Citrus Sinensis ID: 023754

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MLYHFHKGSILLFLDWYLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYARKRKELKEREKLKNVEVEEEHVDERSVDDLLSFINGGNGDSKGIKTNKNKKKNRRRKDQLKDSSTNNLNGNHKEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCSTAVTCSPKMEFDDGEIDDDLDPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLVQVSMNGNCSSRRCTSLDSR
Secondary Structure (PSIPRED)
ccccccccEEEEEEEEcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEccccEEEEEEEEEHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHEccccccccccEcccccccccccHHccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccEEEEEccccccccccccccc
Coil and Loop (DISEMBL)
mlyhfhkgsiLLFLDWYLITAGFIKYQAAQISLQLKPLVDLTSRALARIIegktpeeiretfhlpddlteeekleplnnvtddprIRLLNRLYARKRKELKEReklknveveeehvdersvDDLLSfinggngdskgiktnknkkknrrrkdqlkdsstnnlngnhkeFNSLHSAfhngglndiavstphktsklqcstavtcspkmefddgeidddldpAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLVQVsmngncssrrctsldsr
Flexible Loop (DISEMBL)
MLYHFHKGSILLFLDWYLITAGFIKYQAAQISLQLKPLVDLTSRALARIiegktpeeiretfhlpddlteeekleplnnvtddprirlLNRLYArkrkelkereklknveveeehvdersvddllsfinggngdskgiktnknkkknrrrkdqlkdsstnnlngnHKEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCSTAVTCSPKMEFDDGEIDDDLDPAMKEELDREVEDFArrlnsdwpQRMQEILslgqdrrlvqvsmngncssrrctsldsr
Low Complexity Region (SEG)
MLYHFHKGSILLFLDWYLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYArkrkelkereklknveveeeHVDERSVDDLLSFINGGNGDSKGIKTnknkkknrrrkDQLKDSSTNNLNGNHKEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCSTAVTCSPKMEFddgeidddldPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLVQVSMNGNCSSRRCTSLDSR
Disordered region (IsUnstruct)
**YHFHKGSILLFLDWYLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGK********************************IRLLNRLY****************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
**YHFHKGSILLFLDWYLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKL********************************************RSVDDLLSF************************************************************************AVTCSPKMEFDDGEIDDDLDPAMKEELDREVEDFARRLNSDWPQRMQ*******************CS**********
Disordered Region (DISEMBL)
MLYHFHKGSILLFLDWYLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYARKRKELKEREKLK***********RSVDDLLSFINGGNGDSKGIK*****************SSTNNLNGNHKEFNSLHSAFHNGGLNDIAVSTP*********TAVTCSPKMEFDDGEIDDDLDPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLVQVSMNGN************
Disordered Region (DISPRO)
MLYHFHKGSILLFLDWYLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYARKRKELKEREKLKNVEVEEEHVDERSVDDLLSFINGG********************************************************************AVTCSPKMEFDDGEIDDDLDPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLVQVSMNGNCS**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLYHFHKGSILLFLDWYLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLxxxxxxxxxxxxxxxxxxxxxEVEEEHVDERSVDDLLSFINGGNGDSKGIKTNKNKKKNRRRKDQLKDSSTNNLNGNHKEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCSTAVTCSPKMEFDDGEIDDDLDPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLVQVSMNGNCSSRRCTSLDSR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	277	2.2.26 [Sep-21-2011]
Q8LF97	351	SKP1-like protein 21 OS=A	yes	no	0.880	0.695	0.624	1e-67
A8MQG7	352	SKP1-like protein 20 OS=A	no	no	0.873	0.687	0.575	2e-56
Q71U00	163	S-phase kinase-associated	N/A	no	0.148	0.251	0.536	2e-05
Q5R512	163	S-phase kinase-associated	yes	no	0.148	0.251	0.536	2e-05
Q4R5B9	163	S-phase kinase-associated	N/A	no	0.148	0.251	0.536	2e-05
P63208	163	S-phase kinase-associated	yes	no	0.148	0.251	0.536	2e-05
Q5ZKF5	163	S-phase kinase-associated	yes	no	0.148	0.251	0.536	2e-05
P63209	163	S-phase kinase-associated	yes	no	0.148	0.251	0.536	2e-05
Q3ZCF3	163	S-phase kinase-associated	yes	no	0.148	0.251	0.536	2e-05
Q6PEC4	163	S-phase kinase-associated	yes	no	0.148	0.251	0.536	2e-05

>sp|Q8LF97|ASK21_ARATH SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1

 Score =  256 bits (654), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 158/253 (62%), Positives = 184/253 (72%), Gaps = 9/253 (3%)

Query: 20  TAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN 79
           T    +  +A  SLQLKPLVDLTSRALARIIEGKTPEEIRE FHLPDDLTEEEKLEPL N
Sbjct: 101 TKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 160

Query: 80  VTDDPRIRLLNRLYARKRKELKEREKLKNVEVEEEHVDERSVDDLLSFINGGNGDSKGIK 139
             DDPRIRLLNRLYA+KRKELKEREKLK+VEV EEHVDERSVDDLLSFING   D K +K
Sbjct: 161 TMDDPRIRLLNRLYAKKRKELKEREKLKSVEV-EEHVDERSVDDLLSFING--RDPKVVK 217

Query: 140 TNKNKKKNRRRKDQLKDSSTNNLNGNHKEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCST 199
           T+K+KKKN++RK+Q   SS        K+ ++L S   +  + D   S     S L    
Sbjct: 218 TSKSKKKNKKRKEQKNGSSNGTCEALEKDLHNLDSKSQSAEIVDNTASCLGDVSNLPSME 277

Query: 200 AVTCSPKMEFDDGEIDDDLDPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLVQ 259
               +PK EF+DG IDD++DPA+KE LDREVEDFARRLNS W      +LS+GQ+R+ V 
Sbjct: 278 DDIFTPKTEFEDGYIDDEIDPALKELLDREVEDFARRLNSSW------VLSIGQERQPVN 331

Query: 260 VSMNGNCSSRRCT 272
            S+NGN +SRR T
Sbjct: 332 FSINGNGTSRRLT 344

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.
Arabidopsis thaliana (taxid: 3702)

>sp|A8MQG7|ASK20_ARATH SKP1-like protein 20 OS=Arabidopsis thaliana GN=ASK20 PE=2 SV=1

 Score =  219 bits (557), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 148/257 (57%), Positives = 177/257 (68%), Gaps = 15/257 (5%)

Query: 20  TAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN 79
           T    +  +A  SLQLKPLVDLTSRALARIIEGK PEEIRE FHLPDDLTEEEKLEPL N
Sbjct: 101 TKRLCELTSAADSLQLKPLVDLTSRALARIIEGKNPEEIREIFHLPDDLTEEEKLEPLKN 160

Query: 80  VTDDPRIRLLNRLYARKRKELKEREKLKNVEVEEEHVDERSVDDLLSFINGGNGDSKGIK 139
             DDPRIRLLNRLYA+KRKELKERE+LKNVEV EEHVDERSVDDLLSFING   D K +K
Sbjct: 161 SMDDPRIRLLNRLYAKKRKELKERERLKNVEV-EEHVDERSVDDLLSFING--RDHKAVK 217

Query: 140 TNKNKKKNRRRKDQLKDSSTNNLNGNHKEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCST 199
            +K KKK +++KDQ   SS N  +    +  S        G      S+  +   L  + 
Sbjct: 218 MSKGKKKKKKKKDQKIVSSNNIHDKESHDLRSKQQCVEEIG------SSMREVPNLLSAE 271

Query: 200 AVTCSPKMEFDDGEIDDDLDPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLVQ 259
               +P    +D +IDD++DPAM+E LDREVEDFA+RLNS+W      + SLG++RR V 
Sbjct: 272 DDISTPNAGSEDEDIDDEIDPAMRELLDREVEDFAQRLNSNW------VRSLGKERRPVH 325

Query: 260 VSMNGNCSSRRCTSLDS 276
            S+NGN ++RR T + S
Sbjct: 326 FSINGNGTTRRHTGMVS 342

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q71U00|SKP1_XENLA S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 34/41 (82%)

Query: 33  LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
           L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 150

Essential component of the SCF (SKP1-CUL1-F-box protein) ubiquitin ligase complex, which mediates the ubiquitination of proteins involved in cell cycle progression, signal transduction and transcription. In the SCF complex, serves as an adapter that links the F-box protein to CUL1.

