Citrus Sinensis ID: 023760

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKEA
ccccccHHHHHHHHHHccccccccccccccccccccccccccccEEEcccccccccEEEEEEEEcccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccEEEEcHHHHHHHHHHHHHHHHccccEEEEEEcccccEEEEEccccHHHHHHHHHHccccccccccccccccccccHHcccccccccccccccccccccccccccccccccEEEEEccccccEEccccccccccccccccccc
ccccccHHHHHHHHHcccccHHHHHcccEEEEEcccccccccccEEEccccccccccEEEEEEEEcccccccccccccccHccHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHccccccEEEccccccEEEccHHHHHHHHHHHHHHHHccccEEEEEEcccccEEEEEccccHHHHHHHHHHHHcccccccccccEEccccccccHcccccccccccccccHHHHHccccccccccEEEEEEccccccEEcccccHHcccccccccccc
MNLKENQSQLSAIARQGSGSACRSLFGGFVKWilgkegngsdslaVQLVDEEHWNDLVIIIAVVSSrqketssttgmreSVETSLLLQHRAKEVVPKRIVQMEEAiqnhdfssfaqltcadsnqfhavcldtsppifymndtsHRIISYVERwnrsvgspqvaytfdagpnaVLIARNRKIATELLQRLLfffppnsetdlnsyvlgdksilrdagidgmkdiealplppeinnisaqkysgdvnyfictrpgggpvllsddskallnpksglpkea
MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVssrqketssttgmresvetslllqhrakEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSddskallnpksglpkea
MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKEA
********************ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVV*********************LLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVL*******************
******QSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSR*************VETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMK**************SAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLP***
*******************SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVS*****************TSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKEA
****ENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSR*************VETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKS*L****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKEA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query277 2.2.26 [Sep-21-2011]
P53602400 Diphosphomevalonate decar yes no 0.916 0.635 0.470 1e-60
Q5U403400 Diphosphomevalonate decar yes no 0.920 0.637 0.453 2e-60
Q99JF5401 Diphosphomevalonate decar yes no 0.902 0.623 0.466 2e-59
Q62967401 Diphosphomevalonate decar yes no 0.902 0.623 0.459 4e-59
Q0P570400 Diphosphomevalonate decar yes no 0.916 0.635 0.448 3e-58
Q54YQ9391 Diphosphomevalonate decar yes no 0.916 0.649 0.427 6e-55
O13963393 Diphosphomevalonate decar yes no 0.877 0.618 0.436 2e-53
Q6BY07388 Diphosphomevalonate decar yes no 0.891 0.636 0.450 4e-53
P32377396 Diphosphomevalonate decar yes no 0.913 0.638 0.428 2e-52
Q751D8397 Diphosphomevalonate decar yes no 0.924 0.644 0.433 1e-51
>sp|P53602|MVD1_HUMAN Diphosphomevalonate decarboxylase OS=Homo sapiens GN=MVD PE=1 SV=1 Back     alignment and function desciption
 Score =  233 bits (593), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 128/272 (47%), Positives = 167/272 (61%), Gaps = 18/272 (6%)

Query: 7   QSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSS 66
           +S LS +AR+GSGSACRSL+GGFV+W +G++ +G DS+A Q+  E HW +L ++I VVS+
Sbjct: 145 ESDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSIARQVAPESHWPELRVLILVVSA 204

Query: 67  RQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFH 126
            +K T ST GMR SVETS LL+ RA+ VVP R+ +M   I+  DF SFAQLT  DSNQFH
Sbjct: 205 EKKLTGSTVGMRASVETSPLLRFRAESVVPARMAEMARCIRERDFPSFAQLTMKDSNQFH 264

Query: 127 AVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELL 186
           A CLDT PPI Y+N  S RII  V R+N   G  +VAYTFDAGPNAV+   +  +A E +
Sbjct: 265 ATCLDTFPPISYLNAISWRIIHLVHRFNAHHGDTKVAYTFDAGPNAVIFTLDDTVA-EFV 323

Query: 187 QRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEIN-NISAQKYSGDVN 245
             +   FPP S                D  + G++ +   PL  E+   ++ +   G V 
Sbjct: 324 AAVWHGFPPGSNG--------------DTFLKGLQ-VRPAPLSAELQAALAMEPTPGGVK 368

