Citrus Sinensis ID: 023729

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYIDT
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHcccccccccccccccccccccccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEccccccccccccccccccEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEccccccEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMIsqvsflypvkilvgpkqeqelesfpsgnrsgnsaaskpvnpgsltiLGLHLtilpftkmslftdkkeVQRSATALGYIAHVVSLIASYLevplryplrlggshtyindyapsieptsdlssnialstntkpaefplflegqdATRAAYAVFLLNKDIEQLLNYIgvkslgprHVLANLKELLRTiqspeyidt
Flexible Loop (DISEMBL)
mrerlearrllmekmsmrskvekedaknqeerLSMEVRSLLVAGTALSVARKRLQEsnrllagekgyGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKellrtiqspeyidt
Low Complexity Region (SEG)
mrerlearrllmekmSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYIDT
Disordered region (IsUnstruct)
***************************************LLVAGTALSVARK******RLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVG****************************SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSI*****************PAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTI********
Disordered Region (DISOPRED)
***********************************************************************KLQKMLRMRQQFMISQVSFLYPVKI****************************NPGSLTILGLHLTILPFTKM***TDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSI**********************LFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSP*****
Disordered Region (DISEMBL)
MRERLEARRLLMEKMSM**************RLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQ********************PVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYIDT
Disordered Region (DISPRO)
*RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSI*****************PAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEY***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYIDT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	278	2.2.26 [Sep-21-2011]
Q9P2Y5	699	UV radiation resistance-a	yes	no	0.525	0.208	0.298	1e-13
O60149	474	Autophagy-related protein	no	no	0.471	0.276	0.272	2e-06

>sp|Q9P2Y5|UVRAG_HUMAN UV radiation resistance-associated gene protein OS=Homo sapiens GN=UVRAG PE=1 SV=1

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 89/194 (45%), Gaps = 48/194 (24%)

Query: 74  QKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILG 133
           Q  +R RQ  ++S++S++YP+ +       +  + F  G +  NS   +  + GS+    
Sbjct: 313 QLTIRCRQ--LLSELSYIYPIDL------NEHKDYFVCGVKLPNSEDFQAKDDGSI---- 360

Query: 134 LHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYIND 193
                                  A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D
Sbjct: 361 -----------------------AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKD 397

Query: 194 YAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKS 253
                        NI      K  EFPL+ +G +  +  Y V+LLNK+I QL    G+ +
Sbjct: 398 -------------NINDKLTEKEREFPLYPKGGEKLQFDYGVYLLNKNIAQLRYQHGLGT 444

Query: 254 LGPRHVLANLKELL 267
              R  L NLK  +
Sbjct: 445 PDLRQTLPNLKNFM 458

Homo sapiens (taxid: 9606)

>sp|O60149|ATG14_SCHPO Autophagy-related protein 14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atg14 PE=3 SV=2

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 23/154 (14%)

Query: 123 PVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPL 182
           P N    TI  L L+  P        DK      A ++G++AH++  ++ YLE  L YP+
Sbjct: 334 PGNHDEFTIRNLRLSFEP--------DKINNVEMAASIGFLAHLLQTLSKYLEKELAYPI 385

Query: 183 RLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDI 242
               S + I D       T D+ + I          FPL+   +      +A++LLN+D+
Sbjct: 386 LCASSRSSILDTL-----TPDIPTRI----------FPLYPATRPIELFEHAIYLLNQDV 430

Query: 243 EQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYI 276
              L   G+       +L N K+LL+ I S +++
Sbjct: 431 NDFLETFGLPIDQSMDILRNFKKLLQFILSGQHL 464

Required for cytoplasm to vacuole transport (Cvt) and autophagy as a part of the autophagy-specific vps34 PI3-kinase complex I. This complex is essential to recruit the ATG8-phosphatidylinositol conjugate and the atg12-atg5 conjugate to the pre-autophagosomal structure.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
255554070	356	conserved hypothetical protein [Ricinus	1.0	0.780	0.741	1e-118
449442479	359	PREDICTED: UV radiation resistance-assoc	0.996	0.771	0.744	1e-117
449505315	359	PREDICTED: LOW QUALITY PROTEIN: UV radia	0.996	0.771	0.737	1e-116
225433608	345	PREDICTED: UV radiation resistance-assoc	0.996	0.802	0.741	1e-113
224141253	333	predicted protein [Populus trichocarpa]	0.978	0.816	0.732	1e-108
356525229	354	PREDICTED: uncharacterized protein LOC10	0.996	0.782	0.683	1e-104
357518775	355	UV radiation resistance-associated gene	1.0	0.783	0.663	1e-101
30685426	352	uncharacterized protein [Arabidopsis tha	0.982	0.775	0.665	1e-101
79324025	276	uncharacterized protein [Arabidopsis tha	0.982	0.989	0.665	1e-101
297823059	353	hypothetical protein ARALYDRAFT_482212 [	0.985	0.776	0.658	1e-100

>gi|255554070|ref|XP_002518075.1| conserved hypothetical protein [Ricinus communis] gi|223542671|gb|EEF44208.1| conserved hypothetical protein [Ricinus communis]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/279 (74%), Positives = 243/279 (87%), Gaps = 1/279 (0%)

Query: 1   MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 60
           MR++LEA+ L +E +S R+KV  E+AK +E RLSMEVRSLLVAGTALSV+ K+LQES R 
Sbjct: 78  MRQKLEAKELAIESISARTKVAAENAKKEENRLSMEVRSLLVAGTALSVSSKQLQESKRS 137

Query: 61  LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 120
           ++GE+GYG L+ LQKMLR+RQQ+ ISQVS L+PVKI  GP +EQELESFP+ ++SGN   
Sbjct: 138 VSGERGYGRLRNLQKMLRIRQQYTISQVSLLFPVKISAGPSEEQELESFPNTSKSGNYTG 197

Query: 121 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 180
           SKPVN GSLTILGLHLT+LPFTK+S FTDKKE+Q+SATALGY+AH VSLIASYLEVPLRY
Sbjct: 198 SKPVNQGSLTILGLHLTMLPFTKISFFTDKKEIQKSATALGYVAHAVSLIASYLEVPLRY 257

Query: 181 PLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 239
           P+RLGGS +YINDYAPS EPT  +LS + + STN KP EFPLFLEGQD TRAAYAVFLLN
Sbjct: 258 PVRLGGSRSYINDYAPSAEPTLPELSLSASSSTNVKPVEFPLFLEGQDTTRAAYAVFLLN 317

Query: 240 KDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYIDT 278
           KD+EQLLNYIG+KSLGPRHVLANLKEL+RTIQS E++DT
Sbjct: 318 KDLEQLLNYIGIKSLGPRHVLANLKELIRTIQSAEFLDT 356

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442479|ref|XP_004139009.1| PREDICTED: UV radiation resistance-associated gene protein-like [Cucumis sativus]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/278 (74%), Positives = 237/278 (85%), Gaps = 1/278 (0%)

Query: 1   MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 60
           MRE+LEAR+ ++E M MRSK+  ED K QEE LS+EVRSLLVAGTALS ARKRLQESNRL
Sbjct: 81  MREKLEARKCIVENMGMRSKLVSEDVKKQEESLSIEVRSLLVAGTALSKARKRLQESNRL 140

Query: 61  LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 120
           L+GE+GY  L+ LQKMLR RQQFM+SQV+FLYPVKIL GP  +QELESFPS +R GNS+ 
Sbjct: 141 LSGEEGYDRLKSLQKMLRRRQQFMVSQVAFLYPVKILTGPANDQELESFPSTSRLGNSSG 200