Xenopus laevis (taxid: 8355)

>sp|Q5R512|SKP1_PONAB S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 34/41 (82%)

Query: 33  LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
           L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 150

Essential component of the SCF (SKP1-CUL1-F-box protein) ubiquitin ligase complex, which mediates the ubiquitination of proteins involved in cell cycle progression, signal transduction and transcription. In the SCF complex, serves as an adapter that links the F-box protein to CUL1. SCF(BTRC) mediates the ubiquitination of NFKBIA at 'Lys-21' and 'Lys-22'; the degradation frees the associated NFKB1-RELA dimer to translocate into the nucleus and to activate transcription. SCF(Cyclin F) directs ubiquitination of CP110.

Pongo abelii (taxid: 9601)

>sp|Q4R5B9|SKP1_MACFA S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 34/41 (82%)

Query: 33  LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
           L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 150

Essential component of the SCF (SKP1-CUL1-F-box protein) ubiquitin ligase complex, which mediates the ubiquitination of proteins involved in cell cycle progression, signal transduction and transcription. In the SCF complex, serves as an adapter that links the F-box protein to CUL1. SCF(BTRC) mediates the ubiquitination of NFKBIA at 'Lys-21' and 'Lys-22'; the degradation frees the associated NFKB1-RELA dimer to translocate into the nucleus and to activate transcription. SCF(Cyclin F) directs ubiquitination of CP110.

Macaca fascicularis (taxid: 9541)

>sp|P63208|SKP1_HUMAN S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 34/41 (82%)

Query: 33  LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
           L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 150

Essential component of the SCF (SKP1-CUL1-F-box protein) ubiquitin ligase complex, which mediates the ubiquitination of proteins involved in cell cycle progression, signal transduction and transcription. In the SCF complex, serves as an adapter that links the F-box protein to CUL1. SCF(BTRC) mediates the ubiquitination of NFKBIA at 'Lys-21' and 'Lys-22'; the degradation frees the associated NFKB1-RELA dimer to translocate into the nucleus and to activate transcription. SCF(Cyclin F) directs ubiquitination of CP110.

Homo sapiens (taxid: 9606)

>sp|Q5ZKF5|SKP1_CHICK S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 34/41 (82%)

Query: 33  LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
           L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 150

Essential component of the SCF (SKP1-CUL1-F-box protein) ubiquitin ligase complex, which mediates the ubiquitination of proteins involved in cell cycle progression, signal transduction and transcription. In the SCF complex, serves as an adapter that links the F-box protein to CUL1.

Gallus gallus (taxid: 9031)

>sp|P63209|SKP1_CAVPO S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 34/41 (82%)

Query: 33  LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
           L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 150

Essential component of the SCF (SKP1-CUL1-F-box protein) ubiquitin ligase complex, which mediates the ubiquitination of proteins involved in cell cycle progression, signal transduction and transcription. In the SCF complex, serves as an adapter that links the F-box protein to CUL1. SCF(BTRC) mediates the ubiquitination of NFKBIA at 'Lys-21' and 'Lys-22'; the degradation frees the associated NFKB1-RELA dimer to translocate into the nucleus and to activate transcription. SCF(Cyclin F) directs ubiquitination of CP110.

Cavia porcellus (taxid: 10141)

>sp|Q3ZCF3|SKP1_BOVIN S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 34/41 (82%)

Query: 33  LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
           L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 150

Essential component of the SCF (SKP1-CUL1-F-box protein) ubiquitin ligase complex, which mediates the ubiquitination of proteins involved in cell cycle progression, signal transduction and transcription. In the SCF complex, serves as an adapter that links the F-box protein to CUL1. SCF(BTRC) mediates the ubiquitination of NFKBIA at 'Lys-21' and 'Lys-22'; the degradation frees the associated NFKB1-RELA dimer to translocate into the nucleus and to activate transcription. SCF(Cyclin F) directs ubiquitination of CP110.

Bos taurus (taxid: 9913)

>sp|Q6PEC4|SKP1_RAT S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=2 SV=3

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 34/41 (82%)

Query: 33  LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
           L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 150

Essential component of the SCF (SKP1-CUL1-F-box protein) ubiquitin ligase complex, which mediates the ubiquitination of proteins involved in cell cycle progression, signal transduction and transcription. In the SCF complex, serves as an adapter that links the F-box protein to CUL1. SCF(BTRC) mediates the ubiquitination of NFKBIA at 'Lys-21' and 'Lys-22'; the degradation frees the associated NFKB1-RELA dimer to translocate into the nucleus and to activate transcription. SCF(Cyclin F) directs ubiquitination of CP110.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
302143834	358	unnamed protein product [Vitis vinifera]	0.931	0.720	0.783	1e-90
225464509	359	PREDICTED: SKP1-like protein 21-like [Vi	0.906	0.699	0.781	2e-87
449456470	425	PREDICTED: SKP1-like protein 21-like [Cu	0.909	0.592	0.739	3e-82
255545240	378	ubiquitin-protein ligase, putative [Rici	0.898	0.658	0.777	2e-81
225454254	388	PREDICTED: SKP1-like protein 21-like [Vi	0.891	0.636	0.678	2e-79
297745305	351	unnamed protein product [Vitis vinifera]	0.891	0.703	0.679	1e-78
224067902	345	predicted protein [Populus trichocarpa]	0.866	0.695	0.638	1e-77
224119972	363	predicted protein [Populus trichocarpa]	0.931	0.710	0.725	7e-76
356530850	344	PREDICTED: SKP1-like protein 21-like [Gl	0.927	0.747	0.713	3e-74
356561534	376	PREDICTED: SKP1-like protein 21-like [Gl	0.916	0.675	0.713	5e-74

>gi|302143834|emb|CBI22695.3| unnamed protein product [Vitis vinifera]

 Score =  338 bits (868), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 203/259 (78%), Positives = 228/259 (88%), Gaps = 1/259 (0%)

Query: 20  TAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN 79
           T    +  +A  SLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPL N
Sbjct: 100 TKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRN 159

Query: 80  VTDDPRIRLLNRLYARKRKELKEREKLKNVEVEEEHVDERSVDDLLSFINGGNGDSKGIK 139
           +TDDPRIRLLNRLYARKRKELKEREKLKNVEVEEE VDERSVDDLLSFING +GDSKG++
Sbjct: 160 ITDDPRIRLLNRLYARKRKELKEREKLKNVEVEEERVDERSVDDLLSFINGEDGDSKGVR 219

Query: 140 TNKNKKKNRRRKDQLKDSSTNNLNGNH-KEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCS 198
            +KNKKKNRRRKDQ+KDSS+NN+NG+H KE + +H++ HN   +++ VSTP KTSKLQ  
Sbjct: 220 ASKNKKKNRRRKDQMKDSSSNNVNGDHKKELDGVHTSCHNAEADEMLVSTPSKTSKLQEL 279

Query: 199 TAVTCSPKMEFDDGEIDDDLDPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLV 258
            A T SPK+EFDDG+IDD+LDPAMKE+LDREVEDFARRLNSDWP+RMQEILSLGQ RRLV
Sbjct: 280 PASTFSPKLEFDDGDIDDELDPAMKEQLDREVEDFARRLNSDWPERMQEILSLGQQRRLV 339

Query: 259 QVSMNGNCSSRRCTSLDSR 277
            +SMNGN S+ R TSLDSR
Sbjct: 340 PISMNGNGSAHRYTSLDSR 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464509|ref|XP_002269721.1| PREDICTED: SKP1-like protein 21-like [Vitis vinifera]

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 197/252 (78%), Positives = 222/252 (88%), Gaps = 1/252 (0%)

Query: 20  TAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN 79
           T    +  +A  SLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPL N
Sbjct: 100 TKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRN 159

Query: 80  VTDDPRIRLLNRLYARKRKELKEREKLKNVEVEEEHVDERSVDDLLSFINGGNGDSKGIK 139
           +TDDPRIRLLNRLYARKRKELKEREKLKNVEVEEE VDERSVDDLLSFING +GDSKG++
Sbjct: 160 ITDDPRIRLLNRLYARKRKELKEREKLKNVEVEEERVDERSVDDLLSFINGEDGDSKGVR 219

