Citrus Sinensis ID: 023753

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQVLQRTRSVSLSDDHHHHQSRKHKLLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAKESSSRIQRLFSSSGLGEKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHccccccHHHHHcccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccEEEccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mllrssstpilhswlpqyskdsssssssnsstepeLQVLQRtrsvslsddhhhhqsrkHKLLTTIYQRKEIrdsqmnkkgniralkpppashshdhhqakesSSRIQRLFsssglgekllkkddddekegcevedgggsYVQTMVMggglgnnggkicdgrgggdaggggggsgfsgsnnnysnnnhgssstdAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRailanpsdgniLSLYADLIWQAHKDASRAESYFDQAVKSAPDDW
Flexible Loop (DISEMBL)
mllrssstpilhswlpqysKDSSSSSSSNSSTEPELQVLQRTRSVslsddhhhhqsrkhkllttiYQRKEIRDSQMNKKGNIRALKPPPASHShdhhqakesssriqrlfsssglgekllkkddddekegcevedgggsyVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDqavksapddw
Low Complexity Region (SEG)
MLLRSSSTPILHSWLPQYSKDsssssssnssTEPELQVLQRTRSVSLSDDHHHHQSRKHKLLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAKEsssriqrlfsssglgekllkkddddekegcevedgggSYVQTMVMggglgnnggkicdgrgggdaggggggsgfsgsnnnysnnnhgsssTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW
Disordered region (IsUnstruct)
*******************************************************************************************************************************************YVQTMVMGG**********************************************YYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK********************
Disordered Region (DISOPRED)
MLLRSSSTPILH*****************************************************************************************************GL**********************GSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP***
Disordered Region (DISEMBL)
MLLRSSSTPILHSWLP********************************************LLTTIYQRKEIRDSQMNKKGNIRALK*********************RLFSSSGLGEKLL*************EDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH*********************
Disordered Region (DISPRO)
****************************************************************************************************************************************GGSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSA****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQVLQRTRSVSLSDDHHHHQSRKHKLLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAKESSSRIQRLFSSSGLGEKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
255553177	305	conserved hypothetical protein [Ricinus	0.891	0.809	0.515	1e-55
118486453	304	unknown [Populus trichocarpa]	0.859	0.782	0.446	4e-47
449436142	319	PREDICTED: uncharacterized protein LOC10	0.913	0.793	0.486	3e-46
225442971	306	PREDICTED: uncharacterized protein LOC10	0.895	0.810	0.453	1e-44
297743453	289	unnamed protein product [Vitis vinifera]	0.855	0.820	0.456	1e-43
225445531	288	PREDICTED: uncharacterized protein LOC10	0.826	0.795	0.441	2e-43
356519331	315	PREDICTED: uncharacterized protein LOC10	0.898	0.790	0.452	7e-43
147823174	306	hypothetical protein VITISV_012768 [Viti	0.895	0.810	0.439	9e-43
224090403	304	predicted protein [Populus trichocarpa]	0.884	0.805	0.438	8e-38
217073634	292	unknown [Medicago truncatula]	0.361	0.342	0.72	1e-37

>gi|255553177|ref|XP_002517631.1| conserved hypothetical protein [Ricinus communis] gi|223543263|gb|EEF44795.1| conserved hypothetical protein [Ricinus communis]

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 148/287 (51%), Positives = 184/287 (64%), Gaps = 40/287 (13%)

Query: 1   MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQVLQRTRSVSLSDDHHHHQSRKHK 60
           MLLRSSSTPIL+SWLP          S  SS EPE Q L+RT+S+SL+       S   K
Sbjct: 1   MLLRSSSTPILNSWLPH---------SKESSPEPEFQALKRTKSISLTGSFRSQPSFDDK 51

Query: 61  LLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSH-----DHHQAKES---SSRIQRLFSS 112
            +TT    + ++++ + K  N    +PP +         D    KE+   SSRIQR+FSS
Sbjct: 52  KVTT----QTLQETNLQKIKNASHGRPPQSKKQQCKKDSDDEIKKEAIVPSSRIQRMFSS 107

Query: 113 SGLGEKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGG---G 169
           SGLG ++    +DD+ +  E E+G G  +QT+V+GGG G+ GG    G  GG        
Sbjct: 108 SGLGGRVA---NDDDDDDDEKEEGRG--LQTLVVGGGSGSGGGGGVCGGSGGRRSDGGES 162

Query: 170 GGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEE 229
            GGS F           +G+ STDAYY+KMI A+PGNALLLGNYA+FLKEV+GDFAKAEE
Sbjct: 163 NGGSEF-----------YGNESTDAYYQKMISADPGNALLLGNYAKFLKEVKGDFAKAEE 211

Query: 230 LCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276
            CGRAILANPSDGN+LS+YADLIWQ  KDA RAESYFDQAVK+AP+D
Sbjct: 212 FCGRAILANPSDGNVLSVYADLIWQKEKDAERAESYFDQAVKTAPED 258

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486453|gb|ABK95066.1| unknown [Populus trichocarpa]

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 129/289 (44%), Positives = 163/289 (56%), Gaps = 51/289 (17%)

Query: 1   MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPE-LQVLQRTRSVSLS---------DD 50
           MLLRSSSTP L+SW+P +SK+ S         EPE +  +Q+TR +SL+           
Sbjct: 1   MLLRSSSTPFLNSWIPPHSKEPSP--------EPESVHQIQKTRPISLTASSSSPFSSIS 52

Query: 51  HHHHQSRKHKLLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAKESSSRIQRLF 110
              H S K   +T  +   ++RD  + K+                    K S+  +  + 
Sbjct: 53  SQDHDSIKR--MTRAFSEADLRDLSVPKR--------------------KPSNGILNGIP 90

Query: 111 SSSGLGEKLLKKDDDDEKEGCEV-EDGGGS--YVQTMVMGGGLGNNGGKICDGRGGGDAG 167
               + EK+   +     EGCE  E G G    ++ +V GGG    G K C GRG  D G
Sbjct: 91  VDEEVEEKVSFWEGGLFFEGCEAGEKGEGDNGVLEVLVTGGGGDGGGRKFCGGRGRSDFG 150

Query: 168 GGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKA 227
             GG    SGS  +    N G  +TDAYY+ MIEANPGN L L NYARFLKEVR DF KA
Sbjct: 151 DDGG----SGSRES----NEGIETTDAYYQTMIEANPGNPLFLRNYARFLKEVRLDFVKA 202

Query: 228 EELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276
           EE CGRAILANP+D ++LS+YADLIWQ+HKDASRAESYF +AVK+APDD
Sbjct: 203 EEYCGRAILANPNDADVLSMYADLIWQSHKDASRAESYFLRAVKAAPDD 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436142|ref|XP_004135853.1| PREDICTED: uncharacterized protein LOC101208051 [Cucumis sativus] gi|449491043|ref|XP_004158782.1| PREDICTED: uncharacterized LOC101208051 [Cucumis sativus]

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 141/290 (48%), Positives = 181/290 (62%), Gaps = 37/290 (12%)

Query: 1   MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQVLQRTRSVSLSDDHHH-----HQ 55
           MLLR++STPIL+SWL Q+    SS S SN     ++  LQRT+S+SL    H        
Sbjct: 1   MLLRTNSTPILNSWLHQFK---SSPSESN-----QIHHLQRTKSISLISSFHLPPPSVST 52

Query: 56  SRKHKLLTTIYQ------RKEIRDSQMNKKGNIRALKPPPASHSHDHH---QAKESSSRI 106
              +++   + +      RK+I    + K   ++           D H    +  SSS I
Sbjct: 53  ESSNRVTQNLLESDSTDPRKKI---PITKSSKVKVKSRENGVSVRDQHLKPTSDSSSSSI 109

Query: 107 QRLFSSSGLGEKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDA 166
             +F +SGLG K    +  DEK            +QT+V+GGG+GN+GG++C G G G  
Sbjct: 110 HGVFLNSGLGLKFPNDEVCDEKRD-------ACILQTLVVGGGMGNDGGRVCGGSGRGSD 162

Query: 167 GGGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAK 226
           GGGGG +G SG NN+     HGS+STDAYY+KMIEANP NALLLGNYA+FLKEV GDF+K
Sbjct: 163 GGGGGDNGRSGFNNH-----HGSNSTDAYYQKMIEANPNNALLLGNYAKFLKEVHGDFSK 217

Query: 227 AEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276
           AEE CGRAILA+P+D ++LSLYADLIW   +DA RAE+YFDQAVKSAPDD
Sbjct: 218 AEEFCGRAILADPNDASVLSLYADLIWHTQRDARRAETYFDQAVKSAPDD 267

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442971|ref|XP_002267739.1| PREDICTED: uncharacterized protein LOC100243938 [Vitis vinifera]

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 128/282 (45%), Positives = 160/282 (56%), Gaps = 34/282 (12%)

Query: 1   MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQVLQRTRSVSLSDDHHHHQSRKHK 60
           MLLRSSSTPIL+SW+  Y KD+S  +         +  + +T+S+SLS      QS  H 
Sbjct: 1   MLLRSSSTPILNSWIQPYGKDTSPETDL-------VHQIPKTKSLSLSASF---QSPPHT 50

Query: 61  LLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAK------ESSSRIQRLFSSSG 114
             +       ++  +M +  +   L+ PP  ++H+   +       E    I+ L SSSG
Sbjct: 51  APSITTSAGSLQ--KMARALSETDLRDPPKRNTHEKWFSPPTVDEGEEQDSIRSLLSSSG 108

Query: 115 LGEKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSG 174
           LGE           E C VEDGG + ++ M  G      G     G G G +GG G G G
Sbjct: 109 LGES----------ERCGVEDGGPATLE-MGGGIRGNGGGIFGGGGYGKGSSGGDGDGHG 157

Query: 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA 234
                +NY     G  STD YY+KMIEANP NAL LGNYA+FLKEVRGD  KAEE CGRA
Sbjct: 158 GGAYESNY-----GHESTDVYYQKMIEANPENALFLGNYAKFLKEVRGDLVKAEEYCGRA 212

Query: 235 ILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276
           IL NPSDGN+LS YADLIW   KDA RAE+YF+QAV+ APDD
Sbjct: 213 ILVNPSDGNVLSFYADLIWNNQKDAQRAETYFNQAVRVAPDD 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743453|emb|CBI36320.3| unnamed protein product [Vitis vinifera]

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/276 (45%), Positives = 157/276 (56%), Gaps = 39/276 (14%)

Query: 1   MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQVLQRTRSVSLSDDHHHHQSRKHK 60
           MLLRSSSTPIL+SW+  Y KD+S  +         +  + +T+S+SLS      QS  H 
Sbjct: 1   MLLRSSSTPILNSWIQPYGKDTSPETDL-------VHQIPKTKSLSLSASF---QSPPHT 50

Query: 61  LLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAKESSSRIQRLFSSSGLGEKLL 120
             +       ++  +M +  +   L+ PP  ++H+           + L SSSGLGE   
Sbjct: 51  APSITTSAGSLQ--KMARALSETDLRDPPKRNTHE-----------KCLLSSSGLGES-- 95

Query: 121 KKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSGFSGSNN 180
                   E C VEDGG + ++ M  G      G     G G G +GG G G G     +
Sbjct: 96  --------ERCGVEDGGPATLE-MGGGIRGNGGGIFGGGGYGKGSSGGDGDGHGGGAYES 146

Query: 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240
           NY     G  STD YY+KMIEANP NAL LGNYA+FLKEVRGD  KAEE CGRAIL NPS
Sbjct: 147 NY-----GHESTDVYYQKMIEANPENALFLGNYAKFLKEVRGDLVKAEEYCGRAILVNPS 201

Query: 241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276
           DGN+LS YADLIW   KDA RAE+YF+QAV+ APDD
Sbjct: 202 DGNVLSFYADLIWNNQKDAQRAETYFNQAVRVAPDD 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445531|ref|XP_002285275.1| PREDICTED: uncharacterized protein LOC100257716 [Vitis vinifera] gi|297738966|emb|CBI28211.3| unnamed protein product [Vitis vinifera]

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/283 (44%), Positives = 167/283 (59%), Gaps = 54/283 (19%)

Query: 1   MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPEL--QVLQRTRSVSLSDDHHHHQSRK 58
           MLLRSSSTPIL+SW P          S  SS+EPE+  Q+L  +RS+SL+          
Sbjct: 1   MLLRSSSTPILNSWPPN---------SKESSSEPEMVPQILL-SRSISLTTSSLSSVEGS 50

Query: 59  HKLLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAKESSSRIQRLFSSSGLGEK 118
            K ++      ++R+  + K+  I                    +  + RL S       
Sbjct: 51  SKKMSRALSETDLRELSLPKRKPI--------------------TKTVNRLSS------- 83

Query: 119 LLKKDDDDEKEGCEVEDGGGSYVQTMVMGG---GLGNNGGKICDGR--GGGDAGGGGGGS 173
            L  D+ +E++ C +        +T   GG   G+G++ G  C+G    GG  GGGG   
Sbjct: 84  -LPVDEREEEDSCPIS-------RTASYGGLWWGVGSDAG--CEGVCVEGGSEGGGGSDG 133

Query: 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGR 233
           G++   + Y ++N+G+ + ++YY  MIEANPGNALLLGNYARFLKEVRGD+ KAEE CGR
Sbjct: 134 GYAHGKSGYGDSNNGNGNMESYYRTMIEANPGNALLLGNYARFLKEVRGDYIKAEEYCGR 193

Query: 234 AILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276
           AILANP+DGNILSL+ADLIWQ HKD+ RAESYFDQAVK++PDD
Sbjct: 194 AILANPNDGNILSLFADLIWQVHKDSDRAESYFDQAVKASPDD 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519331|ref|XP_003528326.1| PREDICTED: uncharacterized protein LOC100784802 [Glycine max]

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 128/283 (45%), Positives = 161/283 (56%), Gaps = 34/283 (12%)

Query: 1   MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPE--LQVLQRTRSVSLSDDHHHHQSRK 58
           MLLRSSS PIL S L  YSK+  S        EPE  L + +   ++SLS          
Sbjct: 1   MLLRSSSAPILTSLL-FYSKEFPS--------EPEHILHLPKTASALSLS-----QSLVD 46

Query: 59  HKLLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAK--ESSSRIQRLFSSSGLG 116
             L  +   R++ R    N   N +++K        D  Q    ++   I  LFSS  L 
Sbjct: 47  IDLKNSSSPRRKNRVPLSNVPNNQQSIKINERYEGKDPQQKTFMKAKPSILELFSSFDLD 106

Query: 117 EKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKIC---DGRGGGDAGGGGGGS 173
           + +L    D E+ G   +D   S++QT VMG G+G++GG IC   +G G G  GG G   
Sbjct: 107 KGVL----DHEECGAGKKD---SWLQTSVMGAGMGSDGGWICGGCNGSGRGSDGGHGRRW 159

Query: 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGR 233
           GF         N+HG   TDAYY+ MIEANP +ALLLGNYA+FLKEV  D+ KA+E   R
Sbjct: 160 GFD------EGNDHGRDRTDAYYQNMIEANPSDALLLGNYAKFLKEVCEDYPKAKEYLER 213

Query: 234 AILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276
           AILANP DG+ILSLYA+LIWQ  KDA +AE YFDQA+KSAPDD
Sbjct: 214 AILANPDDGHILSLYAELIWQTEKDADQAEGYFDQAIKSAPDD 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147823174|emb|CAN73025.1| hypothetical protein VITISV_012768 [Vitis vinifera]

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 124/282 (43%), Positives = 153/282 (54%), Gaps = 34/282 (12%)

Query: 1   MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQVLQRTRSVSLSDDHHHHQSRKHK 60
           MLLRSSSTPIL+SW+  Y KD+S          PE  ++ +              S  H 
Sbjct: 1   MLLRSSSTPILNSWIQPYGKDTS----------PETDLVHQIPKTKSLSLSASFXSPPHT 50

Query: 61  LLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAK------ESSSRIQRLFSSSG 114
             +       ++  +M +  +   L+ PP  ++H+   +       E    I+ L SSSG
Sbjct: 51  APSITTSAGSLQ--KMARALSETDLRDPPKRNTHEKWFSPPTVDEGEEQDSIRSLLSSSG 108

Query: 115 LGEKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSG 174
           LGE           E C VEDGG + ++ M  G      G     G G G +GG G G G
Sbjct: 109 LGES----------ERCGVEDGGPATLE-MGGGIRGNGGGIFGGGGYGKGSSGGDGDGHG 157

Query: 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA 234
                +NY     G  STD YY+KMIEANP NAL LGNYA+FLKEVRGD  KAEE CGRA
Sbjct: 158 GGAYESNY-----GHESTDVYYQKMIEANPENALFLGNYAKFLKEVRGDLVKAEEYCGRA 212

Query: 235 ILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276
           IL NPSDGN+LS YADLIW   KDA RAE+YF+QAV+ APDD
Sbjct: 213 ILVNPSDGNVLSFYADLIWNNQKDAQRAETYFNQAVRVAPDD 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090403|ref|XP_002308981.1| predicted protein [Populus trichocarpa] gi|222854957|gb|EEE92504.1| predicted protein [Populus trichocarpa]

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 125/285 (43%), Positives = 157/285 (55%), Gaps = 40/285 (14%)

Query: 1   MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPE-LQVLQRTRSVSLSDDHHHHQSRKH 59
           MLLRSSSTPIL++W+P +SK+ S         EPE L  +Q++RS+SL+       S   
Sbjct: 1   MLLRSSSTPILNTWIPPHSKEPS--------PEPESLHQIQKSRSISLTASSSSSFSSIS 52

Query: 60  -------KLLTTIYQRKEIRDSQMNK-KGNIRALKPPPASHSHDHHQAKESSSRIQRLFS 111
                  K +T  +   ++RD  + K K + R L       S D    +E   ++   F 
Sbjct: 53  SQDNDSIKRMTRAFSETDLRDLSVPKRKPSNRILN----GISVDEEVEEEVEKKVS--FL 106

Query: 112 SSGLGEKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGG 171
            SG              EGCEV   G S        G LG          GGG   GGGG
Sbjct: 107 ESGWF-----------FEGCEVGVKGQSD------SGMLGVMVTGGGSEGGGGKFYGGGG 149

Query: 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELC 231
                   + +  +N G  STD YY+KMIEA+PGN LLL NYA+FLKEVR DF KAEE C
Sbjct: 150 SDFGDDGGSGFGESNKGIESTDVYYQKMIEADPGNPLLLSNYAKFLKEVRADFVKAEEYC 209

Query: 232 GRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276
           GRAILA+P+D ++LS+YADLIW + K ASRAESYFDQAVK+APDD
Sbjct: 210 GRAILASPNDADVLSMYADLIWHSQKHASRAESYFDQAVKAAPDD 254

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073634|gb|ACJ85177.1| unknown [Medicago truncatula]

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/100 (72%), Positives = 85/100 (85%)

Query: 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL 236
           G  + + ++NHG+ STD YY  MIEANPGN L LGNYA++LKEVR D+ KAEE CGRAIL
Sbjct: 147 GGVSRFGDSNHGNDSTDLYYRTMIEANPGNPLFLGNYAKYLKEVRKDYVKAEEYCGRAIL 206

Query: 237 ANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276
           ANP+DGN+LSLYADLIW+ HKDA RAE+YFDQAVK+APDD
Sbjct: 207 ANPNDGNVLSLYADLIWECHKDAPRAETYFDQAVKAAPDD 246

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:2016229	305	AT1G80130 [Arabidopsis thalian	0.306	0.278	0.658	7.2e-36
TAIR|locus:2149314	290	AT5G20190 "AT5G20190" [Arabido	0.306	0.293	0.670	3.4e-34
TAIR|locus:2127781	238	AT4G32340 "AT4G32340" [Arabido	0.303	0.352	0.623	1.6e-24
TAIR|locus:2141030	274	AT4G17940 "AT4G17940" [Arabido	0.296	0.299	0.548	2.1e-20
TAIR|locus:2197768	310	TPR4 "tetratricopeptide repeat	0.292	0.261	0.451	4.2e-14
TAIR|locus:2025067	552	AT1G07280 "AT1G07280" [Arabido	0.299	0.150	0.385	1.1e-10
TAIR|locus:2060669	536	AT2G29670 [Arabidopsis thalian	0.299	0.154	0.385	1.2e-09
TAIR|locus:2075616	515	AT3G47080 [Arabidopsis thalian	0.299	0.161	0.349	1.1e-05

TAIR|locus:2016229 AT1G80130 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 7.2e-36, Sum P(2) = 7.2e-36
 Identities = 56/85 (65%), Positives = 68/85 (80%)

Query:   192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
             TD YY +MI++NPGN+LL GNYA+FLKEV+GD  KAEE C RAIL N +DGN+LSLYADL
Sbjct:   165 TDTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADL 224

Query:   252 IWQAHKDASRAESYFDQAVKSAPDD 276
             I   H+D  RA SY+ QAVK +P+D
Sbjct:   225 ILHNHQDRQRAHSYYKQAVKMSPED 249

GO:0016020 "membrane" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2149314 AT5G20190 "AT5G20190" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
 Identities = 57/85 (67%), Positives = 74/85 (87%)

Query:   192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
             TD +Y KMIEANPGN + L NYA+FLKEVR D+ KAEE CGRAIL +P+DGN+L++YA+L
Sbjct:   156 TDVHYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAEL 215

Query:   252 IWQAHKDASRAESYFDQAVKSAPDD 276
             +W+ HKD+SRAE+YF+QAV +AP+D
Sbjct:   216 VWKIHKDSSRAENYFNQAVAAAPED 240

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2127781 AT4G32340 "AT4G32340" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 53/85 (62%), Positives = 66/85 (77%)

Query:   193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-DGNILSLYADL 251
             D YYE+MI+  PG+ LLL NYARFLKEV+GD  KAEE C RA+L+    DG +LS+Y DL
Sbjct:   111 DGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYGDL 170

Query:   252 IWQAHKDASRAESYFDQAVKSAPDD 276
             IW+ H D  RA+SY+DQAV+S+PDD
Sbjct:   171 IWKNHGDGVRAQSYYDQAVQSSPDD 195

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2141030 AT4G17940 "AT4G17940" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 45/82 (54%), Positives = 57/82 (69%)

Query:   195 YYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254
             YY +M+ +NP N+LLL NY +FL EV  D   AEE  GRAIL NP DG  LS+Y  LIW+
Sbjct:   153 YYREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWE 212

Query:   255 AHKDASRAESYFDQAVKSAPDD 276
               +D  RA+ YFDQAV ++P+D
Sbjct:   213 TKRDEKRAQGYFDQAVNASPND 234

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2197768 TPR4 "tetratricopeptide repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 4.2e-14, P = 4.2e-14
 Identities = 37/82 (45%), Positives = 56/82 (68%)

Query:   195 YYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254
             YY+ M+E  P + LLL NYA+FL E +GD + AEE   +  +  PSDG  L+ Y  L+ +
Sbjct:   124 YYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGVALANYGRLVMK 182

Query:   255 AHKDASRAESYFDQAVKSAPDD 276
              H+D ++A SYF++AV+++PDD
Sbjct:   183 LHQDEAKAMSYFERAVQASPDD 204

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2025067 AT1G07280 "AT1G07280" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 32/83 (38%), Positives = 48/83 (57%)

Query:   192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
             T+  Y+  +   PGN LLL NYA+FL  +  D+ +AE+   RA  A P+D   L+ YA  
Sbjct:   435 TELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATF 494

Query:   252 IWQAHKDASRAESYFDQAVKSAP 274
             +W+A  D  RAE  + +A+ + P
Sbjct:   495 LWRARNDIWRAEETYLEAISADP 517

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

TAIR|locus:2060669 AT2G29670 [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 32/83 (38%), Positives = 43/83 (51%)

Query:   192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
             T+  Y+  +   P N LLL NYA+FL  V  D  +AEE   RA+   P D    S YA  
Sbjct:   420 TELMYQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKDAEAFSKYATF 479

Query:   252 IWQAHKDASRAESYFDQAVKSAP 274
             +W+A  D   AE  F +A+ + P
Sbjct:   480 LWRARDDLWAAEETFLEAIDADP 502

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2075616 AT3G47080 [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 29/83 (34%), Positives = 41/83 (49%)

Query:   192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
             T+  Y+  +   P N LLL NYA+FL  V  D  +AE    +AI +   D    S YA  
Sbjct:   400 TELLYKIGLAQEPDNHLLLANYAQFLYLVTQDHERAENCFKKAIESEDVDAETYSKYAIF 459

Query:   252 IWQAHKDASRAESYFDQAVKSAP 274
             +W+   D   AE  F +A+ + P
Sbjct:   460 LWKVRNDLWAAEENFLEAISADP 482

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00000340001 SubName- Full=Chromosome chr9 scaffold_104, whole genome shotgun sequence; (306 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	277
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	6e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	3e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-04
PHA00370	297	PHA00370, III, attachment protein	0.001
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 195 YYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254
           YYEK +E +P NA    N A    +  G + +A E   +A+  +P +           ++
Sbjct: 22  YYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80

Query: 255 AHKDASRAESYFDQAVKSAPD 275
             K    A   +++A++  P+
Sbjct: 81  LGKYE-EALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 45.8 bits (109), Expect = 6e-07
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY 265
           NA  L N    L +  GD+ +A E   +A+  +P +       A    +  KD   A   
Sbjct: 2   NAEALKNLGNALFK-LGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 266 FDQAVKSAP 274
            ++A++  P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP 239
             YEK +E +P NA    N A    ++  D+ +A E   +A+  +P
Sbjct: 24  EAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276
            GD+ +A      A+   P     L L  + + +     + A +    A+ + PDD
Sbjct: 10  AGDYDEALAALEAALARYPLAAEALLLLGEALLRQ-GRLAEAAALLRAALAADPDD 64

Length = 65

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 7/79 (8%)

Query: 203 NPGNALLLGNYARFLKEVRGDFAKAEELCGRAI----LANPSDGNILSLYADL--IWQAH 256
           +P  A  L N A  L+   GD+ +A EL  +A+                  +L  ++ A 
Sbjct: 1   HPDLAAALNNLALVLRR-LGDYDEALELLEKALELARELGEDHPETARALNNLARLYLAL 59

Query: 257 KDASRAESYFDQAVKSAPD 275
            D   A  Y ++A+     
Sbjct: 60  GDYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 2/85 (2%)

Query: 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL-- 251
              EK +  +P   L     A       GD+ +A EL  +A+  +P    +      L  
Sbjct: 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGA 175

Query: 252 IWQAHKDASRAESYFDQAVKSAPDD 276
           + +A      A    ++A+K  PDD
Sbjct: 176 LLEALGRYEEALELLEKALKLNPDD 200

Length = 291

>gnl|CDD|164795 PHA00370, III, attachment protein

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 28/73 (38%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 135 DGGGSYVQTMVMGG--GLGNNGGKICDGRGGGDAGGGGGGSGFSGSNNNYSNNNHGSSST 192
           DGGG+       GG  G GN GG    G  GG  GGG  G G  G +   S    G  + 
Sbjct: 85  DGGGTGEGGSDTGGDTGGGNTGGGSGGGDTGGSGGGGSDGGGSEGGSTGKSLTKEGVGAG 144

Query: 193 DAYYEKMIEANPG 205
           D  Y KM  AN  
Sbjct: 145 DFDYPKMANANKD 157

Length = 297

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 8/88 (9%)

Query: 192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN----PSDGNILSL 247
            +  + + +  NP N  +L NY  FL + +G + +A +   +AI       P+       
Sbjct: 84  AEDSFRRALTLNPNNGDVLNNYGTFLCQ-QGKYEQAMQQFEQAIEDPLYPQPARSL---E 139

Query: 248 YADLIWQAHKDASRAESYFDQAVKSAPD 275
            A L      D  +AE Y  +A++  P 
Sbjct: 140 NAGLCALKAGDFDKAEKYLTRALQIDPQ 167

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
PRK15359	144	type III secretion system chaperone protein SscB;	99.56
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.45
KOG0553	304	consensus TPR repeat-containing protein [General f	99.43
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.42
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.41
PRK11189	296	lipoprotein NlpI; Provisional	99.4
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.34
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.33
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.32
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.26
PRK12370	553	invasion protein regulator; Provisional	99.25
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.25
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.25
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.21
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.2
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.19
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.18
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.18
PRK15359	144	type III secretion system chaperone protein SscB;	99.17
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.15
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.15
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.15
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.13
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.13
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.12
PRK12370	553	invasion protein regulator; Provisional	99.12
KOG1126	638	consensus DNA-binding cell division cycle control	99.12
KOG1126	638	consensus DNA-binding cell division cycle control	99.11
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.1
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.1
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.08
KOG1125	579	consensus TPR repeat-containing protein [General f	99.07
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.04
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.03
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.02
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.0
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.98
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.98
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.97
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.97
PRK10803	263	tol-pal system protein YbgF; Provisional	98.96
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.96
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.94
PRK11189	296	lipoprotein NlpI; Provisional	98.94
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.94
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.94
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.93
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.91
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.91
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.91
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.9
PLN02789	320	farnesyltranstransferase	98.88
PF13371	73	TPR_9: Tetratricopeptide repeat	98.88
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.88
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.87
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.86
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.85
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.85
PLN02789	320	farnesyltranstransferase	98.82
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.81
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.8
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.79
PRK11906	458	transcriptional regulator; Provisional	98.79
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.79
PRK15331	165	chaperone protein SicA; Provisional	98.78
KOG2076	895	consensus RNA polymerase III transcription factor	98.78
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.76
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.76
PF13371	73	TPR_9: Tetratricopeptide repeat	98.76
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.75
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.74
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.74
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.69
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.67
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.64
PRK11906	458	transcriptional regulator; Provisional	98.64
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.63
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.62
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.6
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.59
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.59
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.55
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.55
PF12688	120	TPR_5: Tetratrico peptide repeat	98.54
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.54
KOG1125	579	consensus TPR repeat-containing protein [General f	98.53
PRK14574	822	hmsH outer membrane protein; Provisional	98.51
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.51
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.49
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.49
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.49
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.47
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.47
KOG0553	304	consensus TPR repeat-containing protein [General f	98.45
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.44
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.43
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.42
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.42
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.42
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.41
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.38
KOG4234	271	consensus TPR repeat-containing protein [General f	98.37
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.35
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.35
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.34
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.34
PRK14574	822	hmsH outer membrane protein; Provisional	98.34
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.33
KOG2003	840	consensus TPR repeat-containing protein [General f	98.32
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.32
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.31
KOG2076	895	consensus RNA polymerase III transcription factor	98.25
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.25
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.24
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.22
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.2
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.19
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.18
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.18
PF13512	142	TPR_18: Tetratricopeptide repeat	98.16
PF13428	44	TPR_14: Tetratricopeptide repeat	98.15
PF13431	34	TPR_17: Tetratricopeptide repeat	98.15
PF13431	34	TPR_17: Tetratricopeptide repeat	98.15
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.14
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.12
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.11
KOG4555	175	consensus TPR repeat-containing protein [Function	98.11
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.09
KOG1129	478	consensus TPR repeat-containing protein [General f	98.08
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.08
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.08
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.05
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.02
PRK10803	263	tol-pal system protein YbgF; Provisional	97.99
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.99
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.98
PRK15331	165	chaperone protein SicA; Provisional	97.97
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.95
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.93
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.93
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.92
PF12688	120	TPR_5: Tetratrico peptide repeat	97.91
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.91
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.9
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.88
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.88
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.85
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.84
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.83
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.83
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.8
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.8
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.78
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.76
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.74
KOG1129	478	consensus TPR repeat-containing protein [General f	97.69
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.68
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.68
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.65
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.65
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.59
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.59
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.56
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.55
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.52
PF13428	44	TPR_14: Tetratricopeptide repeat	97.51
KOG2003	840	consensus TPR repeat-containing protein [General f	97.49
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.46
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.42
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.42
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.41
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.37
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.35
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.35
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.34
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.34
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.29
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.29
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.26
PF13512	142	TPR_18: Tetratricopeptide repeat	97.23
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.17
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.16
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.11
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.1
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.97
KOG4648	536	consensus Uncharacterized conserved protein, conta	96.94
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.91
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.88
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.88
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.87
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.86
KOG4555	175	consensus TPR repeat-containing protein [Function	96.83
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.83
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.82
PLN03077	857	Protein ECB2; Provisional	96.81
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.79
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.79
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.76
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.75
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.71
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.7
PRK04841	903	transcriptional regulator MalT; Provisional	96.67
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.62
KOG1310	758	consensus WD40 repeat protein [General function pr	96.57
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.54
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.53
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.48
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.48
PRK10941	269	hypothetical protein; Provisional	96.45
PLN03218	1060	maturation of RBCL 1; Provisional	96.44
PLN03218	1060	maturation of RBCL 1; Provisional	96.44
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.41
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.37
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.36
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.34
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.32
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.31
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.3
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.28
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.27
KOG4234	271	consensus TPR repeat-containing protein [General f	96.24
PRK04841	903	transcriptional regulator MalT; Provisional	96.23
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.21
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.19
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.16
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.12
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.12
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.11
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.08
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.07
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.99
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.94
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.94
KOG2376	652	consensus Signal recognition particle, subunit Srp	95.93
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.91
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.9
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.89
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.88
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.82
PLN03077	857	Protein ECB2; Provisional	95.81
PRK10941	269	hypothetical protein; Provisional	95.8
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.8
KOG1586	288	consensus Protein required for fusion of vesicles	95.79
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.63
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.61
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.56
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.54
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.48
KOG3364	149	consensus Membrane protein involved in organellar	95.45
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.42
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.39
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.31
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.27
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.26
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.22
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.18
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	95.14
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.13
KOG1585	308	consensus Protein required for fusion of vesicles	95.04
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.95
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.94
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	94.88
KOG1586	288	consensus Protein required for fusion of vesicles	94.85
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.78
KOG2796	366	consensus Uncharacterized conserved protein [Funct	94.78
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	94.56
KOG2047	835	consensus mRNA splicing factor [RNA processing and	94.36
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.19
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.18
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.16
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.07
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	93.99
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	93.92
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.84
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	93.23
KOG4507	886	consensus Uncharacterized conserved protein, conta	93.15
KOG0529	421	consensus Protein geranylgeranyltransferase type I	93.03
KOG2471	696	consensus TPR repeat-containing protein [General f	93.0
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	92.98
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	92.92
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.75
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	92.66
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.57
COG3898	531	Uncharacterized membrane-bound protein [Function u	92.53
COG2912	269	Uncharacterized conserved protein [Function unknow	92.41
KOG2300	629	consensus Uncharacterized conserved protein [Funct	92.4
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.28
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	92.1
KOG1258	577	consensus mRNA processing protein [RNA processing	92.0
KOG2422	665	consensus Uncharacterized conserved protein [Funct	91.78
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.69
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	91.58
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	91.36
COG5191	435	Uncharacterized conserved protein, contains HAT (H	91.15
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.95
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.71
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.48
KOG3364	149	consensus Membrane protein involved in organellar	90.44
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	90.4
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.38
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	90.37
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	90.36
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	90.24
KOG2047	835	consensus mRNA splicing factor [RNA processing and	90.24
KOG2471	696	consensus TPR repeat-containing protein [General f	90.03
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	89.91
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	89.81
KOG4814	872	consensus Uncharacterized conserved protein [Funct	89.3
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	89.14
COG2912	269	Uncharacterized conserved protein [Function unknow	88.89
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	88.82
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	88.65
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	88.4
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	88.26
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	88.03
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	87.99
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	87.85
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	87.33
KOG2300	629	consensus Uncharacterized conserved protein [Funct	87.29
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	87.1
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	86.93
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	86.78
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	86.47
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	86.4
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	86.06
COG3629	280	DnrI DNA-binding transcriptional activator of the	86.06
KOG1258	577	consensus mRNA processing protein [RNA processing	85.61
PLN03138	796	Protein TOC75; Provisional	85.49
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	85.37
COG3898	531	Uncharacterized membrane-bound protein [Function u	85.27
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	85.25
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	84.86
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	83.59
COG3118	304	Thioredoxin domain-containing protein [Posttransla	83.31
COG3947	361	Response regulator containing CheY-like receiver a	83.15
PLN03138	796	Protein TOC75; Provisional	82.77
KOG0529	421	consensus Protein geranylgeranyltransferase type I	81.78
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	80.69
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	80.1

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.56  E-value=4.2e-14  Score=118.47  Aligned_cols=95  Identities=15%  Similarity=0.070  Sum_probs=90.5

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ...+...|++++|+.+|++++.++|.++.+|+++|.++. ..|++++|+.+|++|++++|+++.+++++|.++.. .|++
T Consensus        31 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g~~  108 (144)
T PRK15359         31 GYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MGEP  108 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCH
Confidence            455667799999999999999999999999999999997 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+..|++|++++|++
T Consensus       109 ~eAi~~~~~Al~~~p~~  125 (144)
T PRK15359        109 GLAREAFQTAIKMSYAD  125 (144)
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            99999999999999987

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.45  E-value=1.3e-12  Score=105.24  Aligned_cols=96  Identities=11%  Similarity=0.072  Sum_probs=90.3

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      +...+...+++++|+..|+++++++|.++.++.++|.++. ..+++++|+.+|+++++++|+++.+++.+|.+++. .|+
T Consensus        23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~  100 (135)
T TIGR02552        23 LAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA-LGE  100 (135)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-cCC
Confidence            3355666799999999999999999999999999999997 78999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 023753          259 ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       259 ~deAi~~yekALeldPdD  276 (277)
                      +++|+.+|+++++++|++
T Consensus       101 ~~~A~~~~~~al~~~p~~  118 (135)
T TIGR02552       101 PESALKALDLAIEICGEN  118 (135)
T ss_pred             HHHHHHHHHHHHHhcccc
Confidence            999999999999999986

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.43  E-value=5e-13  Score=124.80  Aligned_cols=90  Identities=20%  Similarity=0.257  Sum_probs=87.2

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 023753          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAES  264 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~  264 (277)
                      ..++|.+|+..|.+||+++|.|+.+|.|.|.+|. +.|.|+.|++.|+.||.+||....+|..||.+|+. +|++++|++
T Consensus        93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~gk~~~A~~  170 (304)
T KOG0553|consen   93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LGKYEEAIE  170 (304)
T ss_pred             HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cCcHHHHHH
Confidence            4589999999999999999999999999999997 89999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHHhCCCC
Q 023753          265 YFDQAVKSAPDD  276 (277)
Q Consensus       265 ~yekALeldPdD  276 (277)
                      .|++||+++|+|
T Consensus       171 aykKaLeldP~N  182 (304)
T KOG0553|consen  171 AYKKALELDPDN  182 (304)
T ss_pred             HHHhhhccCCCc
Confidence            999999999987

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.42  E-value=2.9e-12  Score=113.07  Aligned_cols=96  Identities=16%  Similarity=0.183  Sum_probs=87.7

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD--FAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd--~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G  257 (277)
                      +.++...+++++|+.+|++|++++|+++.++.++|.+++...|+  +++|++.+++|++++|+++.+++++|.++++ .|
T Consensus        80 g~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g  158 (198)
T PRK10370         80 GEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QA  158 (198)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cC
Confidence            35677789999999999999999999999999999976436676  5999999999999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 023753          258 DASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       258 d~deAi~~yekALeldPdD  276 (277)
                      ++++|+.+|+++++++|.+
T Consensus       159 ~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        159 DYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             CHHHHHHHHHHHHhhCCCC
Confidence            9999999999999999875

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.41  E-value=2.8e-12  Score=122.48  Aligned_cols=94  Identities=19%  Similarity=0.208  Sum_probs=89.0

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ..+...+++++|+.+|++||+++|+++.+++++|.+|. ..+++++|+.+|++|+.++|+++.+++.+|.+++. +|+|+
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg~~~   87 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LEEYQ   87 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hCCHH
Confidence            34445689999999999999999999999999999997 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.+|++|++++|++
T Consensus        88 eA~~~~~~al~l~P~~  103 (356)
T PLN03088         88 TAKAALEKGASLAPGD  103 (356)
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            9999999999999986

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.40  E-value=4.1e-12  Score=117.86  Aligned_cols=94  Identities=12%  Similarity=0.081  Sum_probs=89.6

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      .++...|++++|+..|++|++++|+++.+|+++|.++. ..+++++|++.|++|++++|++..++.++|.+++. .|+++
T Consensus        72 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~  149 (296)
T PRK11189         72 VLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GGRYE  149 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHH
Confidence            45667799999999999999999999999999999887 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|++.|+++++++|++
T Consensus       150 eA~~~~~~al~~~P~~  165 (296)
T PRK11189        150 LAQDDLLAFYQDDPND  165 (296)
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            9999999999999987

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.34  E-value=1.3e-11  Score=106.35  Aligned_cols=98  Identities=7%  Similarity=-0.060  Sum_probs=88.9

Q ss_pred             cchhhHH--HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753          174 GFSGSNN--NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (277)
Q Consensus       174 ~~~~yY~--~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l  251 (277)
                      ..+..|.  -.+...|++++|+..|+-+..+||.++..|++||.++. .+|+|++|+.+|.+|+.++|+||.++.++|.|
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c  112 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC  112 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence            3444454  33345699999999999999999999999999999997 89999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC
Q 023753          252 IWQAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       252 l~~~~Gd~deAi~~yekALeld  273 (277)
                      ++. .|+.+.|++.|+.||...
T Consensus       113 ~L~-lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        113 YLA-CDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHH-cCCHHHHHHHHHHHHHHh
Confidence            999 999999999999999875

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.33  E-value=8e-12  Score=90.52  Aligned_cols=68  Identities=24%  Similarity=0.243  Sum_probs=64.8

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 023753          205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK-DASRAESYFDQAVKSAP  274 (277)
Q Consensus       205 ~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G-d~deAi~~yekALeldP  274 (277)
                      +++.+|.++|.++. ..+++++|+.+|++||+++|+++.+++++|.+++. ++ ++++|+.+|++|++++|
T Consensus         1 e~a~~~~~~g~~~~-~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYF-QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence            46889999999997 89999999999999999999999999999999999 98 79999999999999998

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.32  E-value=2.9e-11  Score=85.55  Aligned_cols=93  Identities=20%  Similarity=0.226  Sum_probs=86.6

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ..+...+++++|+.+|+++++..|.+..++..+|.++. ..+++++|+.+|++++.+.|.+..++..+|.++.. .++++
T Consensus         8 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   85 (100)
T cd00189           8 NLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-LGKYE   85 (100)
T ss_pred             HHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-HHhHH
Confidence            44556799999999999999999999999999999987 78999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCC
Q 023753          261 RAESYFDQAVKSAPD  275 (277)
Q Consensus       261 eAi~~yekALeldPd  275 (277)
                      +|..+++++++.+|+
T Consensus        86 ~a~~~~~~~~~~~~~  100 (100)
T cd00189          86 EALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHccCCC
Confidence            999999999999884

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.26  E-value=1.5e-10  Score=89.87  Aligned_cols=94  Identities=12%  Similarity=0.106  Sum_probs=85.7

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQ  254 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~  254 (277)
                      ..+...+++++|+.+|+++++.+|++   +.+++.+|.++. ..+++++|+.+|++++..+|++   +.++..+|.++..
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~   88 (119)
T TIGR02795        10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE   88 (119)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH
Confidence            34556799999999999999999987   578999999997 8999999999999999999885   6789999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC
Q 023753          255 AHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       255 ~~Gd~deAi~~yekALeldPdD  276 (277)
                       .+++++|+.+|+++++..|++
T Consensus        89 -~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        89 -LGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             -hCChHHHHHHHHHHHHHCcCC
Confidence             999999999999999999986

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK12370 invasion protein regulator; Provisional

Probab=99.25  E-value=3.8e-11  Score=120.31  Aligned_cols=87  Identities=16%  Similarity=0.166  Sum_probs=82.7

Q ss_pred             CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023753          188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFD  267 (277)
Q Consensus       188 d~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~ye  267 (277)
                      ++++|+.++++|++++|+++.++..+|.++. ..+++++|+.+|++|++++|+++.+++.+|.++.. .|++++|+.+|+
T Consensus       319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~~~~  396 (553)
T PRK12370        319 AMIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQTIN  396 (553)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence            3678999999999999999999999999886 78999999999999999999999999999999999 999999999999


Q ss_pred             HHHHhCCCC
Q 023753          268 QAVKSAPDD  276 (277)
Q Consensus       268 kALeldPdD  276 (277)
                      +|++++|.+
T Consensus       397 ~Al~l~P~~  405 (553)
T PRK12370        397 ECLKLDPTR  405 (553)
T ss_pred             HHHhcCCCC
Confidence            999999986

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.25  E-value=6e-11  Score=104.71  Aligned_cols=90  Identities=13%  Similarity=0.212  Sum_probs=82.9

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHH
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD--ASRAE  263 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd--~deAi  263 (277)
                      .++.++++..|+++++.+|+|+.+|..+|.++. ..+++++|+.+|++|++++|+++.++..+|.+++...|+  +++|+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            466789999999999999999999999999886 899999999999999999999999999999986432677  59999


Q ss_pred             HHHHHHHHhCCCC
Q 023753          264 SYFDQAVKSAPDD  276 (277)
Q Consensus       264 ~~yekALeldPdD  276 (277)
                      ..|+++++++|++
T Consensus       131 ~~l~~al~~dP~~  143 (198)
T PRK10370        131 EMIDKALALDANE  143 (198)
T ss_pred             HHHHHHHHhCCCC
Confidence            9999999999987

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.25  E-value=3.8e-11  Score=109.14  Aligned_cols=88  Identities=19%  Similarity=0.285  Sum_probs=77.4

Q ss_pred             HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 023753          183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA  262 (277)
Q Consensus       183 ~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deA  262 (277)
                      |...|++..|.+.+++||+.||++..+|..+|.+|. ..|+.+.|.+.|++|+.++|++.++++|+|.+++. +|++++|
T Consensus        45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq-~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~eA  122 (250)
T COG3063          45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQ-KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEA  122 (250)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHHH
Confidence            445789999999999999999999999999998775 88999999999999999999999999999999988 8888888


Q ss_pred             HHHHHHHHHh
Q 023753          263 ESYFDQAVKS  272 (277)
Q Consensus       263 i~~yekALel  272 (277)
                      ..+|++|++.
T Consensus       123 ~q~F~~Al~~  132 (250)
T COG3063         123 MQQFERALAD  132 (250)
T ss_pred             HHHHHHHHhC
Confidence            8888888763

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.21  E-value=6.6e-11  Score=107.58  Aligned_cols=93  Identities=24%  Similarity=0.351  Sum_probs=86.2

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcC
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYADLIWQAHK  257 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~---n~~al~~LA~ll~~~~G  257 (277)
                      .+|...|+.+.|.+.|++|+.++|++..+++|||.+|. .+|++++|..+|++|+. +|.   -+..+.|+|.|.++ +|
T Consensus        77 ~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~-~g  153 (250)
T COG3063          77 HYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC-AQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALK-AG  153 (250)
T ss_pred             HHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhh-cC
Confidence            55667899999999999999999999999999999999 78999999999999998 454   56789999999999 99


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 023753          258 DASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       258 d~deAi~~yekALeldPdD  276 (277)
                      +++.|.++|+++|+++|++
T Consensus       154 q~~~A~~~l~raL~~dp~~  172 (250)
T COG3063         154 QFDQAEEYLKRALELDPQF  172 (250)
T ss_pred             CchhHHHHHHHHHHhCcCC
Confidence            9999999999999999986

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.20  E-value=1.6e-10  Score=116.54  Aligned_cols=94  Identities=22%  Similarity=0.173  Sum_probs=82.2

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      .++...|++++|+.+|+++++++|+++.++.++|.++. ..+++++|+.+|++|++++|+++.+++.+|.+++. .|+++
T Consensus       339 ~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~  416 (615)
T TIGR00990       339 TFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNL-ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-KGEFA  416 (615)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence            44556788999999999999999999989999998886 78899999999999999999999999999998888 89999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.+|+++++++|++
T Consensus       417 ~A~~~~~kal~l~P~~  432 (615)
T TIGR00990       417 QAGKDYQKSIDLDPDF  432 (615)
T ss_pred             HHHHHHHHHHHcCccC
Confidence            9999999999998875

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.19  E-value=6e-11  Score=119.77  Aligned_cols=95  Identities=22%  Similarity=0.203  Sum_probs=68.5

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      .-+|..+|++++|+.+|+.||.++|..+.++.|+|..|. .+|+...|+++|.+||.++|..++++.+||.+|-+ .|+.
T Consensus       395 a~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~k-e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD-sGni  472 (966)
T KOG4626|consen  395 ASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYK-EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD-SGNI  472 (966)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHH-HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc-cCCc
Confidence            345555677777777777777777777777777777776 56777777777777777777777777777777776 7777


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      .+|+..|+.||++.|+.
T Consensus       473 ~~AI~sY~~aLklkPDf  489 (966)
T KOG4626|consen  473 PEAIQSYRTALKLKPDF  489 (966)
T ss_pred             HHHHHHHHHHHccCCCC
Confidence            77777777777777764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.18  E-value=2.5e-10  Score=115.20  Aligned_cols=95  Identities=13%  Similarity=0.157  Sum_probs=83.7

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ..++...+++++|+.+|+++++++|+++.+++++|.++. ..|++++|+.+|++|++++|++..++..+|.+++. +|++
T Consensus       372 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~  449 (615)
T TIGR00990       372 ASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK-EGSI  449 (615)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH-CCCH
Confidence            345556788999999999999999999999999999887 78999999999999999999999999999998888 8999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+.+|+++++..|++
T Consensus       450 ~eA~~~~~~al~~~P~~  466 (615)
T TIGR00990       450 ASSMATFRRCKKNFPEA  466 (615)
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            99999999999988875

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.18  E-value=2.2e-10  Score=122.45  Aligned_cols=94  Identities=17%  Similarity=0.210  Sum_probs=80.5

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      .++...|++++|+.+|+++++++|+++.+++++|.++. ..|++++|+++|++|++++|+++.+++++|.++.. .|+++
T Consensus       617 ~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~-~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~-lGd~~  694 (987)
T PRK09782        617 TIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALW-DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR-LDDMA  694 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHH
Confidence            45556788888888888888888888888888888886 68888888888888888888888888888888888 88888


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.+|++|++++|++
T Consensus       695 eA~~~l~~Al~l~P~~  710 (987)
T PRK09782        695 ATQHYARLVIDDIDNQ  710 (987)
T ss_pred             HHHHHHHHHHhcCCCC
Confidence            8888888888888875

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.17  E-value=1.1e-10  Score=97.81  Aligned_cols=82  Identities=12%  Similarity=0.136  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023753          190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA  269 (277)
Q Consensus       190 deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekA  269 (277)
                      .--+.+|+++++++|++   ++++|.++. ..|++++|+.+|++++.++|.++.++..+|.++.. .|++++|+.+|++|
T Consensus        10 ~~~~~~~~~al~~~p~~---~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~A   84 (144)
T PRK15359         10 KIPEDILKQLLSVDPET---VYASGYASW-QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHA   84 (144)
T ss_pred             CCHHHHHHHHHHcCHHH---HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence            34568999999999986   556788887 79999999999999999999999999999999999 99999999999999


Q ss_pred             HHhCCCC
Q 023753          270 VKSAPDD  276 (277)
Q Consensus       270 LeldPdD  276 (277)
                      ++++|++
T Consensus        85 l~l~p~~   91 (144)
T PRK15359         85 LMLDASH   91 (144)
T ss_pred             HhcCCCC
Confidence            9999987

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.15  E-value=8.1e-10  Score=92.66  Aligned_cols=91  Identities=23%  Similarity=0.352  Sum_probs=83.8

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ..+...+++++|+..|+++++.+|++..++..+|.++. ..+++++|+++|+++++.+|.++.++.++|.++.. .|+++
T Consensus        39 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~g~~~  116 (234)
T TIGR02521        39 LGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QGKYE  116 (234)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cccHH
Confidence            56667899999999999999999999999999999887 79999999999999999999999999999999988 99999


Q ss_pred             HHHHHHHHHHHhC
Q 023753          261 RAESYFDQAVKSA  273 (277)
Q Consensus       261 eAi~~yekALeld  273 (277)
                      +|+.+|++++...
T Consensus       117 ~A~~~~~~~~~~~  129 (234)
T TIGR02521       117 QAMQQFEQAIEDP  129 (234)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999998753

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.15  E-value=9.6e-11  Score=88.69  Aligned_cols=81  Identities=26%  Similarity=0.361  Sum_probs=73.3

Q ss_pred             CCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 023753          186 NHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE  263 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~--n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi  263 (277)
                      ++++++|+.+|+++++.+|.  +..+++.+|.+++ ..++|++|+.++++ ++.+|.++..++.+|.+++. ++++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~-~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYF-QQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-LGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH-HTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-HCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-hCCHHHHH
Confidence            47899999999999999995  5677888999998 89999999999999 88999999999999999999 99999999


Q ss_pred             HHHHHH
Q 023753          264 SYFDQA  269 (277)
Q Consensus       264 ~~yekA  269 (277)
                      .+|++|
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            999986

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.15  E-value=1.4e-10  Score=117.10  Aligned_cols=94  Identities=17%  Similarity=0.226  Sum_probs=67.9

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ..++...|+..+|+.+|.+||.+.|+++.+++|||.++. .++.+++|...|++|++..|..+.++.+||.+|-+ +|++
T Consensus       327 anALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~-E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq-qgnl  404 (966)
T KOG4626|consen  327 ANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR-EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ-QGNL  404 (966)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh-cccH
Confidence            344455577777777777777777777777777777776 46777777777777777777777777777777766 7777


Q ss_pred             HHHHHHHHHHHHhCCC
Q 023753          260 SRAESYFDQAVKSAPD  275 (277)
Q Consensus       260 deAi~~yekALeldPd  275 (277)
                      ++|+.+|+.||++.|.
T Consensus       405 ~~Ai~~YkealrI~P~  420 (966)
T KOG4626|consen  405 DDAIMCYKEALRIKPT  420 (966)
T ss_pred             HHHHHHHHHHHhcCch
Confidence            7777777777777764

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.13  E-value=1.9e-10  Score=82.59  Aligned_cols=63  Identities=24%  Similarity=0.444  Sum_probs=53.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          212 NYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       212 nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      .+|..++ ..|++++|+.+|+++++.+|+++.+++.+|.+++. +|++++|+.+|+++++++|++
T Consensus         2 ~~a~~~~-~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALY-QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHH-HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCC
Confidence            5677776 78899999999999999999999999999999988 899999999999999999886

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.13  E-value=3.7e-10  Score=90.91  Aligned_cols=82  Identities=17%  Similarity=0.093  Sum_probs=77.9

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753          194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       194 ~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeld  273 (277)
                      +.|+++++++|++..+.+.+|.++. ..+++++|+.+|++++.++|.++.++..+|.++.. .+++++|+.+|+++++++
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence            4789999999999999999999887 79999999999999999999999999999999999 999999999999999999


Q ss_pred             CCCC
Q 023753          274 PDDW  277 (277)
Q Consensus       274 PdD~  277 (277)
                      |+++
T Consensus        82 p~~~   85 (135)
T TIGR02552        82 PDDP   85 (135)
T ss_pred             CCCh
Confidence            9864

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.12  E-value=9.2e-10  Score=93.88  Aligned_cols=94  Identities=20%  Similarity=0.296  Sum_probs=84.2

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G  257 (277)
                      ..+...+++++|+.+|+++++++|+.   +.++.++|.++. ..|++++|+.+|++|+.++|+++.++..+|.++.. .+
T Consensus        43 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g  120 (172)
T PRK02603         43 MSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHK-RG  120 (172)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cC
Confidence            44556799999999999999988764   578999999887 89999999999999999999999999999999988 77


Q ss_pred             C--------------HHHHHHHHHHHHHhCCCC
Q 023753          258 D--------------ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       258 d--------------~deAi~~yekALeldPdD  276 (277)
                      +              +++|++++++++.++|++
T Consensus       121 ~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        121 EKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             ChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            7              688999999999999985

>PRK12370 invasion protein regulator; Provisional

Probab=99.12  E-value=6.6e-10  Score=111.48  Aligned_cols=95  Identities=12%  Similarity=0.044  Sum_probs=85.4

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ..++...+++++|+.+|++|++++|+++.+++++|.++. ..|++++|+.+|++|++++|.++.+++.++.+++. .+++
T Consensus       345 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-~g~~  422 (553)
T PRK12370        345 GLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPTRAAAGITKLWITYY-HTGI  422 (553)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-ccCH
Confidence            345667799999999999999999999999999999987 89999999999999999999999887777777877 8999


Q ss_pred             HHHHHHHHHHHHhC-CCC
Q 023753          260 SRAESYFDQAVKSA-PDD  276 (277)
Q Consensus       260 deAi~~yekALeld-PdD  276 (277)
                      ++|+.+++++++.+ |++
T Consensus       423 eeA~~~~~~~l~~~~p~~  440 (553)
T PRK12370        423 DDAIRLGDELRSQHLQDN  440 (553)
T ss_pred             HHHHHHHHHHHHhccccC
Confidence            99999999999876 443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.12  E-value=3.6e-11  Score=121.40  Aligned_cols=87  Identities=17%  Similarity=0.180  Sum_probs=44.6

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF  266 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~y  266 (277)
                      ++++.|+++|+|||++||+++.+|..+|.=+. ...++++|..+|++||.++|++..||+-+|.+|.+ +++++.|+-+|
T Consensus       435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-qek~e~Ae~~f  512 (638)
T KOG1126|consen  435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-QEKLEFAEFHF  512 (638)
T ss_pred             hHHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-cchhhHHHHHH
Confidence            34455555555555555555555555444332 34445555555555555555555555555555555 55555555555


Q ss_pred             HHHHHhCCC
Q 023753          267 DQAVKSAPD  275 (277)
Q Consensus       267 ekALeldPd  275 (277)
                      ++|+++||.
T Consensus       513 qkA~~INP~  521 (638)
T KOG1126|consen  513 QKAVEINPS  521 (638)
T ss_pred             HhhhcCCcc
Confidence            555555554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.11  E-value=1e-10  Score=118.20  Aligned_cols=90  Identities=17%  Similarity=0.174  Sum_probs=85.8

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY  265 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~  265 (277)
                      +.++|+|..+|++||..+|.+..||+.+|.+|. ++++++.|+-+|++|+++||.+...+..+|.++.+ .|+.++|+.+
T Consensus       468 ~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~~d~AL~~  545 (638)
T KOG1126|consen  468 TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKRKDKALQL  545 (638)
T ss_pred             hHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhhhhHHHHH
Confidence            457889999999999999999999999999997 89999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHhCCCCC
Q 023753          266 FDQAVKSAPDDW  277 (277)
Q Consensus       266 yekALeldPdD~  277 (277)
                      |++|+.++|.|.
T Consensus       546 ~~~A~~ld~kn~  557 (638)
T KOG1126|consen  546 YEKAIHLDPKNP  557 (638)
T ss_pred             HHHHHhcCCCCc
Confidence            999999999874

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.10  E-value=1.8e-10  Score=104.73  Aligned_cols=99  Identities=23%  Similarity=0.249  Sum_probs=85.3

Q ss_pred             hhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 023753          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (277)
Q Consensus       177 ~yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~  256 (277)
                      ..+..++...|+.++|+.+|++|++++|+|+.++..+++++. ..+++++|.+.+++..+..|.++.++..+|.++.. .
T Consensus       150 ~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-l  227 (280)
T PF13429_consen  150 LALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ-L  227 (280)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH-H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc-c
Confidence            345577788899999999999999999999999999999886 78999999999999998889999999999999999 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCCC
Q 023753          257 KDASRAESYFDQAVKSAPDDW  277 (277)
Q Consensus       257 Gd~deAi~~yekALeldPdD~  277 (277)
                      |++++|+.+|+++++.+|+|+
T Consensus       228 g~~~~Al~~~~~~~~~~p~d~  248 (280)
T PF13429_consen  228 GRYEEALEYLEKALKLNPDDP  248 (280)
T ss_dssp             T-HHHHHHHHHHHHHHSTT-H
T ss_pred             ccccccccccccccccccccc
Confidence            999999999999999999874

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.10  E-value=1.9e-09  Score=90.40  Aligned_cols=94  Identities=22%  Similarity=0.339  Sum_probs=64.9

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCC
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld--P~n~~al~~LA~ll~~~~Gd  258 (277)
                      .++...+++++|+.+|+++++.+|.+..++.+++.++. ..+++++|+.+|++++...  |....++..+|.+++. .++
T Consensus        73 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~  150 (234)
T TIGR02521        73 LYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK-AGD  150 (234)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-cCC
Confidence            45555677777777777777777777777777777665 6677777777777776643  3445566666766666 677


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 023753          259 ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       259 ~deAi~~yekALeldPdD  276 (277)
                      +++|+.+|+++++.+|++
T Consensus       151 ~~~A~~~~~~~~~~~~~~  168 (234)
T TIGR02521       151 FDKAEKYLTRALQIDPQR  168 (234)
T ss_pred             HHHHHHHHHHHHHhCcCC
Confidence            777777777777766654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.08  E-value=2.1e-09  Score=91.04  Aligned_cols=94  Identities=20%  Similarity=0.218  Sum_probs=80.8

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW----  253 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~----  253 (277)
                      ..+...+++++|+.+|++|+.+.|+.   +.++.++|.++. ..+++++|+.+|++|+.++|.+...+.++|.++.    
T Consensus        43 ~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~  121 (168)
T CHL00033         43 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGE  121 (168)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhH
Confidence            44556799999999999999997763   468999999887 8999999999999999999999999999999998    


Q ss_pred             ---HHcCCHH-------HHHHHHHHHHHhCCCC
Q 023753          254 ---QAHKDAS-------RAESYFDQAVKSAPDD  276 (277)
Q Consensus       254 ---~~~Gd~d-------eAi~~yekALeldPdD  276 (277)
                         . .|+++       +|+.+|++++..+|++
T Consensus       122 ~~~~-~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033        122 QAIE-QGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HHHH-cccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence               5 66765       6777777888888864

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.07  E-value=2.2e-10  Score=114.39  Aligned_cols=93  Identities=13%  Similarity=0.033  Sum_probs=86.9

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      -+|...++|++|+.+|+.||+.+|+|...|+.||..|. ...+.++|+..|+||+++.|.+..+.+++|..+++ +|.|+
T Consensus       438 VLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA-N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN-lG~yk  515 (579)
T KOG1125|consen  438 VLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA-NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN-LGAYK  515 (579)
T ss_pred             HHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc-CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh-hhhHH
Confidence            44555688999999999999999999999999999997 77899999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCC
Q 023753          261 RAESYFDQAVKSAPD  275 (277)
Q Consensus       261 eAi~~yekALeldPd  275 (277)
                      +|+++|-.||.+.+.
T Consensus       516 EA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  516 EAVKHLLEALSMQRK  530 (579)
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999999998765

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.04  E-value=2.8e-09  Score=109.32  Aligned_cols=96  Identities=18%  Similarity=0.149  Sum_probs=71.2

Q ss_pred             HHHHHHhCCCcHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753          179 NNNYSNNNHGSSS----TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (277)
Q Consensus       179 Y~~m~e~~Gd~de----Ai~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~  254 (277)
                      +..++...|++++    |+.+|+++++++|+++.++.++|.++. ..|++++|+.+|++|+.++|+++.++.++|.++..
T Consensus       252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~  330 (656)
T PRK15174        252 LGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI-RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ  330 (656)
T ss_pred             HHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3455556677664    677777777777777777777777775 67777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC
Q 023753          255 AHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       255 ~~Gd~deAi~~yekALeldPdD  276 (277)
                       .|++++|+..|+++++.+|++
T Consensus       331 -~G~~~eA~~~l~~al~~~P~~  351 (656)
T PRK15174        331 -VGQYTAASDEFVQLAREKGVT  351 (656)
T ss_pred             -CCCHHHHHHHHHHHHHhCccc
Confidence             777777777777777777764

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.03  E-value=2.3e-09  Score=111.01  Aligned_cols=94  Identities=13%  Similarity=0.066  Sum_probs=87.5

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      .+....|.+++|+..++++++++|++..++.+++.+|. +.+++++|+..+++++..+|+++.+++.+|.++.+ .|+++
T Consensus        94 ~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~-~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g~~~  171 (694)
T PRK15179         94 RALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVK-RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IGQSE  171 (694)
T ss_pred             HHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hcchH
Confidence            45556799999999999999999999999999999998 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.+|+++++.+|++
T Consensus       172 ~A~~~y~~~~~~~p~~  187 (694)
T PRK15179        172 QADACFERLSRQHPEF  187 (694)
T ss_pred             HHHHHHHHHHhcCCCc
Confidence            9999999999988874

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.02  E-value=2.4e-09  Score=114.55  Aligned_cols=88  Identities=17%  Similarity=0.223  Sum_probs=84.7

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY  265 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~  265 (277)
                      .|++++|+.+|++|++++|+ +.++.++|.++. ..|++++|+.+|++|+.++|+++.++.++|.++.. .|++++|+.+
T Consensus       589 ~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~  665 (987)
T PRK09782        589 PGQPELALNDLTRSLNIAPS-ANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREM  665 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHH
Confidence            49999999999999999996 999999999987 89999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHhCCCC
Q 023753          266 FDQAVKSAPDD  276 (277)
Q Consensus       266 yekALeldPdD  276 (277)
                      |++|++++|++
T Consensus       666 l~~AL~l~P~~  676 (987)
T PRK09782        666 LERAHKGLPDD  676 (987)
T ss_pred             HHHHHHhCCCC
Confidence            99999999986

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.00  E-value=4e-09  Score=108.19  Aligned_cols=98  Identities=14%  Similarity=0.146  Sum_probs=90.9

Q ss_pred             hhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 023753          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (277)
Q Consensus       177 ~yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~  256 (277)
                      ..+..++...|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|++++..+|+++.++..+|.++.. .
T Consensus       288 ~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~-~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~-~  365 (656)
T PRK15174        288 TLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALR-QVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQ-A  365 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-C
Confidence            355677778899999999999999999999999999999997 89999999999999999999999888888998988 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCC
Q 023753          257 KDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       257 Gd~deAi~~yekALeldPdD  276 (277)
                      |++++|+.+|+++++++|++
T Consensus       366 G~~deA~~~l~~al~~~P~~  385 (656)
T PRK15174        366 GKTSEAESVFEHYIQARASH  385 (656)
T ss_pred             CCHHHHHHHHHHHHHhChhh
Confidence            99999999999999999986

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.98  E-value=1.5e-09  Score=77.92  Aligned_cols=61  Identities=18%  Similarity=0.229  Sum_probs=55.6

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG  242 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~  242 (277)
                      ..+...|++++|+.+|+++++.+|+++.+++.+|.++. ..|++++|+.+|+++++++|++|
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence            45667899999999999999999999999999999997 89999999999999999999986

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.98  E-value=5.2e-09  Score=96.36  Aligned_cols=96  Identities=17%  Similarity=0.115  Sum_probs=90.8

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      |.+....+|++..|+..+++|.+++|+|+.+|..+|.+|. +.|+++.|...|.+|+++.|+++.++.|+|..|+. .||
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~gd  183 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RGD  183 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cCC
Confidence            7788888999999999999999999999999999999996 89999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 023753          259 ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       259 ~deAi~~yekALeldPdD  276 (277)
                      ++.|+.++..+...-+.|
T Consensus       184 ~~~A~~lll~a~l~~~ad  201 (257)
T COG5010         184 LEDAETLLLPAYLSPAAD  201 (257)
T ss_pred             HHHHHHHHHHHHhCCCCc
Confidence            999999999998776644

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.97  E-value=6.2e-09  Score=103.88  Aligned_cols=93  Identities=24%  Similarity=0.292  Sum_probs=76.5

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      .++...|++++|+.+|+++++.+|+++.++.+++.++. ..++ .+|+.++++++.+.|+++.++..+|.+++. .|+++
T Consensus       778 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~  854 (899)
T TIGR02917       778 ELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL-ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE-KGEAD  854 (899)
T ss_pred             HHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHH
Confidence            45556788888888888888888888888888888776 6677 778888888888888888888888888888 88888


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.+|+++++++|.+
T Consensus       855 ~A~~~~~~a~~~~~~~  870 (899)
T TIGR02917       855 RALPLLRKAVNIAPEA  870 (899)
T ss_pred             HHHHHHHHHHhhCCCC
Confidence            8888888888888865

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=7.6e-09  Score=96.84  Aligned_cols=98  Identities=21%  Similarity=0.154  Sum_probs=89.8

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~G--d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~  255 (277)
                      ..+.+|...+++..|...|++|+++.|+|+.++..||.+++...+  .-.+|...|++|++.||+|..+++.||..+++ 
T Consensus       161 ~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe-  239 (287)
T COG4235         161 LLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE-  239 (287)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-
Confidence            456788889999999999999999999999999999998874444  46799999999999999999999999999999 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 023753          256 HKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       256 ~Gd~deAi~~yekALeldPdD  276 (277)
                      +++|++|+..++..+...|.+
T Consensus       240 ~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         240 QGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             cccHHHHHHHHHHHHhcCCCC
Confidence            999999999999999998876

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.96  E-value=1e-08  Score=94.83  Aligned_cols=91  Identities=10%  Similarity=0.172  Sum_probs=84.2

Q ss_pred             HhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcC
Q 023753          184 NNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYADLIWQAHK  257 (277)
Q Consensus       184 e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~---n~~al~~LA~ll~~~~G  257 (277)
                      ...+++++|+..|++.++..|++   +.+++.+|.+|+ ..+++++|+.+|+++++..|+   .+++++.+|.++.. .+
T Consensus       154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g  231 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KG  231 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cC
Confidence            44689999999999999999998   579999999998 899999999999999998887   57889999999998 99


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 023753          258 DASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       258 d~deAi~~yekALeldPdD  276 (277)
                      ++++|+.+|+++++..|+.
T Consensus       232 ~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        232 DTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             CHHHHHHHHHHHHHHCcCC
Confidence            9999999999999999975

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.96  E-value=1.9e-09  Score=77.95  Aligned_cols=60  Identities=25%  Similarity=0.256  Sum_probs=55.3

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANP  239 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~G-d~eeA~e~~ekALeldP  239 (277)
                      .+..+...+++++|+.+|++||+++|+++.+++++|.++. ..+ ++++|+++|++|++++|
T Consensus         9 ~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    9 LGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence            3456667899999999999999999999999999999997 788 79999999999999998

...

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.94  E-value=7.7e-09  Score=91.03  Aligned_cols=99  Identities=16%  Similarity=0.162  Sum_probs=86.5

Q ss_pred             hhhHH--HHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 023753          176 SGSNN--NYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---ILSL  247 (277)
Q Consensus       176 ~~yY~--~m~e~~Gd~deAi~~yekALeldP~n~---~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~---al~~  247 (277)
                      ..+|.  ..+...+++++|+..|++++..+|+++   .+++.+|.++. ..+++++|+..|+++++..|+++.   +++.
T Consensus        34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~  112 (235)
T TIGR03302        34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYAYYL  112 (235)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence            34444  344567999999999999999999987   57899999887 899999999999999999998876   6888


Q ss_pred             HHHHHHHHc--------CCHHHHHHHHHHHHHhCCCC
Q 023753          248 YADLIWQAH--------KDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       248 LA~ll~~~~--------Gd~deAi~~yekALeldPdD  276 (277)
                      +|.+++. .        +++++|+..|++++..+|++
T Consensus       113 ~g~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  148 (235)
T TIGR03302       113 RGLSNYN-QIDRVDRDQTAAREAFEAFQELIRRYPNS  148 (235)
T ss_pred             HHHHHHH-hcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence            9999987 5        78999999999999999986

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.94  E-value=1.3e-08  Score=94.52  Aligned_cols=95  Identities=14%  Similarity=0.090  Sum_probs=78.9

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      .+.++...+++++|+..|++|++++|++..++.++|.+++ ..|++++|++.|+++++++|+++..... ..++.. .++
T Consensus       104 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~-~~~  180 (296)
T PRK11189        104 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY-YGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAES-KLD  180 (296)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHc-cCC
Confidence            3466677899999999999999999999999999999987 7999999999999999999999853322 223344 789


Q ss_pred             HHHHHHHHHHHHHh-CCCC
Q 023753          259 ASRAESYFDQAVKS-APDD  276 (277)
Q Consensus       259 ~deAi~~yekALel-dPdD  276 (277)
                      +++|+..|++++.. +|+.
T Consensus       181 ~~~A~~~l~~~~~~~~~~~  199 (296)
T PRK11189        181 PKQAKENLKQRYEKLDKEQ  199 (296)
T ss_pred             HHHHHHHHHHHHhhCCccc
Confidence            99999999887755 4443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=2.6e-09  Score=105.64  Aligned_cols=98  Identities=16%  Similarity=0.172  Sum_probs=76.2

Q ss_pred             hhhHH--HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023753          176 SGSNN--NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW  253 (277)
Q Consensus       176 ~~yY~--~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~  253 (277)
                      +.||+  +|+...+++++|+.-|++|+.++|+|..++..++.+++ +++++++++..|+.+++.-|+.++++..+|.++.
T Consensus       395 dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y-r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLt  473 (606)
T KOG0547|consen  395 DVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALY-RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILT  473 (606)
T ss_pred             chhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Confidence            34444  56666677777888888888888877777777777776 6677778888888888888888888888888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCC
Q 023753          254 QAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       254 ~~~Gd~deAi~~yekALeldPd  275 (277)
                      . +++|++|+++|++|+++.|.
T Consensus       474 D-qqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  474 D-QQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             h-HHhHHHHHHHHHHHHhhccc
Confidence            8 88888888888888888886

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.94  E-value=1e-08  Score=106.62  Aligned_cols=96  Identities=20%  Similarity=0.183  Sum_probs=91.3

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      ...++...+++++|+++|++++...|+++.++..+|.++. ..|++++|++.+++|++++|+++.+++.+|.++.. .++
T Consensus       365 ~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~-~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~-~~~  442 (765)
T PRK10049        365 LSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ-ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD-LQE  442 (765)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-hCC
Confidence            4467777899999999999999999999999999999886 89999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 023753          259 ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       259 ~deAi~~yekALeldPdD  276 (277)
                      +++|+..++++++..|++
T Consensus       443 ~~~A~~~~~~ll~~~Pd~  460 (765)
T PRK10049        443 WRQMDVLTDDVVAREPQD  460 (765)
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            999999999999999997

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=4e-09  Score=103.80  Aligned_cols=91  Identities=19%  Similarity=0.115  Sum_probs=62.2

Q ss_pred             HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 023753          184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE  263 (277)
Q Consensus       184 e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi  263 (277)
                      ....+.++|+.+|++|+++||....+|..+|.=|. .+++..+|++.|++||+++|.|..+|+.+|.+|-- ++-..=|+
T Consensus       341 Slr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyv-EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh~YaL  418 (559)
T KOG1155|consen  341 SLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYV-EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMHFYAL  418 (559)
T ss_pred             HHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHH-HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcchHHHH
Confidence            34456667777777777777777777777776554 46666777777777777777777777777776665 66666666


Q ss_pred             HHHHHHHHhCCCC
Q 023753          264 SYFDQAVKSAPDD  276 (277)
Q Consensus       264 ~~yekALeldPdD  276 (277)
                      -||++|+++.|+|
T Consensus       419 yYfqkA~~~kPnD  431 (559)
T KOG1155|consen  419 YYFQKALELKPND  431 (559)
T ss_pred             HHHHHHHhcCCCc
Confidence            6666666666665

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.91  E-value=3.2e-09  Score=76.38  Aligned_cols=66  Identities=23%  Similarity=0.290  Sum_probs=58.7

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l  251 (277)
                      ..|++++|+.+|+++++.+|+|..+++.+|.+|. ..|++++|+..+++++..+|+++.++..++.+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            4688999999999999999999999999999997 89999999999999999999998888777653

...