Query: 121 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 180
           SKPVN GSLTILGL L +LPF KMS F+DKKE QRSA+ALGY+AH VSLI+SYL+VPLRY
Sbjct: 201 SKPVNHGSLTILGLSLNVLPFKKMSFFSDKKETQRSASALGYVAHAVSLISSYLKVPLRY 260

Query: 181 PLRLGGSHTYINDYAPSIEPTSDLS-SNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 239
           PLRLGGS +Y+ DYAPSIEPTS ++ S    STN K  EFPLFL+GQD TRAAYAVFLLN
Sbjct: 261 PLRLGGSRSYLCDYAPSIEPTSSVTLSTTQPSTNMKHVEFPLFLDGQDTTRAAYAVFLLN 320

Query: 240 KDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYID 277
           KD+EQLLN+IGVKSLGPRH+LANLKE+ R IQS +YID
Sbjct: 321 KDLEQLLNFIGVKSLGPRHILANLKEIFRVIQSADYID 358

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505315|ref|XP_004162433.1| PREDICTED: LOW QUALITY PROTEIN: UV radiation resistance-associated gene protein-like [Cucumis sativus]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/278 (73%), Positives = 237/278 (85%), Gaps = 1/278 (0%)

Query: 1   MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 60
           MRE+LEAR+ ++E M MRSK+  ED K QEE LS+EVRSLLVAGTALS ARKRLQESNRL
Sbjct: 81  MREKLEARKCIVENMGMRSKLVSEDVKKQEESLSIEVRSLLVAGTALSKARKRLQESNRL 140

Query: 61  LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 120
           L+GE+GY  L+ LQKMLR RQQFM+SQV+FLYPVKIL GP  +QELESFPS +R GNS+ 
Sbjct: 141 LSGEEGYDRLKSLQKMLRRRQQFMVSQVAFLYPVKILTGPANDQELESFPSTSRLGNSSG 200

Query: 121 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 180
           SKPVN GSLTILGL+L +LPF KMS F+DKKE QRSA+ALGY+AH VSLI+SYL+VPLRY
Sbjct: 201 SKPVNHGSLTILGLNLNVLPFXKMSFFSDKKETQRSASALGYVAHAVSLISSYLKVPLRY 260

Query: 181 PLRLGGSHTYINDYAPSIEPTSDLS-SNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 239
           PLRLGGS +Y+ DYAPSIEPTS ++ S    STN K  E PLFL+GQD TRAAYAVFLLN
Sbjct: 261 PLRLGGSRSYLCDYAPSIEPTSSVTLSTTQPSTNMKHVEXPLFLDGQDTTRAAYAVFLLN 320

Query: 240 KDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYID 277
           +D+EQLLN+IGVKSLGPRH+LANLKE+ R IQS +YID
Sbjct: 321 RDLEQLLNFIGVKSLGPRHILANLKEIFRVIQSADYID 358

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433608|ref|XP_002273954.1| PREDICTED: UV radiation resistance-associated gene protein [Vitis vinifera] gi|298205154|emb|CBI17213.3| unnamed protein product [Vitis vinifera]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/279 (74%), Positives = 237/279 (84%), Gaps = 2/279 (0%)

Query: 1   MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 60
           M++RL+ R+ +   MSM+SK+ +ED K +EERL +EVRSLLVAGTALSV+R RLQ++NRL
Sbjct: 68  MQQRLDDRKFVTGDMSMQSKIVEEDIKKKEERLGLEVRSLLVAGTALSVSRNRLQDANRL 127

Query: 61  LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 120
           L+GE+GY HL+ L+KMLR+RQQ MISQVSFLYPVK  +G   EQELESFPS +R+GN+  
Sbjct: 128 LSGERGYVHLKNLEKMLRVRQQHMISQVSFLYPVKPSIG-SLEQELESFPSSSRAGNAVG 186

Query: 121 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 180
           SKP+N GSLTI GL L +L   KMS FTDKKEVQRSATALGY+AH VSLIASYLEVPLRY
Sbjct: 187 SKPLNEGSLTISGLQLNMLAIKKMSFFTDKKEVQRSATALGYVAHAVSLIASYLEVPLRY 246

Query: 181 PLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 239
           PLRLGGS +YINDYAPSIEPT +D  SN  L TN K  EFPLFLEGQD TRAAYAVFLLN
Sbjct: 247 PLRLGGSRSYINDYAPSIEPTPTDSVSNSLLLTNLKHIEFPLFLEGQDTTRAAYAVFLLN 306

Query: 240 KDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYIDT 278
           KD+EQLLN+IGVKSLGPRHVLANLKELLRTI SPE+IDT
Sbjct: 307 KDLEQLLNFIGVKSLGPRHVLANLKELLRTILSPEFIDT 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141253|ref|XP_002323989.1| predicted protein [Populus trichocarpa] gi|222866991|gb|EEF04122.1| predicted protein [Populus trichocarpa]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/277 (73%), Positives = 234/277 (84%), Gaps = 5/277 (1%)

Query: 1   MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 60
           M+ER+EAR+L++E++  +SKV  E++  +EERLS EVRSLLVAGTALSVA K+LQ+S R 
Sbjct: 62  MKERVEARKLVIERIKGQSKVAAENSTKEEERLSSEVRSLLVAGTALSVASKQLQDSRRS 121

Query: 61  LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 120
           LAGE+GY  L KLQK LR+RQQFMISQVS LYP+KI  GP +EQELESFPS N  G    
Sbjct: 122 LAGERGYVRLTKLQKKLRLRQQFMISQVSLLYPIKISAGPSEEQELESFPSRNYVG---- 177

Query: 121 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 180
           SKPVN GSLTILGLHLT+ PFTKMS FTDKKEVQRSA+ALG++AH VSLIASYLEVPLRY
Sbjct: 178 SKPVNQGSLTILGLHLTMAPFTKMSFFTDKKEVQRSASALGHVAHAVSLIASYLEVPLRY 237

Query: 181 PLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNK 240
            LRLGGS++YI D APS+E +  LSS +  + NTKP EFPLFLEGQD TRAAYAVFLLNK
Sbjct: 238 SLRLGGSNSYIIDCAPSVESSDLLSSTLLTA-NTKPVEFPLFLEGQDTTRAAYAVFLLNK 296

Query: 241 DIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYID 277
           D+EQLLNYIGV+SLGPRHVLANLKEL RTIQS E++D
Sbjct: 297 DLEQLLNYIGVRSLGPRHVLANLKELTRTIQSAEFLD 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525229|ref|XP_003531229.1| PREDICTED: uncharacterized protein LOC100794161 [Glycine max]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/278 (68%), Positives = 228/278 (82%), Gaps = 1/278 (0%)

Query: 1   MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 60
           MR++LE++++LME MS+ S++ KE+A  QEE+LS  V+SLLV+G ALSV  + LQES+RL
Sbjct: 76  MRQKLESKKMLMENMSICSRLAKEEASKQEEQLSGAVQSLLVSGGALSVTSRNLQESSRL 135

Query: 61  LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 120
           L+ E GY HL+KLQKMLR RQQ+M SQ+S LYPVKILVGP QEQELE++P G+ +G SA 
Sbjct: 136 LSEENGYVHLRKLQKMLRKRQQYMTSQISMLYPVKILVGPAQEQELEAYPLGSLAGTSAG 195

Query: 121 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 180
            KP+N GSLTI GLHL +L F KMS FTDKKE+Q SATALGY+AH VSLIASYL+VPLRY
Sbjct: 196 LKPINQGSLTIHGLHLNVLSFRKMSFFTDKKEIQNSATALGYVAHAVSLIASYLQVPLRY 255

