++...+.+++.....+.+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~-~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHA-DKEPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLG   79 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC-CchhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            5688999999999999999754 443443  4777777777776665543  211 222345566677788888888999


Q ss_pred             HHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccc-cchhhHHHHHHHHHHHH
Q 023719          170 FVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQ-GREVSLQKLFYYAKNGF  248 (278)
Q Consensus       170 ~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~-~~~~~~g~l~al~~A~~  248 (278)
                      +++|+++.++++++.+.++.|+++++++++++|||+++++|+|++++++|++++..++.... ..+..++++.+++|++|
T Consensus        80 ~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~  159 (281)
T TIGR03340        80 LAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIY  159 (281)
T ss_pred             HHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999876543221 11334567777889999


Q ss_pred             HHHhhhhhccCC
Q 023719          249 HAYVNSQVFSGE  260 (278)
Q Consensus       249 ~i~~r~~~~~~~  260 (278)
                      .++.|+..++.+
T Consensus       160 ~i~~k~~~~~~~  171 (281)
T TIGR03340       160 SLSDKAAALGVP  171 (281)
T ss_pred             hhhccccccchh
Confidence            999888754433

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.73  E-value=1e-15  Score=138.44  Aligned_cols=167  Identities=11%  Similarity=0.046  Sum_probs=132.5

Q ss_pred             HHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHH
Q 023719          107 QVISDVFMVQS-IPLFETVFMRCTVTLILSYLWLRR-SGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATV  184 (278)
Q Consensus       107 ~v~~k~~~~~~-~~p~~~~~~R~~~a~l~l~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~  184 (278)
                      .+..|++. ++ ..|..+.++|+.++.+++.+.... .+++...++++++.++..|++....+.+.++++++++++++++
T Consensus        18 ~~~NK~~l-~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~l   96 (302)
T TIGR00817        18 NIYNKKLL-NVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHT   96 (302)
T ss_pred             HHHHHHHH-hhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            35678877 55 679999999999988776555221 1222223466788888899998888889999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccchhhHHHHHHHHHHHHHHHhhhhhc--cCCch
Q 023719          185 LSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYYAKNGFHAYVNSQVF--SGETR  262 (278)
Q Consensus       185 l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~g~l~al~~A~~~i~~r~~~~--~~~~~  262 (278)
                      +.++.|+++++++++++|||+++++++|++++++|+.+....+......+..++.+.+++|+++.++.||..+  +.++.
T Consensus        97 i~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~  176 (302)
T TIGR00817        97 IKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKT  176 (302)
T ss_pred             HHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcc
Confidence            9999999999999999999999999999999999998765333221111344556667779999999999887  77889


Q ss_pred             hHHHHHHHHHHH
Q 023719          263 FICAYVAIDTSK  274 (278)
Q Consensus       263 ~i~~y~~l~~~l  274 (278)
                      .+++|.++.+++
T Consensus       177 ~~~~~~~~~~~~  188 (302)
T TIGR00817       177 NLYAYISIMSLF  188 (302)
T ss_pred             cHHHHHHHHHHH
Confidence            999999877765

specificities overlap.

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.72  E-value=4.9e-17  Score=125.57  Aligned_cols=132  Identities=19%  Similarity=0.253  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHHHHHHH
Q 023719           92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFG---PMHARNLLVLRALVGFLSLF  168 (278)
Q Consensus        92 g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~~~~  168 (278)
                      ..+++++++++|++..++.|... +++||..-.++|.++...++..+....++....   .++.|..+.+.|+.+..++.
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl-~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl   82 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGL-EGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL   82 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-cccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence            56899999999999999999986 999999999999999998888887776654333   56778899999999999999


Q ss_pred             HHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719          169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  224 (278)
Q Consensus       169 ~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~  224 (278)
                      +||+|++...++.+..+-.++|+++++++++|+|||++..+|+|++++.+|++++.
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            99999999999999999999999999999999999999999999999999998864

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.72  E-value=3.2e-15  Score=138.06  Aligned_cols=184  Identities=11%  Similarity=0.067  Sum_probs=136.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHHHHHHhC--CCCCC-CcchHHHHHHHHHHHHH
Q 023719           90 YSGLMCMALSSTIYFFMQVISDVFMVQSIP-LFETVFMRCTVTLILSYLWLRRSG--QPIFG-PMHARNLLVLRALVGFL  165 (278)
Q Consensus        90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~--~~~~~-~~~~~~~~~l~g~~~~~  165 (278)
                      .+..++.+.--.+-....+..|.+. +.++ |+.+..+|++++.+++..+.....  .++.. .+++++.++..|+++..
T Consensus        48 ~~~~~~~~~wy~~s~~~~~~nK~vl-~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~  126 (350)
T PTZ00343         48 WKLALLFLTWYALNVLYVVDNKLAL-NMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLF  126 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4444555554455555677788886 7799 999999999999876554433211  12222 23467788888998888


Q ss_pred             HHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccchhhHHHHHHHHH
Q 023719          166 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYYAK  245 (278)
Q Consensus       166 ~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~g~l~al~~  245 (278)
                      .+...+.|+++++++.+.++.+++|+++++++++++|||++++++++++++++|+.+....+......+...+.+.++++
T Consensus       127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~  206 (350)
T PTZ00343        127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGS  206 (350)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHH
Confidence            77777899999999999999999999999999999999999999999999999999987544332222344556666679


Q ss_pred             HHHHHHhhhhhccCC-------chhHHHHHHHHHHH
Q 023719          246 NGFHAYVNSQVFSGE-------TRFICAYVAIDTSK  274 (278)
Q Consensus       246 A~~~i~~r~~~~~~~-------~~~i~~y~~l~~~l  274 (278)
                      +++.++.|+..++.+       +..+..|.++++++
T Consensus       207 a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l  242 (350)
T PTZ00343        207 SLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASL  242 (350)
T ss_pred             HHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHH
Confidence            999999999876532       44455555666654

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.66  E-value=3e-14  Score=126.49  Aligned_cols=177  Identities=16%  Similarity=0.099  Sum_probs=139.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCcchHHHHHHHHHHHHHHH
Q 023719           89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQ-PIFGPMHARNLLVLRALVGFLSL  167 (278)
Q Consensus        89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~  167 (278)
                      ...+..+.++.++.|+......|.......++....+.|+..+.++..+...+++. .....++.++..+.+++.....+
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPF   84 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence            35688888999999999999999986233777778888999988884444443321 22222223456677777778888


Q ss_pred             HHHHHHhhcCchHHHHHHHhhHHHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHhHHhhcccccccc---chhhHHHHHHH
Q 023719          168 FSFVYSIQRLPLSQATVLSFTAPIMASIAAR-IILREKLKIAEIGGLALSFFGVLFIFRRILTTQG---REVSLQKLFYY  243 (278)
Q Consensus       168 ~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~-l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~---~~~~~g~l~al  243 (278)
                      .+++.++++++++.++.+.++.|+++.++++ +++|||++++++.++.++++|++++..++.....   .+...+++.++
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~  164 (292)
T COG0697          85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAAL  164 (292)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999997 6679999999999999999999999988765432   34556677777


Q ss_pred             HHHHHHHHhhhhhccCCchhHHH
Q 023719          244 AKNGFHAYVNSQVFSGETRFICA  266 (278)
Q Consensus       244 ~~A~~~i~~r~~~~~~~~~~i~~  266 (278)
                      .+|++.+..|+.. +.++.....
T Consensus       165 ~~a~~~~~~~~~~-~~~~~~~~~  186 (292)
T COG0697         165 LWALYTALVKRLS-RLGPVTLAL  186 (292)
T ss_pred             HHHHHHHHHHHhc-CCChHHHHH
Confidence            7999999999987 566666665

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.66  E-value=1.2e-17  Score=143.88  Aligned_cols=184  Identities=21%  Similarity=0.293  Sum_probs=145.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHH
Q 023719           89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLF  168 (278)
Q Consensus        89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  168 (278)
                      ..+|+++..++ .++.+..+..+..  .+.+|.++.-.|+++-.++.++.....++..+.++..+++++++|+.++.+..
T Consensus        36 p~~gl~l~~vs-~ff~~~~vv~t~~--~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvm  112 (346)
T KOG4510|consen   36 PNLGLLLLTVS-YFFNSCMVVSTKV--LENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVM  112 (346)
T ss_pred             CccCceehhhH-HHHhhHHHhhhhh--hccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHH
Confidence            45688888888 5565555555554  47899999999987777776665554554544555556778999999999999


Q ss_pred             HHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccc----cc------hhhHH
Q 023719          169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQ----GR------EVSLQ  238 (278)
Q Consensus       169 ~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~----~~------~~~~g  238 (278)
                      +.|||+++++.++|+++.+..|+|+.+++|.++|||.++.+.++..+.+.||+++++|.....    +.      .+..|
T Consensus       113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~g  192 (346)
T KOG4510|consen  113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPG  192 (346)
T ss_pred             HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCc
Confidence            999999999999999999999999999999999999999999999999999999999864321    10      11223


Q ss_pred             ----HHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHh
Q 023719          239 ----KLFYYAKNGFHAYVNSQVFSGETRFICAYVAIDTSKI  275 (278)
Q Consensus       239 ----~l~al~~A~~~i~~r~~~~~~~~~~i~~y~~l~~~li  275 (278)
                          +...+..|.-+|+.|++.++.+....+-|+.+++.+.
T Consensus       193 t~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~  233 (346)
T KOG4510|consen  193 TVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVV  233 (346)
T ss_pred             hHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHH
Confidence                3333346678889999999988888888888887763

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.60  E-value=1.1e-14  Score=113.42  Aligned_cols=122  Identities=20%  Similarity=0.304  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCCcchHHHHHHHHHH-HHHHHHHHHHHhhcC
Q 023719          101 TIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSG--QPIFGPMHARNLLVLRALV-GFLSLFSFVYSIQRL  177 (278)
Q Consensus       101 ~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~--~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~al~~~  177 (278)
                      ++||.+.++.|... ++.||.+..++|+..+.+ ++++....+  +....+.+.+...+..+++ ..+++.+++++++++
T Consensus         1 ~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLL-KKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHh-ccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            46999999999987 779999999999999997 444333222  2122333445555555555 688999999999999


Q ss_pred             chHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719          178 PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  224 (278)
Q Consensus       178 ~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~  224 (278)
                      +++.++.+.+++|+++.+++++++||++++++++|++++++|++++.
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999875

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.58  E-value=1.3e-13  Score=120.91  Aligned_cols=161  Identities=16%  Similarity=0.185  Sum_probs=131.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCCcchHHHHHHHHHHH
Q 023719           89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQP-----IFGPMHARNLLVLRALVG  163 (278)
Q Consensus        89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~  163 (278)
                      ..+|+++.+.+.+.||......|.+  +++++.|+...|.+.+++++..+....++.     ..++++.+..+.+.++..
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll--~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li   82 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLL--EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI   82 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence            3579999999999999999999996  799999999999999988776654422221     123344455667777888


Q ss_pred             HHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccchhhHHHHHHH
Q 023719          164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYY  243 (278)
Q Consensus       164 ~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~g~l~al  243 (278)
                      ...+..|.+|.++-.+-+++.-.+++|++.++++++|+|||+++.||++++++.+||.....-.    ++..+..+..++
T Consensus        83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~----g~lpwval~la~  158 (293)
T COG2962          83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL----GSLPWVALALAL  158 (293)
T ss_pred             HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc----CCCcHHHHHHHH
Confidence            8888999999999999999999999999999999999999999999999999999998876432    223456667778


Q ss_pred             HHHHHHHHhhhh
Q 023719          244 AKNGFHAYVNSQ  255 (278)
Q Consensus       244 ~~A~~~i~~r~~  255 (278)
                      .|+.|..+-|+.
T Consensus       159 sf~~Ygl~RK~~  170 (293)
T COG2962         159 SFGLYGLLRKKL  170 (293)
T ss_pred             HHHHHHHHHHhc
Confidence            888888775554

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.54  E-value=6e-13  Score=119.93  Aligned_cols=173  Identities=12%  Similarity=0.037  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 023719           92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV  171 (278)
Q Consensus        92 g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  171 (278)
                      +++++++++++||...+..|...  +.++.++.  |..++.+++..+....+++....++.+...++.|++-.+++.+++
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~   77 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQF   77 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHH
Confidence            67899999999999999999963  78887775  777777766654433322222234555667777888888999999


Q ss_pred             HHhhcCchHHHHHHHh-hHHHHHHHHHHHHhcCCCcHHH----HHHHHHHHHHhHHhhccccccc--------cchhhHH
Q 023719          172 YSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAE----IGGLALSFFGVLFIFRRILTTQ--------GREVSLQ  238 (278)
Q Consensus       172 ~al~~~~~~~a~~l~~-~~Pl~~~lla~l~l~Er~~~~~----~~gi~l~~~Gv~li~~~~~~~~--------~~~~~~g  238 (278)
                      .++++++++.+..+.+ +.++++.+++.+++|||.++++    ++|++++++|++++...+....        ..+...|
T Consensus        78 ~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~  157 (290)
T TIGR00776        78 KSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLL  157 (290)
T ss_pred             HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHH
Confidence            9999999999999988 8999999999999999999999    9999999999998865432211        1234456


Q ss_pred             HHHHHHHHHHHHHhhhhhccCCchhHHHHHHH
Q 023719          239 KLFYYAKNGFHAYVNSQVFSGETRFICAYVAI  270 (278)
Q Consensus       239 ~l~al~~A~~~i~~r~~~~~~~~~~i~~y~~l  270 (278)
                      ++.+++|+.|.+..|..  ..++...++++..
T Consensus       158 l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~  187 (290)
T TIGR00776       158 LMSTIGYLVYVVVAKAF--GVDGLSVLLPQAI  187 (290)
T ss_pred             HHHHHHHHHHHHHHHHc--CCCcceehhHHHH
Confidence            66777799999999987  3778877555544