Query: 140 TNKNKKKNRRRKDQLKDSSTNNLNGNH-KEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCS 198
            +KNKKKNRRRKDQ+KDSS+NN+NG+H KE + +H++ HN   +++ VSTP KTSKLQ  
Sbjct: 220 ASKNKKKNRRRKDQMKDSSSNNVNGDHKKELDGVHTSCHNAEADEMLVSTPSKTSKLQEL 279

Query: 199 TAVTCSPKMEFDDGEIDDDLDPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLV 258
            A T SPK+EFDDG+IDD+LDPAMKE+LDREVEDFARRLNSDWP+RMQEILSLGQ RRLV
Sbjct: 280 PASTFSPKLEFDDGDIDDELDPAMKEQLDREVEDFARRLNSDWPERMQEILSLGQQRRLV 339

Query: 259 QVSMNGNCSSRR 270
            +SMNGN S+ R
Sbjct: 340 PISMNGNGSAHR 351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456470|ref|XP_004145972.1| PREDICTED: SKP1-like protein 21-like [Cucumis sativus] gi|449524038|ref|XP_004169030.1| PREDICTED: SKP1-like protein 21-like [Cucumis sativus]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 190/257 (73%), Positives = 209/257 (81%), Gaps = 5/257 (1%)

Query: 20  TAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN 79
           T    +  +A  SLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPL N
Sbjct: 100 TKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRN 159

Query: 80  VTDDPRIRLLNRLYARKRKELKEREKLKNVEVEEEHVDERSVDDLLSFINGGNGDSKGIK 139
           +TDDPRIRLLNRLYARKRKEL+EREKLKNVE+ EE VD+RSVDDLLSFINGG+GDSK +K
Sbjct: 160 ITDDPRIRLLNRLYARKRKELREREKLKNVEI-EERVDDRSVDDLLSFINGGDGDSKAVK 218

Query: 140 TNKNKKKNRRRKDQLKD-SSTNNLNGNHK--EFNSLHSAFHNGGLNDIAVSTPHKTSKLQ 196
           TNKNKKKNRRRKDQ KD SST N NGNH   E ++L S   N   N I  ++P +T K Q
Sbjct: 219 TNKNKKKNRRRKDQQKDSSSTTNENGNHDKIELDALPSCCQNNEFNQILGASPSRTVKSQ 278

Query: 197 CSTAVTCSPKMEFDDGEIDDDLDPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRR 256
            S A   S K+EFDD +I DDLDPAMKEELDREVEDFARRLNSDWP+R+QEILSLGQ+R 
Sbjct: 279 DSAAAMYSSKIEFDDADIYDDLDPAMKEELDREVEDFARRLNSDWPERVQEILSLGQERN 338

Query: 257 LVQVSMNGNCSSRRCTS 273
           LV V + GN SS R TS
Sbjct: 339 LVTV-LTGNGSSPRFTS 354

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545240|ref|XP_002513681.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223547589|gb|EEF49084.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 196/252 (77%), Positives = 218/252 (86%), Gaps = 3/252 (1%)

Query: 20  TAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN 79
           T    +  +A  SLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPL N
Sbjct: 88  TKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRN 147

Query: 80  VTDDPRIRLLNRLYARKRKELKEREKLKNVEVEEEHVDERSVDDLLSFINGGNGDSKGIK 139
           VTDDPRIRLLNRLYARKRKELKEREK+KNVEVEEE VDERSVDDLLS+ING +GD KG +
Sbjct: 148 VTDDPRIRLLNRLYARKRKELKEREKMKNVEVEEERVDERSVDDLLSYINGADGDPKGGR 207

Query: 140 TNKNKKKNRRRKDQLKDSSTNNLNGNH-KEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCS 198
           T+KNKKKNRRRKDQ K+SS+NNLN NH K+ NS  SA H+G + D+ V++P KTS+ Q S
Sbjct: 208 TSKNKKKNRRRKDQSKESSSNNLNENHNKKTNSCPSACHSGEVRDM-VASPSKTSR-QES 265

Query: 199 TAVTCSPKMEFDDGEIDDDLDPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLV 258
            A + SPK+EFDD +IDDDLDPAMKEELDREVEDFARRLNSDWP+RMQEILSLGQ+RRLV
Sbjct: 266 GAASLSPKLEFDDADIDDDLDPAMKEELDREVEDFARRLNSDWPERMQEILSLGQERRLV 325

Query: 259 QVSMNGNCSSRR 270
            +SMNGN S  R
Sbjct: 326 PLSMNGNGSLSR 337

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454254|ref|XP_002275024.1| PREDICTED: SKP1-like protein 21-like [Vitis vinifera]

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 171/252 (67%), Positives = 202/252 (80%), Gaps = 5/252 (1%)

Query: 20  TAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN 79
           T    +  +A  SLQLKPLVDLTSRALAR+IEGKTPEEIRETFHLPDDLTEEEKLEPL N
Sbjct: 101 TKRLCELTSAADSLQLKPLVDLTSRALARMIEGKTPEEIRETFHLPDDLTEEEKLEPLKN 160

Query: 80  VTDDPRIRLLNRLYARKRKELKEREKLKNVEVEEEHVDERSVDDLLSFINGGNGDSKGIK 139
           +TDDPRIRLLNRLYARKRKELKERE+LKNVEVEEE VD RSVDDLLSFINGGN DSKG+ 
Sbjct: 161 ITDDPRIRLLNRLYARKRKELKERERLKNVEVEEECVDYRSVDDLLSFINGGNEDSKGVG 220

Query: 140 TNKNKKKNRRRKDQLKDSSTNN-LNGNHKEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCS 198
           T+KNKKKNRRRKDQ K++S+N+ +   HK+ N L S  H+  +N+   S+P + SKLQ  
Sbjct: 221 TSKNKKKNRRRKDQQKNTSSNHAIETTHKKSNCLKSVHHDVEINNNLQSSPSERSKLQDI 280

Query: 199 TAVTCSPKMEFDDGEIDDDLDPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLV 258
                SP+  F+DG+IDD+ DPA++E++DREVEDF R LNSDWP+RMQEILSLG++R+  
Sbjct: 281 QDDMFSPQANFEDGDIDDEFDPAIQEKIDREVEDFERILNSDWPERMQEILSLGRERK-- 338

Query: 259 QVSMNGNCSSRR 270
              +NGN S  R
Sbjct: 339 --PINGNGSLSR 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745305|emb|CBI40385.3| unnamed protein product [Vitis vinifera]

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 172/253 (67%), Positives = 202/253 (79%), Gaps = 6/253 (2%)

Query: 20  TAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN 79
           T    +  +A  SLQLKPLVDLTSRALAR+IEGKTPEEIRETFHLPDDLTEEEKLEPL N
Sbjct: 101 TKRLCELTSAADSLQLKPLVDLTSRALARMIEGKTPEEIRETFHLPDDLTEEEKLEPLKN 160

Query: 80  VTDDPRIRLLNRLYARKRKELKEREKLKNVEVEEEHVDERSVDDLLSFINGGNGDSKGIK 139
           +TDDPRIRLLNRLYARKRKELKERE+LKNVEVEEE VD RSVDDLLSFINGGN DSKG+ 
Sbjct: 161 ITDDPRIRLLNRLYARKRKELKERERLKNVEVEEECVDYRSVDDLLSFINGGNEDSKGVG 220

Query: 140 TNKNKKKNRRRKDQLKDSSTNN-LNGNH-KEFNSLHSAFHNGGLNDIAVSTPHKTSKLQC 197
           T+KNKKKNRRRKDQ K++S+N+ +   H KE N L S  H+  +N+   S+P + SKLQ 
Sbjct: 221 TSKNKKKNRRRKDQQKNTSSNHAIETTHKKESNCLKSVHHDVEINNNLQSSPSERSKLQD 280

Query: 198 STAVTCSPKMEFDDGEIDDDLDPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRL 257
                 SP+  F+DG+IDD+ DPA++E++DREVEDF R LNSDWP+RMQEILSLG++R+ 
Sbjct: 281 IQDDMFSPQANFEDGDIDDEFDPAIQEKIDREVEDFERILNSDWPERMQEILSLGRERK- 339

Query: 258 VQVSMNGNCSSRR 270
               +NGN S  R
Sbjct: 340 ---PINGNGSLSR 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067902|ref|XP_002302590.1| predicted protein [Populus trichocarpa] gi|222844316|gb|EEE81863.1| predicted protein [Populus trichocarpa]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 164/257 (63%), Positives = 197/257 (76%), Gaps = 17/257 (6%)