Query: 181 PLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNK 240
           PLRLG SH+YI D APS E TS  +S+ A + N K  +FPLFLEGQD TRAAYAVFLLNK
Sbjct: 256 PLRLGASHSYIIDNAPSTELTSSEASSNA-NINAKHVKFPLFLEGQDTTRAAYAVFLLNK 314

Query: 241 DIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYIDT 278
           D+EQLLN+I  K+LGPRHVLANL+ELLRTIQS  +ID 
Sbjct: 315 DLEQLLNFIDAKTLGPRHVLANLRELLRTIQSSAFIDN 352

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518775|ref|XP_003629676.1| UV radiation resistance-associated gene protein [Medicago truncatula] gi|355523698|gb|AET04152.1| UV radiation resistance-associated gene protein [Medicago truncatula]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/279 (66%), Positives = 227/279 (81%), Gaps = 1/279 (0%)

Query: 1   MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 60
           MR++LE+++L+ME MS+RS++ KE A  QEE+LS  ++SLLVAG  LSV  + LQES+RL
Sbjct: 75  MRQKLESKKLMMENMSIRSRLAKEAAGKQEEQLSGALQSLLVAGGTLSVTSRNLQESSRL 134

Query: 61  LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 120
           ++ E GY  L+ LQKMLRMRQQ+M SQ+S LYPVK+LV P QEQELE++P G+ +G    
Sbjct: 135 MSEENGYVRLRNLQKMLRMRQQYMASQISMLYPVKLLVEPAQEQELEAYPLGSPAGTPPE 194

Query: 121 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 180
            KPVN GSLTI GLHL++L F KMS FTDKKE+Q+SATALGY+AH VSL+ASYL+VPLRY
Sbjct: 195 LKPVNQGSLTIQGLHLSMLSFRKMSFFTDKKEIQKSATALGYVAHAVSLVASYLQVPLRY 254

Query: 181 PLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 239
           P+RLG SH+YI D APSIE T S+ S++  + TN K  EFPLFLEGQD TRAAYAVFLL+
Sbjct: 255 PVRLGASHSYIIDNAPSIELTSSEASTSTKVFTNAKHVEFPLFLEGQDTTRAAYAVFLLS 314

Query: 240 KDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYIDT 278
           KD+EQLLN+IG KSLGPRHVLANL+EL RTIQS  +ID 
Sbjct: 315 KDLEQLLNFIGAKSLGPRHVLANLRELFRTIQSTAFIDN 353

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685426|ref|NP_850197.1| uncharacterized protein [Arabidopsis thaliana] gi|18700113|gb|AAL77668.1| At2g32760/F24L7.10 [Arabidopsis thaliana] gi|62320642|dbj|BAD95308.1| hypothetical protein [Arabidopsis thaliana] gi|94442409|gb|ABF18992.1| At2g32760 [Arabidopsis thaliana] gi|330253639|gb|AEC08733.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/278 (66%), Positives = 220/278 (79%), Gaps = 5/278 (1%)

Query: 1   MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 60
           MR+RLEAR+LL++K S+  KV ++D K +EE LS EVRSLLV GT LS+A+ +LQESN  
Sbjct: 77  MRQRLEARKLLVDKTSVACKVTEQDVKKKEENLSTEVRSLLVGGTTLSIAKSKLQESNCQ 136

Query: 61  LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 120
           L GE GY HL+ +   LR RQQFM+SQVSF+YP+KI  GP Q+QELESFP G+R G    
Sbjct: 137 LEGESGYAHLKIVTNKLRKRQQFMVSQVSFIYPLKIEAGPSQDQELESFPGGSRLG---- 192

Query: 121 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 180
           +KP++ GS+ ILGL  ++ PFTKMS FTDKKEVQ+SATALGY+AH VSLIA YL VP+RY
Sbjct: 193 TKPLSQGSVRILGLPFSMAPFTKMSFFTDKKEVQKSATALGYVAHAVSLIAPYLRVPIRY 252

Query: 181 PLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 239
           PL LGGS TYI DYAP IEP+ SD+S    LS N    EFPLFL+GQD TRAAYAVFLLN
Sbjct: 253 PLCLGGSKTYIRDYAPYIEPSPSDMSPITTLSQNINFVEFPLFLDGQDTTRAAYAVFLLN 312

Query: 240 KDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYID 277
           K+IEQLLN++G  SLGPR VLANLKEL+R IQSP+YID
Sbjct: 313 KNIEQLLNFVGENSLGPRQVLANLKELIRIIQSPDYID 350

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79324025|ref|NP_001031467.1| uncharacterized protein [Arabidopsis thaliana] gi|330253640|gb|AEC08734.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/278 (66%), Positives = 220/278 (79%), Gaps = 5/278 (1%)

Query: 1   MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 60
           MR+RLEAR+LL++K S+  KV ++D K +EE LS EVRSLLV GT LS+A+ +LQESN  
Sbjct: 1   MRQRLEARKLLVDKTSVACKVTEQDVKKKEENLSTEVRSLLVGGTTLSIAKSKLQESNCQ 60

Query: 61  LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 120
           L GE GY HL+ +   LR RQQFM+SQVSF+YP+KI  GP Q+QELESFP G+R G    
Sbjct: 61  LEGESGYAHLKIVTNKLRKRQQFMVSQVSFIYPLKIEAGPSQDQELESFPGGSRLG---- 116

Query: 121 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 180
           +KP++ GS+ ILGL  ++ PFTKMS FTDKKEVQ+SATALGY+AH VSLIA YL VP+RY
Sbjct: 117 TKPLSQGSVRILGLPFSMAPFTKMSFFTDKKEVQKSATALGYVAHAVSLIAPYLRVPIRY 176

Query: 181 PLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 239
           PL LGGS TYI DYAP IEP+ SD+S    LS N    EFPLFL+GQD TRAAYAVFLLN
Sbjct: 177 PLCLGGSKTYIRDYAPYIEPSPSDMSPITTLSQNINFVEFPLFLDGQDTTRAAYAVFLLN 236

Query: 240 KDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYID 277
           K+IEQLLN++G  SLGPR VLANLKEL+R IQSP+YID
Sbjct: 237 KNIEQLLNFVGENSLGPRQVLANLKELIRIIQSPDYID 274

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823059|ref|XP_002879412.1| hypothetical protein ARALYDRAFT_482212 [Arabidopsis lyrata subsp. lyrata] gi|297325251|gb|EFH55671.1| hypothetical protein ARALYDRAFT_482212 [Arabidopsis lyrata subsp. lyrata]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/278 (65%), Positives = 221/278 (79%), Gaps = 4/278 (1%)

Query: 1   MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 60
           MR+RLEAR+LL++K S+  KV ++D K +E+ LS EVRSLLV GT LS+A+ +LQESN  
Sbjct: 77  MRQRLEARKLLVDKTSIACKVIEQDVKKKEDNLSTEVRSLLVGGTTLSIAKSKLQESNCQ 136

Query: 61  LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 120
           L GE GY HL+ +   LR RQQFMISQVSF+YP+KI  GP Q+QELESFP G+R      
Sbjct: 137 LEGESGYAHLKIVTNKLRKRQQFMISQVSFIYPLKIEAGPSQDQELESFPGGSR---LVG 193

Query: 121 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 180
           +KP++ GS+ ILGL  ++ PFT+MS FTDKKEVQ+SATALGY+AH VSLIA YL +P+RY
Sbjct: 194 TKPLSQGSVRILGLPFSMAPFTRMSFFTDKKEVQKSATALGYVAHAVSLIAPYLRMPIRY 253