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.51  E-value=1.1e-12  Score=115.62  Aligned_cols=133  Identities=18%  Similarity=0.143  Sum_probs=108.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCH--HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHH-HHH
Q 023719           88 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPL--FETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRAL-VGF  164 (278)
Q Consensus        88 ~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p--~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~-~~~  164 (278)
                      ...+|.+++++++++|+.+.+..|... ++.++  .....+++.++.+++.++....++......+.+..++..++ ...
T Consensus       125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (260)
T TIGR00950       125 INPAGLLLGLGSGISFALGTVLYKRLV-KKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTA  203 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhHHh-hcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHH
Confidence            346799999999999999999999976 56664  45555788998888887766544333223344444454444 456


Q ss_pred             HHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhH
Q 023719          165 LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVL  221 (278)
Q Consensus       165 ~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~  221 (278)
                      +++.+|++++++.+++.++.+.+++|+++++++++++||+++..+++|..++++|+.
T Consensus       204 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       204 LAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            899999999999999999999999999999999999999999999999999999973

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.44  E-value=1.2e-11  Score=112.78  Aligned_cols=188  Identities=16%  Similarity=0.124  Sum_probs=138.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCcchHHHHHHHHHHHH
Q 023719           89 RYSGLMCMALSSTIYFFMQVISDVFMVQ--SIPLFETVFMRCTVTLILSYLWLRRSGQP--IFGPMHARNLLVLRALVGF  164 (278)
Q Consensus        89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~--~~~p~~~~~~R~~~a~l~l~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~  164 (278)
                      ..+++++.=+-+++-...+.....+...  +.|.++..+...+...+.......+++..  ....++.|+..++.+++-.
T Consensus        11 ~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv   90 (334)
T PF06027_consen   11 FWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDV   90 (334)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHH
Confidence            3567777777788888888888776543  34556665555554443332333333321  1112233444555689999


Q ss_pred             HHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcccccc-----ccchhhHHH
Q 023719          165 LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTT-----QGREVSLQK  239 (278)
Q Consensus       165 ~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~-----~~~~~~~g~  239 (278)
                      .+.++...|+++++.+.+.++..+.-+++.+++++++|||.++.+++|++++++|+.++...+...     .+.....|+
T Consensus        91 ~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GD  170 (334)
T PF06027_consen   91 EANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGD  170 (334)
T ss_pred             HHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhH
Confidence            999999999999999999999999999999999999999999999999999999999987665322     122334454


Q ss_pred             HH----HHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHhc
Q 023719          240 LF----YYAKNGFHAYVNSQVFSGETRFICAYVAIDTSKIG  276 (278)
Q Consensus       240 l~----al~~A~~~i~~r~~~~~~~~~~i~~y~~l~~~lig  276 (278)
                      ++    +..||++.++-++..++.+......+..+++.++.
T Consensus       171 ll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~  211 (334)
T PF06027_consen  171 LLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIIS  211 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            44    44599999999999999888888888888888764

Some of the sequences in this family are annotated as putative membrane proteins.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.43  E-value=1.8e-12  Score=100.58  Aligned_cols=105  Identities=20%  Similarity=0.325  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCC----CCCcchHHHHHHHHHHHH-HHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHH
Q 023719          125 FMRCTVTLILSYLWLRRSGQPI----FGPMHARNLLVLRALVGF-LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARI  199 (278)
Q Consensus       125 ~~R~~~a~l~l~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~-~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l  199 (278)
                      .+|+.++.+++..+...+++..    ..+++.+...+..|+++. .++.++++|+++.| +.+..+.+++|+++++++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            5789998888877665544321    112234555666677665 88999999999999 58889999999999999999


Q ss_pred             HhcCCCcHHHHHHHHHHHHHhHHhhcccccc
Q 023719          200 ILREKLKIAEIGGLALSFFGVLFIFRRILTT  230 (278)
Q Consensus       200 ~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~  230 (278)
                      ++|||++++++++++++++|++++..++..+
T Consensus        81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~~  111 (113)
T PF13536_consen   81 FFKERLSPRRWLAILLILIGVILIAWSDLTG  111 (113)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhhhhccc
Confidence            9999999999999999999999998776543

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.39  E-value=3.9e-11  Score=103.22  Aligned_cols=174  Identities=11%  Similarity=0.043  Sum_probs=139.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 023719           92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV  171 (278)
Q Consensus        92 g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  171 (278)
                      .+++.+.+++.--...-+.|.+. ..+++.-++.+|..++.+++..+.+..+++  ..+++|..+...|+.....+.+||
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LF-P~vG~~g~t~lRl~~aaLIll~l~RPwr~r--~~~~~~~~~~~yGvsLg~MNl~FY   89 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLF-PLVGAAGVTALRLAIAALILLALFRPWRRR--LSKPQRLALLAYGVSLGGMNLLFY   89 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHc-cccChhhHHHHHHHHHHHHHHHHhhHHHhc--cChhhhHHHHHHHHHHHHHHHHHH
Confidence            56677777777777778889887 899999999999999999998887755433  245678889999999999999999


Q ss_pred             HHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccchhhHHHH----HHHHHHH
Q 023719          172 YSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKL----FYYAKNG  247 (278)
Q Consensus       172 ~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~g~l----~al~~A~  247 (278)
                      .+++++|.+.+..+.|+.|+.+++++.-      +.++.+.+.+++.|+.++.-.+.+ ....+..|..    .+.+|++
T Consensus        90 ~si~riPlGiAVAiEF~GPL~vA~~~sR------r~~d~vwvaLAvlGi~lL~p~~~~-~~~lDp~Gv~~Al~AG~~Wa~  162 (292)
T COG5006          90 LSIERIPLGIAVAIEFTGPLAVALLSSR------RLRDFVWVALAVLGIWLLLPLGQS-VWSLDPVGVALALGAGACWAL  162 (292)
T ss_pred             HHHHhccchhhhhhhhccHHHHHHHhcc------chhhHHHHHHHHHHHHhheeccCC-cCcCCHHHHHHHHHHhHHHHH
Confidence            9999999999999999999998877643      567788889999999887643322 2223344444    4556999


Q ss_pred             HHHHhhhhhccCCchhHHHHHHHHHHHh
Q 023719          248 FHAYVNSQVFSGETRFICAYVAIDTSKI  275 (278)
Q Consensus       248 ~~i~~r~~~~~~~~~~i~~y~~l~~~li  275 (278)
                      |.+.-+|..+.++...-+.+.+++++++
T Consensus       163 YIv~G~r~g~~~~g~~g~a~gm~vAavi  190 (292)
T COG5006         163 YIVLGQRAGRAEHGTAGVAVGMLVAALI  190 (292)
T ss_pred             HHHHcchhcccCCCchHHHHHHHHHHHH
Confidence            9999999998888888888888888774

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.38  E-value=2.4e-11  Score=109.69  Aligned_cols=133  Identities=15%  Similarity=0.134  Sum_probs=102.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCcchHHHHHHHHHHHHHHHH
Q 023719           90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQP-IFGPMHARNLLVLRALVGFLSLF  168 (278)
Q Consensus        90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~  168 (278)
                      ..|.+++++++++|+.+.+..|... ++.++....+   ....+++.+.....+.. .....+.+..++..++...+++.
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~-~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~  230 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYA-RGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYA  230 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcc-CCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHH
Confidence            4599999999999999999999975 6677765432   22233333222222221 11223445555666677778999


Q ss_pred             HHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcc
Q 023719          169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR  226 (278)
Q Consensus       169 ~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~  226 (278)
                      +|++++++.++++++.+.+++|++++++++++++|+++..+++|.++++.|+++....
T Consensus       231 l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~  288 (295)
T PRK11689        231 AWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA  288 (295)
T ss_pred             HHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence            9999999999999999999999999999999999999999999999999999887643

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.36  E-value=5.3e-11  Score=107.31  Aligned_cols=136  Identities=11%  Similarity=-0.010  Sum_probs=105.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHH-HHHHHH
Q 023719           89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRAL-VGFLSL  167 (278)
Q Consensus        89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~-~~~~~~  167 (278)
                      ...|.+++++++++|+.+.+..|... ++.++....... +++.+++.++..............+...+..|+ ...+++
T Consensus       146 ~~~G~ll~l~aa~~~a~~~v~~r~~~-~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~  223 (293)
T PRK10532        146 DLTGAALALGAGACWAIYILSGQRAG-AEHGPATVAIGS-LIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPY  223 (293)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHh-ccCCchHHHHHH-HHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHH
Confidence            35699999999999999999999975 677887765544 455555555544432211112223333334444 455788


Q ss_pred             HHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcc
Q 023719          168 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR  226 (278)
Q Consensus       168 ~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~  226 (278)
                      .+|++++++.++++++.+.+++|++++++++++++|+++..+++|.+++++|+++....
T Consensus       224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            89999999999999999999999999999999999999999999999999999888644

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.33  E-value=9.6e-11  Score=105.56  Aligned_cols=135  Identities=15%  Similarity=0.147  Sum_probs=107.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCcchHHHHHHHHHH-HHH
Q 023719           89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPI--FGPMHARNLLVLRALV-GFL  165 (278)
Q Consensus        89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~--~~~~~~~~~~~l~g~~-~~~  165 (278)
                      ...|.+++++++++|+.+.+..|... . -++.....+++.++.+++.++....+...  ....+.|..++..+++ ..+
T Consensus       148 ~~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~  225 (292)
T PRK11272        148 NPWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII  225 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence            35799999999999999999999964 3 34556677888888777766655433221  1223345455555554 568


Q ss_pred             HHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhc
Q 023719          166 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR  225 (278)
Q Consensus       166 ~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~  225 (278)
                      ++.+|++++++.++++++.+.+++|+++++++++++||+++..+++|.++++.|++++..
T Consensus       226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999988754

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.28  E-value=2.8e-10  Score=105.36  Aligned_cols=136  Identities=11%  Similarity=0.136  Sum_probs=102.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHHHHHHHHH-hCC--CCC-CCcc-hHHHHHHHHHHH
Q 023719           90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPL-FETVFMRCTVTLILSYLWLRR-SGQ--PIF-GPMH-ARNLLVLRALVG  163 (278)
Q Consensus        90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p-~~~~~~R~~~a~l~l~~~~~~-~~~--~~~-~~~~-~~~~~~l~g~~~  163 (278)
                      ..|.+++++++++|+++.++.|... ...++ ....++...++.+.+.+.... .+.  ..+ .... ....++..++..
T Consensus       188 ~lG~~l~l~aa~~wa~~~il~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t  266 (358)
T PLN00411        188 LIGGALLTIQGIFVSVSFILQAHIM-SEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIIT  266 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHH
Confidence            4589999999999999999999875 55655 456667666665554433322 221  111 0011 112233445555


Q ss_pred             HHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcc
Q 023719          164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR  226 (278)
Q Consensus       164 ~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~  226 (278)
                      .+++.+|++++++.+++.++...++.|++++++++++++|+++..+++|.+++++|++++..+
T Consensus       267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG  329 (358)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            678889999999999999999999999999999999999999999999999999999998754

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.23  E-value=6.6e-11  Score=106.01  Aligned_cols=133  Identities=13%  Similarity=0.110  Sum_probs=97.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHH----HHHHHHHHHHHHHHHHHHH-HhCCCC-CCCcchHHHHHHHHHHH
Q 023719           90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLF----ETVFMRCTVTLILSYLWLR-RSGQPI-FGPMHARNLLVLRALVG  163 (278)
Q Consensus        90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~----~~~~~R~~~a~l~l~~~~~-~~~~~~-~~~~~~~~~~~l~g~~~  163 (278)
                      ..|..++++++++|+.+.+..|... .+.++.    ....+.++...+.+..+.. ..+... ....+.+......++..
T Consensus       143 ~~g~~~~l~aal~~a~~~i~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  221 (281)
T TIGR03340       143 RKAYAWALAAALGTAIYSLSDKAAA-LGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMI  221 (281)
T ss_pred             hhHHHHHHHHHHHHHHhhhhccccc-cchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHH
Confidence            4688899999999999999998753 334432    2233333333222222222 222211 12233445566777778


Q ss_pred             HHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHh
Q 023719          164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI  223 (278)
Q Consensus       164 ~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li  223 (278)
                      .+++.+|++++++.+++.++.+.+++|+++.+++++++||+++..+++|.+++++|++++
T Consensus       222 ~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~  281 (281)
T TIGR03340       222 GGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL  281 (281)
T ss_pred             HHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence            889999999999999999999999999999999999999999999999999999999863

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.18  E-value=2.3e-09  Score=96.96  Aligned_cols=137  Identities=15%  Similarity=0.151  Sum_probs=99.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHHHHHHHHH-HhCCC------CCCCcchHHHHHHH
Q 023719           90 YSGLMCMALSSTIYFFMQVISDVFMVQSIP---LFETVFMRCTVTLILSYLWLR-RSGQP------IFGPMHARNLLVLR  159 (278)
Q Consensus        90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~---p~~~~~~R~~~a~l~l~~~~~-~~~~~------~~~~~~~~~~~~l~  159 (278)
                      ..|.+++++++++|+.+.+..|... +..+   .....++-..++.+.+..... ..+..      ...+...+..++..
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  220 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIM-SHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYL  220 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-cccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence            4699999999999999999999864 3222   233344444444433332222 12111      11122334444444


Q ss_pred             H-HHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccc
Q 023719          160 A-LVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI  227 (278)
Q Consensus       160 g-~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~  227 (278)
                      + +...+++.+|++++++.++.+++.+.+++|+++.++++++++|+++..+++|.+++++|+++...+.
T Consensus       221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~  289 (299)
T PRK11453        221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL  289 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence            4 5555789999999999999999999999999999999999999999999999999999998876544