Query: 20  TAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN 79
           T    +  +A  SLQLKPLVDLTSRALARIIEGKTPEEIRE FHLPDDLTEEEKLEPL N
Sbjct: 101 TKRLCELTSAAESLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 160

Query: 80  VTDDPRIRLLNRLYARKRKELKEREKLKNVEVEEEHVDERSVDDLLSFINGGNGDSKGIK 139
            TDDPRIRLLNRLYA+KRKELKEREKLKNVE EEEHVD+RSVDDLLSFINGG+GDSKG+K
Sbjct: 161 TTDDPRIRLLNRLYAKKRKELKEREKLKNVEAEEEHVDDRSVDDLLSFINGGDGDSKGMK 220

Query: 140 TNKNKKKNRRRKDQLKDSSTNNLNGNHKEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCST 199
           T+KN+KK ++RKD+ K +   +   +H+  +SL    +                 LQ + 
Sbjct: 221 TSKNRKKQQKRKDRQKCAPEMHKKDDHELQSSLREKLN-----------------LQDAA 263

Query: 200 AVTCSPKMEFDDGEIDDDLDPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLVQ 259
            V  SP +EF+D +ID ++DPA+KEE+DREVEDFAR LNSDWP+RMQE+LSLGQ+RR  Q
Sbjct: 264 DVIFSPTVEFEDVDIDGEIDPALKEEIDREVEDFARILNSDWPERMQELLSLGQERRPAQ 323

Query: 260 VSMNGNCSSRRCTSLDS 276
           +S+NGN + +R  S+ S
Sbjct: 324 LSINGNGNLKRYGSMPS 340

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119972|ref|XP_002318211.1| predicted protein [Populus trichocarpa] gi|222858884|gb|EEE96431.1| predicted protein [Populus trichocarpa]

 Score =  290 bits (741), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 188/259 (72%), Positives = 215/259 (83%), Gaps = 1/259 (0%)

Query: 20  TAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN 79
           T    +  +A  SLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPL N
Sbjct: 100 TKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLGN 159

Query: 80  VTDDPRIRLLNRLYARKRKELKEREKLKNVEVEEEHVDERSVDDLLSFINGGNGDSKGIK 139
           +TDDPRIRLLNRLYARKR+EL+EREKLKNV+VE+E  D RSV+DLLSFING +GDSKG +
Sbjct: 160 ITDDPRIRLLNRLYARKRRELREREKLKNVDVEDERSDNRSVEDLLSFINGEDGDSKGGR 219

Query: 140 TNKNKKKNRRRKDQLKDSSTNNLNGNH-KEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCS 198
            +KNKKKNRRRK+Q KDSS+NN N N  KE ++L S   N  +NDI  ++P KTS  Q  
Sbjct: 220 NSKNKKKNRRRKEQAKDSSSNNPNENQKKESDTLPSVSLNDEVNDILAASPSKTSNFQGC 279

Query: 199 TAVTCSPKMEFDDGEIDDDLDPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLV 258
           +AVT SPK++FDD +IDDDLDPAMKEELDREVEDFARRLNSDWP+RMQEILSL Q +R V
Sbjct: 280 SAVTFSPKLDFDDADIDDDLDPAMKEELDREVEDFARRLNSDWPERMQEILSLDQKKRPV 339

Query: 259 QVSMNGNCSSRRCTSLDSR 277
            +SMNGN +SRR + LD R
Sbjct: 340 PLSMNGNGTSRRYSGLDQR 358

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530850|ref|XP_003533992.1| PREDICTED: SKP1-like protein 21-like [Glycine max]

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 184/258 (71%), Positives = 206/258 (79%), Gaps = 1/258 (0%)

Query: 20  TAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN 79
           T    +  +A  SLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPL N
Sbjct: 88  TKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRN 147

Query: 80  VTDDPRIRLLNRLYARKRKELKEREKLKNVEVEEEHVDERSVDDLLSFINGGNGDSKGIK 139
           +TDDPRIRLLNRLYARKRKELKER+KLK+VEVEEE  DERSV+DLLSFING +GD KG +
Sbjct: 148 ITDDPRIRLLNRLYARKRKELKERKKLKDVEVEEEPKDERSVEDLLSFINGADGDIKGTR 207

Query: 140 TNKNKKKNRRRKDQLKDSSTNNLNGNHKEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCST 199
            NKNKKKNRRRKD  KD S+ N N N KE N L SA+H+   ++   ++  K S+ Q   
Sbjct: 208 ANKNKKKNRRRKDHAKDISSENTNENDKELNPLPSAYHDVNFDNALEASASKHSRTQNLP 267

Query: 200 AVTCSPKMEFDDGEIDDDLDPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLVQ 259
           A+  SPK EF DG++DDDLDPAMKEELDREVEDFARRLNSDWP+RMQ ILSLGQDRRLV 
Sbjct: 268 AINFSPKFEFIDGDVDDDLDPAMKEELDREVEDFARRLNSDWPERMQ-ILSLGQDRRLVP 326

Query: 260 VSMNGNCSSRRCTSLDSR 277
           +SMN N S+   T  D R
Sbjct: 327 ISMNSNGSTHLYTGFDQR 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561534|ref|XP_003549036.1| PREDICTED: SKP1-like protein 21-like [Glycine max]

 Score =  283 bits (725), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 182/255 (71%), Positives = 208/255 (81%), Gaps = 1/255 (0%)

Query: 20  TAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN 79
           T    +  +A  SLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPL N
Sbjct: 101 TKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRN 160

Query: 80  VTDDPRIRLLNRLYARKRKELKEREKLKNVEVEEEHVDERSVDDLLSFINGGNGDSKGIK 139
           +TDDPRIRLLNRLYARKRKELKER+KLK+VEVEEE  DERSV+DLLSFING +GD KG +
Sbjct: 161 ITDDPRIRLLNRLYARKRKELKERKKLKDVEVEEEPKDERSVEDLLSFINGADGDMKGTR 220

Query: 140 TNKNKKKNRRRKDQLKDSSTNNLNGNHKEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCST 199
           TNKNKKKNRRRKD  KD S+ N N N K+ N L SA+HN   ++   ++  K S++Q   
Sbjct: 221 TNKNKKKNRRRKDHAKDLSSKNENENDKDLNPLPSAYHNVYFDNALEASASKHSRMQNLP 280

Query: 200 AVTCSPKMEFDDGEIDDDLDPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLVQ 259
           A++ SPK EF DG++DDDLDPAMKEELDREVEDFARRLNSDWP+RMQ ILSLGQDRRLV 
Sbjct: 281 AISFSPKFEFIDGDVDDDLDPAMKEELDREVEDFARRLNSDWPERMQ-ILSLGQDRRLVP 339

Query: 260 VSMNGNCSSRRCTSL 274
           +S+N N S+   T +
Sbjct: 340 ISINSNGSTHLYTGM 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:505006407	351	SK21 "AT3G61415" [Arabidopsis	0.851	0.672	0.518	6.5e-51
TAIR|locus:2050709	352	SK20 "AT2G45950" [Arabidopsis	0.844	0.664	0.497	7.9e-46
UNIPROTKB|E5RJR5	163	SKP1 "S-phase kinase-associate	0.209	0.355	0.440	2.2e-08
UNIPROTKB|Q5ZKF5	163	SKP1 "S-phase kinase-associate	0.155	0.263	0.511	1.4e-07
UNIPROTKB|Q3ZCF3	163	SKP1 "S-phase kinase-associate	0.155	0.263	0.511	1.4e-07
UNIPROTKB|E2RRW0	163	SKP1 "Uncharacterized protein"	0.155	0.263	0.511	1.4e-07
UNIPROTKB|F8W8N3	158	SKP1 "S-phase kinase-associate	0.155	0.272	0.511	1.4e-07
UNIPROTKB|P63208	163	SKP1 "S-phase kinase-associate	0.155	0.263	0.511	1.4e-07
UNIPROTKB|P63209	163	SKP1 "S-phase kinase-associate	0.155	0.263	0.511	1.4e-07
UNIPROTKB|Q4R5B9	163	SKP1 "S-phase kinase-associate	0.155	0.263	0.511	1.4e-07

TAIR|locus:505006407 SK21 "AT3G61415" [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 127/245 (51%), Positives = 143/245 (58%)