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.91  E-value=1.2e-08  Score=105.78  Aligned_cols=99  Identities=13%  Similarity=-0.017  Sum_probs=92.0

Q ss_pred             cchhhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023753          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW  253 (277)
Q Consensus       174 ~~~~yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~  253 (277)
                      ..-..|...+...+++++|+..++++++.+|+++.+++++|.++. ..|++++|+++|++++..+|+++.++..+|.++.
T Consensus       121 ~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~-~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~  199 (694)
T PRK15179        121 EAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD-EIGQSEQADACFERLSRQHPEFENGYVGWAQSLT  199 (694)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            344567788888899999999999999999999999999999996 8999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCC
Q 023753          254 QAHKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       254 ~~~Gd~deAi~~yekALeldP  274 (277)
                      . .|+.++|...|++|++..-
T Consensus       200 ~-~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        200 R-RGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             H-cCCHHHHHHHHHHHHHhhC
Confidence            8 9999999999999998753

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.91  E-value=1.6e-08  Score=105.22  Aligned_cols=96  Identities=16%  Similarity=0.099  Sum_probs=89.5

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G  257 (277)
                      ....++...+++++|+.+|+++++++|+++.++..++.++. ..+++++|+.+++++++.+|+++. +..+|.++.. .+
T Consensus        54 ~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g  130 (765)
T PRK10049         54 AVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AG  130 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CC
Confidence            34456777899999999999999999999999999999886 799999999999999999999999 9999999998 99


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 023753          258 DASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       258 d~deAi~~yekALeldPdD  276 (277)
                      ++++|+..|+++++++|++
T Consensus       131 ~~~~Al~~l~~al~~~P~~  149 (765)
T PRK10049        131 RHWDELRAMTQALPRAPQT  149 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999986

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=6.2e-09  Score=103.50  Aligned_cols=92  Identities=16%  Similarity=0.192  Sum_probs=87.3

Q ss_pred             HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 023753          183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA  262 (277)
Q Consensus       183 ~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deA  262 (277)
                      +...++|.+|+.+|.+||..+|+|+.++.|.|.+|. ..+++..|+..++++|+++|++..+|...|.++.. +.+|++|
T Consensus       368 ~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~-mk~ydkA  445 (539)
T KOG0548|consen  368 AFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA-MKEYDKA  445 (539)
T ss_pred             HHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHHHHH
Confidence            344689999999999999999999999999999886 89999999999999999999999999999999998 9999999


Q ss_pred             HHHHHHHHHhCCCC
Q 023753          263 ESYFDQAVKSAPDD  276 (277)
Q Consensus       263 i~~yekALeldPdD  276 (277)
                      ++.|+++++++|++
T Consensus       446 leay~eale~dp~~  459 (539)
T KOG0548|consen  446 LEAYQEALELDPSN  459 (539)
T ss_pred             HHHHHHHHhcCchh
Confidence            99999999999975

>PLN02789 farnesyltranstransferase

Probab=98.88  E-value=2.2e-08  Score=94.96  Aligned_cols=97  Identities=12%  Similarity=0.077  Sum_probs=67.5

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~G-d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~  256 (277)
                      |++.++...+..++|+..+.++|+++|++..+|+..+.++. ..+ ++++|+.+++++++.+|++..+|++.+.++.. .
T Consensus        42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~-~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l  119 (320)
T PLN02789         42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLE-ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-L  119 (320)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHH-HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-c
Confidence            66666777777777777777777777777777777777765 444 56777777777777777777777776666655 5


Q ss_pred             CCH--HHHHHHHHHHHHhCCCC
Q 023753          257 KDA--SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       257 Gd~--deAi~~yekALeldPdD  276 (277)
                      ++.  ++++.+++++++++|+|
T Consensus       120 ~~~~~~~el~~~~kal~~dpkN  141 (320)
T PLN02789        120 GPDAANKELEFTRKILSLDAKN  141 (320)
T ss_pred             CchhhHHHHHHHHHHHHhCccc
Confidence            542  55666666666666665

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.88  E-value=1.3e-08  Score=74.24  Aligned_cols=70  Identities=23%  Similarity=0.205  Sum_probs=60.6

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~  250 (277)
                      +.++...+++++|+++++++++++|+++.+|..+|.++. ..|++.+|.+.|+++++.+|+++.+....+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            356777889999999999999999999999999999887 7899999999999999999999887765553

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.88  E-value=2.4e-08  Score=99.64  Aligned_cols=96  Identities=17%  Similarity=0.206  Sum_probs=83.3

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      .+..+...+++++|+..|+++++.+|+++.++..+|.++. ..+++++|+..++++++.+|.+..++..+|.+++. .|+
T Consensus       131 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~  208 (899)
T TIGR02917       131 RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL-AENRFDEARALIDEVLTADPGNVDALLLKGDLLLS-LGN  208 (899)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-cCC
Confidence            3355566788999999999999999999989999998886 78899999999999999999999899889988888 899


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 023753          259 ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       259 ~deAi~~yekALeldPdD  276 (277)
                      +++|+.+|+++++++|++
T Consensus       209 ~~~A~~~~~~a~~~~p~~  226 (899)
T TIGR02917       209 IELALAAYRKAIALRPNN  226 (899)
T ss_pred             HHHHHHHHHHHHhhCCCC
Confidence            999999999999988875

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.87  E-value=2.3e-08  Score=108.33  Aligned_cols=55  Identities=22%  Similarity=0.330  Sum_probs=33.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       221 ~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      .+++++|+++|++|++++|+++.+++.+|.+|+. .|++++|+..|+++++++|++
T Consensus       474 ~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~-~G~~~~A~~~l~~al~~~P~~  528 (1157)
T PRK11447        474 QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ-AGQRSQADALMRRLAQQKPND  528 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCC
Confidence            4556666666666666666666666666666665 666666666666666666554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.86  E-value=3.2e-08  Score=92.51  Aligned_cols=93  Identities=16%  Similarity=0.178  Sum_probs=72.3

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHH
Q 023753          182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-GNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       182 m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n-~~al~~LA~ll~~~~Gd~d  260 (277)
                      .+...+++++|+.+|+++++.+|++..++..+|.++. ..|++++|+++|++++..+|.+ ..++..++.+|.. .|+++
T Consensus       189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g~~~  266 (389)
T PRK11788        189 QALARGDLDAARALLKKALAADPQCVRASILLGDLAL-AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA-LGDEA  266 (389)
T ss_pred             HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH-cCCHH
Confidence            3455688888888888888888888888888888776 6788888888888888887765 3556677777777 78888


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.+++++++..|+.
T Consensus       267 ~A~~~l~~~~~~~p~~  282 (389)
T PRK11788        267 EGLEFLRRALEEYPGA  282 (389)
T ss_pred             HHHHHHHHHHHhCCCc
Confidence            8888888888877753

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.85  E-value=2.2e-08  Score=108.42  Aligned_cols=99  Identities=16%  Similarity=0.147  Sum_probs=91.8

Q ss_pred             hhhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 023753          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (277)
Q Consensus       176 ~~yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~  255 (277)
                      ...+..++...+++++|+.+|+++++++|+|+.++.+++.+|. ..|++++|+++|+++++.+|+++.++..+|.++.. 
T Consensus       606 ~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~-~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~-  683 (1157)
T PRK11447        606 DLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDI-AQGDLAAARAQLAKLPATANDSLNTQRRVALAWAA-  683 (1157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHh-
Confidence            3456678888999999999999999999999999999999997 78999999999999999999999999999999998 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 023753          256 HKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       256 ~Gd~deAi~~yekALeldPdD  276 (277)
                      .|++++|+++|++++...|++
T Consensus       684 ~g~~~eA~~~~~~al~~~~~~  704 (1157)
T PRK11447        684 LGDTAAAQRTFNRLIPQAKSQ  704 (1157)
T ss_pred             CCCHHHHHHHHHHHhhhCccC
Confidence            999999999999999987654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.85  E-value=1.1e-08  Score=100.78  Aligned_cols=69  Identities=17%  Similarity=0.066  Sum_probs=52.5

Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          202 ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI---LSLYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       202 ldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a---l~~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                      .+|+++.+|+|+|.+|+ ..++|++|+.+|++||+++|+++.+   |+++|.+|.. +|++++|+++|++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence            37777777777777776 6777777777777777777777744   7777777777 77777777777777776

>PLN02789 farnesyltranstransferase

Probab=98.82  E-value=4.2e-08  Score=93.06  Aligned_cols=94  Identities=12%  Similarity=0.038  Sum_probs=84.8

Q ss_pred             HHHHhCC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753          181 NYSNNNH-GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDF--AKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (277)
Q Consensus       181 ~m~e~~G-d~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~--eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G  257 (277)
                      .++...+ ++++|+..++++++.+|++..+|++.+.++. ..++.  ++++.+++++++++|+|..+|.+.+.++.. .+
T Consensus        79 ~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~-~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~-l~  156 (320)
T PLN02789         79 LCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE-KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT-LG  156 (320)
T ss_pred             HHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH-HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hh
Confidence            3444555 6799999999999999999999999998885 66663  789999999999999999999999999998 99


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 023753          258 DASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       258 d~deAi~~yekALeldPdD  276 (277)
                      ++++|+++++++|+.+|.|
T Consensus       157 ~~~eeL~~~~~~I~~d~~N  175 (320)
T PLN02789        157 GWEDELEYCHQLLEEDVRN  175 (320)
T ss_pred             hHHHHHHHHHHHHHHCCCc
Confidence            9999999999999999987

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=3.2e-08  Score=95.91  Aligned_cols=95  Identities=16%  Similarity=0.150  Sum_probs=84.9

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPG----N-----------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI  244 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~----n-----------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a  244 (277)
                      ++.+...++|..|...|++|+..=..    +           ..++.|+|.++. +.++|.+|++++.++|.++|+|.-+
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~~~N~KA  293 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYL-KLKEYKEAIESCNKVLELDPNNVKA  293 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcCCCchhH
Confidence            35677789999999999999886331    1           246889999886 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       245 l~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ++.-|.++.. .++|+.|+..|++|++++|+|
T Consensus       294 LyRrG~A~l~-~~e~~~A~~df~ka~k~~P~N  324 (397)
T KOG0543|consen  294 LYRRGQALLA-LGEYDLARDDFQKALKLEPSN  324 (397)
T ss_pred             HHHHHHHHHh-hccHHHHHHHHHHHHHhCCCc
Confidence            9999999999 999999999999999999987

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.80  E-value=5.3e-08  Score=85.71  Aligned_cols=95  Identities=14%  Similarity=0.014  Sum_probs=82.4

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHH---
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNAL---LLGNYARFLKEVR--------GDFAKAEELCGRAILANPSDGNIL---  245 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~---al~nLA~lL~e~~--------Gd~eeA~e~~ekALeldP~n~~al---  245 (277)
                      ...+...+++++|+..|+++++.+|+++.   +++.+|.++. ..        +++++|+++|++++..+|++..++   
T Consensus        77 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~  155 (235)
T TIGR03302        77 AYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNY-NQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK  155 (235)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHH-HhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence            35677789999999999999999998876   6888898886 43        789999999999999999987553   


Q ss_pred             --------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          246 --------------SLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       246 --------------~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                                    ..+|.+++. .|++++|+..|+++++..|++
T Consensus       156 ~~~~~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~  199 (235)
T TIGR03302       156 KRMDYLRNRLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDT  199 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCC
Confidence                          356788888 999999999999999998874

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=1.7e-08  Score=100.01  Aligned_cols=97  Identities=22%  Similarity=0.223  Sum_probs=89.3

Q ss_pred             hhhHHHHHHhCCCcHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023753          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPG------NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA  249 (277)
Q Consensus       176 ~~yY~~m~e~~Gd~deAi~~yekALeldP~------n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA  249 (277)
                      ..+|.+++..++++++|++.|.+||++.|.      ++..+.+.|.++....+|+..|+.++++|+++||..-.++..||
T Consensus       465 y~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tla  544 (606)
T KOG0547|consen  465 YNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLA  544 (606)
T ss_pred             HHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHH
Confidence            357888999999999999999999999999      88888888877766789999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC
Q 023753          250 DLIWQAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       250 ~ll~~~~Gd~deAi~~yekALeld  273 (277)
                      .+.++ +++.++|+++|++++.+.
T Consensus       545 q~~lQ-~~~i~eAielFEksa~lA  567 (606)
T KOG0547|consen  545 QFELQ-RGKIDEAIELFEKSAQLA  567 (606)
T ss_pred             HHHHH-HhhHHHHHHHHHHHHHHH
Confidence            99999 999999999999998764

>PRK11906 transcriptional regulator; Provisional

Probab=98.79  E-value=2.3e-08  Score=98.58  Aligned_cols=87  Identities=9%  Similarity=0.112  Sum_probs=82.2

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF  266 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~y  266 (277)
                      .+..+|..+.++|+++||+|+.++..+|.++. ..++++.|...|++|+.++|+.+.+++..|+++.. .|+.++|++.+
T Consensus       318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~-~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~i  395 (458)
T PRK11906        318 LAAQKALELLDYVSDITTVDGKILAIMGLITG-LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARICI  395 (458)
T ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            45678999999999999999999999999887 67889999999999999999999999999999998 99999999999


Q ss_pred             HHHHHhCCC
Q 023753          267 DQAVKSAPD  275 (277)
Q Consensus       267 ekALeldPd  275 (277)
                      ++|++++|.
T Consensus       396 ~~alrLsP~  404 (458)
T PRK11906        396 DKSLQLEPR  404 (458)
T ss_pred             HHHhccCch
Confidence            999999995

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.79  E-value=6.8e-08  Score=90.35  Aligned_cols=96  Identities=16%  Similarity=0.193  Sum_probs=85.4

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n-~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~  256 (277)
                      .+...+...+++++|+.+|+++++.+|.+ ..++..++.+|. ..+++++|+.+++++++.+|+...+ ..++.++.. .
T Consensus       219 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~-~  295 (389)
T PRK11788        219 LLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ-ALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEE-Q  295 (389)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHH-h
Confidence            34467778899999999999999999987 466788888887 7899999999999999999987655 889999999 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCC
Q 023753          257 KDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       257 Gd~deAi~~yekALeldPdD  276 (277)
                      |++++|+.+|+++++.+|++
T Consensus       296 g~~~~A~~~l~~~l~~~P~~  315 (389)
T PRK11788        296 EGPEAAQALLREQLRRHPSL  315 (389)
T ss_pred             CCHHHHHHHHHHHHHhCcCH
Confidence            99999999999999999985

>PRK15331 chaperone protein SicA; Provisional

Probab=98.78  E-value=3.8e-08  Score=85.51  Aligned_cols=98  Identities=13%  Similarity=0.097  Sum_probs=89.5

Q ss_pred             CcchhhHHHHHH--hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023753          173 SGFSGSNNNYSN--NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (277)
Q Consensus       173 ~~~~~yY~~m~e--~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~  250 (277)
                      +..+..|+..+.  ..|++++|+..|+-....||.|+.+|..||.++. ..++|++|+.+|..|..++++||...++.|.
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq  113 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ  113 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence            445666776655  3699999999999999999999999999999996 8999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Q 023753          251 LIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       251 ll~~~~Gd~deAi~~yekALel  272 (277)
                      |++. .++.+.|+.+|+.++..
T Consensus       114 C~l~-l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        114 CQLL-MRKAAKARQCFELVNER  134 (165)
T ss_pred             HHHH-hCCHHHHHHHHHHHHhC
Confidence            9999 99999999999999883

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.78  E-value=5.5e-08  Score=101.35  Aligned_cols=95  Identities=22%  Similarity=0.318  Sum_probs=89.4

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      +...+.|++++|+..+..+|+++|.++.+|+.||.+|. ..||.++|..++-.|..++|.|...|..++....+ ++.++
T Consensus       147 N~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyE-qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~~i~  224 (895)
T KOG2076|consen  147 NNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYE-QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LGNIN  224 (895)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cccHH
Confidence            33445699999999999999999999999999999985 89999999999999999999999999999999988 99999


Q ss_pred             HHHHHHHHHHHhCCCCC
Q 023753          261 RAESYFDQAVKSAPDDW  277 (277)
Q Consensus       261 eAi~~yekALeldPdD~  277 (277)
                      +|+-+|.+||+.+|.+|
T Consensus       225 qA~~cy~rAI~~~p~n~  241 (895)
T KOG2076|consen  225 QARYCYSRAIQANPSNW  241 (895)
T ss_pred             HHHHHHHHHHhcCCcch
Confidence            99999999999999987

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.76  E-value=5.5e-08  Score=97.75  Aligned_cols=102  Identities=13%  Similarity=0.058  Sum_probs=81.6

Q ss_pred             CcchhhHHHHHHh----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------------------------------
Q 023753          173 SGFSGSNNNYSNN----NHGSSSTDAYYEKMIEANPGNALLLGNYARFLK------------------------------  218 (277)
Q Consensus       173 ~~~~~yY~~m~e~----~Gd~deAi~~yekALeldP~n~~al~nLA~lL~------------------------------  218 (277)
                      ++++.|++.....    ..++.+|+.+|++|+++||+++.++..++.++.                              
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            5566666653332    134779999999999999999877766554321                              


Q ss_pred             -------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          219 -------------EVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       219 -------------e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                                   ...+++++|+.+|++|+.++| +..+|..+|.++.. .|++++|+++|++|++++|.+
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~~~~~A~~L~P~~  486 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAADAYSTAFNLRPGE  486 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCC
Confidence                         123589999999999999999 57899999999988 999999999999999999985

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.76  E-value=6.8e-08  Score=89.43  Aligned_cols=92  Identities=13%  Similarity=0.088  Sum_probs=82.1

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHc
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN----ILSLYADLIWQAH  256 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~----al~~LA~ll~~~~  256 (277)
                      ..+...|++++|+..|+++++++|+++.++..+|.+++ ..|++++|+.++++++...|.++.    .+..+|.++.. .
T Consensus       122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~-~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~-~  199 (355)
T cd05804         122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE-MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE-R  199 (355)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH-C
Confidence            46677899999999999999999999999999999997 799999999999999999875443    35578999998 9


Q ss_pred             CCHHHHHHHHHHHHHhCC
Q 023753          257 KDASRAESYFDQAVKSAP  274 (277)
Q Consensus       257 Gd~deAi~~yekALeldP  274 (277)
                      |++++|+.+|++++...|
T Consensus       200 G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         200 GDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             CCHHHHHHHHHHHhcccc
Confidence            999999999999987766

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.76  E-value=3.6e-08  Score=71.83  Aligned_cols=61  Identities=23%  Similarity=0.324  Sum_probs=57.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          214 ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       214 A~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ..+|. ..+++++|++++++++.++|+++.++..+|.+++. .|++++|+..|+++++..|++
T Consensus         2 ~~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~   62 (73)
T PF13371_consen    2 KQIYL-QQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDD   62 (73)
T ss_pred             HHHHH-hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCc
Confidence            34565 78999999999999999999999999999999999 999999999999999999986

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=5.7e-08  Score=95.80  Aligned_cols=100  Identities=10%  Similarity=0.040  Sum_probs=87.8

Q ss_pred             CcchhhHHHHHHhCC-----------------CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023753          173 SGFSGSNNNYSNNNH-----------------GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI  235 (277)
Q Consensus       173 ~~~~~yY~~m~e~~G-----------------d~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekAL  235 (277)
                      +-...||+.++.-+.                 +...|+..|++|++++|.|..+|+.+|+.|. ..+-..=|+-||++|+
T Consensus       347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLyYfqkA~  425 (559)
T KOG1155|consen  347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALYYFQKAL  425 (559)
T ss_pred             HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHHHHHHHH
Confidence            344556766665554                 4458999999999999999999999999996 7898999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753          236 LANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       236 eldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldP  274 (277)
                      ++.|+|+..|..||.||.. .++.++|+++|.+|+...-
T Consensus       426 ~~kPnDsRlw~aLG~CY~k-l~~~~eAiKCykrai~~~d  463 (559)
T KOG1155|consen  426 ELKPNDSRLWVALGECYEK-LNRLEEAIKCYKRAILLGD  463 (559)
T ss_pred             hcCCCchHHHHHHHHHHHH-hccHHHHHHHHHHHHhccc
Confidence            9999999999999999988 9999999999999998753

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.74  E-value=5.4e-08  Score=85.80  Aligned_cols=87  Identities=22%  Similarity=0.204  Sum_probs=69.8

Q ss_pred             cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--
Q 023753          189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVR---------GDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK--  257 (277)
Q Consensus       189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~---------Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G--  257 (277)
                      ++.|.+.++.+...||.|+.+++++|.+|.+..         .-+++|+.-|++||.++|+..++++++|.+|.. ++  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts-~A~l   85 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS-LAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-HHhh
Confidence            568999999999999999999999998876321         246789999999999999999999999999876 43  


Q ss_pred             ---------CHHHHHHHHHHHHHhCCCC
Q 023753          258 ---------DASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       258 ---------d~deAi~~yekALeldPdD  276 (277)
                               -|++|..+|++|++.+|+|
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~n  113 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNN  113 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                     3789999999999999986

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.74  E-value=5.8e-08  Score=83.83  Aligned_cols=77  Identities=16%  Similarity=0.047  Sum_probs=71.4

Q ss_pred             HHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Q 023753          199 MIEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW  277 (277)
Q Consensus       199 ALeld-P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD~  277 (277)
                      ...++ ++.-..++.+|..++ ..|++++|+..|+.+..+||.++..|++||.++.. +|++++|+..|.+|+.++|+|+
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly-~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~~ddp  103 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLM-EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QKHWGEAIYAYGRAAQIKIDAP  103 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCc
Confidence            34567 778889999999887 79999999999999999999999999999999988 9999999999999999999984

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.69  E-value=9.8e-08  Score=86.74  Aligned_cols=98  Identities=23%  Similarity=0.204  Sum_probs=78.0

Q ss_pred             hhHHHHHHhCCCcHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753          177 GSNNNYSNNNHGSSSTDAYYEKMIEAN--PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (277)
Q Consensus       177 ~yY~~m~e~~Gd~deAi~~yekALeld--P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~  254 (277)
                      ..+..++...++++++...++++.+..  +.++.+|..+|.++. ..|+.++|+.+|++|++++|+|+.++..+++++..
T Consensus       114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~  192 (280)
T PF13429_consen  114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNALAWLLID  192 (280)
T ss_dssp             ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            345566777899999999999988766  678999999999886 89999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC
Q 023753          255 AHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       255 ~~Gd~deAi~~yekALeldPdD  276 (277)
                       .|++++|.+.++...+..|+|
T Consensus       193 -~~~~~~~~~~l~~~~~~~~~~  213 (280)
T PF13429_consen  193 -MGDYDEAREALKRLLKAAPDD  213 (280)
T ss_dssp             -TCHHHHHHHHHHHHHHH-HTS
T ss_pred             -CCChHHHHHHHHHHHHHCcCH
Confidence             999999888888887776554

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.67  E-value=4.2e-08  Score=70.51  Aligned_cols=56  Identities=27%  Similarity=0.431  Sum_probs=53.0

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       220 ~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ..|++++|+++|++++..+|++..+++.+|.+|+. .|++++|+.++++++..+|++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCH
Confidence            57999999999999999999999999999999999 999999999999999999984

...

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=1.1e-07  Score=94.80  Aligned_cols=94  Identities=16%  Similarity=0.165  Sum_probs=88.2

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ++....++++.|+.+|..||.++|.|-..+.|...+|. ..++|++|+.--.+.++++|+-+..|..+|..++- .|+|+
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a-~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~-lg~~~   87 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYA-SLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG-LGDYE   87 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHH-HHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh-cccHH
Confidence            44556799999999999999999999999999988886 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+..|.+.|+.+|+|
T Consensus        88 eA~~ay~~GL~~d~~n  103 (539)
T KOG0548|consen   88 EAILAYSEGLEKDPSN  103 (539)
T ss_pred             HHHHHHHHHhhcCCch
Confidence            9999999999999986

>PRK11906 transcriptional regulator; Provisional

Probab=98.64  E-value=1.8e-07  Score=92.48  Aligned_cols=103  Identities=14%  Similarity=0.051  Sum_probs=87.9

Q ss_pred             Ccc--hhhHHHHHHh----CCCcHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHH
Q 023753          173 SGF--SGSNNNYSNN----NHGSSSTDAYYEKMI---EANPGNALLLGNYARFLKEV--------RGDFAKAEELCGRAI  235 (277)
Q Consensus       173 ~~~--~~yY~~m~e~----~Gd~deAi~~yekAL---eldP~n~~al~nLA~lL~e~--------~Gd~eeA~e~~ekAL  235 (277)
                      ++|  +.|.+.+...    ....+.|..+|.+|+   ++||+++.++..+|.+++..        ..+..+|.++.++|+
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            566  6666655552    245678999999999   99999999999999887632        235678999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          236 LANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       236 eldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +++|.|+.++..+|.+++. .++++.|+..|++|+.++|+.
T Consensus       332 eld~~Da~a~~~~g~~~~~-~~~~~~a~~~f~rA~~L~Pn~  371 (458)
T PRK11906        332 DITTVDGKILAIMGLITGL-SGQAKVSHILFEQAKIHSTDI  371 (458)
T ss_pred             hcCCCCHHHHHHHHHHHHh-hcchhhHHHHHHHHhhcCCcc
Confidence            9999999999999999999 899999999999999999985

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=2.3e-07  Score=93.13  Aligned_cols=90  Identities=16%  Similarity=0.327  Sum_probs=77.0

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHH-----------------------------------------HHHHHHHHHHHcCC
Q 023753          185 NNHGSSSTDAYYEKMIEANPGNALL-----------------------------------------LGNYARFLKEVRGD  223 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP~n~~a-----------------------------------------l~nLA~lL~e~~Gd  223 (277)
                      ..+++.-|..+|.+|+.+.|.+|.+                                         +.|+|.++. +.+.
T Consensus       392 ~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R-kl~~  470 (611)
T KOG1173|consen  392 RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR-KLNK  470 (611)
T ss_pred             HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH-HHhh
Confidence            3567778888888888888888753                                         456666665 6788


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          224 FAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       224 ~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +++|+.+|++||.+.|.++.++..+|.+|.. +|+++.|+++|.+||.++|+|
T Consensus       471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~l-lgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  471 YEEAIDYYQKALLLSPKDASTHASIGYIYHL-LGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             HHHHHHHHHHHHHcCCCchhHHHHHHHHHHH-hcChHHHHHHHHHHHhcCCcc
Confidence            9999999999999999999999999999998 999999999999999999987

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.62  E-value=3.4e-07  Score=76.11  Aligned_cols=89  Identities=18%  Similarity=0.194  Sum_probs=74.0

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~  255 (277)
                      ...++...|++++|+..|++++...|++   +.+.+.+|.++. ..+++++|+..++. +.-.+-.+.++..+|.++.. 
T Consensus        54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~-  130 (145)
T PF09976_consen   54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLA-  130 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHH-
Confidence            3466667899999999999999988766   457888898886 78999999999966 44456677788889999999 


Q ss_pred             cCCHHHHHHHHHHHH
Q 023753          256 HKDASRAESYFDQAV  270 (277)
Q Consensus       256 ~Gd~deAi~~yekAL  270 (277)
                      .|++++|+..|++||
T Consensus       131 ~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  131 QGDYDEARAAYQKAL  145 (145)
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999999999885

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.60  E-value=3.6e-07  Score=84.33  Aligned_cols=97  Identities=21%  Similarity=0.176  Sum_probs=88.7

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G  257 (277)
                      -+.+.+...|+-+.+..+..++...+|.+..++..+|..+. ..|+|..|+..+++|..++|+|..+|..+|.+|.+ .|
T Consensus        71 ~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~G  148 (257)
T COG5010          71 KLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LG  148 (257)
T ss_pred             HHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-cc
Confidence            35556666788888899999999999999999988998886 89999999999999999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 023753          258 DASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       258 d~deAi~~yekALeldPdD  276 (277)
                      ++++|...|.+|+++.|++
T Consensus       149 r~~~Ar~ay~qAl~L~~~~  167 (257)
T COG5010         149 RFDEARRAYRQALELAPNE  167 (257)
T ss_pred             ChhHHHHHHHHHHHhccCC
Confidence            9999999999999999986

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.59  E-value=2.9e-07  Score=94.90  Aligned_cols=95  Identities=14%  Similarity=0.138  Sum_probs=87.7

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEE--LCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e--~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      .++...+...+|.+.|..|+.+||+++.....+|.++. ..|+..-|..  .+..|+++||.|+.+|+++|.++.. .||
T Consensus       692 ~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-~Gd  769 (799)
T KOG4162|consen  692 LLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-LGD  769 (799)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-ccc
Confidence            56677899999999999999999999999999999996 7887777777  9999999999999999999999998 999


Q ss_pred             HHHHHHHHHHHHHhCCCCC
Q 023753          259 ASRAESYFDQAVKSAPDDW  277 (277)
Q Consensus       259 ~deAi~~yekALeldPdD~  277 (277)
                      .++|.++|+.|+++++.++
T Consensus       770 ~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  770 SKQAAECFQAALQLEESNP  788 (799)
T ss_pred             hHHHHHHHHHHHhhccCCC
Confidence            9999999999999998763

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.59  E-value=3.3e-07  Score=64.52  Aligned_cols=66  Identities=20%  Similarity=0.290  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       209 al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +++++|.++. ..+++++|+.+|+++++..|.+..++..+|.++.. .+++++|+.+|++++++.|.+
T Consensus         2 ~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~   67 (100)
T cd00189           2 ALLNLGNLYY-KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDN   67 (100)
T ss_pred             HHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcc
Confidence            5778898887 78999999999999999999999999999999999 999999999999999998875

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.55  E-value=1.4e-07  Score=90.79  Aligned_cols=93  Identities=18%  Similarity=0.090  Sum_probs=87.3

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 023753          182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR  261 (277)
Q Consensus       182 m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de  261 (277)
                      -|..+|.|++|+.||.++|.++|.|+..+.|.|.+|+ +.+.|..|+.-|+.||.+|.....+|..-+.+... +|...+
T Consensus       106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl-k~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~-Lg~~~E  183 (536)
T KOG4648|consen  106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYL-KQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES-LGNNME  183 (536)
T ss_pred             hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH-HhhHHH
Confidence            3556799999999999999999999999999999997 89999999999999999999999999999998888 999999


Q ss_pred             HHHHHHHHHHhCCCC
Q 023753          262 AESYFDQAVKSAPDD  276 (277)
Q Consensus       262 Ai~~yekALeldPdD  276 (277)
                      |.+-++.+|++.|++
T Consensus       184 AKkD~E~vL~LEP~~  198 (536)
T KOG4648|consen  184 AKKDCETVLALEPKN  198 (536)
T ss_pred             HHHhHHHHHhhCccc
Confidence            999999999999985

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.55  E-value=7.5e-07  Score=88.15  Aligned_cols=89  Identities=16%  Similarity=0.155  Sum_probs=80.0

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY  265 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~  265 (277)
                      .+++++|+..++..+...|+|+.++-..+.++. ..++.++|++.+++|+.++|+.+....++|.+|++ .|++++|+.+
T Consensus       319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~-~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~eai~~  396 (484)
T COG4783         319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILL-EANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQEAIRI  396 (484)
T ss_pred             hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChHHHHHH
Confidence            488899999999999999999999888888886 78899999999999999999998889999999998 8999999999


Q ss_pred             HHHHHHhCCCC
Q 023753          266 FDQAVKSAPDD  276 (277)
Q Consensus       266 yekALeldPdD  276 (277)
                      +++.+..+|+|
T Consensus       397 L~~~~~~~p~d  407 (484)
T COG4783         397 LNRYLFNDPED  407 (484)
T ss_pred             HHHHhhcCCCC
Confidence            99999998887

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.54  E-value=2.2e-06  Score=70.77  Aligned_cols=89  Identities=15%  Similarity=0.142  Sum_probs=79.4

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYADLIWQ  254 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~---n~~al~~LA~ll~~  254 (277)
                      .++...|+.++|+.+|++|++.....   ..++..+|..|. ..|++++|+..+++++...|+   +..+...++.+++.
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~   87 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN   87 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence            56677899999999999999986655   468889999997 899999999999999999898   88888889999999


Q ss_pred             HcCCHHHHHHHHHHHHH
Q 023753          255 AHKDASRAESYFDQAVK  271 (277)
Q Consensus       255 ~~Gd~deAi~~yekALe  271 (277)
                       .|+.++|+..+-.++.
T Consensus        88 -~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   88 -LGRPKEALEWLLEALA  103 (120)
T ss_pred             -CCCHHHHHHHHHHHHH
Confidence             9999999999888775

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.54  E-value=1.1e-07  Score=70.31  Aligned_cols=67  Identities=19%  Similarity=0.265  Sum_probs=56.1

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C-C---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753          205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILAN---P-S---DGNILSLYADLIWQAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       205 ~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld---P-~---n~~al~~LA~ll~~~~Gd~deAi~~yekALeld  273 (277)
                      +-+.++.++|.+|. ..+++++|+.+|++|+++.   + +   -+.++.++|.++.. .|++++|+++|++|+++.
T Consensus         3 ~~a~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    3 DTANAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhh
Confidence            34578899999997 8999999999999999762   2 2   25578899999999 999999999999999863

...

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.53  E-value=3e-07  Score=92.35  Aligned_cols=86  Identities=13%  Similarity=0.195  Sum_probs=79.8

Q ss_pred             cHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023753          189 SSSTDAYYEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF  266 (277)
Q Consensus       189 ~deAi~~yekALeldP--~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~y  266 (277)
                      +..-.++|..|...+|  .++.+...||.+|+ ..++|++|+.||+.||..+|+|...|+.||..+.+ ..+.++|+..|
T Consensus       410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~-ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsAY  487 (579)
T KOG1125|consen  410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYN-LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISAY  487 (579)
T ss_pred             HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh-cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHHH
Confidence            3456788899999999  79999999999888 78999999999999999999999999999999999 89999999999


Q ss_pred             HHHHHhCCCC
Q 023753          267 DQAVKSAPDD  276 (277)
Q Consensus       267 ekALeldPdD  276 (277)
                      ++|+++.|..
T Consensus       488 ~rALqLqP~y  497 (579)
T KOG1125|consen  488 NRALQLQPGY  497 (579)
T ss_pred             HHHHhcCCCe
Confidence            9999999975

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.51  E-value=8.1e-07  Score=93.85  Aligned_cols=98  Identities=11%  Similarity=0.084  Sum_probs=71.9

Q ss_pred             hhHHHHHH-hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 023753          177 GSNNNYSN-NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (277)
Q Consensus       177 ~yY~~m~e-~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~  255 (277)
                      .|-+.++. .+|+++.|+..|+++++.+|+++.+...++.++. ..|++++|+.++++++.-+|.....+..+|.++.. 
T Consensus        37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~-  114 (822)
T PRK14574         37 QYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN-  114 (822)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-
Confidence            34444433 3599999999999999999999644447776665 67888888888888883333444444444667877 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 023753          256 HKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       256 ~Gd~deAi~~yekALeldPdD  276 (277)
                      +|++++|+++|+++++.+|++
T Consensus       115 ~gdyd~Aiely~kaL~~dP~n  135 (822)
T PRK14574        115 EKRWDQALALWQSSLKKDPTN  135 (822)
T ss_pred             cCCHHHHHHHHHHHHhhCCCC
Confidence            888888888888888888876

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.51  E-value=8.8e-07  Score=82.02  Aligned_cols=89  Identities=16%  Similarity=0.237  Sum_probs=66.4

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHH
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK---DASRA  262 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G---d~deA  262 (277)
                      +|..-+|++.+..-++..++|.++|..++.+|. ..++|++|.-||++.+-+.|.++..+..||.+++- +|   +++-|
T Consensus       133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~-~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt-~gg~eN~~~a  210 (289)
T KOG3060|consen  133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYL-SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT-QGGAENLELA  210 (289)
T ss_pred             cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHH
Confidence            455556666666666666777777888887776 67888888888888888888888888888888776 54   45578


Q ss_pred             HHHHHHHHHhCCCC
Q 023753          263 ESYFDQAVKSAPDD  276 (277)
Q Consensus       263 i~~yekALeldPdD  276 (277)
                      .+||.+|++++|.+
T Consensus       211 rkyy~~alkl~~~~  224 (289)
T KOG3060|consen  211 RKYYERALKLNPKN  224 (289)
T ss_pred             HHHHHHHHHhChHh
Confidence            88888888888754

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.49  E-value=8.4e-07  Score=75.11  Aligned_cols=88  Identities=15%  Similarity=0.114  Sum_probs=75.6

Q ss_pred             CCcHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGN--ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYADLIWQAHKDASR  261 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n--~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~---n~~al~~LA~ll~~~~Gd~de  261 (277)
                      .++..+...+.+.++.++.+  ..+++++|.++. ..+++++|+.+|++|+.+.|+   .+.++.++|.++.. .|++++
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~e   90 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHTK   90 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHHH
Confidence            55777778887777777776  567799998886 789999999999999999776   34589999999999 999999


Q ss_pred             HHHHHHHHHHhCCCC
Q 023753          262 AESYFDQAVKSAPDD  276 (277)
Q Consensus       262 Ai~~yekALeldPdD  276 (277)
                      |+.+|++|++++|..
T Consensus        91 A~~~~~~Al~~~~~~  105 (168)
T CHL00033         91 ALEYYFQALERNPFL  105 (168)
T ss_pred             HHHHHHHHHHhCcCc
Confidence            999999999998864

>TIGR00540 hemY_coli hemY protein

Probab=98.49  E-value=1e-06  Score=85.20  Aligned_cols=80  Identities=16%  Similarity=0.192  Sum_probs=39.2

Q ss_pred             CcHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 023753          188 GSSSTDAYYEKMIEANPGNA--LLLGNYARFLKEVRGDFAKAEELCG--RAILANPSDGNILSLYADLIWQAHKDASRAE  263 (277)
Q Consensus       188 d~deAi~~yekALeldP~n~--~al~nLA~lL~e~~Gd~eeA~e~~e--kALeldP~n~~al~~LA~ll~~~~Gd~deAi  263 (277)
                      +.+++++.++++++.+|+|+  .++..||++++ ..+++++|.++|+  ++++.+|++.. +..+|.++++ .|+.++|.
T Consensus       314 ~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~-~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~-~g~~~~A~  390 (409)
T TIGR00540       314 DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLM-KHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQ-AGDKAEAA  390 (409)
T ss_pred             ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-HcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHH-cCCHHHHH
Confidence            34445555555555555555  44445555444 4455555555555  34444444433 2245555555 55555555


Q ss_pred             HHHHHHH
Q 023753          264 SYFDQAV  270 (277)
Q Consensus       264 ~~yekAL  270 (277)
                      ++|++++
T Consensus       391 ~~~~~~l  397 (409)
T TIGR00540       391 AMRQDSL  397 (409)
T ss_pred             HHHHHHH
Confidence            5555543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=1.1e-06  Score=81.37  Aligned_cols=99  Identities=14%  Similarity=0.162  Sum_probs=90.3

Q ss_pred             hhhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 023753          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (277)
Q Consensus       176 ~~yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~  255 (277)
                      .-.+.-.+++.+.+++|+++|+..|+-||.|..++-..-.++. .+|+.-+|++.+..-++.-++|+++|..++.+|+. 
T Consensus        89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-  166 (289)
T KOG3060|consen   89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK-AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS-  166 (289)
T ss_pred             HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-
Confidence            3456677888999999999999999999999988876666675 78988999999999999999999999999999999 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 023753          256 HKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       256 ~Gd~deAi~~yekALeldPdD  276 (277)
                      .++|++|.-+|++.+-++|.+
T Consensus       167 ~~~f~kA~fClEE~ll~~P~n  187 (289)
T KOG3060|consen  167 EGDFEKAAFCLEELLLIQPFN  187 (289)
T ss_pred             HhHHHHHHHHHHHHHHcCCCc
Confidence            999999999999999999976

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.47  E-value=1e-06  Score=81.65  Aligned_cols=86  Identities=20%  Similarity=0.171  Sum_probs=71.7

Q ss_pred             CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023753          188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFD  267 (277)
Q Consensus       188 d~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~ye  267 (277)
                      ....+...++.....+|....++..+|.++. ..|++++|+..++++++++|+++.++..+|.+++. .|++++|+.+|+
T Consensus        95 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~  172 (355)
T cd05804          95 MRDHVARVLPLWAPENPDYWYLLGMLAFGLE-EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFME  172 (355)
T ss_pred             CchhHHHHHhccCcCCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            3344444444444566667777777887776 78999999999999999999999999999999999 999999999999


Q ss_pred             HHHHhCCC
Q 023753          268 QAVKSAPD  275 (277)
Q Consensus       268 kALeldPd  275 (277)
                      +++...|.
T Consensus       173 ~~l~~~~~  180 (355)
T cd05804         173 SWRDTWDC  180 (355)
T ss_pred             hhhhccCC
Confidence            99998774

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.47  E-value=1.1e-06  Score=84.09  Aligned_cols=74  Identities=14%  Similarity=0.024  Sum_probs=68.3

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~  254 (277)
                      ..++...+++++|+.+|++|++++|+++.+++++|.+|+ ..|+|++|+.+|++|++++|+++.+...++.+...
T Consensus        43 a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~-~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k  116 (356)
T PLN03088         43 AQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM-KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK  116 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            356677899999999999999999999999999999997 89999999999999999999999999998888655

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.45  E-value=6.1e-07  Score=84.35  Aligned_cols=78  Identities=12%  Similarity=0.058  Sum_probs=69.6

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      .+|...|.++.|++.++.||.+||.+..+|..||.+|. .+|++++|+++|++||+++|+|..+..+|..+-.. .++..
T Consensus       123 AAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~-~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~-l~e~~  200 (304)
T KOG0553|consen  123 AAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL-ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK-LNEPK  200 (304)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH-ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH-hcCCC
Confidence            55666799999999999999999999999999999997 89999999999999999999999999998877655 54443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=1.3e-06  Score=81.96  Aligned_cols=89  Identities=19%  Similarity=0.158  Sum_probs=80.6

Q ss_pred             CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHH
Q 023753          188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK--DASRAESY  265 (277)
Q Consensus       188 d~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G--d~deAi~~  265 (277)
                      ..++.+.-++.-|+.||+|+.-|..||.+|. ..+++..|...|.+|+++.|+|++++..+|.+++...+  +-.+|...
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym-~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYM-ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            4678889999999999999999999999997 89999999999999999999999999999999887333  34689999


Q ss_pred             HHHHHHhCCCCC
Q 023753          266 FDQAVKSAPDDW  277 (277)
Q Consensus       266 yekALeldPdD~  277 (277)
                      |++|++++|+|.
T Consensus       216 l~~al~~D~~~i  227 (287)
T COG4235         216 LRQALALDPANI  227 (287)
T ss_pred             HHHHHhcCCccH
Confidence            999999999873

>TIGR00540 hemY_coli hemY protein

Probab=98.43  E-value=1.6e-06  Score=83.75  Aligned_cols=102  Identities=13%  Similarity=0.025  Sum_probs=83.4

Q ss_pred             cchhhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHH
Q 023753          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLL-GNYARFLKEVRGDFAKAEELCGRAILANPSDG--NILSLYAD  250 (277)
Q Consensus       174 ~~~~yY~~m~e~~Gd~deAi~~yekALeldP~n~~al-~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~--~al~~LA~  250 (277)
                      .....+...+...|++++|+..++++++..|++.... ..+-.+.....++.+++++.++++++.+|+|+  .++..+|+
T Consensus       264 ~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~  343 (409)
T TIGR00540       264 ALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQ  343 (409)
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            3445666788889999999999999999999998531 11111111235789999999999999999999  89999999


Q ss_pred             HHHHHcCCHHHHHHHHH--HHHHhCCCC
Q 023753          251 LIWQAHKDASRAESYFD--QAVKSAPDD  276 (277)
Q Consensus       251 ll~~~~Gd~deAi~~ye--kALeldPdD  276 (277)
                      +++. .+++++|.++|+  ++++..|++
T Consensus       344 l~~~-~~~~~~A~~~le~a~a~~~~p~~  370 (409)
T TIGR00540       344 LLMK-HGEFIEAADAFKNVAACKEQLDA  370 (409)
T ss_pred             HHHH-cccHHHHHHHHHHhHHhhcCCCH
Confidence            9999 999999999999  688888874

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.42  E-value=1.1e-06  Score=74.94  Aligned_cols=79  Identities=19%  Similarity=0.222  Sum_probs=66.4

Q ss_pred             HHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023753          196 YEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAV  270 (277)
Q Consensus       196 yekALeldP--~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi~~yekAL  270 (277)
                      +.+.+.+++  ..+.+++++|.++. ..+++++|+.+|++|+.+.|+.   ..++..+|.++.. .|++++|+.+|++|+
T Consensus        22 ~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al   99 (172)
T PRK02603         22 ILKILPINKKAKEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQAL   99 (172)
T ss_pred             HHHHcccccHhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence            344444443  45677899999886 7899999999999999988764   4689999999999 999999999999999


Q ss_pred             HhCCCC
Q 023753          271 KSAPDD  276 (277)
Q Consensus       271 eldPdD  276 (277)
                      ++.|++
T Consensus       100 ~~~p~~  105 (172)
T PRK02603        100 ELNPKQ  105 (172)
T ss_pred             HhCccc
Confidence            999975

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.42  E-value=2.3e-06  Score=66.13  Aligned_cols=68  Identities=18%  Similarity=0.154  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +.+++.+|..+. ..+++++|+.+|++++..+|++   +.+++.+|.+++. .+++++|+.+|++++..+|++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~   72 (119)
T TIGR02795         2 EEAYYDAALLVL-KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKS   72 (119)
T ss_pred             cHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCC
Confidence            456788998886 7999999999999999999987   5788999999999 999999999999999999874

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.42  E-value=2.1e-06  Score=82.93  Aligned_cols=84  Identities=13%  Similarity=0.190  Sum_probs=74.1

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF  266 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~y  266 (277)
                      ++.+++++.+++.++.+|+|+..+..+|.++. ..+++++|.++|+++++++|++.. +..++.++.. +|+.++|..+|
T Consensus       308 ~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~-~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~-~g~~~~A~~~~  384 (398)
T PRK10747        308 NNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM-KHGEWQEASLAFRAALKQRPDAYD-YAWLADALDR-LHKPEEAAAMR  384 (398)
T ss_pred             CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHH-cCCHHHHHHHH
Confidence            77889999999999999999999999999886 789999999999999999998765 4468888888 99999999999


Q ss_pred             HHHHHhC
Q 023753          267 DQAVKSA  273 (277)
Q Consensus       267 ekALeld  273 (277)
                      ++++.+.
T Consensus       385 ~~~l~~~  391 (398)
T PRK10747        385 RDGLMLT  391 (398)
T ss_pred             HHHHhhh
Confidence            9998764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.41  E-value=8.1e-07  Score=85.55  Aligned_cols=96  Identities=17%  Similarity=0.126  Sum_probs=90.3

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      .+..+.+++++..|+..|-.|++.||+|..+++..|.+|. ..|+-..|+.-+.++|++.|+...+...-|.+++. +|+
T Consensus        44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yL-AmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK-~Ge  121 (504)
T KOG0624|consen   44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYL-AMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK-QGE  121 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh-ccc
Confidence            4466677899999999999999999999999999999986 89999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 023753          259 ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       259 ~deAi~~yekALeldPdD  276 (277)
                      +++|+.-|+++|+.+|++
T Consensus       122 le~A~~DF~~vl~~~~s~  139 (504)
T KOG0624|consen  122 LEQAEADFDQVLQHEPSN  139 (504)
T ss_pred             HHHHHHHHHHHHhcCCCc
Confidence            999999999999999965

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.38  E-value=3.5e-06  Score=83.51  Aligned_cols=89  Identities=18%  Similarity=0.145  Sum_probs=77.3

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      .++...++.++|++.+++++.++|+.+..+.+||.+|. +.|++.+|+.++++.+..+|+|+..|..||..|-. +|+..
T Consensus       348 ~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all-~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~-~g~~~  425 (484)
T COG4783         348 DILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL-KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE-LGNRA  425 (484)
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH-hCchH
Confidence            56667799999999999999999999999999999997 89999999999999999999999999999998877 77655


Q ss_pred             HHHHHHHHHHH
Q 023753          261 RAESYFDQAVK  271 (277)
Q Consensus       261 eAi~~yekALe  271 (277)
                      +|...+..+..
T Consensus       426 ~a~~A~AE~~~  436 (484)
T COG4783         426 EALLARAEGYA  436 (484)
T ss_pred             HHHHHHHHHHH
Confidence            55555444433

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.37  E-value=3.1e-06  Score=76.60  Aligned_cols=92  Identities=22%  Similarity=0.272  Sum_probs=82.4

Q ss_pred             HHhCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753          183 SNNNHGSSSTDAYYEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (277)
Q Consensus       183 ~e~~Gd~deAi~~yekALeldP~n~-----~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G  257 (277)
                      +..+|+|++|..-|..||++-|.-+     ..+.|.|.++. +.+..+.|+..+.+||+++|.+-.++..-|.+|-+ +.
T Consensus       105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~i-Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek-~e  182 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALI-KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK-ME  182 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHH-HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-hh
Confidence            3457899999999999999999864     45667787775 88999999999999999999999999999999999 89


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 023753          258 DASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       258 d~deAi~~yekALeldPdD  276 (277)
                      .|++|+.-|++.++++|..
T Consensus       183 k~eealeDyKki~E~dPs~  201 (271)
T KOG4234|consen  183 KYEEALEDYKKILESDPSR  201 (271)
T ss_pred             hHHHHHHHHHHHHHhCcch
Confidence            9999999999999999963

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.35  E-value=5.7e-06  Score=76.85  Aligned_cols=97  Identities=14%  Similarity=0.169  Sum_probs=87.4

Q ss_pred             hHHHHHHh--CCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 023753          178 SNNNYSNN--NHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYA  249 (277)
Q Consensus       178 yY~~m~e~--~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA  249 (277)
                      .|..++..  .++|..|+..|+.-|+..|+.   +.++|.||.+++ .+|+|+.|...|..+++-.|+.   |++++-+|
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y-~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY-AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH-hcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            56655553  588999999999999999997   588999999998 8999999999999999998864   68899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          250 DLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       250 ~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      .++.. +++.++|...|+++++..|+.
T Consensus       223 ~~~~~-l~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         223 VSLGR-LGNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             HHHHH-hcCHHHHHHHHHHHHHHCCCC
Confidence            99999 999999999999999999974

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.35  E-value=2e-06  Score=86.47  Aligned_cols=100  Identities=15%  Similarity=0.144  Sum_probs=86.5

Q ss_pred             CCcchhhHHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 023753          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA------  237 (277)
Q Consensus       172 ~~~~~~yY~~m~e~~Gd~deAi~~yekALel--------dP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel------  237 (277)
                      ...+..+...+|...+++++|+..|++|+++        .|.-...+.++|.+|. ..++|.+|+..|++|+.+      
T Consensus       198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e~~~G  276 (508)
T KOG1840|consen  198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-SLGKYDEAVNLYEEALTIREEVFG  276 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHhcC
Confidence            3445667889999999999999999999999        6666666777999886 899999999999999987      


Q ss_pred             --CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753          238 --NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       238 --dP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeld  273 (277)
                        +|.-+.++.+||.+|.. .|+|++|..++++|+++.
T Consensus       277 ~~h~~va~~l~nLa~ly~~-~GKf~EA~~~~e~Al~I~  313 (508)
T KOG1840|consen  277 EDHPAVAATLNNLAVLYYK-QGKFAEAEEYCERALEIY  313 (508)
T ss_pred             CCCHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHH
Confidence              44556679999999999 999999999999999873

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.34  E-value=4e-06  Score=80.99  Aligned_cols=96  Identities=14%  Similarity=0.102  Sum_probs=83.9

Q ss_pred             hhhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 023753          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (277)
Q Consensus       176 ~~yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~  255 (277)
                      ...|...+...|+.++|...++++++. |.++.....++.+   ..+++++|++.+++.++..|+|+..+..+|.++.. 
T Consensus       266 ~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l---~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~-  340 (398)
T PRK10747        266 QVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL---KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK-  340 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc---cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Confidence            345667777889999999999999995 5566666666654   34899999999999999999999999999999999 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 023753          256 HKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       256 ~Gd~deAi~~yekALeldPdD  276 (277)
                      .+++++|+++|+++++..|++
T Consensus       341 ~~~~~~A~~~le~al~~~P~~  361 (398)
T PRK10747        341 HGEWQEASLAFRAALKQRPDA  361 (398)
T ss_pred             CCCHHHHHHHHHHHHhcCCCH
Confidence            999999999999999999985

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=1.4e-06  Score=85.27  Aligned_cols=92  Identities=20%  Similarity=0.171  Sum_probs=82.9

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753          182 YSNNNHGSSSTDAYYEKMIEANPGNA----LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (277)
Q Consensus       182 m~e~~Gd~deAi~~yekALeldP~n~----~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G  257 (277)
                      ....+|.+.+|.++|..||.+||+|.    ..|.|.|.+.. ..|+..+|+.-++.|+++||....++..-|.|+.. .+
T Consensus       258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~-rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~-le  335 (486)
T KOG0550|consen  258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI-RLGRLREAISDCNEALKIDSSYIKALLRRANCHLA-LE  335 (486)
T ss_pred             hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc-ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH-HH
Confidence            34457899999999999999999974    56778888886 89999999999999999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHhCCC
Q 023753          258 DASRAESYFDQAVKSAPD  275 (277)
Q Consensus       258 d~deAi~~yekALeldPd  275 (277)
                      ++++|++.|++|+++.-+
T Consensus       336 ~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  336 KWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHhhccc
Confidence            999999999999987643

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.34  E-value=7.1e-06  Score=86.79  Aligned_cols=104  Identities=14%  Similarity=0.078  Sum_probs=94.1

Q ss_pred             CCCcchhhHH---HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 023753          171 GGSGFSGSNN---NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSL  247 (277)
Q Consensus       171 g~~~~~~yY~---~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~  247 (277)
                      .++.+..++.   ..+...|++.+|++.+++.+...|.|+.++..+|.++. ..|++.+|++.+++++.++|++..+...
T Consensus       411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~-~Rg~p~~A~~~~k~a~~l~P~~~~~~~~  489 (822)
T PRK14574        411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYL-ARDLPRKAEQELKAVESLAPRSLILERA  489 (822)
T ss_pred             CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence            3555665544   33445699999999999999999999999999999997 8999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          248 YADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       248 LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +|.++.. ++++++|....+.+++..|++
T Consensus       490 ~~~~al~-l~e~~~A~~~~~~l~~~~Pe~  517 (822)
T PRK14574        490 QAETAMA-LQEWHQMELLTDDVISRSPED  517 (822)
T ss_pred             HHHHHHh-hhhHHHHHHHHHHHHhhCCCc
Confidence            9999999 999999999999999999987

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.33  E-value=5.4e-06  Score=81.06  Aligned_cols=92  Identities=23%  Similarity=0.301  Sum_probs=65.4

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      .++...++++.|+..|++..+.+|+   +...+|.++. ..++..+|++.+.++++.+|.+...+...|.+++. .++++
T Consensus       177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~  251 (395)
T PF09295_consen  177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYL-LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYE  251 (395)
T ss_pred             HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHH
Confidence            3444567778788877777777765   3344566665 46667777777777777777777777777777777 77777


Q ss_pred             HHHHHHHHHHHhCCCCC
Q 023753          261 RAESYFDQAVKSAPDDW  277 (277)
Q Consensus       261 eAi~~yekALeldPdD~  277 (277)
                      .|+.+.++|+++.|+++
T Consensus       252 lAL~iAk~av~lsP~~f  268 (395)
T PF09295_consen  252 LALEIAKKAVELSPSEF  268 (395)
T ss_pred             HHHHHHHHHHHhCchhH
Confidence            77777777777777753

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.32  E-value=1e-06  Score=87.25  Aligned_cols=94  Identities=15%  Similarity=0.122  Sum_probs=86.9

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 023753          182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR  261 (277)
Q Consensus       182 m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de  261 (277)
                      ....+|++++|.+.|+.||..|..-..+++|+|..+. ..+++++|+++|-+.-.+--+++++++.+|.+|-. +.+..+
T Consensus       499 ~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e-~~~~ldeald~f~klh~il~nn~evl~qianiye~-led~aq  576 (840)
T KOG2003|consen  499 IAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAE-ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL-LEDPAQ  576 (840)
T ss_pred             eeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHH-HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhCHHH
Confidence            3445789999999999999999999999999998885 89999999999999988888999999999999988 999999


Q ss_pred             HHHHHHHHHHhCCCCC
Q 023753          262 AESYFDQAVKSAPDDW  277 (277)
Q Consensus       262 Ai~~yekALeldPdD~  277 (277)
                      |+++|-++..+-|+|+
T Consensus       577 aie~~~q~~slip~dp  592 (840)
T KOG2003|consen  577 AIELLMQANSLIPNDP  592 (840)
T ss_pred             HHHHHHHhcccCCCCH
Confidence            9999999999999874

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.32  E-value=1.6e-06  Score=89.13  Aligned_cols=95  Identities=17%  Similarity=0.101  Sum_probs=87.7

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ..+..+++|.+|..+++..++++|-....|+++|.+.. +.+++..|.++|.+++.++|++..+|++++..|.. .++-.
T Consensus       493 ~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~AL-qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-~~~k~  570 (777)
T KOG1128|consen  493 LLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAAL-QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-LKKKK  570 (777)
T ss_pred             cccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHH-HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-HhhhH
Confidence            33445689999999999999999999999999998886 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCC
Q 023753          261 RAESYFDQAVKSAPDDW  277 (277)
Q Consensus       261 eAi~~yekALeldPdD~  277 (277)
                      +|-..+++|++.+-.+|
T Consensus       571 ra~~~l~EAlKcn~~~w  587 (777)
T KOG1128|consen  571 RAFRKLKEALKCNYQHW  587 (777)
T ss_pred             HHHHHHHHHhhcCCCCC
Confidence            99999999999987665

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=1.6e-06  Score=79.81  Aligned_cols=85  Identities=20%  Similarity=0.156  Sum_probs=80.1

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY  265 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~  265 (277)
                      ...|+.|+.+|-+||.++|..+.++.|-|.++. +.++++.+.+-+++|++++|+-..+++.+|.++.+ ...|++|+..
T Consensus        23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchl-k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~-s~~~~eaI~~  100 (284)
T KOG4642|consen   23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHL-KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-SKGYDEAIKV  100 (284)
T ss_pred             hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHH-HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-hccccHHHHH
Confidence            467889999999999999999999999999886 79999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHh
Q 023753          266 FDQAVKS  272 (277)
Q Consensus       266 yekALel  272 (277)
                      +.+|..+
T Consensus       101 Lqra~sl  107 (284)
T KOG4642|consen  101 LQRAYSL  107 (284)
T ss_pred             HHHHHHH
Confidence            9999654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.25  E-value=9.9e-06  Score=84.90  Aligned_cols=95  Identities=21%  Similarity=0.203  Sum_probs=89.1

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      .+..|+.+|+.++|...+-.|-.++|.+...|..++.... .++++.+|.-||.+||..+|.+-...+..+.+|.+ +|+
T Consensus       179 L~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~-~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~-~G~  256 (895)
T KOG2076|consen  179 LGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE-QLGNINQARYCYSRAIQANPSNWELIYERSSLYQK-TGD  256 (895)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-hCh
Confidence            3478888899999999999999999999999999999775 89999999999999999999999999999999988 999


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 023753          259 ASRAESYFDQAVKSAPD  275 (277)
Q Consensus       259 ~deAi~~yekALeldPd  275 (277)
                      ..+|...|.+++++.|.
T Consensus       257 ~~~Am~~f~~l~~~~p~  273 (895)
T KOG2076|consen  257 LKRAMETFLQLLQLDPP  273 (895)
T ss_pred             HHHHHHHHHHHHhhCCc
Confidence            99999999999999983

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.25  E-value=4.5e-06  Score=88.03  Aligned_cols=94  Identities=15%  Similarity=0.233  Sum_probs=51.8

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK--  257 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n-~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G--  257 (277)
                      +++.++|+|++|..||.++++.+|++ ...++.+|.++. ..++++.|+.+|++.++..|++...+..+|.+|.. .+  
T Consensus       315 Rs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i-~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~-~~~~  392 (1018)
T KOG2002|consen  315 RSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI-KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAH-SAKK  392 (1018)
T ss_pred             HHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH-HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHh-hhhh
Confidence            45555555555555555555555555 445555555553 55555555555555555555555555555555544 21  


Q ss_pred             --CHHHHHHHHHHHHHhCCCC
Q 023753          258 --DASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       258 --d~deAi~~yekALeldPdD  276 (277)
                        ..++|..++.++++..|.|
T Consensus       393 ~~~~d~a~~~l~K~~~~~~~d  413 (1018)
T KOG2002|consen  393 QEKRDKASNVLGKVLEQTPVD  413 (1018)
T ss_pred             hHHHHHHHHHHHHHHhccccc
Confidence              3355555555555555543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.24  E-value=1.1e-05  Score=78.83  Aligned_cols=87  Identities=18%  Similarity=0.150  Sum_probs=78.3

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      +++...++..+|+..+.++|+.+|.++..+...|.+|. ..++++.|+.++++|+.+.|++...|+.||.+|.. .|+++
T Consensus       208 ~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl-~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~-~~d~e  285 (395)
T PF09295_consen  208 RVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL-SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ-LGDFE  285 (395)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-cCCHH
Confidence            34444566679999999999999999999999999997 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHH
Q 023753          261 RAESYFDQA  269 (277)
Q Consensus       261 eAi~~yekA  269 (277)
                      +|+..++.+
T Consensus       286 ~ALlaLNs~  294 (395)
T PF09295_consen  286 NALLALNSC  294 (395)
T ss_pred             HHHHHHhcC
Confidence            999877643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.22  E-value=2.2e-05  Score=71.67  Aligned_cols=100  Identities=16%  Similarity=0.070  Sum_probs=79.5

Q ss_pred             chhhHHHHHH--hCCCcHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 023753          175 FSGSNNNYSN--NNHGSSSTDAYYEKMIEANPGNALLL---GNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILS  246 (277)
Q Consensus       175 ~~~yY~~m~e--~~Gd~deAi~~yekALeldP~n~~al---~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~  246 (277)
                      ....|.....  ..+++++|+..|++++...|..+.+.   +.+|.+++ ..+++++|+.+|++.++..|++   +.+++
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy-~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            3445553333  35999999999999999999987654   88999998 8999999999999999999976   45677


Q ss_pred             HHHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCC
Q 023753          247 LYADLIWQAHK---------------D---ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       247 ~LA~ll~~~~G---------------d---~deAi~~yekALeldPdD  276 (277)
                      .+|.++.. .+               |   ..+|+..|++.|+..|+.
T Consensus       111 ~~g~~~~~-~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S  157 (243)
T PRK10866        111 MRGLTNMA-LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS  157 (243)
T ss_pred             HHHHhhhh-cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC
Confidence            88876533 22               2   357889999999999974

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.20  E-value=3.2e-05  Score=64.20  Aligned_cols=89  Identities=17%  Similarity=0.164  Sum_probs=75.8

Q ss_pred             hHHHHHHh--CCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 023753          178 SNNNYSNN--NHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYA  249 (277)
Q Consensus       178 yY~~m~e~--~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA  249 (277)
                      .|..++..  .++...+...+++.+..+|+.   ..+.+.+|.+++ ..|++++|+..|++++...|++   +.+...+|
T Consensus        14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~-~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAY-EQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            34444443  588889999999999999999   467778899887 7899999999999999988765   45788899


Q ss_pred             HHHHHHcCCHHHHHHHHHH
Q 023753          250 DLIWQAHKDASRAESYFDQ  268 (277)
Q Consensus       250 ~ll~~~~Gd~deAi~~yek  268 (277)
                      .+++. .+++++|+..++.
T Consensus        93 ~~~~~-~~~~d~Al~~L~~  110 (145)
T PF09976_consen   93 RILLQ-QGQYDEALATLQQ  110 (145)
T ss_pred             HHHHH-cCCHHHHHHHHHh
Confidence            99999 9999999999976

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.19  E-value=6.5e-06  Score=82.86  Aligned_cols=94  Identities=24%  Similarity=0.274  Sum_probs=79.1

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCC
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--------PSD  241 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALel--------dP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld--------P~n  241 (277)
                      -+..+|...+.+.+|+..|++|+.+        +|.-+.++.+||.+|. ..|+|++|..||++|++|-        |.-
T Consensus       246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v  324 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY-KQGKFAEAEEYCERALEIYEKLLGASHPEV  324 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence            3566777889999999999999987        3444678999999997 8999999999999999873        233


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753          242 GNILSLYADLIWQAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       242 ~~al~~LA~ll~~~~Gd~deAi~~yekALeld  273 (277)
                      +..+.+++.++.. ++++++|+.+|++++++.
T Consensus       325 ~~~l~~~~~~~~~-~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  325 AAQLSELAAILQS-MNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             HHHHHHHHHHHHH-hcchhHHHHHHHHHHHHH
Confidence            4557788888888 999999999999999863

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.18  E-value=6.3e-06  Score=81.53  Aligned_cols=60  Identities=18%  Similarity=0.027  Sum_probs=54.1

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALL---LGNYARFLKEVRGDFAKAEELCGRAILAN  238 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~a---l~nLA~lL~e~~Gd~eeA~e~~ekALeld  238 (277)
                      .++.++...++|++|+.+|++||+++|+++.+   |+|+|.+|. .+|++++|+++|++|+++.
T Consensus        80 NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya-~LGr~dEAla~LrrALels  142 (453)
T PLN03098         80 NLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHA-YREEGKKAADCLRTALRDY  142 (453)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhc
Confidence            34467778899999999999999999999854   999999997 8999999999999999983

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=1.1e-05  Score=78.47  Aligned_cols=87  Identities=14%  Similarity=0.162  Sum_probs=75.6

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF  266 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~y  266 (277)
                      +++.+|+.++.++|+++|+|.-++|..|.++. ..++|+.|+..|++|++++|+|..+...+..+........++..+.|
T Consensus       271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l-~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y  349 (397)
T KOG0543|consen  271 KEYKEAIESCNKVLELDPNNVKALYRRGQALL-ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMY  349 (397)
T ss_pred             hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46779999999999999999999999999997 79999999999999999999999999999888777333444568889


Q ss_pred             HHHHHhCC
Q 023753          267 DQAVKSAP  274 (277)
Q Consensus       267 ekALeldP  274 (277)
                      .+++..-+
T Consensus       350 ~~mF~k~~  357 (397)
T KOG0543|consen  350 ANMFAKLA  357 (397)
T ss_pred             HHHhhccc
Confidence            88886544

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.16  E-value=2.5e-05  Score=66.56  Aligned_cols=99  Identities=15%  Similarity=0.121  Sum_probs=83.4

Q ss_pred             hhhHHHHHH--hCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 023753          176 SGSNNNYSN--NNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSL  247 (277)
Q Consensus       176 ~~yY~~m~e--~~Gd~deAi~~yekALeldP~n~---~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~---~al~~  247 (277)
                      ...|.....  ..++|.+|++.|+......|..+   .+...++.+++ ..+++++|+..+++-|+++|+++   .+++.
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            345554443  35999999999999999998764   67888999998 89999999999999999999864   46888


Q ss_pred             HHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCC
Q 023753          248 YADLIWQAHKD---------------ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       248 LA~ll~~~~Gd---------------~deAi~~yekALeldPdD  276 (277)
                      .|.+++. +.+               ..+|...|++.|+..|+.
T Consensus        90 ~gL~~~~-~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen   90 RGLSYYE-QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             HHHHHHH-HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence            8888888 665               789999999999999985

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.15  E-value=4.9e-06  Score=56.17  Aligned_cols=43  Identities=26%  Similarity=0.238  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023753          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (277)
Q Consensus       207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~  250 (277)
                      |.++..+|.+|. ..|++++|+++|+++++.+|+|+.++..+|.
T Consensus         1 p~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            457889999886 8999999999999999999999999998875

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.15  E-value=2e-06  Score=55.66  Aligned_cols=32  Identities=41%  Similarity=0.577  Sum_probs=16.7

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 023753          196 YEKMIEANPGNALLLGNYARFLKEVRGDFAKAE  228 (277)
Q Consensus       196 yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~  228 (277)
                      |++||+++|+|+.+|++||.+|. ..|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~-~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYL-NQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHH-HCcCHHhhc
Confidence            45555555555555555555554 455555543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.15  E-value=2.1e-06  Score=55.58  Aligned_cols=34  Identities=24%  Similarity=0.265  Sum_probs=31.9

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 023753          230 LCGRAILANPSDGNILSLYADLIWQAHKDASRAES  264 (277)
Q Consensus       230 ~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~  264 (277)
                      +|++||+++|+|+.+|++||.+|.. .|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLN-QGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhcC
Confidence            4899999999999999999999999 999999973

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=1.2e-05  Score=78.97  Aligned_cols=84  Identities=18%  Similarity=0.327  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023753          190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA  269 (277)
Q Consensus       190 deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekA  269 (277)
                      ++|.+.|+++|.++|....+...+|.++. ..|.+..++..+++++...|++ ..+..||.++.. .+.+++|..+|..|
T Consensus       421 EKAKkf~ek~L~~~P~Y~~AV~~~AEL~~-~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A-~Ne~Q~am~~y~~A  497 (564)
T KOG1174|consen  421 EKAKKFAEKSLKINPIYTPAVNLIAELCQ-VEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRA-QNEPQKAMEYYYKA  497 (564)
T ss_pred             HHHHHHHHhhhccCCccHHHHHHHHHHHH-hhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHH-hhhHHHHHHHHHHH
Confidence            68999999999999999999999999886 8999999999999999998866 568889999988 99999999999999


Q ss_pred             HHhCCCC
Q 023753          270 VKSAPDD  276 (277)
Q Consensus       270 LeldPdD  276 (277)
                      +.++|+|
T Consensus       498 Lr~dP~~  504 (564)
T KOG1174|consen  498 LRQDPKS  504 (564)
T ss_pred             HhcCccc
Confidence            9999987

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.12  E-value=1.4e-05  Score=85.07  Aligned_cols=79  Identities=18%  Similarity=0.127  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023753          191 STDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAV  270 (277)
Q Consensus       191 eAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekAL  270 (277)
                      .++.+|.+.+...+++-.|++.+|.+|. ..|++++|.+.|+++++++|+|+.++++||..|.. . ++++|+.++.+|+
T Consensus       100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Yd-k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-~-dL~KA~~m~~KAV  176 (906)
T PRK14720        100 AIVEHICDKILLYGENKLALRTLAEAYA-KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-E-DKEKAITYLKKAI  176 (906)
T ss_pred             hHHHHHHHHHHhhhhhhHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h-hHHHHHHHHHHHH
Confidence            5666666666667777777777777764 67777777777777777777777777777777776 5 7777777777777


Q ss_pred             Hh
Q 023753          271 KS  272 (277)
Q Consensus       271 el  272 (277)
                      +.
T Consensus       177 ~~  178 (906)
T PRK14720        177 YR  178 (906)
T ss_pred             HH
Confidence            64

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.11  E-value=1.3e-05  Score=85.16  Aligned_cols=82  Identities=17%  Similarity=0.206  Sum_probs=73.2

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      +...|...+++++|.+.|+++|++||+|+.++++||.+|. .. ++++|++++.+|+..              +++ .++
T Consensus       122 LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a-e~-dL~KA~~m~~KAV~~--------------~i~-~kq  184 (906)
T PRK14720        122 LAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE-EE-DKEKAITYLKKAIYR--------------FIK-KKQ  184 (906)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH-Hh-hHHHHHHHHHHHHHH--------------HHh-hhc
Confidence            3356667799999999999999999999999999999997 45 999999999999998              566 679


Q ss_pred             HHHHHHHHHHHHHhCCCCC
Q 023753          259 ASRAESYFDQAVKSAPDDW  277 (277)
Q Consensus       259 ~deAi~~yekALeldPdD~  277 (277)
                      |.++.+++.+.+..+|+|+
T Consensus       185 ~~~~~e~W~k~~~~~~~d~  203 (906)
T PRK14720        185 YVGIEEIWSKLVHYNSDDF  203 (906)
T ss_pred             chHHHHHHHHHHhcCcccc
Confidence            9999999999999999874

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.11  E-value=3.4e-05  Score=65.91  Aligned_cols=88  Identities=15%  Similarity=0.108  Sum_probs=76.9

Q ss_pred             HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCC
Q 023753          183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD----GNILSLYADLIWQAHKD  258 (277)
Q Consensus       183 ~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n----~~al~~LA~ll~~~~Gd  258 (277)
                      +...++++.|++.|.++|.+-|.++.+|+|.|..+. .+++.++|+.-+++|+++.-..    ..++..-|.+|.. +|+
T Consensus        53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl-~g~  130 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL-LGN  130 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-hCc
Confidence            334589999999999999999999999999999997 7999999999999999997543    4456677888887 999


Q ss_pred             HHHHHHHHHHHHHh
Q 023753          259 ASRAESYFDQAVKS  272 (277)
Q Consensus       259 ~deAi~~yekALel  272 (277)
                      .+.|..-|+.|-++
T Consensus       131 dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  131 DDAARADFEAAAQL  144 (175)
T ss_pred             hHHHHHhHHHHHHh
Confidence            99999999988765

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.09  E-value=2.2e-05  Score=75.12  Aligned_cols=100  Identities=12%  Similarity=0.078  Sum_probs=85.5

Q ss_pred             chhhHHHHHHhCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023753          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA  249 (277)
Q Consensus       175 ~~~yY~~m~e~~Gd~deAi~~yekALeldP~n~-----~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA  249 (277)
                      .....-.+|....++++|++..++...+.+...     .++..||..+. ...+.++|...+.+|++.||++..+-..+|
T Consensus       143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~-~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG  221 (389)
T COG2956         143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL-ASSDVDRARELLKKALQADKKCVRASIILG  221 (389)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhCccceehhhhhh
Confidence            455666888889999999999999999988763     44556666554 567899999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          250 DLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       250 ~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      .++.. .|+|++|++.++++++.||+.
T Consensus       222 ~v~~~-~g~y~~AV~~~e~v~eQn~~y  247 (389)
T COG2956         222 RVELA-KGDYQKAVEALERVLEQNPEY  247 (389)
T ss_pred             HHHHh-ccchHHHHHHHHHHHHhChHH
Confidence            99999 999999999999999999863

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.08  E-value=5.2e-06  Score=79.68  Aligned_cols=91  Identities=10%  Similarity=0.030  Sum_probs=72.3

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      .+++..+++++|.++|+.+++++|.|.+++..+|.-|+ ..++.+-|+.||++.+.+--.+++.+.++|.|++. .+++|
T Consensus       298 Ri~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf-Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y-aqQ~D  375 (478)
T KOG1129|consen  298 RIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYF-YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY-AQQID  375 (478)
T ss_pred             HHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccc-cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh-hcchh
Confidence            56666778888888888888888888888777776665 57788888888888888888888888888888877 78888


Q ss_pred             HHHHHHHHHHHhC
Q 023753          261 RAESYFDQAVKSA  273 (277)
Q Consensus       261 eAi~~yekALeld  273 (277)
                      -++..|++|+...
T Consensus       376 ~~L~sf~RAlsta  388 (478)
T KOG1129|consen  376 LVLPSFQRALSTA  388 (478)
T ss_pred             hhHHHHHHHHhhc
Confidence            8888888887654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.08  E-value=1.5e-05  Score=84.20  Aligned_cols=88  Identities=15%  Similarity=0.218  Sum_probs=44.8

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAE  263 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi  263 (277)
                      ..+..|...+.+|...+|.||.++..+|..++ ..++|..+...+..|+...-..   +..++.+|..+.. +|+|++|.
T Consensus       250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fy-fK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha-~Gd~ekA~  327 (1018)
T KOG2002|consen  250 DSYKKGVQLLQRAYKENNENPVALNHLANHFY-FKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA-QGDFEKAF  327 (1018)
T ss_pred             HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHh-hcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh-hccHHHHH
Confidence            34455666666666666666665555555444 3455555555555554443222   2224445555544 55555555


Q ss_pred             HHHHHHHHhCCCC
Q 023753          264 SYFDQAVKSAPDD  276 (277)
Q Consensus       264 ~~yekALeldPdD  276 (277)
                      .||.++++.+|++
T Consensus       328 ~yY~~s~k~~~d~  340 (1018)
T KOG2002|consen  328 KYYMESLKADNDN  340 (1018)
T ss_pred             HHHHHHHccCCCC
Confidence            5555555555443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=2.2e-05  Score=79.17  Aligned_cols=90  Identities=18%  Similarity=0.119  Sum_probs=60.1

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 023753          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAES  264 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~  264 (277)
                      .-+.+.+|..+|-||..+||....+|..+|..+. ..+..++|+.+|.+|.++-|....-...+|.-|.. .+.++.|..
T Consensus       324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa-~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~-t~n~kLAe~  401 (611)
T KOG1173|consen  324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA-GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR-TNNLKLAEK  401 (611)
T ss_pred             HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh-hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-hccHHHHHH
Confidence            4578889999999999999999999998888765 55555555555555555555554444555555544 555555555


Q ss_pred             HHHHHHHhCCCC
Q 023753          265 YFDQAVKSAPDD  276 (277)
Q Consensus       265 ~yekALeldPdD  276 (277)
                      +|.+|+.++|+|
T Consensus       402 Ff~~A~ai~P~D  413 (611)
T KOG1173|consen  402 FFKQALAIAPSD  413 (611)
T ss_pred             HHHHHHhcCCCc
Confidence            555555555554

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.05  E-value=1.5e-05  Score=84.54  Aligned_cols=91  Identities=19%  Similarity=0.100  Sum_probs=80.8

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHH
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ--AHKDASRAE  263 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~--~~Gd~deAi  263 (277)
                      +.+|++|++..+++++.||+|..++..+|.+++...++.++|.++|..|++++|++.-+|-.|+.+|..  ..-+++++-
T Consensus        15 nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~~~   94 (1238)
T KOG1127|consen   15 NKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDRAA   94 (1238)
T ss_pred             hccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhHhH
Confidence            579999999999999999999999999999998544459999999999999999999999999998865  234678999


Q ss_pred             HHHHHHHHhCCCC
Q 023753          264 SYFDQAVKSAPDD  276 (277)
Q Consensus       264 ~~yekALeldPdD  276 (277)
                      .+|++++-+.|++
T Consensus        95 ~~yq~~~l~le~q  107 (1238)
T KOG1127|consen   95 KCYQRAVLILENQ  107 (1238)
T ss_pred             HHHHHHHHhhhhh
Confidence            9999999887763

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.02  E-value=7.7e-05  Score=65.74  Aligned_cols=92  Identities=17%  Similarity=0.199  Sum_probs=72.9

Q ss_pred             HhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHc-
Q 023753          184 NNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLYADLIWQAH-  256 (277)
Q Consensus       184 e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~---~al~~LA~ll~~~~-  256 (277)
                      ...|++.+|+..|++++...|..   +.+++.+|.+++ ..+++++|+..|++.++..|+.+   .+++.+|.+++... 
T Consensus        16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y-~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~   94 (203)
T PF13525_consen   16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY-KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIP   94 (203)
T ss_dssp             HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCc
Confidence            35699999999999999999886   478899999998 89999999999999999999864   57888888876621 


Q ss_pred             ---------CCHHHHHHHHHHHHHhCCCC
Q 023753          257 ---------KDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       257 ---------Gd~deAi~~yekALeldPdD  276 (277)
                               ....+|+..|+..|+..|+.
T Consensus        95 ~~~~~~~D~~~~~~A~~~~~~li~~yP~S  123 (203)
T PF13525_consen   95 GILRSDRDQTSTRKAIEEFEELIKRYPNS  123 (203)
T ss_dssp             HHH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred             cchhcccChHHHHHHHHHHHHHHHHCcCc
Confidence                     22358999999999999985

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.99  E-value=5.7e-05  Score=69.99  Aligned_cols=70  Identities=20%  Similarity=0.125  Sum_probs=61.5

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       206 n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +...++..|..+....++|++|+..|++.++..|++   +.+++.+|.+|+. .+++++|+.+|+++++..|++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s  213 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKS  213 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCC
Confidence            456667777655435799999999999999999998   5799999999999 999999999999999999985

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.99  E-value=4.7e-05  Score=72.89  Aligned_cols=90  Identities=16%  Similarity=0.194  Sum_probs=82.5

Q ss_pred             HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHH
Q 023753          184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-GNILSLYADLIWQAHKDASRA  262 (277)
Q Consensus       184 e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n-~~al~~LA~ll~~~~Gd~deA  262 (277)
                      ....+.++|+..+.||++.||++..+-..+|.+.. ..|+|++|++.++++++.||+. +.++..|..+|.+ .|+.++.
T Consensus       191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~-~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~-lg~~~~~  268 (389)
T COG2956         191 LASSDVDRARELLKKALQADKKCVRASIILGRVEL-AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ-LGKPAEG  268 (389)
T ss_pred             hhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHH-hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH-hCCHHHH
Confidence            34578999999999999999999999999999886 8999999999999999999985 6688889999999 9999999


Q ss_pred             HHHHHHHHHhCCC
Q 023753          263 ESYFDQAVKSAPD  275 (277)
Q Consensus       263 i~~yekALeldPd  275 (277)
                      +.++.++++.+++
T Consensus       269 ~~fL~~~~~~~~g  281 (389)
T COG2956         269 LNFLRRAMETNTG  281 (389)
T ss_pred             HHHHHHHHHccCC
Confidence            9999999998775

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.98  E-value=1.9e-05  Score=49.33  Aligned_cols=33  Identities=18%  Similarity=0.358  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       243 ~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      .+++.+|.+++. +|++++|+.+|+++++++|+|
T Consensus         2 ~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence            455556666665 666666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK15331 chaperone protein SicA; Provisional

Probab=97.97  E-value=3.3e-05  Score=67.31  Aligned_cols=75  Identities=13%  Similarity=-0.006  Sum_probs=67.5

Q ss_pred             HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Q 023753          201 EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW  277 (277)
Q Consensus       201 eldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD~  277 (277)
                      .+.++.-...+.+|.-++ ..|++++|+..|+-+...+|.|+.++..||.++.. +++|++|+..|..|..++++|+
T Consensus        31 gis~~~le~iY~~Ay~~y-~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp  105 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFY-NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDY  105 (165)
T ss_pred             CCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCC
Confidence            345555677888888777 79999999999999999999999999999999988 9999999999999999998874

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.95  E-value=1.5e-05  Score=58.89  Aligned_cols=59  Identities=20%  Similarity=0.206  Sum_probs=48.9

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhC----CCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEAN----PGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILA  237 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeld----P~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALel  237 (277)
                      .+..++...+++++|+.+|++|+++.    +++   +.+++++|.++. ..|++++|+++|++|+++
T Consensus        10 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen   10 NLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence            45577788999999999999999762    222   567899999997 899999999999999986

...