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.09  E-value=4.4e-09  Score=94.96  Aligned_cols=134  Identities=16%  Similarity=0.188  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCcchHHHHHHHHHHHHHHHHHHH
Q 023719           94 MCMALSSTIYFFMQVISDVFMVQS-IPLFETVFMRCTVTLILSYLWLRRSGQP-IFGPMHARNLLVLRALVGFLSLFSFV  171 (278)
Q Consensus        94 l~~l~aa~~~~~~~v~~k~~~~~~-~~p~~~~~~R~~~a~l~l~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~  171 (278)
                      +++++++++|+.+.+..|....+. .+......+-..++.+.+.......... ...+...+...+..|+...+++.+|+
T Consensus       152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~  231 (296)
T PRK15430        152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFT  231 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999863111 1223333333333333322211100000 01111223445556767779999999


Q ss_pred             HHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccc
Q 023719          172 YSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI  227 (278)
Q Consensus       172 ~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~  227 (278)
                      +++++.+++.++.+.+++|+++.++++++++|+++..+++|.+++++|+.++...+
T Consensus       232 ~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~  287 (296)
T PRK15430        232 AAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA  287 (296)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998877543

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.07  E-value=3.1e-09  Score=96.13  Aligned_cols=137  Identities=13%  Similarity=0.143  Sum_probs=104.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc---------c---hHH
Q 023719           89 RYSGLMCMALSSTIYFFMQVISDVFMVQ--SIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPM---------H---ARN  154 (278)
Q Consensus        89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~--~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~---------~---~~~  154 (278)
                      +..|.+++++++++|+++.+..|... +  ++++.++..+.+..+.+++.++....+.......         .   .+.
T Consensus       143 ~~~G~~~~l~a~~~~a~~~v~~k~~~-~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (302)
T TIGR00817       143 NWAGFLSAMISNITFVSRNIFSKKAM-TIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYT  221 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHH
Confidence            35699999999999999999999975 5  7899999999999888888777553321110000         0   011


Q ss_pred             HHHHHHH-HHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcc
Q 023719          155 LLVLRAL-VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR  226 (278)
Q Consensus       155 ~~~l~g~-~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~  226 (278)
                      ..+..++ .....+.+++++++++++..+++..+..|++++++++++++|+++..+++|.+++++|+++....
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~  294 (302)
T TIGR00817       222 VSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRV  294 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            1112222 11222346778999999999999999999999999999999999999999999999999887643

specificities overlap.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.05  E-value=1.7e-08  Score=89.36  Aligned_cols=134  Identities=20%  Similarity=0.278  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH-HHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHH-HHH
Q 023719           90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVF-MRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGF-LSL  167 (278)
Q Consensus        90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~-~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~  167 (278)
                      ..|.+++++++++|+.+.+..|...  ..++....+ +.+.....+.......... .....+.+......|+.+. +++
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~  229 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFFLSGFG-APILSRAWLLLLYLGVFSTGLAY  229 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHhcccc-ccCCHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999864  567766666 4443222222222222221 2223445666777777776 699


Q ss_pred             HHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcc
Q 023719          168 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR  226 (278)
Q Consensus       168 ~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~  226 (278)
                      .++++++++.+++.++.+.++.|++..++++++++|+++..+++|..+++.|+.+....
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         230 LLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999988654

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.99  E-value=1.1e-08  Score=92.28  Aligned_cols=128  Identities=18%  Similarity=0.234  Sum_probs=102.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH----HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHH
Q 023719           90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCT----VTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFL  165 (278)
Q Consensus        90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~----~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  165 (278)
                      .+|++++++++++++.+.+..|..   +.+|.+..+....    .+.++..+.  ++. +... .+..+..++.|++..+
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~-~~~~-~~~~~~~~~~Gi~~~i  223 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH--ILA-KPLK-KYAILLNILPGLMWGI  223 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH--hcc-cchH-HHHHHHHHHHHHHHHH
Confidence            679999999999999999999984   4888888665554    333333333  111 1122 2233445558888888


Q ss_pred             HHHHHHHHhh-cCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHH----HHHHHHHHHhHHhh
Q 023719          166 SLFSFVYSIQ-RLPLSQATVLSFTAPIMASIAARIILREKLKIAEI----GGLALSFFGVLFIF  224 (278)
Q Consensus       166 ~~~~~~~al~-~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~----~gi~l~~~Gv~li~  224 (278)
                      ++.+|+.+.+ +.+++.+.++.+..|+..++++++++||+.+++++    +|.++++.|+.++.
T Consensus       224 a~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       224 GNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            9999999999 99999999999999999999999999999999999    99999999998864

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.90  E-value=1.1e-07  Score=77.10  Aligned_cols=131  Identities=21%  Similarity=0.273  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc------CCCHHHHHHHHHHHHHHHHHHHHHHhCCCC--------CC-----Ccch
Q 023719           92 GLMCMALSSTIYFFMQVISDVFMVQ------SIPLFETVFMRCTVTLILSYLWLRRSGQPI--------FG-----PMHA  152 (278)
Q Consensus        92 g~l~~l~aa~~~~~~~v~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~--------~~-----~~~~  152 (278)
                      |.++++.+.++.++..+..|....+      ..++.++..+-...+.+++.+.....+...        ..     ..+.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            5788999999999999999997644      689999999999999988887654332211        00     2244


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHH
Q 023719          153 RNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLF  222 (278)
Q Consensus       153 ~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~l  222 (278)
                      +..++..|++.+..+.+.|..++++++-..+++...-.+++.++++++++|+++..+++|++++++|+++
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            5566777888888888999999999999999999999999999999999999999999999999999875

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.90  E-value=8.4e-08  Score=74.21  Aligned_cols=65  Identities=15%  Similarity=0.161  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhc
Q 023719          161 LVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR  225 (278)
Q Consensus       161 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~  225 (278)
                      ++...++.++..++++.|.+.|..+.++.++++++++++++|||++.++++|+.++++|++++..
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            44456788899999999999999999999999999999999999999999999999999988753

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.88  E-value=1.2e-07  Score=87.66  Aligned_cols=135  Identities=10%  Similarity=0.204  Sum_probs=98.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCHHHHHHHHHHHHHHHHHHHHH-HhCCC---C------CCCcchH
Q 023719           90 YSGLMCMALSSTIYFFMQVISDVFMVQ------SIPLFETVFMRCTVTLILSYLWLR-RSGQP---I------FGPMHAR  153 (278)
Q Consensus        90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~-~~~~~---~------~~~~~~~  153 (278)
                      ..|.+++++++++|++..+..|....+      ..++.++..+-..++.++++++.. .....   .      ......+
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            459999999999999999999997632      356777776667788877777654 22110   0      0001011


Q ss_pred             HHHHHHHHHHHHHHHH----HHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719          154 NLLVLRALVGFLSLFS----FVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  224 (278)
Q Consensus       154 ~~~~l~g~~~~~~~~~----~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~  224 (278)
                      ..++...+...+.+.+    -|++++++++..+++...+.|+++.++++++++|+++..+++|.+++++|+++..
T Consensus       273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS  347 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence            1122223333344444    4579999999999999999999999999999999999999999999999998753

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=98.88  E-value=2.3e-08  Score=90.73  Aligned_cols=121  Identities=14%  Similarity=0.126  Sum_probs=96.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccc
Q 023719          150 MHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILT  229 (278)
Q Consensus       150 ~~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~  229 (278)
                      ++..+..+..+.+-+.+.+.+-.|+.+++++..+++..+.-+|+..++.++-.||+++.+.++.++.+.||+++...+..
T Consensus       156 ~~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~  235 (416)
T KOG2765|consen  156 TQTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSK  235 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccc
Confidence            44566677777888889999999999999999999999999999999999999999999999999999999999876432


Q ss_pred             c----ccc----hhhHHHHHHHHHHHHHHHhhhhhccC-CchhHHHHHHH
Q 023719          230 T----QGR----EVSLQKLFYYAKNGFHAYVNSQVFSG-ETRFICAYVAI  270 (278)
Q Consensus       230 ~----~~~----~~~~g~l~al~~A~~~i~~r~~~~~~-~~~~i~~y~~l  270 (278)
                      .    ...    +..++++.++.||.|.++.||...++ .-..+-.++..
T Consensus       236 ~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGf  285 (416)
T KOG2765|consen  236 QNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGF  285 (416)
T ss_pred             ccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHH
Confidence            1    111    33445555666999999999988776 34444444433

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.87  E-value=8.8e-08  Score=82.80  Aligned_cols=132  Identities=14%  Similarity=0.066  Sum_probs=108.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHH-HHH
Q 023719           89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGF-LSL  167 (278)
Q Consensus        89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~  167 (278)
                      +..|..+++.++.||+.+-+..|.+. ...+.-.-+..-+.+++++.+++-..+.......+.....-+..++++. +-|
T Consensus       146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g-~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPY  224 (292)
T COG5006         146 DPVGVALALGAGACWALYIVLGQRAG-RAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPY  224 (292)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHcchhc-ccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccch
Confidence            47899999999999999999999975 4566667777888999999998877665544433344444444455444 678


Q ss_pred             HHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhH
Q 023719          168 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVL  221 (278)
Q Consensus       168 ~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~  221 (278)
                      .+-..+++++|...=+++.+++|.+.++.++++++|+++..||+++.+++++..
T Consensus       225 sLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa  278 (292)
T COG5006         225 SLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA  278 (292)
T ss_pred             HHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            889999999999999999999999999999999999999999999998887764

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.86  E-value=1.4e-07  Score=74.81  Aligned_cols=121  Identities=21%  Similarity=0.194  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 023719           91 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSF  170 (278)
Q Consensus        91 ~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  170 (278)
                      .|+++++.+.++-+...++.|... ++.+..+.... .. ..+..      .       ......+.++.++..+++.+|
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~-~~~g~~~~~~~-~~-~~~~~------~-------~~p~~~i~lgl~~~~la~~~w   65 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGM-SRLPLLSHAWD-FI-AALLA------F-------GLALRAVLLGLAGYALSMLCW   65 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHH-hhCCCccchhH-HH-HHHHH------H-------hccHHHHHHHHHHHHHHHHHH
Confidence            378899999999999999999976 44444332221 10 00000      0       011234566666777899999


Q ss_pred             HHHhhcCchHHHHHHHhhHHHHHHHHHHH--HhcCCCcHHHHHHHHHHHHHhHHhhccc
Q 023719          171 VYSIQRLPLSQATVLSFTAPIMASIAARI--ILREKLKIAEIGGLALSFFGVLFIFRRI  227 (278)
Q Consensus       171 ~~al~~~~~~~a~~l~~~~Pl~~~lla~l--~l~Er~~~~~~~gi~l~~~Gv~li~~~~  227 (278)
                      .+++++.|++.|..+.+..+.++.+.++.  ++||+++..+++|++++++|++++..++
T Consensus        66 ~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         66 LKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            99999999999999999999999888885  8999999999999999999999987543

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.84  E-value=6.8e-07  Score=80.99  Aligned_cols=155  Identities=12%  Similarity=0.092  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHH
Q 023719          120 LFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARI  199 (278)
Q Consensus       120 p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l  199 (278)
                      |..+.+..+....+.........+.. ..++..++.....+++..++..+-..|++++|...-.++-...|+++++++++
T Consensus        32 ~~~lt~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l  110 (303)
T PF08449_consen   32 PLFLTFVQFAFNALFSFILLSLFKFP-KSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVL  110 (303)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcccc-CCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHH
Confidence            78888999888887766655544412 22334456667778888899999999999999999999999999999999999


Q ss_pred             HhcCCCcHHHHHHHHHHHHHhHHhhcccccccc----c--hhhHHHHHH----HHHHHHHHHhhhhhcc--CCchhHHHH
Q 023719          200 ILREKLKIAEIGGLALSFFGVLFIFRRILTTQG----R--EVSLQKLFY----YAKNGFHAYVNSQVFS--GETRFICAY  267 (278)
Q Consensus       200 ~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~----~--~~~~g~l~a----l~~A~~~i~~r~~~~~--~~~~~i~~y  267 (278)
                      ++|+|.++++++++++..+|+++....+.....    .  ....|+++.    ++.|...++.++..++  .++...++|
T Consensus       111 ~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy  190 (303)
T PF08449_consen  111 ILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFY  190 (303)
T ss_pred             hcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            999999999999999999999998755432211    1  111244332    3367888888888654  456689999


Q ss_pred             HHHHHHHh
Q 023719          268 VAIDTSKI  275 (278)
Q Consensus       268 ~~l~~~li  275 (278)
                      .++++.++
T Consensus       191 ~n~~~~~~  198 (303)
T PF08449_consen  191 TNLFSLPF  198 (303)
T ss_pred             HHHHHHHH
Confidence            99887764

; GO: 0055085 transmembrane transport

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.49  E-value=3e-06  Score=74.98  Aligned_cols=121  Identities=18%  Similarity=0.239  Sum_probs=93.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHH
Q 023719           87 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLS  166 (278)
Q Consensus        87 ~~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  166 (278)
                      ++..+|++..+++.+.+..+.++.|.   .++++.+..+-..+--.+.-..+....++..+ .++ -+.-++.|++-.++
T Consensus       134 ~~~~kgi~~Ll~stigy~~Y~~~~~~---~~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~~-~k~-~~~nil~G~~w~ig  208 (269)
T PF06800_consen  134 SNMKKGILALLISTIGYWIYSVIPKA---FHVSGWSAFLPQAIGMLIGAFIFNLFSKKPFF-EKK-SWKNILTGLIWGIG  208 (269)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHh---cCCChhHhHHHHHHHHHHHHHHHhhccccccc-ccc-hHHhhHHHHHHHHH
Confidence            34578999999999999999999998   46788887775544333333333332222222 233 34558889999999