Query: 181 PLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 239
           PLRLGGS TYI DYAP IEP+ SD+S    LS N+   EFPLFL+GQD TRAAYAVFLLN
Sbjct: 254 PLRLGGSKTYIRDYAPYIEPSQSDMSPITTLSQNSNFVEFPLFLDGQDTTRAAYAVFLLN 313

Query: 240 KDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYID 277
           K+IEQLLN++G  SLGPR VLANLKEL+R IQSP+YID
Sbjct: 314 KNIEQLLNFVGENSLGPRQVLANLKELIRIIQSPDYID 351

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
TAIR|locus:2046362	352	AT2G32760 "AT2G32760" [Arabido	0.928	0.732	0.665	1.6e-86
UNIPROTKB|F1NDB2	659	UVRAG "Uncharacterized protein	0.352	0.148	0.396	1e-11
UNIPROTKB|F1NAL8	679	UVRAG "Uncharacterized protein	0.352	0.144	0.396	1.1e-11
RGD|1589754	698	Uvrag "UV radiation resistance	0.352	0.140	0.396	5e-11
UNIPROTKB|F1PYG4	699	UVRAG "Uncharacterized protein	0.352	0.140	0.396	6.3e-11
UNIPROTKB|E9PR71	598	UVRAG "UV radiation resistance	0.352	0.163	0.396	6.4e-11
UNIPROTKB|Q9P2Y5	699	UVRAG "UV radiation resistance	0.352	0.140	0.396	1e-10
UNIPROTKB|F1N3U6	699	UVRAG "Uncharacterized protein	0.352	0.140	0.396	1.4e-10
UNIPROTKB|I3L6L5	537	UVRAG "Uncharacterized protein	0.352	0.182	0.351	5.4e-10
ZFIN|ZDB-GENE-040426-924	693	uvrag "UV radiation resistance	0.348	0.139	0.396	3e-09

TAIR|locus:2046362 AT2G32760 "AT2G32760" [Arabidopsis thaliana (taxid:3702)]

 Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
 Identities = 175/263 (66%), Positives = 206/263 (78%)

Query:    16 SMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQK 75
             S+  KV ++D K +EE LS EVRSLLV GT LS+A+ +LQESN  L GE GY HL+ +  
Sbjct:    92 SVACKVTEQDVKKKEENLSTEVRSLLVGGTTLSIAKSKLQESNCQLEGESGYAHLKIVTN 151

Query:    76 MLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLH 135
              LR RQQFM+SQVSF+YP+KI  GP Q+QELESFP G+R G    +KP++ GS+ ILGL 
Sbjct:   152 KLRKRQQFMVSQVSFIYPLKIEAGPSQDQELESFPGGSRLG----TKPLSQGSVRILGLP 207

Query:   136 LTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYA 195
              ++ PFTKMS FTDKKEVQ+SATALGY+AH VSLIA YL VP+RYPL LGGS TYI DYA
Sbjct:   208 FSMAPFTKMSFFTDKKEVQKSATALGYVAHAVSLIAPYLRVPIRYPLCLGGSKTYIRDYA 267

Query:   196 PSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSL 254
             P IEP+ SD+S    LS N    EFPLFL+GQD TRAAYAVFLLNK+IEQLLN++G  SL
Sbjct:   268 PYIEPSPSDMSPITTLSQNINFVEFPLFLDGQDTTRAAYAVFLLNKNIEQLLNFVGENSL 327

Query:   255 GPRHVLANLKELLRTIQSPEYID 277
             GPR VLANLKEL+R IQSP+YID
Sbjct:   328 GPRQVLANLKELIRIIQSPDYID 350

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NDB2 UVRAG "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 167 (63.8 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
 Identities = 44/111 (39%), Positives = 60/111 (54%)

Query:   157 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 216
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   322 AVALGYTAHLVSMISYFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 368

Query:   217 AEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELL 267
              EFPL+ +G +  +  Y V+LLNK+I QL    G+ +   R  L NLK  +
Sbjct:   369 REFPLYPKGGEKLQFEYGVYLLNKNIAQLRYQHGLSTPDLRQTLPNLKNFM 419

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

UNIPROTKB|F1NAL8 UVRAG "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 167 (63.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
 Identities = 44/111 (39%), Positives = 60/111 (54%)

Query:   157 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 216
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   342 AVALGYTAHLVSMISYFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 388

Query:   217 AEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELL 267
              EFPL+ +G +  +  Y V+LLNK+I QL    G+ +   R  L NLK  +
Sbjct:   389 REFPLYPKGGEKLQFEYGVYLLNKNIAQLRYQHGLSTPDLRQTLPNLKNFM 439

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

RGD|1589754 Uvrag "UV radiation resistance associated gene" [Rattus norvegicus (taxid:10116)]

 Score = 164 (62.8 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
 Identities = 44/111 (39%), Positives = 60/111 (54%)

Query:   157 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 216
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   360 AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 406

Query:   217 AEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELL 267
              EFPL+ +G +  +  Y V+LLNK+I QL    G+ +   R  L NLK  +
Sbjct:   407 REFPLYPKGGEKLQFDYGVYLLNKNIAQLRYQHGLGTPDLRQTLPNLKNFM 457

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

UNIPROTKB|F1PYG4 UVRAG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 164 (62.8 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
 Identities = 44/111 (39%), Positives = 60/111 (54%)

Query:   157 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 216
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   361 AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 407

Query:   217 AEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELL 267
              EFPL+ +G +  +  Y V+LLNK+I QL    G+ +   R  L NLK  +
Sbjct:   408 REFPLYPKGGEKLQFDYGVYLLNKNIAQLRYQHGLGTPDLRQTLPNLKNFM 458

GO:0043234 "protein complex" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0010508 "positive regulation of autophagy" evidence=IEA

UNIPROTKB|E9PR71 UVRAG "UV radiation resistance-associated gene protein" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
 Identities = 44/111 (39%), Positives = 60/111 (54%)

Query:   157 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 216
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   260 AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 306

Query:   217 AEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELL 267
              EFPL+ +G +  +  Y V+LLNK+I QL    G+ +   R  L NLK  +
Sbjct:   307 REFPLYPKGGEKLQFDYGVYLLNKNIAQLRYQHGLGTPDLRQTLPNLKNFM 357

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

UNIPROTKB|Q9P2Y5 UVRAG "UV radiation resistance-associated gene protein" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
 Identities = 44/111 (39%), Positives = 60/111 (54%)

Query:   157 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 216
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   361 AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 407

Query:   217 AEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELL 267
              EFPL+ +G +  +  Y V+LLNK+I QL    G+ +   R  L NLK  +
Sbjct:   408 REFPLYPKGGEKLQFDYGVYLLNKNIAQLRYQHGLGTPDLRQTLPNLKNFM 458

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005770 "late endosome" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0005764 "lysosome" evidence=IDA

GO:0006281 "DNA repair" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

UNIPROTKB|F1N3U6 UVRAG "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 163 (62.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
 Identities = 44/111 (39%), Positives = 60/111 (54%)

Query:   157 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 216
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   361 AVALGYTAHLVSMISFFLQVPLRYPVIHKGSRSTIKD-------------NINDKLTEKE 407

Query:   217 AEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELL 267
              EFPL+ +G +  +  Y V+LLNK+I QL    G+ +   R  L NLK  +
Sbjct:   408 REFPLYPKGGEKLQFDYGVYLLNKNIAQLRYQHGLGTPDLRQTLPNLKNFM 458

GO:0043234 "protein complex" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0010508 "positive regulation of autophagy" evidence=IEA

UNIPROTKB|I3L6L5 UVRAG "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 155 (59.6 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
 Identities = 39/111 (35%), Positives = 60/111 (54%)