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=4.6e-05  Score=75.02  Aligned_cols=98  Identities=20%  Similarity=0.216  Sum_probs=86.0

Q ss_pred             hhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----------------------------------C
Q 023753          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR----------------------------------G  222 (277)
Q Consensus       177 ~yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~----------------------------------G  222 (277)
                      ....+.+...|++.+|+..|+++.-+||.+....-.||.++. ..                                  +
T Consensus       236 ~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~-~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K  314 (564)
T KOG1174|consen  236 MALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLG-QEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEK  314 (564)
T ss_pred             HHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHH-hccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhh
Confidence            344566667899999999999999999999988888887764 23                                  3


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          223 DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       223 d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ++..|+.+-+|+|..+|++..++...|.++.+ .++.++|+-.|+.|+.+.|-+
T Consensus       315 ~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~r  367 (564)
T KOG1174|consen  315 KFERALNFVEKCIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPYR  367 (564)
T ss_pred             hHHHHHHHHHHHhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchhh
Confidence            78889999999999999999999999999999 999999999999999998854

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.93  E-value=3.4e-05  Score=71.55  Aligned_cols=94  Identities=18%  Similarity=0.282  Sum_probs=64.6

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      .+.....+..+.|...|++|++..+-...+|..+|.+-+...++.+.|...|+++++.-|.+..+|..|..++.. .++.
T Consensus         8 m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~d~   86 (280)
T PF05843_consen    8 MRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LNDI   86 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-H
T ss_pred             HHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hCcH
Confidence            344555556778888888887655556777777777644235666668888888888888888888888877777 7888


Q ss_pred             HHHHHHHHHHHHhCC
Q 023753          260 SRAESYFDQAVKSAP  274 (277)
Q Consensus       260 deAi~~yekALeldP  274 (277)
                      +.|..+|++++..-|
T Consensus        87 ~~aR~lfer~i~~l~  101 (280)
T PF05843_consen   87 NNARALFERAISSLP  101 (280)
T ss_dssp             HHHHHHHHHHCCTSS
T ss_pred             HHHHHHHHHHHHhcC
Confidence            888888888876544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.92  E-value=2.1e-05  Score=72.05  Aligned_cols=94  Identities=11%  Similarity=0.080  Sum_probs=85.0

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 023753          182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR  261 (277)
Q Consensus       182 m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de  261 (277)
                      +|...|-.+-|...|.+++.++|+-+.+++-+|.++. ..++|+.|.+.|...+++||.+-.++.+-|..++- -|++.-
T Consensus        74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~-~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~L  151 (297)
T COG4785          74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYKL  151 (297)
T ss_pred             hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH-hcccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchHh
Confidence            3445567788999999999999999999999998776 79999999999999999999999999999988877 899999


Q ss_pred             HHHHHHHHHHhCCCCC
Q 023753          262 AESYFDQAVKSAPDDW  277 (277)
Q Consensus       262 Ai~~yekALeldPdD~  277 (277)
                      |.+-+.+--+.+|+|+
T Consensus       152 Aq~d~~~fYQ~D~~DP  167 (297)
T COG4785         152 AQDDLLAFYQDDPNDP  167 (297)
T ss_pred             hHHHHHHHHhcCCCCh
Confidence            9999999999999984

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.91  E-value=7.6e-05  Score=61.63  Aligned_cols=68  Identities=24%  Similarity=0.168  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      |.+++++|.++. ..|+.++|+.+|++|+......   ..++..+|..+.. .|++++|+..+++++...|++
T Consensus         1 ~~~~~~~A~a~d-~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~~   71 (120)
T PF12688_consen    1 PRALYELAWAHD-SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPDD   71 (120)
T ss_pred             CchHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCc
Confidence            357899999886 8999999999999999986654   5678899999999 999999999999999998874

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.91  E-value=7.8e-06  Score=80.99  Aligned_cols=89  Identities=20%  Similarity=0.151  Sum_probs=83.9

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY  265 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~  265 (277)
                      ...++.|+..|.|||+++|+++.++.+.+..+. +.++|-.|+.-+.+||+++|....+|+.-|.++.. .+++.+|...
T Consensus        17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~l-K~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~-l~~~~~A~~~   94 (476)
T KOG0376|consen   17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHL-KVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA-LGEFKKALLD   94 (476)
T ss_pred             cchHHHHHHHHHHHHhcCCcceeeechhhhhhe-eechhhhHHHHHHhhhhcCchhhheeeeccHHHHh-HHHHHHHHHH
Confidence            478999999999999999999999999987665 89999999999999999999999999999999988 9999999999


Q ss_pred             HHHHHHhCCCC
Q 023753          266 FDQAVKSAPDD  276 (277)
Q Consensus       266 yekALeldPdD  276 (277)
                      |++...+.|++
T Consensus        95 l~~~~~l~Pnd  105 (476)
T KOG0376|consen   95 LEKVKKLAPND  105 (476)
T ss_pred             HHHhhhcCcCc
Confidence            99999999987

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.90  E-value=3.4e-05  Score=78.79  Aligned_cols=88  Identities=10%  Similarity=-0.001  Sum_probs=54.0

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY  265 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~  265 (277)
                      .|+-++|..+.+.++..|+.....|.-+|.++. ..++|++|+.||+.|+.++|+|-..|..++.+..+ +++++-....
T Consensus        54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R-~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q-mRd~~~~~~t  131 (700)
T KOG1156|consen   54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR-SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ-MRDYEGYLET  131 (700)
T ss_pred             ccchHHHHHHHHHHhccCcccchhHHHHHHHHh-hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHhhhhHHHH
Confidence            355556666666666666666666666665554 55666666666666666666666666666666666 6666666665


Q ss_pred             HHHHHHhCCC
Q 023753          266 FDQAVKSAPD  275 (277)
Q Consensus       266 yekALeldPd  275 (277)
                      -.+.+++.|.
T Consensus       132 r~~LLql~~~  141 (700)
T KOG1156|consen  132 RNQLLQLRPS  141 (700)
T ss_pred             HHHHHHhhhh
Confidence            5566655554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.88  E-value=2.5e-05  Score=49.24  Aligned_cols=32  Identities=22%  Similarity=0.343  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       243 ~al~~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                      .+|+++|.++.. ++++++|+.+|++||+++|+
T Consensus         2 ~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQ-LGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcC
Confidence            344455555555 55555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.88  E-value=6.2e-05  Score=70.56  Aligned_cols=93  Identities=14%  Similarity=0.049  Sum_probs=39.6

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~G--d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      +++-..++++.|.+.++++-+.+.+...+...-|++.. ..|  .+.+|...|+......+..+..++.+|.+.+. +|+
T Consensus       139 qi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l-~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~  216 (290)
T PF04733_consen  139 QILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNL-ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGH  216 (290)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHH-HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCC
Confidence            34444455555555555555444444333333333322 222  24444444444444334444444444444444 444


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 023753          259 ASRAESYFDQAVKSAPD  275 (277)
Q Consensus       259 ~deAi~~yekALeldPd  275 (277)
                      +++|+..+++|++.+|+
T Consensus       217 ~~eAe~~L~~al~~~~~  233 (290)
T PF04733_consen  217 YEEAEELLEEALEKDPN  233 (290)
T ss_dssp             HHHHHHHHHHHCCC-CC
T ss_pred             HHHHHHHHHHHHHhccC
Confidence            44444444444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.85  E-value=4.2e-05  Score=47.69  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD  241 (277)
Q Consensus       207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n  241 (277)
                      +.+|+.+|.+++ ..+++++|+++|++|++++|+|
T Consensus         1 a~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence            468999999997 8999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.84  E-value=9.2e-05  Score=76.86  Aligned_cols=86  Identities=16%  Similarity=0.164  Sum_probs=79.5

Q ss_pred             cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023753          189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-SDGNILSLYADLIWQAHKDASRAESYFD  267 (277)
Q Consensus       189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP-~n~~al~~LA~ll~~~~Gd~deAi~~ye  267 (277)
                      ..++++.+++|++++|+|+.+.+.++..|. ..++.+.|.++.++++++++ +++.+|..+|.++-. .+++.+|+...+
T Consensus       460 h~kslqale~av~~d~~dp~~if~lalq~A-~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa-~kr~~~Al~vvd  537 (799)
T KOG4162|consen  460 HKKSLQALEEAVQFDPTDPLVIFYLALQYA-EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSA-QKRLKEALDVVD  537 (799)
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHH-HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence            458999999999999999999999999887 68999999999999999955 678899999999988 999999999999


Q ss_pred             HHHHhCCCC
Q 023753          268 QAVKSAPDD  276 (277)
Q Consensus       268 kALeldPdD  276 (277)
                      .|++-.|+|
T Consensus       538 ~al~E~~~N  546 (799)
T KOG4162|consen  538 AALEEFGDN  546 (799)
T ss_pred             HHHHHhhhh
Confidence            999988875

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.83  E-value=6.3e-05  Score=76.91  Aligned_cols=93  Identities=11%  Similarity=0.047  Sum_probs=77.0

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      |+-++....+|++|+++|+.|+.++|+|..+|..++.+.. +.++|+-...--.+.+++.|.....|..+|..+.. .++
T Consensus        81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~-QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L-~g~  158 (700)
T KOG1156|consen   81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQI-QMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL-LGE  158 (700)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HHH
Confidence            3444555688999999999999999999999999887554 78899988888888999999998889888888888 899


Q ss_pred             HHHHHHHHHHHHHhC
Q 023753          259 ASRAESYFDQAVKSA  273 (277)
Q Consensus       259 ~deAi~~yekALeld  273 (277)
                      +..|...++...+..
T Consensus       159 y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  159 YKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999888877766544

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.83  E-value=3.5e-05  Score=48.55  Aligned_cols=34  Identities=26%  Similarity=0.270  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD  241 (277)
Q Consensus       207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n  241 (277)
                      +.+|+++|.++. ..+++++|+.+|++||+++|+|
T Consensus         1 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYF-QLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcCC
Confidence            468999999997 8999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.80  E-value=0.0002  Score=72.47  Aligned_cols=90  Identities=23%  Similarity=0.163  Sum_probs=82.0

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      .+.+...|++++|+.+.++||+..|..+..+...|.+|. ..|++.+|.++++.|-.+|+.|-..-.-.+..+++ .|+.
T Consensus       201 Aqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK-h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR-a~~~  278 (517)
T PF12569_consen  201 AQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK-HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR-AGRI  278 (517)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH-CCCH
Confidence            467778899999999999999999999999999999997 89999999999999999999999888888888888 9999


Q ss_pred             HHHHHHHHHHHH
Q 023753          260 SRAESYFDQAVK  271 (277)
Q Consensus       260 deAi~~yekALe  271 (277)
                      ++|++.+..-..
T Consensus       279 e~A~~~~~~Ftr  290 (517)
T PF12569_consen  279 EEAEKTASLFTR  290 (517)
T ss_pred             HHHHHHHHhhcC
Confidence            999998766543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.80  E-value=0.00048  Score=53.98  Aligned_cols=92  Identities=25%  Similarity=0.294  Sum_probs=71.5

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcC
Q 023753          182 YSNNNHGSSSTDAYYEKMIEANP---GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-DGNILSLYADLIWQAHK  257 (277)
Q Consensus       182 m~e~~Gd~deAi~~yekALeldP---~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~-n~~al~~LA~ll~~~~G  257 (277)
                      ++...++++.|..+|++++..+|   .....+..++..+. ..+++++|+..+.+++...+. ...++..++.++.. .+
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  216 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLE-ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-LG  216 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH-HhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-cc
Confidence            56677888888888888888777   34455555555544 577888888888888888888 68888888888887 78


Q ss_pred             CHHHHHHHHHHHHHhCCC
Q 023753          258 DASRAESYFDQAVKSAPD  275 (277)
Q Consensus       258 d~deAi~~yekALeldPd  275 (277)
                      ++++|+.++.+++...|.
T Consensus       217 ~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         217 KYEEALEYYEKALELDPD  234 (291)
T ss_pred             cHHHHHHHHHHHHhhCcc
Confidence            888888888888888774

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.78  E-value=0.0002  Score=65.31  Aligned_cols=70  Identities=11%  Similarity=0.001  Sum_probs=62.5

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNIL---SLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       205 ~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al---~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ..+..++..|.-+. ..|++++|++.|++++...|..+.+.   +.+|.+++. .+++++|+.+|++.++..|++
T Consensus        30 ~~~~~~Y~~A~~~~-~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~  102 (243)
T PRK10866         30 NPPSEIYATAQQKL-QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTH  102 (243)
T ss_pred             CCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCC
Confidence            35666777887776 68999999999999999999987765   889999999 999999999999999999987

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.76  E-value=4.7e-05  Score=80.94  Aligned_cols=89  Identities=17%  Similarity=0.080  Sum_probs=72.6

Q ss_pred             CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------------------------------HcCCHHHHHHHHH
Q 023753          188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKE-----------------------------------VRGDFAKAEELCG  232 (277)
Q Consensus       188 d~deAi~~yekALeldP~n~~al~nLA~lL~e-----------------------------------~~Gd~eeA~e~~e  232 (277)
                      |...|..+|++|.++||.++.++-..+..+.+                                   ..+++-.|+..|+
T Consensus       507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQ  586 (1238)
T KOG1127|consen  507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQ  586 (1238)
T ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHH
Confidence            66788899999999999888776666655431                                   1246777888899


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Q 023753          233 RAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW  277 (277)
Q Consensus       233 kALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD~  277 (277)
                      .|+..+|.|...|..+|.+|.. .|++..|++.|.+|..++|.+|
T Consensus       587 sALR~dPkD~n~W~gLGeAY~~-sGry~~AlKvF~kAs~LrP~s~  630 (1238)
T KOG1127|consen  587 SALRTDPKDYNLWLGLGEAYPE-SGRYSHALKVFTKASLLRPLSK  630 (1238)
T ss_pred             HHhcCCchhHHHHHHHHHHHHh-cCceehHHHhhhhhHhcCcHhH
Confidence            9999999999999999999988 8999999999999999999764

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=0.00018  Score=66.95  Aligned_cols=89  Identities=17%  Similarity=0.242  Sum_probs=78.1

Q ss_pred             hCCCcHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 023753          185 NNHGSSSTDAYYEKMIEA--------NPGNA----------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS  246 (277)
Q Consensus       185 ~~Gd~deAi~~yekALel--------dP~n~----------~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~  246 (277)
                      ..++|.+|...|+.||..        .|..+          ..+.||+.++. ..++|-++++++...+..+|.|..||+
T Consensus       190 k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL~~~~~nvKA~f  268 (329)
T KOG0545|consen  190 KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEILRHHPGNVKAYF  268 (329)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            458899999998888653        45554          46789999886 899999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          247 LYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       247 ~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                      .-|.+... ..+.++|.+-|.++|+++|.
T Consensus       269 rRakAhaa-~Wn~~eA~~D~~~vL~ldps  296 (329)
T KOG0545|consen  269 RRAKAHAA-VWNEAEAKADLQKVLELDPS  296 (329)
T ss_pred             HHHHHHHh-hcCHHHHHHHHHHHHhcChh
Confidence            99999988 89999999999999999985

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.69  E-value=7.3e-05  Score=71.97  Aligned_cols=93  Identities=11%  Similarity=0.002  Sum_probs=69.4

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      +-|...|-+.+|++.++.+|+..|. ++.+..++.+|. ...+.+.|+..|.+.++.-|.+...+...|.++.. +++++
T Consensus       231 kCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~-ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea-m~~~~  307 (478)
T KOG1129|consen  231 KCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQ-RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA-MEQQE  307 (478)
T ss_pred             HHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHH-HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH-HHhHH
Confidence            3455567777888888888877774 555556677775 67777788888888888888887777777777777 77788


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+++|+.+++++|.|
T Consensus       308 ~a~~lYk~vlk~~~~n  323 (478)
T KOG1129|consen  308 DALQLYKLVLKLHPIN  323 (478)
T ss_pred             HHHHHHHHHHhcCCcc
Confidence            8888888888777765

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=9.9e-05  Score=72.51  Aligned_cols=94  Identities=12%  Similarity=0.068  Sum_probs=81.3

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------------HHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI------------LSLY  248 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a------------l~~L  248 (277)
                      +.+...+++++|...--..+++|+.|..+++-.+.+++ ...+.++|+.+|+++|.++|+...+            +..-
T Consensus       177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~y-y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~  255 (486)
T KOG0550|consen  177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY-YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER  255 (486)
T ss_pred             hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccc-cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence            34445689999999999999999999999999999888 7899999999999999999986543            2333


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          249 ADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       249 A~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      |.-+++ .|+|.+|.++|..||.++|++
T Consensus       256 gN~~fk-~G~y~~A~E~Yteal~idP~n  282 (486)
T KOG0550|consen  256 GNDAFK-NGNYRKAYECYTEALNIDPSN  282 (486)
T ss_pred             hhhHhh-ccchhHHHHHHHHhhcCCccc
Confidence            666778 899999999999999999986

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.68  E-value=3.2e-05  Score=58.28  Aligned_cols=53  Identities=17%  Similarity=0.313  Sum_probs=45.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          221 RGDFAKAEELCGRAILANPS--DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       221 ~Gd~eeA~e~~ekALeldP~--n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                      +++++.|+.+|+++++.+|.  +..+++.+|.++++ .+++++|+.++++ ++.+|.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~   56 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPS   56 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHC
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCC
Confidence            58999999999999999995  56678889999999 9999999999988 655543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.65  E-value=0.00084  Score=55.23  Aligned_cols=85  Identities=18%  Similarity=0.199  Sum_probs=65.1

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 023753          185 NNHGSSSTDAYYEKMIEANPGNA----------------------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG  242 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP~n~----------------------~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~  242 (277)
                      ..++.+.++..+++|+.+-..+.                      .++..++..+. ..+++++|+.++++++.++|.+-
T Consensus        18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~l~~dP~~E   96 (146)
T PF03704_consen   18 RAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALL-EAGDYEEALRLLQRALALDPYDE   96 (146)
T ss_dssp             HTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCH
Confidence            35688889999999998853321                      13444444454 68999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753          243 NILSLYADLIWQAHKDASRAESYFDQAVK  271 (277)
Q Consensus       243 ~al~~LA~ll~~~~Gd~deAi~~yekALe  271 (277)
                      .++..+-.+|.. .|+..+|+.+|++..+
T Consensus        97 ~~~~~lm~~~~~-~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   97 EAYRLLMRALAA-QGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence            999999999999 9999999999998864

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.65  E-value=0.00018  Score=72.65  Aligned_cols=60  Identities=13%  Similarity=0.127  Sum_probs=54.7

Q ss_pred             HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023753          183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI  244 (277)
Q Consensus       183 ~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a  244 (277)
                      ....+++++|+.+|++|++++| +..+|..+|.++. ..|++++|+++|++|+.++|.++..
T Consensus       430 ~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~-~~G~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        430 ALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYE-LKGDNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCchH
Confidence            3356999999999999999999 5889999999886 8999999999999999999998864

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.59  E-value=0.00022  Score=63.20  Aligned_cols=63  Identities=16%  Similarity=0.117  Sum_probs=49.2

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-----------DFAKAEELCGRAILANPSDGNILSLYAD  250 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~G-----------d~eeA~e~~ekALeldP~n~~al~~LA~  250 (277)
                      .-+++|+.-|++||.++|+...++.++|.+|. ..+           .|++|..||++|+..+|+|..+...|-.
T Consensus        49 ~miedAisK~eeAL~I~P~~hdAlw~lGnA~t-s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~  122 (186)
T PF06552_consen   49 KMIEDAISKFEEALKINPNKHDALWCLGNAYT-SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM  122 (186)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            34678999999999999999999999999886 222           4889999999999999999877665543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.59  E-value=0.0015  Score=51.13  Aligned_cols=91  Identities=21%  Similarity=0.217  Sum_probs=81.7

Q ss_pred             HHhCCCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 023753          183 SNNNHGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR  261 (277)
Q Consensus       183 ~e~~Gd~deAi~~yekALeldP~-n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de  261 (277)
                      +...++++.|+..+.+++...+. ...++..++..+. ..+++++|..++.+++...|.....+..++..+.. .+++++
T Consensus       177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  254 (291)
T COG0457         177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL-KLGKYEEALEYYEKALELDPDNAEALYNLALLLLE-LGRYEE  254 (291)
T ss_pred             HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH-HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH-cCCHHH
Confidence            34457899999999999999999 6999999999886 78899999999999999999988888888888885 899999


Q ss_pred             HHHHHHHHHHhCCC
Q 023753          262 AESYFDQAVKSAPD  275 (277)
Q Consensus       262 Ai~~yekALeldPd  275 (277)
                      |...+.+++..+|.
T Consensus       255 ~~~~~~~~~~~~~~  268 (291)
T COG0457         255 ALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHHHhCcc
Confidence            99999999998874

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.56  E-value=0.00017  Score=74.61  Aligned_cols=87  Identities=11%  Similarity=0.025  Sum_probs=81.4

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 023753          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAES  264 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~  264 (277)
                      +.+++..|.++|.+++.++|++..+|+|++..|. +.++-.+|-..+.+|++.+-.+..+|-|+-.+..+ .+.+++|+.
T Consensus       531 qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi-~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd-vge~eda~~  608 (777)
T KOG1128|consen  531 QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI-RLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD-VGEFEDAIK  608 (777)
T ss_pred             HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH-HHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh-cccHHHHHH
Confidence            4578899999999999999999999999999886 89999999999999999998899999999999999 999999999


Q ss_pred             HHHHHHHhC
Q 023753          265 YFDQAVKSA  273 (277)
Q Consensus       265 ~yekALeld  273 (277)
                      .|.+.+.+.
T Consensus       609 A~~rll~~~  617 (777)
T KOG1128|consen  609 AYHRLLDLR  617 (777)
T ss_pred             HHHHHHHhh
Confidence            999998764

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.55  E-value=0.0002  Score=67.22  Aligned_cols=89  Identities=21%  Similarity=0.245  Sum_probs=75.4

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH-HHHHH
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA-SRAES  264 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~-deAi~  264 (277)
                      ...+.+|...|+...+..+.++..++.+|.+.. ..|+|++|++.+++|+..+|++++++.+++.+... .|+. +.+.+
T Consensus       180 ~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l-~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~-~gk~~~~~~~  257 (290)
T PF04733_consen  180 GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL-QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH-LGKPTEAAER  257 (290)
T ss_dssp             TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH-HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH-TT-TCHHHHH
T ss_pred             chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-hCCChhHHHH
Confidence            346889999999988888889999999998876 89999999999999999999999999999998888 7877 67888


Q ss_pred             HHHHHHHhCCCC
Q 023753          265 YFDQAVKSAPDD  276 (277)
Q Consensus       265 ~yekALeldPdD  276 (277)
                      ++.+....+|+.
T Consensus       258 ~l~qL~~~~p~h  269 (290)
T PF04733_consen  258 YLSQLKQSNPNH  269 (290)
T ss_dssp             HHHHCHHHTTTS
T ss_pred             HHHHHHHhCCCC
Confidence            999998899875

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.52  E-value=0.00085  Score=62.25  Aligned_cols=96  Identities=19%  Similarity=0.229  Sum_probs=78.2

Q ss_pred             HHHHHHh-CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Q 023753          179 NNNYSNN-NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLYADLIWQ  254 (277)
Q Consensus       179 Y~~m~e~-~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~---~al~~LA~ll~~  254 (277)
                      |..|... .++.+.|...|+++++..|.+..+|..|..++. ..++.+.|...|++++..-|...   .+|..+..+-..
T Consensus        41 ~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~-~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~  119 (280)
T PF05843_consen   41 YALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI-KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESK  119 (280)
T ss_dssp             HHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence            3444333 466667999999999999999999999999996 78999999999999999877765   567777777777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC
Q 023753          255 AHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       255 ~~Gd~deAi~~yekALeldPdD  276 (277)
                       .|+.+....+++++.+..|++
T Consensus       120 -~Gdl~~v~~v~~R~~~~~~~~  140 (280)
T PF05843_consen  120 -YGDLESVRKVEKRAEELFPED  140 (280)
T ss_dssp             -HS-HHHHHHHHHHHHHHTTTS
T ss_pred             -cCCHHHHHHHHHHHHHHhhhh
Confidence             899999999999999998864

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.51  E-value=0.00016  Score=48.69  Aligned_cols=38  Identities=5%  Similarity=0.066  Sum_probs=34.6

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYAR  215 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~  215 (277)
                      .+..++...|++++|+..|+++++.+|+|+.+|..||.
T Consensus         6 ~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    6 ALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            35678888999999999999999999999999999885

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.49  E-value=0.00047  Score=68.83  Aligned_cols=77  Identities=27%  Similarity=0.133  Sum_probs=58.5

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      -.++..|++++|+.+|-+.-.+--+++.+++.+|.+|. ...+..+|++.|.+|..+-|++|.++.-||.+|-+ .||-
T Consensus       532 lt~e~~~~ldeald~f~klh~il~nn~evl~qianiye-~led~aqaie~~~q~~slip~dp~ilskl~dlydq-egdk  608 (840)
T KOG2003|consen  532 LTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE-LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ-EGDK  608 (840)
T ss_pred             ccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc-ccch
Confidence            34556688888888888877777778888888887774 67788888888888888888888888877777665 6653

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.46  E-value=0.0012  Score=59.59  Aligned_cols=93  Identities=19%  Similarity=0.156  Sum_probs=78.0

Q ss_pred             HHHHhCCCcHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcC
Q 023753          181 NYSNNNHGSSSTDAYYEKMIE-ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYADLIWQAHK  257 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALe-ldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~--n~~al~~LA~ll~~~~G  257 (277)
                      ..+...|++.+|+.+|++++. +..+++..+..+++..+ ..+++..|...+++..+.+|.  .|+-+..+|.+|.. .|
T Consensus        97 ~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf-a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g  174 (251)
T COG4700          97 NALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF-AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-QG  174 (251)
T ss_pred             HHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH-hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh-cC
Confidence            344456888999999999987 67788888888998887 789999999999999999885  56677788888888 99


Q ss_pred             CHHHHHHHHHHHHHhCCC
Q 023753          258 DASRAESYFDQAVKSAPD  275 (277)
Q Consensus       258 d~deAi~~yekALeldPd  275 (277)
                      ++++|+..|+.|+...|+
T Consensus       175 ~~a~Aesafe~a~~~ypg  192 (251)
T COG4700         175 KYADAESAFEVAISYYPG  192 (251)
T ss_pred             CchhHHHHHHHHHHhCCC
Confidence            999999999999988875

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.42  E-value=4.8e-05  Score=73.06  Aligned_cols=107  Identities=17%  Similarity=0.070  Sum_probs=88.0

Q ss_pred             CCCCCCCcchhhHHHHHHh---------CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          167 GGGGGGSGFSGSNNNYSNN---------NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA  237 (277)
Q Consensus       167 ~g~~g~~~~~~yY~~m~e~---------~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel  237 (277)
                      .|+...+.++.-|.+.-+.         .|.+++|++.|.+||+++|..+..+...+.++. ..++..+|+.-|..|+++
T Consensus        99 MGds~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l-kl~kp~~airD~d~A~ei  177 (377)
T KOG1308|consen   99 MGDSNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFL-KLKKPNAAIRDCDFAIEI  177 (377)
T ss_pred             hchhhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceee-eccCCchhhhhhhhhhcc
Confidence            4455556665544433222         478999999999999999999999999999886 789999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          238 NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       238 dP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                      +|+.+.-|-.-+.+... ++++++|..+|..|.+++-+
T Consensus       178 n~Dsa~~ykfrg~A~rl-lg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  178 NPDSAKGYKFRGYAERL-LGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             CcccccccchhhHHHHH-hhchHHHHHHHHHHHhcccc
Confidence            99988777666766666 89999999999999988643

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.42  E-value=0.00066  Score=68.70  Aligned_cols=67  Identities=24%  Similarity=0.209  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       208 ~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ++++.+|..|. ..|++++|++++++||+..|..++.|...|.++-. .|++++|.++++.|-.+++.|
T Consensus       195 w~~~~lAqhyd-~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~D  261 (517)
T PF12569_consen  195 WTLYFLAQHYD-YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLAD  261 (517)
T ss_pred             HHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhh
Confidence            45677788775 79999999999999999999999999999999999 999999999999999999876

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.41  E-value=0.0014  Score=57.83  Aligned_cols=69  Identities=20%  Similarity=0.203  Sum_probs=57.5

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       206 n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      .+..++..|..++ ..|++.+|+..|++++...|..   +.+.+.+|.+++. .+++++|+..|++.++..|++
T Consensus         4 ~~~~lY~~a~~~~-~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~   75 (203)
T PF13525_consen    4 TAEALYQKALEAL-QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNS   75 (203)
T ss_dssp             -HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-
T ss_pred             CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCC
Confidence            4677888998886 7999999999999999998864   5678999999999 999999999999999999985

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.37  E-value=0.00034  Score=43.74  Aligned_cols=30  Identities=23%  Similarity=0.283  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753          244 ILSLYADLIWQAHKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       244 al~~LA~ll~~~~Gd~deAi~~yekALeldP  274 (277)
                      +++.+|.++.. +|++++|+.+|+++++++|
T Consensus         3 ~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQ-LGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHH-TTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC
Confidence            44555555555 5555555555555555555

...

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.35  E-value=0.0011  Score=68.58  Aligned_cols=94  Identities=17%  Similarity=0.108  Sum_probs=74.8

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      .+....++.++|+.+++++|+..|+....|..+|.++. .+++.+.|.+.|..-++.-|+.+..|..++.+--. .+..-
T Consensus       659 ~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e-~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk-~~~~~  736 (913)
T KOG0495|consen  659 NLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEE-QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK-DGQLV  736 (913)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHH-HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH-hcchh
Confidence            33344578889999999999999999999999998874 78888888888888888888887777777776666 67777


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|...++++.-.||.|
T Consensus       737 rAR~ildrarlkNPk~  752 (913)
T KOG0495|consen  737 RARSILDRARLKNPKN  752 (913)
T ss_pred             hHHHHHHHHHhcCCCc
Confidence            7777788777777775

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.35  E-value=0.00096  Score=61.59  Aligned_cols=96  Identities=15%  Similarity=0.069  Sum_probs=69.9

Q ss_pred             hHHHHHHhC-CCcHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CH---H
Q 023753          178 SNNNYSNNN-HGSSSTDAYYEKMIEANP--GN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS----DG---N  243 (277)
Q Consensus       178 yY~~m~e~~-Gd~deAi~~yekALeldP--~n----~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~----n~---~  243 (277)
                      -...+|+.. +++++|+++|++|+++.-  +.    ...+.++|.++. ..++|++|++.|++++...-+    ..   .
T Consensus       119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~-~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~  197 (282)
T PF14938_consen  119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA-RLGRYEEAIEIYEEVAKKCLENNLLKYSAKE  197 (282)
T ss_dssp             HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence            344677788 899999999999999732  22    346778888886 899999999999999885422    12   2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       244 al~~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                      .+.....|++. .+|+..|...|++....+|.
T Consensus       198 ~~l~a~l~~L~-~~D~v~A~~~~~~~~~~~~~  228 (282)
T PF14938_consen  198 YFLKAILCHLA-MGDYVAARKALERYCSQDPS  228 (282)
T ss_dssp             HHHHHHHHHHH-TT-HHHHHHHHHHHGTTSTT
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC
Confidence            33445556666 89999999999999998885

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.34  E-value=0.00063  Score=62.78  Aligned_cols=83  Identities=25%  Similarity=0.264  Sum_probs=46.0

Q ss_pred             CcHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHH
Q 023753          188 GSSSTDAYYEKMIEAN--PGN----ALLLGNYARFLKEVR-GDFAKAEELCGRAILANP--SD----GNILSLYADLIWQ  254 (277)
Q Consensus       188 d~deAi~~yekALeld--P~n----~~al~nLA~lL~e~~-Gd~eeA~e~~ekALeldP--~n----~~al~~LA~ll~~  254 (277)
                      ++++|+.+|++|+.+.  -++    +.++.++|.+|. .. +++++|+++|++|+++--  +.    ...+..+|.++..
T Consensus        89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye-~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~  167 (282)
T PF14938_consen   89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE-EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR  167 (282)
T ss_dssp             THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC-CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence            5666666666666652  222    345666666553 44 567777777777766521  11    2234556666666


Q ss_pred             HcCCHHHHHHHHHHHHHh
Q 023753          255 AHKDASRAESYFDQAVKS  272 (277)
Q Consensus       255 ~~Gd~deAi~~yekALel  272 (277)
                       .++|++|++.|+++...
T Consensus       168 -l~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  168 -LGRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             -TT-HHHHHHHHHHHHHT
T ss_pred             -hCCHHHHHHHHHHHHHH
Confidence             67777777777766553

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.34  E-value=0.0021  Score=62.83  Aligned_cols=83  Identities=23%  Similarity=0.190  Sum_probs=67.1

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF  266 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~y  266 (277)
                      ++...=++..++.++..|++|..+..+|.+++ +.+.+.+|..+|+.|++..|.. ..+..+|.++.+ .|+..+|.+.+
T Consensus       308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~-k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~-~g~~~~A~~~r  384 (400)
T COG3071         308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLAL-KNKLWGKASEALEAALKLRPSA-SDYAELADALDQ-LGEPEEAEQVR  384 (400)
T ss_pred             CCchHHHHHHHHHHHhCCCChhHHHHHHHHHH-HhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHH-cCChHHHHHHH
Confidence            45666777888888888888888888888876 7888889999999888887754 446678888888 88888888888


Q ss_pred             HHHHHh
Q 023753          267 DQAVKS  272 (277)
Q Consensus       267 ekALel  272 (277)
                      +.++.+
T Consensus       385 ~e~L~~  390 (400)
T COG3071         385 REALLL  390 (400)
T ss_pred             HHHHHH
Confidence            888754

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.001  Score=63.96  Aligned_cols=90  Identities=13%  Similarity=0.129  Sum_probs=77.3

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753          182 YSNNNHGSSSTDAYYEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (277)
Q Consensus       182 m~e~~Gd~deAi~~yekALeldP~n----~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G  257 (277)
                      -+....+|..|+..|.++|+..-.|    +..|.|.|.+.+ ..++|..|+.-+.+|+.++|.+.-+++.-|.|+++ +.
T Consensus        90 ~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~-~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e-Le  167 (390)
T KOG0551|consen   90 EYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL-YLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE-LE  167 (390)
T ss_pred             HHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH-HH
Confidence            3444568999999999999986555    456788887776 68999999999999999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHhC
Q 023753          258 DASRAESYFDQAVKSA  273 (277)
Q Consensus       258 d~deAi~~yekALeld  273 (277)
                      ++++|..+.+..++++
T Consensus       168 ~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  168 RFAEAVNWCEEGLQID  183 (390)
T ss_pred             HHHHHHHHHhhhhhhh
Confidence            9999999888877664

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.29  E-value=0.0022  Score=62.32  Aligned_cols=89  Identities=17%  Similarity=0.144  Sum_probs=84.7

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY  265 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~  265 (277)
                      .||...|+.+..+.|++.|=++..+...+.+|. ..++..+|+.-++.|-++..++.+.++-++.+++. .||.+.++..
T Consensus       168 ~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i-~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~-vgd~~~sL~~  245 (504)
T KOG0624|consen  168 SGDCQNAIEMITHLLEIQPWDASLRQARAKCYI-AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT-VGDAENSLKE  245 (504)
T ss_pred             CCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH-hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh-hhhHHHHHHH
Confidence            478899999999999999999999999999886 89999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHhCCCC
Q 023753          266 FDQAVKSAPDD  276 (277)
Q Consensus       266 yekALeldPdD  276 (277)
                      ++..|+++|+.
T Consensus       246 iRECLKldpdH  256 (504)
T KOG0624|consen  246 IRECLKLDPDH  256 (504)
T ss_pred             HHHHHccCcch
Confidence            99999999985

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.26  E-value=0.00055  Score=42.78  Aligned_cols=33  Identities=24%  Similarity=0.352  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD  241 (277)
Q Consensus       208 ~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n  241 (277)
                      .+|+.+|.++. ..+++++|+.+|+++++++|+|
T Consensus         2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYE-QLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC
Confidence            57899999987 8999999999999999999954

...

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.23  E-value=0.0034  Score=53.61  Aligned_cols=68  Identities=15%  Similarity=0.082  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +..++.-|.-.. ..++|.+|++.|+.+...-|..   ..+...++.+++. .+++++|+..+++-|+++|++
T Consensus        10 ~~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~h   80 (142)
T PF13512_consen   10 PQELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTH   80 (142)
T ss_pred             HHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCC
Confidence            566778887665 7899999999999999998864   5678899999999 999999999999999999986

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.17  E-value=0.00063  Score=65.25  Aligned_cols=65  Identities=15%  Similarity=0.276  Sum_probs=59.6

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023753          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~  250 (277)
                      ..|..++|...|+.|++++|.++.++..+|.+.. ..++..+|-+||-+|+.++|.|..++.+-+.
T Consensus       128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E-~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFRE-MHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH-hhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            3589999999999999999999999999999885 6799999999999999999999999887654

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.16  E-value=0.00092  Score=68.39  Aligned_cols=90  Identities=22%  Similarity=0.137  Sum_probs=81.2

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 023753          185 NNHGSSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE  263 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP~n~-~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi  263 (277)
                      ..|+...|++++++|+...|... ..+.++|.++. .-+-...|-.++.+++.++-..|..++.+|.+++. ..+.+.|+
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~-~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~-l~~i~~a~  696 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLI-HYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA-LKNISGAL  696 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHH-HhhhhccHHHHHHHHHhhcccCchHHHhcchhHHH-HhhhHHHH
Confidence            46788899999999999999765 44789999886 67778899999999999998899999999999999 99999999


Q ss_pred             HHHHHHHHhCCCC
Q 023753          264 SYFDQAVKSAPDD  276 (277)
Q Consensus       264 ~~yekALeldPdD  276 (277)
                      +.|++|+.++|++
T Consensus       697 ~~~~~a~~~~~~~  709 (886)
T KOG4507|consen  697 EAFRQALKLTTKC  709 (886)
T ss_pred             HHHHHHHhcCCCC
Confidence            9999999999986

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.11  E-value=0.0042  Score=62.54  Aligned_cols=86  Identities=14%  Similarity=0.282  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023753          190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA  269 (277)
Q Consensus       190 deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekA  269 (277)
                      .+-...|++|+...+.|...|.+|..+.. +.+.+.+-...|.+++...|++++.|..-|.-.+...-+.+.|.+.|.++
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~k-k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg  166 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCK-KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG  166 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence            46778999999999999999999998775 66779999999999999999999999999988888444599999999999


Q ss_pred             HHhCCCC
Q 023753          270 VKSAPDD  276 (277)
Q Consensus       270 LeldPdD  276 (277)
                      |+.+|+.
T Consensus       167 LR~npds  173 (568)
T KOG2396|consen  167 LRFNPDS  173 (568)
T ss_pred             hhcCCCC
Confidence            9999986

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.10  E-value=0.0029  Score=65.51  Aligned_cols=95  Identities=17%  Similarity=0.211  Sum_probs=87.7

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      +++++..++.+.|...|...++.-|+.+..|..++.+- +..+...+|...++++...||.|+..|...-.+-+. .|..
T Consensus       692 GQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle-Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR-~gn~  769 (913)
T KOG0495|consen  692 GQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE-EKDGQLVRARSILDRARLKNPKNALLWLESIRMELR-AGNK  769 (913)
T ss_pred             hHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH-HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHH-cCCH
Confidence            37778888999999999999999999999999999865 588999999999999999999999999888888888 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|.....+||+-.|++
T Consensus       770 ~~a~~lmakALQecp~s  786 (913)
T KOG0495|consen  770 EQAELLMAKALQECPSS  786 (913)
T ss_pred             HHHHHHHHHHHHhCCcc
Confidence            99999999999999975

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.97  E-value=0.0066  Score=59.37  Aligned_cols=94  Identities=16%  Similarity=0.111  Sum_probs=79.1

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G  257 (277)
                      .|..-+..-+++++|.+..+.+++..-+..  +..+.-.+  ..+++..=++..++.++..|++|..++.+|.+++. .+
T Consensus       268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l--~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k-~~  342 (400)
T COG3071         268 AYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRL--RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK-NK  342 (400)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhc--CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH-hh
Confidence            455556667899999999999999876655  33333334  47899999999999999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 023753          258 DASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       258 d~deAi~~yekALeldPdD  276 (277)
                      .+.+|..+|+.|+...|+.
T Consensus       343 ~w~kA~~~leaAl~~~~s~  361 (400)
T COG3071         343 LWGKASEALEAALKLRPSA  361 (400)
T ss_pred             HHHHHHHHHHHHHhcCCCh
Confidence            9999999999999998863

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=96.94  E-value=0.0017  Score=63.16  Aligned_cols=62  Identities=16%  Similarity=0.113  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753          210 LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       210 l~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeld  273 (277)
                      +-..|.-|+ ++|.|++|+.||.+++.++|.|+..+.+-|.+|+. .+.|..|+.-++.||.++
T Consensus       100 iKE~GN~yF-KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd  161 (536)
T KOG4648|consen  100 IKERGNTYF-KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALD  161 (536)
T ss_pred             HHHhhhhhh-hccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhh
Confidence            445677787 89999999999999999999999999999999999 999999999999999886

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.91  E-value=0.0023  Score=61.43  Aligned_cols=56  Identities=21%  Similarity=0.332  Sum_probs=53.3

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       220 ~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ..|+.++|...|+.|++++|++++++..+|.+.-. .++.-+|-.+|-+|+.++|.|
T Consensus       128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~n  183 (472)
T KOG3824|consen  128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGN  183 (472)
T ss_pred             hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCc
Confidence            58999999999999999999999999999999888 899999999999999999976

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.88  E-value=0.0034  Score=59.24  Aligned_cols=94  Identities=15%  Similarity=0.173  Sum_probs=76.7

Q ss_pred             HHHHhCCCcHHHHHHHHHHH----HhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMI----EANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekAL----eldP--~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~  254 (277)
                      .+..+-||.+.|..+|+++-    .++-  .+..++.+.+.++. ..++|..|...|.+.+..||.++.+.++.|.|++-
T Consensus       220 r~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l-g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY  298 (366)
T KOG2796|consen  220 RISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL-GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY  298 (366)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee-cccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence            34445588888999998443    3332  33456777777665 78899999999999999999999999999999988


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC
Q 023753          255 AHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       255 ~~Gd~deAi~~yekALeldPdD  276 (277)
                       .|+..+|++.+++++++.|..
T Consensus       299 -lg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  299 -LGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             -HHHHHHHHHHHHHHhccCCcc
Confidence             999999999999999999863

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.88  E-value=0.0049  Score=63.49  Aligned_cols=63  Identities=6%  Similarity=0.027  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       208 ~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                      ..|..+...+. ..|+++.|+..++++++++|++...|..+..+|.. .|++++|.+.++...+.
T Consensus       495 ~~~~~Ll~a~~-~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~-~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        495 NMWAALLTACR-IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS-SGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHH-HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh-CCCHHHHHHHHHHHHHc
Confidence            34555555454 45666666666666666667666666666666666 67777777766665543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.87  E-value=0.0079  Score=60.59  Aligned_cols=85  Identities=21%  Similarity=0.130  Sum_probs=69.0

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------C----
Q 023753          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---------------------D----  241 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~---------------------n----  241 (277)
                      .+..+-+++-++||+++|+.+.+|..+|.   +...-..+|+++|++|++....                     +    
T Consensus       182 Rnp~aRIkaA~eALei~pdCAdAYILLAE---EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~  258 (539)
T PF04184_consen  182 RNPQARIKAAKEALEINPDCADAYILLAE---EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL  258 (539)
T ss_pred             CCHHHHHHHHHHHHHhhhhhhHHHhhccc---ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence            56778899999999999999999988875   3455678888888888875210                     1    


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       242 ~~al~~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                      ..+...+|.|+++ .|+.++|++.|+..++.+|.
T Consensus       259 ~y~KrRLAmCark-lGr~~EAIk~~rdLlke~p~  291 (539)
T PF04184_consen  259 VYAKRRLAMCARK-LGRLREAIKMFRDLLKEFPN  291 (539)
T ss_pred             hhhHHHHHHHHHH-hCChHHHHHHHHHHHhhCCc
Confidence            3445678999999 99999999999999998886

The molecular function of this protein is uncertain.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.86  E-value=0.012  Score=54.64  Aligned_cols=102  Identities=19%  Similarity=0.122  Sum_probs=78.8

Q ss_pred             cchhhHHHHHHh--CCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Q 023753          174 GFSGSNNNYSNN--NHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---IL  245 (277)
Q Consensus       174 ~~~~yY~~m~e~--~Gd~deAi~~yekALeldP~n~---~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~---al  245 (277)
                      .....|.+....  .|++++|+.+|+++....|..+   .+...++..++ +.+++++|+.++++-+.+.|+++.   ++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            345556544443  4999999999999999999876   57788888887 899999999999999999997644   45


Q ss_pred             HHHHHHHHHHcC----C---HHHHHHHHHHHHHhCCCC
Q 023753          246 SLYADLIWQAHK----D---ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       246 ~~LA~ll~~~~G----d---~deAi~~yekALeldPdD  276 (277)
                      +..|..++....    |   ..+|+..|+..|+..|+.
T Consensus       112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS  149 (254)
T COG4105         112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS  149 (254)
T ss_pred             HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence            556666554222    2   347889999999999984

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.83  E-value=0.0067  Score=52.07  Aligned_cols=62  Identities=24%  Similarity=0.215  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753          211 GNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       211 ~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldP  274 (277)
                      -.-|..+. ..++++.|++.|.+||.+-|.++.+|++-|..+.. +++.++|++-+++|+++.-
T Consensus        47 El~~vala-E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag  108 (175)
T KOG4555|consen   47 ELKAIALA-EAGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAG  108 (175)
T ss_pred             HHHHHHHH-hccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcC
Confidence            34455665 58999999999999999999999999999999988 9999999999999999864

>smart00028 TPR Tetratricopeptide repeats

Probab=96.83  E-value=0.002  Score=36.96  Aligned_cols=31  Identities=19%  Similarity=0.324  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       244 al~~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                      ++..+|.+++. .+++++|+.+|+++++++|+
T Consensus         3 ~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLK-LGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHH-HhhHHHHHHHHHHHHccCCC
Confidence            34455555555 55555555555555555554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.82  E-value=0.0079  Score=66.39  Aligned_cols=95  Identities=21%  Similarity=0.274  Sum_probs=83.7

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHc
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYADLIWQAH  256 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~--n~~al~~LA~ll~~~~  256 (277)
                      +..+|+....+++|.++|+.+++..-+-..+|..||.++. .+.+-++|...+.+|++.-|.  ...+..-+|.+-++ .
T Consensus      1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl-~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk-~ 1613 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLL-RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK-Y 1613 (1710)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHh-cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-c
Confidence            3577888889999999999999988888899999999986 777888999999999999997  77788888998888 9


Q ss_pred             CCHHHHHHHHHHHHHhCCC
Q 023753          257 KDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       257 Gd~deAi~~yekALeldPd  275 (277)
                      ||.+++..+|+-.+..+|.
T Consensus      1614 GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred             CCchhhHHHHHHHHhhCcc
Confidence            9999999999999988875

>PLN03077 Protein ECB2; Provisional

Probab=96.81  E-value=0.011  Score=62.21  Aligned_cols=85  Identities=9%  Similarity=0.074  Sum_probs=58.6

Q ss_pred             HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 023753          183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA  262 (277)
Q Consensus       183 ~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deA  262 (277)
                      +...|++++|++.++++ .+.|+ +.+|..+-..+. ..++.+.|+...+++++++|+++.+|..++.+|.. .|++++|
T Consensus       635 l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~-~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~-~g~~~~a  710 (857)
T PLN03077        635 LGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACR-IHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD-AGKWDEV  710 (857)
T ss_pred             HHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHH-HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH-CCChHHH
Confidence            33456677777777665 24453 455555555554 56777777777777888888888888888888877 8888888


Q ss_pred             HHHHHHHHH
Q 023753          263 ESYFDQAVK  271 (277)
Q Consensus       263 i~~yekALe  271 (277)
                      .+..+...+
T Consensus       711 ~~vr~~M~~  719 (857)
T PLN03077        711 ARVRKTMRE  719 (857)
T ss_pred             HHHHHHHHH
Confidence            877766654

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.79  E-value=0.0075  Score=60.16  Aligned_cols=85  Identities=22%  Similarity=0.200  Sum_probs=71.1

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD----GNILSLYADLIWQAHKDASRA  262 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n----~~al~~LA~ll~~~~Gd~deA  262 (277)
                      .+.+.|.+.++...+..|+.+..++..|+++. ..++.++|++.|++|+.....-    ...++.+++++.. +.++++|
T Consensus       247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~~A  324 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLER-LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWEEA  324 (468)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHHHH
Confidence            56788999999999999999999999999887 8899999999999988644433    2346678888888 8999999


Q ss_pred             HHHHHHHHHhC
Q 023753          263 ESYFDQAVKSA  273 (277)
Q Consensus       263 i~~yekALeld  273 (277)
                      ..+|.+.++.+
T Consensus       325 ~~~f~~L~~~s  335 (468)
T PF10300_consen  325 AEYFLRLLKES  335 (468)
T ss_pred             HHHHHHHHhcc
Confidence            99999988754

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.79  E-value=0.0077  Score=56.20  Aligned_cols=65  Identities=28%  Similarity=0.304  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          210 LGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       210 l~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      .|+.|.-++ +.|+|..|++.|..-|+..|+.   +.+++.||.+++. +|+|++|...|..+++-.|+.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s  211 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKS  211 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCC
Confidence            566666665 6899999999999999999975   6789999999999 999999999999999998875

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.76  E-value=0.0029  Score=38.81  Aligned_cols=31  Identities=29%  Similarity=0.400  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       244 al~~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                      +++.+|.++.. .|++++|+.+|+++++..|+
T Consensus         2 a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYK-LGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcC
Confidence            45566666666 66666666666666666665

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.75  E-value=0.0069  Score=64.24  Aligned_cols=87  Identities=15%  Similarity=0.056  Sum_probs=81.2

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF  266 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~y  266 (277)
                      +++.+|.+...+.++..|+-+.+...-|..+. +.|++++|..+++..-...++|-..+..+-.||.+ ++++++|..+|
T Consensus        23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-~~~~d~~~~~Y  100 (932)
T KOG2053|consen   23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLF-RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD-LGKLDEAVHLY  100 (932)
T ss_pred             HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH-HhhhhHHHHHH
Confidence            78999999999999999999999988888886 89999999988888888888999999999999999 99999999999


Q ss_pred             HHHHHhCCC
Q 023753          267 DQAVKSAPD  275 (277)
Q Consensus       267 ekALeldPd  275 (277)
                      ++|++.+|+
T Consensus       101 e~~~~~~P~  109 (932)
T KOG2053|consen  101 ERANQKYPS  109 (932)
T ss_pred             HHHHhhCCc
Confidence            999999996

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.71  E-value=0.016  Score=45.46  Aligned_cols=78  Identities=15%  Similarity=0.062  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023753          191 STDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD--GNILSLYADLIWQAHKDASRAESYFDQ  268 (277)
Q Consensus       191 eAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n--~~al~~LA~ll~~~~Gd~deAi~~yek  268 (277)
                      ..+..++++++.+|+|..+.+.+|..+. ..|++++|++.+-.+++.++++  ..+...+-.++-. .|.-+....-|++
T Consensus         6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~-lg~~~plv~~~RR   83 (90)
T PF14561_consen    6 PDIAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL-LGPGDPLVSEYRR   83 (90)
T ss_dssp             HHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH-H-TT-HHHHHHHH
T ss_pred             ccHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH-cCCCChHHHHHHH
Confidence            4567899999999999999999999887 8999999999999999999865  5555555444444 6665544444554


Q ss_pred             HH
Q 023753          269 AV  270 (277)
Q Consensus       269 AL  270 (277)
                      -+
T Consensus        84 kL   85 (90)
T PF14561_consen   84 KL   85 (90)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.022  Score=54.01  Aligned_cols=88  Identities=17%  Similarity=0.158  Sum_probs=74.0

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH--------------------------------
Q 023753          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCG--------------------------------  232 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~e--------------------------------  232 (277)
                      ..+++.+|...|..+++.+|++..+...|+.+|. ..|+.+.|...+.                                
T Consensus       146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l-~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~  224 (304)
T COG3118         146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLL-AAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD  224 (304)
T ss_pred             hccchhhHHHHHHHHHHhCcccchHHHHHHHHHH-HcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence            3589999999999999999999999999999886 6887766554433                                


Q ss_pred             --HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753          233 --RAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       233 --kALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldP  274 (277)
                        +.+..||+|.++.+.+|..+.. .|+.++|.+.+-..++.+-
T Consensus       225 l~~~~aadPdd~~aa~~lA~~~~~-~g~~e~Ale~Ll~~l~~d~  267 (304)
T COG3118         225 LQRRLAADPDDVEAALALADQLHL-VGRNEAALEHLLALLRRDR  267 (304)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcc
Confidence              2334599999999999999999 9999999999988887753

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.67  E-value=0.018  Score=60.43  Aligned_cols=90  Identities=10%  Similarity=0.058  Sum_probs=71.9

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNILSLYA  249 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~-----~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n------~~al~~LA  249 (277)
                      .++...+++++|..+++++++..|...     .++..+|.++. ..|++++|+.++++++......      ..++.++|
T Consensus       460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la  538 (903)
T PRK04841        460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS  538 (903)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence            344567999999999999998655432     35667787776 7999999999999999764421      24567789


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Q 023753          250 DLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       250 ~ll~~~~Gd~deAi~~yekALel  272 (277)
                      .+++. .|++++|..++++++++
T Consensus       539 ~~~~~-~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        539 EILFA-QGFLQAAYETQEKAFQL  560 (903)
T ss_pred             HHHHH-CCCHHHHHHHHHHHHHH
Confidence            99998 99999999999999876

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.62  E-value=0.011  Score=59.50  Aligned_cols=96  Identities=16%  Similarity=0.226  Sum_probs=86.2

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G  257 (277)
                      -|.++-+.++++..|...|++||..|-.|...|..|+.+-. +.+...-|...+.+|+.+-|.--..|+-+-.+--. .|
T Consensus        78 kYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Em-knk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~-Lg  155 (677)
T KOG1915|consen   78 KYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEM-KNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM-LG  155 (677)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH-hhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH-hc
Confidence            46677788899999999999999999999999999999775 78889999999999999999988888888776655 89


Q ss_pred             CHHHHHHHHHHHHHhCCC
Q 023753          258 DASRAESYFDQAVKSAPD  275 (277)
Q Consensus       258 d~deAi~~yekALeldPd  275 (277)
                      +..-|.+.|++=+...|+
T Consensus       156 Ni~gaRqiferW~~w~P~  173 (677)
T KOG1915|consen  156 NIAGARQIFERWMEWEPD  173 (677)
T ss_pred             ccHHHHHHHHHHHcCCCc
Confidence            999999999999998886

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.57  E-value=0.0057  Score=62.14  Aligned_cols=87  Identities=28%  Similarity=0.161  Sum_probs=77.1

Q ss_pred             cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023753          189 SSSTDAYYEKMIEANPGNALLLGNYARFLKE--VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF  266 (277)
Q Consensus       189 ~deAi~~yekALeldP~n~~al~nLA~lL~e--~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~y  266 (277)
                      ...|+..|-++++.-|.....+.|+|.++..  ..++.-.|+.-+..|+++||-...+++.|+.++.+ .+++.+|+.+.
T Consensus       390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e-l~r~~eal~~~  468 (758)
T KOG1310|consen  390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE-LTRYLEALSCH  468 (758)
T ss_pred             HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH-HhhHHHhhhhH
Confidence            4579999999999999999999999988751  23577789999999999999999999999999999 99999999999


Q ss_pred             HHHHHhCCCC
Q 023753          267 DQAVKSAPDD  276 (277)
Q Consensus       267 ekALeldPdD  276 (277)
                      ..+....|.|
T Consensus       469 ~alq~~~Ptd  478 (758)
T KOG1310|consen  469 WALQMSFPTD  478 (758)
T ss_pred             HHHhhcCchh
Confidence            9888888854

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.54  E-value=0.0044  Score=40.05  Aligned_cols=25  Identities=36%  Similarity=0.606  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023753          210 LGNYARFLKEVRGDFAKAEELCGRAI  235 (277)
Q Consensus       210 l~nLA~lL~e~~Gd~eeA~e~~ekAL  235 (277)
                      |.++|.++. ..|++++|+++|++|+
T Consensus         2 l~~Lg~~~~-~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYR-QQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHH-HCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence            344444443 4445555555555533

>smart00028 TPR Tetratricopeptide repeats

Probab=96.53  E-value=0.0044  Score=35.45  Aligned_cols=33  Identities=24%  Similarity=0.287  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD  241 (277)
Q Consensus       208 ~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n  241 (277)
                      .+++++|.++. ..+++++|+.+|+++++++|.+
T Consensus         2 ~~~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYL-KLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHH-HHhhHHHHHHHHHHHHccCCCC
Confidence            46788998887 7899999999999999998864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.48  E-value=0.018  Score=57.46  Aligned_cols=91  Identities=16%  Similarity=0.092  Sum_probs=69.2

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI-LSLYADLIWQ  254 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n----~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a-l~~LA~ll~~  254 (277)
                      +++....++.++|+..|++|+.....-    ...++.+++++. .+.+|++|..+|.+.++.+.-.... .+..|.++..
T Consensus       274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~-~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~  352 (468)
T PF10300_consen  274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM-FQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM  352 (468)
T ss_pred             HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH-HHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            366666799999999999998543332    356778888886 7899999999999999987654444 4445666666


Q ss_pred             HcCCH-------HHHHHHHHHHHHh
Q 023753          255 AHKDA-------SRAESYFDQAVKS  272 (277)
Q Consensus       255 ~~Gd~-------deAi~~yekALel  272 (277)
                       .++.       ++|.++|.++-.+
T Consensus       353 -l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  353 -LGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             -hccchhhhhhHHHHHHHHHHHHHH
Confidence             8988       8888888887544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.03  Score=52.72  Aligned_cols=100  Identities=17%  Similarity=0.139  Sum_probs=85.0

Q ss_pred             hhhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 023753          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (277)
Q Consensus       176 ~~yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~  255 (277)
                      -.||+.++..+..-..|+++-+.+|.++|.|..+|.-.-.++.....+..+-++++.+.++-+|.|.++|.+--.+.-. 
T Consensus        46 m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~-  124 (318)
T KOG0530|consen   46 MDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVEL-  124 (318)
T ss_pred             HHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHH-
Confidence            4588999999999999999999999999999999887777777677789999999999999999999999877666655 


Q ss_pred             cCCHH-HHHHHHHHHHHhCCCC
Q 023753          256 HKDAS-RAESYFDQAVKSAPDD  276 (277)
Q Consensus       256 ~Gd~d-eAi~~yekALeldPdD  276 (277)
                      .+++. +-+++.+.++..+..|
T Consensus       125 l~d~s~rELef~~~~l~~DaKN  146 (318)
T KOG0530|consen  125 LGDPSFRELEFTKLMLDDDAKN  146 (318)
T ss_pred             hcCcccchHHHHHHHHhccccc
Confidence            78877 7778888888766554

>PRK10941 hypothetical protein; Provisional

Probab=96.45  E-value=0.02  Score=53.57  Aligned_cols=66  Identities=17%  Similarity=0.035  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Q 023753          210 LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW  277 (277)
Q Consensus       210 l~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD~  277 (277)
                      +.|+=.+|. ..+++++|+.+.++.+.++|+++.-+..-|.+|.+ .+.+..|+.-|+..|+..|++.
T Consensus       184 l~nLK~~~~-~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp  249 (269)
T PRK10941        184 LDTLKAALM-EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDP  249 (269)
T ss_pred             HHHHHHHHH-HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCch
Confidence            445544554 78999999999999999999999999999999999 9999999999999999999873

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.44  E-value=0.034  Score=60.88  Aligned_cols=87  Identities=15%  Similarity=0.142  Sum_probs=46.3

Q ss_pred             HHhCCCcHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcC
Q 023753          183 SNNNHGSSSTDAYYEKMIE----ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN-PSDGNILSLYADLIWQAHK  257 (277)
Q Consensus       183 ~e~~Gd~deAi~~yekALe----ldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld-P~n~~al~~LA~ll~~~~G  257 (277)
                      +...+++++|.+.|+++.+    +.|+ ...+..+...|. +.|++++|++.|+++.+.+ +.+...|..+...|.+ .|
T Consensus       552 ~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~-k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k-~G  628 (1060)
T PLN03218        552 CGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACA-NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ-KG  628 (1060)
T ss_pred             HHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cC
Confidence            3344666666666666654    2343 334444444444 5566666666666665554 2344555555555555 55


Q ss_pred             CHHHHHHHHHHHHHh
Q 023753          258 DASRAESYFDQAVKS  272 (277)
Q Consensus       258 d~deAi~~yekALel  272 (277)
                      ++++|+.+|++..+.
T Consensus       629 ~~deAl~lf~eM~~~  643 (1060)
T PLN03218        629 DWDFALSIYDDMKKK  643 (1060)
T ss_pred             CHHHHHHHHHHHHHc
Confidence            666666655555543

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.44  E-value=0.036  Score=60.67  Aligned_cols=89  Identities=10%  Similarity=0.094  Sum_probs=66.6

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEAN--PGNALLLGNYARFLKEVRGDFAKAEELCGRAILA----NPSDGNILSLYADLIWQ  254 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeld--P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel----dP~n~~al~~LA~ll~~  254 (277)
                      ..|...|++++|+..|+++.+..  | |...|+.+...|. +.+++++|.+.|++....    .|+ ...|..+-.+|.+
T Consensus       515 ~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~-k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k  591 (1060)
T PLN03218        515 DGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACG-QSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACAN  591 (1060)
T ss_pred             HHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHH
Confidence            45556788888888888887653  4 4666777777776 788888888888888763    454 4566677777777


Q ss_pred             HcCCHHHHHHHHHHHHHhC
Q 023753          255 AHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       255 ~~Gd~deAi~~yekALeld  273 (277)
                       .|++++|+++|+++.+.+
T Consensus       592 -~G~ldeA~elf~~M~e~g  609 (1060)
T PLN03218        592 -AGQVDRAKEVYQMIHEYN  609 (1060)
T ss_pred             -CCCHHHHHHHHHHHHHcC
Confidence             888888888888887764

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.41  E-value=0.016  Score=41.46  Aligned_cols=42  Identities=21%  Similarity=0.202  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753          209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (277)
Q Consensus       209 al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l  251 (277)
                      .++.+|..++ +.++|++|..+++++++++|+|..+......+
T Consensus         3 ~lY~lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    3 CLYYLAIGHY-KLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHH-HTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            4667777777 89999999999999999999999987665443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.37  E-value=0.02  Score=46.95  Aligned_cols=52  Identities=13%  Similarity=0.054  Sum_probs=44.7

Q ss_pred             HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753          184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL  236 (277)
Q Consensus       184 e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALe  236 (277)
                      ...+++++|+..+++++.++|.+..++..+-.+|. ..|+..+|+++|++...
T Consensus        73 ~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   73 LEAGDYEEALRLLQRALALDPYDEEAYRLLMRALA-AQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999897 89999999999998754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.36  E-value=0.0069  Score=39.10  Aligned_cols=28  Identities=25%  Similarity=0.357  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          244 ILSLYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       244 al~~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                      ++.++|.+|.. .|++++|+.+|+++|.+
T Consensus         1 al~~Lg~~~~~-~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQ-QGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence            47889999999 99999999999996544

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.34  E-value=0.018  Score=55.98  Aligned_cols=81  Identities=21%  Similarity=0.185  Sum_probs=41.2

Q ss_pred             CCCcHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 023753          186 NHGSSSTDAYYEKMIEA-NPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR  261 (277)
Q Consensus       186 ~Gd~deAi~~yekALel-dP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de  261 (277)
                      +|+...-...++|.+-. +|+-   ..++..|+..+. ..|-|++|++..++|+++||.|..+...++.++.. .+++++
T Consensus       150 ~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~-E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem-~~r~Ke  227 (491)
T KOG2610|consen  150 NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE-ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEM-NGRHKE  227 (491)
T ss_pred             ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH-HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHh-cchhhh
Confidence            34444444444444444 4443   233444444443 45555555555556666655555555555555544 555555


Q ss_pred             HHHHHHH
Q 023753          262 AESYFDQ  268 (277)
Q Consensus       262 Ai~~yek  268 (277)
                      ++++..+
T Consensus       228 g~eFM~~  234 (491)
T KOG2610|consen  228 GKEFMYK  234 (491)
T ss_pred             HHHHHHh
Confidence            5555443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.32  E-value=0.013  Score=45.90  Aligned_cols=49  Identities=22%  Similarity=0.139  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          227 AEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       227 A~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      .+..++++++.+|+|..+.+.+|..+.. .|++++|++.+-.+++.+++.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccc
Confidence            4678899999999999999999999999 999999999999999998764

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.31  E-value=0.017  Score=55.54  Aligned_cols=84  Identities=12%  Similarity=-0.055  Sum_probs=76.0

Q ss_pred             HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 023753          184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE  263 (277)
Q Consensus       184 e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi  263 (277)
                      ....+|+.|++++..-.+.+|.+...+..+|.+|+ ...+|..|..||++.-.+.|....+..+.|.-+++ .+.+.+|+
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY-~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADAL   98 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYY-RLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADAL   98 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHHH
Confidence            34568999999999999999999999999999998 78999999999999999999999999999999999 89999888


Q ss_pred             HHHHHH
Q 023753          264 SYFDQA  269 (277)
Q Consensus       264 ~~yekA  269 (277)
                      ......
T Consensus        99 rV~~~~  104 (459)
T KOG4340|consen   99 RVAFLL  104 (459)
T ss_pred             HHHHHh
Confidence            766544

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.30  E-value=0.014  Score=53.81  Aligned_cols=94  Identities=16%  Similarity=0.087  Sum_probs=71.5

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-Hc
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ-AH  256 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~-~~  256 (277)
                      |.+-.+...++++.|.+.|...+++||.+-.++.|.|..++ ..|++.-|.+-+.+-...||+||.--.   ++|+. ..
T Consensus       104 yLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~L---WLYl~E~k  179 (297)
T COG4785         104 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSL---WLYLNEQK  179 (297)
T ss_pred             HHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHH---HHHHHHhh
Confidence            44555556799999999999999999999999999998776 689999999999999999999996432   22222 13


Q ss_pred             CCHHHHHH-HHHHHHHhCCC
Q 023753          257 KDASRAES-YFDQAVKSAPD  275 (277)
Q Consensus       257 Gd~deAi~-~yekALeldPd  275 (277)
                      -+..+|.. ..+++-..+.+
T Consensus       180 ~dP~~A~tnL~qR~~~~d~e  199 (297)
T COG4785         180 LDPKQAKTNLKQRAEKSDKE  199 (297)
T ss_pred             CCHHHHHHHHHHHHHhccHh
Confidence            46667664 44555555433

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.28  E-value=0.052  Score=51.13  Aligned_cols=84  Identities=23%  Similarity=0.227  Sum_probs=44.5

Q ss_pred             cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH-HHHHHH
Q 023753          189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR-AESYFD  267 (277)
Q Consensus       189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de-Ai~~ye  267 (277)
                      +..|.-+|+..-+..|-.+..++..|.+.. .+++|++|+..++.|+..++++|+++.++-.+... .|.-.+ -..++.
T Consensus       189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l-~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~-~Gkd~~~~~r~l~  266 (299)
T KOG3081|consen  189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHL-QLGRYEEAESLLEEALDKDAKDPETLANLIVLALH-LGKDAEVTERNLS  266 (299)
T ss_pred             hhhHHHHHHHHhcccCCChHHHccHHHHHH-HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCChHHHHHHHH
Confidence            344555555555544555555555555443 55666666666666666666666666666555544 443322 233444


Q ss_pred             HHHHhCC
Q 023753          268 QAVKSAP  274 (277)
Q Consensus       268 kALeldP  274 (277)
                      +.....|
T Consensus       267 QLk~~~p  273 (299)
T KOG3081|consen  267 QLKLSHP  273 (299)
T ss_pred             HHHhcCC
Confidence            4444444

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.27  E-value=0.0052  Score=56.88  Aligned_cols=63  Identities=16%  Similarity=0.225  Sum_probs=56.1

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN  243 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~  243 (277)
                      ..|....+|.+.|.+.|.+|+++-|....-|+.+|.+- ++.|+++.|.+.|++.++++|.+..
T Consensus         2 a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~-ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           2 AYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYT-EKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             cchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhh-hhcccHHHHHHHHHHHHcCCccccc
Confidence            35666779999999999999999999999999999755 6999999999999999999998754

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.24  E-value=0.017  Score=52.80  Aligned_cols=66  Identities=21%  Similarity=0.124  Sum_probs=58.1

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l  251 (277)
                      ..+..+.|+..+.+||+++|.+..++...|.+|- +...|++|++-|.+.++++|....+.-..+.+
T Consensus       146 Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye-k~ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  146 KLRKWESAIEDCSKAIELNPTYEKALERRAEAYE-KMEKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            3467889999999999999999999999998885 88999999999999999999988876655544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.23  E-value=0.045  Score=57.44  Aligned_cols=92  Identities=14%  Similarity=0.099  Sum_probs=70.8

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPG--------NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-----DGNILS  246 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~--------n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~-----n~~al~  246 (277)
                      ..++...|++++|..++++++++-..        ...++..+|.+++ ..|++++|..++++++.+...     ...++.
T Consensus       538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~  616 (903)
T PRK04841        538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW-EWARLDEAEQCARKGLEVLSNYQPQQQLQCLA  616 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH-HhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence            34556679999999999999886221        2334556787787 679999999999999886432     244566


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753          247 LYADLIWQAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       247 ~LA~ll~~~~Gd~deAi~~yekALeld  273 (277)
                      .+|.++.. .|++++|..++++++.+.
T Consensus       617 ~la~~~~~-~G~~~~A~~~l~~a~~~~  642 (903)
T PRK04841        617 MLAKISLA-RGDLDNARRYLNRLENLL  642 (903)
T ss_pred             HHHHHHHH-cCCHHHHHHHHHHHHHHH
Confidence            68888888 999999999999997753

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.21  E-value=0.021  Score=58.83  Aligned_cols=87  Identities=8%  Similarity=0.001  Sum_probs=45.7

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-SDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP-~n~~al~~LA~ll~~~~Gd~  259 (277)
                      .+|...|++++|...|+++   .+.|...|+.+...|. ..|++++|++.|++..+..- -|...+..+..++.. .+++
T Consensus       267 ~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~-~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~-~g~~  341 (697)
T PLN03081        267 DMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYA-LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR-LALL  341 (697)
T ss_pred             HHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-ccch
Confidence            4555556666666666554   2335555555555554 55666666666665544321 133344444444544 5555


Q ss_pred             HHHHHHHHHHHHh
Q 023753          260 SRAESYFDQAVKS  272 (277)
Q Consensus       260 deAi~~yekALel  272 (277)
                      ++|.+.+..+++.
T Consensus       342 ~~a~~i~~~m~~~  354 (697)
T PLN03081        342 EHAKQAHAGLIRT  354 (697)
T ss_pred             HHHHHHHHHHHHh
Confidence            5555555555443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.19  E-value=0.011  Score=36.16  Aligned_cols=33  Identities=30%  Similarity=0.266  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD  241 (277)
Q Consensus       208 ~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n  241 (277)
                      .+++++|.++. ..|++++|+++|+++++..|+.
T Consensus         1 ~a~~~~a~~~~-~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYY-KLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHH-HHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHH-HccCHHHHHHHHHHHHHHCcCC
Confidence            46889999887 7899999999999999999973

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.16  E-value=0.0071  Score=55.97  Aligned_cols=60  Identities=18%  Similarity=0.221  Sum_probs=55.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          215 RFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       215 ~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ..+. ..+|.+.|.+.|.+|+++.|+...-|+.+|..... .|+++.|.+.|++.++++|.|
T Consensus         3 ~~~~-~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ek-ag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           3 YMLA-ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEK-AGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             chhc-ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhh-cccHHHHHHHHHHHHcCCccc
Confidence            3444 67899999999999999999999999999998877 999999999999999999987

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.12  E-value=0.031  Score=54.49  Aligned_cols=82  Identities=10%  Similarity=-0.012  Sum_probs=42.5

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH---HHHHHHHHHHHHcCCHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-DGN---ILSLYADLIWQAHKDASRA  262 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~-n~~---al~~LA~ll~~~~Gd~deA  262 (277)
                      |-|++|++..++|+++||.+..+....+.++. ..+++.++.++..+.-..=.. .-.   -|-..|.++++ ..+|+.|
T Consensus       189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVle-m~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE-~aeye~a  266 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINRFDCWASHAKAHVLE-MNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE-GAEYEKA  266 (491)
T ss_pred             ccchhHHHHHHhhccCCCcchHHHHHHHHHHH-hcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc-ccchhHH
Confidence            55666666666666666666666666666553 556666666655543221110 000   12223555555 4566666