Query:    28 AAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIR 87
             +A  SLQLKPLVDLTSRALARIIEGKTPEEIRE FHLPDDLTEEEKLEPL N  DDPRIR
Sbjct:   109 SAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTMDDPRIR 168

Query:    88 LLNRLYAXXXXXXXXXXXXXXXXXXXXHVDERSVDDLLSFINGGNGDSKGIKTXXXXXXX 147
             LLNRLYA                    HVDERSVDDLLSFING   D K +KT       
Sbjct:   169 LLNRLYAKKRKELKEREKLKSVEVEE-HVDERSVDDLLSFINGR--DPKVVKTSKSKKKN 225

Query:   148 XXXXDQLKDSSTNNLNGNHKEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCSTAVTCSPKM 207
                 +Q   SS        K+ ++L S   +  + D   S     S L        +PK 
Sbjct:   226 KKRKEQKNGSSNGTCEALEKDLHNLDSKSQSAEIVDNTASCLGDVSNLPSMEDDIFTPKT 285

Query:   208 EFXXXXXXXXXXPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLVQVSMNGNCS 267
             EF          PA+KE LDREVEDFARRLNS W      +LS+GQ+R+ V  S+NGN +
Sbjct:   286 EFEDGYIDDEIDPALKELLDREVEDFARRLNSSW------VLSIGQERQPVNFSINGNGT 339

Query:   268 SRRCT 272
             SRR T
Sbjct:   340 SRRLT 344

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

TAIR|locus:2050709 SK20 "AT2G45950" [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 124/249 (49%), Positives = 146/249 (58%)

Query:    28 AAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIR 87
             +A  SLQLKPLVDLTSRALARIIEGK PEEIRE FHLPDDLTEEEKLEPL N  DDPRIR
Sbjct:   109 SAADSLQLKPLVDLTSRALARIIEGKNPEEIREIFHLPDDLTEEEKLEPLKNSMDDPRIR 168

Query:    88 LLNRLYAXXXXXXXXXXXXXXXXXXXXHVDERSVDDLLSFINGGNGDSKGIKTXXXXXXX 147
             LLNRLYA                    HVDERSVDDLLSFING   D K +K        
Sbjct:   169 LLNRLYAKKRKELKERERLKNVEVEE-HVDERSVDDLLSFINGR--DHKAVKMSKGKKKK 225

Query:   148 XXXXDQLKDSSTNNLNGNHKEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCSTAVTCSPKM 207
                 DQ K  S+NN++   KE + L S      + +I  S     + L     ++ +P  
Sbjct:   226 KKKKDQ-KIVSSNNIHD--KESHDLRSK--QQCVEEIGSSMREVPNLLSAEDDIS-TPNA 279

Query:   208 EFXXXXXXXXXXPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLVQVSMNGNCS 267
                         PAM+E LDREVEDFA+RLNS+W      + SLG++RR V  S+NGN +
Sbjct:   280 GSEDEDIDDEIDPAMRELLDREVEDFAQRLNSNW------VRSLGKERRPVHFSINGNGT 333

Query:   268 SRRCTSLDS 276
             +RR T + S
Sbjct:   334 TRRHTGMVS 342

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

UNIPROTKB|E5RJR5 SKP1 "S-phase kinase-associated protein 1" [Homo sapiens (taxid:9606)]

 Score = 130 (50.8 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 26/59 (44%), Positives = 41/59 (69%)

Query:    17 YLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
             Y +    +  QAA   L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct:    95 YTLRKTTVSLQAANY-LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q5ZKF5 SKP1 "S-phase kinase-associated protein 1" [Gallus gallus (taxid:9031)]

 Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 22/43 (51%), Positives = 35/43 (81%)

Query:    33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
             L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct:   110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031519 "PcG protein complex" evidence=IEA

GO:0035518 "histone H2A monoubiquitination" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

UNIPROTKB|Q3ZCF3 SKP1 "S-phase kinase-associated protein 1" [Bos taurus (taxid:9913)]

 Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 22/43 (51%), Positives = 35/43 (81%)

Query:    33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
             L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct:   110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152

GO:0005829 "cytosol" evidence=ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0035518 "histone H2A monoubiquitination" evidence=IEA

GO:0031519 "PcG protein complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|E2RRW0 SKP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 22/43 (51%), Positives = 35/43 (81%)

Query:    33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
             L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct:   110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152

GO:0035518 "histone H2A monoubiquitination" evidence=IEA

GO:0031519 "PcG protein complex" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|F8W8N3 SKP1 "S-phase kinase-associated protein 1" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 22/43 (51%), Positives = 35/43 (81%)

Query:    33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
             L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct:   110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|P63208 SKP1 "S-phase kinase-associated protein 1" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 22/43 (51%), Positives = 35/43 (81%)

Query:    33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
             L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct:   110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152

GO:0005515 "protein binding" evidence=IPI

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0035518 "histone H2A monoubiquitination" evidence=IDA

GO:0031519 "PcG protein complex" evidence=IDA

GO:0000080 "G1 phase of mitotic cell cycle" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

UNIPROTKB|P63209 SKP1 "S-phase kinase-associated protein 1" [Cavia porcellus (taxid:10141)]

 Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 22/43 (51%), Positives = 35/43 (81%)

Query:    33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
             L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct:   110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152

GO:0005829 "cytosol" evidence=ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

UNIPROTKB|Q4R5B9 SKP1 "S-phase kinase-associated protein 1" [Macaca fascicularis (taxid:9541)]

 Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 22/43 (51%), Positives = 35/43 (81%)

Query:    33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
             L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct:   110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152

GO:0005829 "cytosol" evidence=ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LF97	ASK21_ARATH	No assigned EC number	0.6245	0.8808	0.6951	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037678001 SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (357 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	277
pfam01466	78	pfam01466, Skp1, Skp1 family, dimerisation domain	2e-10
COG5201	158	COG5201, SKP1, SCF ubiquitin ligase, SKP1 componen	3e-06

>gnl|CDD|201810 pfam01466, Skp1, Skp1 family, dimerisation domain

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 21/40 (52%), Positives = 29/40 (72%)

Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEE 72
          L +K L+DL  + +A +I+GKTPEEIRE F + +D T EE
Sbjct: 26 LNIKGLLDLACQKVADMIKGKTPEEIREIFGIENDFTPEE 65

Length = 78

>gnl|CDD|227528 COG5201, SKP1, SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 33  LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEE 72
           L++KPL+DL  + +A +I GK+PEEIRETF++ +D T EE
Sbjct: 105 LEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDFTPEE 144

Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
COG5201	158	SKP1 SCF ubiquitin ligase, SKP1 component [Posttra	99.85
KOG1724	162	consensus SCF ubiquitin ligase, Skp1 component [Po	99.84
PF01466	78	Skp1: Skp1 family, dimerisation domain; InterPro:	99.84
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	96.75
KOG3433	203	consensus Protein involved in meiotic recombinatio	88.32
COG5124	209	Protein predicted to be involved in meiotic recomb	87.26
PHA02790	480	Kelch-like protein; Provisional	80.06

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=1.1e-21  Score=167.50  Aligned_cols=62  Identities=37%  Similarity=0.569  Sum_probs=60.9

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCChHhhhccccc
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN   79 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfTpEEEeEIr~e   79 (277)
                      +|+++|++++.|||||+|++||++||+.||.||+||||+|||++|||++||||||+++|+++
T Consensus        90 vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSpeeir~tfni~ndfTpEEe~~irkE  151 (158)
T COG5201          90 VDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDFTPEEERRIRKE  151 (158)
T ss_pred             hhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence            79999999999999999999999999999999999999999999999999999999999886

>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.5e-21  Score=168.23  Aligned_cols=69  Identities=35%  Similarity=0.492  Sum_probs=63.9

Q ss_pred             cccccc-----chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCChHhhhcccccc
Q 023754           12 LFLDWY-----LITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNV   80 (277)
Q Consensus        12 ~f~Dw~-----vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfTpEEEeEIr~e~   80 (277)
                      .+..|+     +|+.+||+||.|||||+|++|+++||++||+||+||||+|||++|||++|+||||+++++++.
T Consensus        84 ~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~e~  157 (162)
T KOG1724|consen   84 DIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRKEN  157 (162)
T ss_pred             CccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhhcc
Confidence            377786     789999999999999999999999999999999999999999999999999999887877653

>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=99.84  E-value=1.6e-21  Score=147.80  Aligned_cols=63  Identities=35%  Similarity=0.487  Sum_probs=54.1

Q ss_pred             cchhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCChHhhhccccc
Q 023754           17 YLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN   79 (277)
Q Consensus        17 ~vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfTpEEEeEIr~e   79 (277)
                      .+|.+.||+|+.||+||+|++|+++||+.||++|+||||+|||++|||++|+|+||+++++.+
T Consensus        10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~~i~~e   72 (78)
T PF01466_consen   10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEEEIRKE   72 (78)
T ss_dssp             -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHHHHHHH
T ss_pred             HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            468899999999999999999999999999999999999999999999999999999998875

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....