Query:   157 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 216
             A ALGY AH+VS+++ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   199 AVALGYTAHLVSMVSFFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 245

Query:   217 AEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELL 267
              EFPL+ +G +  +  Y V+LLNK+I Q+    G++    +++  N K  +
Sbjct:   246 REFPLYPKGGEKLQFDYGVYLLNKNIAQIKWETGLQKSNAKNIFPNEKSFV 296

GO:0010508 "positive regulation of autophagy" evidence=IEA

ZFIN|ZDB-GENE-040426-924 uvrag "UV radiation resistance associated gene" [Danio rerio (taxid:7955)]

 Score = 151 (58.2 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
 Identities = 44/111 (39%), Positives = 61/111 (54%)

Query:   157 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 216
             A ALGY AH+V +I+ +L++PLRYP+   GS + I D   +I  T  L+         K 
Sbjct:   358 AVALGYTAHLVLMISCFLQIPLRYPVIHKGSRSTIKD---TI--TDKLTE--------KE 404

Query:   217 AEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELL 267
              EFPL+  G+   +  Y V+LLNK+I QL    G+ +   R  L NLK  L
Sbjct:   405 REFPLYPRGE-RFQFEYGVYLLNKNIAQLRYQHGLSTPDLRQTLPNLKNFL 454

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00038844001 SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (345 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	278
pfam10186	307	pfam10186, Atg14, UV radiation resistance protein	5e-04

>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and autophagy-related subunit 14

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 61/312 (19%), Positives = 111/312 (35%), Gaps = 93/312 (29%)

Query: 4   RLEARRLLMEKMSMRSKVEK-------EDAKNQEERLSMEV-------------RSLLVA 43
           RL+  RLL+E   ++ KVE+       ED K   + L +EV              S L  
Sbjct: 26  RLDLARLLLENEELKQKVEEALEGATNEDGKLAADLLKLEVARKKERLNQIRARISQLKE 85

Query: 44  GTALSVARKRLQESNRLLAGEKG------YGHLQKLQKMLRMRQQ--------------- 82
              +   R+R++E  R LA  +       Y   ++    L   Q                
Sbjct: 86  --EIEQKRERIEELKRALAQRRSDLSSASYQLEKRRASQLEKLQDEIKRTRSKLNALHSL 143

Query: 83  ------FMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLH- 135
                 F+  +++ L+P++ ++  ++                ++S+P   G + ++ L  
Sbjct: 144 LAEKRSFLCRELAKLFPLRRVIRGRK--------------GDSSSEPYTIGGVPLVDLRD 189

Query: 136 LTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYA 195
           L  LP           EV   + +LGY+A +++L++ YL + L   + L  S    +   
Sbjct: 190 LNSLP----------PEVI--SASLGYMAQLLNLVSHYLSIRLPAEITLPCS----DYPQ 233

Query: 196 PSIEP-TSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVK-- 252
           P+I      +   +   +   P  +  F EG         V LL  ++  L    G+   
Sbjct: 234 PTIYSPPLFIDRPLPKLSKEDPETYSDFQEG---------VSLLAYNVLWLCRTQGLDVP 284

Query: 253 -SLGPRHVLANL 263
             L        L
Sbjct: 285 SLLDQYEDDCLL 296

The Atg14 or Apg14 proteins are hydrophilic proteins with a predicted molecular mass of 40.5 kDa, and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole. Subcellular fractionation indicate that Apg14p and Apg6p are peripherally associated with a membrane structure(s). Apg14p was co-immunoprecipitated with Apg6p, suggesting that they form a stable protein complex. These results imply that Apg6/Vps30p has two distinct functions: in the autophagic process and in the vacuolar protein sorting pathway. Apg14p may be a component specifically required for the function of Apg6/Vps30p through the autophagic pathway. There are 17 auto-phagosomal component proteins which are categorized into six functional units, one of which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The AS-PI3K complex and the Atg2-Atg18 complex are essential for nucleation, and the specific function of the AS-PI3K apparently is to produce phosphatidylinositol 3-phosphate (PtdIns(3)P) at the pre-autophagosomal structure (PAS). The localisation of this complex at the PAS is controlled by Atg14. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. This effect seems to be mediated through direct interaction of the human Atg14 with Beclin 1 in the human phosphatidylinositol 3-kinase class III complex. Length = 307

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	278
PF10186	302	Atg14: UV radiation resistance protein and autopha	100.0
KOG2896	377	consensus UV radiation resistance associated prote	100.0
KOG4398	359	consensus Predicted coiled-coil protein [General f	99.39
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	99.04
KOG2751	447	consensus Beclin-like protein [Signal transduction	98.14
COG4942	420	Membrane-bound metallopeptidase [Cell division and	92.33
PF10186	302	Atg14: UV radiation resistance protein and autopha	91.82
PRK11637	428	AmiB activator; Provisional	91.74
PRK10884	206	SH3 domain-containing protein; Provisional	87.42
PRK11637	428	AmiB activator; Provisional	82.22
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	82.18
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	81.5

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=100.00  E-value=1.4e-39  Score=298.51  Aligned_cols=233  Identities=30%  Similarity=0.455  Sum_probs=178.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhh-----hchHHHHHHHH
Q 023729            2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEK-----GYGHLQKLQKM   76 (278)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~-----~~~rL~~l~~~   76 (278)
                      +.++++.+.|+..++..++.++++|++.|+++...+..+..+++++.+.....++....+....     ...++..++.+
T Consensus        62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  141 (302)
T PF10186_consen   62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQ  141 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888889999999999999999999999999999999999888833322222222222111     14456689999


Q ss_pred             HHHHHHHHHHHHHhhccccccCCCCcccccccCCCCCCCCCCCCCCCCCCcceEEeceecCCCcccccCCCCChhhHHHH
Q 023729           77 LRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRS  156 (278)
Q Consensus        77 l~~rr~~lv~el~~IypI~~~~~p~~~~~~~~~p~~~~~g~~~~~~~~~~~~~tI~Gl~Lp~~~~~~~~~f~~~~~~~~i  156 (278)
                      +..+|..++.+|..||||+++..++            ..+      +.....|+|+|++||+.     ..|...++ +.|
T Consensus       142 l~~~r~~l~~~l~~ifpI~~~~~~~------------~~~------~~~~~~~~I~~~~lp~~-----~~~~~~~~-~~i  197 (302)
T PF10186_consen  142 LARRRRQLIQELSEIFPIEQVSSPR------------RPS------DSSSSEYTICGLPLPNS-----RDFNSLPD-EEI  197 (302)
T ss_pred             HHHHHHHHHHHHHHHhCceeecccc------------cCC------CCCCCCeeecCcccCCC-----cccccCCH-HHH
Confidence            9999999999999999998762100            000      00145899999999995     23454544 689


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCcccccCCcceeecCCCCCCCCCCccccccccCCCCCcccCcccCCCChhhHHHHHH
Q 023729          157 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVF  236 (278)
Q Consensus       157 saaLgyvahlv~lls~yL~v~LpYpi~~~gSrSyI~d~~~~~~~~~~~~~~~~~~~~~~~~~fPLf~~~~d~~~F~yav~  236 (278)
                      +||||||||+|.++|+||+|||||||.+.||+|+|.| .+.              ....+..++.+.++.++++|+|||+
T Consensus       198 saALgyvahlv~lls~yL~v~Lpy~i~~~gs~s~i~d-~~~--------------~~~~~~~~~~~~~~~~~~~f~~~v~  262 (302)
T PF10186_consen  198 SAALGYVAHLVSLLSRYLGVPLPYPITPSGSRSTIID-FSP--------------SIDRPLPSLSYESGVDRQRFEYAVF  262 (302)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCcccCccccchhh-ccc--------------ccCCcchhhhccccccHHHHHHHHH
Confidence            9999999999999999999999999999999999999 311              0123334444555778999999999