Q ss_pred             HHHHHHHH
Q 023753          263 ESYFDQAV  270 (277)
Q Consensus       263 i~~yekAL  270 (277)
                      ++.|++-|
T Consensus       267 leIyD~ei  274 (491)
T KOG2610|consen  267 LEIYDREI  274 (491)
T ss_pred             HHHHHHHH
Confidence            66665544

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.12  E-value=0.038  Score=54.05  Aligned_cols=92  Identities=15%  Similarity=0.125  Sum_probs=73.1

Q ss_pred             HhCCCcHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHH
Q 023753          184 NNNHGSSSTDAYYEKMIEA----NPGNALLLGNYARFLKEV---RGDFAKAEELCGR-AILANPSDGNILSLYADLIWQA  255 (277)
Q Consensus       184 e~~Gd~deAi~~yekALel----dP~n~~al~nLA~lL~e~---~Gd~eeA~e~~ek-ALeldP~n~~al~~LA~ll~~~  255 (277)
                      ....+|+.-+.+.+.+-.+    -++.+.+.+.||.++. .   .|+.++|+..+.. .....+.+++.+..+|.+|-+.
T Consensus       152 RdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALn-Rrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~  230 (374)
T PF13281_consen  152 RDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALN-RRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL  230 (374)
T ss_pred             hhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHh-hcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence            3457888888887777666    5567788889998886 6   7999999999999 5555678999999999987541


Q ss_pred             --------cCCHHHHHHHHHHHHHhCCCC
Q 023753          256 --------HKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       256 --------~Gd~deAi~~yekALeldPdD  276 (277)
                              ....++|+.+|.++.+++|+.
T Consensus       231 ~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  231 FLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence                    124679999999999999864

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.11  E-value=0.039  Score=56.58  Aligned_cols=100  Identities=20%  Similarity=0.216  Sum_probs=75.0

Q ss_pred             chhhHHHHHHhCCCcHHHHHHHHHHHHhC---------------------------CC----CHHHHHHHHHHHHHHcCC
Q 023753          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEAN---------------------------PG----NALLLGNYARFLKEVRGD  223 (277)
Q Consensus       175 ~~~yY~~m~e~~Gd~deAi~~yekALeld---------------------------P~----n~~al~nLA~lL~e~~Gd  223 (277)
                      ....+.+.+...++|++|...|+..++-+                           |.    ....+||.|.++. ..|+
T Consensus       112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i-~~gk  190 (652)
T KOG2376|consen  112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILI-ENGK  190 (652)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHH-hccc
Confidence            44556677778899999999998884432                           22    2346778887776 6899


Q ss_pred             HHHHHHHHHHHHHh-------CCCC--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          224 FAKAEELCGRAILA-------NPSD--------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       224 ~eeA~e~~ekALel-------dP~n--------~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      |.+|++.+++|+++       +-.+        ..+...++.++.. +|+.++|...|...|+.+|-|
T Consensus       191 y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~-~Gqt~ea~~iy~~~i~~~~~D  257 (652)
T KOG2376|consen  191 YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL-QGQTAEASSIYVDIIKRNPAD  257 (652)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHhcCCC
Confidence            99999999999443       1111        2235567888888 999999999999999999876

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.08  E-value=0.061  Score=48.74  Aligned_cols=88  Identities=19%  Similarity=0.174  Sum_probs=72.2

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGN--ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n--~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~  256 (277)
                      ..+.....+++..|...+++..+.+|..  |..+..+|.+|. ..|.++.|+..|+.|+...|. +.+...|+..+.. +
T Consensus       130 lA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la-a~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~-q  206 (251)
T COG4700         130 LAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA-AQGKYADAESAFEVAISYYPG-PQARIYYAEMLAK-Q  206 (251)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH-hcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHH-h
Confidence            3455566789999999999999999874  677888999997 899999999999999999885 5667778888888 8


Q ss_pred             CCHHHHHHHHHHH
Q 023753          257 KDASRAESYFDQA  269 (277)
Q Consensus       257 Gd~deAi~~yekA  269 (277)
                      |+.++|...|...
T Consensus       207 gr~~ea~aq~~~v  219 (251)
T COG4700         207 GRLREANAQYVAV  219 (251)
T ss_pred             cchhHHHHHHHHH
Confidence            9887776655443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.07  E-value=0.0055  Score=56.89  Aligned_cols=61  Identities=18%  Similarity=0.108  Sum_probs=55.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          214 ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       214 A~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      |.-|+ ..++|..|+.+|-+||.++|..+.++.+-|.++++ .++++.+..-..+|++++|+.
T Consensus        17 gnk~f-~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~   77 (284)
T KOG4642|consen   17 GNKCF-IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNL   77 (284)
T ss_pred             ccccc-chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHH
Confidence            44454 56789999999999999999999999999999999 999999999999999999974

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.99  E-value=0.075  Score=47.94  Aligned_cols=84  Identities=19%  Similarity=0.183  Sum_probs=62.6

Q ss_pred             CCcHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCC------CHHHHH
Q 023753          187 HGSSSTDAYYEKMIEA----NPGN---ALLLGNYARFLKEVRGD-------FAKAEELCGRAILANPS------DGNILS  246 (277)
Q Consensus       187 Gd~deAi~~yekALel----dP~n---~~al~nLA~lL~e~~Gd-------~eeA~e~~ekALeldP~------n~~al~  246 (277)
                      ..+++|++.|.-||-.    ...+   +..+..+|++|. ..++       +.+|.++|++|++....      ...+++
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR-~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYR-DLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            4677888888887653    2222   466778899886 5666       45677777777776532      256788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          247 LYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       247 ~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                      .+|.+... .|++++|+.+|.+++..
T Consensus       170 LigeL~rr-lg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  170 LIGELNRR-LGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHH-hCCHHHHHHHHHHHHcC
Confidence            89999988 99999999999999865

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.94  E-value=0.053  Score=50.43  Aligned_cols=68  Identities=16%  Similarity=0.101  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +..|++-|.... ..|++++|+.+|+++....|..   ..+...++.+++. .+++++|+.++++-+++.|++
T Consensus        34 ~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~  104 (254)
T COG4105          34 ASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTH  104 (254)
T ss_pred             HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCC
Confidence            456777776665 7899999999999999998875   4578889999999 999999999999999999985

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.94  E-value=0.011  Score=58.80  Aligned_cols=86  Identities=12%  Similarity=0.018  Sum_probs=62.0

Q ss_pred             CCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC--CHHHHHHHHHHHH
Q 023753          186 NHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILAN----PS--DGNILSLYADLIW  253 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld----P~--n~~al~~LA~ll~  253 (277)
                      .|+|+.|+..-+.-|++.-..      -.++.|+|.++. ..++++.|+++|++++.+.    ..  .+...|.||..|.
T Consensus       208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi-flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt  286 (639)
T KOG1130|consen  208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI-FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT  286 (639)
T ss_pred             eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh-hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH
Confidence            478888887777666664333      247788888776 6888888888888866543    22  3445677888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhC
Q 023753          254 QAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       254 ~~~Gd~deAi~~yekALeld  273 (277)
                      . ..++++||.|+.+-|++.
T Consensus       287 l-l~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  287 L-LKEVQKAITYHQRHLAIA  305 (639)
T ss_pred             H-HHHHHHHHHHHHHHHHHH
Confidence            7 788888888888877653

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.93  E-value=0.046  Score=56.08  Aligned_cols=91  Identities=15%  Similarity=0.153  Sum_probs=61.8

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAE--------------------------------  228 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~--------------------------------  228 (277)
                      .++..+++|++|++...+.+...|++..++..--.++. +...|++|+                                
T Consensus        20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValI-q~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dea   98 (652)
T KOG2376|consen   20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALI-QLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEA   98 (652)
T ss_pred             HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhh-hhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHH
Confidence            34445688999999999999998888776655444443 444455544                                


Q ss_pred             -HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          229 -ELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       229 -e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                       .+++   -.++.+...+...|.+++. +++|++|.+.|+..++.+-++
T Consensus        99 lk~~~---~~~~~~~~ll~L~AQvlYr-l~~ydealdiY~~L~kn~~dd  143 (652)
T KOG2376|consen   99 LKTLK---GLDRLDDKLLELRAQVLYR-LERYDEALDIYQHLAKNNSDD  143 (652)
T ss_pred             HHHHh---cccccchHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCch
Confidence             3333   2355555666777888888 888888888888887765443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.91  E-value=0.024  Score=55.52  Aligned_cols=83  Identities=13%  Similarity=0.020  Sum_probs=69.9

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 023753          185 NNHGSSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE  263 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP~n~-~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi  263 (277)
                      .+.||.-|+..++-.+.++.... .....+|.+++ ..|||++|+..|.-+...+.-+.....++|.+++- .|.|.+|.
T Consensus        34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~f-hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg~Y~eA~  111 (557)
T KOG3785|consen   34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF-HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-LGQYIEAK  111 (557)
T ss_pred             hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHH-hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-HHHHHHHH
Confidence            45799999999999987776554 44555677776 78999999999999999887788999999999998 99999999


Q ss_pred             HHHHHH
Q 023753          264 SYFDQA  269 (277)
Q Consensus       264 ~~yekA  269 (277)
                      ..-.+|
T Consensus       112 ~~~~ka  117 (557)
T KOG3785|consen  112 SIAEKA  117 (557)
T ss_pred             HHHhhC
Confidence            887765

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.90  E-value=0.043  Score=55.42  Aligned_cols=93  Identities=18%  Similarity=0.249  Sum_probs=76.5

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHHcCC
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI--LSLYADLIWQAHKD  258 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a--l~~LA~ll~~~~Gd  258 (277)
                      .+-....+++....+|++-|+..|.|-.+|..||.+-. ..|+.+.|...|+-||....-+..-  |-.|-.+-.. .+.
T Consensus       445 elElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~-~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~-~~E  522 (677)
T KOG1915|consen  445 ELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELET-SLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIE-EGE  522 (677)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhh-cch
Confidence            34445689999999999999999999999999998765 8999999999999999876554433  3344455555 799


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 023753          259 ASRAESYFDQAVKSAPD  275 (277)
Q Consensus       259 ~deAi~~yekALeldPd  275 (277)
                      +++|..+|++.|+..+.
T Consensus       523 ~ekaR~LYerlL~rt~h  539 (677)
T KOG1915|consen  523 FEKARALYERLLDRTQH  539 (677)
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            99999999999998764

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.89  E-value=0.054  Score=48.83  Aligned_cols=88  Identities=14%  Similarity=0.134  Sum_probs=60.4

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 023753          185 NNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR  261 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de  261 (277)
                      ..+++++|+..++.++..--+.   +.+-.++|.++. .++.+++|+..+.....-+ -.+.+....|.++.. .|+-++
T Consensus       101 e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~-q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~-kg~k~~  177 (207)
T COG2976         101 EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQL-QQKKADAALKTLDTIKEES-WAAIVAELRGDILLA-KGDKQE  177 (207)
T ss_pred             hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH-HhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHH-cCchHH
Confidence            3477788888888777543332   345667777776 6788888877776543311 123334556888888 899999


Q ss_pred             HHHHHHHHHHhCCC
Q 023753          262 AESYFDQAVKSAPD  275 (277)
Q Consensus       262 Ai~~yekALeldPd  275 (277)
                      |+..|++|++..++
T Consensus       178 Ar~ay~kAl~~~~s  191 (207)
T COG2976         178 ARAAYEKALESDAS  191 (207)
T ss_pred             HHHHHHHHHHccCC
Confidence            99999999988654

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.88  E-value=0.11  Score=49.16  Aligned_cols=80  Identities=16%  Similarity=0.201  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 023753          191 STDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH--KDASRAESYFDQ  268 (277)
Q Consensus       191 eAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~--Gd~deAi~~yek  268 (277)
                      ..+..|++||+.+|++...+..|-.... ..-+-++..+-+++++..+|+++..|..|-.+.....  -.+.+....|.+
T Consensus        49 ~klsilerAL~~np~~~~L~l~~l~~~~-~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~  127 (321)
T PF08424_consen   49 RKLSILERALKHNPDSERLLLGYLEEGE-KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK  127 (321)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence            4455566666666665555555544443 3445555555666666666665555544433222201  134555555655


Q ss_pred             HHH
Q 023753          269 AVK  271 (277)
Q Consensus       269 ALe  271 (277)
                      +|+
T Consensus       128 ~l~  130 (321)
T PF08424_consen  128 CLR  130 (321)
T ss_pred             HHH
Confidence            554

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.82  E-value=0.17  Score=44.13  Aligned_cols=73  Identities=19%  Similarity=0.087  Sum_probs=66.3

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      .++.++++..+.-+-.+.|+.+.+...-|+++. ..+++.+|+..|+.+....|..+.+-..++.|++. ++|..
T Consensus        23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i-~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~-~~D~~   95 (160)
T PF09613_consen   23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHI-VRGDWDDALRLLRELEERAPGFPYAKALLALCLYA-LGDPS   95 (160)
T ss_pred             cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-cCChH
Confidence            468889999999999999999999988898775 89999999999999999999999999999999988 88865

>PLN03077 Protein ECB2; Provisional

Probab=95.81  E-value=0.071  Score=56.27  Aligned_cols=80  Identities=13%  Similarity=0.134  Sum_probs=37.1

Q ss_pred             CCCcHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHH
Q 023753          186 NHGSSSTDAYYEKMIE--ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYADLIWQAHKDASR  261 (277)
Q Consensus       186 ~Gd~deAi~~yekALe--ldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~--n~~al~~LA~ll~~~~Gd~de  261 (277)
                      .|+.++|+.+|+++++  +.|+...+...+ ..+. ..|++++|.++|++..+..+-  +...|..+..+|.+ .|++++
T Consensus       567 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll-~a~~-~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r-~G~~~e  643 (857)
T PLN03077        567 HGKGSMAVELFNRMVESGVNPDEVTFISLL-CACS-RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR-AGKLTE  643 (857)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCCcccHHHHH-HHHh-hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh-CCCHHH
Confidence            4555555555555554  234333322222 2232 345555555555555432211  22344455555555 555555


Q ss_pred             HHHHHHH
Q 023753          262 AESYFDQ  268 (277)
Q Consensus       262 Ai~~yek  268 (277)
                      |.+++++
T Consensus       644 A~~~~~~  650 (857)
T PLN03077        644 AYNFINK  650 (857)
T ss_pred             HHHHHHH
Confidence            5555554

>PRK10941 hypothetical protein; Provisional

Probab=95.80  E-value=0.072  Score=49.81  Aligned_cols=72  Identities=8%  Similarity=-0.072  Sum_probs=63.3

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l  251 (277)
                      .+..+...++++.|+.+.++++.++|+++.-+...|.+|. +.+.+..|..-++.-|+..|+++.+......+
T Consensus       187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            3455566799999999999999999999999999999887 89999999999999999999999987654443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.80  E-value=0.053  Score=53.24  Aligned_cols=95  Identities=14%  Similarity=0.094  Sum_probs=65.8

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------------
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNIL------------  245 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al------------  245 (277)
                      +..--+...|+|++|.+.|+-+.+.+.-++..+.++|.+++ ..|.|.+|....++|-+ .|-....+            
T Consensus        62 Wia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F-yLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~  139 (557)
T KOG3785|consen   62 WIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKF-YLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKR  139 (557)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHH-HHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHH
Confidence            33344555799999999999999988888999999998876 78888888877666522 11111111            


Q ss_pred             ---------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          246 ---------------SLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       246 ---------------~~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                                     ..+|.+.+. .-.|++|++.|.+.+.-+|+
T Consensus       140 ~~~fh~~LqD~~EdqLSLAsvhYm-R~HYQeAIdvYkrvL~dn~e  183 (557)
T KOG3785|consen  140 ILTFHSSLQDTLEDQLSLASVHYM-RMHYQEAIDVYKRVLQDNPE  183 (557)
T ss_pred             HHHHHHHHhhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhcChh
Confidence                           123334444 45688888888888887775

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.79  E-value=0.06  Score=50.12  Aligned_cols=98  Identities=15%  Similarity=0.054  Sum_probs=70.4

Q ss_pred             CcchhhHH--HHHHhCCCcHHHHHHHHHHHHhC----C-CC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023753          173 SGFSGSNN--NYSNNNHGSSSTDAYYEKMIEAN----P-GN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI  244 (277)
Q Consensus       173 ~~~~~yY~--~m~e~~Gd~deAi~~yekALeld----P-~n-~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a  244 (277)
                      ++.+.|-+  ++|....++..|-..|.+|-+..    . ++ +..+...+.+|  +..+..+|+.++++||++-.+-...
T Consensus        32 eAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy--kk~~~~eAv~cL~~aieIyt~~Grf  109 (288)
T KOG1586|consen   32 EAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY--KKVDPEEAVNCLEKAIEIYTDMGRF  109 (288)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh--hccChHHHHHHHHHHHHHHHhhhHH
Confidence            44444444  67777788888888888885542    1 12 34555656666  4679999999999999997654333


Q ss_pred             ------HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          245 ------LSLYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       245 ------l~~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                            +..+|.+|-.-..++++|+.+|++|-+.
T Consensus       110 ~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~  143 (288)
T KOG1586|consen  110 TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY  143 (288)
T ss_pred             HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence                  4478888877458999999999998764

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.63  E-value=0.082  Score=58.81  Aligned_cols=85  Identities=15%  Similarity=0.325  Sum_probs=77.3

Q ss_pred             CCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAES  264 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~--n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~  264 (277)
                      ++.++|...+++||+--|.  +..+....|.+-+ +.||.+++..+|+-.+...|.-.+.|..|...-.. +++.+-+..
T Consensus      1578 ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF-k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik-~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKFAQLEF-KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIK-HGDIKYVRD 1655 (1710)
T ss_pred             cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh-hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHc-cCCHHHHHH
Confidence            3456788999999999998  7888889998877 89999999999999999999999999999999888 999999999


Q ss_pred             HHHHHHHhC
Q 023753          265 YFDQAVKSA  273 (277)
Q Consensus       265 ~yekALeld  273 (277)
                      +|+|++.+.
T Consensus      1656 lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1656 LFERVIELK 1664 (1710)
T ss_pred             HHHHHHhcC
Confidence            999999864

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.61  E-value=0.042  Score=49.33  Aligned_cols=62  Identities=19%  Similarity=0.148  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753          192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (277)
Q Consensus       192 Ai~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~  254 (277)
                      |+.+|++|+.+.|++...++.+|.+.. ..++.-.|+-+|-|++...--.+.+..++..++..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~-~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLAS-YQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHH-HTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhc-cccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            789999999999999999999998886 78999999999999998876678888888876655

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.56  E-value=0.03  Score=39.99  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       243 ~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +.++.+|..++. .++|++|..+.+++|+++|+|
T Consensus         2 d~lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N   34 (53)
T PF14853_consen    2 DCLYYLAIGHYK-LGEYEKARRYCDALLEIEPDN   34 (53)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-
T ss_pred             hhHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCc
Confidence            457889999999 999999999999999999987

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.54  E-value=0.074  Score=50.13  Aligned_cols=94  Identities=16%  Similarity=0.022  Sum_probs=73.4

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLK-EVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       182 m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~-e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ...+..+++-|++.++++.++|.+.......-+++-. .-...+..|.-+|+..-+.-|-.+..+...|.|.+. +++|+
T Consensus       146 I~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~~~~e  224 (299)
T KOG3081|consen  146 ILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-LGRYE  224 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-hcCHH
Confidence            3344578899999999999998765433222222211 122368899999999999888889999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|...++.||..++++
T Consensus       225 eAe~lL~eaL~kd~~d  240 (299)
T KOG3081|consen  225 EAESLLEEALDKDAKD  240 (299)
T ss_pred             HHHHHHHHHHhccCCC
Confidence            9999999999999886

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.48  E-value=0.036  Score=35.33  Aligned_cols=29  Identities=14%  Similarity=0.127  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          243 NILSLYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       243 ~al~~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                      .++.++|.+|.. +|++++|+.++++++++
T Consensus         3 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRA-QGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence            355666666666 66666666666666654

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.45  E-value=0.12  Score=44.22  Aligned_cols=84  Identities=15%  Similarity=0.107  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023753          192 TDAYYEKMIEANPGNALLLGNYARFLKE--VRGDFAKAEELCGRAIL-ANPS-DGNILSLYADLIWQAHKDASRAESYFD  267 (277)
Q Consensus       192 Ai~~yekALeldP~n~~al~nLA~lL~e--~~Gd~eeA~e~~ekALe-ldP~-n~~al~~LA~ll~~~~Gd~deAi~~ye  267 (277)
                      ..+.+.+.-....-.....++||+++..  ...|..+.+.+++..++ ..|. ..+.++++|.-++. .++|++|+.|.+
T Consensus        17 ~~e~~~rq~a~~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~~yvd   95 (149)
T KOG3364|consen   17 GQEEILRQAARSDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSLRYVD   95 (149)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHHHHHH
Confidence            3333333333333345678888888752  22366789999999997 5554 45677888888888 999999999999


Q ss_pred             HHHHhCCCC
Q 023753          268 QAVKSAPDD  276 (277)
Q Consensus       268 kALeldPdD  276 (277)
                      ..++.+|+|
T Consensus        96 ~ll~~e~~n  104 (149)
T KOG3364|consen   96 ALLETEPNN  104 (149)
T ss_pred             HHHhhCCCc
Confidence            999999987

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.42  E-value=0.088  Score=51.53  Aligned_cols=87  Identities=18%  Similarity=0.105  Sum_probs=60.0

Q ss_pred             CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh-----------CCCCHHHHHHHHHHHHHH
Q 023753          188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI-LA-----------NPSDGNILSLYADLIWQA  255 (277)
Q Consensus       188 d~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekAL-el-----------dP~n~~al~~LA~ll~~~  255 (277)
                      .+++|+.+|+++.+++|+. ..--|++.++. ..|+..+....+++.. .+           .-.+...+..++.+... 
T Consensus       241 ~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~-~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL-  317 (374)
T PF13281_consen  241 SLDKAIEWYRKGFEIEPDY-YSGINAATLLM-LAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVL-  317 (374)
T ss_pred             HHHHHHHHHHHHHcCCccc-cchHHHHHHHH-HcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH-
Confidence            4789999999999999754 44456777665 4554322222222211 11           12345556667777777 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCC
Q 023753          256 HKDASRAESYFDQAVKSAPDDW  277 (277)
Q Consensus       256 ~Gd~deAi~~yekALeldPdD~  277 (277)
                      .+|+++|++++++++++.|..|
T Consensus       318 ~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  318 AGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             cCCHHHHHHHHHHHhhcCCcch
Confidence            8999999999999999999987

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.39  E-value=0.13  Score=42.29  Aligned_cols=89  Identities=13%  Similarity=0.050  Sum_probs=68.3

Q ss_pred             HHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHc---C-------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023753          183 SNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVR---G-------DFAKAEELCGRAILANPSDGNILSLYA  249 (277)
Q Consensus       183 ~e~~Gd~deAi~~yekALeldP~n~---~al~nLA~lL~e~~---G-------d~eeA~e~~ekALeldP~n~~al~~LA  249 (277)
                      +..+|++-+|++..+..+...+++.   ..+..-|.+++...   .       -+-.|+++|.+++.+.|+.+..++.+|
T Consensus         6 ~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la   85 (111)
T PF04781_consen    6 YFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELA   85 (111)
T ss_pred             HHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHH
Confidence            3457999999999999999998876   44555565553211   1       234689999999999999999899888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Q 023753          250 DLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       250 ~ll~~~~Gd~deAi~~yekALel  272 (277)
                      .-+-- ...|++++...+++|.+
T Consensus        86 ~~l~s-~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   86 SQLGS-VKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHhhh-HHHHHHHHHHHHHHhcc
Confidence            87554 56688888888888865

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.31  E-value=0.044  Score=52.80  Aligned_cols=71  Identities=14%  Similarity=0.070  Sum_probs=61.5

Q ss_pred             HHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          200 IEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       200 LeldP--~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                      ++.-|  +++....+.|-+++ +.|+|++|++-|+.|++..-.++-+-+++|.+.+. .++++.|+++....|+.
T Consensus       135 veQlp~en~Ad~~in~gClly-kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~-~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  135 VEQLPSENEADGQINLGCLLY-KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS-SRQYASALKHISEIIER  207 (459)
T ss_pred             HHhccCCCccchhccchheee-ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh-hhhHHHHHHHHHHHHHh
Confidence            34445  56778889998887 89999999999999999999999999999999999 99999999887766653

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.27  E-value=0.13  Score=55.13  Aligned_cols=93  Identities=19%  Similarity=0.284  Sum_probs=72.3

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKM----------IEANPG----------NALLLGNYARFLKEVRGDFAKAEELCGRAI--  235 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekA----------LeldP~----------n~~al~nLA~lL~e~~Gd~eeA~e~~ekAL--  235 (277)
                      .|.+.+++.+|.+.|++||+|+          |.-+|.          ++..|..+|.++ +..|+.+.|+.+|..|-  
T Consensus       863 ~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYl-ES~GemdaAl~~Y~~A~D~  941 (1416)
T KOG3617|consen  863 NYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYL-ESVGEMDAALSFYSSAKDY  941 (1416)
T ss_pred             HHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHH-hcccchHHHHHHHHHhhhh
Confidence            3447777889999999999874          333443          345677778766 59999999999998764  


Q ss_pred             -------------------HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          236 -------------------LANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       236 -------------------eldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                                         .....|..+.|.+|..|-+ .|++.+|+.+|.+|-..
T Consensus       942 fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn-~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  942 FSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN-DGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             hhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Confidence                               2345688889999999988 99999999999987543

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.26  E-value=0.12  Score=53.19  Aligned_cols=91  Identities=18%  Similarity=0.114  Sum_probs=76.0

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHHHHHcCC
Q 023753          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY------ADLIWQAHKD  258 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~L------A~ll~~~~Gd  258 (277)
                      ..++...+...++.++..||++..++.+++..+......+..+....+.|....|+|.+++..+      +.++-. .++
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~  157 (620)
T COG3914          79 PLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL-LGR  157 (620)
T ss_pred             ccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH-hcc
Confidence            3477788999999999999999999999999886444455666666677999999999998877      776666 899


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 023753          259 ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       259 ~deAi~~yekALeldPdD  276 (277)
                      ..+|..++++++.+.|.+
T Consensus       158 ~~~~~~~l~~~~d~~p~~  175 (620)
T COG3914         158 TAEAELALERAVDLLPKY  175 (620)
T ss_pred             HHHHHHHHHHHHHhhhhh
Confidence            999999999999998864

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.22  E-value=0.27  Score=44.72  Aligned_cols=83  Identities=19%  Similarity=0.167  Sum_probs=62.3

Q ss_pred             CCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--
Q 023753          187 HGSSSTDAYYEKMIEANPGN-ALLLGNYARFLKEVRG--------DFAKAEELCGRAILANPSDGNILSLYADLIWQA--  255 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n-~~al~nLA~lL~e~~G--------d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~--  255 (277)
                      .|+.+|..+|++|.+..-.. ..+.++++.++.  .+        +..+|...|.+|....  ++.+...+|.+|..-  
T Consensus       127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~--~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~G  202 (292)
T COG0790         127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYL--SGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLG  202 (292)
T ss_pred             cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCC
Confidence            47889999999998875444 355777777665  23        3448999999988876  778888888877652  


Q ss_pred             -cCCHHHHHHHHHHHHHhC
Q 023753          256 -HKDASRAESYFDQAVKSA  273 (277)
Q Consensus       256 -~Gd~deAi~~yekALeld  273 (277)
                       ..++++|..+|++|.+..
T Consensus       203 v~~d~~~A~~wy~~Aa~~g  221 (292)
T COG0790         203 VPRDLKKAFRWYKKAAEQG  221 (292)
T ss_pred             CCcCHHHHHHHHHHHHHCC
Confidence             237889999999988764

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.18  E-value=0.051  Score=34.62  Aligned_cols=31  Identities=29%  Similarity=0.343  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILAN  238 (277)
Q Consensus       207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld  238 (277)
                      +.++.++|.+|. ..|++++|+.++++++.+.
T Consensus         2 a~~~~~la~~~~-~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYR-AQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hhhhcchhhHHHHHHHHHH
Confidence            357889999997 7899999999999999863

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=95.14  E-value=0.2  Score=45.18  Aligned_cols=87  Identities=16%  Similarity=0.082  Sum_probs=66.5

Q ss_pred             CCcchhhHHHHHHhCCCcHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHH
Q 023753          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS----DGNILS  246 (277)
Q Consensus       172 ~~~~~~yY~~m~e~~Gd~deAi~~yekALeld-P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~----n~~al~  246 (277)
                      .++...||+.   .+..-++|...|.++-... =+++...+.+|.+|.  ..|.++|+.++.+|+++.+.    |++++.
T Consensus       108 ~dP~llYy~W---sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~~~~~~n~eil~  182 (203)
T PF11207_consen  108 QDPYLLYYHW---SRFGDQEALRRFLQLEGTPELETAELQYALATYYT--KRDPEKTIQLLLRALELSNPDDNFNPEILK  182 (203)
T ss_pred             CCccHHHHHh---hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCCCCCHHHHH
Confidence            4566777774   2333467777776653322 256899999998774  78999999999999998654    599999


Q ss_pred             HHHHHHHHHcCCHHHHHH
Q 023753          247 LYADLIWQAHKDASRAES  264 (277)
Q Consensus       247 ~LA~ll~~~~Gd~deAi~  264 (277)
                      .||.++.. +++++.|--
T Consensus       183 sLas~~~~-~~~~e~AYi  199 (203)
T PF11207_consen  183 SLASIYQK-LKNYEQAYI  199 (203)
T ss_pred             HHHHHHHH-hcchhhhhh
Confidence            99999999 999998843

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.13  E-value=0.28  Score=49.78  Aligned_cols=91  Identities=18%  Similarity=0.089  Sum_probs=69.5

Q ss_pred             hCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCC---
Q 023753          185 NNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILA-NPSDGNILSLYADLIWQAHKD---  258 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP~--n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel-dP~n~~al~~LA~ll~~~~Gd---  258 (277)
                      ..|+.++|++.|+..++.+|.  +..++.++..+|. ..+.|.++...+.+==++ -|+.+...+.-|.+..+..+|   
T Consensus       271 klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL-elq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs  349 (539)
T PF04184_consen  271 KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL-ELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFS  349 (539)
T ss_pred             HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH-hcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccC
Confidence            459999999999999998876  4578999999887 689999999999885333 256677666666555442333   


Q ss_pred             ------------HHHHHHHHHHHHHhCCCC
Q 023753          259 ------------ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       259 ------------~deAi~~yekALeldPdD  276 (277)
                                  ...|++.+.+|++.||.-
T Consensus       350 ~e~a~rRGls~ae~~aveAi~RAvefNPHV  379 (539)
T PF04184_consen  350 PEAASRRGLSPAEMNAVEAIHRAVEFNPHV  379 (539)
T ss_pred             chhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence                        135789999999999963

The molecular function of this protein is uncertain.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.04  E-value=0.3  Score=45.90  Aligned_cols=95  Identities=14%  Similarity=0.057  Sum_probs=65.0

Q ss_pred             hhhHH--HHHHhCCCcHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH
Q 023753          176 SGSNN--NYSNNNHGSSSTDAYYEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILAN-----PSDG  242 (277)
Q Consensus       176 ~~yY~--~m~e~~Gd~deAi~~yekALeldP~n~~------al~nLA~lL~e~~Gd~eeA~e~~ekALeld-----P~n~  242 (277)
                      ..|.+  ..|....++++|..++.+|++-..+|..      ++-..+.++. ....+.++..+|++|..+.     |+-+
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLak-e~~klsEvvdl~eKAs~lY~E~GspdtA  110 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAK-ELSKLSEVVDLYEKASELYVECGSPDTA  110 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence            34444  3455568999999999999976655532      2223333343 5678999999999999873     4433


Q ss_pred             H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753          243 N-ILSLYADLIWQAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       243 ~-al~~LA~ll~~~~Gd~deAi~~yekALeld  273 (277)
                      . ++-.-|. ..+ ..+.++|+++|++++++-
T Consensus       111 AmaleKAak-~le-nv~Pd~AlqlYqralavv  140 (308)
T KOG1585|consen  111 AMALEKAAK-ALE-NVKPDDALQLYQRALAVV  140 (308)
T ss_pred             HHHHHHHHH-Hhh-cCCHHHHHHHHHHHHHHH
Confidence            3 3333444 445 689999999999998764

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.95  E-value=0.097  Score=51.53  Aligned_cols=89  Identities=21%  Similarity=0.184  Sum_probs=69.5

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHH
Q 023753          182 YSNNNHGSSSTDAYYEKMIEANPGN----------ALLLGNYARFLKEVRGDFAKAEELCGRAILANP------SDGNIL  245 (277)
Q Consensus       182 m~e~~Gd~deAi~~yekALeldP~n----------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP------~n~~al  245 (277)
                      ++....|+++|..+..+|.++--..          ..+++.++..|. .+|++-.|.+++++|.++.-      -.+.-+
T Consensus       171 lf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR-~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~  249 (518)
T KOG1941|consen  171 LFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR-LLGRLGDAMECCEEAMKLALQHGDRALQARCL  249 (518)
T ss_pred             HHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            3344467889999999998874322          356788888887 79999999999999988742      234456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          246 SLYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       246 ~~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                      ..+|++|.. .+|.+.|-.-|++|...
T Consensus       250 ~~~aDIyR~-~gd~e~af~rYe~Am~~  275 (518)
T KOG1941|consen  250 LCFADIYRS-RGDLERAFRRYEQAMGT  275 (518)
T ss_pred             HHHHHHHHh-cccHhHHHHHHHHHHHH
Confidence            678999999 99999999999999754

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.94  E-value=0.031  Score=53.95  Aligned_cols=62  Identities=11%  Similarity=0.073  Sum_probs=32.1

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY  248 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~L  248 (277)
                      +.+.+--..|-++++.+|.|...|.--+.+-+....+++.|...|.+++..||++|..|+.+
T Consensus       121 k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey  182 (435)
T COG5191         121 KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY  182 (435)
T ss_pred             HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence            44445555555555555555555543222222244555555555555555555555555443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=94.88  E-value=0.093  Score=52.39  Aligned_cols=85  Identities=8%  Similarity=-0.035  Sum_probs=66.7

Q ss_pred             CCCcHHHHHHHHHHHHhC----CCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHH
Q 023753          186 NHGSSSTDAYYEKMIEAN----PGN--ALLLGNYARFLKEVRGDFAKAEELCGRAILANP------SDGNILSLYADLIW  253 (277)
Q Consensus       186 ~Gd~deAi~~yekALeld----P~n--~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP------~n~~al~~LA~ll~  253 (277)
                      .++++.|+++|++++.+.    ...  +...+.+|..|. ..+++++|+.|+++-++|.-      ....++..||..+-
T Consensus       248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt-ll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~  326 (639)
T KOG1130|consen  248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT-LLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN  326 (639)
T ss_pred             hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            367889999999876542    222  345667888887 67899999999999776643      24567888999988


Q ss_pred             HHcCCHHHHHHHHHHHHHh
Q 023753          254 QAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       254 ~~~Gd~deAi~~yekALel  272 (277)
                      . .+..++|+.+.++.+++
T Consensus       327 a-lg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  327 A-LGEHRKALYFAELHLRS  344 (639)
T ss_pred             h-hhhHHHHHHHHHHHHHH
Confidence            8 99999999999998876

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.85  E-value=0.15  Score=47.58  Aligned_cols=88  Identities=20%  Similarity=0.098  Sum_probs=61.5

Q ss_pred             CCcHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-H-----HHHHHHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN-I-----LSLYADLIWQ  254 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~------~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~-a-----l~~LA~ll~~  254 (277)
                      .+..+|+.++++||++.-+-.      ..+..+|.+|-....++++|+.+|++|-+.-..+-. .     +.-.|....+
T Consensus        87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~  166 (288)
T KOG1586|consen   87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ  166 (288)
T ss_pred             cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence            467788888888888865433      334577877753347999999999999887554321 1     2233454555


Q ss_pred             HcCCHHHHHHHHHHHHHhCCC
Q 023753          255 AHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       255 ~~Gd~deAi~~yekALeldPd  275 (277)
                       .++|.+|+..|++.....-+
T Consensus       167 -leqY~~Ai~iyeqva~~s~~  186 (288)
T KOG1586|consen  167 -LEQYSKAIDIYEQVARSSLD  186 (288)
T ss_pred             -HHHHHHHHHHHHHHHHHhcc
Confidence             78999999999998765433

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.78  E-value=0.42  Score=44.04  Aligned_cols=98  Identities=14%  Similarity=0.166  Sum_probs=75.9

Q ss_pred             hhHHHHHHhCCCcHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------
Q 023753          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPG----NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS------------  240 (277)
Q Consensus       177 ~yY~~m~e~~Gd~deAi~~yekALeldP~----n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~------------  240 (277)
                      ..+.++....|.++.|..++.++...++.    .+.+.+.++.+++ ..|+..+|+..++..+.....            
T Consensus       150 l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw-~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~  228 (352)
T PF02259_consen  150 LKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW-AQGEQEEAIQKLRELLKCRLSKNIDSISNAELK  228 (352)
T ss_pred             HHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhccccccHHHHh
Confidence            34556777789999999999999987632    4678888999998 789999999999988882111            


Q ss_pred             ----------------------CHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCC
Q 023753          241 ----------------------DGNILSLYADLIWQAH------KDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       241 ----------------------n~~al~~LA~ll~~~~------Gd~deAi~~yekALeldPdD  276 (277)
                                            .+.++..+|..... .      +++++++.+|++|++++|+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~  291 (352)
T PF02259_consen  229 SGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSW  291 (352)
T ss_pred             hccccccccccccchhhhhHHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhH
Confidence                                  13345556666656 5      88899999999999998863

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.78  E-value=0.17  Score=47.99  Aligned_cols=89  Identities=17%  Similarity=0.159  Sum_probs=74.5

Q ss_pred             CCCcHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCC--CCHHHHHHHHHHHHHHcCC
Q 023753          186 NHGSSSTDAYYEKMIEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRAIL----ANP--SDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       186 ~Gd~deAi~~yekALeld-P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALe----ldP--~n~~al~~LA~ll~~~~Gd  258 (277)
                      .+.|.-.+..|.+.++.+ |.++.....++.+-. +.||.+.|..||++.-+    ++.  .+..++.+.+.++.- .++
T Consensus       190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M-Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg-~nn  267 (366)
T KOG2796|consen  190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM-QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG-QNN  267 (366)
T ss_pred             chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec-ccc
Confidence            467778889999999998 678888999999875 89999999999995433    332  355678888999988 999


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 023753          259 ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       259 ~deAi~~yekALeldPdD  276 (277)
                      +.+|...|.+.+..+|.+
T Consensus       268 ~a~a~r~~~~i~~~D~~~  285 (366)
T KOG2796|consen  268 FAEAHRFFTEILRMDPRN  285 (366)
T ss_pred             hHHHHHHHhhccccCCCc
Confidence            999999999999999876

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=94.56  E-value=0.4  Score=48.69  Aligned_cols=67  Identities=18%  Similarity=0.239  Sum_probs=56.9

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l  251 (277)
                      +.+.+.+--..|.++++.+|+++..|.--|...++..-+.+.|.+.|.++|+.+|+++..|..+-.+
T Consensus       117 k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrm  183 (568)
T KOG2396|consen  117 KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRM  183 (568)
T ss_pred             HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence            4455788889999999999999999998887777665669999999999999999999987765443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=94.36  E-value=0.26  Score=51.40  Aligned_cols=97  Identities=22%  Similarity=0.275  Sum_probs=75.1

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHH
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP--SDGNILSLYADLIWQA  255 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP--~n~~al~~LA~ll~~~  255 (277)
                      +|..+.+.-|-++...+.|+++|.+.---|....|||.+|. ...-+++|.+.|++-|.+-+  .-.+.|..|-..+...
T Consensus       482 ~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE-eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r  560 (835)
T KOG2047|consen  482 MYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE-EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR  560 (835)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence            55566677788999999999999999999999999999885 67778999999999988864  4445555443222221


Q ss_pred             --cCCHHHHHHHHHHHHHhCCC
Q 023753          256 --HKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       256 --~Gd~deAi~~yekALeldPd  275 (277)
                        .-..+.|..+|++||...|-
T Consensus       561 ygg~klEraRdLFEqaL~~Cpp  582 (835)
T KOG2047|consen  561 YGGTKLERARDLFEQALDGCPP  582 (835)
T ss_pred             hcCCCHHHHHHHHHHHHhcCCH
Confidence              34678999999999988773

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.19  E-value=0.37  Score=46.71  Aligned_cols=94  Identities=7%  Similarity=0.033  Sum_probs=72.6

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-----DGNILSLYADLIWQ  254 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~-n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~-----n~~al~~LA~ll~~  254 (277)
                      ..+..+|-+..|.++++-.+.+||. ||.....+-.+|..+.++|+--++.++........     -|...+..|.+++.
T Consensus       111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~  190 (360)
T PF04910_consen  111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR  190 (360)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence            5555679999999999999999999 88777766777777888898888888776552111     23455667777777


Q ss_pred             HcCCH---------------HHHHHHHHHHHHhCCC
Q 023753          255 AHKDA---------------SRAESYFDQAVKSAPD  275 (277)
Q Consensus       255 ~~Gd~---------------deAi~~yekALeldPd  275 (277)
                       .++.               ++|...+.+|+..-|.
T Consensus       191 -l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  191 -LEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             -hcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence             6776               8999999999988773

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.18  E-value=0.62  Score=42.87  Aligned_cols=99  Identities=9%  Similarity=-0.053  Sum_probs=74.0

Q ss_pred             hhhHHHHHHhCCCcHHHHHHHHHHHHh-CCC---------------------------------CHHHHHHHHHHHHHHc
Q 023753          176 SGSNNNYSNNNHGSSSTDAYYEKMIEA-NPG---------------------------------NALLLGNYARFLKEVR  221 (277)
Q Consensus       176 ~~yY~~m~e~~Gd~deAi~~yekALel-dP~---------------------------------n~~al~nLA~lL~e~~  221 (277)
                      ...+.+++-..|+..+|+..++..+.. ...                                 -+.++..+|.+.. ..
T Consensus       187 ~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~-~~  265 (352)
T PF02259_consen  187 FLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD-EL  265 (352)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH-hh
Confidence            344567777889999999999888881 110                                 0245666776664 45


Q ss_pred             ------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----------------HHHHHHHHHHHHHhCCC
Q 023753          222 ------GDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD----------------ASRAESYFDQAVKSAPD  275 (277)
Q Consensus       222 ------Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd----------------~deAi~~yekALeldPd  275 (277)
                            .+.+++..+|++|++++|....+++.+|.++......                ...|+..|-+|+...+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                  7899999999999999999999999999887652111                13588999999988876

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.16  E-value=0.17  Score=51.51  Aligned_cols=85  Identities=22%  Similarity=0.203  Sum_probs=56.8

Q ss_pred             CCCcHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHH---cC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 023753          186 NHGSSSTDAYYEKMIE-----ANPGNALLLGNYARFLKEV---RG-DFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (277)
Q Consensus       186 ~Gd~deAi~~yekALe-----ldP~n~~al~nLA~lL~e~---~G-d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~  256 (277)
                      ..|.++|+.+|++|..     ..-.++.+.+.+|.+|...   .. |+..|..+|.+|.+..  ++.+.+.+|.++..-.
T Consensus       262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~  339 (552)
T KOG1550|consen  262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGT  339 (552)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCC
Confidence            3577888888888876     1112556777788877520   12 6788888888887764  4455666777776622


Q ss_pred             --CCHHHHHHHHHHHHHh
Q 023753          257 --KDASRAESYFDQAVKS  272 (277)
Q Consensus       257 --Gd~deAi~~yekALel  272 (277)
                        .|+.+|.++|..|.+.
T Consensus       340 ~~~d~~~A~~yy~~Aa~~  357 (552)
T KOG1550|consen  340 KERDYRRAFEYYSLAAKA  357 (552)
T ss_pred             ccccHHHHHHHHHHHHHc
Confidence              3567888888887643

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.07  E-value=0.46  Score=36.87  Aligned_cols=54  Identities=17%  Similarity=0.110  Sum_probs=29.5

Q ss_pred             CCcHHHHHHHHHHHHhCCC----C-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          187 HGSSSTDAYYEKMIEANPG----N-----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD  241 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~----n-----~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n  241 (277)
                      +++.+|++.+.+.+..-..    .     ..++.++|.+.. ..|++++|+..+++||.+....
T Consensus        12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen   12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHR-RFGHYEEALQALEEAIRLAREN   74 (94)
T ss_pred             CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHH
Confidence            5666665555555443211    1     244555565554 5566666666666666665544

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=93.99  E-value=0.048  Score=54.62  Aligned_cols=61  Identities=18%  Similarity=0.019  Sum_probs=54.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          214 ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       214 A~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      |.-.. ..++|+.|+..|-+||+++|+++.++.+-+.+++. .++|..|+.-+.+||+++|..
T Consensus        11 an~~l-~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK-~e~~~~Al~Da~kaie~dP~~   71 (476)
T KOG0376|consen   11 ANEAL-KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK-VESFGGALHDALKAIELDPTY   71 (476)
T ss_pred             Hhhhc-ccchHHHHHHHHHHHHhcCCcceeeechhhhhhee-echhhhHHHHHHhhhhcCchh
Confidence            44343 57899999999999999999999999999988888 999999999999999999964

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=93.92  E-value=1  Score=42.69  Aligned_cols=52  Identities=15%  Similarity=0.192  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          224 FAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       224 ~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      .+..+.+|++||+.+|++...+..+-.++.+ ..+.++..+-+++++..+|++
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~-~~~~~~l~~~we~~l~~~~~~   98 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEK-VWDSEKLAKKWEELLFKNPGS   98 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCCCC
Confidence            4677889999999999998888887777777 778888888999999998876

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.84  E-value=0.14  Score=50.45  Aligned_cols=87  Identities=16%  Similarity=0.011  Sum_probs=70.5

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHH
Q 023753          185 NNHGSSSTDAYYEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILANPS----------DGNILSLY  248 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP~n~------~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~----------n~~al~~L  248 (277)
                      ..+.+++++++|++|+.+.-++.      .+...++.++. ..+|+++|+.+..+|+++-..          ...+++.+
T Consensus       134 gls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~-~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhm  212 (518)
T KOG1941|consen  134 GLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA-QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHM  212 (518)
T ss_pred             hHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH-HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHH
Confidence            35788999999999998865543      46778888776 789999999999999987432          24567888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753          249 ADLIWQAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       249 A~ll~~~~Gd~deAi~~yekALeld  273 (277)
                      +..+.. +|+.-.|.++.+.|.++.
T Consensus       213 aValR~-~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  213 AVALRL-LGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             HHHHHH-hcccccHHHHHHHHHHHH
Confidence            888887 999999999999998763

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=93.23  E-value=1.1  Score=38.76  Aligned_cols=73  Identities=15%  Similarity=0.086  Sum_probs=65.4

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ..+.++++..+..+--+.|+.+.+...-++++. ..|++.+|+..|+....-.+..+.....++.|++. ++|.+
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i-~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a-l~Dp~   95 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLI-ARGNYDEAARILRELLSSAGAPPYGKALLALCLNA-KGDAE   95 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHHHH-HcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh-cCChH
Confidence            578889999999888899999999888888775 89999999999999999998989998999999988 88865

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=93.15  E-value=0.095  Score=54.18  Aligned_cols=90  Identities=11%  Similarity=0.030  Sum_probs=78.7

Q ss_pred             HhCCCcHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 023753          184 NNNHGSSSTDAYYEKMIEANPGNA--LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR  261 (277)
Q Consensus       184 e~~Gd~deAi~~yekALeldP~n~--~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de  261 (277)
                      ..+|+..+|..+|..|+-+-|...  .++..+|.+|. ..|...+|--.+..|+.-.|....-++.++.++.+ .+++..
T Consensus       224 R~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~-RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~am-l~~~N~  301 (886)
T KOG4507|consen  224 RIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLH-RAGFSADAAVILHAALDDADFFTSNYYTLGNIYAM-LGEYNH  301 (886)
T ss_pred             HHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHH-HcccccchhheeehhccCCccccccceeHHHHHHH-Hhhhhh
Confidence            357999999999999999877654  46778899887 89999999999999999888877778999999998 999999


Q ss_pred             HHHHHHHHHHhCCC
Q 023753          262 AESYFDQAVKSAPD  275 (277)
Q Consensus       262 Ai~~yekALeldPd  275 (277)
                      ...+|+.|.+..|.
T Consensus       302 S~~~ydha~k~~p~  315 (886)
T KOG4507|consen  302 SVLCYDHALQARPG  315 (886)
T ss_pred             hhhhhhhhhccCcc
Confidence            99999999988874

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.03  E-value=0.6  Score=46.29  Aligned_cols=89  Identities=13%  Similarity=0.185  Sum_probs=71.0

Q ss_pred             CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---HHHH
Q 023753          188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD---ASRA  262 (277)
Q Consensus       188 d~deAi~~yekALeldP~n~~al~nLA~lL~e~~G--d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd---~deA  262 (277)
                      -+++-+.+...+|+.+|+...+|+...+++. +..  ++..-++.+++++++||.|..+|.+-=.++-+....   ..+=
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~-~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E  168 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQ-KNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE  168 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence            4567788999999999999999999999886 444  478899999999999999988877655555442333   5666


Q ss_pred             HHHHHHHHHhCCCCC
Q 023753          263 ESYFDQAVKSAPDDW  277 (277)
Q Consensus       263 i~~yekALeldPdD~  277 (277)
                      +++..++|..++.|+
T Consensus       169 l~ftt~~I~~nfSNY  183 (421)
T KOG0529|consen  169 LEFTTKLINDNFSNY  183 (421)
T ss_pred             HHHHHHHHhccchhh
Confidence            889999998888764

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.00  E-value=0.18  Score=51.29  Aligned_cols=90  Identities=14%  Similarity=0.079  Sum_probs=63.8

Q ss_pred             HHHHhCCCcHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hC----
Q 023753          181 NYSNNNHGSSSTDAYYEKM-IEANPG--------NALLLGNYARFLKEVRGDFAKAEELCGRAIL---------AN----  238 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekA-LeldP~--------n~~al~nLA~lL~e~~Gd~eeA~e~~ekALe---------ld----  238 (277)
                      +.+...|++.+|.+.+... |...|.        .-.+|+|+|.+.+ ..+.|..+..+|.+|++         +.    
T Consensus       248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~-~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~  326 (696)
T KOG2471|consen  248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY-QLGCYQASSVLFLKALRNSCSQLRNGLKPAKT  326 (696)
T ss_pred             HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEee-ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence            4455567788877776544 344444        1245778887776 67888888888888885         11    


Q ss_pred             -----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          239 -----PSDGNILSLYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       239 -----P~n~~al~~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                           ....+++|+.|..|+. .|+...|-++|.+|+..
T Consensus       327 ~tls~nks~eilYNcG~~~Lh-~grPl~AfqCf~~av~v  364 (696)
T KOG2471|consen  327 FTLSQNKSMEILYNCGLLYLH-SGRPLLAFQCFQKAVHV  364 (696)
T ss_pred             eehhcccchhhHHhhhHHHHh-cCCcHHHHHHHHHHHHH
Confidence                 1245678888888888 88888888888888865

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=92.98  E-value=0.99  Score=43.78  Aligned_cols=77  Identities=23%  Similarity=0.330  Sum_probs=59.4

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCCHH---HHHHH
Q 023753          198 KMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------------------------NPSDGN---ILSLY  248 (277)
Q Consensus       198 kALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel--------------------------dP~n~~---al~~L  248 (277)
                      ..|+.+|-+...+..++.++. .+||++.|.+++++||-.                          .+.|..   +++.+
T Consensus        31 ~ll~~~PyHidtLlqls~v~~-~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~  109 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYR-QQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY  109 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence            445778999999999999887 789999999999988632                          122322   34455


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Q 023753          249 ADLIWQAHKDASRAESYFDQAVKSAPD-D  276 (277)
Q Consensus       249 A~ll~~~~Gd~deAi~~yekALeldPd-D  276 (277)
                      ...+.+ .|.+..|.++.+-.+.++|. |
T Consensus       110 i~~L~~-RG~~rTAlE~~KlLlsLdp~~D  137 (360)
T PF04910_consen  110 IQSLGR-RGCWRTALEWCKLLLSLDPDED  137 (360)
T ss_pred             HHHHHh-cCcHHHHHHHHHHHHhcCCCCC
Confidence            666666 89999999999999999998 5

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=92.92  E-value=1  Score=40.97  Aligned_cols=80  Identities=18%  Similarity=0.127  Sum_probs=63.9

Q ss_pred             cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--------
Q 023753          189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEV---RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK--------  257 (277)
Q Consensus       189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~---~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G--------  257 (277)
                      ...|+..|++|-...  ++.+.+++|.+|..-   ..|+.+|..+|.+|.+...  ..+++.++ +++. .+        
T Consensus       171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~-~g~g~~~~~~  244 (292)
T COG0790         171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYL-NGEGVKKAAF  244 (292)
T ss_pred             HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHh-cCCCchhhhh
Confidence            347999999998877  788888999877521   2389999999999999887  88888888 5554 45        


Q ss_pred             -------CHHHHHHHHHHHHHhCC
Q 023753          258 -------DASRAESYFDQAVKSAP  274 (277)
Q Consensus       258 -------d~deAi~~yekALeldP  274 (277)
                             +...|..++.++....+
T Consensus       245 ~~~~~~~~~~~a~~~~~~~~~~~~  268 (292)
T COG0790         245 LTAAKEEDKKQALEWLQKACELGF  268 (292)
T ss_pred             cccccCCCHHHHHHHHHHHHHcCC
Confidence                   88899999998876654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.75  E-value=1.4  Score=44.48  Aligned_cols=50  Identities=16%  Similarity=0.234  Sum_probs=45.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023753          216 FLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQ  268 (277)
Q Consensus       216 lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yek  268 (277)
                      +++ .+|+|.++.-|..-..+++| .+.++..+|.+++. ..+|++|..++..
T Consensus       471 yLy-sqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e-~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  471 YLY-SQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLME-NKRYQEAWEYLQK  520 (549)
T ss_pred             HHH-hcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH-HhhHHHHHHHHHh
Confidence            354 67899999999999999999 99999999999999 9999999999875

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=92.66  E-value=0.43  Score=46.44  Aligned_cols=67  Identities=12%  Similarity=-0.040  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG----NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       208 ~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~----~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ..+-.-|+-|+ +.++|..|+.+|.+.|+.+-.|+    ..|.+-|.+.+. .++|..|+.-..+|+.++|.+
T Consensus        82 en~KeeGN~~f-K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h  152 (390)
T KOG0551|consen   82 ENYKEEGNEYF-KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTH  152 (390)
T ss_pred             HHHHHHhHHHH-HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcch
Confidence            44455678787 78999999999999999876544    446777888888 899999999999999999975

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.57  E-value=0.41  Score=31.48  Aligned_cols=32  Identities=13%  Similarity=0.020  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 023753          244 ILSLYADLIWQAHKDASRAESY--FDQAVKSAPDD  276 (277)
Q Consensus       244 al~~LA~ll~~~~Gd~deAi~~--yekALeldPdD  276 (277)
                      .++.+|..+.+ +|++++|+.+  |+-+..++|.|
T Consensus         3 ~~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    3 YLYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcccC
Confidence            34455555555 5555555555  33555555543

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=92.53  E-value=1.3  Score=44.28  Aligned_cols=88  Identities=17%  Similarity=0.115  Sum_probs=65.8

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFL-KEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL-~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      +.....|+++.|.+-|+-++. ||.--. +...+.++ .+..|+++.|..|.++|....|.-+.+....-..... .||+
T Consensus       128 Qaal~eG~~~~Ar~kfeAMl~-dPEtRl-lGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~-~gdW  204 (531)
T COG3898         128 QAALLEGDYEDARKKFEAMLD-DPETRL-LGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCA-AGDW  204 (531)
T ss_pred             HHHHhcCchHHHHHHHHHHhc-ChHHHH-HhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHh-cCCh
Confidence            344456999999999997765 554332 22223222 2367899999999999999999999887766666667 8999


Q ss_pred             HHHHHHHHHHHH
Q 023753          260 SRAESYFDQAVK  271 (277)
Q Consensus       260 deAi~~yekALe  271 (277)
                      +.|+++.+...+
T Consensus       205 d~AlkLvd~~~~  216 (531)
T COG3898         205 DGALKLVDAQRA  216 (531)
T ss_pred             HHHHHHHHHHHH
Confidence            999999987664

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=92.41  E-value=0.54  Score=44.21  Aligned_cols=56  Identities=20%  Similarity=0.067  Sum_probs=53.4

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       220 ~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ..++++.|..+.++.+.++|+++.-+..-|.+|.+ .+.+.-|++-+...++.-|++
T Consensus       193 ~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~  248 (269)
T COG2912         193 RELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDD  248 (269)
T ss_pred             HhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCc
Confidence            67899999999999999999999999999999999 999999999999999999986

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.40  E-value=1  Score=45.94  Aligned_cols=90  Identities=16%  Similarity=0.049  Sum_probs=73.7

Q ss_pred             CCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHHc
Q 023753          187 HGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILAN---PSD----GNILSLYADLIWQAH  256 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld---P~n----~~al~~LA~ll~~~~  256 (277)
                      .++.+++++++..+...|.+   +..+..+|.+++...++++-|..++++|..+-   |+.    .+++..++.++.+..
T Consensus        23 PkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~  102 (629)
T KOG2300|consen   23 PKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLA  102 (629)
T ss_pred             hhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhc
Confidence            37889999999999999876   35577889888878999999999999999875   333    345677889988844


Q ss_pred             CCHHHHHHHHHHHHHhCCCC
Q 023753          257 KDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       257 Gd~deAi~~yekALeldPdD  276 (277)
                      ..+..|...+++||++..+.
T Consensus       103 ~s~~~~KalLrkaielsq~~  122 (629)
T KOG2300|consen  103 QSFPPAKALLRKAIELSQSV  122 (629)
T ss_pred             CCCchHHHHHHHHHHHhcCC
Confidence            58899999999999987553

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.28  E-value=1  Score=45.85  Aligned_cols=82  Identities=15%  Similarity=0.027  Sum_probs=63.9

Q ss_pred             CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHH
Q 023753          188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR--GDFAKAEELCGRAILANPSDGNILSLYADLIWQA---HKDASRA  262 (277)
Q Consensus       188 d~deAi~~yekALeldP~n~~al~nLA~lL~e~~--Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~---~Gd~deA  262 (277)
                      ++..|..+|.+|-++..  +.+.+.+|.++..-.  .|+.+|.++|.+|.+.  .+..+++.+|.+|..-   ..+...|
T Consensus       308 d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A  383 (552)
T KOG1550|consen  308 DYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA  383 (552)
T ss_pred             cHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence            56789999999987765  555677787665222  4678999999999774  5788889999988761   2378999


Q ss_pred             HHHHHHHHHhC
Q 023753          263 ESYFDQAVKSA  273 (277)
Q Consensus       263 i~~yekALeld  273 (277)
                      ..+|.+|.+..
T Consensus       384 ~~~~k~aA~~g  394 (552)
T KOG1550|consen  384 FAYYKKAAEKG  394 (552)
T ss_pred             HHHHHHHHHcc
Confidence            99999999887

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=92.10  E-value=1.1  Score=48.14  Aligned_cols=72  Identities=17%  Similarity=0.079  Sum_probs=45.2

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      .|..++|..+++..-..-+++-..+..+-.+|. ..+++++|..+|++|+..+|. -..++.+=.+|.+ .++|.
T Consensus        56 ~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~-d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR-~~~yk  127 (932)
T KOG2053|consen   56 LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR-DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR-EKSYK  127 (932)
T ss_pred             hcCchhHHHHHhhhccCCCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH-HHHHH
Confidence            466677776555555555666666666666665 567777777777777777776 5555555555555 45554

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=92.00  E-value=1.6  Score=45.04  Aligned_cols=96  Identities=16%  Similarity=0.109  Sum_probs=81.1

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHc
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN-PSDGNILSLYADLIWQAH  256 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld-P~n~~al~~LA~ll~~~~  256 (277)
                      +|.......|+++.....|++++.--.....+|.+|+..+. ..|+..-|...+.+|.++. |.-+..+...|.+--. .
T Consensus       302 ~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~-~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~-~  379 (577)
T KOG1258|consen  302 YYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWME-SSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES-N  379 (577)
T ss_pred             HHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH-HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh-h
Confidence            44445556799999999999999999999999999999886 7799999999999988875 6677777777777766 8


Q ss_pred             CCHHHHHHHHHHHHHhCCC
Q 023753          257 KDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       257 Gd~deAi~~yekALeldPd  275 (277)
                      |+++.|..+|++..+--|+
T Consensus       380 ~n~~~A~~~lq~i~~e~pg  398 (577)
T KOG1258|consen  380 GNFDDAKVILQRIESEYPG  398 (577)
T ss_pred             ccHHHHHHHHHHHHhhCCc
Confidence            9999999999999877665

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.78  E-value=2.2  Score=44.18  Aligned_cols=97  Identities=13%  Similarity=0.120  Sum_probs=71.1

Q ss_pred             hhhHHHHHH--hCCCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHhCCCCHHHHHH
Q 023753          176 SGSNNNYSN--NNHGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRA-----ILANPSDGNILSL  247 (277)
Q Consensus       176 ~~yY~~m~e--~~Gd~deAi~~yekALeldP~-n~~al~nLA~lL~e~~Gd~eeA~e~~ekA-----LeldP~n~~al~~  247 (277)
                      ..-|+.|..  ..|-+..|.++++-.+.++|. ||.+...+..+|.....+|+==++.++.+     +..-|+.++.+ .
T Consensus       343 L~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~-A  421 (665)
T KOG2422|consen  343 LALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSL-A  421 (665)
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHH-H
Confidence            334444433  458899999999999999999 99887777777776778887777777766     44456665543 4


Q ss_pred             HHHHHHHHcCC---HHHHHHHHHHHHHhCC
Q 023753          248 YADLIWQAHKD---ASRAESYFDQAVKSAP  274 (277)
Q Consensus       248 LA~ll~~~~Gd---~deAi~~yekALeldP  274 (277)
                      +|.+|.. ..+   .+.|...+.+|+..-|
T Consensus       422 lA~f~l~-~~~~~~rqsa~~~l~qAl~~~P  450 (665)
T KOG2422|consen  422 LARFFLR-KNEEDDRQSALNALLQALKHHP  450 (665)
T ss_pred             HHHHHHh-cCChhhHHHHHHHHHHHHHhCc
Confidence            6667766 333   5689999999999887

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.69  E-value=0.98  Score=42.69  Aligned_cols=80  Identities=18%  Similarity=0.012  Sum_probs=60.7

Q ss_pred             cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023753          189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQ  268 (277)
Q Consensus       189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yek  268 (277)
                      +..-+...+++++.  ....++..++..+. ..++++.++..+++.+..+|.+-.+|..+-.+|+. .|+...|+..|++
T Consensus       137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~-~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~~  212 (280)
T COG3629         137 FDEWVLEQRRALEE--LFIKALTKLAEALI-ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYRQ  212 (280)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHHH
Confidence            33434444444332  23456777777775 78899999999999999999999988888888888 8999999999988


Q ss_pred             HHHh
Q 023753          269 AVKS  272 (277)
Q Consensus       269 ALel  272 (277)
                      .-..
T Consensus       213 l~~~  216 (280)
T COG3629         213 LKKT  216 (280)
T ss_pred             HHHH
Confidence            7653

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.58  E-value=0.034  Score=53.87  Aligned_cols=56  Identities=29%  Similarity=0.305  Sum_probs=53.2

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       220 ~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ..|.+++|+++|.+||+++|..+..|..-+.+++. +++...|+.-|..|++++|+.
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Ds  181 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDS  181 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCccc
Confidence            46889999999999999999999999999999999 999999999999999999974

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=91.36  E-value=0.5  Score=28.11  Aligned_cols=29  Identities=28%  Similarity=0.413  Sum_probs=17.4

Q ss_pred             CcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753          188 GSSSTDAYYEKMIEANPGNALLLGNYARF  216 (277)
Q Consensus       188 d~deAi~~yekALeldP~n~~al~nLA~l  216 (277)
                      +.+.|...|++++...|.++.+|..|+.+
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            34556666666666666666666665543

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=91.15  E-value=0.21  Score=48.39  Aligned_cols=84  Identities=5%  Similarity=0.099  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753          192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVK  271 (277)
Q Consensus       192 Ai~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALe  271 (277)
                      -+-.|.++-...|+++..|..|+.+.. +.+-|.+--..|.+++...|.|.+.|..-+..-+...++++.|...|.++++
T Consensus        92 ~~f~~~R~tnkff~D~k~w~~y~~Y~~-k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR  170 (435)
T COG5191          92 KIFELYRSTNKFFNDPKIWSQYAAYVI-KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR  170 (435)
T ss_pred             eeEeeehhhhcCCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhc
Confidence            344566777778999999999998664 7888999999999999999999999887444433338999999999999999


Q ss_pred             hCCCC
Q 023753          272 SAPDD  276 (277)
Q Consensus       272 ldPdD  276 (277)
                      ++|++
T Consensus       171 ~N~~~  175 (435)
T COG5191         171 MNSRS  175 (435)
T ss_pred             cCCCC
Confidence            99986

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.95  E-value=0.78  Score=30.13  Aligned_cols=33  Identities=12%  Similarity=0.057  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 023753          208 LLLGNYARFLKEVRGDFAKAEEL--CGRAILANPSD  241 (277)
Q Consensus       208 ~al~nLA~lL~e~~Gd~eeA~e~--~ekALeldP~n  241 (277)
                      +.++.+|..++ .+|++++|+.+  |+-+..+++.|
T Consensus         2 e~~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFY-QKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhcccC
Confidence            56778888887 79999999999  55888888865

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.71  E-value=1.4  Score=34.17  Aligned_cols=53  Identities=19%  Similarity=0.165  Sum_probs=43.3

Q ss_pred             HcCCHHHHHHHHHHHHHhCCC----C-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753          220 VRGDFAKAEELCGRAILANPS----D-----GNILSLYADLIWQAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       220 ~~Gd~eeA~e~~ekALeldP~----n-----~~al~~LA~ll~~~~Gd~deAi~~yekALeld  273 (277)
                      ..+||.+|.+.+.+.+.....    .     ..++.++|.+... .|++++|+..++.||++.
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHH
Confidence            579999998888777765432    2     4677889999998 999999999999999874

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.48  E-value=0.34  Score=29.07  Aligned_cols=23  Identities=17%  Similarity=0.147  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 023753          244 ILSLYADLIWQAHKDASRAESYFD  267 (277)
Q Consensus       244 al~~LA~ll~~~~Gd~deAi~~ye  267 (277)
                      +++.+|.+++. .|++++|+..++
T Consensus         3 a~~~la~~~~~-~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLA-QGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHh
Confidence            45556666665 666666665554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=90.44  E-value=0.95  Score=38.89  Aligned_cols=65  Identities=14%  Similarity=0.115  Sum_probs=51.3

Q ss_pred             CCcHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023753          187 HGSSSTDAYYEKMIE-ANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (277)
Q Consensus       187 Gd~deAi~~yekALe-ldP~n-~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll  252 (277)
                      .+..+.+.+++..++ -.|.. -+.++-+|.-++ +.++|++|+.|++..++.+|+|.++...--.+.
T Consensus        49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~y-RlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ie  115 (149)
T KOG3364|consen   49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHY-RLKEYSKSLRYVDALLETEPNNRQALELKETIE  115 (149)
T ss_pred             HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHH-HHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence            567789999999997 55543 356666777676 789999999999999999999999876544433

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=90.40  E-value=0.85  Score=27.05  Aligned_cols=31  Identities=26%  Similarity=0.431  Sum_probs=27.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023753          222 GDFAKAEELCGRAILANPSDGNILSLYADLI  252 (277)
Q Consensus       222 Gd~eeA~e~~ekALeldP~n~~al~~LA~ll  252 (277)
                      +++++|...|++++...|.++.+|..++.+.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e   31 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEFE   31 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            4678999999999999999999998887653

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.38  E-value=3.3  Score=36.09  Aligned_cols=89  Identities=12%  Similarity=0.010  Sum_probs=61.4

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHH----HHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANP--SDGNILS----LYAD  250 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP--~n~~al~----~LA~  250 (277)
                      ...|...|++++|+++|.++.+..-..   ...++++..+.. ..+|+..+..++.+|-.+--  .+.....    .-|.
T Consensus        43 ~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i-~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL  121 (177)
T PF10602_consen   43 ADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAI-FFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGL  121 (177)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            355566799999999999988765443   245556666554 57899999999998876532  3333322    2355


Q ss_pred             HHHHHcCCHHHHHHHHHHHH
Q 023753          251 LIWQAHKDASRAESYFDQAV  270 (277)
Q Consensus       251 ll~~~~Gd~deAi~~yekAL  270 (277)
                      .++. .++|.+|...|-.++
T Consensus       122 ~~l~-~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  122 ANLA-QRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHH-hchHHHHHHHHHccC
Confidence            5555 899999998887664

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=90.37  E-value=2  Score=36.45  Aligned_cols=85  Identities=15%  Similarity=0.081  Sum_probs=60.0

Q ss_pred             CCCcHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHH---
Q 023753          186 NHGSSSTDAYYEKMIEANPGN------------ALLLGNYARFLKEVRGDFAKAEELCGRAIL-------ANPSDGN---  243 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n------------~~al~nLA~lL~e~~Gd~eeA~e~~ekALe-------ldP~n~~---  243 (277)
                      .+-|++|...|++|+++...-            +..+..|+..+. ..|+|++++...++|+.       ++.+...   
T Consensus        22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~-~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI  100 (144)
T PF12968_consen   22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALA-GLGRYDECLQSADRALRYFNRRGELHQDEGKLWI  100 (144)
T ss_dssp             HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence            478999999999999874322            345667777776 78999887777776664       4444433   


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          244 -ILSLYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       244 -al~~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                       +.++-|..+.. .|+.++|+..|+.+.+.
T Consensus       101 aaVfsra~Al~~-~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen  101 AAVFSRAVALEG-LGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-cCChHHHHHHHHHHHHH
Confidence             34556777777 99999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=90.36  E-value=1.5  Score=45.20  Aligned_cols=72  Identities=21%  Similarity=0.215  Sum_probs=54.0

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753          197 EKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVK  271 (277)
Q Consensus       197 ekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALe  271 (277)
                      ++-|+.||.|..+|+.|-.-+.  .+-++++.+.|++.+...|..+.+|..+..-.+. .++|+.-+.+|.++|.
T Consensus        10 ~~rie~nP~di~sw~~lire~q--t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~-skdfe~VEkLF~RCLv   81 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQ--TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELA-SKDFESVEKLFSRCLV   81 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHc--cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Confidence            6677778888888887776543  4477888888888888888888888777777776 7788877777777764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=90.24  E-value=2.1  Score=46.33  Aligned_cols=61  Identities=20%  Similarity=0.194  Sum_probs=48.9

Q ss_pred             hhhHHHHHHhCCCcHHHHHHHHHHH---------------------HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023753          176 SGSNNNYSNNNHGSSSTDAYYEKMI---------------------EANPGNALLLGNYARFLKEVRGDFAKAEELCGRA  234 (277)
Q Consensus       176 ~~yY~~m~e~~Gd~deAi~~yekAL---------------------eldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekA  234 (277)
                      ..+|+++++..|+.+.|+.+|..|-                     .....|-.+-+.+|+.| +..|++.+|+.+|.+|
T Consensus       915 ~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~Y-En~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  915 YSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMY-ENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHh-hhhHHHHHHHHHHHHH
Confidence            3466788888999999999998753                     33566778899999988 5899999999999887


Q ss_pred             HHh
Q 023753          235 ILA  237 (277)
Q Consensus       235 Lel  237 (277)
                      -..
T Consensus       994 qaf  996 (1416)
T KOG3617|consen  994 QAF  996 (1416)
T ss_pred             HHH
Confidence            544

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=90.24  E-value=1.4  Score=46.15  Aligned_cols=92  Identities=13%  Similarity=0.150  Sum_probs=75.5

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPG------------------NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG  242 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~------------------n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~  242 (277)
                      .|-....+++.|..+.++|..+-..                  ...+|..|+.+. +..|-++.....|++.|.+.---|
T Consensus       433 emElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle-Es~gtfestk~vYdriidLriaTP  511 (835)
T KOG2047|consen  433 EMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE-ESLGTFESTKAVYDRIIDLRIATP  511 (835)
T ss_pred             HHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHhcCCH
Confidence            4444557888888888888765222                  124678888866 588999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       243 ~al~~LA~ll~~~~Gd~deAi~~yekALeldP  274 (277)
                      ....|+|.++-+ ..-+++|-+.|++.|.+.|
T Consensus       512 qii~NyAmfLEe-h~yfeesFk~YErgI~LFk  542 (835)
T KOG2047|consen  512 QIIINYAMFLEE-HKYFEESFKAYERGISLFK  542 (835)
T ss_pred             HHHHHHHHHHHh-hHHHHHHHHHHHcCCccCC
Confidence            999999999988 8899999999999988754

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.03  E-value=1  Score=45.95  Aligned_cols=68  Identities=12%  Similarity=0.028  Sum_probs=58.1

Q ss_pred             CCCcHHHHHHHHHHHH-----h----CC---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 023753          186 NHGSSSTDAYYEKMIE-----A----NP---------GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSL  247 (277)
Q Consensus       186 ~Gd~deAi~~yekALe-----l----dP---------~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~  247 (277)
                      .+.|..+..+|++|++     +    .|         ..-.++||.|..|. ..|+.-.|.+||.+|+..--.||..|..
T Consensus       296 ~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~L-h~grPl~AfqCf~~av~vfh~nPrlWLR  374 (696)
T KOG2471|consen  296 LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYL-HSGRPLLAFQCFQKAVHVFHRNPRLWLR  374 (696)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHH-hcCCcHHHHHHHHHHHHHHhcCcHHHHH
Confidence            4788899999999996     1    11         22468999998876 8999999999999999999999999999


Q ss_pred             HHHHHHH
Q 023753          248 YADLIWQ  254 (277)
Q Consensus       248 LA~ll~~  254 (277)
                      +|.+++.
T Consensus       375 lAEcCim  381 (696)
T KOG2471|consen  375 LAECCIM  381 (696)
T ss_pred             HHHHHHH
Confidence            9999876

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.91  E-value=7.5  Score=35.11  Aligned_cols=84  Identities=19%  Similarity=0.192  Sum_probs=59.3

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------
Q 023753          186 NHGSSSTDAYYEKMIEANPGNA--LLLGNYARFLKEVRGDFAKAEELCGRAILA--------------------------  237 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~--~al~nLA~lL~e~~Gd~eeA~e~~ekALel--------------------------  237 (277)
                      .+..++|+..|...-+-.-.+.  .+....|.++. ..|+-..|+.+|..+-..                          
T Consensus        71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a-~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~  149 (221)
T COG4649          71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLA-QKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD  149 (221)
T ss_pred             cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHh-hcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence            3778889888887766665543  44556666665 788888888888876543                          


Q ss_pred             -------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753          238 -------------NPSDGNILSLYADLIWQAHKDASRAESYFDQAVK  271 (277)
Q Consensus       238 -------------dP~n~~al~~LA~ll~~~~Gd~deAi~~yekALe  271 (277)
                                   +|-...+.-.||...|+ .|++.+|..+|.+...
T Consensus       150 dV~srvepLa~d~n~mR~sArEALglAa~k-agd~a~A~~~F~qia~  195 (221)
T COG4649         150 DVSSRVEPLAGDGNPMRHSAREALGLAAYK-AGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHhhhccCCCChhHHHHHHHHhHHHHh-ccchHHHHHHHHHHHc
Confidence                         23333444556777788 8999999999988764

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=89.81  E-value=4.1  Score=37.58  Aligned_cols=89  Identities=16%  Similarity=0.097  Sum_probs=57.6

Q ss_pred             hCCCcHHHHHHHHHHHHhC----CCCH----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CC---CC-------
Q 023753          185 NNHGSSSTDAYYEKMIEAN----PGNA----LLLGNYARFLKEVRG-DFAKAEELCGRAILA----NP---SD-------  241 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeld----P~n~----~al~nLA~lL~e~~G-d~eeA~e~~ekALel----dP---~n-------  241 (277)
                      .+|+++.|..+|.|+-...    |+..    ..++++|.-+. ..+ +++.|...+++|+++    .+   ..       
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            4588899999998886544    3332    45667776665 567 899999999998887    22   11       


Q ss_pred             HHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCC
Q 023753          242 GNILSLYADLIWQAHKDAS---RAESYFDQAVKSAPD  275 (277)
Q Consensus       242 ~~al~~LA~ll~~~~Gd~d---eAi~~yekALeldPd  275 (277)
                      ..++..++.+|+. .+.++   +|+.+++.+-...|+
T Consensus        84 ~~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~  119 (278)
T PF08631_consen   84 LSILRLLANAYLE-WDTYESVEKALNALRLLESEYGN  119 (278)
T ss_pred             HHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCC
Confidence            2346667777777 56544   455555555444443

It is also involved in sporulation [].