Q ss_pred             HHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHH
Q 023719          167 LFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGG  212 (278)
Q Consensus       167 ~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~g  212 (278)
                      ..+++.+.+....+.+-.+..+.+++..+.+.+++||+=+++++..
T Consensus       209 nl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~  254 (269)
T PF06800_consen  209 NLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIY  254 (269)
T ss_pred             HHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHH
Confidence            9999999999999999999999999999999999999999987653

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.40  E-value=7.7e-06  Score=71.97  Aligned_cols=111  Identities=15%  Similarity=0.097  Sum_probs=87.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccc
Q 023719          150 MHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILT  229 (278)
Q Consensus       150 ~~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~  229 (278)
                      +++.....+=+++..+...+.|.++++++++.=.++..+-.+++++++++++|+|++++||+++++.++|+.++-..+..
T Consensus        14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~   93 (244)
T PF04142_consen   14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ   93 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence            34455566667788889999999999999999999999999999999999999999999999999999999988644332


Q ss_pred             c----c---------cchhhHHHHHH----HHHHHHHHHhhhhhccCC
Q 023719          230 T----Q---------GREVSLQKLFY----YAKNGFHAYVNSQVFSGE  260 (278)
Q Consensus       230 ~----~---------~~~~~~g~l~a----l~~A~~~i~~r~~~~~~~  260 (278)
                      .    .         ......|.++.    +..++..++..+..++.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~  141 (244)
T PF04142_consen   94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN  141 (244)
T ss_pred             ccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            2    0         11233554433    347889999998877653

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.37  E-value=1.4e-05  Score=73.17  Aligned_cols=138  Identities=19%  Similarity=0.119  Sum_probs=105.2

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH-HhCCC---CCCCcchHHHHHHHHHH
Q 023719           87 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLR-RSGQP---IFGPMHARNLLVLRALV  162 (278)
Q Consensus        87 ~~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~-~~~~~---~~~~~~~~~~~~l~g~~  162 (278)
                      +++.+|.++++++++++|.+.+.-+... .+.+..+...+-.+++.++..+... .++..   ...+.+....++...++
T Consensus       164 ~~~i~GDll~l~~a~lya~~nV~~E~~v-~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~  242 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAVSNVLEEKLV-KKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC  242 (334)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence            3557899999999999999999999976 7889888887777777777665433 22211   11122233333444444


Q ss_pred             HHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhc
Q 023719          163 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR  225 (278)
Q Consensus       163 ~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~  225 (278)
                      .+..+.+.-..++..++....+=.-+..+++++++.+++|+++++..++|.+++.+|.++...
T Consensus       243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~  305 (334)
T PF06027_consen  243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNL  305 (334)
T ss_pred             HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEc
Confidence            555566666788888888888878899999999999999999999999999999999988753

Some of the sequences in this family are annotated as putative membrane proteins.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.27  E-value=5.6e-05  Score=68.49  Aligned_cols=136  Identities=19%  Similarity=0.243  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHHH--hCCCC------CCCcchHHHHHHHHH
Q 023719           91 SGLMCMALSSTIYFFMQVISDVFMV-QSIPLFETVFMRCTVTLILSYLWLRR--SGQPI------FGPMHARNLLVLRAL  161 (278)
Q Consensus        91 ~g~l~~l~aa~~~~~~~v~~k~~~~-~~~~p~~~~~~R~~~a~l~l~~~~~~--~~~~~------~~~~~~~~~~~l~g~  161 (278)
                      .|+++++++.++-|...+..+.... .+.++.+.+++-..++.++..+....  .+...      ...+..+..+++..+
T Consensus       154 ~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~  233 (303)
T PF08449_consen  154 LGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL  233 (303)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence            3999999999999999999988753 57889999999999988877665544  22211      122335667778888


Q ss_pred             HHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcc
Q 023719          162 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR  226 (278)
Q Consensus       162 ~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~  226 (278)
                      .+.++..+.++-+++.++-..+++..+--+++.+++.++++++++..+|.|+++.+.|..+-..+
T Consensus       234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~  298 (303)
T PF08449_consen  234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYA  298 (303)
T ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHh
Confidence            88899988889999999999999999999999999999999999999999999999999876543

; GO: 0055085 transmembrane transport

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.19  E-value=1.1e-05  Score=73.10  Aligned_cols=119  Identities=21%  Similarity=0.201  Sum_probs=85.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHH
Q 023719           87 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLS  166 (278)
Q Consensus        87 ~~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  166 (278)
                      .+...|++++++++++.+....+.|.... ..+.   .-.|-            .++.....+++.|+   .+-+...++
T Consensus         3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~-r~~~---~~~~~------------~~~~~~~l~~~~W~---~G~~~~~~g   63 (300)
T PF05653_consen    3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHL-RLPR---GSLRA------------GSGGRSYLRRPLWW---IGLLLMVLG   63 (300)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhc---ccccc------------cchhhHHHhhHHHH---HHHHHHhcc
Confidence            45578999999999999999999998541 1110   00000            00000000111122   222334567


Q ss_pred             HHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719          167 LFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  224 (278)
Q Consensus       167 ~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~  224 (278)
                      ..+.+.|+.+.|.+..+.+..+.-++.++++.+++|||++++++.|..++++|+.+++
T Consensus        64 ~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv  121 (300)
T PF05653_consen   64 EILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV  121 (300)
T ss_pred             hHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence            7788899999999999999999999999999999999999999999999999998765

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=98.16  E-value=0.0001  Score=56.70  Aligned_cols=70  Identities=19%  Similarity=0.169  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCchHHHHHH-HhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHh
Q 023719          154 NLLVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI  223 (278)
Q Consensus       154 ~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li  223 (278)
                      ...+...+...++++++..+++++|.+.|=.+ ....-+.+++.+++++||+++..+++|+.++++|++.+
T Consensus        36 ~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         36 IYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            33455556666788889999999999999655 55899999999999999999999999999999999875

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.15  E-value=0.0002  Score=63.51  Aligned_cols=128  Identities=16%  Similarity=0.218  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCcchHHHHHHHHHHHHHHHHHHH
Q 023719           96 MALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPI----FGPMHARNLLVLRALVGFLSLFSFV  171 (278)
Q Consensus        96 ~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~  171 (278)
                      .+.-++.|+.++.+=|.   -++++.+-..+-.+.-.++.+.+........    ......+.+++..|....+...+|.
T Consensus       153 al~la~sf~~Ygl~RK~---~~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~  229 (293)
T COG2962         153 ALALALSFGLYGLLRKK---LKVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFA  229 (293)
T ss_pred             HHHHHHHHHHHHHHHHh---cCCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHH
Confidence            34456678888888777   3677777777766665555544443322221    1345667888999999999999999


Q ss_pred             HHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcc
Q 023719          172 YSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR  226 (278)
Q Consensus       172 ~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~  226 (278)
                      .|-+++|.+.-..+.|.+|.+..+++.++++|+++..|+.+-+++-+|+++....
T Consensus       230 ~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d  284 (293)
T COG2962         230 AAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID  284 (293)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999887643

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.15  E-value=0.00064  Score=61.89  Aligned_cols=168  Identities=14%  Similarity=0.113  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHHHHHHHHHhC-----CCC-------CCCcchHHHH
Q 023719           92 GLMCMALSSTIYFFMQVISDVFMVQS---IPLFETVFMRCTVTLILSYLWLRRSG-----QPI-------FGPMHARNLL  156 (278)
Q Consensus        92 g~l~~l~aa~~~~~~~v~~k~~~~~~---~~p~~~~~~R~~~a~l~l~~~~~~~~-----~~~-------~~~~~~~~~~  156 (278)
                      =++.+++..+.++......|+....+   +.|...++.-=++-.++......++.     +..       +..+++...+
T Consensus        16 k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~   95 (345)
T KOG2234|consen   16 KYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKV   95 (345)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHH
Confidence            34566667777888888899975444   56666666665555555554444331     111       1111122233


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcccccc---c--
Q 023719          157 VLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTT---Q--  231 (278)
Q Consensus       157 ~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~---~--  231 (278)
                      .+=+++.++.+.++|.++.+.+++.-.+...+--+-++++..+++|+|++++||.++++-++|+.++-.+....   .  
T Consensus        96 ~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~  175 (345)
T KOG2234|consen   96 SVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSE  175 (345)
T ss_pred             HHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCC
Confidence            33345566666789999999999999999999999999999999999999999999999999999987332211   1  


Q ss_pred             --cchhhHHHHH----HHHHHHHHHHhhhhhccC
Q 023719          232 --GREVSLQKLF----YYAKNGFHAYVNSQVFSG  259 (278)
Q Consensus       232 --~~~~~~g~l~----al~~A~~~i~~r~~~~~~  259 (278)
                        .....+|..+    +...+++.++..++.++.
T Consensus       176 ~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s  209 (345)
T KOG2234|consen  176 SSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS  209 (345)
T ss_pred             CcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence              1123344333    334788899999887653

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=98.11  E-value=2.9e-05  Score=58.97  Aligned_cols=70  Identities=20%  Similarity=0.284  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHHH-HhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719          155 LLVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  224 (278)
Q Consensus       155 ~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~  224 (278)
                      ..++.-++...++.++-.+++++|.+.|=.+ ....-+.+++.++++|+|+++..+++++.++++|++.+-
T Consensus        32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK  102 (106)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence            3455556666788899999999999999555 669999999999999999999999999999999998764

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.10  E-value=3.1e-05  Score=60.55  Aligned_cols=69  Identities=19%  Similarity=0.319  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHHHH-hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhc
Q 023719          157 VLRALVGFLSLFSFVYSIQRLPLSQATVLS-FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR  225 (278)
Q Consensus       157 ~l~g~~~~~~~~~~~~al~~~~~~~a~~l~-~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~  225 (278)
                      ++..++..++++++..+++++|.+.|-.+. .+.-+.+++++++++||+++..+++|+.++++|++++-.
T Consensus        34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            455666668889999999999999997774 689999999999999999999999999999999988753

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=98.10  E-value=0.00021  Score=57.31  Aligned_cols=129  Identities=18%  Similarity=0.272  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCcchHHHHHHHHHHHHHHHHHH
Q 023719           93 LMCMALSSTIYFFMQVISDVFMVQSIP-LFETVFMRCTVTLILSYLWLRRSGQ-PIFGPMHARNLLVLRALVGFLSLFSF  170 (278)
Q Consensus        93 ~l~~l~aa~~~~~~~v~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~  170 (278)
                      +++++++..+-+.+..+.-.+. +..+ |+.-.++-+..+.+++..+....++ .....++..++..++|+++.....+.
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~-~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~   81 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLG-KALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSN   81 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHH
Confidence            5677888888888888877765 5555 9999999999998877766554433 22222334455677999999999999


Q ss_pred             HHHhhcCchHHHHHHHhhHHHHH-HHHHHH----HhcCCCcHHHHHHHHHHHHHhHH
Q 023719          171 VYSIQRLPLSQATVLSFTAPIMA-SIAARI----ILREKLKIAEIGGLALSFFGVLF  222 (278)
Q Consensus       171 ~~al~~~~~~~a~~l~~~~Pl~~-~lla~l----~l~Er~~~~~~~gi~l~~~Gv~l  222 (278)
                      .+.+.+++++.+..+..+.-++. .++..+    .-|++++.+|++|+++.++|+++
T Consensus        82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            99999999999988877555544 445553    35799999999999999999874

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=98.08  E-value=4.4e-05  Score=58.83  Aligned_cols=70  Identities=20%  Similarity=0.216  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHHH-HhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhc
Q 023719          156 LVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR  225 (278)
Q Consensus       156 ~~l~g~~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~  225 (278)
                      .+...++..+++.++..+++++|.+.|-.+ ..+.-+.+++++++++||+++..+++|+.++++|++++-.
T Consensus        33 ~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            344555566788888999999999999766 5589999999999999999999999999999999998853

>PRK11431 multidrug efflux system protein; Provisional

Probab=98.05  E-value=5.6e-05  Score=57.73  Aligned_cols=69  Identities=19%  Similarity=0.271  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHHH-HhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719          156 LVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  224 (278)
Q Consensus       156 ~~l~g~~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~  224 (278)
                      .+...++...+++++..+++++|.+.|=.+ ..+.-+.+++++++++||+++..+++|+.++++|++.+-
T Consensus        32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            344455666788889999999999999655 559999999999999999999999999999999998863

>TIGR00688 rarD rarD protein

Probab=98.00  E-value=0.00019  Score=63.13  Aligned_cols=104  Identities=17%  Similarity=0.243  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCC---CCCCcchHHHHHHHHHHHHHHHHHH
Q 023719           94 MCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQP---IFGPMHARNLLVLRALVGFLSLFSF  170 (278)
Q Consensus        94 l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~  170 (278)
                      .++++++++|+.+.+..|...  ..+..+....-. ...++...........   .....+.|..++..|++..+++.++
T Consensus       149 ~~~l~aa~~~a~~~i~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~  225 (256)
T TIGR00688       149 WEALVLAFSFTAYGLIRKALK--NTDLAGFCLETL-SLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLLAF  225 (256)
T ss_pred             HHHHHHHHHHHHHHHHHhhcC--CCCcchHHHHHH-HHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999964  223333222221 1111221111111111   1122235777777788888999999