Q ss_pred             HHHHHHHHHHHhcCCCCC--CccchHHHHHHHHHHccCC
Q 023729          237 LLNKDIEQLLNYIGVKSL--GPRHVLANLKELLRTIQSP  273 (278)
Q Consensus       237 LLnknI~qL~~~~Gl~~~--~~~~tL~NL~~Ll~~~~s~  273 (278)
                      |||+||+|||++||+++.  |+.++++||..++......
T Consensus       263 lLn~nI~~L~~~q~~~~~~l~~~~~l~nl~~~l~~l~~~  301 (302)
T PF10186_consen  263 LLNKNIAQLCFSQGIDVPLLDPRDTLGNLLNLLWSLLQA  301 (302)
T ss_pred             HHHHHHHHHHHHcCCCCCcCCchhhHHHHHHHHhhhccC
Confidence            999999999999999988  7889999999888876544

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]

Probab=100.00  E-value=4.5e-35  Score=273.75  Aligned_cols=209  Identities=29%  Similarity=0.516  Sum_probs=162.8

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhhh-----chH-HHHHHHHHHHHHHHHHHHHHhhccccccCCCCccc
Q 023729           31 ERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKG-----YGH-LQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQ  104 (278)
Q Consensus        31 e~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~~-----~~r-L~~l~~~l~~rr~~lv~el~~IypI~~~~~p~~~~  104 (278)
                      -++..+++++......+...++.|++...+....+.     ... .+-..+..+.|-.++..+....|+|++..+|....
T Consensus       120 ~~l~~~~Ealsk~~~~~~k~~~kL~~kr~q~~~~q~~l~k~~k~l~e~~~~l~a~re~fL~~~~~~~~~irq~~~~~s~i  199 (377)
T KOG2896|consen  120 SNLQRQIEALSKKRAHLEKTKQKLEDKRQQFNASQVKLQKQLKSLIELRNELVAKRELFLEQRIQDTFKIRQDGSPLSKI  199 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHhHHHhhhhhhhccCcchhee
Confidence            445555666666666666777777765555554332     111 22344567778889999999999999988654211


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCcceEEeceecCCCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccc
Q 023729          105 ELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRL  184 (278)
Q Consensus       105 ~~~~~p~~~~~g~~~~~~~~~~~~~tI~Gl~Lp~~~~~~~~~f~~~~~~~~isaaLgyvahlv~lls~yL~v~LpYpi~~  184 (278)
                          +|-        .... ++..|||||++||+.     .+|..+++ ..++|||||+||||++||.||.+||+|||.+
T Consensus       200 ----~~l--------~~~~-~~~v~tIrGl~lp~~-----~d~~~~s~-~~~aaALGylaHLv~~Is~~L~~pLRYPIl~  260 (377)
T KOG2896|consen  200 ----LPL--------QFSY-CHLVFTIRGLKLPFI-----EDKQNKSE-QETAAALGYLAHLVSMISKYLEVPLRYPILL  260 (377)
T ss_pred             ----ecC--------Cccc-chhhhhhhcccCCch-----hhhhccch-HHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence                110        0011 367899999999984     33344555 5799999999999999999999999999999


Q ss_pred             cCCcceeecCCCCCCCCCCccccccccCCCCCcccCcccCCCChhhHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHH
Q 023729          185 GGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLK  264 (278)
Q Consensus       185 ~gSrSyI~d~~~~~~~~~~~~~~~~~~~~~~~~~fPLf~~~~d~~~F~yav~LLnknI~qL~~~~Gl~~~~~~~tL~NL~  264 (278)
                      .||+|+|.|+++...+              ..|+||||.++.++.+|+||+||||+||+|||+++|++++++++||+||.
T Consensus       261 ~~Sks~I~D~i~~~~~--------------ttr~fply~k~~~~e~f~~glylL~qNiaqlr~~~gl~t~~ld~tl~~L~  326 (377)
T KOG2896|consen  261 AGSKSYIRDYIPDIET--------------TTREFPLYTKSQEIEQFEYGLYLLNQNIAQLRYDCGLPTPDLDQTLDNLD  326 (377)
T ss_pred             ccccceecccCCcccc--------------ccccccCccccchHHHHHHHHHHHhccHHHHHHHcCCCCccHHHhhhhHH
Confidence            9999999999986543              26899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccC
Q 023729          265 ELLRTIQS  272 (278)
Q Consensus       265 ~Ll~~~~s  272 (278)
                      +|+..+.-
T Consensus       327 d~~~~~~~  334 (377)
T KOG2896|consen  327 DFIELLDD  334 (377)
T ss_pred             HHHHHhhh
Confidence            99987653

>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]

Probab=99.39  E-value=2e-11  Score=111.49  Aligned_cols=88  Identities=25%  Similarity=0.228  Sum_probs=72.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccccCCcceeecCCCCCCCCCCccccccccCCCCCcccCcccCCCChhhH
Q 023729          152 EVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRA  231 (278)
Q Consensus       152 ~~~~isaaLgyvahlv~lls~yL~v~LpYpi~~~gSrSyI~d~~~~~~~~~~~~~~~~~~~~~~~~~fPLf~~~~d~~~F  231 (278)
                      |+-.|.+||.|++|||++||+||+|+||..+.+       +|.+-                           +.-.+..|
T Consensus       185 ~ay~i~aAltyt~QLv~lLS~ilnvrlP~kl~~-------~dfC~---------------------------e~ltke~f  230 (359)
T KOG4398|consen  185 DAYPIFAALTYTLQLVHLLSVILNVRLPEKLSH-------HDFCI---------------------------ERLTKESF  230 (359)
T ss_pred             cccchHHHHHHHHHHHHHHHHHhccCCchhhcc-------hhHHH---------------------------HHhhHHHH
Confidence            445799999999999999999999999999875       33321                           11245799


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCC--CccchHHHHHHHHHHccCC
Q 023729          232 AYAVFLLNKDIEQLLNYIGVKSL--GPRHVLANLKELLRTIQSP  273 (278)
Q Consensus       232 ~yav~LLnknI~qL~~~~Gl~~~--~~~~tL~NL~~Ll~~~~s~  273 (278)
                      ..+|.-||-||..||.+||+.-.  -..|||.||-.|..+..++
T Consensus       231 ~R~~s~Ln~nIiYLc~~q~v~l~~L~~~htl~NLial~s~~~~d  274 (359)
T KOG4398|consen  231 NRDWSTLNDNIIYLCIFQGVSLTKLKYTHTLHNLIALASFVVND  274 (359)
T ss_pred             HHHHHHHhhhHHHHHHHhccchhhccccchHHHHHHHhhhhHhh
Confidence            99999999999999999998765  4579999999998876553

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=99.04  E-value=1.6e-08  Score=95.46  Aligned_cols=99  Identities=24%  Similarity=0.325  Sum_probs=66.8