Query: 246 YFICTRPGGGPVLLSDDSKALLNPKSGLPKEA 277
           Y I T+ G GP +L D    LL P  GLPK A
Sbjct: 369 YIIVTQVGPGPQILDDPCAHLLGP-DGLPKPA 399
Performs the first committed step in the biosynthesis of isoprenes.
Homo sapiens (taxid: 9606)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 3
>sp|Q5U403|MVD1_DANRE Diphosphomevalonate decarboxylase OS=Danio rerio GN=mvd PE=2 SV=1 Back     alignment and function description
>sp|Q99JF5|MVD1_MOUSE Diphosphomevalonate decarboxylase OS=Mus musculus GN=Mvd PE=1 SV=2 Back     alignment and function description
>sp|Q62967|MVD1_RAT Diphosphomevalonate decarboxylase OS=Rattus norvegicus GN=Mvd PE=2 SV=1 Back     alignment and function description
>sp|Q0P570|MVD1_BOVIN Diphosphomevalonate decarboxylase OS=Bos taurus GN=MVD PE=2 SV=1 Back     alignment and function description
>sp|Q54YQ9|MVD1_DICDI Diphosphomevalonate decarboxylase OS=Dictyostelium discoideum GN=mvd PE=3 SV=1 Back     alignment and function description
>sp|O13963|MVD1_SCHPO Diphosphomevalonate decarboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mvd1 PE=3 SV=1 Back     alignment and function description
>sp|Q6BY07|MVD1_DEBHA Diphosphomevalonate decarboxylase OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=MVD1 PE=3 SV=2 Back     alignment and function description
>sp|P32377|MVD1_YEAST Diphosphomevalonate decarboxylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MVD1 PE=1 SV=2 Back     alignment and function description
>sp|Q751D8|MVD1_ASHGO Diphosphomevalonate decarboxylase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MVD1 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query277
356575484 421 PREDICTED: diphosphomevalonate decarboxy 0.989 0.650 0.815 1e-132
255560311 415 diphosphomevalonate decarboxylase, putat 0.985 0.657 0.807 1e-131
164604978 415 diphosphomevelonate decarboxylase [Hevea 0.985 0.657 0.807 1e-131
16417950 415 mevalonate disphosphate decarboxylase [H 0.985 0.657 0.807 1e-131
356536371 420 PREDICTED: diphosphomevalonate decarboxy 0.989 0.652 0.807 1e-130
224110186 416 predicted protein [Populus trichocarpa] 0.985 0.656 0.814 1e-130
225464152 422 PREDICTED: diphosphomevalonate decarboxy 0.992 0.651 0.797 1e-130
157042753 406 mevalonate diphosphate decarboxylase [Ni 0.992 0.677 0.793 1e-129
343466161 418 diphosphomevalonate decarboxylase [Sirai 0.985 0.653 0.810 1e-129
224097622 416 predicted protein [Populus trichocarpa] 0.985 0.656 0.8 1e-128
>gi|356575484|ref|XP_003555870.1| PREDICTED: diphosphomevalonate decarboxylase-like [Glycine max] Back     alignment and taxonomy information
 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 225/276 (81%), Positives = 257/276 (93%), Gaps = 2/276 (0%)

Query: 1   MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVII 60
           MN+KE++SQLSAIARQGSGSACRSLFGGFVKWI+GKE NGSDSLAVQL DE+HW+DLVI+
Sbjct: 147 MNVKEDESQLSAIARQGSGSACRSLFGGFVKWIMGKEDNGSDSLAVQLTDEKHWDDLVIV 206

Query: 61  IAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCA 120
           IAVVSSRQKETSSTTGMRESVETSLLLQHRAKE+VPKRI+QMEEAI+N DF+SF+QLTCA
Sbjct: 207 IAVVSSRQKETSSTTGMRESVETSLLLQHRAKEIVPKRILQMEEAIKNRDFASFSQLTCA 266

Query: 121 DSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRK 180
           DSNQFHAVCLDT PPIFYMNDTSHRIIS VE+WNRS  +PQVAYTFDAGPNAVLIARNRK
Sbjct: 267 DSNQFHAVCLDTCPPIFYMNDTSHRIISIVEKWNRSEEAPQVAYTFDAGPNAVLIARNRK 326