Q ss_pred             HHHhhcCchHHHHHHHhhHHHHHHHHHHHH
Q 023719          171 VYSIQRLPLSQATVLSFTAPIMASIAARII  200 (278)
Q Consensus       171 ~~al~~~~~~~a~~l~~~~Pl~~~lla~l~  200 (278)
                      ++++++.+++.++.+.+++|+++++++.+.
T Consensus       226 ~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       226 VIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.96  E-value=3.2e-05  Score=59.63  Aligned_cols=110  Identities=12%  Similarity=0.090  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 023719           97 ALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQR  176 (278)
Q Consensus        97 l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~al~~  176 (278)
                      ++.+++||..+.+.|... .+.++..-.. |.......++              ..|++ .+--+++..+...||+.+..
T Consensus         2 l~Vg~~WG~Tnpfik~g~-~~~~~~~~~~-~~~~~~~~Ll--------------~n~~y-~ipf~lNq~GSv~f~~~L~~   64 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGS-SGLEKVKASL-QLLQEIKFLL--------------LNPKY-IIPFLLNQSGSVLFFLLLGS   64 (113)
T ss_pred             eeehHHhcCchHHHHHHH-hhcCCccchH-HHHHHHHHHH--------------HhHHH-HHHHHHHHHHHHHHHHHHhc
Confidence            346789999999999976 4443322221 3222111110              12333 33445566788899999999


Q ss_pred             CchHHHHHHH-hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHh
Q 023719          177 LPLSQATVLS-FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI  223 (278)
Q Consensus       177 ~~~~~a~~l~-~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li  223 (278)
                      .+.+.+..+. .+.=+|+++.++++.+|..+++.++|++++++|+.+.
T Consensus        65 ~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   65 ADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             CCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            9999999995 6888999999988888888999999999999999764

Many members are annotated as potential transmembrane proteins.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.96  E-value=0.00058  Score=62.83  Aligned_cols=136  Identities=10%  Similarity=-0.002  Sum_probs=94.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH-HHHHHHHH---HHHHHhC---CCCCCCcchHHHHHHH
Q 023719           87 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRC-TVTLILSY---LWLRRSG---QPIFGPMHARNLLVLR  159 (278)
Q Consensus        87 ~~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~-~~a~l~l~---~~~~~~~---~~~~~~~~~~~~~~l~  159 (278)
                      ++...|+++.+++++|||...+-.|..  ...+ +|..+.-. +++.++..   .....+.   .....+.+.+...++.
T Consensus         3 ~~~~~G~~~~~i~~~~~GS~~~p~K~~--k~w~-wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~   79 (345)
T PRK13499          3 NAIILGIIWHLIGGASSGSFYAPFKKV--KKWS-WETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF   79 (345)
T ss_pred             chhHHHHHHHHHHHHHhhccccccccc--CCCc-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence            345679999999999999999999993  3333 33332211 11111111   0110100   0011234567778889


Q ss_pred             HHHHHHHHHHHHHHhhcCchHHHHHHH-hhHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHhHHhhc
Q 023719          160 ALVGFLSLFSFVYSIQRLPLSQATVLS-FTAPIMASIAARIILREKL-------KIAEIGGLALSFFGVLFIFR  225 (278)
Q Consensus       160 g~~~~~~~~~~~~al~~~~~~~a~~l~-~~~Pl~~~lla~l~l~Er~-------~~~~~~gi~l~~~Gv~li~~  225 (278)
                      |++-.+++..++.++++..++.+..+. .+.-++.+++..++++|-.       ...-++|++++++|+++...
T Consensus        80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~  153 (345)
T PRK13499         80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR  153 (345)
T ss_pred             HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998874 4889999999999998754       23467889999999999876

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.88  E-value=4.7e-05  Score=69.11  Aligned_cols=162  Identities=12%  Similarity=-0.023  Sum_probs=118.1

Q ss_pred             HHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCchHHHH
Q 023719          108 VISDVFMV--QSIPLFETVFMRCTVTLILSYLWLRRSGQPI--FGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQAT  183 (278)
Q Consensus       108 v~~k~~~~--~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~  183 (278)
                      +..|+...  +---|..+..+++..+.+.+......+..+.  ...+..++.++-.|++..++..+-..++++.|++-.-
T Consensus        34 ~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q  113 (316)
T KOG1441|consen   34 ILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQ  113 (316)
T ss_pred             EeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHH
Confidence            34466653  2223667777777776666655443332222  1234567778888999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccchhhHHHHHHH----HHHHHHHHhhhhhc--
Q 023719          184 VLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYY----AKNGFHAYVNSQVF--  257 (278)
Q Consensus       184 ~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~g~l~al----~~A~~~i~~r~~~~--  257 (278)
                      ++-.++|+++.++++++.+|+.+...++.++.+..||.+-...+...    +..|.+.++    ..+...|+.+++.+  
T Consensus       114 ~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~f----n~~G~i~a~~s~~~~al~~I~~~~ll~~~  189 (316)
T KOG1441|consen  114 TIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSF----NLFGFISAMISNLAFALRNILSKKLLTSK  189 (316)
T ss_pred             HHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccc----cHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            99999999999999999999999999999999999998877644332    234444443    37889999998873  


Q ss_pred             --cCCchhHHHHHHHHHH
Q 023719          258 --SGETRFICAYVAIDTS  273 (278)
Q Consensus       258 --~~~~~~i~~y~~l~~~  273 (278)
                        +.++.....|.+-++.
T Consensus       190 ~~~~~~~~ll~y~ap~s~  207 (316)
T KOG1441|consen  190 GESLNSMNLLYYTAPISL  207 (316)
T ss_pred             ccccCchHHHHHhhhHHH
Confidence              2466777777665544

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.80  E-value=0.0017  Score=58.43  Aligned_cols=182  Identities=14%  Similarity=0.129  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc-CCCH-HHHHHHHHHHHHHHHHHHHHHhCCCCC--CCcchHHHHHHHHHHHHHHHH
Q 023719           93 LMCMALSSTIYFFMQVISDVFMVQ-SIPL-FETVFMRCTVTLILSYLWLRRSGQPIF--GPMHARNLLVLRALVGFLSLF  168 (278)
Q Consensus        93 ~l~~l~aa~~~~~~~v~~k~~~~~-~~~p-~~~~~~R~~~a~l~l~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~  168 (278)
                      +..++.-++.=.++.+..|.+... +.|. +.+...+.+...+.+...-+ .|--..  ..++..+..+-..++......
T Consensus        14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~-~~lv~~~~l~~~~~kk~~P~~~lf~~~i~   92 (314)
T KOG1444|consen   14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKR-LGLVNFRPLDLRTAKKWFPVSLLFVGMLF   92 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH-hceeecCCcChHHHHHHccHHHHHHHHHH
Confidence            344444444445566677877522 2332 33334777666555554332 221111  122233333444444555555


Q ss_pred             HHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccchhhHHHHHHHHHHHH
Q 023719          169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYYAKNGF  248 (278)
Q Consensus       169 ~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~g~l~al~~A~~  248 (278)
                      .-..+++++++..-+++-...|+++++...+++|.|++...|.++....+|......++.+.+..+..+-..-.+.-+.+
T Consensus        93 t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~  172 (314)
T KOG1444|consen   93 TGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAF  172 (314)
T ss_pred             HccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHH
Confidence            56679999999999999999999999999999999999999999999999998888777655443444444555557788


Q ss_pred             HHHhhhhhccC--CchhHHHHHHHHHHHh
Q 023719          249 HAYVNSQVFSG--ETRFICAYVAIDTSKI  275 (278)
Q Consensus       249 ~i~~r~~~~~~--~~~~i~~y~~l~~~li  275 (278)
                      .+..|+..+..  ....+++|.++....+
T Consensus       173 ~v~~kk~vd~~~l~~~~lv~yNnl~~L~~  201 (314)
T KOG1444|consen  173 VVYVKKSVDSANLNKFGLVFYNNLLSLPP  201 (314)
T ss_pred             HHHHHHhhccccccceeEEeehhHHHHHH
Confidence            89988876443  3445777777766543

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.76  E-value=1.9e-05  Score=69.13  Aligned_cols=134  Identities=13%  Similarity=0.104  Sum_probs=103.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCcchHHHHHHHHHHHHHHHH
Q 023719           90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQP-IFGPMHARNLLVLRALVGFLSLF  168 (278)
Q Consensus        90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~  168 (278)
                      ..|.+.++.++++-+...++.|+.. ...+......+-.+++.+.-++.+..-+.. .....++|++++..|+++++++.
T Consensus       190 ~~gt~aai~s~lf~asvyIilR~iG-k~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQI  268 (346)
T KOG4510|consen  190 IPGTVAAISSVLFGASVYIILRYIG-KNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQI  268 (346)
T ss_pred             CCchHHHHHhHhhhhhHHHHHHHhh-ccccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHH
Confidence            4578888889999999999999976 556655444444444444433333222221 12234567788889999999999


Q ss_pred             HHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719          169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  224 (278)
Q Consensus       169 ~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~  224 (278)
                      +...++|.--++..++..++.-+++.++-.+|+||.++++.|.|++++....+.+.
T Consensus       269 llTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a  324 (346)
T KOG4510|consen  269 LLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVA  324 (346)
T ss_pred             HHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHH
Confidence            99999999999999999999999999999999999999999999888776666554

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=97.76  E-value=0.00014  Score=61.10  Aligned_cols=102  Identities=10%  Similarity=0.064  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccchhhHHHHHHH
Q 023719          164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGREVSLQKLFYY  243 (278)
Q Consensus       164 ~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~g~l~al  243 (278)
                      ....+.|..|++.+++++++.+....-.|+-+++++.+|+|+...++++.++++.|++++...+...  .....|+.+++
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~--a~e~iGi~~AV  141 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH--ADEIIGIACAV  141 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh--hhhhhhHHHHH
Confidence            4567889999999999999999999999999999999999999999999999999999887655333  23456666655


Q ss_pred             H----HHHHHHHhhhhhccCCchhHHHH
Q 023719          244 A----KNGFHAYVNSQVFSGETRFICAY  267 (278)
Q Consensus       244 ~----~A~~~i~~r~~~~~~~~~~i~~y  267 (278)
                      .    .|.|-+..|+.....+-....-+
T Consensus       142 ~SA~~aAlYKV~FK~~iGnAn~Gdaa~F  169 (290)
T KOG4314|consen  142 GSAFMAALYKVLFKMFIGNANFGDAAHF  169 (290)
T ss_pred             HHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence            4    67888888887665544433333

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=97.66  E-value=0.0026  Score=56.34  Aligned_cols=121  Identities=9%  Similarity=0.001  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccc----
Q 023719          154 NLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILT----  229 (278)
Q Consensus       154 ~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~----  229 (278)
                      ...+.=.++-..+..+.|.++.+++++.=..+....-+|+.+++.-+++.+++.++|+|+....+|++.+...+.-    
T Consensus        87 ~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~  166 (372)
T KOG3912|consen   87 VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTD  166 (372)
T ss_pred             ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccC
Confidence            3444567888889999999999999999999999999999999999999999999999999999999888654321    


Q ss_pred             ccc--chhhHHHHHHH----HHHHHHHHhhhhhcc--CCchhHHHHHHHHHHH
Q 023719          230 TQG--REVSLQKLFYY----AKNGFHAYVNSQVFS--GETRFICAYVAIDTSK  274 (278)
Q Consensus       230 ~~~--~~~~~g~l~al----~~A~~~i~~r~~~~~--~~~~~i~~y~~l~~~l  274 (278)
                      ...  .....|.++.+    .-|+.+++=.|..++  .+|...+.|-.+++.+
T Consensus       167 p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v  219 (372)
T KOG3912|consen  167 PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLV  219 (372)
T ss_pred             CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHH
Confidence            111  12334544433    367888888777654  5788899998888744

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.62  E-value=0.0026  Score=56.54  Aligned_cols=147  Identities=10%  Similarity=0.006  Sum_probs=95.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHh-hHHHHHHHH
Q 023719          119 PLFETVFMRCTVTLILSYLWLRRSGQPIFG-PMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIA  196 (278)
Q Consensus       119 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~-~~Pl~~~ll  196 (278)
                      +|.+-.+--.+-+.++-+......+ +.+. ..+.+...++.|++-.+++...|.++++..++++..+.. ..=+.+.++
T Consensus        11 ~~~~Q~lG~t~Gali~alv~~~~~~-p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~   89 (269)
T PF06800_consen   11 KPANQILGTTIGALIFALVVFLFRQ-PAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLI   89 (269)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHH
Confidence            4444444433444443333333332 2222 235677788899999999999999999999999999865 666778999


Q ss_pred             HHHHhcCCCcHHHHH----HHHHHHHHhHHhhcccccccc----chhhHHHHH----HHHHHHHHHHhhhhhccCCchhH
Q 023719          197 ARIILREKLKIAEIG----GLALSFFGVLFIFRRILTTQG----REVSLQKLF----YYAKNGFHAYVNSQVFSGETRFI  264 (278)
Q Consensus       197 a~l~l~Er~~~~~~~----gi~l~~~Gv~li~~~~~~~~~----~~~~~g~l~----al~~A~~~i~~r~~~~~~~~~~i  264 (278)
                      +.++|+|.-+..+++    +++++++|+++....+.....    .....|++.    .+.|-.|.++.|-.  +.++..+
T Consensus        90 gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~--~~~~~~~  167 (269)
T PF06800_consen   90 GVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF--HVSGWSA  167 (269)
T ss_pred             HHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc--CCChhHh
Confidence            999999998877654    888899999888755433321    122223332    33466777776653  3455555


Q ss_pred             HHHH
Q 023719          265 CAYV  268 (278)
Q Consensus       265 ~~y~  268 (278)
                      .+-+
T Consensus       168 ~lPq  171 (269)
T PF06800_consen  168 FLPQ  171 (269)
T ss_pred             HHHH
Confidence            5443