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.30  E-value=2.3  Score=44.70  Aligned_cols=83  Identities=7%  Similarity=-0.011  Sum_probs=57.4

Q ss_pred             CCcHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          187 HGSSSTDAYYEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~------~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      .+|..+++.|...+..-|.|.      ....+++.+|. ...+.++|.++++.|-+.+|.++.-...+-.+... .+.-+
T Consensus       368 ~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL-~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~-E~~Se  445 (872)
T KOG4814|consen  368 EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYL-KLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA-EDKSE  445 (872)
T ss_pred             HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH-hcchH
Confidence            467778888888877766553      34556666664 67788888888888888888877765555555555 57777


Q ss_pred             HHHHHHHHHHH
Q 023753          261 RAESYFDQAVK  271 (277)
Q Consensus       261 eAi~~yekALe  271 (277)
                      +|+.+..+...
T Consensus       446 ~AL~~~~~~~s  456 (872)
T KOG4814|consen  446 EALTCLQKIKS  456 (872)
T ss_pred             HHHHHHHHHHh
Confidence            77777665543

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=89.14  E-value=2  Score=46.85  Aligned_cols=92  Identities=13%  Similarity=-0.056  Sum_probs=72.9

Q ss_pred             HHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023753          183 SNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRG------DFAKAEELCGRAILANPSDGNILSLYADLIW  253 (277)
Q Consensus       183 ~e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~G------d~eeA~e~~ekALeldP~n~~al~~LA~ll~  253 (277)
                      +.+...|++|+..|++.-.--|.-   .+|.+..|..+.++..      .+++|+..|++.-. .|.-|--|.-.|.+|.
T Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  563 (932)
T PRK13184        485 FLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQ  563 (932)
T ss_pred             HHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHH
Confidence            334578999999999999999875   4788888887754332      57788888877643 4666666777888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC
Q 023753          254 QAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       254 ~~~Gd~deAi~~yekALeldPdD  276 (277)
                      . +++|++-+++|.-|++..|+.
T Consensus       564 ~-~~~~~~~~~~~~~~~~~~~~~  585 (932)
T PRK13184        564 R-LGEYNEEIKSLLLALKRYSQH  585 (932)
T ss_pred             H-hhhHHHHHHHHHHHHHhcCCC
Confidence            8 999999999999999999875

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=88.89  E-value=1.8  Score=40.70  Aligned_cols=68  Identities=15%  Similarity=0.057  Sum_probs=59.3

Q ss_pred             HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753          183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (277)
Q Consensus       183 ~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l  251 (277)
                      +....+++.|..+-++.+.++|+++.-+..-|.+|. +.+.+.-|++-++..++.-|+++.+...-+.+
T Consensus       191 ~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~-ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         191 LLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYA-QLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHH-hcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            334578899999999999999999999999999887 89999999999999999999999876554443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=88.82  E-value=3.2  Score=36.24  Aligned_cols=56  Identities=20%  Similarity=0.051  Sum_probs=51.1

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       220 ~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ..++.+.++..+...-.+.|..+.+-..-|++++. .+++.+|+.+|+.+.+..|..
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~~   77 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPGF   77 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCCC
Confidence            56799999999999999999999999999999999 999999999999987776653

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=88.65  E-value=3.6  Score=39.12  Aligned_cols=98  Identities=15%  Similarity=0.112  Sum_probs=81.0

Q ss_pred             hhhHHHHHHh--CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023753          176 SGSNNNYSNN--NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFA-KAEELCGRAILANPSDGNILSLYADLI  252 (277)
Q Consensus       176 ~~yY~~m~e~--~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~e-eA~e~~ekALeldP~n~~al~~LA~ll  252 (277)
                      ...|+..+..  .-++.+-+.++.+.++-+|.|..+|...-.++ +..+++. .-++..++++..+..|.-||.+--+++
T Consensus        79 VW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~iv-e~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~  157 (318)
T KOG0530|consen   79 VWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIV-ELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVL  157 (318)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHH-HHhcCcccchHHHHHHHHhccccchhhhHHHHHHH
Confidence            3455543332  26788899999999999999999999877666 4788888 889999999999999999999988888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC
Q 023753          253 WQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       253 ~~~~Gd~deAi~~yekALeldPd  275 (277)
                      .. .++++.-+.+..+.|+.+-.
T Consensus       158 r~-F~~~~~EL~y~~~Lle~Di~  179 (318)
T KOG0530|consen  158 RF-FKDYEDELAYADELLEEDIR  179 (318)
T ss_pred             HH-HhhHHHHHHHHHHHHHHhhh
Confidence            88 78899999999988877643

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=88.40  E-value=4.6  Score=41.52  Aligned_cols=82  Identities=18%  Similarity=0.166  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHH----HHHHHHHHHHHcCCH
Q 023753          190 SSTDAYYEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANP--SDGNI----LSLYADLIWQAHKDA  259 (277)
Q Consensus       190 deAi~~yekALeldP~n----~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP--~n~~a----l~~LA~ll~~~~Gd~  259 (277)
                      ..|+.+++-+++..+-.    +.+++.||.+|.+...+++.|+.+++|++.+..  +..+.    .+.++.++.+ .+..
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~-~~~~  116 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK-TNPK  116 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-cCHH
Confidence            46788888777422222    457888888888788899999999999988774  33222    3345666666 4444


Q ss_pred             HHHHHHHHHHHHhC
Q 023753          260 SRAESYFDQAVKSA  273 (277)
Q Consensus       260 deAi~~yekALeld  273 (277)
                      . |+.+++++|+..
T Consensus       117 ~-a~~~l~~~I~~~  129 (608)
T PF10345_consen  117 A-ALKNLDKAIEDS  129 (608)
T ss_pred             H-HHHHHHHHHHHH
Confidence            4 888888888654

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=88.26  E-value=5.1  Score=41.42  Aligned_cols=89  Identities=13%  Similarity=0.223  Sum_probs=66.3

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEAN--PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeld--P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      +.+........|...|.+|=+.-  +.+..+...+-.++  ..+|.+-|...|+--++.-++.+.+-+.+..++.. .++
T Consensus       374 n~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~--cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~-lNd  450 (656)
T KOG1914|consen  374 NFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY--CSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSH-LND  450 (656)
T ss_pred             HHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH--hcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHH-hCc
Confidence            34444456778888888885533  22333333333333  57899999999999999999999988888888888 888


Q ss_pred             HHHHHHHHHHHHHh
Q 023753          259 ASRAESYFDQAVKS  272 (277)
Q Consensus       259 ~deAi~~yekALel  272 (277)
                      -..|..+|++++..
T Consensus       451 d~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  451 DNNARALFERVLTS  464 (656)
T ss_pred             chhHHHHHHHHHhc
Confidence            89999999999875

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.03  E-value=5.7  Score=36.05  Aligned_cols=77  Identities=21%  Similarity=0.114  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHH
Q 023753          191 STDAYYEKMIEANPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAES  264 (277)
Q Consensus       191 eAi~~yekALeldP~n~~---al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi~  264 (277)
                      +.+...++.+..+|.+..   +...+|..+. ..+++++|+..++.++..--+.   +.+-.++|.++++ ++.+++|+.
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~v-e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q-~~k~D~AL~  147 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEV-EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ-QKKADAALK  147 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-hhhHHHHHH
Confidence            555555666666655542   3345566666 5799999999999998753332   3345678999999 999999999


Q ss_pred             HHHHH
Q 023753          265 YFDQA  269 (277)
Q Consensus       265 ~yekA  269 (277)
                      .++..
T Consensus       148 ~L~t~  152 (207)
T COG2976         148 TLDTI  152 (207)
T ss_pred             HHhcc
Confidence            88754

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=87.99  E-value=2.3  Score=44.05  Aligned_cols=89  Identities=16%  Similarity=-0.074  Sum_probs=66.8

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGNALLLGNY--ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAES  264 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~~al~nL--A~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~  264 (277)
                      +.-.-|+..+..-+.++|.++..+...  ...+. ..++...|...+..++..||+++.++.+|+..+......+.-+..
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~  123 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLA-PLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALAD  123 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhcc-ccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHH
Confidence            334447777888888999999875443  44443 677888999999999999999999999999888773344455555


Q ss_pred             HHHHHHHhCCCC
Q 023753          265 YFDQAVKSAPDD  276 (277)
Q Consensus       265 ~yekALeldPdD  276 (277)
                      +.+.|....|++
T Consensus       124 ~~~~a~~~~~~~  135 (620)
T COG3914         124 ISEIAEWLSPDN  135 (620)
T ss_pred             HHHHHHhcCcch
Confidence            556688888875

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=87.85  E-value=3.1  Score=39.34  Aligned_cols=68  Identities=13%  Similarity=0.056  Sum_probs=55.8

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS  246 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~  246 (277)
                      .|-+-+...++|-++++++...|..+|.|..|++..|.+.. ..=+.++|.+-|.++++++|.-+.+..
T Consensus       235 Ny~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAha-a~Wn~~eA~~D~~~vL~ldpslasvVs  302 (329)
T KOG0545|consen  235 NYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHA-AVWNEAEAKADLQKVLELDPSLASVVS  302 (329)
T ss_pred             hHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-hhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence            34444444567779999999999999999999999999876 556789999999999999998766544

>smart00101 14_3_3 14-3-3 homologues

Probab=87.33  E-value=3.2  Score=38.40  Aligned_cols=60  Identities=17%  Similarity=0.187  Sum_probs=43.2

Q ss_pred             hHHHHHHhC-CC-----cHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          178 SNNNYSNNN-HG-----SSSTDAYYEKMIE-----ANPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAILA  237 (277)
Q Consensus       178 yY~~m~e~~-Gd-----~deAi~~yekALe-----ldP~n~~---al~nLA~lL~e~~Gd~eeA~e~~ekALel  237 (277)
                      |||-+.+.. ++     .++|...|++|++     +.|.+|.   ...|++.+|++..++.++|.+..++|+..
T Consensus       127 YyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~  200 (244)
T smart00101      127 YHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE  200 (244)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            556555543 32     4578999999986     4578874   35678888998899999998777766653

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.29  E-value=5.2  Score=40.95  Aligned_cols=96  Identities=17%  Similarity=0.176  Sum_probs=71.3

Q ss_pred             CcchhhHHHHHHhC-CCcHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Q 023753          173 SGFSGSNNNYSNNN-HGSSSTDAYYEKMIEANPG-N--ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-------  241 (277)
Q Consensus       173 ~~~~~yY~~m~e~~-Gd~deAi~~yekALeldP~-n--~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n-------  241 (277)
                      ++...+..++|-.. +.++.|+..|..|+++-.. +  +.+..|+|..|. ..+   +++.+|+..=.+.|.|       
T Consensus       366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL-~~~---~~ed~y~~ld~i~p~nt~s~ssq  441 (629)
T KOG2300|consen  366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL-RIG---DAEDLYKALDLIGPLNTNSLSSQ  441 (629)
T ss_pred             HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH-Hhc---cHHHHHHHHHhcCCCCCCcchHH
Confidence            44455666666654 8999999999999987544 3  345567888776 544   4566776666677764       


Q ss_pred             ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753          242 ---GNILSLYADLIWQAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       242 ---~~al~~LA~ll~~~~Gd~deAi~~yekALeld  273 (277)
                         +.+++.+|.+.+. ++++.||...+.+.++..
T Consensus       442 ~l~a~~~~v~glfaf~-qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  442 RLEASILYVYGLFAFK-QNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhc
Confidence               4567788888888 999999999999998875

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=87.10  E-value=2.5  Score=38.65  Aligned_cols=60  Identities=27%  Similarity=0.318  Sum_probs=41.6

Q ss_pred             hHHHHHHhCCC------cHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          178 SNNNYSNNNHG------SSSTDAYYEKMIEA-----NPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAILA  237 (277)
Q Consensus       178 yY~~m~e~~Gd------~deAi~~yekALel-----dP~n~~---al~nLA~lL~e~~Gd~eeA~e~~ekALel  237 (277)
                      ||+-+.+-...      .++|..+|++|+++     .|.+|.   ...|++.+|++..++.++|++..++|+..
T Consensus       125 yyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~  198 (236)
T PF00244_consen  125 YYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE  198 (236)
T ss_dssp             HHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            55555554422      25788888888764     677874   45678888888889999988888887653

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=86.93  E-value=0.81  Score=27.37  Aligned_cols=25  Identities=36%  Similarity=0.255  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023753          208 LLLGNYARFLKEVRGDFAKAEELCGR  233 (277)
Q Consensus       208 ~al~nLA~lL~e~~Gd~eeA~e~~ek  233 (277)
                      .+++++|.++. ..|++++|+..+++
T Consensus         2 ~a~~~la~~~~-~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALL-AQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHhC
Confidence            56788999997 89999999998864

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=86.78  E-value=4.2  Score=35.39  Aligned_cols=63  Identities=21%  Similarity=0.110  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       208 ~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                      .++..+|.+|. ..||+++|+++|.++.+.....   .+.+.++-.+.+. .+++..+..++.+|-.+
T Consensus        37 ~~~~~l~~~~~-~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   37 MALEDLADHYC-KIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHH-HhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Confidence            67889999887 8999999999999988865443   3345566667777 89999999999988654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=86.47  E-value=3.1  Score=36.04  Aligned_cols=50  Identities=22%  Similarity=0.270  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          224 FAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       224 ~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                      .+..++..++.++..| ++.++.+++.++.. +|+.++|..+.+++..+.|.
T Consensus       127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~-~G~~~eA~~~~~~~~~lyP~  176 (193)
T PF11846_consen  127 LEAYIEWAERLLRRRP-DPNVYQRYALALAL-LGDPEEARQWLARARRLYPA  176 (193)
T ss_pred             HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCc
Confidence            3445555566666666 56677777777777 78888888888888877774

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=86.40  E-value=7  Score=38.58  Aligned_cols=91  Identities=16%  Similarity=0.035  Sum_probs=64.7

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-------------------  239 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP-------------------  239 (277)
                      .+.++.. .+..+-++....|+++||.-+.++..+|.   +..--..+|+..|++|++..-                   
T Consensus       191 MQ~AWRE-Rnp~~RI~~A~~ALeIN~eCA~AyvLLAE---EEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~  266 (556)
T KOG3807|consen  191 MQKAWRE-RNPPARIKAAYQALEINNECATAYVLLAE---EEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQ  266 (556)
T ss_pred             HHHHHHh-cCcHHHHHHHHHHHhcCchhhhHHHhhhh---hhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhh
Confidence            3333333 34566678888999999999999988875   334457788888888876411                   


Q ss_pred             ----CC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753          240 ----SD--GNILSLYADLIWQAHKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       240 ----~n--~~al~~LA~ll~~~~Gd~deAi~~yekALeldP  274 (277)
                          .|  ..+-..+|.|..+ +|+..+|++.|+...+-.|
T Consensus       267 ~rRDtnvl~YIKRRLAMCARk-lGrlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  267 LRRDTNVLVYIKRRLAMCARK-LGRLREAVKIMRDLMKEFP  306 (556)
T ss_pred             hhcccchhhHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhcc
Confidence                11  1223467888888 9999999999998776554

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.06  E-value=1.3  Score=29.54  Aligned_cols=29  Identities=10%  Similarity=0.335  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          243 NILSLYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       243 ~al~~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                      +++..||.+-+. .++|++|+.-|+++|++
T Consensus         2 dv~~~Lgeisle-~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLE-NENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence            467778888887 88888888888888876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=86.06  E-value=4.7  Score=38.12  Aligned_cols=53  Identities=13%  Similarity=0.020  Sum_probs=46.7

Q ss_pred             HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA  237 (277)
Q Consensus       184 e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel  237 (277)
                      ...++++.++..+++.++.+|-+-.+|..+-.+|+ +.|+...|+..|++.-..
T Consensus       164 ~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~-~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         164 IACGRADAVIEHLERLIELDPYDEPAYLRLMEAYL-VNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HcCCchHHHHHHHHHHHH
Confidence            34578899999999999999999999888887886 899999999999998774

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=85.61  E-value=6.7  Score=40.61  Aligned_cols=87  Identities=14%  Similarity=0.176  Sum_probs=70.0

Q ss_pred             cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023753          189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQ  268 (277)
Q Consensus       189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yek  268 (277)
                      .+.+...|...|...|.--.+|-.+|..-+ +.+..+++.+.|+++|..-|.....|..|-.++....++.+.-...|++
T Consensus        61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~-klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~  139 (577)
T KOG1258|consen   61 VDALREVYDIFLSKYPLCYGYWKKFADYEY-KLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER  139 (577)
T ss_pred             HHHHHHHHHHHHhhCccHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence            367778888888888888888888888666 7888999999999999988888888887776666657888888888888


Q ss_pred             HHHhCCCC
Q 023753          269 AVKSAPDD  276 (277)
Q Consensus       269 ALeldPdD  276 (277)
                      |+...-.+
T Consensus       140 A~~~vG~d  147 (577)
T KOG1258|consen  140 AKSYVGLD  147 (577)
T ss_pred             HHHhcccc
Confidence            88765443

>PLN03138 Protein TOC75; Provisional

Probab=85.49  E-value=0.63  Score=49.70  Aligned_cols=15  Identities=27%  Similarity=0.587  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHhCCCC
Q 023753          192 TDAYYEKMIEANPGN  206 (277)
Q Consensus       192 Ai~~yekALeldP~n  206 (277)
                      .++.+.++|.+.|..
T Consensus       166 ~e~~l~~~i~~kpG~  180 (796)
T PLN03138        166 TEDSFFEMVTLRPGG  180 (796)
T ss_pred             hHHHHHHHHhcCCCC
Confidence            344444455555443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=85.37  E-value=4.4  Score=36.50  Aligned_cols=65  Identities=22%  Similarity=0.227  Sum_probs=47.2

Q ss_pred             cHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 023753          189 SSSTDAYYEKMIEANPG--N----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-GNILSLYADLIWQ  254 (277)
Q Consensus       189 ~deAi~~yekALeldP~--n----~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n-~~al~~LA~ll~~  254 (277)
                      +.+|...|++|++....  .    ..+++.+|.+.+ ..|++++|..+|.+++...-.. +..+..+|.=+|+
T Consensus       141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~r-rlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~  212 (214)
T PF09986_consen  141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNR-RLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ  212 (214)
T ss_pred             HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence            34788888888876543  2    467888898776 8999999999999999864332 2456666665554

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=85.27  E-value=8.5  Score=38.63  Aligned_cols=88  Identities=16%  Similarity=0.132  Sum_probs=52.3

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH----------------------------------
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELC----------------------------------  231 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~----------------------------------  231 (277)
                      .|+.+.|+.|-++|-.+.|.-++++...-.... ..||++.|+++.                                  
T Consensus       167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~-~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp  245 (531)
T COG3898         167 LGAREAARHYAERAAEKAPQLPWAARATLEARC-AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP  245 (531)
T ss_pred             cccHHHHHHHHHHHHhhccCCchHHHHHHHHHH-hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence            377777777778887777777766554333333 355555555544                                  


Q ss_pred             -------HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          232 -------GRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       232 -------ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                             .+++++.|+...+-..-+..|+. .++..++-.+++.+.+..|.
T Consensus       246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~-d~~~rKg~~ilE~aWK~ePH  295 (531)
T COG3898         246 ASARDDALEANKLAPDLVPAAVVAARALFR-DGNLRKGSKILETAWKAEPH  295 (531)
T ss_pred             HHHHHHHHHHhhcCCccchHHHHHHHHHHh-ccchhhhhhHHHHHHhcCCC
Confidence                   44445555555554555555555 66666666666666665553

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=85.25  E-value=4.9  Score=31.29  Aligned_cols=52  Identities=6%  Similarity=-0.011  Sum_probs=34.2

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          220 VRGDFAKAEELCGRAILANPSDGNILSL---YADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       220 ~~Gd~eeA~e~~ekALeldP~n~~al~~---LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                      ..++.++|+..+++|++..++.+.-+..   +..++.+ .|+|.+++++--+=+.+
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e-~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHME-WGKYREMLAFALQQLEI   72 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            4667778888888888877766554443   4455666 67777777665555443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=84.86  E-value=0.59  Score=45.60  Aligned_cols=90  Identities=16%  Similarity=0.008  Sum_probs=71.3

Q ss_pred             hCCCcHHHHHHHHHHHHhCC---C----------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 023753          185 NNHGSSSTDAYYEKMIEANP---G----------------NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNIL  245 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP---~----------------n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al  245 (277)
                      ..+++..|..-|.+++..--   .                -.....+++.+.. ..+++..|+.....+++.++....++
T Consensus       234 kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~l-k~~~~~~a~~~~~~~~~~~~s~tka~  312 (372)
T KOG0546|consen  234 KKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGL-KVKGRGGARFRTNEALRDERSKTKAH  312 (372)
T ss_pred             hhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcc-cccCCCcceeccccccccChhhCcHH
Confidence            35677788888887765311   1                0123455666554 77889999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          246 SLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       246 ~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +..+..+.. ..++++|++.++.|.+.+|+|
T Consensus       313 ~Rr~~~~~~-~~~~~~a~~~~~~a~~~~p~d  342 (372)
T KOG0546|consen  313 YRRGQAYKL-LKNYDEALEDLKKAKQKAPND  342 (372)
T ss_pred             HHHHhHHHh-hhchhhhHHHHHHhhccCcch
Confidence            999999988 999999999999999999986

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=83.59  E-value=8.5  Score=35.11  Aligned_cols=48  Identities=21%  Similarity=0.166  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          225 AKAEELCGRAILA-----NPSDGNI---LSLYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       225 eeA~e~~ekALel-----dP~n~~a---l~~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                      ++|.++|++|+.+     .|.+|..   ..+++.+|+...++.++|++..++|+..
T Consensus       143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~  198 (236)
T PF00244_consen  143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE  198 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            6788888888864     6777764   4567888888789999998888887753

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=83.31  E-value=9.8  Score=36.45  Aligned_cols=73  Identities=15%  Similarity=0.085  Sum_probs=55.3

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023753          195 YYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYADLIWQAHKDASRAESYFDQA  269 (277)
Q Consensus       195 ~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~--n~~al~~LA~ll~~~~Gd~deAi~~yekA  269 (277)
                      .+++.+..||+|..+.+.+|..+. ..|++++|.+++-..++.|-.  |..+...+-.++.. .|..+.+...|++=
T Consensus       224 ~l~~~~aadPdd~~aa~~lA~~~~-~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~-~g~~Dp~~~~~RRk  298 (304)
T COG3118         224 DLQRRLAADPDDVEAALALADQLH-LVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA-FGPADPLVLAYRRK  298 (304)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh-cCCCCHHHHHHHHH
Confidence            455666779999999999999997 899999999999999998763  56666666666655 66444455555543

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=83.15  E-value=4.8  Score=38.85  Aligned_cols=58  Identities=19%  Similarity=0.110  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023753          211 GNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAV  270 (277)
Q Consensus       211 ~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekAL  270 (277)
                      +..+..|. ..+.+.+|+++.++++.++|-+...+..+-.+|.. .||--.|+..|++.-
T Consensus       283 gkva~~yl-e~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~-~gD~is~~khyerya  340 (361)
T COG3947         283 GKVARAYL-EAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLAT-LGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHH-HcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-hccchhhhhHHHHHH
Confidence            33444454 68999999999999999999999998888888888 899888888887754

>PLN03138 Protein TOC75; Provisional

Probab=82.77  E-value=1  Score=48.20  Aligned_cols=18  Identities=11%  Similarity=0.062  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHhCCCCH
Q 023753          225 AKAEELCGRAILANPSDG  242 (277)
Q Consensus       225 eeA~e~~ekALeldP~n~  242 (277)
                      ...++.+.++|.+.|...
T Consensus       164 ~~~e~~l~~~i~~kpG~v  181 (796)
T PLN03138        164 VGTEDSFFEMVTLRPGGV  181 (796)
T ss_pred             cchHHHHHHHHhcCCCCc
Confidence            346677788888887643

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=81.78  E-value=18  Score=36.07  Aligned_cols=87  Identities=13%  Similarity=0.143  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-
Q 023753          190 SSTDAYYEKMIEANPGNALLLGNYARFLKE-----------VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK-  257 (277)
Q Consensus       190 deAi~~yekALeldP~n~~al~nLA~lL~e-----------~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G-  257 (277)
                      .++++.=.+.+..+|+...+|+---.++.+           ++.-.++-+.+.+.+++.+|+...+|+...+++.. .. 
T Consensus        46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~-~p~  124 (421)
T KOG0529|consen   46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQK-NPH  124 (421)
T ss_pred             hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-CCC
Confidence            467888888899999988887644333321           11245667889999999999999999999999986 44 


Q ss_pred             -CHHHHHHHHHHHHHhCCCCC
Q 023753          258 -DASRAESYFDQAVKSAPDDW  277 (277)
Q Consensus       258 -d~deAi~~yekALeldPdD~  277 (277)
                       ++..=+++.+++++.+|.||
T Consensus       125 ~~~~~EL~lcek~L~~D~RNf  145 (421)
T KOG0529|consen  125 SDWNTELQLCEKALKQDPRNF  145 (421)
T ss_pred             chHHHHHHHHHHHHhcCcccc
Confidence             36788999999999999885

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=80.69  E-value=8.3  Score=33.36  Aligned_cols=51  Identities=24%  Similarity=0.324  Sum_probs=43.7

Q ss_pred             cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD  241 (277)
Q Consensus       189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n  241 (277)
                      .+..++..++.++..| ++.++.+++.++. ..|+.++|.+..+++..+-|.+
T Consensus       127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~-~~G~~~eA~~~~~~~~~lyP~~  177 (193)
T PF11846_consen  127 LEAYIEWAERLLRRRP-DPNVYQRYALALA-LLGDPEEARQWLARARRLYPAD  177 (193)
T ss_pred             HHHHHHHHHHHHHhCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcH
Confidence            4466777888888888 6888899999887 8999999999999999999943

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=80.10  E-value=18  Score=39.33  Aligned_cols=93  Identities=17%  Similarity=0.162  Sum_probs=67.4

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPG--N-------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN-----  243 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~--n-------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~-----  243 (277)
                      .|......+.++++|..+..++...-+.  .       +.+....|.+.. ..+++++|+++.+.|+..-|.+..     
T Consensus       420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val-~~~~~e~a~~lar~al~~L~~~~~~~r~~  498 (894)
T COG2909         420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVAL-NRGDPEEAEDLARLALVQLPEAAYRSRIV  498 (894)
T ss_pred             HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence            3444455568899999888888765444  1       122223334443 679999999999999999887543     


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          244 ILSLYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       244 al~~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                      ++..++.+..- .|++++|..+..++.++
T Consensus       499 ~~sv~~~a~~~-~G~~~~Al~~~~~a~~~  526 (894)
T COG2909         499 ALSVLGEAAHI-RGELTQALALMQQAEQM  526 (894)
T ss_pred             hhhhhhHHHHH-hchHHHHHHHHHHHHHH
Confidence            46667777777 89999999999998876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	277
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.74
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.69
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.68
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.65
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.65
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.64
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.64
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.64
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.63
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.59
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.59
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.58
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.58
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.58
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.57
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.57
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.57
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.57
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.56
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.56
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.54
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.54
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.54
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.53
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.53
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.53
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.53
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.51
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.5
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.49
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.49
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.49
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.49
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.49
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.48
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.48
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.48
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.47
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.45
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.45
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.45
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.45
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.44
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.44
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.43
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.42
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.41
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.41
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.41
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.41
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.4
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.38
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.37
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.37
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.37
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.36
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.36
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.36
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.36
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.35
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.35
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.35
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.35
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.34
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.33
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.33
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.33
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.33
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.32
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.31
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.31
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.31
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.3
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.3
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.3
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.3
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.29
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.29
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.29
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.29
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.29
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.28
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.28
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.28
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.27
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.27
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.27
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.26
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.26
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.26
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.25
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.24
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.24
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.22
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.22
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.21
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.21
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.21
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.2
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.2
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.18
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.18
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.18
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.17
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.17
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.17
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.16
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.16
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.16
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.16
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.14
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.13
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.13
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.13
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.12
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.11
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.1
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.1
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.09
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.09
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.08
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.08
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.07
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.06
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.04
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.03
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.02
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.0
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.99
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.99
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.98
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.98
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.97
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.97
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.97
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.96
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.94
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.94
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.94
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.94
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.93
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.93
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.93
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.92
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.91
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.91
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.9
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.89
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.89
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.89
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.89
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.88
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.88
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.88
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.86
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.85
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.85
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.85
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.84
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.84
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.83
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.83
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.82
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.82
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.81
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.8
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.8
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.79
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.79
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.78
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.78
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.78
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.78
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.77
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.76
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.73
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.73
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.73
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.71
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.71
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.7
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.7
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.66
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.64
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.6
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.58
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.58
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.57
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.54
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.52
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.5
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.49
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.47
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.43
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.34
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.32
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.29
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.28
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.23
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.08
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.94
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.94
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.89
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.87
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.82
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.77
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.75
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.66
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.64
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.63
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.62
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.55
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.41
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.37
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.34
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.29
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.22
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.02
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.89
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.87
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.78
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.66
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.65
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.62
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.46
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.1
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.9
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.84
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.59
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.27
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.15
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.7
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	94.37
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.13
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.99
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	93.37
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	91.86
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	91.09
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.0
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	90.8
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	90.3
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	90.17
2o8p_A	227	14-3-3 domain containing protein; signaling protei	88.19
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	87.23
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	86.64
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	86.18
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	85.09
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	83.89
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	83.2
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	81.73

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.74  E-value=3.7e-17  Score=129.98  Aligned_cols=95  Identities=19%  Similarity=0.228  Sum_probs=91.2

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      +..+...|++++|+.+|++||+++|.++.+|+++|.++. ..|++++|+.+|++||+++|+++.+++++|.++.. +|++
T Consensus        20 G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~   97 (126)
T 4gco_A           20 GNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT-KLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA-MREW   97 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH-hhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CCCH
Confidence            356777899999999999999999999999999999997 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+.+|++|++++|++
T Consensus        98 ~~A~~~~~~al~l~P~~  114 (126)
T 4gco_A           98 SKAQRAYEDALQVDPSN  114 (126)
T ss_dssp             HHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHCcCC
Confidence            99999999999999987

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.69  E-value=2.4e-16  Score=130.85  Aligned_cols=94  Identities=13%  Similarity=0.141  Sum_probs=89.9

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ..+...|++++|+.+|+++++++|+++.+|+++|.++. ..|++++|+.+|++|++++|+++.+++++|.+|.. +|+++
T Consensus        44 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~-lg~~~  121 (151)
T 3gyz_A           44 YDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR-LKAPL  121 (151)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHH
Confidence            56667899999999999999999999999999999997 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.+|++|++++|+.
T Consensus       122 eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          122 KAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHhCCCH
Confidence            9999999999999974

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.68  E-value=3.5e-16  Score=127.10  Aligned_cols=97  Identities=14%  Similarity=0.174  Sum_probs=90.2

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G  257 (277)
                      .+..+|...+++++|+.+|+++|+++|+++.+|+++|.++. ..+++++|+.+|++|++++|+++.+++++|.++.. .+
T Consensus        36 ~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~  113 (150)
T 4ga2_A           36 YFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYE-LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCK-ND  113 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC
Confidence            35678888999999999999999999999999999999997 89999999999999999999999999999999999 99


Q ss_pred             CHHHHHHH-HHHHHHhCCCC
Q 023753          258 DASRAESY-FDQAVKSAPDD  276 (277)
Q Consensus       258 d~deAi~~-yekALeldPdD  276 (277)
                      ++++|+.. +++|++++|++
T Consensus       114 ~~~~aa~~~~~~al~l~P~~  133 (150)
T 4ga2_A          114 VTDGRAKYWVERAAKLFPGS  133 (150)
T ss_dssp             SSSSHHHHHHHHHHHHSTTC
T ss_pred             ChHHHHHHHHHHHHHhCcCC
Confidence            99876654 69999999987

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.65  E-value=1.9e-15  Score=122.42  Aligned_cols=95  Identities=18%  Similarity=0.227  Sum_probs=90.8

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ...+...+++++|+.+|+++++++|+++.+++++|.++. ..+++++|+.+|++|++++|+++.+++++|.++.. .+++
T Consensus        18 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~   95 (164)
T 3sz7_A           18 GNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS-ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD-MADY   95 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCH
Confidence            356667899999999999999999999999999999997 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+.+|+++++++|++
T Consensus        96 ~~A~~~~~~al~~~p~~  112 (164)
T 3sz7_A           96 KGAKEAYEKGIEAEGNG  112 (164)
T ss_dssp             HHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHhCCCc
Confidence            99999999999999987

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.65  E-value=1.7e-15  Score=123.17  Aligned_cols=95  Identities=8%  Similarity=0.016  Sum_probs=90.3

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ...+...|++++|+.+|+++++++|+++.+|+++|.++. ..|++++|+.+|++|+.++|+++.+++++|.++.. .|++
T Consensus        28 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~  105 (148)
T 2vgx_A           28 AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ-XGEL  105 (148)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cCCH
Confidence            356667899999999999999999999999999999997 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+.+|+++++++|++
T Consensus       106 ~~A~~~~~~al~~~p~~  122 (148)
T 2vgx_A          106 AEAESGLFLAQELIANX  122 (148)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHCcCC
Confidence            99999999999999875

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.64  E-value=2.3e-15  Score=116.31  Aligned_cols=91  Identities=21%  Similarity=0.116  Sum_probs=87.5

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ..+...+++++|+.+|+++++++|+++.+++++|.++. ..+++++|+.+|++|++++|+++.+++.+|.++.. .|+++
T Consensus        12 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~   89 (126)
T 3upv_A           12 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VKEYA   89 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HhCHH
Confidence            55667899999999999999999999999999999997 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhC
Q 023753          261 RAESYFDQAVKSA  273 (277)
Q Consensus       261 eAi~~yekALeld  273 (277)
                      +|+.+|+++++++
T Consensus        90 ~A~~~~~~al~~~  102 (126)
T 3upv_A           90 SALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999999

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.64  E-value=1.9e-15  Score=120.49  Aligned_cols=94  Identities=14%  Similarity=0.018  Sum_probs=89.7

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ..+...+++++|+.+|+++++++|+++.+|+++|.++. ..+++++|+.+|++|+.++|+++.+++++|.++.. .|+++
T Consensus        26 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~  103 (142)
T 2xcb_A           26 FNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ-LGDLD  103 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHH
Confidence            55667899999999999999999999999999999997 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.+|+++++++|++
T Consensus       104 ~A~~~~~~al~~~p~~  119 (142)
T 2xcb_A          104 GAESGFYSARALAAAQ  119 (142)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            9999999999999875

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.64  E-value=1.4e-15  Score=119.79  Aligned_cols=94  Identities=12%  Similarity=-0.019  Sum_probs=85.5

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ..+...|++++|+..|+++++++|+++.+|+++|.++. ..|++++|+.+|++|++++|+++.+++.+|.++.. .|+++
T Consensus        25 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~-~g~~~  102 (121)
T 1hxi_A           25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNAN  102 (121)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence            45667899999999999999999999999999999997 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.+|+++++++|++
T Consensus       103 ~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A          103 AALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHhCcCC
Confidence            9999999999999975

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.63  E-value=3e-15  Score=118.54  Aligned_cols=95  Identities=20%  Similarity=0.292  Sum_probs=87.4

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG-------NILSLYADL  251 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~-------~al~~LA~l  251 (277)
                      .+..+...+++++|+.+|++||+++|+++.+|+++|.++. ..+++++|+++|++||+++|++.       .++.++|.+
T Consensus        14 lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~   92 (127)
T 4gcn_A           14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF-EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNA   92 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH-HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence            3466777899999999999999999999999999999997 89999999999999999998763       578889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          252 IWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       252 l~~~~Gd~deAi~~yekALeldPd  275 (277)
                      +.. ++++++|+.+|+++|+..|+
T Consensus        93 ~~~-~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           93 FQK-QNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHSCC
T ss_pred             HHH-cCCHHHHHHHHHHHHhhCcC
Confidence            998 99999999999999999886

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.59  E-value=6.8e-15  Score=118.88  Aligned_cols=95  Identities=16%  Similarity=0.121  Sum_probs=89.3

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEA------------------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD  241 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALel------------------dP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n  241 (277)
                      +..+...+++++|+.+|++||++                  +|.+..+++++|.++. ..+++++|+.+|++||+++|++
T Consensus        18 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~A~~~~~~al~~~p~~   96 (162)
T 3rkv_A           18 GNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL-NIGDLHEAEETSSEVLKREETN   96 (162)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhcCCcc
Confidence            35566789999999999999999                  7788899999999997 8999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       242 ~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +.+++.+|.++.. +|++++|+.+|++|++++|++
T Consensus        97 ~~a~~~~g~~~~~-~g~~~~A~~~~~~al~l~p~~  130 (162)
T 3rkv_A           97 EKALFRRAKARIA-AWKLDEAEEDLKLLLRNHPAA  130 (162)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHHHHHHH-HhcHHHHHHHHHHHHhcCCCC
Confidence            9999999999999 999999999999999999986

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.59  E-value=7.1e-16  Score=125.29  Aligned_cols=94  Identities=10%  Similarity=0.065  Sum_probs=88.4

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      .++...+++++|+..|++++..+|+++.+++++|.+|. ..+++++|+++|++|++++|+++.+++.+|.++.. .++++
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~   82 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYY-EAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-EENTD   82 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCchH
Confidence            44556789999999999999999999999999999997 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.+|++|++++|++
T Consensus        83 ~A~~~~~~al~~~p~~   98 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQ   98 (150)
T ss_dssp             HHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            9999999999999987

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.58  E-value=1.8e-14  Score=111.33  Aligned_cols=94  Identities=17%  Similarity=0.082  Sum_probs=89.5

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ...+...+++++|+.+|+++++++|+++.+++++|.++. ..+++++|+.+|++|++++|+++.+++.+|.++.. .+++
T Consensus        16 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~   93 (137)
T 3q49_B           16 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESY   93 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-HhhH
Confidence            356667899999999999999999999999999999997 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCC
Q 023753          260 SRAESYFDQAVKSAPD  275 (277)
Q Consensus       260 deAi~~yekALeldPd  275 (277)
                      ++|+.+|+++++++|+
T Consensus        94 ~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           94 DEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHChh
Confidence            9999999999999886

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.58  E-value=5.5e-14  Score=103.86  Aligned_cols=95  Identities=19%  Similarity=0.209  Sum_probs=89.9

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ...+...+++++|+.+|+++++.+|+++.++.++|.++. ..+++++|+.+|+++++++|+++.++..+|.++.. .+++
T Consensus        11 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~   88 (118)
T 1elw_A           11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LNRF   88 (118)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhH
Confidence            355667899999999999999999999999999999987 79999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+.+|+++++++|++
T Consensus        89 ~~A~~~~~~~~~~~~~~  105 (118)
T 1elw_A           89 EEAKRTYEEGLKHEANN  105 (118)
T ss_dssp             HHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            99999999999999986

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.58  E-value=5.5e-14  Score=106.58  Aligned_cols=94  Identities=20%  Similarity=0.156  Sum_probs=89.4

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ..+...+++++|+.+|+++++.+|+++.+++++|.++. ..+++++|+.+|+++++++|+++.+++.+|.++.. .++++
T Consensus        24 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~  101 (133)
T 2lni_A           24 NECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA-MKDYT  101 (133)
T ss_dssp             HHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-HhhHH
Confidence            55667899999999999999999999999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.+|+++++++|++
T Consensus       102 ~A~~~~~~~~~~~p~~  117 (133)
T 2lni_A          102 KAMDVYQKALDLDSSC  117 (133)
T ss_dssp             HHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHhCCCc
Confidence            9999999999999975

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.57  E-value=3e-15  Score=115.51  Aligned_cols=89  Identities=17%  Similarity=0.242  Sum_probs=82.3

Q ss_pred             CCCcHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 023753          186 NHGSSSTDAYYEKMIEA---NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA  262 (277)
Q Consensus       186 ~Gd~deAi~~yekALel---dP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deA  262 (277)
                      .|++++|+.+|++|+++   +|+++.+++++|.++. ..+++++|+.+|++|++++|+++.+++++|.++.. .|++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFR-TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN-LGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-cCCHHHH
Confidence            47899999999999999   6999999999999997 89999999999999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHhCCCC
Q 023753          263 ESYFDQAVKSAPDD  276 (277)
Q Consensus       263 i~~yekALeldPdD  276 (277)
                      +.+|+++++..|++
T Consensus        81 ~~~~~~al~~~p~~   94 (117)
T 3k9i_A           81 VELLLKIIAETSDD   94 (117)
T ss_dssp             HHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHhCCCc
Confidence            99999999999986

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.57  E-value=2.6e-14  Score=116.35  Aligned_cols=96  Identities=14%  Similarity=0.012  Sum_probs=90.1

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      ....+...++++.|+..++++++++|+++.++..+|.++. ..|++++|+++|+++++++|+++.++.++|.++.. +|+
T Consensus        79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~g~  156 (184)
T 3vtx_A           79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD-SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG-KGL  156 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH-CCC
Confidence            3456667799999999999999999999999999999997 89999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 023753          259 ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       259 ~deAi~~yekALeldPdD  276 (277)
                      +++|+.+|++||+++|++
T Consensus       157 ~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          157 RDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             HHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHhCCccC
Confidence            999999999999999964

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.57  E-value=9.4e-15  Score=124.57  Aligned_cols=94  Identities=14%  Similarity=0.066  Sum_probs=87.9

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPG-------NAL-----LLGNYARFLKEVRGDFAKAEELCGRAILA-------NPSD  241 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~-------n~~-----al~nLA~lL~e~~Gd~eeA~e~~ekALel-------dP~n  241 (277)
                      ..+...|++++|+.+|++||+++|+       +..     +|.|+|.++. ..|+|++|+.+|++||++       +|++
T Consensus        19 ~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~-~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~   97 (159)
T 2hr2_A           19 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQDE   97 (159)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhccccCCCch
Confidence            4556679999999999999999999       444     9999999997 899999999999999999       9999


Q ss_pred             HHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          242 GNIL----SLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       242 ~~al----~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +.+|    ++.|.++.. +|++++|+..|++|++++|+|
T Consensus        98 ~~A~~~~~~~rG~aL~~-lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           98 GKLWISAVYSRALALDG-LGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhHHHHHHH-CCCHHHHHHHHHHHHhcCCCc
Confidence            9999    999999999 999999999999999999987

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.57  E-value=1.9e-14  Score=122.06  Aligned_cols=94  Identities=13%  Similarity=0.149  Sum_probs=88.9

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGN----------------YARFLKEVRGDFAKAEELCGRAILANPSDGNI  244 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~n----------------LA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a  244 (277)
                      ..+...|++++|+.+|+++++++|+++.+++.                +|.++. ..|++++|+.+|++|++++|+++.+
T Consensus        12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~   90 (208)
T 3urz_A           12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK-KNRNYDKAYLFYKELLQKAPNNVDC   90 (208)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHH
Confidence            34456799999999999999999999999999                999997 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       245 l~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ++.+|.++.. .|++++|+.+|+++++++|++
T Consensus        91 ~~~lg~~~~~-~g~~~~A~~~~~~al~~~P~~  121 (208)
T 3urz_A           91 LEACAEMQVC-RGQEKDALRMYEKILQLEADN  121 (208)
T ss_dssp             HHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCC
Confidence            9999999999 999999999999999999986

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.56  E-value=5.2e-14  Score=103.34  Aligned_cols=96  Identities=13%  Similarity=0.056  Sum_probs=90.7

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHc
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYADLIWQAH  256 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~--n~~al~~LA~ll~~~~  256 (277)
                      ....+...+++++|+.+|+++++++|.++.+++++|.++. ..+++++|+.+|+++++++|+  ++.++..+|.++.. .
T Consensus        12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~-~   89 (112)
T 2kck_A           12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY-NLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY-I   89 (112)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT-C
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH-H
Confidence            4456667899999999999999999999999999999987 899999999999999999999  99999999999999 9


Q ss_pred             -CCHHHHHHHHHHHHHhCCCC
Q 023753          257 -KDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       257 -Gd~deAi~~yekALeldPdD  276 (277)
                       +++++|+++|++++...|.+
T Consensus        90 ~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           90 EGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             SSCSHHHHHHHHHHGGGCCCC
T ss_pred             hCCHHHHHHHHHHHhhcccCC
Confidence             99999999999999999986

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.56  E-value=1.3e-13  Score=103.33  Aligned_cols=95  Identities=25%  Similarity=0.350  Sum_probs=89.8

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ...+...+++++|+.+|+++++.+|+++.++.++|.++. ..+++++|+.+|++++.++|+++.++..+|.++.. .+++
T Consensus        19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   96 (131)
T 2vyi_A           19 GNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYS-KLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS-LNKH   96 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH-hCCH
Confidence            355666899999999999999999999999999999987 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+.+|+++++++|++
T Consensus        97 ~~A~~~~~~~~~~~p~~  113 (131)
T 2vyi_A           97 VEAVAYYKKALELDPDN  113 (131)
T ss_dssp             HHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHhcCccc
Confidence            99999999999999976

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=9.2e-14  Score=107.51  Aligned_cols=94  Identities=19%  Similarity=0.117  Sum_probs=89.0

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G  257 (277)
                      ..+...+++++|+.+|+++++++|++   ..+++++|.++. ..+++++|+.+|+++++++|+++.+++.+|.++.. .+
T Consensus        36 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~  113 (148)
T 2dba_A           36 NELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL-KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK-LG  113 (148)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH-HT
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH-cC
Confidence            55566799999999999999999998   899999999987 89999999999999999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 023753          258 DASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       258 d~deAi~~yekALeldPdD  276 (277)
                      ++++|+.+|+++++++|++
T Consensus       114 ~~~~A~~~~~~al~~~p~~  132 (148)
T 2dba_A          114 RLDQAVLDLQRCVSLEPKN  132 (148)
T ss_dssp             CHHHHHHHHHHHHHHCSSC
T ss_pred             CHHHHHHHHHHHHHcCCCc
Confidence            9999999999999999986

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.54  E-value=4.5e-14  Score=120.51  Aligned_cols=96  Identities=15%  Similarity=-0.002  Sum_probs=91.1

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH--  256 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~--  256 (277)
                      ....+...|++++|+.+|+++++++|+++.+++++|.++. ..|++++|+.+|++|++++|+++.++.++|.++.. .  
T Consensus        11 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~~~   88 (217)
T 2pl2_A           11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQL-KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA-LYR   88 (217)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hhh
Confidence            3456677899999999999999999999999999999997 89999999999999999999999999999999999 9  


Q ss_pred             ---------CCHHHHHHHHHHHHHhCCCC
Q 023753          257 ---------KDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       257 ---------Gd~deAi~~yekALeldPdD  276 (277)
                               |++++|+.+|++|++++|++
T Consensus        89 ~~~~~~~~~g~~~~A~~~~~~al~~~P~~  117 (217)
T 2pl2_A           89 QAEDRERGKGYLEQALSVLKDAERVNPRY  117 (217)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             hhhhhcccccCHHHHHHHHHHHHHhCccc
Confidence                     99999999999999999986

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.54  E-value=1.4e-13  Score=105.18  Aligned_cols=94  Identities=13%  Similarity=0.080  Sum_probs=88.6

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQ  254 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~---~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~  254 (277)
                      ..+...+++++|+.+|+++++.+|+++   .+++.+|.++. ..|++++|+.+|++++..+|++   +.+++.+|.++..
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~   88 (129)
T 2xev_A           10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY-ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG   88 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence            455668999999999999999999998   79999999997 8999999999999999999999   8999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC
Q 023753          255 AHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       255 ~~Gd~deAi~~yekALeldPdD  276 (277)
                       .|++++|+.+|+++++..|++
T Consensus        89 -~g~~~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           89 -EGKNTEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             -TTCHHHHHHHHHHHHHHSTTS
T ss_pred             -cCCHHHHHHHHHHHHHHCCCC
Confidence             999999999999999999986

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.53  E-value=1.9e-13  Score=107.73  Aligned_cols=94  Identities=21%  Similarity=0.120  Sum_probs=89.4

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ..+...+++++|+.+|+++++++|.++.+++++|.++. ..+++++|+.+|+++++++|+++.+++.+|.++.. .|+++
T Consensus        21 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~   98 (166)
T 1a17_A           21 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFR   98 (166)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hccHH
Confidence            45566899999999999999999999999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.+|+++++++|++
T Consensus        99 ~A~~~~~~a~~~~p~~  114 (166)
T 1a17_A           99 AALRDYETVVKVKPHD  114 (166)
T ss_dssp             HHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            9999999999999986

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.53  E-value=2.3e-14  Score=122.09  Aligned_cols=89  Identities=19%  Similarity=0.179  Sum_probs=82.1

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD----------FAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd----------~eeA~e~~ekALeldP~n~~al~~LA~ll~~~  255 (277)
                      .+.+++|++.|++|++++|+++.+|+++|.++. ..++          +++|+.+|++||+++|+++.+|+++|.+|.. 
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~-~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~-   92 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLL-ELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS-   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-
Confidence            367899999999999999999999999999886 5655          4699999999999999999999999999987 


Q ss_pred             c-----------CCHHHHHHHHHHHHHhCCCC
Q 023753          256 H-----------KDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       256 ~-----------Gd~deAi~~yekALeldPdD  276 (277)
                      +           +++++|+++|++||+++|++
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            6           48999999999999999986

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.53  E-value=6.9e-14  Score=142.81  Aligned_cols=96  Identities=20%  Similarity=0.207  Sum_probs=68.6

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      ++.++...|++++|+.+|++||+++|+++.+++++|.+|. ..|++++|+++|++|++++|+++.+++++|.+|.. +|+
T Consensus        15 LG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~-~g~   92 (723)
T 4gyw_A           15 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE-MQD   92 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCC
Confidence            3455666677777777777777777777777777777665 66777777777777777777777777777777776 777


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 023753          259 ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       259 ~deAi~~yekALeldPdD  276 (277)
                      +++|+++|++|++++|++
T Consensus        93 ~~~A~~~~~kAl~l~P~~  110 (723)
T 4gyw_A           93 VQGALQCYTRAIQINPAF  110 (723)
T ss_dssp             HHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            777777777777777764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.53  E-value=3.7e-13  Score=100.01  Aligned_cols=95  Identities=21%  Similarity=0.346  Sum_probs=90.0

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ...+...+++++|+.+|+++++.+|+++.+++.+|.++. ..+++++|+.+|++++.++|.++.++..+|.++.. .+++
T Consensus        16 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~   93 (125)
T 1na0_A           16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDY   93 (125)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCH
Confidence            356667899999999999999999999999999999987 79999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+.+|+++++++|++
T Consensus        94 ~~A~~~~~~~~~~~~~~  110 (125)
T 1na0_A           94 DEAIEYYQKALELDPNN  110 (125)
T ss_dssp             HHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhCCCc
Confidence            99999999999999976

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.51  E-value=1.4e-13  Score=116.74  Aligned_cols=97  Identities=11%  Similarity=0.169  Sum_probs=87.7

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA---  255 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~---  255 (277)
                      ...++...+++++|+.+|+++++++|+++.+++++|.++. ..|++++|+.+|++|++++|+++.+++++|.+|+..   
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~  138 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQV-CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ  138 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence            5567778899999999999999999999999999999997 899999999999999999999999999999877541   


Q ss_pred             -------------------------------cCCHHHHHHHHHHHHHhCCCC
Q 023753          256 -------------------------------HKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       256 -------------------------------~Gd~deAi~~yekALeldPdD  276 (277)
                                                     .+++++|+.+|++|++++|+.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          139 EKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence                                           246889999999999999973

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.50  E-value=1.5e-13  Score=140.31  Aligned_cols=97  Identities=22%  Similarity=0.148  Sum_probs=92.3

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G  257 (277)
                      .++.++...|++++|+.+|++||+++|+++.+|+++|.+|. ..|++++|+++|++|++++|+++.+++++|.+|.. +|
T Consensus        48 nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~-~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~-~g  125 (723)
T 4gyw_A           48 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK-EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-SG  125 (723)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC
Confidence            34577778899999999999999999999999999999997 89999999999999999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 023753          258 DASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       258 d~deAi~~yekALeldPdD  276 (277)
                      ++++|+++|++|++++|++
T Consensus       126 ~~~eAi~~~~~Al~l~P~~  144 (723)
T 4gyw_A          126 NIPEAIASYRTALKLKPDF  144 (723)
T ss_dssp             CHHHHHHHHHHHHHHCSCC
T ss_pred             CHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999986

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.49  E-value=3.4e-13  Score=112.26  Aligned_cols=94  Identities=12%  Similarity=0.033  Sum_probs=89.0

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNA----------------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI  244 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~----------------~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a  244 (277)
                      ..+...+++++|+.+|++++++.|.++                .+++++|.++. ..+++++|+.+|++|++++|+++.+
T Consensus        46 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~  124 (198)
T 2fbn_A           46 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVKA  124 (198)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCcccHHH
Confidence            455668999999999999999999998                89999999997 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       245 l~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ++.+|.++.. .+++++|+.+|+++++++|++
T Consensus       125 ~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~  155 (198)
T 2fbn_A          125 LYKLGVANMY-FGFLEEAKENLYKAASLNPNN  155 (198)
T ss_dssp             HHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHH-cccHHHHHHHHHHHHHHCCCc
Confidence            9999999999 999999999999999999986

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.49  E-value=1.9e-13  Score=116.62  Aligned_cols=87  Identities=21%  Similarity=0.158  Sum_probs=84.9

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF  266 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~y  266 (277)
                      |++++|+..|+++++++|+++.+++++|.++. ..|++++|+.+|++|++++ +++.++.++|.++.. .|++++|+.+|
T Consensus        98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~-~g~~~~A~~~~  174 (217)
T 2pl2_A           98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYA-LLGERDKAEASLKQALALE-DTPEIRSALAELYLS-MGRLDEALAQY  174 (217)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            89999999999999999999999999999997 8999999999999999999 999999999999999 99999999999


Q ss_pred             HHHHHhCCCC
Q 023753          267 DQAVKSAPDD  276 (277)
Q Consensus       267 ekALeldPdD  276 (277)
                      +++++++|++
T Consensus       175 ~~al~~~P~~  184 (217)
T 2pl2_A          175 AKALEQAPKD  184 (217)
T ss_dssp             HHHHHHSTTC
T ss_pred             HHHHHhCCCC
Confidence            9999999986

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.49  E-value=3.6e-13  Score=101.16  Aligned_cols=94  Identities=18%  Similarity=0.314  Sum_probs=88.2

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-------GNILSLYADLI  252 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n-------~~al~~LA~ll  252 (277)
                      ...+...+++++|+.+|+++++.+|.++.+++++|.++. ..+++++|+.+|++++.++|++       +.+++.+|.++
T Consensus        11 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~   89 (131)
T 1elr_A           11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY   89 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHH
Confidence            356667899999999999999999999999999999987 7999999999999999999887       99999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC
Q 023753          253 WQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       253 ~~~~Gd~deAi~~yekALeldPd  275 (277)
                      .. .+++++|+.+|++++++.|+
T Consensus        90 ~~-~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           90 FK-EEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HH-TTCHHHHHHHHHHHHHHCCC
T ss_pred             HH-hccHHHHHHHHHHHHHhCCC
Confidence            99 99999999999999999884

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.49  E-value=5.5e-13  Score=108.43  Aligned_cols=94  Identities=12%  Similarity=0.100  Sum_probs=61.6

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      +..+...|++++|+.+|++|++++|+++.++.++|.++. ..+++++|+.++++++..+|+++.++..+|.++.. .+++
T Consensus        12 G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   89 (184)
T 3vtx_A           12 GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYM-DIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM-IDEK   89 (184)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-cCCH
Confidence            366777899999999999999999999999999998876 66766666555555555555554444444444444 4444


Q ss_pred             HHHHHHHHHHHHhCCC
Q 023753          260 SRAESYFDQAVKSAPD  275 (277)
Q Consensus       260 deAi~~yekALeldPd  275 (277)
                      ++|+.+++++++++|+
T Consensus        90 ~~a~~~~~~a~~~~~~  105 (184)
T 3vtx_A           90 QAAIDALQRAIALNTV  105 (184)
T ss_dssp             HHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhCcc
Confidence            4444444444444443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.49  E-value=3.7e-13  Score=109.35  Aligned_cols=98  Identities=14%  Similarity=0.140  Sum_probs=90.2

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDF--AKAEELCGRAILANPSDGNILSLYADLIWQA  255 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~--eeA~e~~ekALeldP~n~~al~~LA~ll~~~  255 (277)
                      .+..++...+++++|+.+|+++++++|+++.++.++|.+++...+++  ++|+.+|+++++++|+++.+++.+|.+++. 
T Consensus        49 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-  127 (177)
T 2e2e_A           49 LLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM-  127 (177)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Confidence            34466777899999999999999999999999999999833378998  999999999999999999999999999999 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 023753          256 HKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       256 ~Gd~deAi~~yekALeldPdD  276 (277)
                      .|++++|+.+|+++++++|++
T Consensus       128 ~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A          128 QANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             TTCHHHHHHHHHHHHHTCCTT
T ss_pred             cccHHHHHHHHHHHHhhCCCC
Confidence            999999999999999999986

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.48  E-value=1.7e-13  Score=104.60  Aligned_cols=84  Identities=14%  Similarity=0.134  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023753          190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA  269 (277)
Q Consensus       190 deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekA  269 (277)
                      ++|+.+|+++++.+|+++.+++++|.++. ..+++++|+.+|++|++++|+++.+++.+|.++.. .|++++|+.+|+++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYA-EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG-QGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence            47899999999999999999999999997 89999999999999999999999999999999999 99999999999999


Q ss_pred             HHhCCC
Q 023753          270 VKSAPD  275 (277)
Q Consensus       270 LeldPd  275 (277)
                      ++++|.
T Consensus        80 l~~~~~   85 (115)
T 2kat_A           80 LAAAQS   85 (115)
T ss_dssp             HHHHHH
T ss_pred             HHhccc
Confidence            998874

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.48  E-value=3.6e-13  Score=123.45  Aligned_cols=95  Identities=16%  Similarity=0.091  Sum_probs=89.7

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGN---------------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI  244 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n---------------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a  244 (277)
                      +..+...+++++|+.+|++|++++|++               ..+++++|.++. ..+++++|+.+|++|++++|+++.+
T Consensus       154 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a  232 (336)
T 1p5q_A          154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKG  232 (336)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHH
Confidence            355666799999999999999999999               699999999997 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       245 l~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ++++|.+|.. ++++++|+.+|++|++++|++
T Consensus       233 ~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~  263 (336)
T 1p5q_A          233 LSRRGEAHLA-VNDFELARADFQKVLQLYPNN  263 (336)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCC
Confidence            9999999999 999999999999999999986

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.48  E-value=5.2e-13  Score=112.45  Aligned_cols=94  Identities=13%  Similarity=0.084  Sum_probs=89.6

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANP-GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP-~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ..+...+++++|+.+|+++++++| .+..+++++|.++. ..+++++|+.+|++|++++|+++.++..+|.++.. ++++
T Consensus        15 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~   92 (228)
T 4i17_A           15 NDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD-MKNN   92 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH-cccH
Confidence            556678999999999999999999 99999999999997 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+.+|+++++++|++
T Consensus        93 ~~A~~~~~~al~~~p~~  109 (228)
T 4i17_A           93 QEYIATLTEGIKAVPGN  109 (228)
T ss_dssp             HHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHCCCc
Confidence            99999999999999986

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.47  E-value=2.7e-13  Score=128.14  Aligned_cols=97  Identities=12%  Similarity=0.068  Sum_probs=84.4

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD-FAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd-~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~  256 (277)
                      +++.++...+++++|+.+|++||+++|+++.+|+++|.++. ..++ +++|+.+|++||+++|+++.+|+++|.++.. .
T Consensus       102 ~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~-~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~-~  179 (382)
T 2h6f_A          102 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK-SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-L  179 (382)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-c
Confidence            45566777788999999999999999999999999998886 6785 9999999999999999999999999998888 8


Q ss_pred             CCHHHHHHHHHHHHHhCCCC
Q 023753          257 KDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       257 Gd~deAi~~yekALeldPdD  276 (277)
                      |++++|+.+|++||+++|++
T Consensus       180 g~~~eAl~~~~kal~ldP~~  199 (382)
T 2h6f_A          180 RDPSQELEFIADILNQDAKN  199 (382)
T ss_dssp             TCCTTHHHHHHHHHHHCTTC
T ss_pred             cCHHHHHHHHHHHHHhCccC
Confidence            99999999999999998876

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.45  E-value=2.3e-13  Score=128.54  Aligned_cols=95  Identities=14%  Similarity=0.081  Sum_probs=89.0

Q ss_pred             HHHHHhCCC-cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          180 NNYSNNNHG-SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       180 ~~m~e~~Gd-~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      +.++...++ +++|+.+|++||+++|+++.+|+++|.++. ..+++++|+.+|++||+++|+++.+|+++|.++.. .|+
T Consensus       138 g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~-~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~-~g~  215 (382)
T 2h6f_A          138 RVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FKL  215 (382)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTC
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-cCC
Confidence            355666785 999999999999999999999999999997 88999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 023753          259 ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       259 ~deAi~~yekALeldPdD  276 (277)
                      +++|+.+|++||+++|++
T Consensus       216 ~~eAl~~~~~al~l~P~~  233 (382)
T 2h6f_A          216 WDNELQYVDQLLKEDVRN  233 (382)
T ss_dssp             CTTHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHhCCCC
Confidence            999999999999999986

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.45  E-value=1.3e-12  Score=110.82  Aligned_cols=96  Identities=10%  Similarity=0.097  Sum_probs=90.7

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      ....+...+++++|+.+|+++++++|+++.++.++|.++. ..+++++|+.+|++|++++|+++.++..+|.++.. .|+
T Consensus        49 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~  126 (275)
T 1xnf_A           49 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGR  126 (275)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTC
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH-hcc
Confidence            3466667899999999999999999999999999999997 89999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 023753          259 ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       259 ~deAi~~yekALeldPdD  276 (277)
                      +++|+.+|+++++++|++
T Consensus       127 ~~~A~~~~~~a~~~~~~~  144 (275)
T 1xnf_A          127 DKLAQDDLLAFYQDDPND  144 (275)
T ss_dssp             HHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            999999999999999986

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.45  E-value=3e-14  Score=118.15  Aligned_cols=85  Identities=12%  Similarity=0.064  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023753          191 STDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAV  270 (277)
Q Consensus       191 eAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekAL  270 (277)
                      .+...|+++++++|+++.+++++|.+++ ..|++++|+.+|++|+.++|+++.+|+++|.++.. .|++++|+.+|++|+
T Consensus        20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~Ai~~~~~al   97 (151)
T 3gyz_A           20 NSGATLKDINAIPDDMMDDIYSYAYDFY-NKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI-KEQFQQAADLYAVAF   97 (151)
T ss_dssp             HTSCCTGGGCCSCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred             HCCCCHHHHhCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HccHHHHHHHHHHHH
Confidence            3445788899999999999999999997 89999999999999999999999999999999999 999999999999999


Q ss_pred             HhCCCCC
Q 023753          271 KSAPDDW  277 (277)
Q Consensus       271 eldPdD~  277 (277)
                      +++|+++
T Consensus        98 ~l~P~~~  104 (151)
T 3gyz_A           98 ALGKNDY  104 (151)
T ss_dssp             HHSSSCC
T ss_pred             hhCCCCc
Confidence            9999974

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.45  E-value=1e-12  Score=108.72  Aligned_cols=96  Identities=9%  Similarity=0.024  Sum_probs=87.8

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG----------------  242 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~----------------  242 (277)
                      ....+...+++++|+.+|+++++++|+++.+++++|.++. ..+++++|+.+|++++++.|.+.                
T Consensus        43 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  121 (213)
T 1hh8_A           43 IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFAC  121 (213)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccch
Confidence            3456667899999999999999999999999999999987 79999999999999999888877                


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       243 ~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      .+++++|.++.. .|++++|+.+|+++++++|++
T Consensus       122 ~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          122 EVLYNIAFMYAK-KEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCccc
Confidence            999999999999 999999999999999999964

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.44  E-value=6.5e-13  Score=111.83  Aligned_cols=95  Identities=13%  Similarity=0.049  Sum_probs=89.2

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG-------NILSLYADL  251 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~-------~al~~LA~l  251 (277)
                      .+..+...+++++|+.+|+++++++|+++.++.++|.++. ..+++++|+.+|+++++++|+++       .++..+|.+
T Consensus        48 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~  126 (228)
T 4i17_A           48 CGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR-DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQK  126 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHH
Confidence            3466667899999999999999999999999999999997 89999999999999999999999       669999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          252 IWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       252 l~~~~Gd~deAi~~yekALeldPd  275 (277)
                      +.. .+++++|+.+|++|++++|+
T Consensus       127 ~~~-~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A          127 FQQ-AGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HHH-TTCHHHHHHHHHHHTTSSCH
T ss_pred             HHH-hccHHHHHHHHHHHHhcCCC
Confidence            999 99999999999999999997

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.44  E-value=4.2e-13  Score=119.69  Aligned_cols=95  Identities=17%  Similarity=0.084  Sum_probs=90.1

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      +..+...+++++|+.+|++|++++|+++.+++++|.++. ..+++++|+.+|++|++++|+++.+++++|.++.. .|++
T Consensus        11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~   88 (281)
T 2c2l_A           11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESY   88 (281)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCH
Confidence            356667899999999999999999999999999999997 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+.+|++|++++|++
T Consensus        89 ~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           89 DEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCccc
Confidence            99999999999999865

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.43  E-value=2.5e-12  Score=95.91  Aligned_cols=94  Identities=20%  Similarity=0.308  Sum_probs=72.9

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      .++...+++++|+.+|+++++.+|.++.+++++|.++. ..+++++|+.+|++++..+|.++.++..+|.++.. .++++
T Consensus        43 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~  120 (136)
T 2fo7_A           43 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYD  120 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-HccHH
Confidence            44445677888888888888888888877878887775 67788888888888888888888778888887777 78888


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.+|+++++.+|++
T Consensus       121 ~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          121 EAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHccCCCC
Confidence            8888888888877763

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.42  E-value=9.8e-13  Score=125.74  Aligned_cols=94  Identities=14%  Similarity=0.117  Sum_probs=87.2

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGN---------------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNIL  245 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n---------------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al  245 (277)
                      ..+...+++++|+.+|++|++++|.+               ..+++++|.++. ..+++++|+.+|++|++++|+++.++
T Consensus       276 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~  354 (457)
T 1kt0_A          276 TVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKGL  354 (457)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHH
Confidence            55667899999999999999999999               799999999997 89999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          246 SLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       246 ~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +++|.+|+. ++++++|+.+|++|++++|++
T Consensus       355 ~~~g~a~~~-~g~~~~A~~~~~~al~l~P~~  384 (457)
T 1kt0_A          355 YRRGEAQLL-MNEFESAKGDFEKVLEVNPQN  384 (457)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHH-ccCHHHHHHHHHHHHHhCCCC
Confidence            999999999 999999999999999999986

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.41  E-value=4.7e-12  Score=94.41  Aligned_cols=95  Identities=20%  Similarity=0.306  Sum_probs=88.8

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ...+...+++++|+.+|+++++.+|.++.+++.+|.++. ..+++++|+.+|++++..+|.++.++..+|.++.. .+++
T Consensus         8 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~   85 (136)
T 2fo7_A            8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDY   85 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCH
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHH-HhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-hcCH
Confidence            355566799999999999999999999999999999887 78999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+.+|+++++..|++
T Consensus        86 ~~A~~~~~~~~~~~~~~  102 (136)
T 2fo7_A           86 DEAIEYYQKALELDPRS  102 (136)
T ss_dssp             HHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            99999999999999875

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.41  E-value=2.5e-12  Score=107.36  Aligned_cols=94  Identities=20%  Similarity=0.110  Sum_probs=88.7

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G  257 (277)
                      ....++...+++++|+.+|+++++++|.++.++.++|.++. ..+++++|+.+|+++++++|+++.++..+|.++.. .|
T Consensus       144 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g  221 (258)
T 3uq3_A          144 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VK  221 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-Hh
Confidence            34466777899999999999999999999999999999987 89999999999999999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHhC
Q 023753          258 DASRAESYFDQAVKSA  273 (277)
Q Consensus       258 d~deAi~~yekALeld  273 (277)
                      ++++|+.+|+++++++
T Consensus       222 ~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          222 EYASALETLDAARTKD  237 (258)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhC
Confidence            9999999999999999

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.41  E-value=3.2e-12  Score=100.93  Aligned_cols=95  Identities=19%  Similarity=0.043  Sum_probs=75.4

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ..++...+++++|+.+|+++++.+|.++.++..+|.++. ..+++++|+.+|+++++.+|.++.++..+|.++.. .|++
T Consensus        83 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~  160 (186)
T 3as5_A           83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD-NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ-MGRH  160 (186)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHH-HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCH
Confidence            345556678888888888888888888888888887776 67888888888888888888888888888888877 8888


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+.+|+++++++|++
T Consensus       161 ~~A~~~~~~~~~~~~~~  177 (186)
T 3as5_A          161 EEALPHFKKANELDEGA  177 (186)
T ss_dssp             HHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHcCCCc
Confidence            88888888888877765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.41  E-value=2.9e-13  Score=109.96  Aligned_cols=84  Identities=8%  Similarity=-0.064  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753          192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVK  271 (277)
Q Consensus       192 Ai~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALe  271 (277)
                      +...|+++++++|+++.+++++|.++. ..|++++|+.+|++|+.++|+++.+++.+|.++.. .|++++|+.+|++|++
T Consensus         6 ~~~~~~~al~~~p~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQLYSLAFNQY-QSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA-MGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHcCCHhhHHHHHHHHHHHH-HcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh
Confidence            345799999999999999999999997 89999999999999999999999999999999999 9999999999999999


Q ss_pred             hCCCCC
Q 023753          272 SAPDDW  277 (277)
Q Consensus       272 ldPdD~  277 (277)
                      ++|+++
T Consensus        84 l~p~~~   89 (148)
T 2vgx_A           84 MDIXEP   89 (148)
T ss_dssp             HSTTCT
T ss_pred             cCCCCc
Confidence            999874

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.40  E-value=6.7e-12  Score=99.07  Aligned_cols=96  Identities=14%  Similarity=0.025  Sum_probs=88.5

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      ...++...+++++|+.+|+++++.+|.++.++.++|.++. ..+++++|+.+|++++..+|.++.++..+|.++.. .++
T Consensus        48 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~  125 (186)
T 3as5_A           48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV-QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN-LGR  125 (186)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH-cCc
Confidence            3456677899999999999999999999999999999887 78999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 023753          259 ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       259 ~deAi~~yekALeldPdD  276 (277)
                      +++|+.+|+++++.+|++
T Consensus       126 ~~~A~~~~~~~~~~~~~~  143 (186)
T 3as5_A          126 FDEAIDSFKIALGLRPNE  143 (186)
T ss_dssp             HHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhcCccc
Confidence            999999999999999875

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.38  E-value=1.7e-12  Score=121.48  Aligned_cols=94  Identities=20%  Similarity=0.148  Sum_probs=89.3

Q ss_pred             HHHHhCCCcHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIE----------------ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI  244 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALe----------------ldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a  244 (277)
                      ..+...+++++|+.+|++|++                ++|.++.+++++|.++. ..+++++|+.+|++|++++|+++.+
T Consensus       231 ~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a  309 (370)
T 1ihg_A          231 NTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTKA  309 (370)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHhCchhHHH
Confidence            556678999999999999999                88889999999999997 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       245 l~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ++.+|.+|.. ++++++|+.+|++|++++|++
T Consensus       310 ~~~lg~~~~~-~g~~~eA~~~l~~Al~l~P~~  340 (370)
T 1ihg_A          310 LYRRAQGWQG-LKEYDQALADLKKAQEIAPED  340 (370)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCC
Confidence            9999999999 999999999999999999986

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.37  E-value=3e-12  Score=123.46  Aligned_cols=92  Identities=21%  Similarity=0.119  Sum_probs=88.0

Q ss_pred             HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 023753          183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA  262 (277)
Q Consensus       183 ~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deA  262 (277)
                      +...+++++|+.+|++|++++|+++.+++++|.++. ..+++++|+++|++|++++|+++.+++++|.+|.. +|++++|
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~~eA   93 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRAA   93 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HTCHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHH
Confidence            345699999999999999999999999999999997 89999999999999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHhCCCC
Q 023753          263 ESYFDQAVKSAPDD  276 (277)
Q Consensus       263 i~~yekALeldPdD  276 (277)
                      +++|++|++++|++
T Consensus        94 ~~~~~~al~~~p~~  107 (477)
T 1wao_1           94 LRDYETVVKVKPHD  107 (477)
T ss_dssp             HHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHhCCCC
Confidence            99999999999986

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.37  E-value=3.2e-12  Score=114.19  Aligned_cols=95  Identities=13%  Similarity=-0.046  Sum_probs=79.2

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      +..++...+++++|+.+|+++++++|+++.+|+++|.++. ..|++++|+.+|+++++++|+++.++.++|.++.. .|+
T Consensus       219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~  296 (365)
T 4eqf_A          219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA-NGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN-LGA  296 (365)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-CCC
Confidence            3455566688888888888888888888888888888886 78888888888888888888888888888888888 888


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 023753          259 ASRAESYFDQAVKSAPD  275 (277)
Q Consensus       259 ~deAi~~yekALeldPd  275 (277)
                      +++|+.+|++|++++|+
T Consensus       297 ~~~A~~~~~~al~~~~~  313 (365)
T 4eqf_A          297 YREAVSNFLTALSLQRK  313 (365)
T ss_dssp             CHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCcc
Confidence            88888888888888776

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.37  E-value=6.2e-12  Score=104.61  Aligned_cols=96  Identities=13%  Similarity=0.112  Sum_probs=73.5

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      +..++...+++++|+.+|+++++++|+++.++..+|.++. ..+++++|+.+|+++++.+|+++.++..+|.++.. .|+
T Consensus       131 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~  208 (243)
T 2q7f_A          131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA-NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY-KEN  208 (243)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTC
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-ccC
Confidence            3455566677778888888888877777777777777775 67777888888888888878777777777777777 778


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 023753          259 ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       259 ~deAi~~yekALeldPdD  276 (277)
                      +++|+.+|+++++++|++
T Consensus       209 ~~~A~~~~~~~~~~~p~~  226 (243)
T 2q7f_A          209 REKALEMLDKAIDIQPDH  226 (243)
T ss_dssp             TTHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHccCcch
Confidence            888888888888777765

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.36  E-value=2.1e-12  Score=104.85  Aligned_cols=90  Identities=12%  Similarity=0.219  Sum_probs=81.7

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHcCCH--HH
Q 023753          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL-IWQAHKDA--SR  261 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l-l~~~~Gd~--de  261 (277)
                      ..+++++|+.+|+++++.+|+++.+++.+|.++. ..+++++|+.+|++|++++|+++.++..+|.+ ++. .+++  ++
T Consensus        22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~-~~~~~~~~   99 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYL-WQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ-ASQHMTAQ   99 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH-TTTCCCHH
T ss_pred             hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-cCCcchHH
Confidence            3578999999999999999999999999999997 89999999999999999999999999999999 667 8998  99


Q ss_pred             HHHHHHHHHHhCCCC
Q 023753          262 AESYFDQAVKSAPDD  276 (277)
Q Consensus       262 Ai~~yekALeldPdD  276 (277)
                      |+.+|+++++++|++
T Consensus       100 A~~~~~~al~~~p~~  114 (177)
T 2e2e_A          100 TRAMIDKALALDSNE  114 (177)
T ss_dssp             HHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCc
Confidence            999999999999986

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.36  E-value=1.6e-11  Score=102.12  Aligned_cols=95  Identities=17%  Similarity=0.289  Sum_probs=79.9

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ...+...+++++|+.+|+++++++|.++.++..+|.++. ..+++++|+.+|+++++++|.++.++..+|.++.. .+++
T Consensus        64 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~  141 (243)
T 2q7f_A           64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV-VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK-LEQP  141 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-TSCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hccH
Confidence            455666788888888888888888888888888888876 78888888888888888888888888888888888 8888


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+.+|+++++++|++
T Consensus       142 ~~A~~~~~~~~~~~~~~  158 (243)
T 2q7f_A          142 KLALPYLQRAVELNEND  158 (243)
T ss_dssp             HHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhCCcc
Confidence            88888888888888865

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.36  E-value=1.9e-12  Score=102.60  Aligned_cols=77  Identities=18%  Similarity=0.145  Sum_probs=71.9

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          198 KMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       198 kALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ++..+||+.+.++.++|..++ ..|+|++|+++|++||+++|+++.++.++|.+++. +|++++|+..|++||+++|++
T Consensus         4 r~a~inP~~a~~~~~~G~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~   80 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYF-KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LMEFQRALDDCDTCIRLDSKF   80 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hccHHHHHHHHHHHHHhhhhh
Confidence            455689999999999999998 89999999999999999999999999999999999 999999999999999999986

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.36  E-value=6.2e-12  Score=113.01  Aligned_cols=93  Identities=14%  Similarity=0.146  Sum_probs=81.9

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 023753          182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR  261 (277)
Q Consensus       182 m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de  261 (277)
                      ++...+++++|+.+|+++++.+|+++.+++++|.++. ..|++++|+.+|++|++++|+++.++.+++.++.. .|++++
T Consensus       175 l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~-~g~~~e  252 (291)
T 3mkr_A          175 LAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM-AQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH-LGKPPE  252 (291)
T ss_dssp             HHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHH
T ss_pred             HHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCCHH
Confidence            3344578899999999999999999999999998886 89999999999999999999999999999999988 888865