>smart00512 Skp1 Found in Skp1 protein family

Probab=96.75  E-value=0.00066  Score=53.31  Aligned_cols=23  Identities=13%  Similarity=0.209  Sum_probs=20.4

Q ss_pred             ccccc-----chhHHHHHHHHHhhccCC
Q 023754           13 FLDWY-----LITAGFIKYQAAQISLQL   35 (277)
Q Consensus        13 f~Dw~-----vD~~~LfdLi~AANYLdI   35 (277)
                      +..|+     +|.++||+|+.|||||+|
T Consensus        77 ~~~wD~~F~~~d~~~l~dLl~AAnyL~I  104 (104)
T smart00512       77 IPTWDAEFLKIDQETLFELILAANYLDI  104 (104)
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            45576     899999999999999997

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=88.32  E-value=0.52  Score=43.16  Aligned_cols=39  Identities=28%  Similarity=0.489  Sum_probs=31.9

Q ss_pred             HHHHhhc--cCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCC
Q 023754           26 YQAAQIS--LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT   69 (277)
Q Consensus        26 Li~AANY--LdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfT   69 (277)
                      ++.|||.  =+|--|.+++|+..     |.-|.+||+.||||.||.
T Consensus       160 ~~eaanrwtDnI~il~dy~~rkf-----~~e~nqi~~~fgIPed~d  200 (203)
T KOG3433|consen  160 MAEAANRWTDNIFILIDYLYRKF-----GLEPNQIRKEFGIPEDFD  200 (203)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhc-----CCCHHHHhHhcCCCcccc
Confidence            3455654  37889999999875     789999999999999985

>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]

Probab=87.26  E-value=0.44  Score=43.58  Aligned_cols=40  Identities=28%  Similarity=0.450  Sum_probs=31.2

Q ss_pred             HHHHhhc--cCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCCh
Q 023754           26 YQAAQIS--LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTE   70 (277)
Q Consensus        26 Li~AANY--LdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfTp   70 (277)
                      .+.++|-  =+|.-|+++.|+..     +.-|+|||+.||||.||..
T Consensus       164 ~~~~~n~~tDnI~ilidy~c~kf-----~~~~~qir~~fgIPedld~  205 (209)
T COG5124         164 KKVHLNKTTDNIEILIDYLCKKF-----FLKPEQIRKEFGIPEDLDE  205 (209)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHc-----CCCHHHHHHhcCCCcchhh
Confidence            4444543  37888999888865     7889999999999999854

>PHA02790 Kelch-like protein; Provisional

Probab=80.06  E-value=1.8  Score=42.37  Aligned_cols=34  Identities=9%  Similarity=0.060  Sum_probs=29.6

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHh
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIE   51 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IK   51 (277)
                      ++.+.+.+|+.||++|+|..+++.||+.+...|.
T Consensus        88 it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~  121 (480)
T PHA02790         88 IDSHNVVNLLRASILTSVEFIIYTCINFILRDFR  121 (480)
T ss_pred             EecccHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            4566789999999999999999999999887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	277
2ast_A	159	Crystal Structure Of The Skp1-Skp2-Cks1 Complex Len		7e-07
3l2o_A	149	Structure-Based Mechanism Of Dimerization-Dependent		8e-07
1fqv_B	149	Insights Into Scf Ubiquitin Ligases From The Struct		9e-07
2e31_B	166	Structural Basis For Selection Of Glycosylated Subs		1e-06
1p22_B	145	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-06
1fs1_B	141	Insights Into Scf Ubiquitin Ligases From The Struct		1e-05
2p1m_A	160	Tir1-ask1 Complex Structure Length = 160		3e-05
3mks_A	169	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-05
1nex_A	169	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		7e-05

>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent Ubiquitination By The Scffbx4 Ubiquitin Ligase Length = 149

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 34/41 (82%)
Query: 33  LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
           L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+
Sbjct: 96  LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 136

>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 149

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 34/41 (82%)
Query: 33  LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
           L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+
Sbjct: 96  LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 136

>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate By Scffbs1 Ubiquitin Ligase Length = 166

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 34/41 (82%)
Query: 33  LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
           L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+
Sbjct: 113 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 153

>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 145

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 34/41 (82%)
Query: 33  LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
           L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+
Sbjct: 92  LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 132

>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 141

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 31/38 (81%)
Query: 33  LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTE 70
           L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TE
Sbjct: 104 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTE 141

>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure Length = 160

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 29/37 (78%)
Query: 33  LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT 69
           L +K L+DLT + +A +I+GKTPEEIR TF++ +D T
Sbjct: 108 LNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFT 144

>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 33  LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
           L +KPL+D   + +A +I G++PEEIR TF++ +D T EE+
Sbjct: 116 LNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEE 156

>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 33  LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
           L +KPL+D   + +A  I G++PEEIR TF++ +D T EE+
Sbjct: 116 LNIKPLLDAGCKVVAEXIRGRSPEEIRRTFNIVNDFTPEEE 156

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	277
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	1e-11
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	4e-09
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	2e-08
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Length = 141

 Score = 60.1 bits (145), Expect = 1e-11
 Identities = 20/38 (52%), Positives = 31/38 (81%)

Query: 33  LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTE 70
           L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TE
Sbjct: 104 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTE 141

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Length = 169

 Score = 53.7 bits (128), Expect = 4e-09
 Identities = 19/43 (44%), Positives = 30/43 (69%)

Query: 33  LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
           L +KPL+D   + +A +I G++PEEIR TF++ +D T EE+  
Sbjct: 116 LNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAA 158

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Length = 160

 Score = 51.4 bits (122), Expect = 2e-08
 Identities = 23/43 (53%), Positives = 33/43 (76%)

Query: 33  LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
           L +K L+DLT + +A +I+GKTPEEIR TF++ +D T EE+ E
Sbjct: 108 LNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEE 150

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 39/305 (12%), Positives = 87/305 (28%), Gaps = 90/305 (29%)

Query: 12  LFLDWYLITAGFIKYQAAQISLQLKPLV---------DLTSR----------ALARIIEG 52
           L L +       +  +    +    P           D  +            L  IIE 
Sbjct: 306 LLLKYLDCRPQDLPREVLTTN----PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 53  K----TPEEIRETFH----LPDDLT-EEEKLEPL--NNVTDDPRIRLLNRLYARKRKELK 101
                 P E R+ F      P         L  +  + +  D  + ++N+L   K   ++
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV-VVNKL--HKYSLVE 418

Query: 102 EREKLKNVEVEEEHVDERSVDDLLSFINGGNGDSKGIKTNKNKKKNRRRKDQ---LKDSS 158
           ++ K   + +   +++ +                  +K       +R   D     K   
Sbjct: 419 KQPKESTISIPSIYLELK------------------VKLENEYALHRSIVDHYNIPKTFD 460

Query: 159 TNNLNGNHKE---FNSLHSAFH--NGGLNDIAVSTPHK-------TSKLQCSTAVTCSPK 206
           +++L   + +   ++  H   H  N    +                 K++  +    +  
Sbjct: 461 SDDLIPPYLDQYFYS--HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518

Query: 207 MEFDD--------GEIDDDLDPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLV 258
              +           I D+ DP   E L   + DF  ++         E L   +   L+
Sbjct: 519 SILNTLQQLKFYKPYICDN-DPKY-ERLVNAILDFLPKIE--------ENLICSKYTDLL 568

Query: 259 QVSMN 263
           ++++ 
Sbjct: 569 RIALM 573

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 43/292 (14%), Positives = 82/292 (28%), Gaps = 78/292 (26%)

Query: 11  LLFLDWYLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTE 70
            L L W L++      Q   +   L+         +    E + P  +   +        
Sbjct: 64  TLRLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPIKT--EQRQPSMMTRMY-------- 112