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=97.60  E-value=3e-06  Score=73.55  Aligned_cols=185  Identities=12%  Similarity=0.088  Sum_probs=119.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHH
Q 023719           90 YSGLMCMALSSTIYFFMQVISDVFMVQSIP-LFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLF  168 (278)
Q Consensus        90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  168 (278)
                      +.|+.+.=+-.+|-.........+...+++ |..-.|+-+..-+++-.++...|++..   +..|+.-++.++...=+++
T Consensus        17 li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~---~~~~~hYilla~~DVEaNy   93 (336)
T KOG2766|consen   17 LIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYI---KAKWRHYILLAFVDVEANY   93 (336)
T ss_pred             hheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHH---HHHHHHhhheeEEeecccE
Confidence            344444433334433333333333322232 444455555544455555554444222   1123344555666666666


Q ss_pred             HHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccc----cccchhhHHHHH---
Q 023719          169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILT----TQGREVSLQKLF---  241 (278)
Q Consensus       169 ~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~----~~~~~~~~g~l~---  241 (278)
                      +...|.|+++...+..+-.-.-..+.+++|+|+|-|-++.++.|.+++..||++++..+.-    ..+.+...|..+   
T Consensus        94 ~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~  173 (336)
T KOG2766|consen   94 FVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIA  173 (336)
T ss_pred             EEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEe
Confidence            7778999999999999988777778899999999999999999999999999998754321    222333444332   


Q ss_pred             -HHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHhcC
Q 023719          242 -YYAKNGFHAYVNSQVFSGETRFICAYVAIDTSKIGT  277 (278)
Q Consensus       242 -al~~A~~~i~~r~~~~~~~~~~i~~y~~l~~~lig~  277 (278)
                       +-+||...+.-..+.++.+...++....++|+++++
T Consensus       174 GATlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsa  210 (336)
T KOG2766|consen  174 GATLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISA  210 (336)
T ss_pred             cceeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence             233888888888888888888888888888888764

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.58  E-value=0.00034  Score=52.20  Aligned_cols=60  Identities=20%  Similarity=0.288  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHHH-HhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 023719          157 VLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALS  216 (278)
Q Consensus       157 ~l~g~~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~  216 (278)
                      +....+...++.++..++++.|.+.+-.+ ..+..+.+++.+.+++||+++..+++|+.++
T Consensus        33 ~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   33 ILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             -HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            33444566778889999999999999655 5699999999999999999999999998864

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.43  E-value=0.00058  Score=62.08  Aligned_cols=136  Identities=17%  Similarity=0.286  Sum_probs=104.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHHHHHHH-HHHHHhCCCCC-------CCcchHHHHH
Q 023719           89 RYSGLMCMALSSTIYFFMQVISDVFMV---QSIPLFETVFMRCTVTLILSY-LWLRRSGQPIF-------GPMHARNLLV  157 (278)
Q Consensus        89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~---~~~~p~~~~~~R~~~a~l~l~-~~~~~~~~~~~-------~~~~~~~~~~  157 (278)
                      +..|...++++.+..++..++.|....   ..++++++.....-++...++ |+.........       ...... ..+
T Consensus       161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~-~~~  239 (316)
T KOG1441|consen  161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFL-ILL  239 (316)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhH-HHH
Confidence            467999999999999999999999862   468999999988888888888 76553222111       111112 222


Q ss_pred             HHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhc
Q 023719          158 LRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR  225 (278)
Q Consensus       158 l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~  225 (278)
                      +..++.+..+..-|..+.++++-.=.+....=-+++...++++|+++++..+.+|.+++++|+++-.+
T Consensus       240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~  307 (316)
T KOG1441|consen  240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR  307 (316)
T ss_pred             HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence            23355556667788899999998888888777778889999999999999999999999999988653

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.41  E-value=0.0088  Score=55.14  Aligned_cols=138  Identities=10%  Similarity=0.042  Sum_probs=88.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHH-------HHHHHHhhcCCCHHHHHHHHHH---HHHHHHH-HHHH---HhCCCC-----C
Q 023719           87 GSRYSGLMCMALSSTIYFFMQ-------VISDVFMVQSIPLFETVFMRCT---VTLILSY-LWLR---RSGQPI-----F  147 (278)
Q Consensus        87 ~~~~~g~l~~l~aa~~~~~~~-------v~~k~~~~~~~~p~~~~~~R~~---~a~l~l~-~~~~---~~~~~~-----~  147 (278)
                      .+..||++.++++.+..+...       ...+.....+.++.....-.+.   ++.++.- .+..   ++++..     +
T Consensus       170 ~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~  249 (345)
T PRK13499        170 FNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADF  249 (345)
T ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhc
Confidence            345789999999999999998       5555432245666655554444   3333322 2222   122221     1


Q ss_pred             C-Cc----chHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHH---HH-hhHHHHHHHHHHHHhcCCCc------HHHHHH
Q 023719          148 G-PM----HARNLLVLRALVGFLSLFSFVYSIQRLPLSQATV---LS-FTAPIMASIAARIILREKLK------IAEIGG  212 (278)
Q Consensus       148 ~-~~----~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~---l~-~~~Pl~~~lla~l~l~Er~~------~~~~~g  212 (278)
                      . ++    ++.....+.|+.-.+++.+|+.+-+..+.+.+.+   +. .+..++..+.+. ++||+=+      +.-++|
T Consensus       250 ~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G  328 (345)
T PRK13499        250 SLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLG  328 (345)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHH
Confidence            1 11    2222336677777788888888888887776666   66 566677777776 6999988      455788


Q ss_pred             HHHHHHHhHHhhc
Q 023719          213 LALSFFGVLFIFR  225 (278)
Q Consensus       213 i~l~~~Gv~li~~  225 (278)
                      +++.++|..++..
T Consensus       329 ~vliI~g~~lig~  341 (345)
T PRK13499        329 CVVIILAANIVGL  341 (345)
T ss_pred             HHHHHHHHHHHhh
Confidence            8888888887754

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.30  E-value=0.0051  Score=55.04  Aligned_cols=136  Identities=15%  Similarity=0.164  Sum_probs=109.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHHHHHHHHhCCC------CCCCcchHHHHHHHH
Q 023719           88 SRYSGLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQP------IFGPMHARNLLVLRA  160 (278)
Q Consensus        88 ~~~~g~l~~l~aa~~~~~~~v~~k~~~-~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~------~~~~~~~~~~~~l~g  160 (278)
                      +...|++++...-++=|+.+...+.+. ...++++++.+.-.++..+.-.......+..      ....++.++.+++..
T Consensus       169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s  248 (327)
T KOG1581|consen  169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS  248 (327)
T ss_pred             CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH
Confidence            457799988888887777776665544 2578899999888888777665544433322      113456788899999


Q ss_pred             HHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHh
Q 023719          161 LVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI  223 (278)
Q Consensus       161 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li  223 (278)
                      .++.+++.+.|+-++.-.+-.-++++-+-=++..+++.+.++.+++..+|+|+.+.|.|+.+=
T Consensus       249 ~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~  311 (327)
T KOG1581|consen  249 TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLE  311 (327)
T ss_pred             HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHH
Confidence            999999999999999988888888899999999999999999999999999999999998763

>TIGR00803 nst UDP-galactose transporter

Probab=97.29  E-value=0.004  Score=53.66  Aligned_cols=135  Identities=13%  Similarity=0.114  Sum_probs=85.3

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHh-CCCC--CC-CcchHHHHHHHHHH
Q 023719           88 SRYSGLMCMALSSTIYFFMQVISDVFMVQS-IPLFETVFMRCTVTLILSYLWLRRS-GQPI--FG-PMHARNLLVLRALV  162 (278)
Q Consensus        88 ~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~-~~p~~~~~~R~~~a~l~l~~~~~~~-~~~~--~~-~~~~~~~~~l~g~~  162 (278)
                      +...|..+.+.+.++-+...+..++..... .....-.+.-.+...+......... +...  .. -.+.........+.
T Consensus        82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (222)
T TIGR00803        82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLL  161 (222)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHH
Confidence            345677777777777778888877754221 2211111111111111111111111 1100  00 01112234445566


Q ss_pred             HHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHH
Q 023719          163 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLF  222 (278)
Q Consensus       163 ~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~l  222 (278)
                      ..++..+..+.+++.+...-+....+.++++.+++.++++|+++..+++|+.+.+.|+.+
T Consensus       162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            777778888999999999999999999999999999999999999999999999998753

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=97.24  E-value=0.0039  Score=57.24  Aligned_cols=141  Identities=16%  Similarity=0.087  Sum_probs=100.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHHH---HhCCCCC--CCcchHHHHHHH
Q 023719           88 SRYSGLMCMALSSTIYFFMQVISDVFMVQ---SIPLFETVFMRCTVTLILSYLWLR---RSGQPIF--GPMHARNLLVLR  159 (278)
Q Consensus        88 ~~~~g~l~~l~aa~~~~~~~v~~k~~~~~---~~~p~~~~~~R~~~a~l~l~~~~~---~~~~~~~--~~~~~~~~~~l~  159 (278)
                      +...|.++++++++.+|.+.++.|.-..+   .++--....+-.++..++++|.++   +.+...+  +.......+++.
T Consensus       244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~  323 (416)
T KOG2765|consen  244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN  323 (416)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence            34789999999999999999999986532   244444444445556666664332   2222222  222223334444


Q ss_pred             HHHH-HHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcccc
Q 023719          160 ALVG-FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRIL  228 (278)
Q Consensus       160 g~~~-~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~  228 (278)
                      ++.+ +++-++|.+|.-.+++-.+++-+.+.-..+++.-.++-+.+++...++|.+.+++|-+++..++.
T Consensus       324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~  393 (416)
T KOG2765|consen  324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE  393 (416)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence            4444 47889999999999999988888866666788888888899999999999999999988876654

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.08  E-value=0.051  Score=44.02  Aligned_cols=133  Identities=17%  Similarity=0.197  Sum_probs=91.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHHHHHHHhC-CCCC-CCcchHHHHHHHHHHHHHH
Q 023719           90 YSGLMCMALSSTIYFFMQVISDVFMVQSI-PLFETVFMRCTVTLILSYLWLRRSG-QPIF-GPMHARNLLVLRALVGFLS  166 (278)
Q Consensus        90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~~~-~p~~~~~~R~~~a~l~l~~~~~~~~-~~~~-~~~~~~~~~~l~g~~~~~~  166 (278)
                      ...++..+++..+-.....+.-.+. +.. +|+.-.++-+..+..++..+.+... .+.. ..++..++...+|+++.+.
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~-~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~   82 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLA-RYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIF   82 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhh
Confidence            4567788888888888887776665 333 5888888888888777666554432 2222 1233455667788888777


Q ss_pred             HHHHHHHhhcCchHHHHHH-HhhHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHhHHh
Q 023719          167 LFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIIL----REKLKIAEIGGLALSFFGVLFI  223 (278)
Q Consensus       167 ~~~~~~al~~~~~~~a~~l-~~~~Pl~~~lla~l~l----~Er~~~~~~~gi~l~~~Gv~li  223 (278)
                      ...-.....++.++....+ ..-.-+...++-.+=+    +.+++..+++|+++.++|++++
T Consensus        83 vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~  144 (150)
T COG3238          83 VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA  144 (150)
T ss_pred             hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence            6677777777777776554 4455555566555433    4889999999999999995444

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.77  E-value=0.00066  Score=61.05  Aligned_cols=120  Identities=22%  Similarity=0.176  Sum_probs=88.3

Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHH
Q 023719           86 NGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFL  165 (278)
Q Consensus        86 ~~~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  165 (278)
                      +.+...|.++++.+.++.|...++-|...           .|...       -..+.++...+-.+. +....+-+...+
T Consensus        16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl-----------~r~~~-------~~~ra~~gg~~yl~~-~~Ww~G~ltm~v   76 (335)
T KOG2922|consen   16 SSDNIIGLVLAISSSIFIGSSFILKKKGL-----------KRAGA-------SGLRAGEGGYGYLKE-PLWWAGMLTMIV   76 (335)
T ss_pred             ccCceeeeeehhhccEEEeeehhhhHHHH-----------HHHhh-------hcccccCCCcchhhh-HHHHHHHHHHHH
Confidence            35668899999999999999999988854           12111       001111111111111 111223344557


Q ss_pred             HHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719          166 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  224 (278)
Q Consensus       166 ~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~  224 (278)
                      +-.+.|.|..+.|.+..+.+..+.-++.++++..++|||++....+|.+++++|-.+++
T Consensus        77 Gei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV  135 (335)
T KOG2922|consen   77 GEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV  135 (335)
T ss_pred             HhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence            77888899999999999999999999999999999999999999999999999998876

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=96.54  E-value=0.0065  Score=54.45  Aligned_cols=115  Identities=15%  Similarity=-0.016  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccccc
Q 023719          154 NLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQGR  233 (278)
Q Consensus       154 ~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~~  233 (278)
                      +.+.-.++..+....+-.+++++++.+.=++.-+..++|+.+++.+|-=||+++.-..-+.++.+|+++....+.+..-.
T Consensus        85 r~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~  164 (349)
T KOG1443|consen   85 RRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIE  164 (349)
T ss_pred             HHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeeh
Confidence            34446677777777778899999999999999999999999999887779999999999999999999887655433221


Q ss_pred             hhhHHH----HHHHHHHHHHHHhhhhh-ccCCchhHHHHH
Q 023719          234 EVSLQK----LFYYAKNGFHAYVNSQV-FSGETRFICAYV  268 (278)
Q Consensus       234 ~~~~g~----l~al~~A~~~i~~r~~~-~~~~~~~i~~y~  268 (278)
                      +..+-.    +.++-|+..+.+.|+-. .+.+|...+++.
T Consensus       165 Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l  204 (349)
T KOG1443|consen  165 GFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHL  204 (349)
T ss_pred             hHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHh
Confidence            222211    22333888888888765 556666655553