Q ss_pred             -HHHHHHHHHHhCCCC
Q 023753          262 -AESYFDQAVKSAPDD  276 (277)
Q Consensus       262 -Ai~~yekALeldPdD  276 (277)
                       |..+++++++++|++
T Consensus       253 aa~~~~~~~~~~~P~~  268 (291)
T 3mkr_A          253 VTNRYLSQLKDAHRSH  268 (291)
T ss_dssp             HHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhCCCC
Confidence             578999999999986

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.35  E-value=1.5e-12  Score=119.63  Aligned_cols=94  Identities=19%  Similarity=0.093  Sum_probs=83.3

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNA-----------------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN  243 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~-----------------~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~  243 (277)
                      ..+...+++++|+.+|++|++++|++.                 .+++++|.++. ..+++++|+.+|++|++++|+++.
T Consensus       187 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~  265 (338)
T 2if4_A          187 NSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI-KLKRYDEAIGHCNIVLTEEEKNPK  265 (338)
T ss_dssp             HHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHH
Confidence            344457999999999999999999987                 38999999997 899999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       244 al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +++++|.+|.. ++++++|+.+|++|++++|++
T Consensus       266 a~~~lg~a~~~-~g~~~~A~~~l~~al~l~p~~  297 (338)
T 2if4_A          266 ALFRRGKAKAE-LGQMDSARDDFRKAQKYAPDD  297 (338)
T ss_dssp             HHHHHHHHHHT-TTCHHHHHHHHHHTTC-----
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCC
Confidence            99999999999 999999999999999999986

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.35  E-value=5.1e-12  Score=112.84  Aligned_cols=94  Identities=15%  Similarity=0.033  Sum_probs=89.2

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ...+...+++++|+.+|+++++++|+++.+++++|.++. ..|++++|+.+|++|++++|+++.++..+|.++.. .|++
T Consensus        72 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~  149 (365)
T 4eqf_A           72 GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQA-ENENEQAAIVALQRCLELQPNNLKALMALAVSYTN-TSHQ  149 (365)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc-cccH
Confidence            356666799999999999999999999999999999997 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCC
Q 023753          260 SRAESYFDQAVKSAPD  275 (277)
Q Consensus       260 deAi~~yekALeldPd  275 (277)
                      ++|+.+|+++++++|+
T Consensus       150 ~~A~~~~~~al~~~p~  165 (365)
T 4eqf_A          150 QDACEALKNWIKQNPK  165 (365)
T ss_dssp             HHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHhCcc
Confidence            9999999999999886

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.35  E-value=8.2e-12  Score=110.51  Aligned_cols=96  Identities=13%  Similarity=0.005  Sum_probs=78.0

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      ...++...+++++|+.+|+++++++|+++.+++++|.++. ..|++++|+.+|+++++++|+++.++..+|.++.. .|+
T Consensus       223 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~  300 (368)
T 1fch_A          223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGA  300 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCC
Confidence            3456666788888888888888888888888888888776 78888888888888888888888888888888888 888


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 023753          259 ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       259 ~deAi~~yekALeldPdD  276 (277)
                      +++|+.+|+++++++|++
T Consensus       301 ~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          301 HREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            888888888888887764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.35  E-value=1.4e-12  Score=103.62  Aligned_cols=82  Identities=6%  Similarity=-0.092  Sum_probs=75.4

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753          194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       194 ~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeld  273 (277)
                      ..|+++++++|++..+++.+|..+. ..|++++|+.+|++++.++|+++.+++.+|.++.. .+++++|+.+|++|++++
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQY-QAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-LGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcC
Confidence            5788999999999999999999987 89999999999999999999999999999999999 999999999999999999


Q ss_pred             CCCC
Q 023753          274 PDDW  277 (277)
Q Consensus       274 PdD~  277 (277)
                      |+++
T Consensus        83 p~~~   86 (142)
T 2xcb_A           83 INEP   86 (142)
T ss_dssp             TTCT
T ss_pred             CCCc
Confidence            9874

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.34  E-value=8.5e-12  Score=120.40  Aligned_cols=95  Identities=15%  Similarity=0.162  Sum_probs=77.3

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ..++...+++++|+.+|++|++++|+++.+++++|.++. ..|++++|+++|++|++++|+++.+++++|.++.. .|++
T Consensus        30 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~  107 (568)
T 2vsy_A           30 ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED-AGQA  107 (568)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCH
Confidence            355556688888888888888888888888888888776 67888888888888888888888888888888887 8888


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+++|+++++++|++
T Consensus       108 ~~A~~~~~~al~~~p~~  124 (568)
T 2vsy_A          108 EAAAAAYTRAHQLLPEE  124 (568)
T ss_dssp             HHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            88888888888888865

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.33  E-value=4.1e-12  Score=121.60  Aligned_cols=96  Identities=10%  Similarity=-0.123  Sum_probs=89.9

Q ss_pred             HHHHHHhC---------CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC--
Q 023753          179 NNNYSNNN---------HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR--------GDFAKAEELCGRAILANP--  239 (277)
Q Consensus       179 Y~~m~e~~---------Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~--------Gd~eeA~e~~ekALeldP--  239 (277)
                      +..++...         +++++|+.+|++|++++|+++.+|+++|.+|. ..        +++++|+.+|++|++++|  
T Consensus       176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  254 (474)
T 4abn_A          176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYL-SLYFNTGQNPKISQQALSAYAQAEKVDRKA  254 (474)
T ss_dssp             HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence            34556666         89999999999999999999999999999987 67        899999999999999999  


Q ss_pred             -CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          240 -SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       240 -~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                       +++.+++++|.+|+. .|++++|+.+|++|++++|++
T Consensus       255 ~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~  291 (474)
T 4abn_A          255 SSNPDLHLNRATLHKY-EESYGEALEGFSQAAALDPAW  291 (474)
T ss_dssp             GGCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             ccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Confidence             999999999999999 999999999999999999986

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.33  E-value=1.9e-11  Score=108.12  Aligned_cols=96  Identities=9%  Similarity=0.007  Sum_probs=91.1

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      ....+...+++++|+.+|+++++++|+++.+++++|.++. ..|++++|+.+|+++++++|+++.++..+|.++.. .|+
T Consensus        70 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~  147 (368)
T 1fch_A           70 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQELLAISALRRCLELKPDNQTALMALAVSFTN-ESL  147 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCC
Confidence            3466777899999999999999999999999999999997 89999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 023753          259 ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       259 ~deAi~~yekALeldPdD  276 (277)
                      +++|+.+|+++++++|++
T Consensus       148 ~~~A~~~~~~~~~~~~~~  165 (368)
T 1fch_A          148 QRQACEILRDWLRYTPAY  165 (368)
T ss_dssp             HHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHHHHhCcCc
Confidence            999999999999999975

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.33  E-value=1.3e-11  Score=101.99  Aligned_cols=91  Identities=11%  Similarity=0.077  Sum_probs=84.4

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ..+...+++++|+.+|++++  +| ++.+++++|.++. ..+++++|+.+|++|+.++|+++.+++++|.++.. .++++
T Consensus        14 ~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~   88 (213)
T 1hh8_A           14 VLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYD   88 (213)
T ss_dssp             HHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cccHH
Confidence            55567899999999999996  44 7899999999997 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.+|++++++.|++
T Consensus        89 ~A~~~~~~al~~~~~~  104 (213)
T 1hh8_A           89 LAIKDLKEALIQLRGN  104 (213)
T ss_dssp             HHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHhCCCc
Confidence            9999999999999875

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.33  E-value=1.4e-11  Score=102.86  Aligned_cols=96  Identities=19%  Similarity=0.135  Sum_probs=87.9

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIE--------------------------ANPGNALLLGNYARFLKEVRGDFAKAEELCG  232 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALe--------------------------ldP~n~~al~nLA~lL~e~~Gd~eeA~e~~e  232 (277)
                      ...++...+++++|+.+|+++++                          .+|.++.++.++|.++. ..+++++|+.+|+
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~  163 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF-TKSDWPNAVKAYT  163 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH-HhcCHHHHHHHHH
Confidence            33566677899999999999988                          77778899999999987 8999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          233 RAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       233 kALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ++++++|.++.++..+|.++.. .+++++|+.+|+++++++|++
T Consensus       164 ~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~  206 (258)
T 3uq3_A          164 EMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNF  206 (258)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHhcCcccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCHHH
Confidence            9999999999999999999999 999999999999999999985

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.32  E-value=2.4e-11  Score=109.58  Aligned_cols=94  Identities=20%  Similarity=0.235  Sum_probs=65.3

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      .++...+++++|+..|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++..+|.++.. .|+++
T Consensus       211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~  288 (388)
T 1w3b_A          211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY-EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE-KGSVA  288 (388)
T ss_dssp             HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH-HSCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHH
Confidence            44445566677777777777777777777777776665 56777777777777777777777777777777766 67777


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.+|+++++++|++
T Consensus       289 ~A~~~~~~al~~~p~~  304 (388)
T 1w3b_A          289 EAEDCYNTALRLCPTH  304 (388)
T ss_dssp             HHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhhCccc
Confidence            7777777777776654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.31  E-value=9.5e-12  Score=105.79  Aligned_cols=97  Identities=13%  Similarity=0.220  Sum_probs=87.5

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G  257 (277)
                      ....++...+++++|+.+|+++++++|+++.++.++|.++. ..+++++|+.+|+++++++|+++.++..+|..++. .+
T Consensus        79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~  156 (272)
T 3u4t_A           79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY-NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NK  156 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HH
Confidence            44567778899999999999999999999999999999987 89999999999999999999999999999944445 57


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 023753          258 DASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       258 d~deAi~~yekALeldPdD  276 (277)
                      ++++|+.+|+++++++|++
T Consensus       157 ~~~~A~~~~~~a~~~~p~~  175 (272)
T 3u4t_A          157 EYVKADSSFVKVLELKPNI  175 (272)
T ss_dssp             CHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHHhCccc
Confidence            9999999999999999985

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.31  E-value=1.5e-11  Score=109.63  Aligned_cols=94  Identities=12%  Similarity=0.003  Sum_probs=84.5

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAE--------------------------------  228 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~--------------------------------  228 (277)
                      ..+...|++++|+..|+++++++|+++.+++++|.++. ..|++++|+                                
T Consensus       125 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~  203 (287)
T 3qou_A          125 MQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLI-ALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTP  203 (287)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-HTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-HCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCc
Confidence            44556799999999999999999999999999999886 788888765                                


Q ss_pred             --HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          229 --ELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       229 --e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                        +.|++|++++|+++.+++++|.++.. .|++++|+..|+++++.+|++
T Consensus       204 a~~~l~~al~~~P~~~~~~~~la~~l~~-~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          204 EIQQLQQQVAENPEDAALATQLALQLHQ-VGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTG
T ss_pred             cHHHHHHHHhcCCccHHHHHHHHHHHHH-cccHHHHHHHHHHHHhccccc
Confidence              44566688899999999999999999 999999999999999999975

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.31  E-value=8.2e-12  Score=119.50  Aligned_cols=95  Identities=13%  Similarity=0.065  Sum_probs=89.4

Q ss_pred             HHHHHHhCCCc-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-
Q 023753          179 NNNYSNNNHGS-SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH-  256 (277)
Q Consensus       179 Y~~m~e~~Gd~-deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~-  256 (277)
                      .+.++...+++ ++|+.+|++|++++|+++.+|+++|.+|. ..|++++|+++|++|++++|+ +.++.++|.++.. . 
T Consensus       108 lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~-~~  184 (474)
T 4abn_A          108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQ-LQ  184 (474)
T ss_dssp             HHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTT-CC
T ss_pred             HHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHH-hc
Confidence            33666677999 99999999999999999999999999997 899999999999999999999 7999999999998 9 


Q ss_pred             --------CCHHHHHHHHHHHHHhCCCC
Q 023753          257 --------KDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       257 --------Gd~deAi~~yekALeldPdD  276 (277)
                              +++++|+.+|++|++++|++
T Consensus       185 ~~~~~~~~g~~~~A~~~~~~al~~~p~~  212 (474)
T 4abn_A          185 TDSGDEHSRHVMDSVRQAKLAVQMDVLD  212 (474)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             cCChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence                    99999999999999999986

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.30  E-value=2.8e-11  Score=105.31  Aligned_cols=93  Identities=14%  Similarity=0.097  Sum_probs=88.8

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ...+...|++++|+.+|+++++.+|+++.+++++|.++. ..+++++|+.+|+++++++|+++.++..+|.++.. .|++
T Consensus        10 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~   87 (359)
T 3ieg_A           10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK-QGKL   87 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH-cCCh
Confidence            356667899999999999999999999999999999997 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCC
Q 023753          260 SRAESYFDQAVKSAP  274 (277)
Q Consensus       260 deAi~~yekALeldP  274 (277)
                      ++|+.+|+++++++|
T Consensus        88 ~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           88 DEAEDDFKKVLKSNP  102 (359)
T ss_dssp             HHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhcCC
Confidence            999999999999998

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.30  E-value=3.3e-11  Score=103.99  Aligned_cols=95  Identities=17%  Similarity=0.079  Sum_probs=86.7

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      ...++...+++++|+.+|+++++.+|+++.++.++|.++. ..+++++|+.+|+++++++|+++.++..+|.++.. .|+
T Consensus       178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~g~  255 (327)
T 3cv0_A          178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLA-NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN-MSQ  255 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTC
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hcc
Confidence            3456667899999999999999999999999999999887 78999999999999999999999999999999998 999


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 023753          259 ASRAESYFDQAVKSAPD  275 (277)
Q Consensus       259 ~deAi~~yekALeldPd  275 (277)
                      +++|+.+|+++++++|+
T Consensus       256 ~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          256 YDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCc
Confidence            99999999999999887

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.30  E-value=3.3e-11  Score=98.45  Aligned_cols=87  Identities=16%  Similarity=0.179  Sum_probs=35.5

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCCHHHH
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR-GDFAKAEELCGRAIL--ANPSDGNILSLYADLIWQAHKDASRA  262 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~-Gd~eeA~e~~ekALe--ldP~n~~al~~LA~ll~~~~Gd~deA  262 (277)
                      .+++++|+.+|+++++++|+++.++.++|.++. .. +++++|+.+|+++++  .+|.+..++..+|.++.. .|++++|
T Consensus        55 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A  132 (225)
T 2vq2_A           55 LKVNDKAQESFRQALSIKPDSAEINNNYGWFLC-GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK-QGQFGLA  132 (225)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH-TTCHHHH
T ss_pred             cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH-cCCHHHH
Confidence            344444444444444444444444444444333 33 444444444444444  233333344444444443 4444444


Q ss_pred             HHHHHHHHHhCC
Q 023753          263 ESYFDQAVKSAP  274 (277)
Q Consensus       263 i~~yekALeldP  274 (277)
                      +.+|+++++.+|
T Consensus       133 ~~~~~~~~~~~~  144 (225)
T 2vq2_A          133 EAYLKRSLAAQP  144 (225)
T ss_dssp             HHHHHHHHHHST
T ss_pred             HHHHHHHHHhCC
Confidence            444444444433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.30  E-value=8.9e-12  Score=94.31  Aligned_cols=72  Identities=13%  Similarity=0.100  Sum_probs=65.6

Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          202 ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       202 ldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                      .+|+++.+++++|.++. ..|++++|+.+|++|++++|+++.+++++|.++.. .|++++|+.+|++++++.|.
T Consensus         2 ~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHL-KHDNASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             ---CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhhc
Confidence            48999999999999997 89999999999999999999999999999999999 99999999999999988764

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.29  E-value=3.1e-11  Score=101.73  Aligned_cols=95  Identities=19%  Similarity=0.276  Sum_probs=68.8

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcC
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL--ANPSDGNILSLYADLIWQAHK  257 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALe--ldP~n~~al~~LA~ll~~~~G  257 (277)
                      ..++...+++++|+.+|+++++++|.++.++.++|.++. ..+++++|+.+|++++.  .+|.++.++..+|.++.. .|
T Consensus        78 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g  155 (252)
T 2ho1_A           78 AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY-EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ-MK  155 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH-cC
Confidence            355556677777777777777777777777777777665 67777777777777777  667777777777777777 77


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 023753          258 DASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       258 d~deAi~~yekALeldPdD  276 (277)
                      ++++|+.+|+++++.+|++
T Consensus       156 ~~~~A~~~~~~~~~~~~~~  174 (252)
T 2ho1_A          156 KPAQAKEYFEKSLRLNRNQ  174 (252)
T ss_dssp             CHHHHHHHHHHHHHHCSCC
T ss_pred             CHHHHHHHHHHHHhcCccc
Confidence            7777777777777777654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.29  E-value=3.9e-11  Score=98.03  Aligned_cols=90  Identities=19%  Similarity=0.205  Sum_probs=85.8

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-CC
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH-KD  258 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~-Gd  258 (277)
                      ...+...+++++|+.+|+++++++|+++.++..+|.++. ..+++++|+.+|++++.++|+++.++..+|.++.. . ++
T Consensus        15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~   92 (225)
T 2vq2_A           15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQ-YLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG-RLNR   92 (225)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCC
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCc
Confidence            456667899999999999999999999999999999987 89999999999999999999999999999999999 9 99


Q ss_pred             HHHHHHHHHHHHH
Q 023753          259 ASRAESYFDQAVK  271 (277)
Q Consensus       259 ~deAi~~yekALe  271 (277)
                      +++|+.+|+++++
T Consensus        93 ~~~A~~~~~~~~~  105 (225)
T 2vq2_A           93 PAESMAYFDKALA  105 (225)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999999999

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.29  E-value=4.2e-11  Score=104.15  Aligned_cols=95  Identities=14%  Similarity=0.157  Sum_probs=87.6

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNAL----LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~----al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~  255 (277)
                      ...+...+++++|+.+|+++++.+|+++.    ++..+|.++. ..+++++|+.+|+++++++|+++.++..+|.++.. 
T Consensus       241 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-  318 (359)
T 3ieg_A          241 AEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS-KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI-  318 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-
Confidence            34467789999999999999999999984    4667898887 89999999999999999999999999999999999 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 023753          256 HKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       256 ~Gd~deAi~~yekALeldPdD  276 (277)
                      .|++++|+.+|+++++++|++
T Consensus       319 ~g~~~~A~~~~~~a~~~~p~~  339 (359)
T 3ieg_A          319 EEMYDEAIQDYEAAQEHNEND  339 (359)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTC
T ss_pred             cCCHHHHHHHHHHHHhcCCCC
Confidence            999999999999999999986

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.29  E-value=5.2e-11  Score=100.35  Aligned_cols=96  Identities=18%  Similarity=0.126  Sum_probs=84.7

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      +..++...+++++|+.+|+++++.+|.++.++..+|.++. ..+++++|+.+|+++++.+|+++.++..++.++.. .++
T Consensus       147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~  224 (252)
T 2ho1_A          147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLY-KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV-FED  224 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH-TTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-ccC
Confidence            3456667789999999999999999999999999998886 78999999999999999999999999999998888 899


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 023753          259 ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       259 ~deAi~~yekALeldPdD  276 (277)
                      +++|+.+|+++++++|++
T Consensus       225 ~~~A~~~~~~~~~~~p~~  242 (252)
T 2ho1_A          225 RDTAASYGLQLKRLYPGS  242 (252)
T ss_dssp             HHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHHHHCCCC
Confidence            999999999999998876

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.29  E-value=2.6e-11  Score=109.35  Aligned_cols=95  Identities=20%  Similarity=0.206  Sum_probs=79.5

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ..++...+++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++..+|.++.. .|++
T Consensus       244 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~  321 (388)
T 1w3b_A          244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-QGNI  321 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-cCCH
Confidence            355666788888888888888888888888888888876 78888888888888888888888888888888887 8888


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+.+|+++++++|++
T Consensus       322 ~~A~~~~~~al~~~p~~  338 (388)
T 1w3b_A          322 EEAVRLYRKALEVFPEF  338 (388)
T ss_dssp             HHHHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHHHHhcCCCc
Confidence            88888888888888865

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.28  E-value=5.3e-11  Score=100.74  Aligned_cols=94  Identities=14%  Similarity=0.014  Sum_probs=69.8

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G  257 (277)
                      ....++...+++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++..++.+ .. .+
T Consensus        82 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~  158 (275)
T 1xnf_A           82 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQ-KL  158 (275)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HH-HH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HH-hc
Confidence            34467777899999999999999999999999999999997 89999999999999999999986433332222 22 24


Q ss_pred             CHHHHHHHHHHHHHhCC
Q 023753          258 DASRAESYFDQAVKSAP  274 (277)
Q Consensus       258 d~deAi~~yekALeldP  274 (277)
                      ++++|+.+|++++...|
T Consensus       159 ~~~~A~~~~~~~~~~~~  175 (275)
T 1xnf_A          159 DEKQAKEVLKQHFEKSD  175 (275)
T ss_dssp             CHHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHHhcCC
Confidence            44444444444444333

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.28  E-value=6.5e-11  Score=102.19  Aligned_cols=95  Identities=13%  Similarity=-0.012  Sum_probs=89.9

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ...+...+++++|+.+|+++++.+|+++.++..+|.++. ..+++++|+.+|+++++++|+++.++..+|.++.. .+++
T Consensus        28 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~  105 (327)
T 3cv0_A           28 GLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNA  105 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH-cCCH
Confidence            355667899999999999999999999999999999987 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+.+|+++++.+|++
T Consensus       106 ~~A~~~~~~~~~~~~~~  122 (327)
T 3cv0_A          106 NAALASLRAWLLSQPQY  122 (327)
T ss_dssp             HHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHHHhCCcc
Confidence            99999999999999975

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.28  E-value=1.3e-12  Score=96.90  Aligned_cols=88  Identities=15%  Similarity=0.122  Sum_probs=79.3

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNILSLYADLIW  253 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n------~~al~~LA~ll~  253 (277)
                      +..+...+++++|+.+|+++++++|+++.+++++|.++. ..+++++|+.+|++|++++|++      ..+++.+|.++.
T Consensus        11 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~   89 (111)
T 2l6j_A           11 GNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQG   89 (111)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence            355667899999999999999999999999999999997 8999999999999999999999      889999999998


Q ss_pred             HHcCCHHHHHHHHHHH
Q 023753          254 QAHKDASRAESYFDQA  269 (277)
Q Consensus       254 ~~~Gd~deAi~~yekA  269 (277)
                      . .+++++|+..|++.
T Consensus        90 ~-~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           90 A-VGSVQIPVVEVDEL  104 (111)
T ss_dssp             H-HHCCCCCSSSSSSC
T ss_pred             H-HHhHhhhHhHHHHh
Confidence            8 88888887766553

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.27  E-value=4.7e-11  Score=115.23  Aligned_cols=97  Identities=11%  Similarity=0.037  Sum_probs=91.9

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH-  256 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~-  256 (277)
                      .+..++...+++++|+.+|+++++++|+++.+++++|.++. ..|++++|+++|++|++++|+++.++.++|.++.. . 
T Consensus        62 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~  139 (568)
T 2vsy_A           62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE-DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR-LC  139 (568)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hh
Confidence            34567778899999999999999999999999999999997 89999999999999999999999999999999999 9 


Q ss_pred             --CCHHHHHHHHHHHHHhCCCC
Q 023753          257 --KDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       257 --Gd~deAi~~yekALeldPdD  276 (277)
                        +++++|+++|+++++.+|++
T Consensus       140 ~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A          140 DWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             CCTTHHHHHHHHHHHHHHTCCC
T ss_pred             ccccHHHHHHHHHHHHhcCCcc
Confidence              99999999999999999985

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.27  E-value=4.4e-11  Score=109.00  Aligned_cols=95  Identities=14%  Similarity=0.105  Sum_probs=90.1

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ...+...+++++|+.+|+++++.+|+++.+++.+|.++. ..+++++|+.+|+++++++|+++.++..+|.++.. .|++
T Consensus        33 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~  110 (450)
T 2y4t_A           33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK-QGKL  110 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCH
Confidence            356677899999999999999999999999999999997 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+.+|+++++++|++
T Consensus       111 ~~A~~~~~~~~~~~~~~  127 (450)
T 2y4t_A          111 DEAEDDFKKVLKSNPSE  127 (450)
T ss_dssp             HHHHHHHHHHHTSCCCH
T ss_pred             HHHHHHHHHHHhcCCCC
Confidence            99999999999999974

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.27  E-value=2e-11  Score=103.73  Aligned_cols=93  Identities=10%  Similarity=0.106  Sum_probs=52.7

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHc
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD----GNILSLYADLIWQAH  256 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n----~~al~~LA~ll~~~~  256 (277)
                      ..+...+++++|+.+|+++++++|+++.+++.+|.++. ..+++++|+.+|++++. .|.+    +.++..+|.++.. .
T Consensus        11 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~-~   87 (272)
T 3u4t_A           11 DFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMK-K   87 (272)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHH-T
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHH-c
Confidence            34444556666666666666666666656666665554 55666666666666665 3322    2235555665555 5


Q ss_pred             CCHHHHHHHHHHHHHhCCCC
Q 023753          257 KDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       257 Gd~deAi~~yekALeldPdD  276 (277)
                      +++++|+.+|+++++++|++
T Consensus        88 ~~~~~A~~~~~~a~~~~~~~  107 (272)
T 3u4t_A           88 GQDSLAIQQYQAAVDRDTTR  107 (272)
T ss_dssp             TCHHHHHHHHHHHHHHSTTC
T ss_pred             ccHHHHHHHHHHHHhcCccc
Confidence            66666666666666665554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.26  E-value=4.1e-11  Score=103.55  Aligned_cols=94  Identities=11%  Similarity=0.047  Sum_probs=62.2

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~G-d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ..+...+++++|+.+|+++++.+|+++.+++.+|.++. ..+ ++++|+.+|+++++++|+++.++..+|.++.. .+++
T Consensus        64 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~  141 (330)
T 3hym_B           64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL-MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV-ESEH  141 (330)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH-HSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHH-HTCH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-ccCH
Confidence            44444566666666666666666666666666666665 556 66666666666666666666666666666666 6666


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+.+|++++++.|++
T Consensus       142 ~~A~~~~~~a~~~~~~~  158 (330)
T 3hym_B          142 DQAMAAYFTAAQLMKGC  158 (330)
T ss_dssp             HHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHhcccc
Confidence            66666666666666653

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.26  E-value=4.9e-11  Score=103.06  Aligned_cols=93  Identities=14%  Similarity=0.167  Sum_probs=46.5

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN---------PSDGNILSLYADL  251 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld---------P~n~~al~~LA~l  251 (277)
                      .++...+++++|+.+|+++++++|+++.++.++|.++. ..+++++|+.+|++++.+.         |.++.++..+|.+
T Consensus       167 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~  245 (330)
T 3hym_B          167 LEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAF-QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV  245 (330)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence            33344455555555555555555555555555555443 4455555555555555543         3444445555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          252 IWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       252 l~~~~Gd~deAi~~yekALeldPd  275 (277)
                      +.. .|++++|+.+|+++++++|+
T Consensus       246 ~~~-~g~~~~A~~~~~~a~~~~~~  268 (330)
T 3hym_B          246 CRK-LKKYAEALDYHRQALVLIPQ  268 (330)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHSTT
T ss_pred             HHH-hcCHHHHHHHHHHHHhhCcc
Confidence            544 55555555555555555444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.26  E-value=8.3e-12  Score=92.20  Aligned_cols=86  Identities=14%  Similarity=0.113  Sum_probs=76.8

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNAL-LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~-al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ..+...+++++|+.+|+++++++|+++. +++++|.++. ..+++++|+.+|++|++++|+++.++.+         +.+
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~---------~~~   77 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYR-KLGDWQKALNNYQSAIELNPDSPALQAR---------KMV   77 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTHHHHH---------HHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcHHHHHH---------HHH
Confidence            3455679999999999999999999999 9999999997 8999999999999999999999987743         347


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      .+|+.+|++++..+|++
T Consensus        78 ~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           78 MDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHhccCccc
Confidence            88999999999998876

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.25  E-value=9.8e-12  Score=124.61  Aligned_cols=93  Identities=9%  Similarity=-0.030  Sum_probs=86.0

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      .++...|++++|+..|+++++++|+++.+|+++|.++. ..|++++|+++|++|++++|+++.+++++|.++.. +|+++
T Consensus       441 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~-~g~~~  518 (681)
T 2pzi_A          441 RALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL-LTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL-AGNTD  518 (681)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH-HTCCC
T ss_pred             HHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCChH
Confidence            45566799999999999999999999999999999887 78999999999999999999999999999999998 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      + +.+|++|++++|++
T Consensus       519 ~-~~~~~~al~~~P~~  533 (681)
T 2pzi_A          519 E-HKFYQTVWSTNDGV  533 (681)
T ss_dssp             T-TCHHHHHHHHCTTC
T ss_pred             H-HHHHHHHHHhCCch
Confidence            9 99999999999986

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.24  E-value=9.5e-11  Score=92.06  Aligned_cols=92  Identities=14%  Similarity=-0.020  Sum_probs=82.3

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHHc
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL--IWQAH  256 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l--l~~~~  256 (277)
                      +..++...+++++|+.+|+++++++|+++.+++++|.++. ..+++++|+.+|+++++++|++..++..++.+  +.. .
T Consensus        53 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~-~  130 (166)
T 1a17_A           53 RSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK-Q  130 (166)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-H
Confidence            3456677899999999999999999999999999999987 89999999999999999999999988665555  777 8


Q ss_pred             CCHHHHHHHHHHHHHh
Q 023753          257 KDASRAESYFDQAVKS  272 (277)
Q Consensus       257 Gd~deAi~~yekALel  272 (277)
                      +++++|+.+++++..+
T Consensus       131 ~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          131 KAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccchHHH
Confidence            9999999999998765

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.24  E-value=4.9e-11  Score=102.78  Aligned_cols=93  Identities=17%  Similarity=0.030  Sum_probs=55.6

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH----
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEV--------RGDFAKAEELCGRAILANPSDGNIL----  245 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~--------~Gd~eeA~e~~ekALeldP~n~~al----  245 (277)
                      ..+...+++++|+.+|+++++++|++   +.+++.+|.++. .        .+++++|+.+|+++++.+|+++.+.    
T Consensus        60 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  138 (261)
T 3qky_A           60 RAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY-KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQ  138 (261)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH-HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH-HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHH
Confidence            44445566666666666666665543   445666666554 4        5666666666666666666654444    


Q ss_pred             -------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          246 -------------SLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       246 -------------~~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                                   +.+|.+++. .|++++|+.+|+++++..|+
T Consensus       139 ~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~  180 (261)
T 3qky_A          139 KIRELRAKLARKQYEAARLYER-RELYEAAAVTYEAVFDAYPD  180 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCC
Confidence                         555666666 66666666666666666665

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.22  E-value=1.3e-10  Score=106.96  Aligned_cols=93  Identities=16%  Similarity=0.110  Sum_probs=87.8

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ..+...|++++|+.+|+++++.+| ++.++.++|.++. ..|++++|+.+|+++++++|+++.++..+|.++.. .|+++
T Consensus        14 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~   90 (514)
T 2gw1_A           14 NQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYV-SVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG-LGKFA   90 (514)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHH-HHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH-HhhHH
Confidence            566678999999999999999999 6999999999997 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.+|++++.++|.+
T Consensus        91 ~A~~~~~~~~~~~~~~  106 (514)
T 2gw1_A           91 DAMFDLSVLSLNGDFN  106 (514)
T ss_dssp             HHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHhcCCCc
Confidence            9999999999999854

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.22  E-value=8.4e-11  Score=101.30  Aligned_cols=95  Identities=15%  Similarity=0.045  Sum_probs=85.8

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQ  254 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~  254 (277)
                      ..+...+++++|+.+|+++++.+|++   +.+++.+|.+++ ..+++++|+.+|+++++++|++   +.+++.+|.+++.
T Consensus        23 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~  101 (261)
T 3qky_A           23 MEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY-QNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYK  101 (261)
T ss_dssp             HHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHH
Confidence            45556799999999999999999999   899999999997 8999999999999999998854   6789999998864


Q ss_pred             H-------cCCHHHHHHHHHHHHHhCCCC
Q 023753          255 A-------HKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       255 ~-------~Gd~deAi~~yekALeldPdD  276 (277)
                      .       .+++++|+.+|+++++.+|++
T Consensus       102 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  130 (261)
T 3qky_A          102 LSPPYELDQTDTRKAIEAFQLFIDRYPNH  130 (261)
T ss_dssp             HCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred             hcccccccchhHHHHHHHHHHHHHHCcCc
Confidence            2       689999999999999999986

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.21  E-value=1.7e-10  Score=82.63  Aligned_cols=74  Identities=20%  Similarity=0.258  Sum_probs=63.5

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~  254 (277)
                      ...+...+++++|+.+|+++++++|+++.+++++|.++. ..+++++|+.+|+++++++|+++.++.++|.++..
T Consensus        16 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK   89 (91)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            355666788999999999999999999988999998886 78899999999999999999999988888888765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.21  E-value=7.2e-11  Score=109.75  Aligned_cols=94  Identities=18%  Similarity=0.166  Sum_probs=83.3

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      +..+...+++++|+.+|+++++++|+++.+++++|.++. ..|++++|+.+|+++++++|+++.++..+|.++.. .|++
T Consensus        32 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~  109 (537)
T 3fp2_A           32 GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYI-STGDLEKVIEFTTKALEIKPDHSKALLRRASANES-LGNF  109 (537)
T ss_dssp             HHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-cCCH
Confidence            356667899999999999999999999999999999997 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+.+|+ ++.++|+.
T Consensus       110 ~~A~~~~~-~~~~~~~~  125 (537)
T 3fp2_A          110 TDAMFDLS-VLSLNGDF  125 (537)
T ss_dssp             HHHHHHHH-HHC-----
T ss_pred             HHHHHHHH-HHhcCCCC
Confidence            99999995 88887764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.21  E-value=1.1e-10  Score=106.28  Aligned_cols=95  Identities=14%  Similarity=0.153  Sum_probs=88.5

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNAL----LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~----al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~  255 (277)
                      ..++...+++++|+.+|+++++++|+++.    ++.++|.++. ..|++++|+.+|+++++++|+++.++..+|.++.. 
T Consensus       264 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~-  341 (450)
T 2y4t_A          264 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFS-KDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI-  341 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-
Confidence            45666779999999999999999999954    7889999887 89999999999999999999999999999999999 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 023753          256 HKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       256 ~Gd~deAi~~yekALeldPdD  276 (277)
                      .|++++|+.+|+++++++|++
T Consensus       342 ~~~~~~A~~~~~~al~~~p~~  362 (450)
T 2y4t_A          342 EEMYDEAIQDYETAQEHNEND  362 (450)
T ss_dssp             TTCHHHHHHHHHHHHTTSSSC
T ss_pred             hcCHHHHHHHHHHHHHhCcch
Confidence            999999999999999999986

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.21  E-value=7.4e-11  Score=118.23  Aligned_cols=92  Identities=15%  Similarity=-0.052  Sum_probs=87.0

Q ss_pred             HhCCCcHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 023753          184 NNNHGSSSTDAYYEKMI--------EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (277)
Q Consensus       184 e~~Gd~deAi~~yekAL--------eldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~  255 (277)
                      ...+++++|++.|++++        +.+|+++.+++++|.++. ..|++++|+++|++|++++|+++.+++++|.++.. 
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALL-DLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL-  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHH-hcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-
Confidence            55689999999999999        999999999999999997 79999999999999999999999999999999999 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCC
Q 023753          256 HKDASRAESYFDQAVKSAPDDW  277 (277)
Q Consensus       256 ~Gd~deAi~~yekALeldPdD~  277 (277)
                      .|++++|+.+|++|++++|++.
T Consensus       480 ~g~~~~A~~~~~~al~l~P~~~  501 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPGEL  501 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCS
T ss_pred             cCCHHHHHHHHHHHHHhCCCCh
Confidence            9999999999999999999873

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.20  E-value=3.8e-11  Score=98.39  Aligned_cols=90  Identities=11%  Similarity=-0.037  Sum_probs=55.9

Q ss_pred             HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH----------------------------------HHH
Q 023753          184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAK----------------------------------AEE  229 (277)
Q Consensus       184 e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~ee----------------------------------A~e  229 (277)
                      ...|++++|+..|+++++++|+++.+++++|.++. ..|++++                                  |+.
T Consensus        17 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~   95 (176)
T 2r5s_A           17 LQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLL-ETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELK   95 (176)
T ss_dssp             HHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH-HTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHH
Confidence            33455555555555555555555555555555443 3444433                                  344


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          230 LCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       230 ~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                      +|+++++++|+++.+++.+|.++.. .|++++|+.+|+++++++|+
T Consensus        96 ~~~~al~~~P~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~  140 (176)
T 2r5s_A           96 RLEQELAANPDNFELACELAVQYNQ-VGRDEEALELLWNILKVNLG  140 (176)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCcc
Confidence            5555666677777777777777777 77777777777777777775

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.20  E-value=2.3e-11  Score=96.03  Aligned_cols=70  Identities=19%  Similarity=0.235  Sum_probs=65.4

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       205 ~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +.+.++.++|..++ ..|+|++|+.+|++||+++|+++.++.++|.+|+. ++++++|+.+|++||+++|++
T Consensus         6 d~A~a~~~lG~~~~-~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A            6 DAAIAEKDLGNAAY-KQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCccc
Confidence            34677889999998 89999999999999999999999999999999999 999999999999999998864

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.18  E-value=1.9e-10  Score=106.90  Aligned_cols=94  Identities=16%  Similarity=0.211  Sum_probs=74.1

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      .++...+++++|+.+|+++++++|+++.++..+|.++. ..+++++|+.+|+++++++|+++.++..+|.++.. .|+++
T Consensus       284 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~  361 (537)
T 3fp2_A          284 LTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF-ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK-QGKFT  361 (537)
T ss_dssp             HHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence            44445677888888888888888888888888887776 67888888888888888888888888888888877 78888


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.+|+++++++|++
T Consensus       362 ~A~~~~~~~~~~~~~~  377 (537)
T 3fp2_A          362 ESEAFFNETKLKFPTL  377 (537)
T ss_dssp             HHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            8888888888887765

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.18  E-value=1e-10  Score=104.20  Aligned_cols=85  Identities=19%  Similarity=0.270  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 023753          190 SSTDAYYEKMIE-ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN-ILSLYADLIWQAHKDASRAESYFD  267 (277)
Q Consensus       190 deAi~~yekALe-ldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~-al~~LA~ll~~~~Gd~deAi~~ye  267 (277)
                      ++|+..|++|++ ++|++..+|.++|.++. ..+++++|+.+|++|++++|.++. +|..++.++.. .+++++|+.+|+
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~~A~~~~~  158 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-AEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH-HHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence            889999999999 79999999999998886 789999999999999999998886 89999988888 889999999999


Q ss_pred             HHHHhCCCC
Q 023753          268 QAVKSAPDD  276 (277)
Q Consensus       268 kALeldPdD  276 (277)
                      +|++.+|.+
T Consensus       159 ~a~~~~p~~  167 (308)
T 2ond_A          159 KAREDARTR  167 (308)
T ss_dssp             HHHTSTTCC
T ss_pred             HHHhcCCCC
Confidence            999888865

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.18  E-value=2.6e-10  Score=102.38  Aligned_cols=96  Identities=10%  Similarity=-0.052  Sum_probs=84.3

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYA--RFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA--~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~  256 (277)
                      ...++...|++++|+..|+++++++|++..+....+  .++. ..+++++|+.+|+++++.+|+++.+++++|.++.. .
T Consensus       136 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~-~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~-~  213 (291)
T 3mkr_A          136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAA-GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA-Q  213 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-c
Confidence            346777889999999999999999999875544433  3332 35899999999999999999999999999999999 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCC
Q 023753          257 KDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       257 Gd~deAi~~yekALeldPdD  276 (277)
                      |++++|+.+|++|++++|++
T Consensus       214 g~~~eA~~~l~~al~~~p~~  233 (291)
T 3mkr_A          214 GRWEAAEGVLQEALDKDSGH  233 (291)
T ss_dssp             TCHHHHHHHHHHHHHHCTTC
T ss_pred             CCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999987

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.17  E-value=1.8e-10  Score=105.50  Aligned_cols=91  Identities=11%  Similarity=0.025  Sum_probs=82.7

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ...+...+++++|+.+|++||+++|+++.+++++|.+|. ..+++++|+.+|++|++++|+++.++..++.++.. .+++
T Consensus       203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~-~~~~  280 (336)
T 1p5q_A          203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL-AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR-IRRQ  280 (336)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHH
Confidence            355666789999999999999999999999999999997 89999999999999999999999999999999998 9999


Q ss_pred             HHH-HHHHHHHHHh
Q 023753          260 SRA-ESYFDQAVKS  272 (277)
Q Consensus       260 deA-i~~yekALel  272 (277)
                      ++| ...|++++..
T Consensus       281 ~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          281 LAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            998 5677777654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.17  E-value=2.7e-10  Score=107.82  Aligned_cols=96  Identities=13%  Similarity=0.123  Sum_probs=89.2

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEA------NPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALel------dP~n-~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l  251 (277)
                      ...++...|++++|+.+|++++++      +|++ ..+|..++.++. ..|++++|+++|+++++++|+++.++..++.+
T Consensus       481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  559 (597)
T 2xpi_A          481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR-KLKMYDAAIDALNQGLLLSTNDANVHTAIALV  559 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            446667789999999999999999      7765 789999999997 89999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          252 IWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       252 l~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      |.. .|++++|+.+|+++++++|++
T Consensus       560 ~~~-~g~~~~A~~~~~~~l~~~p~~  583 (597)
T 2xpi_A          560 YLH-KKIPGLAITHLHESLAISPNE  583 (597)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHH-hCCHHHHHHHHHHHHhcCCCC
Confidence            999 999999999999999999986

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.17  E-value=1.8e-10  Score=82.50  Aligned_cols=70  Identities=19%  Similarity=0.316  Sum_probs=66.3

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       205 ~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      .++.+++++|.++. ..+++++|+.+|++|++++|+++.++..+|.++.. .+++++|+.+|+++++++|++
T Consensus         7 ~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~   76 (91)
T 1na3_A            7 NSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNN   76 (91)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             ccHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCC
Confidence            46788999999887 89999999999999999999999999999999999 999999999999999999986

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.16  E-value=1.5e-10  Score=98.69  Aligned_cols=95  Identities=16%  Similarity=0.096  Sum_probs=84.3

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---ILSLYADLIWQ  254 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~---~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~---al~~LA~ll~~  254 (277)
                      ..+...|++++|+..|+++++.+|+++   .+++++|.+++ ..+++++|+.+|+++++.+|+++.   +++.+|.++..
T Consensus        12 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~   90 (225)
T 2yhc_A           12 QQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMA   90 (225)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHh
Confidence            445567999999999999999999874   78999999997 899999999999999999999864   78889988875


Q ss_pred             H-----------------cCCHHHHHHHHHHHHHhCCCC
Q 023753          255 A-----------------HKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       255 ~-----------------~Gd~deAi~~yekALeldPdD  276 (277)
                      .                 .+++++|+..|+++++.+|++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~  129 (225)
T 2yhc_A           91 LDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS  129 (225)
T ss_dssp             HHC--------------CCHHHHHHHHHHHHHHTTCTTC
T ss_pred             hhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC
Confidence            1                 468999999999999999986

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.16  E-value=6.6e-11  Score=105.14  Aligned_cols=96  Identities=14%  Similarity=0.102  Sum_probs=82.4

Q ss_pred             HHHHHHhC-CCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------H
Q 023753          179 NNNYSNNN-HGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN-------I  244 (277)
Q Consensus       179 Y~~m~e~~-Gd~deAi~~yekALeldP~n------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~-------a  244 (277)
                      .+.++... +++++|+.+|++|+++.|.+      ..++.++|.++. ..|++++|+.+|+++++++|++..       +
T Consensus       123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  201 (292)
T 1qqe_A          123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA-LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY  201 (292)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            34677776 99999999999999998865      567899999997 899999999999999999998754       5


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       245 l~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +.++|.++.. +|++++|+.+|+++++++|+.
T Consensus       202 ~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~  232 (292)
T 1qqe_A          202 FLKKGLCQLA-ATDAVAAARTLQEGQSEDPNF  232 (292)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHGGGCC----
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Confidence            7889999999 999999999999999999974

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.16  E-value=1.1e-10  Score=103.72  Aligned_cols=95  Identities=18%  Similarity=0.078  Sum_probs=83.0

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVR-GDFAKAEELCGRAILANPSD------GNILS  246 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n------~~al~nLA~lL~e~~-Gd~eeA~e~~ekALeldP~n------~~al~  246 (277)
                      +.++...|++++|+.+|++|+++.|..      +.++.++|.+|. .. +++++|+.+|++|+++.|.+      ..++.
T Consensus        84 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~  162 (292)
T 1qqe_A           84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE-NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI  162 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence            356667799999999999999998754      468899999886 75 99999999999999998865      56788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          247 LYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       247 ~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ++|.++.. +|++++|+.+|++++++.|++
T Consensus       163 ~lg~~~~~-~g~~~~A~~~~~~al~~~~~~  191 (292)
T 1qqe_A          163 KCADLKAL-DGQYIEASDIYSKLIKSSMGN  191 (292)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHH-hCCHHHHHHHHHHHHHHHhcC
Confidence            99999999 999999999999999998875

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.16  E-value=1.7e-10  Score=85.34  Aligned_cols=69  Identities=14%  Similarity=0.042  Sum_probs=65.5

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       206 n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ++.+++++|.++. ..+++++|+.+|++|++++|+++.+++++|.+++. .|++++|+.+|+++++++|++
T Consensus         3 ~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLF-KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCc
Confidence            4678899999987 89999999999999999999999999999999999 999999999999999999986

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.14  E-value=2.1e-10  Score=88.07  Aligned_cols=71  Identities=15%  Similarity=0.054  Sum_probs=67.0

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          204 PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       204 P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      |..+..+.++|..++ ..+++++|+.+|++|++++|+++.++.++|.+++. .+++++|+.+|+++++++|++
T Consensus         1 p~~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~   71 (126)
T 3upv_A            1 SMKAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNF   71 (126)
T ss_dssp             CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             CchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCc
Confidence            456788999999887 89999999999999999999999999999999999 999999999999999999986

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.13  E-value=2.1e-10  Score=102.30  Aligned_cols=98  Identities=13%  Similarity=0.174  Sum_probs=63.5

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNAL-LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~-al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~  256 (277)
                      .|..++...+++++|+..|+++++++|.++. +|.+++.++. ..+++++|+.+|++|++.+|.+..++..++.+.+...
T Consensus       104 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~  182 (308)
T 2ond_A          104 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS  182 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTS
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence            4556667778888888888888888888876 7888887765 5566666666666666665555555544444433213


Q ss_pred             CCHHHHHHHHHHHHHhCCCC
Q 023753          257 KDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       257 Gd~deAi~~yekALeldPdD  276 (277)
                      |++++|+.+|++|++++|++
T Consensus       183 ~~~~~A~~~~~~al~~~p~~  202 (308)
T 2ond_A          183 KDKSVAFKIFELGLKKYGDI  202 (308)
T ss_dssp             CCHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhCCCc
Confidence            55555666666555555543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.13  E-value=2.4e-10  Score=97.43  Aligned_cols=96  Identities=10%  Similarity=0.008  Sum_probs=84.1

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH-----------------cCCHHHHHHHHHHHHHhCC
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNAL---LLGNYARFLKEV-----------------RGDFAKAEELCGRAILANP  239 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~---al~nLA~lL~e~-----------------~Gd~eeA~e~~ekALeldP  239 (277)
                      ...+...+++++|+..|+++++.+|+++.   +++.+|.++...                 .+++++|+.+|+++++.+|
T Consensus        48 g~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P  127 (225)
T 2yhc_A           48 IYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP  127 (225)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc
Confidence            46677789999999999999999999864   788899887621                 4689999999999999999


Q ss_pred             CCHHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          240 SDGNIL-----------------SLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       240 ~n~~al-----------------~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +++.+.                 ..+|.+++. .|++++|+..|+++++..|++
T Consensus       128 ~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~  180 (225)
T 2yhc_A          128 NSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE-RGAWVAVVNRVEGMLRDYPDT  180 (225)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTS
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHCcCC
Confidence            987654                 567888998 999999999999999999985

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.13  E-value=1.6e-10  Score=84.41  Aligned_cols=72  Identities=11%  Similarity=0.147  Sum_probs=68.9

Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          202 ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       202 ldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                      ++|+++.+++.+|.++. ..+++++|+.+|+++++++|.++.++..+|.++.. .+++++|+.+|+++++++|+
T Consensus         1 l~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQY-DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-LERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             CCCSSTTGGGGHHHHHH-SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSCC
T ss_pred             CCCCcHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCcc
Confidence            47999999999999987 89999999999999999999999999999999999 99999999999999999997

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.12  E-value=6.4e-11  Score=108.72  Aligned_cols=95  Identities=12%  Similarity=0.020  Sum_probs=51.0

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ..+...+++++|+.+|++||+++|+++.+|+++|.+|. ..+++++|+.+|++|++++|+++.++..++.+.....++.+
T Consensus       238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~-~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA-ELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHTTC------------------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34445789999999999999999999999999999997 89999999999999999999999999999998555477889


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|..+|.+++..+|++
T Consensus       317 ~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          317 KQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             ----------------
T ss_pred             HHHHHHHHhhCCCCCC
Confidence            9999999999999976

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.12  E-value=6e-10  Score=85.65  Aligned_cols=74  Identities=19%  Similarity=0.116  Sum_probs=68.7

Q ss_pred             HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          201 EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       201 eldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ..+|.++.+++.+|.++. ..+++++|+.+|++++.++|+++.+++.+|.++.. .+++++|+.+|+++++++|++
T Consensus         3 ~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~   76 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQS   76 (137)
T ss_dssp             ---CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCccccHHHHHHHHHHHH-HhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCchh
Confidence            467889999999999997 89999999999999999999999999999999999 999999999999999999986

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.11  E-value=6.7e-10  Score=105.11  Aligned_cols=94  Identities=14%  Similarity=0.050  Sum_probs=60.4

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      .++...|++++|+.+|+++++++|.+..+|+.++.++. ..|++++|+++|+++++.+|+++.++..++.++.. .|+++
T Consensus       381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~  458 (597)
T 2xpi_A          381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA-IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ-LGNIL  458 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH-HTCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cCCHH
Confidence            44555566666666666666666666666666666664 56666666666666666666666666666666666 66666


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+++|+++++++|++
T Consensus       459 ~A~~~~~~~~~~~~~~  474 (597)
T 2xpi_A          459 LANEYLQSSYALFQYD  474 (597)
T ss_dssp             HHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            6666666666666654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.10  E-value=1.7e-10  Score=96.88  Aligned_cols=94  Identities=16%  Similarity=0.186  Sum_probs=85.5

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------NPSD  241 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALel--------dP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel--------dP~n  241 (277)
                      .+..++...+++++|+.+|++++++        +|....++.++|.++. ..+++++|+.+|++++++        .|..
T Consensus        90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  168 (283)
T 3edt_B           90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYRRALEIYATRLGPDDPNV  168 (283)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence            3456777789999999999999998        5777889999999997 899999999999999999        7778


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753          242 GNILSLYADLIWQAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       242 ~~al~~LA~ll~~~~Gd~deAi~~yekALeld  273 (277)
                      ..++..+|.++.. .|++++|+.+|++++++.
T Consensus       169 ~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~  199 (283)
T 3edt_B          169 AKTKNNLASCYLK-QGKYQDAETLYKEILTRA  199 (283)
T ss_dssp             HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Confidence            8899999999999 999999999999999874

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.10  E-value=2.5e-10  Score=104.94  Aligned_cols=97  Identities=18%  Similarity=0.118  Sum_probs=85.2

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNAL------LLGNYARFLKEV---RGDFAKAEELCGRAILANPSDGNILSLY  248 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~------al~nLA~lL~e~---~Gd~eeA~e~~ekALeldP~n~~al~~L  248 (277)
                      .+..++...+++++|+.+|+++++++|+++.      ++.++|.++. .   .+++++|+.+|++++.++|+++.++..+
T Consensus       377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  455 (514)
T 2gw1_A          377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT-RNPTVENFIEATNLLEKASKLDPRSEQAKIGL  455 (514)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH-TSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh-hhhhcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            3446667778999999999999999888855      8889998886 7   8999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          249 ADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       249 A~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      |.++.. .|++++|+.+|+++++++|++
T Consensus       456 a~~~~~-~g~~~~A~~~~~~a~~~~~~~  482 (514)
T 2gw1_A          456 AQMKLQ-QEDIDEAITLFEESADLARTM  482 (514)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHCSSH
T ss_pred             HHHHHH-hcCHHHHHHHHHHHHHhcccc
Confidence            999998 999999999999999999874

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.09  E-value=9.7e-10  Score=101.18  Aligned_cols=97  Identities=12%  Similarity=0.093  Sum_probs=81.6

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEA---------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--------PSD  241 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALel---------dP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld--------P~n  241 (277)
                      .+.++...|++++|+.+|++|+++         +|....++.|+|.+|. ..|++++|+.+|++|+++.        +..
T Consensus        57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~-~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~  135 (472)
T 4g1t_A           57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY-HMGRLSDVQIYVDKVKHVCEKFSSPYRIES  135 (472)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhHhcccccchhh
Confidence            346667789999999999999987         7788889999999997 7999999999999999873        456


Q ss_pred             HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Q 023753          242 GNILSLYADLIWQA-HKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       242 ~~al~~LA~ll~~~-~Gd~deAi~~yekALeldPdD  276 (277)
                      +.++..+|.++... .++|++|+.+|++|++++|++
T Consensus       136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~  171 (472)
T 4g1t_A          136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN  171 (472)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC
Confidence            78888888777652 347899999999999999986

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.09  E-value=4.8e-10  Score=90.33  Aligned_cols=72  Identities=18%  Similarity=0.111  Sum_probs=68.1

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          203 NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       203 dP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ++.++.+++.+|.+++ ..+++++|+.+|++|++++|+++.+++++|.+++. .+++++|+.+|++|++++|++
T Consensus         7 ~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~   78 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAM-ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHEKAAEDAELATVVDPKY   78 (164)
T ss_dssp             CCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             hhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCC
Confidence            4567889999999997 89999999999999999999999999999999999 999999999999999999986

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.08  E-value=4.5e-10  Score=91.94  Aligned_cols=83  Identities=20%  Similarity=0.176  Sum_probs=76.3

Q ss_pred             CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHH
Q 023753          188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD--GNILSLYADLIWQAHKDASRAESY  265 (277)
Q Consensus       188 d~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n--~~al~~LA~ll~~~~Gd~deAi~~  265 (277)
                      +..+|+.+|+++++++|+++.+++++|.++. ..|++++|+.+|+++++++|+.  +.++..++.++.. .|+.++|+.+
T Consensus        89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~-~g~~~~A~~~  166 (176)
T 2r5s_A           89 AESPELKRLEQELAANPDNFELACELAVQYN-QVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA-LGQGNAIASK  166 (176)
T ss_dssp             TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH-HCSSCHHHHH
T ss_pred             ccchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH-hCCCCcHHHH
Confidence            3456899999999999999999999999997 8999999999999999999975  6699999999998 9999999999


Q ss_pred             HHHHHHh
Q 023753          266 FDQAVKS  272 (277)
Q Consensus       266 yekALel  272 (277)
                      |+++|..
T Consensus       167 y~~al~~  173 (176)
T 2r5s_A          167 YRRQLYS  173 (176)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999863

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.08  E-value=3.2e-10  Score=97.11  Aligned_cols=96  Identities=21%  Similarity=0.264  Sum_probs=85.3

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA-------------  237 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALel--------dP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel-------------  237 (277)
                      +..++...+++++|+.+|++++++        +|....++.++|.++. ..|++++|+.+|++++++             
T Consensus       159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  237 (311)
T 3nf1_A          159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL-KQGKFKQAETLYKEILTRAHEREFGSVDDEN  237 (311)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence            446677789999999999999999        7777889999999997 899999999999999984             


Q ss_pred             ------------------------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          238 ------------------------------------NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       238 ------------------------------------dP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                                                          +|.++.++..+|.++.. .|++++|+.+|++|+++.|..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~l~~~~  311 (311)
T 3nf1_A          238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRR-QGKFEAAETLEEAAMRSRKQG  311 (311)
T ss_dssp             CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHhhcC
Confidence                                                46778889999999999 999999999999999998863

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.07  E-value=8.8e-10  Score=84.67  Aligned_cols=72  Identities=19%  Similarity=0.070  Sum_probs=65.8

Q ss_pred             CCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          203 NPGNALLLGNYARFLKEVRGD---FAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       203 dP~n~~al~nLA~lL~e~~Gd---~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +|+|+.++..+|.+++ ..++   .++|..++++|++++|+++.+++.+|.++++ .|+|++|+.+|+++++.+|.+
T Consensus         2 ~p~~~~~~~~~a~al~-~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLY-YLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHH-HTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Confidence            7899999999999886 3444   6999999999999999999999999999999 999999999999999999874

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.06  E-value=1e-10  Score=112.75  Aligned_cols=96  Identities=14%  Similarity=-0.005  Sum_probs=82.9

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHHc
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL--IWQAH  256 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l--l~~~~  256 (277)
                      ....+...+++++|+.+|++|++++|+++.+++++|.+|. ..+++++|+++|++|++++|+++.++..++.+  +.. +
T Consensus        46 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~  123 (477)
T 1wao_1           46 RSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK-Q  123 (477)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-H
Confidence            3466677899999999999999999999999999999997 89999999999999999999999999999988  777 8


Q ss_pred             CCHHHHHHHHH-----------HHHHhCCCC
Q 023753          257 KDASRAESYFD-----------QAVKSAPDD  276 (277)
Q Consensus       257 Gd~deAi~~ye-----------kALeldPdD  276 (277)
                      +++++|+++++           ++++++|+.
T Consensus       124 g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          124 KAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHhccccccchhHhhhhhhhccccccc
Confidence            99999999999           888877764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.06  E-value=4.1e-10  Score=94.57  Aligned_cols=92  Identities=23%  Similarity=0.304  Sum_probs=83.0

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------NPSDG  242 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALel--------dP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel--------dP~n~  242 (277)
                      ...++...+++++|+.+|++++++        +|..+.++.++|.++. ..+++++|+.+|++|+.+        +|...
T Consensus        49 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  127 (283)
T 3edt_B           49 LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKFHPDVA  127 (283)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            446666789999999999999988        4666789999999997 899999999999999998        57778


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          243 NILSLYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       243 ~al~~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                      .++.++|.+++. .|++++|+.+|++++++
T Consensus       128 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B          128 KQLNNLALLCQN-QGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HHHHHHHHHHHT-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence            899999999999 99999999999999988

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.04  E-value=1.5e-09  Score=80.85  Aligned_cols=79  Identities=13%  Similarity=0.067  Sum_probs=72.7

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      +..++...+++++|+.+|+++++++|+++.+++.+|.++. ..+++++|+.+|+++++++|+++.++..++.++.. .++
T Consensus        52 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~  129 (131)
T 2vyi_A           52 RAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS-SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK-LRE  129 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HTT
T ss_pred             HHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-Hhc
Confidence            3466667899999999999999999999999999999987 89999999999999999999999999999999988 776


Q ss_pred             H
Q 023753          259 A  259 (277)
Q Consensus       259 ~  259 (277)
                      +
T Consensus       130 ~  130 (131)
T 2vyi_A          130 A  130 (131)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.03  E-value=9.6e-10  Score=91.21  Aligned_cols=91  Identities=18%  Similarity=0.105  Sum_probs=75.4

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      ...++...+++++|+.+|+++++++|+++.+++++|.++. ..+++++|+.+|++|++++|+++.++..++.++.. .++
T Consensus        94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~  171 (198)
T 2fbn_A           94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM-YFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK-LKE  171 (198)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HHH
Confidence            3466677899999999999999999999999999999997 89999999999999999999999999999999988 888


Q ss_pred             HHHHH-HHHHHHHH
Q 023753          259 ASRAE-SYFDQAVK  271 (277)
Q Consensus       259 ~deAi-~~yekALe  271 (277)
                      ++++. ..|.+.+.
T Consensus       172 ~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          172 ARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHC-----------
T ss_pred             HHHHHHHHHHHHhc
Confidence            88777 44554443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.02  E-value=1.8e-09  Score=81.40  Aligned_cols=78  Identities=14%  Similarity=0.042  Sum_probs=71.1

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      +..++...+++++|+.+|+++++++|+++.+++++|.++. ..+++++|+.+|+++++++|.+..++..++.++.. +++
T Consensus        56 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~  133 (133)
T 2lni_A           56 RAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE-AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA-QYN  133 (133)
T ss_dssp             HHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH-HTC
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hcC
Confidence            3456667799999999999999999999999999999987 89999999999999999999999999999999987 553

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.00  E-value=1.6e-09  Score=96.54  Aligned_cols=85  Identities=14%  Similarity=0.160  Sum_probs=77.7

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHH
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD--GNILSLYADLIWQAHKDASRAE  263 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n--~~al~~LA~ll~~~~Gd~deAi  263 (277)
                      .++.++|+..|+++++++|+++.+++++|.+|. ..|++++|+.+|+++++++|++  +.++.+++.++.. .|+.++|+
T Consensus       198 ~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~-~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~-~g~~~~a~  275 (287)
T 3qou_A          198 QAADTPEIQQLQQQVAENPEDAALATQLALQLH-QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA-LGTGDALA  275 (287)
T ss_dssp             HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH-HCTTCHHH
T ss_pred             hcccCccHHHHHHHHhcCCccHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH-cCCCCcHH
Confidence            345556788888999999999999999999997 8999999999999999999998  8999999999988 99999999


Q ss_pred             HHHHHHHHh
Q 023753          264 SYFDQAVKS  272 (277)
Q Consensus       264 ~~yekALel  272 (277)
                      ..|++++..
T Consensus       276 ~~~r~al~~  284 (287)
T 3qou_A          276 SXYRRQLYA  284 (287)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999864

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.00  E-value=1.3e-09  Score=83.50  Aligned_cols=93  Identities=13%  Similarity=0.021  Sum_probs=71.3

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNILS  246 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~------~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n------~~al~  246 (277)
                      ...++...+++++|+.+|++++++.+...      .++.++|.++. ..+++++|+.+|++|+.+.+..      ..++.
T Consensus        15 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   93 (164)
T 3ro3_A           15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCY   93 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence            34556667888888888888888765422      47778888776 7888888888888888876543      55777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753          247 LYADLIWQAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       247 ~LA~ll~~~~Gd~deAi~~yekALeld  273 (277)
                      ++|.++.. .+++++|+.+|++++++.
T Consensus        94 ~l~~~~~~-~~~~~~A~~~~~~a~~~~  119 (164)
T 3ro3_A           94 SLGNTYTL-LQDYEKAIDYHLKHLAIA  119 (164)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HhhHHHHHHHHHHHHHHH
Confidence            88888888 888888888888888763

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.99  E-value=1.4e-09  Score=100.04  Aligned_cols=94  Identities=18%  Similarity=0.116  Sum_probs=53.2

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV------------------RGDFAKAEELCGRAILANPSDG  242 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~------------------~Gd~eeA~e~~ekALeldP~n~  242 (277)
                      .++...+++++|+.+|++|++++|+++.+++++|.++...                  ...+++|+.+|++|++++|.++
T Consensus       255 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  334 (472)
T 4g1t_A          255 KFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLF  334 (472)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred             HHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchh
Confidence            4444556666666666666666666666666665544210                  1123445555555555555555


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       243 ~al~~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                      .++..+|.++.. .+++++|+.+|++|++++|+
T Consensus       335 ~~~~~lg~~~~~-~~~~~~A~~~~~kaL~~~~~  366 (472)
T 4g1t_A          335 RVCSILASLHAL-ADQYEEAEYYFQKEFSKELT  366 (472)
T ss_dssp             CCHHHHHHHHHH-TTCHHHHHHHHHHHHHSCCC
T ss_pred             hhhhhHHHHHHH-hccHHHHHHHHHHHHhcCCC
Confidence            555555555555 66666677667666666654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.99  E-value=6e-09  Score=91.89  Aligned_cols=92  Identities=10%  Similarity=0.052  Sum_probs=79.4

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAI---LANPSDG----NILSL  247 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n------~~al~nLA~lL~e~~Gd~eeA~e~~ekAL---eldP~n~----~al~~  247 (277)
                      .++...+++++|+.+|++|+++.+..      ..+++++|.+|. ..+++++|+.+|++|+   +..|++.    .++++
T Consensus       123 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~n  201 (293)
T 2qfc_A          123 AYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN  201 (293)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHh
Confidence            44556689999999999999876554      568999999997 8999999999999999   5567653    68999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753          248 YADLIWQAHKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       248 LA~ll~~~~Gd~deAi~~yekALeldP  274 (277)
                      +|.+|.. ++++++|+.+|++|+++.+
T Consensus       202 lg~~y~~-~~~y~~Al~~~~kal~~~~  227 (293)
T 2qfc_A          202 HAKALYL-DSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HhhHHHHHHHHHHHHHHHH
Confidence            9999999 9999999999999998753

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.98  E-value=2.9e-09  Score=83.36  Aligned_cols=66  Identities=11%  Similarity=-0.045  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       209 al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      .++.+|..+. ..|++++|+.+|++|++++|+++.+++.+|.++.. .|++++|+.+|++|++++|++
T Consensus        19 ~~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~   84 (121)
T 1hxi_A           19 NPMEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKD   84 (121)
T ss_dssp             CHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Confidence            3678888886 79999999999999999999999999999999999 999999999999999999986

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.98  E-value=3.3e-09  Score=78.00  Aligned_cols=64  Identities=17%  Similarity=0.202  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          211 GNYARFLKEVRGDFAKAEELCGRAILANPSDGN-ILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       211 ~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~-al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ++.|..+. ..+++++|+.+|+++++++|+++. +++.+|.++.. .+++++|+.+|+++++++|++
T Consensus         4 ~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~   68 (99)
T 2kc7_A            4 LKTIKELI-NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LGDWQKALNNYQSAIELNPDS   68 (99)
T ss_dssp             HHHHHHHH-HHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCc
Confidence            56787776 789999999999999999999999 99999999999 999999999999999999986

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.97  E-value=2.4e-09  Score=82.02  Aligned_cols=95  Identities=11%  Similarity=0.046  Sum_probs=80.8

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS------DGNILS  246 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~------n~~al~  246 (277)
                      ...++...+++++|+.+|++++++.+..      ..++.++|.++. ..+++++|+.+|++++.+.+.      .+.++.
T Consensus        55 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  133 (164)
T 3ro3_A           55 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACW  133 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHH
Confidence            4466677899999999999999986653      568899999887 899999999999999987432      256788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          247 LYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       247 ~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                      .+|.+++. .|++++|+.+|++++++...
T Consensus       134 ~la~~~~~-~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          134 SLGNAYTA-LGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHH-HTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHH-ccCHHHHHHHHHHHHHHHHH
Confidence            99999999 99999999999999987543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.97  E-value=2.2e-09  Score=82.24  Aligned_cols=75  Identities=17%  Similarity=0.147  Sum_probs=65.4

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~  254 (277)
                      ...++...+++++|+.+|+++++++|+++.+++++|.++. ..|++++|+.+|++++..+|+++.+......+...
T Consensus        33 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~  107 (117)
T 3k9i_A           33 LGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY-NLGRYEQGVELLLKIIAETSDDETIQSYKQAILFY  107 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            3456777899999999999999999999999999999997 89999999999999999999999876554444433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.97  E-value=1.6e-09  Score=96.86  Aligned_cols=93  Identities=14%  Similarity=0.066  Sum_probs=78.7

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNILSL  247 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n------~~al~~  247 (277)
                      ..++.. +++++|+.+|++|+++.|..      ..++.++|.++. ..|++++|+.+|++|+.+.|.+      ..++..
T Consensus       123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  200 (307)
T 2ifu_A          123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV-RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA  200 (307)
T ss_dssp             HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence            355666 99999999999999988754      578889999887 7999999999999999987654      346778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          248 YADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       248 LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ++.+++. +|++++|+.+|++++ ++|+.
T Consensus       201 ~g~~~~~-~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          201 QVLVQLH-RADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHT-TSTTS
T ss_pred             HHHHHHH-cCCHHHHHHHHHHHh-CCCCC
Confidence            8888888 899999999999999 98864

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.96  E-value=2.6e-09  Score=91.19  Aligned_cols=92  Identities=8%  Similarity=0.059  Sum_probs=82.6

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNA----LLLGNYARFLKEVRGDFAKAEELCGRAILA------NPSDGNILSLYAD  250 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~----~al~nLA~lL~e~~Gd~eeA~e~~ekALel------dP~n~~al~~LA~  250 (277)
                      ..+...+++++|+.+|+++++++|+++    .++..+|.++. ..+++++|+.+|++|+.+      .|..+.++..+|.
T Consensus        13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~   91 (338)
T 3ro2_A           13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN   91 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence            556678999999999999999999994    67889999887 899999999999999988      5566788999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC
Q 023753          251 LIWQAHKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       251 ll~~~~Gd~deAi~~yekALeldP  274 (277)
                      ++.. .|++++|+.+|++++++.|
T Consensus        92 ~~~~-~g~~~~A~~~~~~al~~~~  114 (338)
T 3ro2_A           92 TLKV-LGNFDEAIVCCQRHLDISR  114 (338)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHH-ccCHHHHHHHHHHHHHHHH
Confidence            9999 9999999999999998754

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.94  E-value=4e-09  Score=95.04  Aligned_cols=91  Identities=11%  Similarity=0.099  Sum_probs=83.4

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNA----LLLGNYARFLKEVRGDFAKAEELCGRAILA------NPSDGNILSLYAD  250 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~----~al~nLA~lL~e~~Gd~eeA~e~~ekALel------dP~n~~al~~LA~  250 (277)
                      ..+...+++++|+.+|+++++++|+++    .+++.+|.++. ..|++++|+.+|++|+++      +|....++..+|.
T Consensus        56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~  134 (411)
T 4a1s_A           56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN  134 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence            555677999999999999999999997    58899999987 799999999999999998      6778889999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Q 023753          251 LIWQAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       251 ll~~~~Gd~deAi~~yekALeld  273 (277)
                      ++.. .|++++|+.+|++++++.
T Consensus       135 ~~~~-~g~~~~A~~~~~~al~~~  156 (411)
T 4a1s_A          135 TLKV-MGRFDEAAICCERHLTLA  156 (411)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHH-CCCHHHHHHHHHHHHHHH
Confidence            9999 999999999999999873

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.94  E-value=1.4e-09  Score=93.10  Aligned_cols=95  Identities=16%  Similarity=0.208  Sum_probs=84.4

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEAN--------PGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------NPSD  241 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeld--------P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel--------dP~n  241 (277)
                      ....++...+++++|+.+|++++++.        |....++.++|.++. ..+++++|+.+|++++.+        +|..
T Consensus       116 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  194 (311)
T 3nf1_A          116 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ-NQGKYEEVEYYYQRALEIYQTKLGPDDPNV  194 (311)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTSCTTCHHH
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence            34466777899999999999999984        566788999999987 899999999999999999        7778


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753          242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       242 ~~al~~LA~ll~~~~Gd~deAi~~yekALeldP  274 (277)
                      ..++..+|.++.. .|++++|+.+|++++++.|
T Consensus       195 ~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~  226 (311)
T 3nf1_A          195 AKTKNNLASCYLK-QGKFKQAETLYKEILTRAH  226 (311)
T ss_dssp             HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHH
Confidence            8899999999999 9999999999999998643

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.94  E-value=1.2e-08  Score=75.30  Aligned_cols=75  Identities=20%  Similarity=0.242  Sum_probs=69.6

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~  254 (277)
                      +..++...+++++|+.+|+++++++|.++.++.++|.++. ..+++++|+.+|+++++++|+++.++..++.++..
T Consensus        49 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            3466677899999999999999999999999999999997 89999999999999999999999999999998876

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.94  E-value=1.4e-09  Score=97.29  Aligned_cols=92  Identities=13%  Similarity=0.138  Sum_probs=79.9

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPG--N----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNILSLY  248 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~--n----~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n------~~al~~L  248 (277)
                      .++...+++++|+.+|++|+++.+.  +    ..++.++|.+|. . +++++|+.+|++|+++.|..      ..++.++
T Consensus        84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l  161 (307)
T 2ifu_A           84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA  161 (307)
T ss_dssp             HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            5666779999999999999998543  2    467889999886 6 99999999999999998754      5788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          249 ADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       249 A~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                      |.++.. +|++++|+.+|++++++.|+
T Consensus       162 g~~~~~-~g~~~~A~~~~~~al~~~~~  187 (307)
T 2ifu_A          162 SRLLVR-QQKFDEAAASLQKEKSMYKE  187 (307)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-cCCHHHHHHHHHHHHHHHHH
Confidence            999999 99999999999999998654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.93  E-value=1.9e-09  Score=95.19  Aligned_cols=94  Identities=12%  Similarity=0.075  Sum_probs=79.6

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEA-------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNI  244 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALel-------dP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n------~~a  244 (277)
                      ..+.++...+++++|+.+|++|++.       .+..+.+++++|.+|. ..+++++|+.+|++|+++.+..      +.+
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~-~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~  238 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY-LDSRYEESLYQVNKAIEISCRINSMALIGQL  238 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence            3446677889999999999999953       1223468899999997 8999999999999999987654      789


Q ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 023753          245 LSLYADLIWQAHK-DASRAESYFDQAVKSA  273 (277)
Q Consensus       245 l~~LA~ll~~~~G-d~deAi~~yekALeld  273 (277)
                      ++++|.++.. +| ++++|+.+|++|+.+.
T Consensus       239 ~~~lg~~~~~-~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          239 YYQRGECLRK-LEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHH-TTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-hCCcHHHHHHHHHHHHHHH
Confidence            9999999999 88 5799999999999763

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.93  E-value=3.1e-09  Score=86.28  Aligned_cols=91  Identities=10%  Similarity=0.057  Sum_probs=67.4

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC----HHHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIE------ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA---NPSD----GNILS  246 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALe------ldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel---dP~n----~~al~  246 (277)
                      ..++...+++++|+.+|+++++      ..|..+.++.++|.++. ..|++++|+.+|++|+.+   .+++    ..++.
T Consensus        33 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  111 (203)
T 3gw4_A           33 GYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER-MAGNWDAARRCFLEERELLASLPEDPLAASANAY  111 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence            3555567888888888888888      44455677788887776 678888888888888887   3422    45677


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          247 LYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       247 ~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                      ++|.+++. .|++++|+.+|++++++
T Consensus       112 ~lg~~~~~-~g~~~~A~~~~~~al~~  136 (203)
T 3gw4_A          112 EVATVALH-FGDLAGARQEYEKSLVY  136 (203)
T ss_dssp             HHHHHHHH-HTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-hCCHHHHHHHHHHHHHH
Confidence            78888887 88888888888888765

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.93  E-value=4.3e-09  Score=89.08  Aligned_cols=87  Identities=14%  Similarity=0.092  Sum_probs=80.4

Q ss_pred             CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHH
Q 023753          188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG---DFAKAEELCGRAILAN-P-SDGNILSLYADLIWQAHKDASRA  262 (277)
Q Consensus       188 d~deAi~~yekALeldP~n~~al~nLA~lL~e~~G---d~eeA~e~~ekALeld-P-~n~~al~~LA~ll~~~~Gd~deA  262 (277)
                      ....+...|.++++.+|.+..+.++||++|. ...   ++++|+.+|+.+++.+ | ++.+++|++|..++. .++|++|
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv-~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-l~~Y~~A   90 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLV-RSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TSCHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-ccCHHHH
Confidence            4568899999999999999999999999997 666   7789999999999999 7 678999999999999 9999999


Q ss_pred             HHHHHHHHHhCCCC
Q 023753          263 ESYFDQAVKSAPDD  276 (277)
Q Consensus       263 i~~yekALeldPdD  276 (277)
                      +.+++++|+++|+|
T Consensus        91 ~~y~~~lL~ieP~n  104 (152)
T 1pc2_A           91 LKYVRGLLQTEPQN  104 (152)
T ss_dssp             HHHHHHHHHHCTTC
T ss_pred             HHHHHHHHhcCCCC
Confidence            99999999999987

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.92  E-value=3.9e-09  Score=93.76  Aligned_cols=93  Identities=8%  Similarity=0.060  Sum_probs=83.3

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNA----LLLGNYARFLKEVRGDFAKAEELCGRAILA------NPSDGNILSLYA  249 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~----~al~nLA~lL~e~~Gd~eeA~e~~ekALel------dP~n~~al~~LA  249 (277)
                      +..+...|++++|+.+|+++++++|+++    .++..+|.++. ..+++++|+.+|++|+.+      .|..+.++..+|
T Consensus        16 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la   94 (406)
T 3sf4_A           16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG   94 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            4566678999999999999999999995    67889999887 899999999999999988      455677899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753          250 DLIWQAHKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       250 ~ll~~~~Gd~deAi~~yekALeldP  274 (277)
                      .++.. .|++++|+.+|++++++.|
T Consensus        95 ~~~~~-~g~~~~A~~~~~~al~~~~  118 (406)
T 3sf4_A           95 NTLKV-LGNFDEAIVCCQRHLDISR  118 (406)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-cCCHHHHHHHHHHHHHHHH
Confidence            99999 9999999999999998765