Q ss_pred             ceEEeceecCCCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHcCCCCC-CcccccCCcceeecCCCCCCCCCCccc
Q 023729          128 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLR-YPLRLGGSHTYINDYAPSIEPTSDLSS  206 (278)
Q Consensus       128 ~~tI~Gl~Lp~~~~~~~~~f~~~~~~~~isaaLgyvahlv~lls~yL~v~Lp-Ypi~~~gSrSyI~d~~~~~~~~~~~~~  206 (278)
                      .=||+|++|.-.+       +..-+-.+|+||+|++|.|+..||..+++.+. |.++|.||.|+|.+....         
T Consensus       150 fGTINGlRLGrl~-------~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~~y~l~P~Gs~S~I~~~~~~---------  213 (314)
T PF04111_consen  150 FGTINGLRLGRLP-------NVPVEWNEINAAWGQTALLLQTLAKKLNFKFQRYRLVPMGSFSKIEKLEGD---------  213 (314)
T ss_dssp             EEEETTEEE--BT-------TB---HHHHHHHHHHHHHHHHHHHHHCT---SSEEEE--GGG-EEEECS-----------
T ss_pred             eeeECCeeeccCC-------CCCCChHHHHHHHHHHHHHHHHHHHHhCCCcccceeEecCCCCEEEEeccC---------
Confidence            4589999997643       11223457999999999999999999999964 999999999999987531         


Q ss_pred             cccccCCCCCcccCcccCCC-------ChhhHHHHHHHHHHHHHHHHHhc
Q 023729          207 NIALSTNTKPAEFPLFLEGQ-------DATRAAYAVFLLNKDIEQLLNYI  249 (278)
Q Consensus       207 ~~~~~~~~~~~~fPLf~~~~-------d~~~F~yav~LLnknI~qL~~~~  249 (278)
                             .....||||..+.       ...+|..|+.-+-.-+.|++...
T Consensus       214 -------~~~~~~~ly~~~~~~~~~~f~~~~Fd~am~~~L~~~~q~~~~~  256 (314)
T PF04111_consen  214 -------KDKTTYPLYSSGSFSLGRLFSSRKFDKAMVAFLDCLQQLAEFV  256 (314)
T ss_dssp             --------TCEEEESS--SS----GGG--SHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------CCCeEEecccCCCchhhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence                   0246899998864       23499999998888888887544

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]

Probab=98.14  E-value=0.00011  Score=71.36  Aligned_cols=98  Identities=26%  Similarity=0.293  Sum_probs=73.5

Q ss_pred             ceEEeceecCCCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHcCCCCC-CcccccCCcceeecCCCCCCCCCCccc
Q 023729          128 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLR-YPLRLGGSHTYINDYAPSIEPTSDLSS  206 (278)
Q Consensus       128 ~~tI~Gl~Lp~~~~~~~~~f~~~~~~~~isaaLgyvahlv~lls~yL~v~Lp-Ypi~~~gSrSyI~d~~~~~~~~~~~~~  206 (278)
                      .=||.|++|.-.+..       .-+-+.|+||+|=++-++..++.=+|+.+- |.++++||.|||.-...          
T Consensus       283 fgtIN~FRLG~lp~~-------pVew~EINAA~GQ~vLLL~~l~~kig~~~~~y~lvp~GshSyI~~~~~----------  345 (447)
T KOG2751|consen  283 FGTINNFRLGRLPSV-------PVEWDEINAAWGQTVLLLHTLANKIGLNFVRYRLVPMGSHSYIKKRMV----------  345 (447)
T ss_pred             ccccccceeccccCC-------CcCHHHHHHHhhhHHHHHHHHHHhcCcccceeeeecccchhHHHHhcc----------
Confidence            346888888665311       113357999999999999999999999775 99999999999996642          


Q ss_pred             cccccCCCCCcccCcccCCCCh----hhHHHHHHHHHHHHHHHHHhc
Q 023729          207 NIALSTNTKPAEFPLFLEGQDA----TRAAYAVFLLNKDIEQLLNYI  249 (278)
Q Consensus       207 ~~~~~~~~~~~~fPLf~~~~d~----~~F~yav~LLnknI~qL~~~~  249 (278)
                             ..|+++|||..++-+    ++|+.|+-.-=--+.|+...+
T Consensus       346 -------~~~~el~l~~sgg~~~f~~tkfD~amvafLd~L~qf~~e~  385 (447)
T KOG2751|consen  346 -------NLPYELPLFQSGGLKFFWSTKFDKAMVAFLDCLKQFADEL  385 (447)
T ss_pred             -------CCCccchhhcCCCceeeeccccCHHHHHHHHHHHHHHHHH
Confidence                   247899999987633    588888776666666665443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=92.33  E-value=2.2  Score=42.18  Aligned_cols=88  Identities=15%  Similarity=0.136  Sum_probs=61.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhhhchHHHHHHHHHHHHH
Q 023729            2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQ   81 (278)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~~~~rL~~l~~~l~~rr   81 (278)
                      ++.+++-...+.+...+..+|.++|++.+.++..-...|.+...++...+.+|.+.+         .+|..++.+-+.+|
T Consensus        44 q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~---------~~l~~l~~q~r~qr  114 (420)
T COG4942          44 QKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLN---------ARLNALEVQEREQR  114 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH---------HHHHHHHHHHHHHH
Confidence            455666666777777777777777777777777766666666666666666666543         33445555668999


Q ss_pred             HHHHHHHHhhccccccC
Q 023729           82 QFMISQVSFLYPVKILV   98 (278)
Q Consensus        82 ~~lv~el~~IypI~~~~   98 (278)
                      .+|-.+|+.+|--..++
T Consensus       115 ~~La~~L~A~~r~g~~p  131 (420)
T COG4942         115 RRLAEQLAALQRSGRNP  131 (420)
T ss_pred             HHHHHHHHHHHhccCCC
Confidence            99999999999876544

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=91.82  E-value=3.4  Score=37.66  Aligned_cols=46  Identities=20%  Similarity=0.209  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHH
Q 023729           10 LLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQ   55 (278)
Q Consensus        10 ~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~   55 (278)
                      ..+.+...+++.+++.++..++++..+++.+...+..++..+..+.
T Consensus        63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~  108 (302)
T PF10186_consen   63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS  108 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444444444444444433333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK11637 AmiB activator; Provisional

Probab=91.74  E-value=3.8  Score=40.16  Aligned_cols=55  Identities=13%  Similarity=0.230  Sum_probs=34.5

Q ss_pred             HHHHHhhhHHHHHHHhHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhccc
Q 023729           38 RSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPV   94 (278)
Q Consensus        38 ~~l~~~~~~l~~a~~~l~e~~~~L~~e~~~~rL~~l~~~l~~rr~~lv~el~~IypI   94 (278)
                      ..+......+...+.++.+.+..+..-  ...+..++..+...+..+-..+..+|--
T Consensus        82 ~qi~~~~~~i~~~~~~i~~~~~ei~~l--~~eI~~~q~~l~~~~~~l~~rlra~Y~~  136 (428)
T PRK11637         82 EAISQASRKLRETQNTLNQLNKQIDEL--NASIAKLEQQQAAQERLLAAQLDAAFRQ  136 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            333334444444444555444444432  2457788888888998898889988863

>PRK10884 SH3 domain-containing protein; Provisional

Probab=87.42  E-value=12  Score=33.50  Aligned_cols=54  Identities=9%  Similarity=0.086  Sum_probs=28.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHH
Q 023729            2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQ   55 (278)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~   55 (278)
                      |.|+.+-+..+.++..+...+.++.+.+..+++.+.......-+.|.....+|+
T Consensus        92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~  145 (206)
T PRK10884         92 RTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLK  145 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555666666555555555555555555555444433333444444443

>PRK11637 AmiB activator; Provisional

Probab=82.22  E-value=25  Score=34.48  Aligned_cols=11  Identities=27%  Similarity=0.280  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHH
Q 023729           77 LRMRQQFMISQ   87 (278)
Q Consensus        77 l~~rr~~lv~e   87 (278)
                      +...+..++.+
T Consensus       164 i~~~d~~~l~~  174 (428)
T PRK11637        164 LNQARQETIAE  174 (428)
T ss_pred             HHHHHHHHHHH
Confidence            33344444443