Query: 181 IATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEI-NNISAQK 239
            AT L+QRLL++FPPNS+ DL+SY++GDKSI +DAGI+G++D+EALP PPEI +NI +QK
Sbjct: 327 AATSLIQRLLYYFPPNSD-DLSSYIIGDKSIAKDAGINGIQDVEALPPPPEIKDNIPSQK 385

Query: 240 YSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK 275
           Y GDV+YFICTRPG GPVLLSD  +ALLN ++GLPK
Sbjct: 386 YKGDVSYFICTRPGRGPVLLSDSIQALLNDETGLPK 421

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255560311|ref|XP_002521172.1| diphosphomevalonate decarboxylase, putative [Ricinus communis] gi|223539619|gb|EEF41203.1| diphosphomevalonate decarboxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|164604978|dbj|BAF98285.1| diphosphomevelonate decarboxylase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|16417950|gb|AAL18927.1|AF429386_1 mevalonate disphosphate decarboxylase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|356536371|ref|XP_003536712.1| PREDICTED: diphosphomevalonate decarboxylase-like [Glycine max] Back     alignment and taxonomy information
>gi|224110186|ref|XP_002315441.1| predicted protein [Populus trichocarpa] gi|222864481|gb|EEF01612.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225464152|ref|XP_002266399.1| PREDICTED: diphosphomevalonate decarboxylase [Vitis vinifera] gi|296087980|emb|CBI35263.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|157042753|gb|ABV02028.1| mevalonate diphosphate decarboxylase [Nicotiana langsdorffii x Nicotiana sanderae] Back     alignment and taxonomy information
>gi|343466161|gb|AEM42974.1| diphosphomevalonate decarboxylase [Siraitia grosvenorii] Back     alignment and taxonomy information
>gi|224097622|ref|XP_002311015.1| predicted protein [Populus trichocarpa] gi|222850835|gb|EEE88382.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query277
TAIR|locus:2080265419 AT3G54250 [Arabidopsis thalian 0.992 0.656 0.757 2.9e-112
TAIR|locus:2064092412 MVD1 "mevalonate diphosphate d 0.967 0.650 0.721 4.6e-105
UNIPROTKB|P53602400 MVD "Diphosphomevalonate decar 0.916 0.635 0.481 4.2e-56
ZFIN|ZDB-GENE-041114-127400 zgc:100824 "zgc:100824" [Danio 0.920 0.637 0.457 1.8e-55
MGI|MGI:2179327401 Mvd "mevalonate (diphospho) de 0.909 0.628 0.477 3.7e-55
RGD|621292401 Mvd "mevalonate (diphospho) de 0.909 0.628 0.462 3.7e-55
UNIPROTKB|Q642E5401 Mvd "Mevalonate (Diphospho) de 0.909 0.628 0.462 3.7e-55
UNIPROTKB|E2QYJ9400 MVD "Uncharacterized protein" 0.913 0.632 0.461 7.8e-55
UNIPROTKB|Q0P570400 MVD "Diphosphomevalonate decar 0.913 0.632 0.457 1.6e-54
FB|FBgn0030683388 CG8239 [Drosophila melanogaste 0.888 0.634 0.446 4.4e-52
TAIR|locus:2080265 AT3G54250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
 Identities = 209/276 (75%), Positives = 245/276 (88%)

Query:     1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVII 60
             MN+ E+ S LSAIARQGSGSACRSLFGGFVKW +G + +GSDS+AVQL DE+HW+DLVII
Sbjct:   144 MNVDEDPSHLSAIARQGSGSACRSLFGGFVKWTMGSKEDGSDSVAVQLADEKHWDDLVII 203

Query:    61 IAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCA 120
             IAVVSSRQKETSST+GMRESVETSLLLQHRAKEVVPKRI+QMEEAI+N DF+SF QLTC 
Sbjct:   204 IAVVSSRQKETSSTSGMRESVETSLLLQHRAKEVVPKRILQMEEAIKNRDFASFTQLTCT 263