Query: 71  EEKLEPLNNVTDD------PRIRLLNRLYARKRKELKEREKLKNVEVE-----------E 113
            E+ + L N           R++   +L    R+ L E    KNV ++            
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKL----RQALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 114 EHVDERSVDDLLSF----INGGNGDSKGIKTNKNKKKNRRRKDQLKDSSTNNLNGNHKEF 169
           +      V   + F    +N  N +S        +K       Q+  + T+  + +    
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY----QIDPNWTSRSDHSSNIK 224

Query: 170 NSLHSAFHNGGLNDIAVSTPHKTS----------------KLQCSTAVTCSPKMEFDDGE 213
             +HS      L  +  S P++                   L C   +T          +
Sbjct: 225 LRIHSI--QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR------FKQ 276

Query: 214 IDDDLDPAMKEEL----------DREVED-FARRLN---SDWPQRMQEILSL 251
           + D L  A    +            EV+    + L+    D P+ +      
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	277
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	99.91
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	99.9
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	99.88
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	99.84
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	97.43
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	97.42
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	96.36
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	92.99
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	88.64
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	87.8
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	87.21
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	85.89
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	85.11
2vpk_A	116	Myoneurin; transcription regulation, transcription	83.04
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	82.04
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	82.0
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	81.67
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	81.5
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	80.89

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=99.91  E-value=2.5e-25  Score=187.86  Aligned_cols=68  Identities=31%  Similarity=0.486  Sum_probs=64.1

Q ss_pred             ccccc-----cchhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCChHhhhccccc
Q 023754           12 LFLDW-----YLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN   79 (277)
Q Consensus        12 ~f~Dw-----~vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfTpEEEeEIr~e   79 (277)
                      .+.+|     .+|..+||+||.|||||+|++|+++||++||+||+||||||||++|||++||||||+++||++
T Consensus        90 ~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~~ir~e  162 (169)
T 3v7d_A           90 PVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRE  162 (169)
T ss_dssp             CCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHHHHTT
T ss_pred             cccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence            35556     379999999999999999999999999999999999999999999999999999999999987

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=99.90  E-value=1.1e-24  Score=181.41  Aligned_cols=70  Identities=37%  Similarity=0.502  Sum_probs=53.1

Q ss_pred             ccccccc-----cchhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCChHhhhccccc
Q 023754           10 ILLFLDW-----YLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN   79 (277)
Q Consensus        10 ~~~f~Dw-----~vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfTpEEEeEIr~e   79 (277)
                      ...+.+|     .+|..+||+|+.|||||+|++|+++||++||+||+||||+|||++|||++||||||+++||++
T Consensus        80 ~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~eEe~~ir~e  154 (160)
T 2p1m_A           80 DDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRE  154 (160)
T ss_dssp             ---------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred             cchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence            3455566     489999999999999999999999999999999999999999999999999999999999876

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=99.84  E-value=5.6e-22  Score=162.09  Aligned_cols=53  Identities=40%  Similarity=0.633  Sum_probs=45.5

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCCh
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTE   70 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfTp   70 (277)
                      +|.++||+|+.|||||+|++|+++||++||++|+||||||||++|||++||||
T Consensus        89 vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~I~~d~tp  141 (141)
T 1fs1_B           89 VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTE  141 (141)
T ss_dssp             SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC-------
T ss_pred             CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCC
Confidence            78999999999999999999999999999999999999999999999999997

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=97.43  E-value=2e-05  Score=60.76  Aligned_cols=27  Identities=11%  Similarity=-0.057  Sum_probs=23.9

Q ss_pred             cccccccccchhHHHHHHHHHhhccCC
Q 023754            9 SILLFLDWYLITAGFIKYQAAQISLQL   35 (277)
Q Consensus         9 s~~~f~Dw~vD~~~LfdLi~AANYLdI   35 (277)
                      +...+.+|.+|+++||+|+.|||||+|
T Consensus        70 ~~~~i~~w~vd~~~l~eLi~AAnyLdI   96 (96)
T 2fnj_C           70 SSTEIPEFPIAPEIALELLMAANFLDC   96 (96)
T ss_dssp             CCSCCCCCCCCTTTHHHHHHHHHHHTC
T ss_pred             CcccCCCcccCHHHHHHHHHHHHHhCc
Confidence            445677899999999999999999997

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=97.42  E-value=2.4e-05  Score=60.68  Aligned_cols=25  Identities=12%  Similarity=-0.043  Sum_probs=22.7

Q ss_pred             cccccccchhHHHHHHHHHhhccCC
Q 023754           11 LLFLDWYLITAGFIKYQAAQISLQL   35 (277)
Q Consensus        11 ~~f~Dw~vD~~~LfdLi~AANYLdI   35 (277)
                      ..+.+|.+|+++||+|+.|||||+|
T Consensus        75 ~~i~~w~vd~~~lfeLi~AAnyLdI   99 (99)
T 1hv2_A           75 DEIPEFEIPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             SSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred             ccCCCccCCHHHHHHHHHHHHHhCc
Confidence            4567799999999999999999997

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=96.36  E-value=0.00087  Score=51.04  Aligned_cols=25  Identities=8%  Similarity=-0.067  Sum_probs=22.2

Q ss_pred             cccccccchhHHHHHHHHHhhccCC
Q 023754           11 LLFLDWYLITAGFIKYQAAQISLQL   35 (277)
Q Consensus        11 ~~f~Dw~vD~~~LfdLi~AANYLdI   35 (277)
                      ....+|++|.+.||+|+.|||||+.
T Consensus        73 ~~i~~~~i~~~~l~eLl~AAnyL~~   97 (97)
T 4ajy_C           73 TEIPEFPIAPEIALELLMAANFLDC   97 (97)
T ss_dssp             SCCCCCCCCGGGHHHHHHHHHHHTC
T ss_pred             CCCCcCcCCHHHHHHHHHHHhhhCC
Confidence            4567889999999999999999983

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=92.99  E-value=0.024  Score=44.40  Aligned_cols=40  Identities=15%  Similarity=0.109  Sum_probs=27.7

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHH
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEE   57 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEE   57 (277)
                      ++.+.+.+|+.||++|+|..|.++|++.+...+.|++|..
T Consensus        87 i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~~~~~  126 (135)
T 2yy9_A           87 LTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQSG  126 (135)
T ss_dssp             CCTTTHHHHHHHHHHTTCHHHHHHHHHCCC----------
T ss_pred             CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCCCCCC
Confidence            4557799999999999999999999999999999887753

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=88.64  E-value=0.31  Score=36.98  Aligned_cols=33  Identities=15%  Similarity=0.054  Sum_probs=29.3

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRALARII   50 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~I   50 (277)
                      ++.+.+.+|+.||++|+|++|.++|+..+..+|
T Consensus        89 ~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~I  121 (121)
T 1buo_A           89 AKAEDLDDLLYAAEILEIEYLEEQCLKMLETIQ  121 (121)
T ss_dssp             CCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence            456789999999999999999999999998765

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=87.80  E-value=0.29  Score=37.90  Aligned_cols=31  Identities=23%  Similarity=0.175  Sum_probs=26.4

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRALAR   48 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~   48 (277)
                      ++.+.+.+|+.||++|+|..|.++|++++.+
T Consensus        87 i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~  117 (119)
T 3m5b_A           87 LQPGELRPLQEAARALGVQSLEEACWRARGD  117 (119)
T ss_dssp             ECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             cCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            4567899999999999999999999998754

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=87.21  E-value=0.41  Score=35.12  Aligned_cols=32  Identities=13%  Similarity=-0.008  Sum_probs=28.3

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRALARI   49 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~   49 (277)
                      ++.+.+.+|+.||++++++.|.++|++.+...
T Consensus        77 ~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~  108 (109)
T 2vkp_A           77 LEADTVLATLYAAKKYIVPALAKACVNFLETS  108 (109)
T ss_dssp             CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence            45578899999999999999999999998764

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=85.89  E-value=0.86  Score=35.74  Aligned_cols=42  Identities=19%  Similarity=0.052  Sum_probs=34.2

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHH
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIR   59 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIR   59 (277)
                      ++...+.+|+.||++++|+.|.+.|++.+...+...+.-++-
T Consensus       100 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~  141 (172)
T 3htm_A          100 NLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEIL  141 (172)
T ss_dssp             TGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHH
T ss_pred             CcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            445678999999999999999999999998777665554443