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.91  E-value=3.5e-09  Score=101.06  Aligned_cols=83  Identities=10%  Similarity=0.003  Sum_probs=72.4

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ..+...+++++|+.+|++||+++|+++.+++++|.+|. ..+++++|+.+|++|++++|++..++..++.++.. .++++
T Consensus       325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~-~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~-~~~~~  402 (457)
T 1kt0_A          325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL-LMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK-AKEHN  402 (457)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHH
Confidence            45556789999999999999999999999999999997 89999999999999999999999999999999998 88888


Q ss_pred             HHHHH
Q 023753          261 RAESY  265 (277)
Q Consensus       261 eAi~~  265 (277)
                      +|...
T Consensus       403 ~a~~~  407 (457)
T 1kt0_A          403 ERDRR  407 (457)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77643

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.91  E-value=7.2e-09  Score=91.40  Aligned_cols=93  Identities=15%  Similarity=0.074  Sum_probs=80.6

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMI---EANPGNA----LLLGNYARFLKEVRGDFAKAEELCGRAILANPS------DGNIL  245 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekAL---eldP~n~----~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~------n~~al  245 (277)
                      .+.++...+++++|+.+|++|+   +..|++.    .+++++|.+|. ..+++++|+.+|++|+++.++      -+.++
T Consensus       161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~-~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~  239 (293)
T 2qfc_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY-LDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH-HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            3467777899999999999999   5677654    68999999997 899999999999999998643      27889


Q ss_pred             HHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q 023753          246 SLYADLIWQAHKDASRA-ESYFDQAVKSA  273 (277)
Q Consensus       246 ~~LA~ll~~~~Gd~deA-i~~yekALeld  273 (277)
                      +++|.++.. .|++++| +.+|++|+.+.
T Consensus       240 ~~lg~~y~~-~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          240 YQRGECLRK-LEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHH-TTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-cCCcHHHHHHHHHHHHHHH
Confidence            999999999 9999999 88899998763

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.90  E-value=4.8e-09  Score=95.20  Aligned_cols=93  Identities=13%  Similarity=0.090  Sum_probs=82.9

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAIL-----AN-PSDGNILS  246 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~------~al~nLA~lL~e~~Gd~eeA~e~~ekALe-----ld-P~n~~al~  246 (277)
                      .+.++...+++++|+.+|++|+++.+...      .++.++|.++. ..|++++|+.+|++|++     .+ |..+.++.
T Consensus       190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN-SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            44667778999999999999999865443      58999999997 89999999999999999     56 88899999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753          247 LYADLIWQAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       247 ~LA~ll~~~~Gd~deAi~~yekALeld  273 (277)
                      ++|.++.. .|++++|+.+|++|+++.
T Consensus       269 ~l~~~~~~-~g~~~~A~~~~~~al~~~  294 (383)
T 3ulq_A          269 LITQIHYK-LGKIDKAHEYHSKGMAYS  294 (383)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence            99999999 999999999999999874

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.89  E-value=1.2e-08  Score=74.72  Aligned_cols=69  Identities=17%  Similarity=0.053  Sum_probs=64.9

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       206 n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      .+.+++.+|..+. ..+++++|+.+|++++..+|+++.++..+|.+++. .+++++|+.+|+++++++|++
T Consensus         3 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~   71 (118)
T 1elw_A            3 QVNELKEKGNKAL-SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDW   71 (118)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhCccc
Confidence            4678899999887 89999999999999999999999999999999999 999999999999999999975

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.89  E-value=2.3e-08  Score=86.09  Aligned_cols=87  Identities=17%  Similarity=0.201  Sum_probs=47.4

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPSDGNILSLYADLIWQ--  254 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~----~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~--  254 (277)
                      .++...+++++|+.+|+++++  |+++.+++++|.++. .    .+++++|+.+|++|++++  ++.+++.+|.++..  
T Consensus        14 ~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~   88 (273)
T 1ouv_A           14 AKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYY-QGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQ   88 (273)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred             HHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCC
Confidence            344444555555555555555  455555555555554 4    555555555555555553  55555555555542  


Q ss_pred             -HcCCHHHHHHHHHHHHHh
Q 023753          255 -AHKDASRAESYFDQAVKS  272 (277)
Q Consensus       255 -~~Gd~deAi~~yekALel  272 (277)
                       ..+++++|+.+|++|++.
T Consensus        89 ~~~~~~~~A~~~~~~a~~~  107 (273)
T 1ouv_A           89 GVSQNTNKALQYYSKACDL  107 (273)
T ss_dssp             SSCCCHHHHHHHHHHHHHT
T ss_pred             CcccCHHHHHHHHHHHHHc
Confidence             135555555555555544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.89  E-value=2.2e-09  Score=94.74  Aligned_cols=92  Identities=10%  Similarity=0.049  Sum_probs=76.4

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILA-------NPSDGNILSL  247 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n------~~al~nLA~lL~e~~Gd~eeA~e~~ekALel-------dP~n~~al~~  247 (277)
                      ..+...+++++|+.+|++|+++.+..      ..+++++|.++. ..+++++|+.+|++|+++       .+..+.++++
T Consensus       123 ~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~n  201 (293)
T 3u3w_A          123 AYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN  201 (293)
T ss_dssp             HHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             HHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence            33445579999999999999975543      347899999997 899999999999999953       2234557899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753          248 YADLIWQAHKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       248 LA~ll~~~~Gd~deAi~~yekALeldP  274 (277)
                      +|.+|.. ++++++|+.+|++|+++.+
T Consensus       202 lg~~y~~-~~~y~~A~~~~~~al~~~~  227 (293)
T 3u3w_A          202 HAKALYL-DSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HhHHHHHHHHHHHHHHHHH
Confidence            9999999 9999999999999998764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.89  E-value=8e-09  Score=87.81  Aligned_cols=87  Identities=9%  Similarity=-0.023  Sum_probs=75.3

Q ss_pred             CCCcHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--
Q 023753          186 NHGSSSTDAYYEKMIEANP--GNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK--  257 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP--~n~~al~nLA~lL~e~----~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G--  257 (277)
                      .+++++|+.+|++|++.+|  +++.++++||.+|. .    .+++++|+.+|++|+++ |.++.+++++|.+|....+  
T Consensus       102 ~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~-~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~  179 (212)
T 3rjv_A          102 ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA-SGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGF  179 (212)
T ss_dssp             SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH-HTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTT
T ss_pred             ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCC
Confidence            6789999999999999988  45899999999886 6    67999999999999998 7788899999999987223  


Q ss_pred             ---CHHHHHHHHHHHHHhCC
Q 023753          258 ---DASRAESYFDQAVKSAP  274 (277)
Q Consensus       258 ---d~deAi~~yekALeldP  274 (277)
                         ++++|+.+|++|++...
T Consensus       180 ~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          180 IEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             BCCCHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHcCC
Confidence               89999999999998753

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.88  E-value=1.6e-08  Score=93.54  Aligned_cols=97  Identities=14%  Similarity=0.044  Sum_probs=87.8

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLYADLI---  252 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~G--d~eeA~e~~ekALeldP~n~~al~~LA~ll---  252 (277)
                      |++.++......++|+.++.++|+++|++..+|+..+.++. ..+  ++++|++++++++.++|.+..+|++.+.++   
T Consensus        38 ~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~-~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~  116 (306)
T 3dra_A           38 LLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILK-NLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQI  116 (306)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHH-HcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHH
Confidence            55555666666689999999999999999999999999987 677  999999999999999999999999999998   


Q ss_pred             -HHHc---CCHHHHHHHHHHHHHhCCCC
Q 023753          253 -WQAH---KDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       253 -~~~~---Gd~deAi~~yekALeldPdD  276 (277)
                       .. .   +++++++.+++++++.+|.|
T Consensus       117 ~~~-l~~~~~~~~EL~~~~~~l~~~pkn  143 (306)
T 3dra_A          117 MEL-NNNDFDPYREFDILEAMLSSDPKN  143 (306)
T ss_dssp             HHH-TTTCCCTHHHHHHHHHHHHHCTTC
T ss_pred             HHh-ccccCCHHHHHHHHHHHHHhCCCC
Confidence             55 5   78999999999999999987

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=9.7e-09  Score=78.90  Aligned_cols=74  Identities=16%  Similarity=0.103  Sum_probs=69.5

Q ss_pred             HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          201 EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       201 eldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ..+|.++..++.+|..+. ..+++++|+.+|+++++++|++   ..++..+|.++.. .+++++|+.+|+++++++|++
T Consensus        22 ~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~   98 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELF-KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-LEDYDKAETEASKAIEKDGGD   98 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSCC
T ss_pred             ccchHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHhhCccC
Confidence            457889999999999887 8999999999999999999998   8999999999999 999999999999999999976

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.88  E-value=3.8e-09  Score=84.86  Aligned_cols=73  Identities=11%  Similarity=-0.025  Sum_probs=65.9

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG-NILSLYADLIWQ  254 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~-~al~~LA~ll~~  254 (277)
                      ..+...+++++|+.+|++||+++|+++.+++++|.++. ..|++++|+.+|++|++++|+++ .+...++.+...
T Consensus        71 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A           71 QCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARI-AAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER  144 (162)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            55666799999999999999999999999999999997 89999999999999999999999 667777776655

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.86  E-value=9.6e-09  Score=96.01  Aligned_cols=81  Identities=15%  Similarity=0.028  Sum_probs=74.6

Q ss_pred             HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 023753          183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA  262 (277)
Q Consensus       183 ~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deA  262 (277)
                      +...+++++|+.+|++||+++|+++.+++++|.+|. ..+++++|+.+|++|++++|+++.++..++.++.. .+++++|
T Consensus       283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~-~~~~~~a  360 (370)
T 1ihg_A          283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK-IKAQKDK  360 (370)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHH
Confidence            445789999999999999999999999999999997 89999999999999999999999999999999988 8888877


Q ss_pred             HHH
Q 023753          263 ESY  265 (277)
Q Consensus       263 i~~  265 (277)
                      ...
T Consensus       361 ~k~  363 (370)
T 1ihg_A          361 EKA  363 (370)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.85  E-value=1.3e-08  Score=97.15  Aligned_cols=89  Identities=18%  Similarity=0.240  Sum_probs=76.5

Q ss_pred             CCCcH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHc
Q 023753          186 NHGSS-------STDAYYEKMIE-ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG-NILSLYADLIWQAH  256 (277)
Q Consensus       186 ~Gd~d-------eAi~~yekALe-ldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~-~al~~LA~ll~~~~  256 (277)
                      .|+++       +|+..|++|++ ++|++..+|..++.++. ..|++++|+..|++|++++|.++ .+|..++.++.. .
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~  369 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-A  369 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH-H
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH-h
Confidence            58877       89999999997 89999999999998885 78999999999999999999986 588888888877 7


Q ss_pred             CCHHHHHHHHHHHHHhCCCC
Q 023753          257 KDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       257 Gd~deAi~~yekALeldPdD  276 (277)
                      +++++|+.+|++|++..|.+
T Consensus       370 ~~~~~A~~~~~~Al~~~~~~  389 (530)
T 2ooe_A          370 EGIKSGRMIFKKAREDARTR  389 (530)
T ss_dssp             HHHHHHHHHHHHHHTCTTCC
T ss_pred             cCHHHHHHHHHHHHhccCCc
Confidence            88888888888888776653

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.85  E-value=3.9e-08  Score=84.62  Aligned_cols=83  Identities=13%  Similarity=0.119  Sum_probs=44.8

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCC
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPSDGNILSLYADLIWQ---AHKD  258 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~----~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~---~~Gd  258 (277)
                      .+++++|+.+|++|++++  ++.+++++|.++. .    .+++++|+.+|++|++.+  ++.+++++|.++..   ..++
T Consensus        55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~  129 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYY-SGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRD  129 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCC
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHh-CCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccC
Confidence            455555555555555553  4555555555554 4    555555555555555542  55555555555542   1355


Q ss_pred             HHHHHHHHHHHHHhC
Q 023753          259 ASRAESYFDQAVKSA  273 (277)
Q Consensus       259 ~deAi~~yekALeld  273 (277)
                      +++|+.+|++|++.+
T Consensus       130 ~~~A~~~~~~a~~~~  144 (273)
T 1ouv_A          130 FKKAVEYFTKACDLN  144 (273)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcC
Confidence            555555555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.85  E-value=2e-08  Score=99.48  Aligned_cols=87  Identities=13%  Similarity=0.055  Sum_probs=53.4

Q ss_pred             CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753          188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD----------FAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (277)
Q Consensus       188 d~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd----------~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G  257 (277)
                      ..++|++++.+||+++|++..+|+..+.++. ..++          +++|++++++|++.+|++..+|++.++++.. .+
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~-~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~-l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQ-HLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CS
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHH-hcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cc
Confidence            3445566666666666666666666666554 3444          6666666666666666666666666666655 55


Q ss_pred             --CHHHHHHHHHHHHHhCCCC
Q 023753          258 --DASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       258 --d~deAi~~yekALeldPdD  276 (277)
                        ++++|+++++++++++|.|
T Consensus       122 ~~~~~~el~~~~k~l~~d~~N  142 (567)
T 1dce_A          122 EPNWARELELCARFLEADERN  142 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTC
T ss_pred             cccHHHHHHHHHHHHhhcccc
Confidence              4466666666666666654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.84  E-value=9.1e-09  Score=93.58  Aligned_cols=96  Identities=14%  Similarity=0.015  Sum_probs=84.7

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHH
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPG------NALLLGNYARFLKEVRGDFAKAEELCGRAIL-----ANPSDGNILS  246 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~------n~~al~nLA~lL~e~~Gd~eeA~e~~ekALe-----ldP~n~~al~  246 (277)
                      ..+.++...+++++|+.+|++|+++.+.      ...++.++|.++. ..+++++|+.+|++|+.     .+|..+.++.
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  265 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD-RSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF  265 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence            4456777889999999999999997431      2468899999997 89999999999999999     8888899999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          247 LYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       247 ~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                      ++|.++.. .|++++|+.+|++|+++.+.
T Consensus       266 ~la~~~~~-~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          266 GLSWTLCK-AGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence            99999999 99999999999999998654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.84  E-value=7.4e-09  Score=77.27  Aligned_cols=70  Identities=14%  Similarity=0.197  Sum_probs=64.6

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       205 ~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ..+.+++.+|.++. ..+++++|+.+|++++..+|.++.++..+|.++.. .+++++|+.+|++++++.|++
T Consensus         2 ~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A            2 KQALKEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhcccc
Confidence            34678899999887 79999999999999999999999999999999999 999999999999999997753

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.83  E-value=1.5e-08  Score=96.59  Aligned_cols=97  Identities=14%  Similarity=0.207  Sum_probs=57.4

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~-~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~  256 (277)
                      .|..++...|++++|+..|+++++++|.++ .+|.+++.++. ..+++++|+.+|++|++..|.+..++...+.+.+...
T Consensus       326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~  404 (530)
T 2ooe_A          326 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS  404 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHc
Confidence            445667778999999999999999999986 58888887654 3444444444444444444443333333333322113


Q ss_pred             CCHHHHHHHHHHHHHhCCC
Q 023753          257 KDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       257 Gd~deAi~~yekALeldPd  275 (277)
                      |++++|+.+|++|++.+|+
T Consensus       405 ~~~~~A~~~~e~al~~~p~  423 (530)
T 2ooe_A          405 KDKSVAFKIFELGLKKYGD  423 (530)
T ss_dssp             CCHHHHHHHHHHHHHHHTT
T ss_pred             CChhHHHHHHHHHHHHCCC
Confidence            4444444444444444443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.83  E-value=3.4e-09  Score=96.17  Aligned_cols=92  Identities=15%  Similarity=0.018  Sum_probs=71.4

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHh---CC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEA---NP---GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-------DGNILSL  247 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALel---dP---~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~-------n~~al~~  247 (277)
                      ..+...+++++|+.+|++|+++   .+   ..+.+++++|.++. ..+++++|+.+|++|+++.+.       .+.++.+
T Consensus       111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  189 (383)
T 3ulq_A          111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY-YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL  189 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            4455678889999999998887   22   34578888888886 788888888888888887443       3457888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753          248 YADLIWQAHKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       248 LA~ll~~~~Gd~deAi~~yekALeldP  274 (277)
                      +|.++.. .|++++|+.+|++|+++.|
T Consensus       190 lg~~~~~-~g~~~~A~~~~~~al~~~~  215 (383)
T 3ulq_A          190 FATNFLD-LKQYEDAISHFQKAYSMAE  215 (383)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-hcCHHHHHHHHHHHHHHHH
Confidence            8888888 8888888888888887644

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.82  E-value=1.1e-08  Score=95.22  Aligned_cols=88  Identities=14%  Similarity=0.181  Sum_probs=79.6

Q ss_pred             CCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCC
Q 023753          187 HGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEV-----RGDFAKAEELCGRAILANPSD-GNILSLYADLIWQAHKD  258 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~--n~~al~nLA~lL~e~-----~Gd~eeA~e~~ekALeldP~n-~~al~~LA~ll~~~~Gd  258 (277)
                      ....+|...+++||++||+  +..+|..+|.+|. .     .|+.++|+++|++|++++|+. ..+++.+|..+....++
T Consensus       177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~-~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYA-AAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-HSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred             HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHH-hCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence            4567999999999999999  6779999999886 5     499999999999999999975 99999999999873499


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 023753          259 ASRAESYFDQAVKSAPD  275 (277)
Q Consensus       259 ~deAi~~yekALeldPd  275 (277)
                      +++|..++++|++.+|.
T Consensus       256 ~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          256 RAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            99999999999999886

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.82  E-value=8.6e-09  Score=87.91  Aligned_cols=95  Identities=11%  Similarity=0.022  Sum_probs=75.4

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNILS  246 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n------~~al~  246 (277)
                      ...++...+++++|+.+|++++++.+..      ..++..+|.++. ..|++++|+.+|++|+.+.+..      ..++.
T Consensus       229 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  307 (338)
T 3ro2_A          229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACW  307 (338)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            3455666788999999999998887665      677888888886 7899999999999998886543      55788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          247 LYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       247 ~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                      .+|.++.. .|++++|+.+|++++++.+.
T Consensus       308 ~la~~~~~-~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          308 SLGNAYTA-LGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHH-HTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHH-cCChHHHHHHHHHHHHHHHh
Confidence            88998888 89999999999999988764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.81  E-value=1.4e-08  Score=90.09  Aligned_cols=94  Identities=11%  Similarity=0.019  Sum_probs=78.1

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNIL  245 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n------~~al  245 (277)
                      ....++...+++++|+.+|++++++.|..      ..++.++|.++. ..|++++|+.+|++|+++.+..      +.++
T Consensus       232 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  310 (406)
T 3sf4_A          232 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC  310 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            34466667889999999999999887766      678888998886 7899999999999999886544      6678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753          246 SLYADLIWQAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       246 ~~LA~ll~~~~Gd~deAi~~yekALeld  273 (277)
                      ..+|.++.. .|++++|+.+|++|+++.
T Consensus       311 ~~la~~~~~-~g~~~~A~~~~~~al~~~  337 (406)
T 3sf4_A          311 WSLGNAYTA-LGNHDQAMHFAEKHLEIS  337 (406)
T ss_dssp             HHHHHHHHH-HTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHHHH
Confidence            889999988 899999999999998774

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.80  E-value=1.8e-08  Score=99.86  Aligned_cols=86  Identities=14%  Similarity=0.151  Sum_probs=82.6

Q ss_pred             cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHH
Q 023753          189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLYADLIWQAHK-DASRAESY  265 (277)
Q Consensus       189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~G--d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G-d~deAi~~  265 (277)
                      +++|+++|++|++.+|.+..+|++.++++. ..+  ++++|++++++|++++|+|..+|.+.+.++.. .+ .+++|+++
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~-~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~-l~~~~~~el~~  166 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELAF  166 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHH-cCCChHHHHHH
Confidence            899999999999999999999999999996 788  77999999999999999999999999999998 88 99999999


Q ss_pred             HHHHHHhCCCC
Q 023753          266 FDQAVKSAPDD  276 (277)
Q Consensus       266 yekALeldPdD  276 (277)
                      ++++|+.+|.|
T Consensus       167 ~~~~I~~~p~n  177 (567)
T 1dce_A          167 TDSLITRNFSN  177 (567)
T ss_dssp             HHTTTTTTCCC
T ss_pred             HHHHHHHCCCC
Confidence            99999999987

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.80  E-value=7e-09  Score=88.15  Aligned_cols=60  Identities=12%  Similarity=0.125  Sum_probs=53.3

Q ss_pred             cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023753          189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVR-----------GDFAKAEELCGRAILANPSDGNILSLYA  249 (277)
Q Consensus       189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~-----------Gd~eeA~e~~ekALeldP~n~~al~~LA  249 (277)
                      +++|+..|++||+++|+++.+|+++|.+|. ..           +++++|+++|++|++++|++..+...+.
T Consensus        62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~-~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~  132 (158)
T 1zu2_A           62 IQEAITKFEEALLIDPKKDEAVWCIGNAYT-SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            569999999999999999999999999997 44           4899999999999999999986655443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.79  E-value=3.6e-08  Score=93.20  Aligned_cols=97  Identities=11%  Similarity=0.082  Sum_probs=88.9

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~G-d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~  256 (277)
                      |++.++......++|++++.++|++||++..+|+..+.++. ..+ ++++|++++++++..+|++..+|++.+.++.. .
T Consensus        59 ~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~-~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~-l  136 (349)
T 3q7a_A           59 YFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLT-SLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR-I  136 (349)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-h
Confidence            55666666777789999999999999999999999999986 677 69999999999999999999999999999988 5


Q ss_pred             -C-CHHHHHHHHHHHHHhCCCC
Q 023753          257 -K-DASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       257 -G-d~deAi~~yekALeldPdD  276 (277)
                       + ++++++++++++++++|.|
T Consensus       137 ~~~~~~~EL~~~~k~L~~dpkN  158 (349)
T 3q7a_A          137 SPQDPVSEIEYIHGSLLPDPKN  158 (349)
T ss_dssp             CCSCCHHHHHHHHHHTSSCTTC
T ss_pred             cCCChHHHHHHHHHHHHhCCCC
Confidence             7 8999999999999999987

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.79  E-value=2.2e-08  Score=88.99  Aligned_cols=71  Identities=20%  Similarity=0.118  Sum_probs=68.1

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          204 PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       204 P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      |.++.+++.+|..+. ..|++++|+.+|++|++++|+++.+++++|.++.. .+++++|+.+|++|++++|++
T Consensus         1 p~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~   71 (281)
T 2c2l_A            1 SPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQS   71 (281)
T ss_dssp             CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTC
T ss_pred             ChhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCC
Confidence            678899999999997 89999999999999999999999999999999999 999999999999999999986

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.78  E-value=1.7e-08  Score=81.81  Aligned_cols=93  Identities=15%  Similarity=0.055  Sum_probs=77.4

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEA---NPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANP--SD----GNIL  245 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALel---dP~n----~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP--~n----~~al  245 (277)
                      ...++...|++++|+.+|++++++   .+++    ..++.++|.++. ..|++++|+.+|++++.+.+  .+    ..++
T Consensus        72 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  150 (203)
T 3gw4_A           72 VGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL-HFGDLAGARQEYEKSLVYAQQADDQVAIACAF  150 (203)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            345667789999999999999998   4433    567899999887 79999999999999997643  23    2346


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753          246 SLYADLIWQAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       246 ~~LA~ll~~~~Gd~deAi~~yekALeld  273 (277)
                      .++|.++.. .|++++|+.+|++|+++.
T Consensus       151 ~~la~~~~~-~g~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          151 RGLGDLAQQ-EKNLLEAQQHWLRARDIF  177 (203)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence            889999999 999999999999999863

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.78  E-value=3.5e-08  Score=74.28  Aligned_cols=75  Identities=13%  Similarity=0.097  Sum_probs=63.1

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYADLIWQ  254 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~--n~~al~~LA~ll~~  254 (277)
                      ++.++...+++++|+.+|+++++++|+++.+|+++|.++. ..|++++|+++|++|+++.|.  +..+...+..++..
T Consensus        13 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l~~   89 (100)
T 3ma5_A           13 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE-RLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLK   89 (100)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHH
Confidence            4467777899999999999999999999999999999997 899999999999999999774  44455555554433

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.78  E-value=4.1e-08  Score=93.75  Aligned_cols=102  Identities=10%  Similarity=0.011  Sum_probs=81.7

Q ss_pred             CcchhhHHHHHHh----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH-------------------------------
Q 023753          173 SGFSGSNNNYSNN----NHGSSSTDAYYEKMIEANPGNALLLGNYARFL-------------------------------  217 (277)
Q Consensus       173 ~~~~~yY~~m~e~----~Gd~deAi~~yekALeldP~n~~al~nLA~lL-------------------------------  217 (277)
                      ++++.|++.....    ..++.+|+.+|++|+++||+++.++..++.++                               
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~  274 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN  274 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence            4566677643332    24567999999999999999988777544322                               


Q ss_pred             ------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          218 ------------KEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       218 ------------~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                                  ....|++++|+.++++|+.++|+ ..++..+|.++.. .|++++|++.|++|+.++|.+
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~-~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM-KGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCSH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCc
Confidence                        11368999999999999999974 7788889999988 999999999999999999963

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.78  E-value=6.6e-09  Score=93.62  Aligned_cols=94  Identities=11%  Similarity=-0.049  Sum_probs=79.1

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNILS  246 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~------al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n------~~al~  246 (277)
                      ...++...+++++|+.+|++++++.|.+..      ++.++|.++. ..+++++|+.+|++++.+.|..      ..++.
T Consensus       229 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  307 (411)
T 4a1s_A          229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI-FLGQFEDAAEHYKRTLALAVELGEREVEAQSCY  307 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            345666789999999999999998775433      7889998886 7899999999999999988754      67888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753          247 LYADLIWQAHKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       247 ~LA~ll~~~~Gd~deAi~~yekALeldP  274 (277)
                      .+|.++.. .|++++|+.+|++++++.+
T Consensus       308 ~la~~~~~-~g~~~~A~~~~~~al~~~~  334 (411)
T 4a1s_A          308 SLGNTYTL-LHEFNTAIEYHNRHLAIAQ  334 (411)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-cCCHHHHHHHHHHHHHHHH
Confidence            89999988 9999999999999988744

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.77  E-value=9.4e-08  Score=76.71  Aligned_cols=90  Identities=17%  Similarity=0.121  Sum_probs=78.7

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~----~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~  254 (277)
                      +..++......++|+.+|++|.+.  +++.+++++|.+|. .    .+|+++|+.+|++|++.  .++.+++++|.+|..
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYE-NGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            556666667788899999999987  78999999999886 5    78999999999999987  789999999999876


Q ss_pred             H---cCCHHHHHHHHHHHHHhC
Q 023753          255 A---HKDASRAESYFDQAVKSA  273 (277)
Q Consensus       255 ~---~Gd~deAi~~yekALeld  273 (277)
                      -   .+|+++|+.+|++|.+..
T Consensus       106 G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A          106 GKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCcCHHHHHHHHHHHHHCC
Confidence            2   479999999999999874

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.76  E-value=9.6e-08  Score=72.38  Aligned_cols=75  Identities=11%  Similarity=-0.006  Sum_probs=66.6

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~  254 (277)
                      ....+...+++++|+.+|+++++.+|++   +.+++++|.++. ..|++++|+.+|+++++..|+++.+......+...
T Consensus        45 lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           45 LGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY-GEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            4466777899999999999999999999   899999999997 89999999999999999999999887776665544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.73  E-value=3.7e-08  Score=83.72  Aligned_cols=68  Identities=22%  Similarity=0.203  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 023753          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-------DGN-----ILSLYADLIWQAHKDASRAESYFDQAVKS--  272 (277)
Q Consensus       207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~-------n~~-----al~~LA~ll~~~~Gd~deAi~~yekALel--  272 (277)
                      +..+.+.|..++ ..|+|++|+.+|++||+++|+       +..     +|.++|.++.. +|+|++|+.+|++||++  
T Consensus        11 a~~~~~~G~~l~-~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~-Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A           11 AYLALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhh
Confidence            566889999887 899999999999999999999       544     99999999999 99999999999999999  


Q ss_pred             -----CCCC
Q 023753          273 -----APDD  276 (277)
Q Consensus       273 -----dPdD  276 (277)
                           +|++
T Consensus        89 ~~~e~~pd~   97 (159)
T 2hr2_A           89 RRGELNQDE   97 (159)
T ss_dssp             HHCCTTSTH
T ss_pred             ccccCCCch
Confidence                 9975

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.73  E-value=2.6e-08  Score=84.66  Aligned_cols=88  Identities=14%  Similarity=0.180  Sum_probs=46.8

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG----DFAKAEELCGRAILANPSDGNILSLYADLIWQ--  254 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~G----d~eeA~e~~ekALeldP~n~~al~~LA~ll~~--  254 (277)
                      .++...+++++|+.+|++|++.  +++.+++++|.+|. . +    ++++|+.+|++|++  +.++.+++++|.+|..  
T Consensus        26 ~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~-~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~   99 (212)
T 3rjv_A           26 DTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKI-R-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQ   99 (212)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTT-S-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGG
T ss_pred             HHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH-c-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCC
Confidence            4444445566666666665543  35555556655553 2 4    55566666665533  3455555555555532  


Q ss_pred             -HcCCHHHHHHHHHHHHHhCC
Q 023753          255 -AHKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       255 -~~Gd~deAi~~yekALeldP  274 (277)
                       ..+++++|+.+|++|++..|
T Consensus       100 g~~~d~~~A~~~~~~A~~~~~  120 (212)
T 3rjv_A          100 AGATDVAHAITLLQDAARDSE  120 (212)
T ss_dssp             GSSCCHHHHHHHHHHHTSSTT
T ss_pred             CCccCHHHHHHHHHHHHHcCC
Confidence             12455555555555555544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.73  E-value=9.6e-08  Score=88.20  Aligned_cols=88  Identities=13%  Similarity=0.160  Sum_probs=83.5

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC------
Q 023753          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFA--KAEELCGRAILANPSDGNILSLYADLIWQAHKD------  258 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~e--eA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd------  258 (277)
                      +++++++.++.++++++|.|..+|++.+.++. ..++++  +++++++++|+++|.|..+|.+.+.++.. .++      
T Consensus       124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~-~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~-l~~~~~~~~  201 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVD-TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS-KKHLATDNT  201 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS-SGGGCCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-ccccchhhh
Confidence            68999999999999999999999999999886 788888  99999999999999999999999999888 777      


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 023753          259 ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       259 ~deAi~~yekALeldPdD  276 (277)
                      +++++++++++|.++|+|
T Consensus       202 ~~eEl~~~~~aI~~~p~n  219 (306)
T 3dra_A          202 IDEELNYVKDKIVKCPQN  219 (306)
T ss_dssp             HHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            999999999999999997

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.71  E-value=1.2e-07  Score=88.90  Aligned_cols=97  Identities=12%  Similarity=-0.017  Sum_probs=82.7

Q ss_pred             hHHHHHH-hCC--CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023753          178 SNNNYSN-NNH--GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD-FAKAEELCGRAILANPSDGNILSLYADLIW  253 (277)
Q Consensus       178 yY~~m~e-~~G--d~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd-~eeA~e~~ekALeldP~n~~al~~LA~ll~  253 (277)
                      +++.++. ..+  ++++++.++.+++++||.|..+|+..+.++. ..+. ++++++++.++|+.+|.|..+|.+.+.++.
T Consensus       112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~-~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~  190 (331)
T 3dss_A          112 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAA-QAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP  190 (331)
T ss_dssp             HHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            4443333 334  4789999999999999999999999998886 6777 699999999999999999999999999888


Q ss_pred             HHc--------------CCHHHHHHHHHHHHHhCCCC
Q 023753          254 QAH--------------KDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       254 ~~~--------------Gd~deAi~~yekALeldPdD  276 (277)
                      . .              +.++++++++++||.++|+|
T Consensus       191 ~-l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d  226 (331)
T 3dss_A          191 Q-LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND  226 (331)
T ss_dssp             H-HSCCC------CCCHHHHHHHHHHHHHHHHHSTTC
T ss_pred             H-hhhccccccccccchHHHHHHHHHHHHHHHhCCCC
Confidence            7 5              45889999999999999987

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.71  E-value=6.7e-08  Score=73.15  Aligned_cols=74  Identities=12%  Similarity=0.108  Sum_probs=62.5

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYADLIW  253 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~--n~~al~~LA~ll~  253 (277)
                      +..++...+++++|+.+|+++++++|+++.+++++|.++. ..|++++|+.+|++|++++|.  +..++..+..++.
T Consensus        25 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~  100 (115)
T 2kat_A           25 LGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ-GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLR  100 (115)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence            3466777899999999999999999999999999999997 899999999999999999884  4455544444443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.70  E-value=3.6e-08  Score=96.56  Aligned_cols=88  Identities=10%  Similarity=0.064  Sum_probs=76.1

Q ss_pred             HHhCCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHH
Q 023753          183 SNNNHGSSSTDAYYEKMIEA-----NPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILA-----NPSDGN---ILS  246 (277)
Q Consensus       183 ~e~~Gd~deAi~~yekALel-----dP~n~---~al~nLA~lL~e~~Gd~eeA~e~~ekALel-----dP~n~~---al~  246 (277)
                      +..+|++++|+..|+++|++     .|+++   ..+.++|.+|. .+|+|++|+.+|++|+++     -|++|.   .++
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLS-YLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            44679999999999999987     45665   56889999997 899999999999999987     355554   588


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          247 LYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       247 ~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                      ++|.+|+. +|++++|+.+|++|+++
T Consensus       398 nLa~~~~~-~G~~~eA~~~~~~Al~i  422 (490)
T 3n71_A          398 RAGLTNWH-AGHIEVGHGMICKAYAI  422 (490)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence            99999999 99999999999999976

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.70  E-value=2.9e-08  Score=95.86  Aligned_cols=85  Identities=13%  Similarity=0.024  Sum_probs=74.2

Q ss_pred             CCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHH
Q 023753          186 NHGSSSTDAYYEKMIEA-----NPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILA-----NPSDGN---ILSLYA  249 (277)
Q Consensus       186 ~Gd~deAi~~yekALel-----dP~n~---~al~nLA~lL~e~~Gd~eeA~e~~ekALel-----dP~n~~---al~~LA  249 (277)
                      .|+|++|+..|+++|++     .|+++   ..+.++|.+|. .+|+|++|+.+|++|+++     -|+.|.   .++++|
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL-YMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            47899999999999985     57775   56889999997 899999999999999987     355544   588999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Q 023753          250 DLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       250 ~ll~~~~Gd~deAi~~yekALel  272 (277)
                      .+|+. +|++++|+.+|++|+++
T Consensus       390 ~~~~~-qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          390 RLYMG-LENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHh-ccCHHHHHHHHHHHHHH
Confidence            99999 99999999999999986

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.66  E-value=3.2e-08  Score=91.09  Aligned_cols=67  Identities=13%  Similarity=-0.047  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PS-DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld--P~-n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                      ..+++++|.++. ..|++++|+.+|++++...  |. .+.+++++|.++.. +|+.++|+.+|++++..+|+
T Consensus       171 ~~a~~~LG~al~-~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~-lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          171 GAAGVAHGVAAA-NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS-QGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCc
Confidence            347889998886 8999999999999998654  55 66789999999999 99999999999999999986

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.64  E-value=5e-08  Score=88.65  Aligned_cols=91  Identities=14%  Similarity=-0.007  Sum_probs=70.8

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANP------GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-------DGNILSL  247 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP------~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~-------n~~al~~  247 (277)
                      ..+...+++++|+.+|++|+++.+      ..+.+++++|.++. ..+++++|+.++++|+++.+.       .+.++.+
T Consensus       109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  187 (378)
T 3q15_A          109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY-HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV  187 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence            334567889999999999987732      24567888888887 788899999999998887543       2446778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753          248 YADLIWQAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       248 LA~ll~~~~Gd~deAi~~yekALeld  273 (277)
                      +|.++.. .|++++|+.+|++|+++.
T Consensus       188 lg~~y~~-~~~~~~A~~~~~~al~~~  212 (378)
T 3q15_A          188 IAGNYDD-FKHYDKALPHLEAALELA  212 (378)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-hCCHHHHHHHHHHHHHHH
Confidence            8888888 899999999998888763

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.60  E-value=2.4e-07  Score=82.99  Aligned_cols=94  Identities=15%  Similarity=0.046  Sum_probs=80.8

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEAN--------PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-----DGNIL  245 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeld--------P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~-----n~~al  245 (277)
                      ...++...|++++|+.+|++++++.        |....++.++|.++. ..|++++|+.+|++++.+.+.     ...++
T Consensus        99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  177 (373)
T 1hz4_A           99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW-AWARLDEAEASARSGIEVLSSYQPQQQLQCL  177 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence            4466677899999999999999975        344567888999887 799999999999999999875     34678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753          246 SLYADLIWQAHKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       246 ~~LA~ll~~~~Gd~deAi~~yekALeldP  274 (277)
                      ..+|.++.. .|++++|+.++++++++.+
T Consensus       178 ~~la~~~~~-~g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          178 AMLIQCSLA-RGDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             HHHHHHHHH-HTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHHHHh
Confidence            889999999 9999999999999998743

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.58  E-value=5e-07  Score=84.64  Aligned_cols=86  Identities=14%  Similarity=0.141  Sum_probs=81.0

Q ss_pred             cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-HHHHHHH
Q 023753          189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD-ASRAESY  265 (277)
Q Consensus       189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~G--d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd-~deAi~~  265 (277)
                      +++++.++.+++..+|.+..+|++.+.++. ..+  +++++++++.++++++|.|..+|.+.+.++.. .+. +++++++
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~-~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~-l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHh-ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCcCHHHHHHH
Confidence            679999999999999999999999999986 677  59999999999999999999999999999988 888 6999999


Q ss_pred             HHHHHHhCCCC
Q 023753          266 FDQAVKSAPDD  276 (277)
Q Consensus       266 yekALeldPdD  276 (277)
                      ++++|+.+|.|
T Consensus       168 ~~~~I~~~p~N  178 (331)
T 3dss_A          168 TDSLITRNFSN  178 (331)
T ss_dssp             HHHHHHHCSCC
T ss_pred             HHHHHHHCCCC
Confidence            99999999987

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.58  E-value=1.1e-07  Score=85.27  Aligned_cols=93  Identities=14%  Similarity=0.121  Sum_probs=76.0

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILAN--------PSDGNILS  246 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~------~al~nLA~lL~e~~Gd~eeA~e~~ekALeld--------P~n~~al~  246 (277)
                      .++...|++++|+.+|++++++.|...      .++.++|.++. ..|++++|+.+|++++++.        |....++.
T Consensus        61 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  139 (373)
T 1hz4_A           61 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF-AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR  139 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHH
Confidence            455567999999999999998766432      34678888886 7899999999999999875        33456778


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          247 LYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       247 ~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                      ++|.+++. .|++++|+.+|++++++.|.
T Consensus       140 ~la~~~~~-~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          140 IRAQLLWA-WARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHH-hcCHHHHHHHHHHHHHHhhc
Confidence            89999998 99999999999999988774

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.57  E-value=1e-07  Score=91.52  Aligned_cols=86  Identities=13%  Similarity=-0.058  Sum_probs=74.5

Q ss_pred             hCCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHH
Q 023753          185 NNHGSSSTDAYYEKMIEA-----NPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILA-----NPSDGN---ILSLY  248 (277)
Q Consensus       185 ~~Gd~deAi~~yekALel-----dP~n~---~al~nLA~lL~e~~Gd~eeA~e~~ekALel-----dP~n~~---al~~L  248 (277)
                      .++++++|+..|++++++     .|+++   ..+.++|.+|. .+|+|++|+.++++++++     -|++|.   .++++
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~-~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL  377 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI-NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV  377 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence            468999999999999976     46665   56889999887 799999999999999976     355555   58899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          249 ADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       249 A~ll~~~~Gd~deAi~~yekALel  272 (277)
                      |.+|+. +|++++|+.+|++|+++
T Consensus       378 a~~~~~-~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          378 GKLQLH-QGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHh-cCCHHHHHHHHHHHHHH
Confidence            999999 99999999999999976

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.54  E-value=5.8e-07  Score=68.87  Aligned_cols=71  Identities=13%  Similarity=0.092  Sum_probs=61.5

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEAN-------PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeld-------P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~  250 (277)
                      .+..+...++|..|+.+|++|++..       +..+.++.+||.+++ ..|++++|+.++++|++++|+++.++.+++.
T Consensus        11 lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~   88 (104)
T 2v5f_A           11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNLKY   88 (104)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHhhHHH
Confidence            4566777899999999999999973       345788999999998 8999999999999999999999999888873

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.52  E-value=3e-07  Score=86.91  Aligned_cols=98  Identities=7%  Similarity=-0.012  Sum_probs=86.5

Q ss_pred             hhHHH-HHHhCC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023753          177 GSNNN-YSNNNH-GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR-G-DFAKAEELCGRAILANPSDGNILSLYADLI  252 (277)
Q Consensus       177 ~yY~~-m~e~~G-d~deAi~~yekALeldP~n~~al~nLA~lL~e~~-G-d~eeA~e~~ekALeldP~n~~al~~LA~ll  252 (277)
                      .+|++ ++...+ .+++++.++.++|+.+|.+..+|+..+.++. .. + ++++++++++++++++|.|..+|.+.+.++
T Consensus        91 Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~-~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl  169 (349)
T 3q7a_A           91 WQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD-RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLY  169 (349)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            35553 333446 5999999999999999999999999999987 55 7 899999999999999999999999999998


Q ss_pred             HHHcCCHH--------HHHHHHHHHHHhCCCC
Q 023753          253 WQAHKDAS--------RAESYFDQAVKSAPDD  276 (277)
Q Consensus       253 ~~~~Gd~d--------eAi~~yekALeldPdD  276 (277)
                      .. .+.++        +++++++++|+.+|.|
T Consensus       170 ~~-l~~~~~~~~~~~~eELe~~~k~I~~dp~N  200 (349)
T 3q7a_A          170 SH-FSTLGRISEAQWGSELDWCNEMLRVDGRN  200 (349)
T ss_dssp             HH-HHHTTCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HH-hccccccchhhHHHHHHHHHHHHHhCCCC
Confidence            87 77777        9999999999999987

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.50  E-value=8.3e-07  Score=83.70  Aligned_cols=82  Identities=15%  Similarity=0.127  Sum_probs=66.9

Q ss_pred             CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHH
Q 023753          188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPSDGNILSLYADLIWQ---AHKDAS  260 (277)
Q Consensus       188 d~deAi~~yekALeldP~n~~al~nLA~lL~e~----~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~---~~Gd~d  260 (277)
                      ++++|+.+|++|++.  +++.+++++|.+|. .    .+++++|+.+|++|++.  .++.+++++|.+|..   ..+|++
T Consensus       346 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~  420 (490)
T 2xm6_A          346 EHKKAVEWFRKAAAK--GEKAAQFNLGNALL-QGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYV  420 (490)
T ss_dssp             HHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence            677888888888887  67888888888876 5    67889999999998875  468888888888875   147889


Q ss_pred             HHHHHHHHHHHhCC
Q 023753          261 RAESYFDQAVKSAP  274 (277)
Q Consensus       261 eAi~~yekALeldP  274 (277)
                      +|+.+|++|++..|
T Consensus       421 ~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          421 QAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCC
Confidence            99999999988874

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.49  E-value=8.7e-07  Score=67.89  Aligned_cols=61  Identities=13%  Similarity=0.189  Sum_probs=54.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          214 ARFLKEVRGDFAKAEELCGRAILAN-------PSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       214 A~lL~e~~Gd~eeA~e~~ekALeld-------P~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      |.+++ ..++|..|+..|++|++..       +..+.++..||.+++. +|++++|+.++++|++++|++
T Consensus        12 G~~~~-~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~   79 (104)
T 2v5f_A           12 GKVAY-TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEH   79 (104)
T ss_dssp             HHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHH-HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCC
Confidence            55666 7899999999999999974       3568899999999999 999999999999999999986

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.47  E-value=5.4e-07  Score=85.52  Aligned_cols=92  Identities=15%  Similarity=0.112  Sum_probs=74.5

Q ss_pred             hHHHHHHhCC---CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023753          178 SNNNYSNNNH---GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR----GDFAKAEELCGRAILANPSDGNILSLYAD  250 (277)
Q Consensus       178 yY~~m~e~~G---d~deAi~~yekALeldP~n~~al~nLA~lL~e~~----Gd~eeA~e~~ekALeldP~n~~al~~LA~  250 (277)
                      .+..++...+   ++++|+.+|+++++.+|.++.+++++|.+|. ..    +++++|+.+|++|+   |.++.+++++|.
T Consensus       181 ~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~-~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~  256 (452)
T 3e4b_A          181 ELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLG-DATLGTPDEKTAQALLEKIA---PGYPASWVSLAQ  256 (452)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHT-CGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHH
T ss_pred             HHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence            4446666677   8889999999999999999988888988774 33    68899999999987   888899999998


Q ss_pred             HHH--HHcCCHHHHHHHHHHHHHhC
Q 023753          251 LIW--QAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       251 ll~--~~~Gd~deAi~~yekALeld  273 (277)
                      +|+  ...+++++|+.+|++|++..
T Consensus       257 ~~~~~~~~~d~~~A~~~~~~Aa~~g  281 (452)
T 3e4b_A          257 LLYDFPELGDVEQMMKYLDNGRAAD  281 (452)
T ss_dssp             HHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred             HHHhCCCCCCHHHHHHHHHHHHHCC
Confidence            854  22788899999999888653

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.43  E-value=9.9e-07  Score=67.46  Aligned_cols=54  Identities=15%  Similarity=0.070  Sum_probs=50.9

Q ss_pred             cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 023753          189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN  243 (277)
Q Consensus       189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~  243 (277)
                      .++|..++++||++||+++.+++.+|..++ ..|+|++|+.+|+++++.+|.++.
T Consensus        25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~-~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A           25 TDEVSLLLEQALQLEPYNEAALSLIANDHF-ISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CHHHHHHHHHHHHHCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCcc
Confidence            799999999999999999999999999997 799999999999999999998544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.34  E-value=1.4e-06  Score=82.59  Aligned_cols=80  Identities=11%  Similarity=0.022  Sum_probs=43.0

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cC
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-----DFAKAEELCGRAILANPSDGNILSLYADLIWQA---HK  257 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~G-----d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~---~G  257 (277)
                      .+++++|+.+|++|++.  +++.+++++|.+|.  .|     |+++|+.+|++|+   |.++.+++++|.+|..-   ..
T Consensus       264 ~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~--~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~  336 (452)
T 3e4b_A          264 LGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY--EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKV  336 (452)
T ss_dssp             GCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH--HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSC
T ss_pred             CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH--cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCc
Confidence            45555555555555543  25555555555543  23     5566666666555   55556666666555430   11


Q ss_pred             CHHHHHHHHHHHHHh
Q 023753          258 DASRAESYFDQAVKS  272 (277)
Q Consensus       258 d~deAi~~yekALel  272 (277)
                      |+++|+.+|++|.+.
T Consensus       337 d~~~A~~~~~~Aa~~  351 (452)
T 3e4b_A          337 YPQKALDHLLTAARN  351 (452)
T ss_dssp             CHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHhh
Confidence            566666666665543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.32  E-value=2.1e-06  Score=70.45  Aligned_cols=88  Identities=13%  Similarity=0.049  Sum_probs=77.9

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDF---AKAEELCGRAILAN-P-SDGNILSLYADLIWQAHKDASR  261 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~---eeA~e~~ekALeld-P-~n~~al~~LA~ll~~~~Gd~de  261 (277)
                      .....+...|.++++.++.+..+.++||++|. ...+.   .+++..++..+..+ | ..-+.++.+|..+++ .|+|++
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv-~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk-lg~Y~~   92 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLV-RTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHT-TSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-hhhHHH
Confidence            45678899999999999999999999999986 55544   45999999999987 5 577899999999999 999999


Q ss_pred             HHHHHHHHHHhCCCC
Q 023753          262 AESYFDQAVKSAPDD  276 (277)
Q Consensus       262 Ai~~yekALeldPdD  276 (277)
                      |+.+++..|+++|+|
T Consensus        93 A~~~~~~lL~~eP~n  107 (126)
T 1nzn_A           93 ALKYVRGLLQTEPQN  107 (126)
T ss_dssp             HHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999999999999987

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.29  E-value=2.9e-06  Score=67.91  Aligned_cols=79  Identities=19%  Similarity=0.157  Sum_probs=68.5

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ---AHKDASRAE  263 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~---~~Gd~deAi  263 (277)
                      .++++|+.+|++|.+.....+.    +|.+|. .....++|+++|++|++.  .++.+++++|.+|..   ..+|+++|+
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~-~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC----LSLVSN-SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH----HHHHTC-TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh----HHHHHH-cCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            5789999999999998855444    888776 678899999999999987  789999999999876   257999999


Q ss_pred             HHHHHHHHh
Q 023753          264 SYFDQAVKS  272 (277)
Q Consensus       264 ~~yekALel  272 (277)
                      .+|++|.+.
T Consensus        82 ~~~~~Aa~~   90 (138)
T 1klx_A           82 QYYSKACGL   90 (138)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHcC
Confidence            999999876

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.28  E-value=6.9e-06  Score=77.39  Aligned_cols=81  Identities=15%  Similarity=0.171  Sum_probs=46.5

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH-----  256 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~----~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~-----  256 (277)
                      .+++++|+.+|+++++.  .++.+++++|.++. .    .+++++|+.+|++|++.  .++.+++.+|.++.. .     
T Consensus       236 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~-~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~-~~~g~~  309 (490)
T 2xm6_A          236 TQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILE-QGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDK-GAEGVA  309 (490)
T ss_dssp             CCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHH-HTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHH-CBTTBC
T ss_pred             CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCc
Confidence            34555666666665543  34555566665554 4    45666666666666543  455566666666655 4     


Q ss_pred             CCHHHHHHHHHHHHHh
Q 023753          257 KDASRAESYFDQAVKS  272 (277)
Q Consensus       257 Gd~deAi~~yekALel  272 (277)
                      +++++|+.+|++|++.
T Consensus       310 ~~~~~A~~~~~~a~~~  325 (490)
T 2xm6_A          310 KNREQAISWYTKSAEQ  325 (490)
T ss_dssp             CCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            5666666666666554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.23  E-value=1.9e-06  Score=84.28  Aligned_cols=91  Identities=10%  Similarity=0.078  Sum_probs=76.3

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH--
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEA-----NPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILA-----NPSDGNI--  244 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALel-----dP~n~---~al~nLA~lL~e~~Gd~eeA~e~~ekALel-----dP~n~~a--  244 (277)
                      ..+|..+|++++|+.+|+++|++     -|++|   ..++|+|.+|. .+|++++|+.+|++|+++     -|+.|.+  
T Consensus       358 a~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~-~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  436 (490)
T 3n71_A          358 SEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNW-HAGHIEVGHGMICKAYAILLVTHGPSHPITKD  436 (490)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence            35566789999999999999987     46665   56899999997 899999999999999986     5666654  


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          245 -LSLYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       245 -l~~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                       +.+++.++.+ ++.+++|+..|.+|.+.
T Consensus       437 ~~~~l~~~~~e-~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          437 LEAMRMQTEME-LRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence             5678888888 89999999999998764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.08  E-value=8.6e-06  Score=68.76  Aligned_cols=72  Identities=8%  Similarity=-0.049  Sum_probs=60.7

Q ss_pred             HHHHHHhCC---CcHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753          179 NNNYSNNNH---GSSSTDAYYEKMIEAN-P-GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (277)
Q Consensus       179 Y~~m~e~~G---d~deAi~~yekALeld-P-~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l  251 (277)
                      |...+....   ++++++..|+..++.+ | ++..++|++|..++ +.++|++|.+|++++++++|+|..+....-.+
T Consensus        38 ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~-kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           38 YAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALKYVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            334444444   6779999999999999 7 67899999999997 89999999999999999999999988765443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.94  E-value=1.6e-05  Score=72.08  Aligned_cols=88  Identities=14%  Similarity=0.086  Sum_probs=74.7

Q ss_pred             hCCCcHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHH
Q 023753          185 NNHGSSSTDAYYEKMIEANPG------NALLLGNYARFLKEVRGDFAKAEELCGRAILA------NPSDGNILSLYADLI  252 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP~------n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel------dP~n~~al~~LA~ll  252 (277)
                      ..+++++|+.+|++++...+.      -..++.++|.++. ..|+|++|+.++++++..      .+....++..++.+|
T Consensus       107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (434)
T 4b4t_Q          107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY-QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVY  185 (434)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH-HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence            457889999999999887433      2578889999887 799999999999999886      344577899999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCC
Q 023753          253 WQAHKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       253 ~~~~Gd~deAi~~yekALeldP  274 (277)
                      .. .+++++|+.+|++++.+.+
T Consensus       186 ~~-~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          186 HK-LRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HH-hCcHHHHHHHHHHHHHHhh
Confidence            99 9999999999999998754

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.94  E-value=2.6e-05  Score=72.53  Aligned_cols=83  Identities=19%  Similarity=0.151  Sum_probs=71.4

Q ss_pred             CCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILA----------NPSDGNILSLYADLIWQ  254 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~--n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel----------dP~n~~al~~LA~ll~~  254 (277)
                      +++.+|...|+++.+..|+  .+..+++   ++ +..|++++|+..++++++.          +|+|+.++.++..+.+.
T Consensus       192 ~~~q~A~~~f~El~~~~p~~~~~~lLln---~~-~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~  267 (310)
T 3mv2_B          192 ETATSNFYYYEELSQTFPTWKTQLGLLN---LH-LQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALM  267 (310)
T ss_dssp             STTTHHHHHHHHHHTTSCSHHHHHHHHH---HH-HHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCcccHHHHHH---HH-HHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHH
Confidence            4899999999999988887  3445555   44 3789999999999988876          59999999999888888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC
Q 023753          255 AHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       255 ~~Gd~deAi~~yekALeldPdD  276 (277)
                       .|+  +|.++++++.+.+|++
T Consensus       268 -lgk--~a~~l~~qL~~~~P~h  286 (310)
T 3mv2_B          268 -QGL--DTEDLTNQLVKLDHEH  286 (310)
T ss_dssp             -TTC--TTHHHHHHHHHTTCCC
T ss_pred             -hCh--HHHHHHHHHHHhCCCC
Confidence             887  9999999999999987

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.89  E-value=4.1e-05  Score=71.25  Aligned_cols=97  Identities=9%  Similarity=0.004  Sum_probs=78.3

Q ss_pred             hhHHHHHHhCCCcHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHH-HHHHH
Q 023753          177 GSNNNYSNNNHGSSSTDAYYEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-----DGN-ILSLY  248 (277)
Q Consensus       177 ~yY~~m~e~~Gd~deAi~~yekALeldP--~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~-----n~~-al~~L  248 (277)
                      .+...++...|++++|+..|.+.|..+|  ++..++..++.++. ..++.+.|.+.++++.+.+|+     +.. +...-
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L-~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Lae  182 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL-LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAE  182 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCccccccchHHHHHHHH
Confidence            4556778888999999999999999997  78888888888886 899999999999999999993     333 33333


Q ss_pred             HHHHHHHcC--CHHHHHHHHHHHHHhCCC
Q 023753          249 ADLIWQAHK--DASRAESYFDQAVKSAPD  275 (277)
Q Consensus       249 A~ll~~~~G--d~deAi~~yekALeldPd  275 (277)
                      |++.+. .|  ++++|..+|+++.+..|+
T Consensus       183 a~v~l~-~g~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          183 SYIKFA-TNKETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             HHHHHH-HTCSTTTHHHHHHHHHHTTSCS
T ss_pred             HHHHHH-hCCccHHHHHHHHHHHHHhCCC
Confidence            555665 56  899999999998887774

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.87  E-value=1.9e-05  Score=73.37  Aligned_cols=88  Identities=15%  Similarity=0.091  Sum_probs=67.5

Q ss_pred             chhhHHHHHHh-----CCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHH
Q 023753          175 FSGSNNNYSNN-----NHGSSSTDAYYEKMIEANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-GNILSL  247 (277)
Q Consensus       175 ~~~yY~~m~e~-----~Gd~deAi~~yekALeldP~n-~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n-~~al~~  247 (277)
                      ...+++.+|..     -|+.++|.++|++||+++|+. ..+++.||.+|....+++++|.+++++|+..+|+. |.  ..
T Consensus       201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~--~~  278 (301)
T 3u64_A          201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH--NK  278 (301)
T ss_dssp             HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS--CH
T ss_pred             HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC--hh
Confidence            34566677776     389999999999999999975 99999999998734699999999999999999873 43  23


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHH
Q 023753          248 YADLIWQAHKDASRAESYFDQA  269 (277)
Q Consensus       248 LA~ll~~~~Gd~deAi~~yekA  269 (277)
                      +++...+     ++|..+++++
T Consensus       279 lan~~~q-----~eA~~LL~~~  295 (301)
T 3u64_A          279 LLVILSQ-----KRARWLKAHV  295 (301)
T ss_dssp             HHHHHHH-----HHHHHHHHTH
T ss_pred             HHHHHHH-----HHHHHHHHHh
Confidence            4444433     5565555544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.82  E-value=7.9e-05  Score=75.71  Aligned_cols=81  Identities=6%  Similarity=-0.050  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023753          190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAE-ELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQ  268 (277)
Q Consensus       190 deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~-e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yek  268 (277)
                      +.....|++||...|.++.+|+.||.++. ..++.++|. ..|++|+...|.+...+..++.+... .+++++|...|++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~-~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~-~~~~e~aR~iyek  403 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQG-EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL-NTKIPEIETTILS  403 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence            34678999999999999999999999886 788889997 99999999999999999999999988 9999999999999


Q ss_pred             HHHh
Q 023753          269 AVKS  272 (277)
Q Consensus       269 ALel  272 (277)
                      ++..
T Consensus       404 ~l~~  407 (679)
T 4e6h_A          404 CIDR  407 (679)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9975

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.77  E-value=8.7e-05  Score=81.28  Aligned_cols=82  Identities=12%  Similarity=0.059  Sum_probs=68.5

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 023753          182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR  261 (277)
Q Consensus       182 m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de  261 (277)
                      +++..+++++|+++++++     +++.+|++||.++. ..|++++|+.+|.+|     +|+.++...+.++.+ .|++++
T Consensus      1085 Lie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql-~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~-lGkyEE 1152 (1630)
T 1xi4_A         1085 LIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQL-QKGMVKEAIDSYIKA-----DDPSSYMEVVQAANT-SGNWEE 1152 (1630)
T ss_pred             HHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHH-hCCCHHHHHHHHHhc-----CChHHHHHHHHHHHH-cCCHHH
Confidence            333445555555555544     77999999999886 899999999999887     899999999999999 999999


Q ss_pred             HHHHHHHHHHhCCC
Q 023753          262 AESYFDQAVKSAPD  275 (277)
Q Consensus       262 Ai~~yekALeldPd  275 (277)
                      |+++|..|++..++
T Consensus      1153 AIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1153 LVKYLQMARKKARE 1166 (1630)
T ss_pred             HHHHHHHHHhhccc
Confidence            99999999988754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.75  E-value=6.2e-05  Score=68.16  Aligned_cols=94  Identities=15%  Similarity=0.061  Sum_probs=76.8

Q ss_pred             hhHHHHHHhCCCcHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC----HH
Q 023753          177 GSNNNYSNNNHGSSSTDAYYEKMIEA------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP---SD----GN  243 (277)
Q Consensus       177 ~yY~~m~e~~Gd~deAi~~yekALel------dP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP---~n----~~  243 (277)
                      .....++...|++++|+.++++++..      .+....++.+++.++. ..+++++|..+|++|+.+.+   ..    ..
T Consensus       139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  217 (434)
T 4b4t_Q          139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH-KLRNLAKSKASLTAARTAANSIYCPTQTVAE  217 (434)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence            34567888889999999999999886      3334678999999887 89999999999999998753   22    34


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          244 ILSLYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       244 al~~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                      ++..+|.++.. .+++++|..+|.++++.
T Consensus       218 ~~~~~g~~~~~-~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          218 LDLMSGILHCE-DKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHHHHHHHTTS-SSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHhHHHHHHHHHHHHHH
Confidence            56667777777 89999999999999865

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.66  E-value=0.00048  Score=57.70  Aligned_cols=71  Identities=14%  Similarity=0.018  Sum_probs=62.6

Q ss_pred             CCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          204 PGNALLLGNYARFLKEVRG---DFAKAEELCGRAILANP-SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       204 P~n~~al~nLA~lL~e~~G---d~eeA~e~~ekALeldP-~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      .-.+.+.++||++|. ...   +..+++..++..+..+| ...+.++.+|..+++ .++|++|+.+.+..|+++|+|
T Consensus        36 ~vs~~t~F~YAw~Lv-~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk-l~~Y~~Ar~y~d~lL~~eP~n  110 (144)
T 1y8m_A           36 TATIQSRFNYAWGLI-KSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNN  110 (144)
T ss_dssp             TSCHHHHHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTCCCC
T ss_pred             CCcHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcCCCc
Confidence            567899999999986 444   45689999999999999 467789999999999 999999999999999999987

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.64  E-value=0.00021  Score=72.62  Aligned_cols=88  Identities=9%  Similarity=0.021  Sum_probs=60.6

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYADLIWQAHKDASRAE  263 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~---n~~al~~LA~ll~~~~Gd~deAi  263 (277)
                      ++.+.|...|+++|+..|+++..|..|+.++. ..++.+.|...|++|+...|+   ...+|..+..+-.. .|+.+.+.
T Consensus       484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~-~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~-~G~~~~~~  561 (679)
T 4e6h_A          484 KDTKTACKVLELGLKYFATDGEYINKYLDFLI-YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK-VGSLNSVR  561 (679)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH-TCCSHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-cCCHHHHH
Confidence            34677777777777777777777777777664 567777777777777777662   44556566665555 67777777


Q ss_pred             HHHHHHHHhCCCC
Q 023753          264 SYFDQAVKSAPDD  276 (277)
Q Consensus       264 ~~yekALeldPdD  276 (277)
                      ..++++++..|++
T Consensus       562 ~v~~R~~~~~P~~  574 (679)
T 4e6h_A          562 TLEKRFFEKFPEV  574 (679)
T ss_dssp             HHHHHHHHHSTTC
T ss_pred             HHHHHHHHhCCCC
Confidence            7777777777764

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.63  E-value=0.00029  Score=59.93  Aligned_cols=96  Identities=15%  Similarity=0.085  Sum_probs=81.7

Q ss_pred             hHHHHHHhCCCc------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 023753          178 SNNNYSNNNHGS------SSTDAYYEKMIEANPGN--------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN  243 (277)
Q Consensus       178 yY~~m~e~~Gd~------deAi~~yekALeldP~n--------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~  243 (277)
                      -|-.+++..|+.      ++-+..|++|+..-|-.        ...|..||.+.  ..+|.++|.+.|+.|+.+....+.
T Consensus        18 ~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~--ei~D~d~aR~vy~~a~~~hKkFAK   95 (161)
T 4h7y_A           18 SLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK--AIQEPDDARDYFQMARANCKKFAF   95 (161)
T ss_dssp             HHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH--HHHCGGGCHHHHHHHHHHCTTBHH
T ss_pred             HHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHhHHHHH
Confidence            345666666887      88899999999987753        46788888653  468999999999999999888999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       244 al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +|..+|.+-.. +++.+.|.+.+.+|+.+.|..
T Consensus        96 iwi~~AqFEiR-qgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           96 VHISFAQFELS-QGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCBC
T ss_pred             HHHHHHHHHHH-cccHHHHHHHHHHHhccCCCc
Confidence            99999999999 999999999999999998853

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.62  E-value=0.00018  Score=66.02  Aligned_cols=72  Identities=8%  Similarity=-0.009  Sum_probs=61.7

Q ss_pred             hhhHHHHHHhCCCcHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023753          176 SGSNNNYSNNNHGSSSTDAYYEKMIEAN--PG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA  249 (277)
Q Consensus       176 ~~yY~~m~e~~Gd~deAi~~yekALeld--P~-n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA  249 (277)
                      ..+.+.++...|++++|+.+|++++...  |. .+.+++++|.++. ..|+.++|..+|++++..+|+ +.+...|.
T Consensus       174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~-~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARR-SQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            3455678888899999999999999655  66 6679999999997 899999999999999999999 87776654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.55  E-value=0.00025  Score=58.77  Aligned_cols=83  Identities=13%  Similarity=-0.035  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023753          191 STDAYYEKMIEANPGNALLLGNYARFLKEVRG---DFAKAEELCGRAILANPS-DGNILSLYADLIWQAHKDASRAESYF  266 (277)
Q Consensus       191 eAi~~yekALeldP~n~~al~nLA~lL~e~~G---d~eeA~e~~ekALeldP~-n~~al~~LA~ll~~~~Gd~deAi~~y  266 (277)
                      ...+-|.+-+ ...-.+.+.++||++|. ...   +..+++..++..++.+|. ..+.++.+|..+++ .|+|++|+.+.
T Consensus        25 ~l~~qy~~E~-~~~vs~qt~F~yAw~Lv-~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk-lgdY~~Ar~y~  101 (134)
T 3o48_A           25 ILRQQVVSEG-GPTATIQSRFNYAWGLI-KSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYV  101 (134)
T ss_dssp             HHHHHHHHTT-GGGSCHHHHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             HHHHHHHHHh-CCCCChhhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH-hhhHHHHHHHH
Confidence            3444444433 23336789999999886 444   456899999999999984 57889999999999 99999999999


Q ss_pred             HHHHHhCCCC
Q 023753          267 DQAVKSAPDD  276 (277)
Q Consensus       267 ekALeldPdD  276 (277)
                      +.+|++.|+|
T Consensus       102 d~lL~~eP~N  111 (134)
T 3o48_A          102 DTLFEHERNN  111 (134)
T ss_dssp             HHHHTTCTTC
T ss_pred             HHHHhhCCCC
Confidence            9999999987

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.41  E-value=0.00063  Score=74.66  Aligned_cols=85  Identities=8%  Similarity=0.009  Sum_probs=69.0

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD----------------  241 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n----------------  241 (277)
                      .|++++...|++++|+.+|.+|     +|+.++.+.+.++. ..|++++|+++|+.|.+.+++.                
T Consensus      1110 qLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~-~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A         1110 QLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAAN-TSGNWEELVKYLQMARKKARESYVETELIFALAKTNRL 1183 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCH
Confidence            4558888889999999999886     88999999999886 8999999999999888666431                


Q ss_pred             -----------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023753          242 -----------GNILSLYADLIWQAHKDASRAESYFDQA  269 (277)
Q Consensus       242 -----------~~al~~LA~ll~~~~Gd~deAi~~yekA  269 (277)
                                 ...+..+|..+.. .|+|++|+.+|.+|
T Consensus      1184 eele~fI~~~n~ad~~~iGd~le~-eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A         1184 AELEEFINGPNNAHIQQVGDRCYD-EKMYDAAKLLYNNV 1221 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHh-cCCHHHHHHHHHhh
Confidence                       2234567777777 88888888888876

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.37  E-value=0.00048  Score=65.67  Aligned_cols=60  Identities=10%  Similarity=0.031  Sum_probs=53.0

Q ss_pred             HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023753          183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI  244 (277)
Q Consensus       183 ~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a  244 (277)
                      +...|++++|+.++++|++++| +..+|..+|.++. ..|++++|+++|++|+.++|..+..
T Consensus       287 ~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~-~~G~~~eA~e~~~~AlrL~P~~~t~  346 (372)
T 3ly7_A          287 ALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYE-MKGMNREAADAYLTAFNLRPGANTL  346 (372)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCcChH
Confidence            3346999999999999999997 4778888999886 8999999999999999999988743

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.34  E-value=0.00052  Score=66.03  Aligned_cols=67  Identities=13%  Similarity=0.003  Sum_probs=55.5

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEA-----NPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILA-----NPSDGNIL  245 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALel-----dP~n~---~al~nLA~lL~e~~Gd~eeA~e~~ekALel-----dP~n~~al  245 (277)
                      ...+|..+|+|++|+.+|+++|++     -|+++   ..++|+|.+|. .+|++++|+.+|++|+++     -|+.|.+.
T Consensus       346 La~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~-~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          346 AMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYM-GLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            345666789999999999999987     45555   56899999997 899999999999999987     57777665


Q ss_pred             H
Q 023753          246 S  246 (277)
Q Consensus       246 ~  246 (277)
                      .
T Consensus       425 ~  425 (433)
T 3qww_A          425 E  425 (433)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.29  E-value=0.0011  Score=56.67  Aligned_cols=86  Identities=14%  Similarity=0.003  Sum_probs=68.9

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC--------
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNAL---------LLGNYARFLKEVRGDFAKAEELCGRAILAN---PS--------  240 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~---------al~nLA~lL~e~~Gd~eeA~e~~ekALeld---P~--------  240 (277)
                      +.+...+.|+.|+.....++.+..+++.         +++.+|.+++ ..++|.+|+.+|++||.+.   +.        
T Consensus        28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf-~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~  106 (167)
T 3ffl_A           28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLF-HDKEYRNAVSKYTMALQQKKALSKTSKVRPST  106 (167)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence            3444568999999999998777544443         7888999998 7999999999999997652   11        


Q ss_pred             --------------CHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023753          241 --------------DGNILSLYADLIWQAHKDASRAESYFDQ  268 (277)
Q Consensus       241 --------------n~~al~~LA~ll~~~~Gd~deAi~~yek  268 (277)
                                    +.++.+.+|.|+.. .+++++|+..++.
T Consensus       107 ~~~ss~p~s~~~~~e~Elkykia~C~~~-l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          107 GNSASTPQSQCLPSEIEVKYKLAECYTV-LKQDKDAIAILDG  147 (167)
T ss_dssp             ----------CCCCHHHHHHHHHHHHHH-TTCHHHHHHHHHT
T ss_pred             cccCCCcccccccchHHHHHHHHHHHHH-HCCHHHHHHHHhc
Confidence                          12678889999999 9999999998875

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.22  E-value=0.00042  Score=66.33  Aligned_cols=65  Identities=12%  Similarity=0.001  Sum_probs=53.7

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEA-----NPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILA-----NPSDGNILS  246 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALel-----dP~n~---~al~nLA~lL~e~~Gd~eeA~e~~ekALel-----dP~n~~al~  246 (277)
                      .+|..+|++++|+.+|+++|++     -|++|   ..++++|.+|. .+|++++|+.+|++|+++     -|+.|.+..
T Consensus       337 ~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~-~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  414 (429)
T 3qwp_A          337 DACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQL-HQGMFPQAMKNLRLAFDIMRVTHGREHSLIED  414 (429)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            4556679999999999999976     36665   56889999997 899999999999999987     577776543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.02  E-value=0.0017  Score=53.03  Aligned_cols=63  Identities=10%  Similarity=-0.012  Sum_probs=53.7

Q ss_pred             CcHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753          188 GSSSTDAYYEKMIEAN-P-GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (277)
Q Consensus       188 d~deAi~~yekALeld-P-~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l  251 (277)
                      +..+++..++..+..+ | ..-..++.+|..++ +.|+|++|..+++.+|+++|+|..|......+
T Consensus        53 d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y-klg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           53 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3446999999999887 5 56788999999888 89999999999999999999999987765443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.89  E-value=0.0041  Score=60.14  Aligned_cols=89  Identities=12%  Similarity=0.128  Sum_probs=68.1

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd  258 (277)
                      |.......++.+.|...|++| +..+....+|..+|.+-+...++.+.|...|+++++..|+++..+..++.+... .++
T Consensus       292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~-~~~  369 (493)
T 2uy1_A          292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR-IGD  369 (493)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCC
Confidence            334444567789999999999 433335667777776655344579999999999999999999888888887777 888


Q ss_pred             HHHHHHHHHHH
Q 023753          259 ASRAESYFDQA  269 (277)
Q Consensus       259 ~deAi~~yekA  269 (277)
                      .+.|...|+++
T Consensus       370 ~~~aR~l~er~  380 (493)
T 2uy1_A          370 EENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHHH
Confidence            88888888876

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.87  E-value=0.0061  Score=58.93  Aligned_cols=59  Identities=15%  Similarity=0.067  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023753          190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (277)
Q Consensus       190 deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~  250 (277)
                      +.+...|++||...|.++.+|..|+.++. ..++.++|...|++|+.. |.+...+..++.
T Consensus       196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~-~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~  254 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYAEEVYFFYSEYLI-GIGQKEKAKKVVERGIEM-SDGMFLSLYYGL  254 (493)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH-CCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhC-CCcHHHHHHHHh
Confidence            45678999999999999999999999886 789999999999999999 988765555444

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.78  E-value=0.0057  Score=59.63  Aligned_cols=79  Identities=8%  Similarity=-0.096  Sum_probs=44.8

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY  265 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~  265 (277)
                      .|++++|++.|++|     +++.+|.....++. ..++++.|..+..+ |..   +|+-+..+..+|.. .|++++|+.+
T Consensus       161 Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv-~~~ef~lA~~~~l~-L~~---~ad~l~~lv~~Yek-~G~~eEai~l  229 (449)
T 1b89_A          161 LGEYQAAVDGARKA-----NSTRTWKEVCFACV-DGKEFRLAQMCGLH-IVV---HADELEELINYYQD-RGYFEELITM  229 (449)
T ss_dssp             TTCHHHHHHHHHHH-----TCHHHHHHHHHHHH-HTTCHHHHHHTTTT-TTT---CHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             hccHHHHHHHHHHc-----CCchhHHHHHHHHH-HcCcHHHHHHHHHH-HHh---CHhhHHHHHHHHHH-CCCHHHHHHH
Confidence            34455555555554     24444444444443 34455555444443 112   22333345566766 8999999999


Q ss_pred             HHHHHHhCCC
Q 023753          266 FDQAVKSAPD  275 (277)
Q Consensus       266 yekALeldPd  275 (277)
                      |++++.+++.
T Consensus       230 Le~aL~le~a  239 (449)
T 1b89_A          230 LEAALGLERA  239 (449)
T ss_dssp             HHHHTTSTTC
T ss_pred             HHHHhCCcHH
Confidence            9999988864

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.66  E-value=0.005  Score=50.90  Aligned_cols=64  Identities=6%  Similarity=-0.023  Sum_probs=55.5

Q ss_pred             CCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n-~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l  251 (277)
                      .+..+++..++..++.+|.. -..++.+|..++ +.|+|++|..+++++++++|+|..|......+
T Consensus        57 ~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~y-klgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           57 NDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            35568999999999999954 688999998888 89999999999999999999999987765544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.65  E-value=0.0073  Score=50.50  Aligned_cols=64  Identities=6%  Similarity=-0.023  Sum_probs=55.2

Q ss_pred             CCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~-n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l  251 (277)
                      .+..+++..++..+..+|. .-..++.+|..++ +.++|.+|..|++.+++++|+|.++......+
T Consensus        56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~y-kl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A           56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  120 (144)
T ss_dssp             HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            4556899999999999995 4678889998888 89999999999999999999999987655443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.62  E-value=0.024  Score=51.98  Aligned_cols=90  Identities=19%  Similarity=0.151  Sum_probs=75.0

Q ss_pred             HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--------------
Q 023753          184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA--------------  249 (277)
Q Consensus       184 e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA--------------  249 (277)
                      ...+++++|++.++..|+.+|.|+.....|..+|. ..|++++|...++.+.+++|........|-              
T Consensus         8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLc-v~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~vfa   86 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ   86 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHc
Confidence            34689999999999999999999999999999998 799999999999999999998755433321              


Q ss_pred             ---------------------HHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          250 ---------------------DLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       250 ---------------------~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                                           ..... .|+.++|...-.+|++..|.
T Consensus        87 G~~~P~~~g~~~~w~~~ll~Al~~~~-~G~~~~A~~lr~~A~e~ap~  132 (273)
T 1zbp_A           87 GAATAKVLGENEELTKSLVSFNLSMV-SQDYEQVSELALQIEELRQE  132 (273)
T ss_dssp             SCCCEECCCSCHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHhcCcc
Confidence                                 22222 58899999999999988875

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.46  E-value=0.0015  Score=63.61  Aligned_cols=72  Identities=13%  Similarity=0.041  Sum_probs=58.8

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 023753          182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR  261 (277)
Q Consensus       182 m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de  261 (277)
                      .+...|.+++|..+|.++        ..|..+|.+|. ..|+|++|+++|++|     +++.+|.....++.. .++++.
T Consensus       131 ~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~-~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~-~~ef~l  195 (449)
T 1b89_A          131 RCYDEKMYDAAKLLYNNV--------SNFGRLASTLV-HLGEYQAAVDGARKA-----NSTRTWKEVCFACVD-GKEFRL  195 (449)
T ss_dssp             ------CTTTHHHHHHHT--------TCHHHHHHHHH-TTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHh--------hhHHHHHHHHH-HhccHHHHHHHHHHc-----CCchhHHHHHHHHHH-cCcHHH
Confidence            344569999999999988        46788999997 899999999999999     588999999999999 999999


Q ss_pred             HHHHHHH
Q 023753          262 AESYFDQ  268 (277)
Q Consensus       262 Ai~~yek  268 (277)
                      |..+..+
T Consensus       196 A~~~~l~  202 (449)
T 1b89_A          196 AQMCGLH  202 (449)
T ss_dssp             HHHTTTT
T ss_pred             HHHHHHH
Confidence            9866553