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=82.18  E-value=36  Score=30.29  Aligned_cols=89  Identities=12%  Similarity=0.051  Sum_probs=52.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHhHHH-HHHHhhhhh--hchHHHHHHHHH
Q 023729            2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTA-LSVARKRLQE-SNRLLAGEK--GYGHLQKLQKML   77 (278)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~-l~~a~~~l~e-~~~~L~~e~--~~~rL~~l~~~l   77 (278)
                      ..-+++|+.++..-...+++++++.++.+++-..++......... ++.|+...+. ....+...+  ....+...+.++
T Consensus        79 ~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I  158 (204)
T PRK09174         79 GGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARI  158 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356889999999999999999988888887777666444433322 2233333222 111111111  123455666777


Q ss_pred             HHHHHHHHHHHHh
Q 023729           78 RMRQQFMISQVSF   90 (278)
Q Consensus        78 ~~rr~~lv~el~~   90 (278)
                      ...|.....+|..
T Consensus       159 ~~ek~~A~~el~~  171 (204)
T PRK09174        159 AAIKAKAMADVGS  171 (204)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777776666553

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=81.50  E-value=27  Score=37.68  Aligned_cols=71  Identities=24%  Similarity=0.383  Sum_probs=46.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHH-HHhhhhhhchHHHH
Q 023729            2 RERLEARRLLMEKMSMRSKVEK---EDAKNQEERLSMEVRSLLVAGTALSVARKRLQESN-RLLAGEKGYGHLQK   72 (278)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~l~---~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~-~~L~~e~~~~rL~~   72 (278)
                      |++++..+.++.++.++.....   ++.....|+|+.+-..+...+..++.|+..++|+. ..+..++.+..++.
T Consensus       357 r~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klke  431 (980)
T KOG0980|consen  357 RRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKE  431 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            4556666666666665544433   44444447788888888888888888887777755 55666655655553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	278
4ddp_A	210	Beclin-1; ECD, autophagy, membrane binding, membra	98.89
3vp7_A	220	Vacuolar protein sorting-associated protein 30; ta	98.67
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	83.02

>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}

Probab=98.89  E-value=5.6e-09  Score=91.80  Aligned_cols=97  Identities=23%  Similarity=0.304  Sum_probs=78.9

Q ss_pred             ceEEeceecCCCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHcCCCC-CCcccccCCcceeecCCCCCCCCCCccc
Q 023729          128 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAPSIEPTSDLSS  206 (278)
Q Consensus       128 ~~tI~Gl~Lp~~~~~~~~~f~~~~~~~~isaaLgyvahlv~lls~yL~v~L-pYpi~~~gSrSyI~d~~~~~~~~~~~~~  206 (278)
                      .=||+|+.|.-.+.      .+. +-++|+||+|++|.|+..||..+++.+ +|.++|.||.|+|.+...          
T Consensus        42 fgtINglRLGrlp~------~~V-~W~EINAAwGq~~LLL~tla~~l~~~f~~y~L~P~GS~S~I~~~~~----------  104 (210)
T 4ddp_A           42 FGTINNFRLGRLPS------VPV-EWNEINAAWGQTVLLLHALANKMGLKFQRYRLVPYGNHSYLESLTD----------  104 (210)
T ss_dssp             EEEETTEECCCBTT------BCC-CHHHHHHHHHHHHHHHHHHHHHHTCCCSSEEEECCGGGCEEEESSC----------
T ss_pred             ceeEcccccCCCCC------CCC-CHHHHHHHHHHHHHHHHHHHHHcCCCccceeEEecCCcceeeEecC----------
Confidence            56899999987541      112 335799999999999999999999999 699999999999987632          


Q ss_pred             cccccCCCCCcccCcccCCCCh----hhHHHHHHHHHHHHHHHHHhc
Q 023729          207 NIALSTNTKPAEFPLFLEGQDA----TRAAYAVFLLNKDIEQLLNYI  249 (278)
Q Consensus       207 ~~~~~~~~~~~~fPLf~~~~d~----~~F~yav~LLnknI~qL~~~~  249 (278)
                              ....||||..+.-+    .+|+.|+.-+-.-+.|++...
T Consensus       105 --------~~~~l~Ly~sg~~~~f~~~kFD~Am~afL~cl~q~~~~~  143 (210)
T 4ddp_A          105 --------KSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEV  143 (210)
T ss_dssp             --------TTCCEESCCCSSCGGGCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------CCeEEeceeCCCccccccccccHHHHHHHHHHHHHHHHH
Confidence                    23479999876433    499999999999999998766

>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}

Probab=98.67  E-value=4e-08  Score=86.91  Aligned_cols=109  Identities=21%  Similarity=0.223  Sum_probs=76.1

Q ss_pred             ceEEeceecCCCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHcCCCC-CCcccccCCcceeecCC-CCCCCCCCcc
Q 023729          128 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYA-PSIEPTSDLS  205 (278)
Q Consensus       128 ~~tI~Gl~Lp~~~~~~~~~f~~~~~~~~isaaLgyvahlv~lls~yL~v~L-pYpi~~~gSrSyI~d~~-~~~~~~~~~~  205 (278)
                      .=||+|+.|.-.+.      ... +-.+|+||+|++|.|+..||..|++.+ .|.++|+||.|+|.+.. +..+-  +..
T Consensus        16 fgTINglRLGrl~~------~~V-~W~EINAAwGq~~LLL~tla~kl~~~f~~Y~L~PmGS~S~I~~~~~~~~~~--~~~   86 (220)
T 3vp7_A           16 FATINGLRLGSIPE------SVV-PWKEINAALGQLILLLATINKNLKINLVDYELQPMGSFSKIKKRMVNSVEY--NNS   86 (220)
T ss_dssp             EEEETTEEECCBTT------BCC-CHHHHHHHHHHHHHHHHHHHHHTTCCCSSEEEECCGGGCEEEEEC-----------
T ss_pred             ceeEcccccCCCCC------CCC-CHHHHHHHHHHHHHHHHHHHHHhCCCcccceEEeCCCcceEeecccccccc--ccc
Confidence            56899999987541      112 235799999999999999999999999 59999999999999842 11000  000


Q ss_pred             ccccccCCCCCcccCcccCCC--------ChhhHHHHHHHHHHHHHHHHHh
Q 023729          206 SNIALSTNTKPAEFPLFLEGQ--------DATRAAYAVFLLNKDIEQLLNY  248 (278)
Q Consensus       206 ~~~~~~~~~~~~~fPLf~~~~--------d~~~F~yav~LLnknI~qL~~~  248 (278)
                         ..........||||..+.        -..+|+.|+--+-.-|.|+...
T Consensus        87 ---~~~~~~~~~~l~Ly~s~~~~lg~~f~~~~kFD~aMvafL~cl~ql~~~  134 (220)
T 3vp7_A           87 ---TTNAPGDWLILPVYYDENFNLGRIFRKETKFDKSLETTLEIISEITRQ  134 (220)
T ss_dssp             ---------CEEEEESSCCC-----------CHHHHHHHHHHHHHHHHHHH
T ss_pred             ---ccccCCCCeEEecccCCCcccccccccccchhHHHHHHHHHHHHHHHH
Confidence               000011346799999864        1249999999999888888873

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=83.02  E-value=13  Score=28.20  Aligned_cols=61  Identities=18%  Similarity=0.102  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhh
Q 023729            4 RLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGE   64 (278)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e   64 (278)
                      ..+...+|.+++....+.+.+...+..+++..-.+.+..-..+|..+..+|.+++..|...
T Consensus        17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~   77 (101)
T 3u1c_A           17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA   77 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555555554444444544444444445567778888888888777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00