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=85.11  E-value=0.49  Score=35.91  Aligned_cols=30  Identities=13%  Similarity=0.082  Sum_probs=26.5

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHHH
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRALA   47 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA   47 (277)
                      ++.+.+.+|+.||++|+|+.|.++|++.++
T Consensus        88 i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~  117 (119)
T 2q81_A           88 LSPENVDDVLAVATFLQMQDIITACHALKS  117 (119)
T ss_dssp             CCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            445679999999999999999999998874

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=83.04  E-value=0.78  Score=34.29  Aligned_cols=30  Identities=13%  Similarity=0.060  Sum_probs=26.3

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHHH
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRALA   47 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA   47 (277)
                      ++.+.+.+|+.||++|+|+.|.++|++.+.
T Consensus        86 ~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~  115 (116)
T 2vpk_A           86 LDSWNVKEIHQAADYLKVEEVVTKCKIKME  115 (116)
T ss_dssp             CCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            445689999999999999999999998763

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=82.04  E-value=1.1  Score=33.58  Aligned_cols=29  Identities=17%  Similarity=0.142  Sum_probs=25.6

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHH
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRAL   46 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~I   46 (277)
                      ++.+.+.+|+.||++++|++|.++|++.+
T Consensus        91 ~~~~~~~~ll~~A~~~~i~~L~~~C~~~L  119 (120)
T 2if5_A           91 VSTANVGDILSAARLLEIPAVSHVCADLL  119 (120)
T ss_dssp             CCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence            34578999999999999999999998865

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=82.00  E-value=0.34  Score=37.73  Aligned_cols=34  Identities=9%  Similarity=-0.106  Sum_probs=29.0

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHh
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIE   51 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IK   51 (277)
                      ++.+.+.+|+.||++|+|..|.+.|++.+...|.
T Consensus       101 i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~  134 (138)
T 2z8h_A          101 LSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFL  134 (138)
T ss_dssp             CCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCS
T ss_pred             cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence            4556799999999999999999999998865544

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=81.67  E-value=1.4  Score=37.85  Aligned_cols=42  Identities=12%  Similarity=0.034  Sum_probs=35.2

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHH
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIR   59 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIR   59 (277)
                      ++...+.+|+.||++|+|.+|.+.|+..+...+.-.+.-.|.
T Consensus       107 i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~  148 (279)
T 3i3n_A          107 VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIH  148 (279)
T ss_dssp             EETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHH
Confidence            455679999999999999999999999998887666655554

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=81.50  E-value=0.59  Score=35.66  Aligned_cols=38  Identities=16%  Similarity=0.010  Sum_probs=25.4

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCH
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTP   55 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSp   55 (277)
                      +....+.+|+.||++++|+.|.++|+..+...+...+.
T Consensus        91 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~  128 (145)
T 4eoz_A           91 NLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENA  128 (145)
T ss_dssp             TGGGTHHHHHHHHHHTTCHHHHHHHHCC----------
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHH
Confidence            34567889999999999999999999999877654433

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=80.89  E-value=1.1  Score=33.98  Aligned_cols=30  Identities=20%  Similarity=0.303  Sum_probs=26.7

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHHH
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRALA   47 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA   47 (277)
                      ++.+.+.+|+.||++|+|..|.++|++.+.
T Consensus        95 ~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~  124 (127)
T 1r29_A           95 LREGNIMAVMATAMYLQMEHVVDTCRKFIK  124 (127)
T ss_dssp             CCTTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            455789999999999999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	277
d1nexa1	70	a.157.1.1 (A:116-185) Centromere DNA-binding prote	3e-12
d1fs1b1	55	a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45,	2e-09

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 70

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.5 bits (142), Expect = 3e-12
 Identities = 19/43 (44%), Positives = 30/43 (69%)

Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
          L +KPL+D   + +A +I G++PEEIR TF++ +D T EE+  
Sbjct: 26 LNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAA 68

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (120), Expect = 2e-09
 Identities = 18/35 (51%), Positives = 27/35 (77%)

Query: 29 AQISLQLKPLVDLTSRALARIIEGKTPEEIRETFH 63
          A   L +K L+D+T + +A +I+GKTPEEIR+TF+
Sbjct: 21 AANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	277
d1nexa1	70	Centromere DNA-binding protein complex Cbf3 subuni	99.92
d1fs1b1	55	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	99.79
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	97.05
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	96.04
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	86.42
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	84.1

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=9.8e-26  Score=167.76  Aligned_cols=60  Identities=33%  Similarity=0.508  Sum_probs=58.6

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCChHhhhccc
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPL   77 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfTpEEEeEIr   77 (277)
                      +|..+||+|+.|||||+|++|+++||++||.+|+||||+|||++|||++||||||+++||
T Consensus        11 ~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ikgkt~eeiR~~f~I~~D~t~eEe~~ir   70 (70)
T d1nexa1          11 VDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIR   70 (70)
T ss_dssp             SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHTCC
T ss_pred             cCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHhcC
Confidence            789999999999999999999999999999999999999999999999999999999985

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4e-20  Score=132.12  Aligned_cols=46  Identities=39%  Similarity=0.605  Sum_probs=45.1

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcC
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFH   63 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~Fg   63 (277)
                      +|..+||+|+.|||||+|++|+++||++||++|+||||||||++||
T Consensus        10 ~d~~~Lf~Li~AAnyL~I~~Lldl~c~~vA~~ikgKt~eeiR~~fn   55 (55)
T d1fs1b1          10 VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN   55 (55)
T ss_dssp             SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC
T ss_pred             cCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcCCCHHHHHHHhC
Confidence            7899999999999999999999999999999999999999999997

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.05  E-value=4.7e-05  Score=57.03  Aligned_cols=25  Identities=12%  Similarity=-0.043  Sum_probs=22.0

Q ss_pred             cccccccchhHHHHHHHHHhhccCC
Q 023754           11 LLFLDWYLITAGFIKYQAAQISLQL   35 (277)
Q Consensus        11 ~~f~Dw~vD~~~LfdLi~AANYLdI   35 (277)
                      ..+.+|++|+.+||+|+.|||||+|
T Consensus        75 ~~~~efdvd~~~l~eLi~AAnyLdI   99 (99)
T d1hv2a_          75 DEIPEFEIPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             SSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred             ccCCCCCCCHHHHHHHHHHHhhhCC
Confidence            4455688999999999999999997

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.00089  Score=49.78  Aligned_cols=28  Identities=11%  Similarity=-0.031  Sum_probs=21.6

Q ss_pred             cCcccccccccchhHHHHHHHHHhhccC
Q 023754            7 KGSILLFLDWYLITAGFIKYQAAQISLQ   34 (277)
Q Consensus         7 ~gs~~~f~Dw~vD~~~LfdLi~AANYLd   34 (277)
                      +++.....+|+++.+.||+|+.||||||
T Consensus        68 ~~~~~~~~~fdi~~~~l~eLi~AAnyLd   95 (96)
T d2c9wc1          68 TNSSTEIPEFPIAPEIALELLMAANFLD   95 (96)
T ss_dssp             C----CCCCCCCCHHHHHHHHHHHHHHT
T ss_pred             cCCcCCCCCCcCCHHHHHHHHHHHhhhc
Confidence            4555666778899999999999999997

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.42  E-value=0.22  Score=37.08  Aligned_cols=29  Identities=14%  Similarity=0.039  Sum_probs=26.1

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHH
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRAL   46 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~I   46 (277)
                      ++.+.+.+|+.||++|+|++|.+.|++.+
T Consensus        89 l~~~~v~~ll~~A~~l~~~~L~~~C~~~L  117 (121)
T d1buoa_          89 AKAEDLDDLLYAAEILEIEYLEEQCLKML  117 (121)
T ss_dssp             CCGGGHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            45667899999999999999999999877

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.10  E-value=0.31  Score=35.74  Aligned_cols=29  Identities=21%  Similarity=0.317  Sum_probs=25.9

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHH
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRAL   46 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~I   46 (277)
                      ++.+.+.+|+.||.+|+|+.|.+.|.+.+
T Consensus        91 i~~~~v~~ll~~A~~l~i~~L~~~C~~~L  119 (122)
T d1r29a_          91 LREGNIMAVMATAMYLQMEHVVDTCRKFI  119 (122)
T ss_dssp             CCTTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHCcHHHHHHHHHHH
Confidence            45678999999999999999999998875