Query:   121 DSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRK 180
             DSNQFHAVCLDTSPPIFYMNDTSHRIIS VE+WNRS G+PQVAYTFDAGPNAVLIARNRK
Sbjct:   264 DSNQFHAVCLDTSPPIFYMNDTSHRIISLVEKWNRSEGTPQVAYTFDAGPNAVLIARNRK 323

Query:   181 IATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEI-NNISAQK 239
             +A +LLQ LL++FPP S+TD+ SYV+GD SIL++AG+DG   +E L  PPEI +NI +Q 
Sbjct:   324 VAVQLLQGLLYYFPPKSDTDMKSYVVGDNSILKEAGLDGASGVENLQPPPEIKDNIGSQD 383

Query:   240 YSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK 275
               G+V+YFICTRPG GP++L D ++ALL+P++GLPK
Sbjct:   384 QKGEVSYFICTRPGKGPIVLHDQTQALLDPETGLPK 419
GO:0004163 "diphosphomevalonate decarboxylase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0008299 "isoprenoid biosynthetic process" evidence=IEA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA
TAIR|locus:2064092 MVD1 "mevalonate diphosphate decarboxylase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P53602 MVD "Diphosphomevalonate decarboxylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-127 zgc:100824 "zgc:100824" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:2179327 Mvd "mevalonate (diphospho) decarboxylase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621292 Mvd "mevalonate (diphospho) decarboxylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q642E5 Mvd "Mevalonate (Diphospho) decarboxylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYJ9 MVD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P570 MVD "Diphosphomevalonate decarboxylase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0030683 CG8239 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.1.1.330.824
3rd Layer4.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0106013901
diphosphomevalonate decarboxylase (EC-4.1.1.33) (417 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00060040
SubName- Full=Putative uncharacterized protein; (342 aa)
   • •• 0.946
IDI
SubName- Full=Putative chloroplast isopentenyl diphosphate isomerase; EC=5.3.3.2; Flags- Fragme [...] (234 aa)
•  • •• 0.939
estExt_Genewise1_v1.C_LG_III0996
hypothetical protein (493 aa)
     •• 0.904
estExt_Genewise1_v1.C_290342
SubName- Full=Putative uncharacterized protein; (496 aa)
     •  0.900
gw1.XV.832.1
hypothetical protein (236 aa)
     •  0.899
gw1.VII.3333.1
annotation not avaliable (311 aa)
     •  0.899
gw1.IV.3487.1
hypothetical protein (293 aa)
     •  0.899
gw1.II.860.1
hypothetical protein (306 aa)
     •  0.899
grail3.0137000601
hypothetical protein (134 aa)
     •  0.899
grail3.0045022601
hypothetical protein (259 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query277
PLN02407343 PLN02407, PLN02407, diphosphomevalonate decarboxyl 1e-145
COG3407329 COG3407, MVD1, Mevalonate pyrophosphate decarboxyl 4e-51
TIGR01240305 TIGR01240, mevDPdecarb, diphosphomevalonate decarb 1e-49
>gnl|CDD|178029 PLN02407, PLN02407, diphosphomevalonate decarboxylase Back     alignment and domain information 
 Score =  411 bits (1057), Expect = e-145
 Identities = 168/206 (81%), Positives = 192/206 (93%), Gaps = 1/206 (0%)

Query: 1   MNLKEN-QSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVI 59
           MN+KE+   +LSAIARQGSGSACRSL+GGFVKW +GK+ +GSDS+AVQL DE+HW+DLVI
Sbjct: 138 MNVKEDFPGELSAIARQGSGSACRSLYGGFVKWNMGKKEDGSDSIAVQLADEKHWDDLVI 197

Query: 60  IIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTC 119
           IIAVVSSRQKETSST+GMRESVETS LLQHRAKEVVPKRI+QMEEAI+N DF+SFA+LTC
Sbjct: 198 IIAVVSSRQKETSSTSGMRESVETSPLLQHRAKEVVPKRILQMEEAIKNRDFASFAKLTC 257

Query: 120 ADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNR 179
           ADSNQFHA CLDTSPPIFYMNDTS RIIS VE+WNRS G+PQVAYTFDAGPNAVLIA NR
Sbjct: 258 ADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTFDAGPNAVLIALNR 317

Query: 180 KIATELLQRLLFFFPPNSETDLNSYV 205
           K+A +LLQRLL++FPP+S+TDL+SYV
Sbjct: 318 KVAAQLLQRLLYYFPPSSDTDLSSYV 343

Length = 343
>gnl|CDD|225941 COG3407, MVD1, Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|130307 TIGR01240, mevDPdecarb, diphosphomevalonate decarboxylase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 277
KOG2833395 consensus Mevalonate pyrophosphate decarboxylase [ 100.0
PLN02407343 diphosphomevalonate decarboxylase 100.0
TIGR01240305 mevDPdecarb diphosphomevalonate decarboxylase. Alt 100.0
COG3407329 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid 100.0
PRK01212301 homoserine kinase; Provisional 98.62
PF0854485 GHMP_kinases_C: GHMP kinases C terminal ; InterPro 98.22
TIGR00549273 mevalon_kin mevalonate kinase. Paracoccus exhibits 98.17
PRK00128286 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 98.05
TIGR01220358 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ 98.03
PRK14611275 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.93
TIGR00191302 thrB homoserine kinase. P.aeruginosa homoserine ki 97.79
PRK03926302 mevalonate kinase; Provisional 97.27
PTZ00298328 mevalonate kinase; Provisional 97.25
PRK02534312 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.19
PLN02451370 homoserine kinase 96.9
PRK03817351 galactokinase; Provisional 96.66
TIGR00144324 beta_RFAP_syn beta-RFAP synthase. This protein fam 96.46
PRK03188300 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 96.2
PRK01123282 shikimate kinase; Provisional 96.07
TIGR01920261 Shik_kin_archae shikimate kinase. This model repre 96.02
PRK00555363 galactokinase; Provisional 95.76
COG0083299 ThrB Homoserine kinase [Amino acid transport and m 95.61
PRK05322387 galactokinase; Provisional 94.98
COG1907312 Predicted archaeal sugar kinases [General function 94.33
TIGR00154293 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin 93.7
PRK13412974 fkp bifunctional fucokinase/L-fucose-1-P-guanylylt 92.8
TIGR00131386 gal_kin galactokinase. The galactokinases found by 92.42
PRK14613297 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 91.69
PTZ00299336 homoserine kinase; Provisional 91.12
COG1577307 ERG12 Mevalonate kinase [Lipid metabolism] 90.89
PRK00343271 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 88.06
PRK05101382 galactokinase; Provisional 87.88
PRK14614280 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 86.9
PRK14616287 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 85.88
PRK14608290 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 81.83
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6.6e-90  Score=642.18  Aligned_cols=257  Identities=56%  Similarity=0.885  Sum_probs=237.4

Q ss_pred             CCCCCChHHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhhh
Q 023760            1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES   80 (277)
Q Consensus         1 ~~l~~~~~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~t   80 (277)
                      |||+.++++||+|||+||||||||+|||||.|++|+.+||+||+|+|++|+.|||+|+++|+|||+.+|+++||+||+++
T Consensus       138 y~l~~~~~els~iAR~GSGSACRSl~GG~V~W~mG~~~DGsDsvAvq~~p~~~W~el~ililVvs~~~K~t~ST~GM~~s  217 (395)
T KOG2833|consen  138 YGLDDSPEELSRIARQGSGSACRSLYGGFVAWEMGELDDGSDSVAVQIAPSSHWPELRILILVVSDAKKKTGSTEGMRRS  217 (395)
T ss_pred             hCCCCCHHHHHHHHhccCchhhhhhhcceeEeecccccCCCceeEEEeccccCCCceEEEEEEeccccccccccHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCCC
Q 023760           81 VETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSP  160 (277)
Q Consensus        81 v~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~  160 (277)
                      |+||.||++|++++||+||.+|++||++|||+.|+++||+|||||||+||||+|||+||||+|++||++||+||+..|.+
T Consensus       218 veTS~L~qhRi~~vVP~Ri~~m~eaI~~rDF~~FA~lTm~DSNqFHAvclDT~PPI~YmNd~S~~iI~~vh~~N~~~G~t  297 (395)
T KOG2833|consen  218 VETSQLLQHRIESVVPQRIQQMREAIRERDFESFAKLTMKDSNQFHAVCLDTFPPIFYLNDTSWRIISLVHEFNASAGGT  297 (395)
T ss_pred             HHHhHHHHHHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHhcchhhhhhhhccCCCeEEeccchHHHHHHHHHHHhccCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeccCCCeEEeeecccCHHHHHHHHHhcCCCCCCcCccccccCccchhhhccCCCcccccCCCCCcccc-cccccc
Q 023760          161 QVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEIN-NISAQK  239 (277)
Q Consensus       161 ~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~g~~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~  239 (277)
                      +|+||||||||++||+++ ++..++++.+.+.||+.++|+ ..|.+|+.+.++..+..           .+++ .+..  
T Consensus       298 ~vAYTFDAGPNAvl~~l~-e~~~~~l~~~~~~f~~~p~~d-k~y~~~~~~~~~~~~~~-----------~~~~~~l~~--  362 (395)
T KOG2833|consen  298 RVAYTFDAGPNAVLIVLE-ENVSQLLAAVLKVFPPVPGWD-KTYGKGLLEQFKVAAES-----------SSIKDSLGS--  362 (395)
T ss_pred             eEEEEecCCCceEEEEhh-hhHHHHHHHHHHhcCCCCCcc-ceeeeccccccCccccc-----------cchhhhccc--
Confidence            999999999999999996 556689999999999999887 78988865443333222           2333 4443  