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.40  E-value=0.21  Score=44.96  Aligned_cols=156  Identities=14%  Similarity=0.061  Sum_probs=104.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHH
Q 023719          119 PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAAR  198 (278)
Q Consensus       119 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~  198 (278)
                      ++.-+.+...+.+.++-..++..+++. ...++.|+.....++.+.++..|-|.|++|++--.-.+-=..=-+=+++++.
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~-~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~  128 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAMLKWWKKE-LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGT  128 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhccccc-CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHH
Confidence            456677777777776665544433333 3344456677888899999999999999998876666655555555688999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHhHHhhcc-cccc---cc-chhhHHHHHHHHH----HHHHHHhhhhhc--cCCchhHHHH
Q 023719          199 IILREKLKIAEIGGLALSFFGVLFIFRR-ILTT---QG-REVSLQKLFYYAK----NGFHAYVNSQVF--SGETRFICAY  267 (278)
Q Consensus       199 l~l~Er~~~~~~~gi~l~~~Gv~li~~~-~~~~---~~-~~~~~g~l~al~~----A~~~i~~r~~~~--~~~~~~i~~y  267 (278)
                      ++.|.|.+..+.+...++-.||.+.... ..++   .+ .+...|.++...+    ++-.....++-+  +.++..+++|
T Consensus       129 Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~  208 (327)
T KOG1581|consen  129 LVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFG  208 (327)
T ss_pred             HHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHH
Confidence            9999999999999999999999775432 2221   11 1334454443331    223333333332  3567889999


Q ss_pred             HHHHHHHh
Q 023719          268 VAIDTSKI  275 (278)
Q Consensus       268 ~~l~~~li  275 (278)
                      .+++.++.
T Consensus       209 vNLf~~i~  216 (327)
T KOG1581|consen  209 VNLFSAIL  216 (327)
T ss_pred             HHHHHHHH
Confidence            99888774

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.40  E-value=0.00027  Score=61.26  Aligned_cols=130  Identities=15%  Similarity=0.137  Sum_probs=90.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHH
Q 023719           88 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSL  167 (278)
Q Consensus        88 ~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  167 (278)
                      +..+|+...+.+.+.+-.+.+..+....++.+.+.--..-++++++.+   ...++.+.  ..+.-..-++-|+.-.++.
T Consensus       149 n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~---~~~~~~~~--~~K~t~~nii~G~~Wa~GN  223 (288)
T COG4975         149 NLKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALIL---GFFKMEKR--FNKYTWLNIIPGLIWAIGN  223 (288)
T ss_pred             hhhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHH---hhcccccc--hHHHHHHHHhhHHHHHhhH
Confidence            346788888888888888877777643244444333333333333322   22222121  2334455678899999999


Q ss_pred             HHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHH----HHHHHHHhHH
Q 023719          168 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGG----LALSFFGVLF  222 (278)
Q Consensus       168 ~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~g----i~l~~~Gv~l  222 (278)
                      ..+++|-+....+.+-.+..+..++..+-+.+++|||-+++++..    ++++.+|..+
T Consensus       224 l~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~  282 (288)
T COG4975         224 LFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAIL  282 (288)
T ss_pred             HHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhh
Confidence            999999999999999999999999999999999999999998654    4444445444

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.24  E-value=0.03  Score=48.60  Aligned_cols=134  Identities=13%  Similarity=0.047  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHHHhCCC------CCCCcchHHHHHHHHHHH
Q 023719           91 SGLMCMALSSTIYFFMQVISDVFMV-QSIPLFETVFMRCTVTLILSYLWLRRSGQP------IFGPMHARNLLVLRALVG  163 (278)
Q Consensus        91 ~g~l~~l~aa~~~~~~~v~~k~~~~-~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~------~~~~~~~~~~~~l~g~~~  163 (278)
                      .|-++.+++-..=|+........-. ..-+.-++.+.-.+.+.+.+..-+...+..      ..+.+..++.+.+.++.+
T Consensus       172 ~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s  251 (337)
T KOG1580|consen  172 FGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIAS  251 (337)
T ss_pred             hHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4667777776666666665544321 122233444444455544443322222110      011234566778889999


Q ss_pred             HHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719          164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  224 (278)
Q Consensus       164 ~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~  224 (278)
                      .+++++.|.-+..-++-..+++..+--+|+.+.+.++++..++.+||+|.++.|.|..+=.
T Consensus       252 ~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  252 CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV  312 (337)
T ss_pred             HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence            9999999999999888888999999999999999999999999999999999999886633

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=95.94  E-value=0.0032  Score=54.76  Aligned_cols=131  Identities=11%  Similarity=0.034  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 023719           92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV  171 (278)
Q Consensus        92 g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  171 (278)
                      +++.+++=++.||....+...   -+-.|.+-..--.+-|.++.+.+++..  .+..+.+.+...++.|++-.+++...|
T Consensus         3 ~~liaL~P~l~WGsip~v~~k---~GG~p~qQ~lGtT~GALifaiiv~~~~--~p~~T~~~~iv~~isG~~Ws~GQ~~Qf   77 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANK---FGGKPYQQTLGTTLGALIFAIIVFLFV--SPELTLTIFIVGFISGAFWSFGQANQF   77 (288)
T ss_pred             hHHHHHHHHHHhcccceeeee---cCCChhHhhhhccHHHHHHHHHHheee--cCccchhhHHHHHHhhhHhhhhhhhhh
Confidence            678889999999998877655   245666666555555555544444432  222344456667788888889999999


Q ss_pred             HHhhcCchHHHHHHHh-hHHHHHHHHHHHHhcCCCcHHHH----HHHHHHHHHhHHhhccc
Q 023719          172 YSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEI----GGLALSFFGVLFIFRRI  227 (278)
Q Consensus       172 ~al~~~~~~~a~~l~~-~~Pl~~~lla~l~l~Er~~~~~~----~gi~l~~~Gv~li~~~~  227 (278)
                      .|+++..+++|..+.. +.=+-+.+++.+.|||..+..++    ++++++++|+.+-...+
T Consensus        78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~  138 (288)
T COG4975          78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQD  138 (288)
T ss_pred             hheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeec
Confidence            9999999999998865 77788899999999999988764    46677777877765443

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.86  E-value=0.095  Score=47.34  Aligned_cols=135  Identities=12%  Similarity=0.157  Sum_probs=104.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHHHhCC--------CCCCCcchHHHHHHHH
Q 023719           90 YSGLMCMALSSTIYFFMQVISDVFMV-QSIPLFETVFMRCTVTLILSYLWLRRSGQ--------PIFGPMHARNLLVLRA  160 (278)
Q Consensus        90 ~~g~l~~l~aa~~~~~~~v~~k~~~~-~~~~p~~~~~~R~~~a~l~l~~~~~~~~~--------~~~~~~~~~~~~~l~g  160 (278)
                      ..|+.+++...+.-+...+..|.-.. .+.+-+.++++-.+.+.+.+.......+.        ..+.....+..+.+.+
T Consensus       156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc  235 (314)
T KOG1444|consen  156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC  235 (314)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence            45899999999999999999998642 46677888899888888877765543332        1122334566778888


Q ss_pred             HHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719          161 LVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  224 (278)
Q Consensus       161 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~  224 (278)
                      +++++-.++-++..+..++..-+++...+=..+.+...++.+++.++...+|+.++++|-++-.
T Consensus       236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~  299 (314)
T KOG1444|consen  236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYS  299 (314)
T ss_pred             HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHh
Confidence            9998888888899998888887777766666677777777789999999999999999887654

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.72  E-value=0.058  Score=46.83  Aligned_cols=153  Identities=11%  Similarity=0.130  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHH
Q 023719          121 FETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARII  200 (278)
Q Consensus       121 ~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~  200 (278)
                      ..++|+++..-.++.=.+...+++......+ -+.-....+...+++..-..|+|+.|--...+--+.-|+=+++++.++
T Consensus        54 laLVf~qC~~N~vfAkvl~~ir~~~~~D~t~-~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~  132 (337)
T KOG1580|consen   54 LALVFFQCTANTVFAKVLFLIRKKTEIDNTP-TKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLF  132 (337)
T ss_pred             HHHHHHHHHHHHHHHHhheeecccccccCCc-chHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhh
Confidence            5566666666555543333323222111111 222333444444566667789999999888888889999999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHHhHHhhcccccccc---chhhHHHHHHHH----HHHHHHHhhhhhcc--CCchhHHHHHHHH
Q 023719          201 LREKLKIAEIGGLALSFFGVLFIFRRILTTQG---REVSLQKLFYYA----KNGFHAYVNSQVFS--GETRFICAYVAID  271 (278)
Q Consensus       201 l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~~---~~~~~g~l~al~----~A~~~i~~r~~~~~--~~~~~i~~y~~l~  271 (278)
                      .|.+-++++..+.+++.+||++.+.......+   ...++|-++-+.    =+.......|+...  .....+++|.++.
T Consensus       133 ~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~Nlw  212 (337)
T KOG1580|consen  133 AHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLW  212 (337)
T ss_pred             hcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHH
Confidence            99999999999999999999998765332211   133445333222    12222333333222  2334567776666


Q ss_pred             HHH
Q 023719          272 TSK  274 (278)
Q Consensus       272 ~~l  274 (278)
                      +++
T Consensus       213 StL  215 (337)
T KOG1580|consen  213 STL  215 (337)
T ss_pred             HHH
Confidence            655

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.94  E-value=0.034  Score=49.28  Aligned_cols=157  Identities=13%  Similarity=0.069  Sum_probs=96.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhCCC----CCCCcc----hHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHH
Q 023719          119 PLFETVFMRCTVTLILSYLWLRRSGQP----IFGPMH----ARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAP  190 (278)
Q Consensus       119 ~p~~~~~~R~~~a~l~l~~~~~~~~~~----~~~~~~----~~~~~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~P  190 (278)
                      -|.-+.+.++++...+...+-+...+-    .++..+    .-+.++=..+.-..+...-.+.+++.+++-=-+-..+..
T Consensus        60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt  139 (347)
T KOG1442|consen   60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT  139 (347)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence            467788888888776665544322111    111111    011111111111222233445667777665555567788


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccccccc---cchhhHHHHHHHHHHHHHHHhhhhhcc--CCchhHH
Q 023719          191 IMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQ---GREVSLQKLFYYAKNGFHAYVNSQVFS--GETRFIC  265 (278)
Q Consensus       191 l~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~~~~~---~~~~~~g~l~al~~A~~~i~~r~~~~~--~~~~~i~  265 (278)
                      +|++++.++++|+|-+.....+..++++|-.+=+..+....   ..+..+|.++.++-|+..+++||....  +......
T Consensus       140 vFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt  219 (347)
T KOG1442|consen  140 VFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLT  219 (347)
T ss_pred             hHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhH
Confidence            99999999999999999999998888888766443332111   114556777777788999999987544  3455788


Q ss_pred             HHHHHHHHHh
Q 023719          266 AYVAIDTSKI  275 (278)
Q Consensus       266 ~y~~l~~~li  275 (278)
                      +|.++.+.++
T Consensus       220 ~ynnv~a~lL  229 (347)
T KOG1442|consen  220 AYNNVNALLL  229 (347)
T ss_pred             HHHHHHHHHH
Confidence            8888877653

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=94.64  E-value=0.31  Score=42.12  Aligned_cols=133  Identities=9%  Similarity=0.069  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC------CCcchHHHHHHHHHHH
Q 023719           91 SGLMCMALSSTIYFFMQVISDVFMV-QSIPLFETVFMRCTVTLILSYLWLRRSGQPIF------GPMHARNLLVLRALVG  163 (278)
Q Consensus        91 ~g~l~~l~aa~~~~~~~v~~k~~~~-~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~------~~~~~~~~~~l~g~~~  163 (278)
                      .|++++..-++.-+..-...|.-.. ...--++.+++-.+++.++++.+-.....+..      .+.....++++.|++.
T Consensus       155 ~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s  234 (309)
T COG5070         155 PGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS  234 (309)
T ss_pred             CceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH
Confidence            4777777777777766666666421 45566889999999999888776543322211      1233455678888888


Q ss_pred             HHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHh
Q 023719          164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI  223 (278)
Q Consensus       164 ~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li  223 (278)
                      +.-.+|--|.++.++...-+.+..++-.-.++-+.++++|+.+...+..+.++++..++-
T Consensus       235 vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iY  294 (309)
T COG5070         235 VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIY  294 (309)
T ss_pred             hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence            887888888999999988899999998889999999999999999999999888765543

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=94.20  E-value=3.1  Score=38.24  Aligned_cols=137  Identities=12%  Similarity=0.091  Sum_probs=92.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH-hCCC------CCCCcchHHHHHHHH
Q 023719           88 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRR-SGQP------IFGPMHARNLLVLRA  160 (278)
Q Consensus        88 ~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~-~~~~------~~~~~~~~~~~~l~g  160 (278)
                      +-..|+++..+++++-+...+-.|..  ++.+ +|..+.-..+-..++.|+... -.-+      ...+.+.+....+.|
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkv--k~Ws-WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G   80 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKV--KGWS-WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG   80 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhc--CCcc-HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence            34679999999999999999999985  3443 344333333333333333221 1001      112334566677888