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.10  E-value=0.036  Score=52.03  Aligned_cols=84  Identities=7%  Similarity=-0.024  Sum_probs=67.8

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCH--------H--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 023753          186 NHGSSSTDAYYEKMIEANPGNA--------L--------------LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN  243 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~--------~--------------al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~  243 (277)
                      .++.+.|...|++|+.+-...+        +              ++..++..+. ..|++.+|+..+++++..+|-+-.
T Consensus       128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l-~~g~~~~a~~~l~~~~~~~P~~E~  206 (388)
T 2ff4_A          128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-ACGRASAVIAELEALTFEHPYREP  206 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH
Confidence            4788899999999999853321        1              2223334343 679999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753          244 ILSLYADLIWQAHKDASRAESYFDQAVK  271 (277)
Q Consensus       244 al~~LA~ll~~~~Gd~deAi~~yekALe  271 (277)
                      ++..+-.+|+. .|+..+|+..|+++.+
T Consensus       207 ~~~~lm~al~~-~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          207 LWTQLITAYYL-SDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence            99999999998 9999999999998754

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.90  E-value=0.022  Score=58.73  Aligned_cols=58  Identities=17%  Similarity=0.094  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023753          209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQ  268 (277)
Q Consensus       209 al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yek  268 (277)
                      .+..-+.+|. .+++|+-|+++.++|+...|.+...|+.||.+|.. ++||+.|+-.+.-
T Consensus       339 LL~~Qa~FLl-~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~-l~d~e~ALLtLNS  396 (754)
T 4gns_B          339 LLNIQTNFLL-NRGDYELALGVSNTSTELALDSFESWYNLARCHIK-KEEYEKALFAINS  396 (754)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHh-ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH-hccHHHHHHHHhc
Confidence            4555577776 78999999999999999999999999999999999 9999999976654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.84  E-value=0.027  Score=55.30  Aligned_cols=76  Identities=13%  Similarity=0.134  Sum_probs=64.3

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~  254 (277)
                      +.+.+..-...+..|..+|++|+.++|++...++.+|.+.. ..++.-+|+-||-|++....-.+.+..++..++-.
T Consensus       157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~-~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS-SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH-HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHh-cccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            45555555677889999999999999999999999998776 68899999999999999887788888888776654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.59  E-value=0.15  Score=49.43  Aligned_cols=89  Identities=12%  Similarity=0.055  Sum_probs=70.1

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcC
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEAN--PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-DGNILSLYADLIWQAHK  257 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeld--P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~-n~~al~~LA~ll~~~~G  257 (277)
                      .++...|++++|...|+++.+..  | |...|+.+-..|. ..|+.++|.+.|++..+..-. |...|..+-.+|.. .|
T Consensus       113 ~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~-~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~-~g  189 (501)
T 4g26_A          113 RLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFC-RKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD-TK  189 (501)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-TT
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh-CC
Confidence            44555699999999999998863  4 5666666666676 789999999999998876432 56677778888888 99


Q ss_pred             CHHHHHHHHHHHHHh
Q 023753          258 DASRAESYFDQAVKS  272 (277)
Q Consensus       258 d~deAi~~yekALel  272 (277)
                      +.++|.++|++..+.
T Consensus       190 ~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          190 NADKVYKTLQRLRDL  204 (501)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999987653

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.27  E-value=0.028  Score=48.03  Aligned_cols=62  Identities=16%  Similarity=0.181  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---------ILSLYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       209 al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~---------al~~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                      +++.-...++ ..+.|+.|+.....++.+..++++         ++..+|.+++. .++|.+|+.+|++||+.
T Consensus        22 ~l~dqik~L~-d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~-~~eyrrA~~~y~qALq~   92 (167)
T 3ffl_A           22 NVIDHVRDMA-AAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH-DKEYRNAVSKYTMALQQ   92 (167)
T ss_dssp             CHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHH
Confidence            3444444555 578999999999998777654444         78899999999 99999999999999865

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.15  E-value=0.059  Score=52.91  Aligned_cols=62  Identities=19%  Similarity=0.191  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       209 al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                      .+..+|.+.. ....+..|..+|.+|+.++|++...++.+|.+... .++.-+|+-+|-+++..
T Consensus       154 ~l~~LGDL~R-Y~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~-~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          154 CLVHLGDIAR-YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHHHHHHHHHHSS
T ss_pred             HHHHcccHHH-HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc-ccccHHHHHHHHHHHhc
Confidence            4567787665 67889999999999999999999999999999988 99999999999999864

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.70  E-value=0.13  Score=43.62  Aligned_cols=61  Identities=15%  Similarity=0.212  Sum_probs=55.0

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 023753          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS  246 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~  246 (277)
                      ..+|.++|...|+.|+.+....+.+|..+|.+-. .+++..+|...+.+|+.+.|...+.+.
T Consensus        72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEi-Rqgnl~kARkILg~AiG~~~k~~~~le  132 (161)
T 4h7y_A           72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFEL-SQGNVKKSKQLLQKAVERGAVPLEMLE  132 (161)
T ss_dssp             HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHhccCCCcHHHHH
Confidence            3379999999999999998889999999999886 899999999999999999999877553

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=94.37  E-value=0.3  Score=47.27  Aligned_cols=84  Identities=18%  Similarity=0.039  Sum_probs=67.8

Q ss_pred             CCcHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANP-GNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-SDGNILSLYADLIWQAHKDASRAES  264 (277)
Q Consensus       187 Gd~deAi~~yekALeldP-~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP-~n~~al~~LA~ll~~~~Gd~deAi~  264 (277)
                      +++++|...|+++.+..- -|...+..+...|. +.|++++|++.|++..+..- -|...|..+-..|.. .|+.++|.+
T Consensus        84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~-~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~-~g~~~~A~~  161 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV-AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR-KGDADKAYE  161 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH-CCCHHHHHH
Confidence            457899999999988642 26677777777786 79999999999999887642 266677777777888 999999999


Q ss_pred             HHHHHHHh
Q 023753          265 YFDQAVKS  272 (277)
Q Consensus       265 ~yekALel  272 (277)
                      +|++..+.
T Consensus       162 l~~~M~~~  169 (501)
T 4g26_A          162 VDAHMVES  169 (501)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99998764

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.13  E-value=0.11  Score=47.42  Aligned_cols=55  Identities=31%  Similarity=0.425  Sum_probs=52.6

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       220 ~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                      ..+++++|++.+...|+.+|.|+.....|..+|.- .|++++|.+.++.+.+++|+
T Consensus         9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv-~G~w~RA~~QL~~~a~l~p~   63 (273)
T 1zbp_A            9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPE   63 (273)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGG
T ss_pred             hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCch
Confidence            57999999999999999999999999999999988 99999999999999999996

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.99  E-value=0.21  Score=48.68  Aligned_cols=65  Identities=14%  Similarity=-0.003  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHH------------HcCCHHHH
Q 023753          203 NPGNALLLGNYARFLKEVRGDFAKAEELCGRA--------ILANPSDGNILSLYADLIWQ------------AHKDASRA  262 (277)
Q Consensus       203 dP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekA--------LeldP~n~~al~~LA~ll~~------------~~Gd~deA  262 (277)
                      ..+++..|.++|..+. ..++++.|+++|.++        |.....+...+..++.+...            ..|++++|
T Consensus       677 ~~~~~~~W~~la~~al-~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a  755 (814)
T 3mkq_A          677 DESAEMKWRALGDASL-QRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGA  755 (814)
T ss_dssp             TCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHH
T ss_pred             hhCcHhHHHHHHHHHH-HcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHH
Confidence            4567899999999885 899999999999986        22224444544444333322            15666666


Q ss_pred             HHHHHH
Q 023753          263 ESYFDQ  268 (277)
Q Consensus       263 i~~yek  268 (277)
                      +++|.+
T Consensus       756 ~~~~~~  761 (814)
T 3mkq_A          756 KDLLIK  761 (814)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666544

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=93.37  E-value=1.1  Score=39.19  Aligned_cols=93  Identities=12%  Similarity=-0.022  Sum_probs=65.5

Q ss_pred             chhhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hh---------------
Q 023753          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI--LA---------------  237 (277)
Q Consensus       175 ~~~yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekAL--el---------------  237 (277)
                      +...+.-++.-+|.+..|+-++-     +-+-..+.+--+.+|. ..+||.+|+.+++..+  ++               
T Consensus        35 Y~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~-klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv  108 (242)
T 3kae_A           35 YRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYK-KKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV  108 (242)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred             HHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence            34445555566677777665543     2233444444455666 8899999999999999  22               


Q ss_pred             CCCCHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753          238 NPSDGNI-LSLYADLIWQAHKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       238 dP~n~~a-l~~LA~ll~~~~Gd~deAi~~yekALeldP  274 (277)
                      ||.|.+. +..+|.++-+ .++.++|+.+|.+.....|
T Consensus       109 d~~DkEfFy~l~a~lltq-~g~r~EaI~y~~~Sf~~~~  145 (242)
T 3kae_A          109 DPGDEEFFESLLGDLCTL-SGYREEGIGHYVRSFGKSF  145 (242)
T ss_dssp             CTTCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCC
T ss_pred             ccchHHHHHHHHHHHHHH-hcCHHHhhhHhhhhcCCcc
Confidence            4566665 5567888888 9999999999999887765

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=91.86  E-value=1.9  Score=36.85  Aligned_cols=48  Identities=8%  Similarity=0.047  Sum_probs=39.7

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA  234 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekA  234 (277)
                      .+....|+++.|.+..+..     ++...|..+|.... ..++++-|+++|+++
T Consensus        13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL-~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEAL-AQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHH-HTTCHHHHHHHHHHT
T ss_pred             HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHH-HcCChHHHHHHHHHh
Confidence            3445568999999887765     67889999999775 799999999999886

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=91.09  E-value=0.41  Score=49.35  Aligned_cols=95  Identities=11%  Similarity=0.131  Sum_probs=64.5

Q ss_pred             HHHhCCC-cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--------CCCC----------
Q 023753          182 YSNNNHG-SSSTDAYYEKMIEANPGNALLLGNYARFLKEVR-GDFAKAEELCGRAILA--------NPSD----------  241 (277)
Q Consensus       182 m~e~~Gd-~deAi~~yekALeldP~n~~al~nLA~lL~e~~-Gd~eeA~e~~ekALel--------dP~n----------  241 (277)
                      ++...++ ++.|+.++++..+.+|.+...+........+.. .+--+|++.+.++++.        .+.+          
T Consensus       257 ~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~  336 (754)
T 4gns_B          257 FIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCM  336 (754)
T ss_dssp             HHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred             HHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcc
Confidence            3334555 578999999999999987644332111111112 2345788888887742        3333          


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Q 023753          242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW  277 (277)
Q Consensus       242 ~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD~  277 (277)
                      ...+..-+.++.. +++|+-|+++-++|+.+.|.+|
T Consensus       337 ~~LL~~Qa~FLl~-K~~~elAL~~Ak~AV~~aPseF  371 (754)
T 4gns_B          337 SDLLNIQTNFLLN-RGDYELALGVSNTSTELALDSF  371 (754)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSCH
T ss_pred             hHHHHHHHHHHhc-cCcHHHHHHHHHHHHhcCchhh
Confidence            2345556888888 9999999999999999999875

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.00  E-value=0.66  Score=43.31  Aligned_cols=53  Identities=13%  Similarity=-0.042  Sum_probs=47.4

Q ss_pred             HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753          183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL  236 (277)
Q Consensus       183 ~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALe  236 (277)
                      +...|++++|+..+++++..+|-+-.+|..+-.+|+ ..|+..+|++.|+++-.
T Consensus       181 ~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~-~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          181 EIACGRASAVIAELEALTFEHPYREPLWTQLITAYY-LSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence            335799999999999999999999999999988887 89999999999998654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.80  E-value=1.1  Score=42.37  Aligned_cols=93  Identities=10%  Similarity=-0.012  Sum_probs=67.8

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCC--C-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----HHHH
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPG--N-ALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PSDGNI----LSLY  248 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~--n-~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld--P~n~~a----l~~L  248 (277)
                      -++..+...|++++|.++|.++...-..  + ..++.....++. ..+|+..|..++.+|-.+-  ..++..    ....
T Consensus       136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l-~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~  214 (429)
T 4b4t_R          136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGF-FYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY  214 (429)
T ss_dssp             HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence            3556677789999999999999876433  2 456666666665 6899999999999987652  223332    3344


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          249 ADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       249 A~ll~~~~Gd~deAi~~yekALel  272 (277)
                      |.+++. .++|.+|..+|-.++.-
T Consensus       215 gl~~l~-~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          215 GIHCLA-VRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHGGGG-TSCHHHHHHHHHHHHHH
T ss_pred             HHHHHH-hChHHHHHHHHHHHhcc
Confidence            555666 89999999999887654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=90.30  E-value=1.8  Score=41.23  Aligned_cols=93  Identities=12%  Similarity=-0.028  Sum_probs=65.9

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHh--CCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHH----
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEA--NPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILAN---PSDGNI----  244 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALel--dP~n----~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld---P~n~~a----  244 (277)
                      -...+|...++|.+|...+.+.++-  ..++    .+++..-..++. ..+++.+|..+|.+|....   +.+|..    
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~-~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i  182 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYH-ALSNLPKARAALTSARTTANAIYCPPKVQGAL  182 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            3456778899999999999988873  1122    234555556676 7899999999999997664   233433    


Q ss_pred             HHHHHHHHH-HHcCCHHHHHHHHHHHHHh
Q 023753          245 LSLYADLIW-QAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       245 l~~LA~ll~-~~~Gd~deAi~~yekALel  272 (277)
                      ...-|.++. . .++|++|..+|-.+++.
T Consensus       183 ~~~~Gi~~l~~-~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          183 DLQSGILHAAD-ERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHh-ccCHHHHHHHHHHHHhc
Confidence            223355555 5 89999999999988743

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.17  E-value=3.1  Score=39.60  Aligned_cols=94  Identities=9%  Similarity=0.148  Sum_probs=68.4

Q ss_pred             hhHHHHHHhCCCcHHHHHHHHHHHHh-C-CCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHH----
Q 023753          177 GSNNNYSNNNHGSSSTDAYYEKMIEA-N-PGN----ALLLGNYARFLKEVRGDFAKAEELCGRAIL---ANPSDGN----  243 (277)
Q Consensus       177 ~yY~~m~e~~Gd~deAi~~yekALel-d-P~n----~~al~nLA~lL~e~~Gd~eeA~e~~ekALe---ldP~n~~----  243 (277)
                      ..+..+++..|++.+|...+.....- . ..+    ..++.....++. ..+|+.+|..++.++-.   -.+.++.    
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l-~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~  219 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI-LKGDYSQATVLSRKILKKTFKNPKYESLKLE  219 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence            34568888999999999999887532 1 122    345666667676 68999999999999742   3444443    


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          244 ILSLYADLIWQAHKDASRAESYFDQAVKS  272 (277)
Q Consensus       244 al~~LA~ll~~~~Gd~deAi~~yekALel  272 (277)
                      ++...|.++.. .++|.+|-.+|..++..
T Consensus       220 ~~~~~~~~~~~-e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          220 YYNLLVKISLH-KREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHH-HCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-hhhHHHHHHHHHHHHhc
Confidence            45556777777 89999999999988753

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=88.19  E-value=3.3  Score=36.78  Aligned_cols=60  Identities=8%  Similarity=-0.052  Sum_probs=47.2

Q ss_pred             hHHHHHHh-CCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753          178 SNNNYSNN-NHGSSSTDAYYEKMIEA-----NPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILA  237 (277)
Q Consensus       178 yY~~m~e~-~Gd~deAi~~yekALel-----dP~n~---~al~nLA~lL~e~~Gd~eeA~e~~ekALel  237 (277)
                      ||+-+.+- .|+.+.|...|+.|+++     .|.+|   ....|++.+|++..++.++|....++|+.+
T Consensus       129 YyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~  197 (227)
T 2o8p_A          129 ISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI  197 (227)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            56655554 36788999999999874     45554   567788999999999999999999999774

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=87.23  E-value=2.5  Score=36.06  Aligned_cols=55  Identities=15%  Similarity=0.088  Sum_probs=47.0

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023753          205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA  269 (277)
Q Consensus       205 ~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekA  269 (277)
                      .|+...+.+|.    ..|+++.|.+..+++     ++...|..+|...+. +++++-|+.+|+++
T Consensus         6 ~D~~~rF~LAL----~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~-~gn~~lAe~cy~~~   60 (177)
T 3mkq_B            6 QDPHIRFDLAL----EYGNLDAALDEAKKL-----NDSITWERLIQEALA-QGNASLAEMIYQTQ   60 (177)
T ss_dssp             SCHHHHHHHHH----HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHH-TTCHHHHHHHHHHT
T ss_pred             CChHHHHHHHH----hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHH-cCChHHHHHHHHHh
Confidence            46677777763    579999999998765     788899999999999 99999999999885

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=86.64  E-value=1.9  Score=41.94  Aligned_cols=43  Identities=21%  Similarity=0.129  Sum_probs=35.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023753          221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA  269 (277)
Q Consensus       221 ~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekA  269 (277)
                      .+++++|.++++     ..+++..|..+|..+.+ .++++.|+.+|.++
T Consensus       665 ~~~~~~A~~~~~-----~~~~~~~W~~la~~al~-~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          665 VGQLTLARDLLT-----DESAEMKWRALGDASLQ-RFNFKLAIEAFTNA  707 (814)
T ss_dssp             HTCHHHHHHHHT-----TCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHH-----hhCcHhHHHHHHHHHHH-cCCHHHHHHHHHHc
Confidence            566666666543     34688999999999999 99999999999986

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.18  E-value=1.2  Score=44.01  Aligned_cols=66  Identities=20%  Similarity=0.277  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n-------~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +..++.+-+.|. ..+.|+.|..+..++.  .|..       ..+++++|.++.. +.+|.+|.++|..|+...|.+
T Consensus       231 a~l~nllLRnYL-~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~-q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          231 AMLINLILRDFL-NNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAI-QLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHHH-HSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTSSCSCS
T ss_pred             HHHHHHHHHHHH-ccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCcc
Confidence            344555556564 7899999999999995  4432       4567788999988 999999999999999988754

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=85.09  E-value=9  Score=41.23  Aligned_cols=87  Identities=9%  Similarity=-0.090  Sum_probs=67.2

Q ss_pred             HHHhCCCcHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Q 023753          182 YSNNNHGSSSTDAYYEKMIE-----ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PSDGNILSLYADLIWQ  254 (277)
Q Consensus       182 m~e~~Gd~deAi~~yekALe-----ldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld--P~n~~al~~LA~ll~~  254 (277)
                      .+-..|+.++|...|+++.+     ..| |...|+.+-..|. +.|++++|.+.|++..+..  | |...|..+-.++..
T Consensus       136 glcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glc-k~G~~~eA~~Lf~eM~~~G~~P-DvvTYntLI~glcK  212 (1134)
T 3spa_A          136 CCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWA-RQGAFKELVYVLFMVKDAGLTP-DLLSYAAALQCMGR  212 (1134)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHh
Confidence            34446999999999987653     345 5677777777777 7999999999999998754  4 56667777777777


Q ss_pred             HcCC-HHHHHHHHHHHHHh
Q 023753          255 AHKD-ASRAESYFDQAVKS  272 (277)
Q Consensus       255 ~~Gd-~deAi~~yekALel  272 (277)
                       .|+ .++|.++|++..+.
T Consensus       213 -~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          213 -QDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             -HTCCHHHHHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHc
Confidence             676 57899999988764

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=83.89  E-value=5.7  Score=34.60  Aligned_cols=77  Identities=9%  Similarity=0.096  Sum_probs=57.4

Q ss_pred             HHHHHHHHh---------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHH
Q 023753          194 AYYEKMIEA---------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PSDGNILSLYADLIWQAHKDASRA  262 (277)
Q Consensus       194 ~~yekALel---------dP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld--P~n~~al~~LA~ll~~~~Gd~deA  262 (277)
                      ..++++++.         ||....+|..|+.++  ...+...+.+.|.-.....  -..+..|..+|.++.. .|++++|
T Consensus        58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~--~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~A  134 (202)
T 3esl_A           58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF--LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLEN-AQFFLEA  134 (202)
T ss_dssp             HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh--cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH-cCCHHHH
Confidence            567777774         333345666666643  1455778888888877755  4678888889998888 9999999


Q ss_pred             HHHHHHHHHhC
Q 023753          263 ESYFDQAVKSA  273 (277)
Q Consensus       263 i~~yekALeld  273 (277)
                      .+.|+.+|+..
T Consensus       135 ~~Vy~~GI~~~  145 (202)
T 3esl_A          135 KVLLELGAENN  145 (202)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHcC
Confidence            99999999864

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=83.20  E-value=22  Score=31.02  Aligned_cols=69  Identities=10%  Similarity=0.023  Sum_probs=51.0

Q ss_pred             CCcchhhHHHHHH-hCCCcHHHHHHHHHHHH--h---------------CCCCHHH-HHHHHHHHHHHcCCHHHHHHHHH
Q 023753          172 GSGFSGSNNNYSN-NNHGSSSTDAYYEKMIE--A---------------NPGNALL-LGNYARFLKEVRGDFAKAEELCG  232 (277)
Q Consensus       172 ~~~~~~yY~~m~e-~~Gd~deAi~~yekALe--l---------------dP~n~~a-l~nLA~lL~e~~Gd~eeA~e~~e  232 (277)
                      +.++..||..+.. ...++.+|+..+++.|+  +               ||.+-+. +..+|.++. +.++.++|+.+|.
T Consensus        60 NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~llt-q~g~r~EaI~y~~  138 (242)
T 3kae_A           60 NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCT-LSGYREEGIGHYV  138 (242)
T ss_dssp             CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHH-HhcCHHHhhhHhh
Confidence            3455667775543 45899999999999992  2               3555544 556787776 8999999999999


Q ss_pred             HHHHhCCCC
Q 023753          233 RAILANPSD  241 (277)
Q Consensus       233 kALeldP~n  241 (277)
                      ......|-.
T Consensus       139 ~Sf~~~~lf  147 (242)
T 3kae_A          139 RSFGKSFLF  147 (242)
T ss_dssp             HHHHHCCCH
T ss_pred             hhcCCcccc
Confidence            888776643

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=81.73  E-value=6.2  Score=35.14  Aligned_cols=47  Identities=21%  Similarity=0.309  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753          190 SSTDAYYEKMIE-----ANPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAIL  236 (277)
Q Consensus       190 deAi~~yekALe-----ldP~n~~---al~nLA~lL~e~~Gd~eeA~e~~ekALe  236 (277)
                      +.|...|++|++     +.|.+|.   ...|++.+|++..++.++|....++|+.
T Consensus       150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd  204 (236)
T 3iqu_A          150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD  204 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            467888888865     5788874   4557888888888999998887777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	277
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-09
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	4e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	1e-04
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	4e-04

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 54.3 bits (130), Expect = 2e-09
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 1/84 (1%)

Query: 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253
               + I+A+P +A L  ++   L    GDF +A+E   ++I   P      S    L+ 
Sbjct: 17  ELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQLRHLVK 75

Query: 254 QAHKDASRAESYFDQAVKSAPDDW 277
            A      A+      V    ++ 
Sbjct: 76  AAQARKDFAQGAATAKVLGENEEL 99

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW 277
            G   +A EL   AI A+P D ++ S + +L      D  RA+    Q++K  P+  
Sbjct: 9   EGQLQQALELLIEAIKASPKDASLRSSFIEL-LCIDGDFERADEQLMQSIKLFPEYL 64

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW 277
            GDF  AE  C +     P +  +L L +  I    +   R+  +   A+K  P   
Sbjct: 12  AGDFEAAERHCMQLWRQEPDNTGVLLLLS-SIHFQCRRLDRSAHFSTLAIKQNPLLA 67

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 34/116 (29%)

Query: 194 AYYEKMIEANPGNALLLGNYARFLKEV--------------------------------- 220
             Y + IE  P       N A  LKE                                  
Sbjct: 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317

Query: 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276
           +G+  +A  L  +A+   P      S  A  + Q       A  ++ +A++ +P  
Sbjct: 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLAS-VLQQQGKLQEALMHYKEAIRISPTF 372

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 7e-05
 Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 1/63 (1%)

Query: 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253
            +  ++    P N  +L   +    +      ++      AI  NP      S   ++  
Sbjct: 20  RHCMQLWRQEPDNTGVLLLLSSIHFQ-CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78

Query: 254 QAH 256
           +  
Sbjct: 79  ERG 81

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253
             Y K +E  P  A    N A  L++ +G   +A      AI  +P+  +  S   + + 
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384

Query: 254 Q 254
           +
Sbjct: 385 E 385

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 3/85 (3%)

Query: 195 YYEKMIEANPGNALLLGNYARFLKEV--RGDFAKAEELCGRAILANPSDGNILSLYA-DL 251
            ++    A   +      YA  L       D  K   L    +     +     ++   +
Sbjct: 21  KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80

Query: 252 IWQAHKDASRAESYFDQAVKSAPDD 276
                K+  +A  Y    +++ P +
Sbjct: 81  GNYRLKEYEKALKYVRGLLQTEPQN 105

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 11/84 (13%), Positives = 26/84 (30%)

Query: 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253
           + Y +++     +  L+                   +  +A     +  ++    A + +
Sbjct: 120 SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY 179

Query: 254 QAHKDASRAESYFDQAVKSAPDDW 277
              KD S A   F+  +K   D  
Sbjct: 180 YCSKDKSVAFKIFELGLKKYGDIP 203

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	277
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.7
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.69
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.66
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.62
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.57
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.55
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.53
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.53
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.5
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.46
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.45
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.45
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.42
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.42
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.42
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.4
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.4
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.37
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.33
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.25
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.22
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.1
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.08
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.07
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.07
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.06
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.06
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.01
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.0
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.0
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.95
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.9
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.88
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.84
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.82
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.8
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.77
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.74
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.7
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.66
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.66
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.63
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.59
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.49
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.47
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.44
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.24
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.21
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.12
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.08
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.88
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.81
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.79
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.64
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	87.42
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	87.01
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	83.61
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	83.16
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	82.52
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	82.26

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.3e-16  Score=124.24  Aligned_cols=94  Identities=19%  Similarity=0.210  Sum_probs=90.1

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ..+...|++++|+.+|+++|+++|+++.+|.++|.++. ..+++++|+.+|++|++++|+++.+|+++|.++.. +++++
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~-~~~~~   88 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LNRFE   88 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhccccccc-ccccccccchhhhhHHHhccchhhHHHHHHHHHHH-ccCHH
Confidence            45667899999999999999999999999999999997 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.+|++|++++|++
T Consensus        89 ~A~~~~~~a~~~~p~~  104 (117)
T d1elwa_          89 EAKRTYEEGLKHEANN  104 (117)
T ss_dssp             HHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            9999999999999987

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=4.6e-17  Score=132.91  Aligned_cols=95  Identities=17%  Similarity=0.084  Sum_probs=90.2

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      +..+...|++++|+.+|++||+++|+++.+|+++|.+|. ..+++++|+.+|++||.++|+++.+|+++|.+|.. ++++
T Consensus        11 Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~-~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~-l~~~   88 (201)
T d2c2la1          11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESY   88 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHh-hhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCH
Confidence            456677899999999999999999999999999999997 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+.+|++|++++|++
T Consensus        89 ~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          89 DEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCccc
Confidence            99999999999998864

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.4e-16  Score=124.99  Aligned_cols=94  Identities=21%  Similarity=0.120  Sum_probs=90.0

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ..+...++|++|+.+|++|++++|+++.+|+++|.++. ..+++++|+.+|++||+++|+++.++..+|.++.. +|+++
T Consensus        18 n~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~-~g~~~   95 (159)
T d1a17a_          18 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFR   95 (159)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHH-hccccchHHHHHHHHHHHcccchHHHHHHHHHHHH-cCCHH
Confidence            45667899999999999999999999999999999997 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.+|+++++++|++
T Consensus        96 eA~~~~~~a~~~~p~~  111 (159)
T d1a17a_          96 AALRDYETVVKVKPHD  111 (159)
T ss_dssp             HHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHcCCCC
Confidence            9999999999999987

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=2.6e-15  Score=126.29  Aligned_cols=95  Identities=11%  Similarity=0.097  Sum_probs=91.1

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      +.+|...|++++|+.+|++||+++|+++.+|+++|.++. ..|++++|+.+|++|++++|+++.++.++|.+++. +|++
T Consensus        44 G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~  121 (259)
T d1xnfa_          44 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRD  121 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHH-HHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH-HhhH
Confidence            467778899999999999999999999999999999997 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+.+|+++++++|++
T Consensus       122 ~~A~~~~~~al~~~p~~  138 (259)
T d1xnfa_         122 KLAQDDLLAFYQDDPND  138 (259)
T ss_dssp             HHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhhcccc
Confidence            99999999999999986

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.57  E-value=1.1e-14  Score=112.41  Aligned_cols=89  Identities=10%  Similarity=-0.040  Sum_probs=84.6

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      +..+...|++++|+.+|+++++++|+++.+|.++|.++. ..+++++|+.+|++|++++|+++.++..+|.+|.. .|++
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~-~g~~  100 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNA  100 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhh-hhhhHHHhhcccccccccccccccchHHHHHHHHH-CCCH
Confidence            355667899999999999999999999999999999986 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHH
Q 023753          260 SRAESYFDQAV  270 (277)
Q Consensus       260 deAi~~yekAL  270 (277)
                      ++|+++|+++|
T Consensus       101 ~~A~~~l~~~l  111 (112)
T d1hxia_         101 NAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999986

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.2e-15  Score=118.69  Aligned_cols=91  Identities=13%  Similarity=0.093  Sum_probs=82.1

Q ss_pred             HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCC
Q 023753          184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV---RGDFAKAEELCGRAILANPSD--GNILSLYADLIWQAHKD  258 (277)
Q Consensus       184 e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~---~Gd~eeA~e~~ekALeldP~n--~~al~~LA~ll~~~~Gd  258 (277)
                      ...+++++|++.|++||+++|+++.++++||.+|. .   .+++++|+.+|++++..+|.+  +.+++++|.+|+. .|+
T Consensus        10 ~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~-~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~-~g~   87 (122)
T d1nzna_          10 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLV-RTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKE   87 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHT-TSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTC
T ss_pred             cCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH-Hhh
Confidence            34578999999999999999999999999999885 4   346678999999999999866  4589999999999 999


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 023753          259 ASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       259 ~deAi~~yekALeldPdD  276 (277)
                      +++|+.+|+++|+++|++
T Consensus        88 ~~~A~~~~~~aL~~~P~~  105 (122)
T d1nzna_          88 YEKALKYVRGLLQTEPQN  105 (122)
T ss_dssp             HHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHhCcCC
Confidence            999999999999999987

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.53  E-value=8.6e-15  Score=118.49  Aligned_cols=91  Identities=20%  Similarity=0.191  Sum_probs=81.3

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 023753          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE---------VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e---------~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~  255 (277)
                      ..+.+++|+..|++|++++|+|+.+++++|.+|..         ..+.+++|+.+|++||+++|+++.+++++|.+|.. 
T Consensus         9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~-   87 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS-   87 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH-
Confidence            44668999999999999999999999999998862         23567899999999999999999999999999976 


Q ss_pred             cC-----------CHHHHHHHHHHHHHhCCCC
Q 023753          256 HK-----------DASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       256 ~G-----------d~deAi~~yekALeldPdD  276 (277)
                      ++           ++++|+++|++|++++|++
T Consensus        88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~  119 (145)
T d1zu2a1          88 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  119 (145)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             cccchhhHHHHHHhHHHhhhhhhcccccCCCH
Confidence            54           4789999999999999986

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.9e-14  Score=122.72  Aligned_cols=95  Identities=13%  Similarity=0.016  Sum_probs=90.6

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ..++...+++++|+.+|+++++.+|+++.+|+++|.++. ..|++++|+++|++|++++|+++.+++++|.++.. .|++
T Consensus       179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~  256 (323)
T d1fcha_         179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGAH  256 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCH
T ss_pred             HHHHHHHHHHhhhhcccccccccccccccchhhhhhccc-ccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH-CCCH
Confidence            456777899999999999999999999999999999987 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 023753          260 SRAESYFDQAVKSAPDD  276 (277)
Q Consensus       260 deAi~~yekALeldPdD  276 (277)
                      ++|+.+|++||+++|++
T Consensus       257 ~~A~~~~~~al~l~p~~  273 (323)
T d1fcha_         257 REAVEHFLEALNMQRKS  273 (323)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCcC
Confidence            99999999999999976

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=9.2e-14  Score=114.41  Aligned_cols=94  Identities=16%  Similarity=0.099  Sum_probs=86.3

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNA---------------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNIL  245 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~---------------~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al  245 (277)
                      ..+...+++++|+.+|++||++.|...               .++.++|.+|. ..+++++|+.++++||+++|+++.++
T Consensus        21 ~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~-k~~~~~~A~~~~~~al~~~p~~~~a~   99 (170)
T d1p5qa1          21 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKGL   99 (170)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHH-hhhhcccccchhhhhhhccccchhhh
Confidence            456667999999999999999988652               46778999887 89999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          246 SLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       246 ~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +.+|.+++. +|++++|+.+|++|++++|+|
T Consensus       100 ~~~g~~~~~-~g~~~~A~~~~~~al~l~P~n  129 (170)
T d1p5qa1         100 SRRGEAHLA-VNDFELARADFQKVLQLYPNN  129 (170)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHH-hhhHHHHHHHHHHHHHhCCCC
Confidence            999999999 999999999999999999987

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6e-14  Score=110.46  Aligned_cols=93  Identities=18%  Similarity=0.311  Sum_probs=83.7

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN-------ILSLYADLIW  253 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~-------al~~LA~ll~  253 (277)
                      ..+...++|++|+.+|++||+++|+++.+++++|.+|. ..+++++|+++|++||+++|+++.       ++..+|.++.
T Consensus        12 ~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~   90 (128)
T d1elra_          12 NDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF   90 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHH-HcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence            45666899999999999999999999999999999997 899999999999999999998754       5566777777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCC
Q 023753          254 QAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       254 ~~~Gd~deAi~~yekALeldPd  275 (277)
                      . .+++++|+.+|++++..+|+
T Consensus        91 ~-~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          91 K-EEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             H-TTCHHHHHHHHHHHHHHCCC
T ss_pred             H-hCCHHHHHHHHHHHHhcCCC
Confidence            7 89999999999999998775

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.46  E-value=1.7e-13  Score=111.66  Aligned_cols=94  Identities=20%  Similarity=0.144  Sum_probs=86.5

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEA----------------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI  244 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALel----------------dP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a  244 (277)
                      ..+...+++.+|+..|++||++                +|.+..++.++|.++. ..+++++|+.+|++||+++|+++.+
T Consensus        35 ~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~Ai~~~~~al~~~p~~~~a  113 (169)
T d1ihga1          35 NTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTKA  113 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHH-hhcccchhhhhhhhhhhhhhhhhhH
Confidence            4555679999999999999864                5677788999999887 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       245 l~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      |+++|.++.. ++++++|+..|++|++++|+|
T Consensus       114 ~~~~g~~~~~-l~~~~~A~~~~~~al~l~p~n  144 (169)
T d1ihga1         114 LYRRAQGWQG-LKEYDQALADLKKAQEIAPED  144 (169)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHhHHHHHHH-ccCHHHHHHHHHHHHHhCCCC
Confidence            9999999999 999999999999999999987

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.45  E-value=5e-13  Score=108.11  Aligned_cols=94  Identities=12%  Similarity=0.033  Sum_probs=85.0

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNA----------------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI  244 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~----------------~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a  244 (277)
                      ..+...++|.+|+..|++||..-+...                .++.|+|.+|. ..+++++|+.+|++||+++|++..+
T Consensus        25 ~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-~l~~~~~Al~~~~~al~~~p~~~ka  103 (153)
T d2fbna1          25 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVKA  103 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHH-Hhcccchhhhhhhccccccchhhhh
Confidence            344567999999999999999766432                36788999987 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       245 l~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ++.+|.++.. +|++++|+.+|++|++++|+|
T Consensus       104 ~~~~g~~~~~-lg~~~~A~~~~~~al~l~P~n  134 (153)
T d2fbna1         104 LYKLGVANMY-FGFLEEAKENLYKAASLNPNN  134 (153)
T ss_dssp             HHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTC
T ss_pred             hHHhHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999 999999999999999999987

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.7e-13  Score=121.41  Aligned_cols=98  Identities=13%  Similarity=0.104  Sum_probs=89.6

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G  257 (277)
                      +++.++...+.+++|+++|++||+++|++..+|++.|.++....+++++|+.+|++|++++|++..+|.++|.++.. ++
T Consensus        48 ~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~-l~  126 (315)
T d2h6fa1          48 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LR  126 (315)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh-hc
Confidence            56677888899999999999999999999999999999886333469999999999999999999999999999998 99


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 023753          258 DASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       258 d~deAi~~yekALeldPdD  276 (277)
                      ++++|+.+|++|++++|++
T Consensus       127 ~~~eAl~~~~kal~~dp~n  145 (315)
T d2h6fa1         127 DPSQELEFIADILNQDAKN  145 (315)
T ss_dssp             CCTTHHHHHHHHHHHCTTC
T ss_pred             cHHHHHHHHhhhhhhhhcc
Confidence            9999999999999999987

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.8e-13  Score=112.96  Aligned_cols=94  Identities=13%  Similarity=0.097  Sum_probs=88.3

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ..+...|++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+.+|++|++++|+++.++..+|.++.. +|+++
T Consensus         7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~-~g~~~   84 (388)
T d1w3ba_           7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF-QCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE-RGQLQ   84 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhh-hcccc
Confidence            34445699999999999999999999999999999997 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.++.++++.+|.+
T Consensus        85 ~A~~~~~~~~~~~~~~  100 (388)
T d1w3ba_          85 EAIEHYRHALRLKPDF  100 (388)
T ss_dssp             HHHHHHHHHHHHCTTC
T ss_pred             cccccccccccccccc
Confidence            9999999999998864

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1e-12  Score=113.65  Aligned_cols=94  Identities=10%  Similarity=0.002  Sum_probs=89.3

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ..+...|++++|+.+|+++|+.+|+++.+|+++|.++. ..+++++|+.+|++|++++|+++.++..+|.++.. .++++
T Consensus        27 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~  104 (323)
T d1fcha_          27 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQELLAISALRRCLELKPDNQTALMALAVSFTN-ESLQR  104 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHhhhccccccccccccccccccc-ccccc
Confidence            45667899999999999999999999999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.+|++++.++|++
T Consensus       105 ~A~~~~~~~~~~~~~~  120 (323)
T d1fcha_         105 QACEILRDWLRYTPAY  120 (323)
T ss_dssp             HHHHHHHHHHHTSTTT
T ss_pred             ccccchhhHHHhccch
Confidence            9999999999999874

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=9.1e-13  Score=110.50  Aligned_cols=91  Identities=10%  Similarity=0.037  Sum_probs=82.8

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ..+...+++++|+..|++   +.|.++.+|+++|.++. ..|++++|+++|++||+++|+++.+++++|.++.. +|+++
T Consensus        13 ~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~-~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~-~g~~~   87 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYD   87 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh-hccHH
Confidence            344567999999999986   46778999999999997 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+..|++|+...|.+
T Consensus        88 ~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          88 LAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHhCccC
Confidence            9999999999887654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5e-13  Score=114.53  Aligned_cols=93  Identities=18%  Similarity=0.225  Sum_probs=65.5

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 023753          182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR  261 (277)
Q Consensus       182 m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de  261 (277)
                      ++...+++++|+.+|++++...|.++.++..++.++. ..|++++|+.+|++|++++|+++.++.++|.++.. .|++++
T Consensus       280 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~  357 (388)
T d1w3ba_         280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR-EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-QGKLQE  357 (388)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT-TTCCHH
T ss_pred             HHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHH
Confidence            3333445555555555555555555555555555554 56778888888888888888888888888888887 888888


Q ss_pred             HHHHHHHHHHhCCCC
Q 023753          262 AESYFDQAVKSAPDD  276 (277)
Q Consensus       262 Ai~~yekALeldPdD  276 (277)
                      |+.+|++|++++|++
T Consensus       358 A~~~~~~al~l~P~~  372 (388)
T d1w3ba_         358 ALMHYKEAIRISPTF  372 (388)
T ss_dssp             HHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHhCCCC
Confidence            888888888888875

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.40  E-value=1.4e-12  Score=106.61  Aligned_cols=94  Identities=14%  Similarity=0.118  Sum_probs=84.5

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGN---------------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNIL  245 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n---------------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al  245 (277)
                      ..+...+++.+|+.+|++||...|..               ..++.|+|.+|. ..+++++|+.+|++|+.++|++..++
T Consensus        23 ~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-~l~~~~~Ai~~~~~al~l~p~~~~a~  101 (168)
T d1kt1a1          23 TVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKGL  101 (168)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHH-HhhhcccchhhhhhhhhcccchHHHH
Confidence            45566799999999999999865442               245778999987 89999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          246 SLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       246 ~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +++|.++.. +|++++|+..|++|++++|++
T Consensus       102 ~~~~~~~~~-l~~~~~A~~~~~~al~l~P~n  131 (168)
T d1kt1a1         102 YRRGEAQLL-MNEFESAKGDFEKVLEVNPQN  131 (168)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Confidence            999999999 999999999999999999987

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.6e-12  Score=106.73  Aligned_cols=95  Identities=9%  Similarity=0.023  Sum_probs=86.8

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------H
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD----------------G  242 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n----------------~  242 (277)
                      .+..+...|++++|+.+|++||++||+++.+|+++|.++. ..|++++|+.+|++|+...|.+                .
T Consensus        42 lG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~-~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~  120 (192)
T d1hh8a_          42 IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFAC  120 (192)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHH
T ss_pred             HHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH-hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchH
Confidence            3466777899999999999999999999999999999997 8999999999999999986654                4


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       243 ~al~~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                      .+++++|.++.. .+++++|++.|++|+++.|+
T Consensus       121 e~~~n~a~~~~~-~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_         121 EVLYNIAFMYAK-KEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCC
Confidence            778999999999 99999999999999999886

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.1e-12  Score=115.60  Aligned_cols=93  Identities=14%  Similarity=0.093  Sum_probs=84.5

Q ss_pred             HHHhCC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753          182 YSNNNH-GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (277)
Q Consensus       182 m~e~~G-d~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d  260 (277)
                      ++...+ ++++|+.+|+++++++|++..+|+++|.++. ..+++++|+++|++|++++|++..+|.++|.++.. .++++
T Consensus        86 ~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~-~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~-~~~~~  163 (315)
T d2h6fa1          86 LLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FKLWD  163 (315)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCT
T ss_pred             HHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH-hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHH-HHhhH
Confidence            445544 5899999999999999999999999999886 78999999999999999999999999999999998 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 023753          261 RAESYFDQAVKSAPDD  276 (277)
Q Consensus       261 eAi~~yekALeldPdD  276 (277)
                      +|+.+|++||+++|++
T Consensus       164 ~Al~~~~~al~~~p~n  179 (315)
T d2h6fa1         164 NELQYVDQLLKEDVRN  179 (315)
T ss_dssp             THHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHCCcc
Confidence            9999999999999986

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=1.2e-11  Score=103.53  Aligned_cols=89  Identities=17%  Similarity=0.104  Sum_probs=80.1

Q ss_pred             CCcHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 023753          187 HGSSSTDAYYEKMIEAN----PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA  262 (277)
Q Consensus       187 Gd~deAi~~yekALeld----P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deA  262 (277)
                      .+.+.|+..+++++...    +..+.+++++|.+|. ..|++++|+.+|++||.++|+++.+++++|.++.. +|++++|
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~-~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~-~g~~~~A   90 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAA   90 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHH-HHHHHHh
Confidence            45678888899998754    345679999999997 89999999999999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHhCCCCC
Q 023753          263 ESYFDQAVKSAPDDW  277 (277)
Q Consensus       263 i~~yekALeldPdD~  277 (277)
                      +.+|++|++++|++.
T Consensus        91 ~~~~~~al~~~p~~~  105 (259)
T d1xnfa_          91 YEAFDSVLELDPTYN  105 (259)
T ss_dssp             HHHHHHHHHHCTTCT
T ss_pred             hhhhhHHHHHHhhhh
Confidence            999999999999863

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.22  E-value=7.5e-12  Score=100.81  Aligned_cols=93  Identities=13%  Similarity=-0.026  Sum_probs=80.6

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGN------------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--------  240 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n------------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~--------  240 (277)
                      ..+...|+|++|+..|++||+++|++            +.+|.++|.+|. ..|++++|+.+|++|+.+.|.        
T Consensus        17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~-~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHH-HcCccchhhHhhhhhhhcccccccccccc
Confidence            34555699999999999999999875            367899999997 899999999999999987542        


Q ss_pred             ---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753          241 ---DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       241 ---n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPd  275 (277)
                         ...+++++|.+|.. +|++++|+.+|++|+++.|.
T Consensus        96 ~~~~~~a~~~~g~~~~~-lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          96 GKLWISAVYSRALALDG-LGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhhHH
Confidence               24478899999999 99999999999999999764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=1.5e-10  Score=93.42  Aligned_cols=69  Identities=20%  Similarity=0.127  Sum_probs=65.3

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       206 n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ++..+...|..++ ..|+|++|+.+|++||+++|+++.+|.++|.+|.. .+++++|+.+|++||+++|++
T Consensus         3 ~a~~l~~~Gn~~~-~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~-~~~~~~Ai~~~~~al~l~p~~   71 (201)
T d2c2la1           3 SAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQS   71 (201)
T ss_dssp             CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTC
T ss_pred             hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh-hhhhhhhhHHHHHHHHhCCCc
Confidence            4566788999998 89999999999999999999999999999999999 999999999999999999986

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.2e-10  Score=85.69  Aligned_cols=74  Identities=12%  Similarity=0.111  Sum_probs=65.5

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGN-------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n-------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll  252 (277)
                      +..+...+++.+|+.+|++|+++.|.+       +.++.++|.++. ..|++++|+.+|++||+++|+++.++.+++.+.
T Consensus        12 G~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~-~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~   90 (95)
T d1tjca_          12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNLKYFE   90 (95)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHH-hcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            356667899999999999999997654       678999999997 899999999999999999999999999998765


Q ss_pred             HH
Q 023753          253 WQ  254 (277)
Q Consensus       253 ~~  254 (277)
                      ..
T Consensus        91 ~~   92 (95)
T d1tjca_          91 YI   92 (95)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.07  E-value=3.3e-10  Score=91.69  Aligned_cols=81  Identities=14%  Similarity=0.020  Sum_probs=72.2

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ...+...+++++|+.+|++||+++|+++.+|+++|.++. ..+++++|+.+|++|++++|+|..++..++.+... ....
T Consensus        84 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~-~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~-l~~~  161 (169)
T d1ihga1          84 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK-IKAQ  161 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHH
Confidence            355667899999999999999999999999999999997 89999999999999999999999999999988766 4444


Q ss_pred             HHH
Q 023753          260 SRA  262 (277)
Q Consensus       260 deA  262 (277)
                      .++
T Consensus       162 ~~~  164 (169)
T d1ihga1         162 KDK  164 (169)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=7.8e-10  Score=88.41  Aligned_cols=89  Identities=13%  Similarity=-0.052  Sum_probs=75.5

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-Hc
Q 023753          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ-AH  256 (277)
Q Consensus       178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~-~~  256 (277)
                      .++..+...+++++|+..|++||+++|+++.+|.++|.++. ..|++++|+.+|++++.++|+++.++..++.+... ..
T Consensus        49 ~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~-~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_          49 NRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            34467778899999999999999999999999999999997 89999999999999999999999999888776432 14


Q ss_pred             CCHHHHHHHHH
Q 023753          257 KDASRAESYFD  267 (277)
Q Consensus       257 Gd~deAi~~ye  267 (277)
                      +.+++|+...+
T Consensus       128 ~~~~~a~~~~~  138 (159)
T d1a17a_         128 KAFERAIAGDE  138 (159)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhCcH
Confidence            55667765433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=7.2e-10  Score=90.55  Aligned_cols=80  Identities=13%  Similarity=0.001  Sum_probs=71.6

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~  259 (277)
                      ...+...+++++|+.+|++||+++|+++.+++++|.++. ..|++++|+.+|++|++++|+|+.+...++.+... ..+.
T Consensus        69 a~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~-~~~~  146 (170)
T d1p5qa1          69 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL-AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR-IRRQ  146 (170)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHH-HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHH
Confidence            345667899999999999999999999999999999997 89999999999999999999999999999998766 4444


Q ss_pred             HH
Q 023753          260 SR  261 (277)
Q Consensus       260 de  261 (277)
                      .+
T Consensus       147 ~~  148 (170)
T d1p5qa1         147 LA  148 (170)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.4e-10  Score=84.61  Aligned_cols=68  Identities=13%  Similarity=0.123  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n-------~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +.-.+++|.+++ ..|+|.+|+.+|++|+++.|.+       +.++.++|.+++. .|++++|+.+|++||+++|++
T Consensus         5 addc~~lG~~~~-~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~-~g~~~~A~~~y~~aL~l~P~~   79 (95)
T d1tjca_           5 AEDSFELGKVAY-TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEH   79 (95)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh-cCChHHHHHHHHHHHHhCcCC
Confidence            556789999998 8999999999999999997654       6789999999999 999999999999999999986

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=7.2e-10  Score=85.23  Aligned_cols=73  Identities=8%  Similarity=0.016  Sum_probs=67.4

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023753          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (277)
Q Consensus       179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll  252 (277)
                      .+.++...+++++|+..|+++++++|+++.+|+++|.++. ..+++++|+.+|++|++++|+++.++..++.+.
T Consensus        43 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          43 RSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE-FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             ccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            3466777899999999999999999999999999999997 899999999999999999999999999988764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.01  E-value=8.8e-10  Score=84.25  Aligned_cols=66  Identities=11%  Similarity=-0.045  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       209 al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      .++++|..+. ..|++++|+.+|++|++++|+++.++..+|.++.. .+++++|+.+|++|++++|++
T Consensus        18 ~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~   83 (112)
T d1hxia_          18 NPMEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKD   83 (112)
T ss_dssp             CHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHH-HHhhhHHHHHHHhhhcccccccchhhhhhhhhhhh-hhhHHHhhccccccccccccc
Confidence            3577888886 89999999999999999999999999999999999 999999999999999999986

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.00  E-value=1.3e-09  Score=88.50  Aligned_cols=89  Identities=11%  Similarity=0.026  Sum_probs=75.8

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH-
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA-  259 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~-  259 (277)
                      ..+...+++++|+.+|+++|+++|++..+++++|.++. ..+++++|+.+|++|+.++|+++.++..++.+... ...+ 
T Consensus        72 ~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~-~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~-~~~~~  149 (168)
T d1kt1a1          72 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL-LMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK-AKEHN  149 (168)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHhHH
Confidence            44566899999999999999999999999999999997 89999999999999999999999999999988766 4433 


Q ss_pred             HHHHHHHHHHHH
Q 023753          260 SRAESYFDQAVK  271 (277)
Q Consensus       260 deAi~~yekALe  271 (277)
                      +.....|.+.++
T Consensus       150 e~~kk~~~~~f~  161 (168)
T d1kt1a1         150 ERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            344555555444

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=5.1e-10  Score=87.40  Aligned_cols=68  Identities=15%  Similarity=0.205  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +..+-++|..++ ..++|++|+.+|++||+++|+++.++.++|.+|.. ++++++|+.+|++||+++|++
T Consensus         4 a~~~k~~G~~~~-~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~~~~   71 (128)
T d1elra_           4 ALKEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGREN   71 (128)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHH-cCchHHHHHHHHHHHHhCccc
Confidence            345668999887 79999999999999999999999999999999999 999999999999999998865

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.95  E-value=1.4e-09  Score=87.32  Aligned_cols=74  Identities=18%  Similarity=0.083  Sum_probs=68.1

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~  254 (277)
                      ...+...+++++|+.+|++||+++|.+..+|+++|.++. ..|++++|+.+|++|++++|+|+.+...+..+...
T Consensus        74 a~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~-~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k  147 (153)
T d2fbna1          74 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM-YFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  147 (153)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            345567899999999999999999999999999999997 89999999999999999999999999998887655

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.90  E-value=6e-09  Score=92.09  Aligned_cols=90  Identities=19%  Similarity=0.158  Sum_probs=80.8

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------------
Q 023753          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL-------------  251 (277)
Q Consensus       185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l-------------  251 (277)
                      ..|++++|+..|+++|+.+|+|+.++.+|+.+|. ..|++++|+..|+++++++|++..++..++.+             
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~-~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~   86 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG   86 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHH
Confidence            4599999999999999999999999999999997 89999999999999999999998888777544             


Q ss_pred             ----------------------HHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          252 ----------------------IWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       252 ----------------------l~~~~Gd~deAi~~yekALeldPdD  276 (277)
                                            +.. .|++++|+..+++++++.|+.
T Consensus        87 ~~~~~~~~~p~~~~~~l~~a~~~~~-~gd~~~A~~~~~~a~e~~p~~  132 (264)
T d1zbpa1          87 AATAKVLGENEELTKSLVSFNLSMV-SQDYEQVSELALQIEELRQEK  132 (264)
T ss_dssp             CCCEECCCSCHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCCCC
T ss_pred             hhhhhcccCchHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhcCCCC
Confidence                                  223 578999999999999999875

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.88  E-value=7.3e-09  Score=86.21  Aligned_cols=88  Identities=8%  Similarity=-0.022  Sum_probs=79.1

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753          182 YSNNNHGSSSTDAYYEKMIEANPGNA----------------------LLLGNYARFLKEVRGDFAKAEELCGRAILANP  239 (277)
Q Consensus       182 m~e~~Gd~deAi~~yekALeldP~n~----------------------~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP  239 (277)
                      .....|++++|+.+|.+|+.+.+++.                      .++.+++.++. ..|++++|+.++++++.++|
T Consensus        20 ~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~-~~g~~~~Al~~~~~al~~~P   98 (179)
T d2ff4a2          20 HAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-ACGRASAVIAELEALTFEHP   98 (179)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHHhCC
Confidence            44557999999999999999987653                      46788888886 89999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753          240 SDGNILSLYADLIWQAHKDASRAESYFDQAVK  271 (277)
Q Consensus       240 ~n~~al~~LA~ll~~~~Gd~deAi~~yekALe  271 (277)
                      .+..+|..++.+|.. .|++.+|+..|+++.+
T Consensus        99 ~~e~~~~~l~~al~~-~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          99 YREPLWTQLITAYYL-SDRQSDALGAYRRVKT  129 (179)
T ss_dssp             TCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHH
Confidence            999999999999999 9999999999999844

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.3e-09  Score=103.03  Aligned_cols=89  Identities=16%  Similarity=0.049  Sum_probs=69.8

Q ss_pred             HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 023753          184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE  263 (277)
Q Consensus       184 e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi  263 (277)
                      ...+++++|+..|+++++.+|.  .++.++|.++. ..+++++|+.+|++|++++|+++.+++++|.++.. .|++.+|+
T Consensus       131 ~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~-~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~-~~~~~~A~  206 (497)
T d1ya0a1         131 NKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIAR-YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTTI  206 (497)
T ss_dssp             ------------CCHHHHHHHH--HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-cCCHHHHH
Confidence            3457888999999999988874  57788999886 78999999999999999999999999999999998 99999999


Q ss_pred             HHHHHHHHhCCCC
Q 023753          264 SYFDQAVKSAPDD  276 (277)
Q Consensus       264 ~~yekALeldPdD  276 (277)
                      .+|.+||.++|..
T Consensus       207 ~~y~ral~~~~~~  219 (497)
T d1ya0a1         207 FYYCRSIAVKFPF  219 (497)
T ss_dssp             HHHHHHHSSSBCC
T ss_pred             HHHHHHHhCCCCC
Confidence            9999999988763

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.82  E-value=2e-09  Score=86.15  Aligned_cols=68  Identities=10%  Similarity=0.061  Sum_probs=59.3

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR-----------GDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~-----------Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~  254 (277)
                      .+.+++|+.+|++||+++|+++.+|+++|.+|. ..           +++++|+++|++|++++|++..++..++.+.-.
T Consensus        54 ~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~-~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka  132 (145)
T d1zu2a1          54 KQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT-SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  132 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH-HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence            355689999999999999999999999999886 33           357999999999999999999999888876543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=3.1e-08  Score=86.60  Aligned_cols=85  Identities=13%  Similarity=0.064  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--C
Q 023753          190 SSTDAYYEKMIEANPGNALLLGNYARFLKE---------VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK--D  258 (277)
Q Consensus       190 deAi~~yekALeldP~n~~al~nLA~lL~e---------~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G--d  258 (277)
                      ++|+.+|+++|+++|+++.+|+..+.++..         ..+++++|+.+|+++++.+|+++.+++.+|.++.. .+  +
T Consensus        46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~-~~~~~  124 (334)
T d1dcea1          46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LPEPN  124 (334)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CSSCC
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH-hcccc
Confidence            455555555555555555555444433321         11124455555555555555555555555544443 32  2


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 023753          259 ASRAESYFDQAVKSAPD  275 (277)
Q Consensus       259 ~deAi~~yekALeldPd  275 (277)
                      +++|+.+++++++++|.
T Consensus       125 ~~~a~~~~~~al~~~~~  141 (334)
T d1dcea1         125 WARELELCARFLEADER  141 (334)
T ss_dssp             HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhhCch
Confidence            44555555555555544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=1.1e-08  Score=89.50  Aligned_cols=88  Identities=13%  Similarity=0.096  Sum_probs=77.2

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHcCCHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILS-LYADLIWQAHKDASRAE  263 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~G--d~eeA~e~~ekALeldP~n~~al~-~LA~ll~~~~Gd~deAi  263 (277)
                      +++++|+.+|+++++.+|+++.+|++++.++. ..+  ++++|+.+++++++++|.+..++. ..+.++.. .+++++|+
T Consensus        87 ~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~Al  164 (334)
T d1dcea1          87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA-AVAPAEEL  164 (334)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-CCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHH-HhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHh-ccccHHHH
Confidence            44678999999999999999999999998875 444  589999999999999999999875 45566666 89999999


Q ss_pred             HHHHHHHHhCCCC
Q 023753          264 SYFDQAVKSAPDD  276 (277)
Q Consensus       264 ~~yekALeldPdD  276 (277)
                      .+++++++++|++
T Consensus       165 ~~~~~~i~~~p~~  177 (334)
T d1dcea1         165 AFTDSLITRNFSN  177 (334)
T ss_dssp             HHHHTTTTTTCCC
T ss_pred             HHHHHHHHcCCCC
Confidence            9999999999987

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=2e-08  Score=87.73  Aligned_cols=98  Identities=11%  Similarity=0.061  Sum_probs=85.0

Q ss_pred             hhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 023753          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (277)
Q Consensus       177 ~yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~  256 (277)
                      ..|..+....++++.|...|++|++..|.+...+..+|.+.+...++.+.|..+|+++++.+|+++.++..++.++.. .
T Consensus       138 ~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~-~  216 (308)
T d2onda1         138 IQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-L  216 (308)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-c
Confidence            345566667788999999999999999999999988887655356889999999999999999999999999999988 9


Q ss_pred             CCHHHHHHHHHHHHHhCCC
Q 023753          257 KDASRAESYFDQAVKSAPD  275 (277)
Q Consensus       257 Gd~deAi~~yekALeldPd  275 (277)
                      |++++|+.+|++|+...|.
T Consensus       217 g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         217 NEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             CCHHHHHHHHHHHHHSSSS
T ss_pred             CChHHHHHHHHHHHHhCCC
Confidence            9999999999999997764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=2.6e-08  Score=86.43  Aligned_cols=96  Identities=17%  Similarity=0.057  Sum_probs=76.3

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS------DGNILSL  247 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~------n~~al~~  247 (277)
                      +.+|...+++++|+.+|++++++.+.+      ..++.++|.++....+++++|+++|++|+++.+.      ...++.+
T Consensus        84 g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~  163 (290)
T d1qqea_          84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK  163 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHH
Confidence            466777889999999999998886665      5677788877753458999999999999887442      2445788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          248 YADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       248 LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      +|.++.. +|+|++|+.+|++++...|.+
T Consensus       164 la~~~~~-~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         164 CADLKAL-DGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHH-cChHHHHHHHHHHHHHhCccc
Confidence            8999988 999999999999999887764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=1.7e-08  Score=87.66  Aligned_cols=93  Identities=11%  Similarity=0.015  Sum_probs=78.7

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 023753          181 NYSNNNHGSSSTDAYYEKMIEAN------PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNILSLY  248 (277)
Q Consensus       181 ~m~e~~Gd~deAi~~yekALeld------P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n------~~al~~L  248 (277)
                      .+|...+++++|+.+|++|+++.      +..+.++.++|.+|. ..+++++|+++|++|+++.+.+      ..++..+
T Consensus        45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            66677899999999999999983      223567899999997 8999999999999999987765      6678888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753          249 ADLIWQAHKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       249 A~ll~~~~Gd~deAi~~yekALeldP  274 (277)
                      |.++....+++++|+.+|++|+++.+
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            88886635999999999999998754

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=9.2e-08  Score=79.61  Aligned_cols=93  Identities=10%  Similarity=0.076  Sum_probs=79.6

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNILSLY  248 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~-----~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n------~~al~~L  248 (277)
                      ..++...|++++|+.+|+++++..|++.     .++..+|.++. ..|++++|+.+|++|+++.+..      ..++..+
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   97 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   97 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            3566678999999999999999999873     57888999887 8999999999999999986543      3457778


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753          249 ADLIWQAHKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       249 A~ll~~~~Gd~deAi~~yekALeldP  274 (277)
                      +.++.. .+++.+|+..+.+++.+.+
T Consensus        98 ~~~~~~-~~~~~~a~~~~~~al~~~~  122 (366)
T d1hz4a_          98 SEILFA-QGFLQTAWETQEKAFQLIN  122 (366)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHhH
Confidence            899988 9999999999999997643

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=5.2e-08  Score=76.19  Aligned_cols=67  Identities=9%  Similarity=-0.042  Sum_probs=59.3

Q ss_pred             CCcHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGN--ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n--~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~  254 (277)
                      +++++|+..|+++++.+|.+  +.+++++|.+|. ..|++++|+.+|++||+++|++..++..+..+.-.
T Consensus        50 ~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~-~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          50 DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            45668999999999999876  458999999997 89999999999999999999999999888876644

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=1.1e-07  Score=82.90  Aligned_cols=99  Identities=14%  Similarity=0.173  Sum_probs=88.3

Q ss_pred             hhHHHHHHhCCCcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 023753          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (277)
Q Consensus       177 ~yY~~m~e~~Gd~deAi~~yekALeldP~n~-~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~  255 (277)
                      ..|..+....+++++|...|+++++..|.+. .+|..++.++. ..+++++|...|++|++..|.+...+..+|.+.+..
T Consensus       103 ~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~-~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~  181 (308)
T d2onda1         103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC  181 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            4567888889999999999999999999875 57899998886 789999999999999999999999999999877664


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 023753          256 HKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       256 ~Gd~deAi~~yekALeldPdD  276 (277)
                      .++.+.|..+|++++...|++
T Consensus       182 ~~~~~~a~~i~e~~l~~~p~~  202 (308)
T d2onda1         182 SKDKSVAFKIFELGLKKYGDI  202 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTC
T ss_pred             ccCHHHHHHHHHHHHHhhhhh
Confidence            689999999999999999875

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=1.4e-07  Score=78.53  Aligned_cols=93  Identities=20%  Similarity=0.149  Sum_probs=79.5

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILA------NPSDGNILSLYA  249 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n----~~al~nLA~lL~e~~Gd~eeA~e~~ekALel------dP~n~~al~~LA  249 (277)
                      ..++...+++++|..+|+++++..|.+    ...+.++|.++. ..+++++|+.++++++..      .|....++..+|
T Consensus       220 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  298 (366)
T d1hz4a_         220 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI-LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN  298 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHH
Confidence            355667799999999999999988765    456778898886 899999999999999854      355677899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753          250 DLIWQAHKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       250 ~ll~~~~Gd~deAi~~yekALeldP  274 (277)
                      .+++. .|++++|+.+|++|+++.+
T Consensus       299 ~~~~~-~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         299 QLYWQ-AGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHH-HTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-CCCHHHHHHHHHHHHHHhh
Confidence            99999 9999999999999998743

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.7e-07  Score=88.18  Aligned_cols=77  Identities=13%  Similarity=0.118  Sum_probs=70.7

Q ss_pred             hhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (277)
Q Consensus       177 ~yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~  254 (277)
                      .+.+.++...+++++|+.+|++|++++|+++.+++++|.++. ..+++.+|+.+|.||+.++|..+.++.+++.++-.
T Consensus       156 ~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~-~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS-SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH-HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            345567777899999999999999999999999999999886 89999999999999999999999999999987765

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=3.3e-07  Score=73.19  Aligned_cols=68  Identities=16%  Similarity=0.033  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          207 ALLLGNYARFLKEVR---GDFAKAEELCGRAILANPSDG-NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       207 ~~al~nLA~lL~e~~---Gd~eeA~e~~ekALeldP~n~-~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ....|+||++|. ..   .+..+|+..|+++++.+|.+. ++++++|..+++ .|+|++|+.+++++|+++|+|
T Consensus        35 ~qt~F~YAw~Lv-~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk-lgdy~~A~~~~~~~L~ieP~n  106 (124)
T d2pqrb1          35 IQSRFNYAWGLI-KSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNN  106 (124)
T ss_dssp             HHHHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTC
T ss_pred             cchHHHHHHHHH-cCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCCc
Confidence            678899999886 33   356799999999999999775 799999999999 999999999999999999987

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.24  E-value=8.4e-06  Score=63.07  Aligned_cols=84  Identities=17%  Similarity=0.151  Sum_probs=70.2

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCH
Q 023753          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE---VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ---AHKDA  259 (277)
Q Consensus       186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e---~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~---~~Gd~  259 (277)
                      ..++++|+.+|+++.+.  +++.+.+++|.+|..   ...|+++|+++|++|.+.  .++.+.++||.+|..   ...|+
T Consensus        36 ~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~  111 (133)
T d1klxa_          36 QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNE  111 (133)
T ss_dssp             TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             ccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCH
Confidence            35788999999999875  689999999988752   145899999999999875  688999999999876   23589


Q ss_pred             HHHHHHHHHHHHhC
Q 023753          260 SRAESYFDQAVKSA  273 (277)
Q Consensus       260 deAi~~yekALeld  273 (277)
                      ++|+.+|++|.++.
T Consensus       112 ~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         112 KQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCC
Confidence            99999999998764

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.21  E-value=1.4e-06  Score=69.00  Aligned_cols=65  Identities=17%  Similarity=0.070  Sum_probs=55.0

Q ss_pred             HHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753          208 LLLGNY--ARFLKEVRGDFAKAEELCGRAILANPSD------------GNILSLYADLIWQAHKDASRAESYFDQAVKSA  273 (277)
Q Consensus       208 ~al~nL--A~lL~e~~Gd~eeA~e~~ekALeldP~n------------~~al~~LA~ll~~~~Gd~deAi~~yekALeld  273 (277)
                      .++..+  |..++ ..|+|++|+..|++||+++|+.            +.+|.++|.+|.. +|++++|+..+++++++.
T Consensus         8 ~a~~~l~~g~~~~-~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~-lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           8 GAYLALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH-cCccchhhHhhhhhhhcc
Confidence            344444  66665 6899999999999999999875            3578899999999 999999999999999875


Q ss_pred             C
Q 023753          274 P  274 (277)
Q Consensus       274 P  274 (277)
                      |
T Consensus        86 ~   86 (156)
T d2hr2a1          86 N   86 (156)
T ss_dssp             H
T ss_pred             c
Confidence            5

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.12  E-value=2e-06  Score=75.41  Aligned_cols=56  Identities=30%  Similarity=0.401  Sum_probs=54.1

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753          220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (277)
Q Consensus       220 ~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD  276 (277)
                      ..|++++|+++|+++|+.+|+|+.++..++.+|.. .|++++|+..|+++++++|++
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~-~G~~e~A~~~l~~a~~l~P~~   63 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEY   63 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGG
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCc
Confidence            57999999999999999999999999999999999 999999999999999999975

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.08  E-value=5.4e-06  Score=65.95  Aligned_cols=64  Identities=6%  Similarity=-0.023  Sum_probs=57.2

Q ss_pred             CCcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~-~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l  251 (277)
                      .+..+|+..+++++..+|.+. .+++++|..++ ..|+|++|..+++++|+++|+|..+....-.+
T Consensus        52 ~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yy-klgdy~~A~~~~~~~L~ieP~n~qA~~L~~~I  116 (124)
T d2pqrb1          52 NDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  116 (124)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHccCCCcHHHHHHHHHH
Confidence            567799999999999999875 89999999998 89999999999999999999999987665544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.88  E-value=0.00013  Score=60.69  Aligned_cols=91  Identities=16%  Similarity=0.200  Sum_probs=74.7

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE---VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA-  255 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e---~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~-  255 (277)
                      +..+...+++++|+++|++|.+.  +++.++++||.+|..   ...++.+|..+++++...  .++.+...+|.++... 
T Consensus         9 G~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~~~~~~~~   84 (265)
T d1ouva_           9 GAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLGNLYYSGQ   84 (265)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcccccccccc
Confidence            45666789999999999999875  689999999998862   156999999999998764  5888888898877641 


Q ss_pred             --cCCHHHHHHHHHHHHHhCC
Q 023753          256 --HKDASRAESYFDQAVKSAP  274 (277)
Q Consensus       256 --~Gd~deAi~~yekALeldP  274 (277)
                        ..+.++|..+|++++...+
T Consensus        85 ~~~~~~~~a~~~~~~a~~~g~  105 (265)
T d1ouva_          85 GVSQNTNKALQYYSKACDLKY  105 (265)
T ss_dssp             SSCCCHHHHHHHHHHHHHTTC
T ss_pred             ccchhhHHHHHHHhhhhhhhh
Confidence              3588999999999987654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.81  E-value=3.3e-05  Score=64.35  Aligned_cols=83  Identities=13%  Similarity=0.105  Sum_probs=68.8

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCH
Q 023753          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPSDGNILSLYADLIWQA---HKDA  259 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~----~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~---~Gd~  259 (277)
                      .+...+..+++++.+  +.++.+++++|.++. .    .+++++|+.+|++|.+.  .++.++++||.+|..-   ..++
T Consensus       160 ~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~-~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~  234 (265)
T d1ouva_         160 KDLKKALASYDKACD--LKDSPGCFNAGNMYH-HGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNE  234 (265)
T ss_dssp             CCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCS
T ss_pred             cccccchhhhhcccc--ccccccccchhhhcc-cCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCH
Confidence            566678888888875  568999999998886 4    46999999999999987  5789999999988751   2389


Q ss_pred             HHHHHHHHHHHHhCC
Q 023753          260 SRAESYFDQAVKSAP  274 (277)
Q Consensus       260 deAi~~yekALeldP  274 (277)
                      ++|+.+|++|.....
T Consensus       235 ~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         235 KQAIENFKKGCKLGA  249 (265)
T ss_dssp             TTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHCcC
Confidence            999999999998754

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.79  E-value=3.1e-05  Score=59.70  Aligned_cols=80  Identities=19%  Similarity=0.156  Sum_probs=66.6

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHHH
Q 023753          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA---HKDASRAE  263 (277)
Q Consensus       187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~---~Gd~deAi  263 (277)
                      .|+++|+.+|++|.+.+  ++.+.++++..   ...++++|+.+|++|.+.  .++.+++.+|.+|..-   ..|+++|+
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~~---~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVSN---SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHTC---TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhccc---cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence            58899999999999875  66677777753   457899999999999875  6899999999998751   25789999


Q ss_pred             HHHHHHHHhC
Q 023753          264 SYFDQAVKSA  273 (277)
Q Consensus       264 ~~yekALeld  273 (277)
                      .+|++|.+..
T Consensus        80 ~~~~~aa~~g   89 (133)
T d1klxa_          80 QYYSKACGLN   89 (133)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHhhhhccC
Confidence            9999998764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.64  E-value=0.00012  Score=59.86  Aligned_cols=71  Identities=13%  Similarity=0.054  Sum_probs=57.8

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHHH
Q 023753          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA-------ILANPSDGNILSLYADLI  252 (277)
Q Consensus       180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekA-------LeldP~n~~al~~LA~ll  252 (277)
                      ...+...|++++|+.+++++++++|.+..+|.+++.+|. ..|++.+|++.|+++       +-++|. +.....+..++
T Consensus        74 a~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~-~~Gr~~eAl~~y~~~~~~L~~eLG~~P~-~~l~~l~~~il  151 (179)
T d2ff4a2          74 AEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYY-LSDRQSDALGAYRRVKTTLADDLGIDPG-PTLRALNERIL  151 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHSCCCC-HHHHHHHHHHH
T ss_pred             HHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence            355666899999999999999999999999999999997 899999999999998       446775 33333333433

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.42  E-value=4.1  Score=33.77  Aligned_cols=47  Identities=11%  Similarity=0.111  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHH-----hCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753          225 AKAEELCGRAIL-----ANPSDGNI---LSLYADLIWQAHKDASRAESYFDQAVK  271 (277)
Q Consensus       225 eeA~e~~ekALe-----ldP~n~~a---l~~LA~ll~~~~Gd~deAi~~yekALe  271 (277)
                      ++|.++|++|++     +.|.+|..   ..+++.+++...++.++|++.-++|+.
T Consensus       143 ~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd  197 (230)
T d2o02a1         143 DQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFD  197 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            468888888875     46778775   446788888888999999988888775

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=87.01  E-value=0.89  Score=38.01  Aligned_cols=57  Identities=9%  Similarity=-0.012  Sum_probs=41.9

Q ss_pred             hHHHHHHh-CCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023753          178 SNNNYSNN-NHGSSSTDAYYEKMIEA-----NPGNA---LLLGNYARFLKEVRGDFAKAEELCGRA  234 (277)
Q Consensus       178 yY~~m~e~-~Gd~deAi~~yekALel-----dP~n~---~al~nLA~lL~e~~Gd~eeA~e~~ekA  234 (277)
                      |||-+.+- .+..++|...|++|+++     .|.+|   ....|++.++++..++.++|.+..++|
T Consensus       127 YyRYlaE~~~~~~~~a~~aY~~A~~ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A  192 (220)
T d2o8pa1         127 ISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSL  192 (220)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            55555553 47778899999998775     24444   567788888888889999888877666

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=83.61  E-value=2  Score=36.05  Aligned_cols=59  Identities=20%  Similarity=0.242  Sum_probs=42.0

Q ss_pred             hHHHHHHhCCC------cHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753          178 SNNNYSNNNHG------SSSTDAYYEKMIE-----ANPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAIL  236 (277)
Q Consensus       178 yY~~m~e~~Gd------~deAi~~yekALe-----ldP~n~~---al~nLA~lL~e~~Gd~eeA~e~~ekALe  236 (277)
                      ||+-+.+....      .++|...|++|++     +.|.+|.   ...|++.+|++..++.++|++..++|+.
T Consensus       130 yyRYlaE~~~~~e~~~~~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd  202 (236)
T d1o9da_         130 YHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  202 (236)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            55545554422      3367888888875     4777874   4568888888888999999888888865

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=83.16  E-value=9.7  Score=31.29  Aligned_cols=47  Identities=4%  Similarity=0.048  Sum_probs=29.3

Q ss_pred             CHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023753          223 DFAKAEELCGRAILA--------NPSDGNILSLYADLIWQAHKDASRAESYFDQA  269 (277)
Q Consensus       223 d~eeA~e~~ekALel--------dP~n~~al~~LA~ll~~~~Gd~deAi~~yekA  269 (277)
                      ..++|..+|++|..+        +|-.-....+++.+++...++.++|.+..++|
T Consensus       138 ~~~~a~~aY~~A~~ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A  192 (220)
T d2o8pa1         138 SLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSL  192 (220)
T ss_dssp             CHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            456677777777664        23333445667777777677777777665555

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.52  E-value=1.5  Score=36.64  Aligned_cols=47  Identities=23%  Similarity=0.316  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753          190 SSTDAYYEKMIE-----ANPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAIL  236 (277)
Q Consensus       190 deAi~~yekALe-----ldP~n~~---al~nLA~lL~e~~Gd~eeA~e~~ekALe  236 (277)
                      ++|...|++|++     +.|.+|.   ...|++.++++..++.++|++..++|+.
T Consensus       143 ~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd  197 (230)
T d2o02a1         143 DQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFD  197 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            368999999875     4788885   4568999999999999999999998875

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=82.26  E-value=0.95  Score=37.98  Aligned_cols=47  Identities=23%  Similarity=0.400  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHh-------CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753          190 SSTDAYYEKMIEA-------NPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAIL  236 (277)
Q Consensus       190 deAi~~yekALel-------dP~n~~---al~nLA~lL~e~~Gd~eeA~e~~ekALe  236 (277)
                      ++|...|++|+++       .|.||.   ...|++.+|++..++.++|.+..++|+.
T Consensus       124 ~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~~lAk~Afd  180 (223)
T d3efza1         124 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQ  180 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4688899999754       277873   4568888999889999999998887773