Q ss_pred             CCCCcceEEEcCCCCCCeecCCCCccccCCCCCCCC
Q 023760          240 YSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK  275 (277)
Q Consensus       240 ~~~~v~~~i~T~vG~GP~~l~~~~~~Ll~~~~g~p~  275 (277)
                       .++|+|||+|+||.||+ |.+++++|||+ .|+||
T Consensus       363 -~~~vs~~I~t~vG~GP~-l~~~~~~Li~~-~GlPk  395 (395)
T KOG2833|consen  363 -QGGVSYIILTRVGGGPK-LQEQNESLIDP-SGLPK  395 (395)
T ss_pred             -cCCeeEEEEecCCCCCc-ccCchhhhcCC-CCCCC
Confidence             39999999999999999 77889999999 59997

>PLN02407 diphosphomevalonate decarboxylase Back     alignment and domain information
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase Back     alignment and domain information
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Back     alignment and domain information
>PRK01212 homoserine kinase; Provisional Back     alignment and domain information
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2 Back     alignment and domain information
>TIGR00549 mevalon_kin mevalonate kinase Back     alignment and domain information
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch Back     alignment and domain information
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00191 thrB homoserine kinase Back     alignment and domain information
>PRK03926 mevalonate kinase; Provisional Back     alignment and domain information
>PTZ00298 mevalonate kinase; Provisional Back     alignment and domain information
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PLN02451 homoserine kinase Back     alignment and domain information
>PRK03817 galactokinase; Provisional Back     alignment and domain information
>TIGR00144 beta_RFAP_syn beta-RFAP synthase Back     alignment and domain information
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK01123 shikimate kinase; Provisional Back     alignment and domain information
>TIGR01920 Shik_kin_archae shikimate kinase Back     alignment and domain information
>PRK00555 galactokinase; Provisional Back     alignment and domain information
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK05322 galactokinase; Provisional Back     alignment and domain information
>COG1907 Predicted archaeal sugar kinases [General function prediction only] Back     alignment and domain information
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Back     alignment and domain information
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional Back     alignment and domain information
>TIGR00131 gal_kin galactokinase Back     alignment and domain information
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PTZ00299 homoserine kinase; Provisional Back     alignment and domain information
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK05101 galactokinase; Provisional Back     alignment and domain information
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query277
3d4j_A400 Crystal Structure Of Human Mevalonate Diphosphate D 1e-61
3f0n_A414 Mus Musculus Mevalonate Pyrophosphate Decarboxylase 4e-60
1fi4_A416 The X-Ray Crystal Structure Of Mevalonate 5-Diphosp 1e-49
2hke_A380 Mevalonate Diphosphate Decarboxylase From Trypanoso 2e-40
3qt5_A332 Crystal Structure Of Staphylococcus Epidermidis Mev 5e-19
3qt8_A332 Crystal Structure Of Mutant S192a Staphylococcus Ep 1e-18
2hk2_A331 Crystal Structure Of Mevalonate Diphosphate Decarbo 2e-18
4dpw_A332 Crystal Structure Of Staphylococcus Epidermidis D28 5e-18
3lto_A323 Crystal Structure Of A Mevalonate Diphosphate Decar 2e-11
>pdb|3D4J|A Chain A, Crystal Structure Of Human Mevalonate Diphosphate Decarboxylase Length = 400 Back     alignment and structure 
Iteration: 1