Q ss_pred             HHHHHHHHHHHHHhhcCchHHHHHH-HhhHHHHHHHHHHHHhc-------CCCcHHHHHHHHHHHHHhHHhhccc
Q 023719          161 LVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILR-------EKLKIAEIGGLALSFFGVLFIFRRI  227 (278)
Q Consensus       161 ~~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~lla~l~l~-------Er~~~~~~~gi~l~~~Gv~li~~~~  227 (278)
                      ++-.++...|=.+++|+..+...-+ ..+.-++..++-.++.+       .+-...-++|++++++|+.++-..+
T Consensus        81 ~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG  155 (344)
T PF06379_consen   81 VLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAG  155 (344)
T ss_pred             HHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHH
Confidence            8888999999999999998886544 45777777777666543       3445578899999999999987443

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.06  E-value=0.64  Score=41.39  Aligned_cols=138  Identities=12%  Similarity=0.151  Sum_probs=96.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-------CCCcchHHHHHHHHH
Q 023719           90 YSGLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQPI-------FGPMHARNLLVLRAL  161 (278)
Q Consensus        90 ~~g~l~~l~aa~~~~~~~v~~k~~~-~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-------~~~~~~~~~~~l~g~  161 (278)
                      ..|+.+.-.+-++=+..+.+..... ...-+..++++.-..++++.++..+...+...       ..+.+.....++-.+
T Consensus       189 ~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~  268 (367)
T KOG1582|consen  189 LIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL  268 (367)
T ss_pred             eeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH
Confidence            3455555444444444444333322 13455677888877777777666554443321       123344556677777


Q ss_pred             HHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccc
Q 023719          162 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI  227 (278)
Q Consensus       162 ~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~  227 (278)
                      .+.++......-++.-.+..++.+.-.--.++.++++++|..+++-.-..+..+++.|+++=+.+.
T Consensus       269 ~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  269 AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence            777777777777788888888888888889999999999999999999999999999999977665

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=93.46  E-value=3.7  Score=36.03  Aligned_cols=125  Identities=10%  Similarity=0.131  Sum_probs=78.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHHHHh-CCC-----CCCCcchHHHHHHHHH
Q 023719           89 RYSGLMCMALSSTIYFFMQVISDVFMVQ-SIPLFETVFMRCTVTLILSYLWLRRS-GQP-----IFGPMHARNLLVLRAL  161 (278)
Q Consensus        89 ~~~g~l~~l~aa~~~~~~~v~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~-~~~-----~~~~~~~~~~~~l~g~  161 (278)
                      ...|++++++++++-|+.++.......+ +.+.+.-...-.+.+.++.+.....+ +..     .+.....  ......+
T Consensus       112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~--~~~~~i~  189 (244)
T PF04142_consen  112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSW--WVWIVIF  189 (244)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcch--HHHHHHH
Confidence            4679999999999999999999776533 33333333333444444443333222 211     1111111  1222333


Q ss_pred             HHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 023719          162 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLAL  215 (278)
Q Consensus       162 ~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l  215 (278)
                      ...++-.+.-.-++|.+.-.=..-....-+++.++++++++.+++....+|..+
T Consensus       190 ~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~  243 (244)
T PF04142_consen  190 LQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL  243 (244)
T ss_pred             HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence            444444555566788777776777778889999999999999999988887653

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK02237 hypothetical protein; Provisional

Probab=93.24  E-value=1.7  Score=33.08  Aligned_cols=37  Identities=11%  Similarity=0.031  Sum_probs=33.0

Q ss_pred             hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719          188 TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  224 (278)
Q Consensus       188 ~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~  224 (278)
                      .+-+...+..+.+-++||++.+++|..++++|+.+++
T Consensus        68 vyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~  104 (109)
T PRK02237         68 VYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIM  104 (109)
T ss_pred             HHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhe
Confidence            6666777889999999999999999999999998874

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=93.17  E-value=2.4  Score=38.46  Aligned_cols=134  Identities=17%  Similarity=0.184  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHH-HhCCCC---------CCCcchHHH
Q 023719           90 YSGLMCMALSSTIYFFMQVISDVFMVQ----SIPLFETVFMRCTVTLILSYLWLR-RSGQPI---------FGPMHARNL  155 (278)
Q Consensus        90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~----~~~p~~~~~~R~~~a~l~l~~~~~-~~~~~~---------~~~~~~~~~  155 (278)
                      ..|.++...+.++-|+-+.+.+....+    .-+|++..+--.-...+.+++..+ .++...         +.+...++.
T Consensus       163 i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv  242 (349)
T KOG1443|consen  163 IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRV  242 (349)
T ss_pred             ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence            458888888888877777777765531    124555554333333333333322 332211         111112222


Q ss_pred             ---HHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHh
Q 023719          156 ---LVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI  223 (278)
Q Consensus       156 ---~~l~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li  223 (278)
                         +.+.|...+..-.+-|.-+..++.-..++..-.-=+.+.+++..+.+++++...|.|..++..|+.+=
T Consensus       243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence               23333333333334455566666665565555666788999999999999999999999999999876

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=92.78  E-value=0.45  Score=42.06  Aligned_cols=126  Identities=12%  Similarity=0.052  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 023719           92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV  171 (278)
Q Consensus        92 g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  171 (278)
                      |+++++++++++|.+++-+|..  +..|++-.-++.+....+.-+.+...++.+     +...+.+++|.+-..+..+-.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~--~~gDg~~fQw~~~~~i~~~g~~v~~~~~~p-----~f~p~amlgG~lW~~gN~~~v   73 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKF--DTGDGFFFQWVMCSGIFLVGLVVNLILGFP-----PFYPWAMLGGALWATGNILVV   73 (254)
T ss_pred             CchhHHHHHHHhcccceeeEec--cCCCcHHHHHHHHHHHHHHHHHHHHhcCCC-----cceeHHHhhhhhhhcCceeeh
Confidence            5678999999999999999985  566776666665554444433333333332     245567889999999999999


Q ss_pred             HHhhcCchHHHHHHHhh-HHHHHHHHHHH-HhcC---CC--cHHHHHHHHHHHHHhHHhh
Q 023719          172 YSIQRLPLSQATVLSFT-APIMASIAARI-ILRE---KL--KIAEIGGLALSFFGVLFIF  224 (278)
Q Consensus       172 ~al~~~~~~~a~~l~~~-~Pl~~~lla~l-~l~E---r~--~~~~~~gi~l~~~Gv~li~  224 (278)
                      -.++.+..+.+..+-.+ +-+..=..+++ +|++   .+  .....+|++++++|..+..
T Consensus        74 pii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~  133 (254)
T PF07857_consen   74 PIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFS  133 (254)
T ss_pred             hHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHhee
Confidence            99999999999988775 44444444444 4443   22  3457888888888887654

The region concerned is approximately 280 residues long.

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=91.96  E-value=1.3  Score=33.55  Aligned_cols=111  Identities=13%  Similarity=0.075  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCC------HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHH
Q 023719           95 CMALSSTIYFFMQVISDVFMVQSIP------LFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLF  168 (278)
Q Consensus        95 ~~l~aa~~~~~~~v~~k~~~~~~~~------p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  168 (278)
                      -++..++.||..+.+.|... .+.+      .-...++|-.....+                 .|.+.+ =-+++-.+..
T Consensus         7 ~lvaVgllWG~Tnplirrgs-~g~~~v~~~~~k~~~~lqe~~tl~l-----------------~w~Y~i-PFllNqcgSa   67 (125)
T KOG4831|consen    7 KLVAVGLLWGATNPLIRRGS-LGWDKVKSSSRKIMIALQEMKTLFL-----------------NWEYLI-PFLLNQCGSA   67 (125)
T ss_pred             HHHHHHHHHccccHHHHHHH-hhHhhccCchHHHHHHHHHHHHHHH-----------------hHHHHH-HHHHHHhhHH
Confidence            46677889999999999965 2221      122222221111000                 111111 1233446677


Q ss_pred             HHHHHhhcCchHHHHHHHh-hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719          169 SFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  224 (278)
Q Consensus       169 ~~~~al~~~~~~~a~~l~~-~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~  224 (278)
                      +||.-+++.|.+.|..+.+ +.-.|+.+.+..+=.|...++.++|..++.+|+.+.+
T Consensus        68 ly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   68 LYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI  124 (125)
T ss_pred             HHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence            8999999999999987755 6778888888765456666778999999999998754

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=90.74  E-value=1.5  Score=33.33  Aligned_cols=52  Identities=12%  Similarity=0.068  Sum_probs=39.3

Q ss_pred             hhcCchHHHHHH-HhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhc
Q 023719          174 IQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR  225 (278)
Q Consensus       174 l~~~~~~~a~~l-~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~  225 (278)
                      ++-.+.+++-.- ...+-+...+..+.+-|+||++.+++|..++++|+.+++.
T Consensus        51 l~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~  103 (107)
T PF02694_consen   51 LQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF  103 (107)
T ss_pred             cCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence            333444444222 3366777888899999999999999999999999998764

; GO: 0016020 membrane

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.18  E-value=0.32  Score=43.26  Aligned_cols=134  Identities=13%  Similarity=0.104  Sum_probs=86.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHHHHhCC-------CCCCCcchHHHHHHHHH
Q 023719           90 YSGLMCMALSSTIYFFMQVISDVFMVQ-SIPLFETVFMRCTVTLILSYLWLRRSGQ-------PIFGPMHARNLLVLRAL  161 (278)
Q Consensus        90 ~~g~l~~l~aa~~~~~~~v~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~-------~~~~~~~~~~~~~l~g~  161 (278)
                      ..|+++.+.+.+.-++..+..|..... +-.-+.+.++-.+.+.++.++++...+.       +.....+.|..+.+.|+
T Consensus       184 ~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsgl  263 (347)
T KOG1442|consen  184 WIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGL  263 (347)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHH
Confidence            569999999999999999999975411 1224677788888888888887765442       12334456777778888


Q ss_pred             HHHHHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHh
Q 023719          162 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI  223 (278)
Q Consensus       162 ~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li  223 (278)
                      +++...+.-++=++.+++-.=.+-...-...-.+++..+++|..+...|-+-++++.|-.+-
T Consensus       264 fgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~Y  325 (347)
T KOG1442|consen  264 FGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAY  325 (347)
T ss_pred             HHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHH
Confidence            88754443333344443322111111122233577888999999998888877776666543

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=90.16  E-value=6.1  Score=29.98  Aligned_cols=53  Identities=21%  Similarity=0.205  Sum_probs=40.0

Q ss_pred             HHhhcCchHHHHHHHh-hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhh
Q 023719          172 YSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  224 (278)
Q Consensus       172 ~al~~~~~~~a~~l~~-~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~  224 (278)
                      .|.+..+.++-.++.- +.-..-+.++.+++||++++..+.|.++...++.++.
T Consensus        54 iG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF  107 (108)
T PF04342_consen   54 IGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFIF  107 (108)
T ss_pred             hhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence            4555567777777755 3344456788899999999999999999988887664

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=86.94  E-value=11  Score=28.45  Aligned_cols=39  Identities=13%  Similarity=-0.009  Sum_probs=32.7

Q ss_pred             hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcc
Q 023719          188 TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR  226 (278)
Q Consensus       188 ~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~  226 (278)
                      .+-+...+..++.-|.++++++|.|..++++|+.++...
T Consensus        67 vyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~  105 (109)
T COG1742          67 VYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG  105 (109)
T ss_pred             hHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence            555666777888889999999999999999999887643

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=85.85  E-value=1  Score=39.82  Aligned_cols=134  Identities=13%  Similarity=0.065  Sum_probs=86.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHH-HHH-HHHHH
Q 023719           87 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLL-VLR-ALVGF  164 (278)
Q Consensus        87 ~~~~~g~l~~l~aa~~~~~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~-~l~-g~~~~  164 (278)
                      .|..+|-+++++++-+++.+++.-.+.. ...+-.++...-.+++.++-.+-....+.....-..++... .++ .+..+
T Consensus       162 snp~~GD~lvi~GATlYaVSNv~EEflv-kn~d~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~~~i~~yl~f~L~MF  240 (336)
T KOG2766|consen  162 SNPVKGDFLVIAGATLYAVSNVSEEFLV-KNADRVELMGFLGLFGAIISAIQFIFERHHVSTLHWDSAIFLYLRFALTMF  240 (336)
T ss_pred             CCCccCcEEEEecceeeeeccccHHHHH-hcCcHHHHHHHHHHHHHHHHHHHHhhhccceeeEeehHHHHHHHHHHHHHH
Confidence            5567899999999999999999988876 88899999888888888877765444433322111112222 222 11111


Q ss_pred             HHHHHHHHHhhcCchHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHh
Q 023719          165 LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI  223 (278)
Q Consensus       165 ~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li  223 (278)
                      .-+.+.-.-++..++..-.+-.-+.-+|..++  ..|+-+.++.-.++...+..|.++-
T Consensus       241 llYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiY  297 (336)
T KOG2766|consen  241 LLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIY  297 (336)
T ss_pred             HHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEe
Confidence            22222223344444444444445666777666  5677779999999999999998665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	278
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.96
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.81

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.96  E-value=2.5e-08  Score=75.91  Aligned_cols=70  Identities=20%  Similarity=0.220  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHHH-HhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhcc
Q 023719          157 VLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR  226 (278)
Q Consensus       157 ~l~g~~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~  226 (278)
                      +...+....++.++.+++++.|.+.+..+ ..+.|+++++++++++||+++..+++|+.++++|++++...
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            45556667888999999999999999888 79999999999999999999999999999999999988654

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.81  E-value=2e-08  Score=79.32  Aligned_cols=71  Identities=20%  Similarity=0.208  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHHH-HhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhHHhhccc
Q 023719          157 VLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI  227 (278)
Q Consensus       157 ~l~g~~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~lla~l~l~Er~~~~~~~gi~l~~~Gv~li~~~~  227 (278)
                      ++..++..+++++|.+++++.|++.+..+ .++.|++++++++++++|+++..+++|++++++|++++...+
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            55666677889999999999999999988 899999999999999999999999999999999999986543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00