 Score =  233 bits (593), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 128/272 (47%), Positives = 167/272 (61%), Gaps = 18/272 (6%)
Query: 7   QSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSS 66
           +S LS +AR+GSGSACRSL+GGFV+W +G++ +G DS+A Q+  E HW +L ++I VVS+
Sbjct: 145 ESDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSIARQVAPESHWPELRVLILVVSA 204
Query: 67  RQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFH 126
            +K T ST GMR SVETS LL+ RA+ VVP R+ +M   I+  DF SFAQLT  DSNQFH
Sbjct: 205 EKKLTGSTVGMRASVETSPLLRFRAESVVPARMAEMARCIRERDFPSFAQLTMKDSNQFH 264
Query: 127 AVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELL 186
           A CLDT PPI Y+N  S RII  V R+N   G  +VAYTFDAGPNAV+   +  +A E +
Sbjct: 265 ATCLDTFPPISYLNAISWRIIHLVHRFNAHHGDTKVAYTFDAGPNAVIFTLDDTVA-EFV 323
Query: 187 QRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEIN-NISAQKYSGDVN 245
             +   FPP S                D  + G++ +   PL  E+   ++ +   G V 
Sbjct: 324 AAVWHGFPPGSNG--------------DTFLKGLQ-VRPAPLSAELQAALAMEPTPGGVK 368
Query: 246 YFICTRPGGGPVLLSDDSKALLNPKSGLPKEA 277
           Y I T+ G GP +L D    LL P  GLPK A
Sbjct: 369 YIIVTQVGPGPQILDDPCAHLLGP-DGLPKPA 399
>pdb|3F0N|A Chain A, Mus Musculus Mevalonate Pyrophosphate Decarboxylase Length = 414 Back     alignment and structure
>pdb|1FI4|A Chain A, The X-Ray Crystal Structure Of Mevalonate 5-Diphosphate Decarboxylase At 2.3 Angstrom Resolution Length = 416 Back     alignment and structure
>pdb|2HKE|A Chain A, Mevalonate Diphosphate Decarboxylase From Trypanosoma Brucei Length = 380 Back     alignment and structure
>pdb|3QT5|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate Diphosphate Decarboxylase Length = 332 Back     alignment and structure
>pdb|3QT8|A Chain A, Crystal Structure Of Mutant S192a Staphylococcus Epidermidis Mevalonate Diphosphate Decarboxylase Complexed With Inhibitor 6- Fmvapp Length = 332 Back     alignment and structure
>pdb|2HK2|A Chain A, Crystal Structure Of Mevalonate Diphosphate Decarboxylase From Staphylococcus Aureus (Monoclinic Form) Length = 331 Back     alignment and structure
>pdb|4DPW|A Chain A, Crystal Structure Of Staphylococcus Epidermidis D283a Mevalonate Diphosphate Decarboxylase Complexed With Mevalonate Diphosphate And Atpgs Length = 332 Back     alignment and structure
>pdb|3LTO|A Chain A, Crystal Structure Of A Mevalonate Diphosphate Decarboxylase From Legionella Pneumophila Length = 323 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query277
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 6e-82
3f0n_A414 Mevalonate pyrophosphate decarboxylase; cholestero 8e-82
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 2e-78
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 2e-50
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 2e-48
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 2e-44
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Length = 380 Back     alignment and structure
 Score =  250 bits (639), Expect = 6e-82
 Identities = 89/269 (33%), Positives = 144/269 (53%), Gaps = 15/269 (5%)

Query: 1   MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVII 60
           +   ++ + +S +AR GSGSACRS FGGFV W  G++ +GSD +A Q VDE HW ++ ++
Sbjct: 127 IRAFKSTTNVSMLARLGSGSACRSAFGGFVIWNKGEKPDGSDCVATQFVDETHWPEIQVM 186

Query: 61  IAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCA 120
            AV+   QK+ SST GM++S++TS L++ R  E VP+R+     AI+  DF++FA++   
Sbjct: 187 CAVLKGAQKDVSSTKGMQQSLKTSPLMKKRISETVPERMKIASRAIKARDFATFAEIAML 246

Query: 121 DSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRK 180
           +S+    +C  T P I Y  + S+ +I  V+ +N   G   +AYTFDAG N  L    ++
Sbjct: 247 ESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAGANCFLFVL-KE 305

Query: 181 IATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKY 240
              E +  L+  FP   E     +  GD+ +L        + ++ + LP E   +     
Sbjct: 306 DLPEAVAMLMEHFPTPFE----KFFFGDRELL--------EKVKVVSLPDEYKKLIDHPK 353

Query: 241 SGDVNYFICTRPGGGPVLLSDDSKALLNP 269
                  + +  G G   L   S++L+ P
Sbjct: 354 -KPFEMLLQSPVGCGVKYL-GPSESLIPP 380
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Length = 414 Back     alignment and structure
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Length = 416 Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 3qt8_A* 2hk2_A 2hk3_A Length = 332 Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Length = 323 Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Length = 317 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query277
3f0n_A414 Mevalonate pyrophosphate decarboxylase; cholestero 100.0
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 100.0
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 100.0
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 100.0
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 100.0
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 99.95
1h72_C296 HK, homoserine kinase; transferase, threonine bios 99.13
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 99.04
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 98.85
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 98.74
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 98.73
3hul_A298 HSK, HK, homoserine kinase; structural genomics, p 98.7
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 98.57
1pie_A419 Galactokinase; galactose, galactosemia, transferas 98.52
2v8p_A271 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 98.4
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 98.18
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 97.7
3k17_A365 LIN0012 protein; protein structure initiative II(P 97.41
4hac_A321 Mevalonate kinase; GHMP, ATP binding, phosphorylat 97.41
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 97.33
1uek_A275 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 97.29
2ww4_A283 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; 97.05
3pyf_A306 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 96.9
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 96.07
3gon_A335 Phosphomevalonate kinase; GHMP kinase superfamily, 95.48
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 92.33
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 83.4
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Back     alignment and structure
Probab=100.00  E-value=5.3e-65  Score=492.23  Aligned_cols=252  Identities=48%  Similarity=0.809  Sum_probs=226.8

Q ss_pred             hHHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhhhhhcCcc
Q 023760            7 QSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLL   86 (277)
Q Consensus         7 ~~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~tv~TSpl   86 (277)
                      ..+|++|||+||||+|||+|||||.|.+|...|+.||+|+++.++.|||+|+++++|+++.+|+++||+||++++.||++
T Consensus       159 ~~el~~lA~~~sGs~~~s~~GG~v~w~~~~~~d~~ds~a~~i~~~~~wp~L~ivvlv~~~~~K~vsST~~mr~~l~ts~~  238 (414)
T 3f0n_A          159 EGDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTL  238 (414)
T ss_dssp             CSCCHHHHHHHCGGGGGGGSSSEEEECCCSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCHHHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHhCCCcchHhhCCEEEEEeccCCCCCceEEEEcccccCCCCceEEEEEeCccccCCCchHHHHhhcccCcc
Confidence            47899999999999999999999999999888899999999988889999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHc-CCCeEEEE
Q 023760           87 LQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV-GSPQVAYT  165 (277)
Q Consensus        87 ~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~-g~~~v~yT  165 (277)
                      |++|+++++++++..|+.||+++||+.|++++|+|+++|||+|++++||++||++.|++||+.|+++|+.. |.. +|||
T Consensus       239 ~~~~v~~~~~~~~~~l~~AL~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~-~~~t  317 (414)
T 3f0n_A          239 LKFRAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTK-VAYT  317 (414)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCC-EEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCce-EEEE
Confidence            99999965699999999999999999999999999999999999999999999999999999999998765 666 9999


Q ss_pred             eccCCCeEEeeecccCHHHHHHHHHhcCCCCCCcCccccccCccchhhhccCCCcccccCCCCCcccc-ccccccCCCCc
Q 023760          166 FDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEIN-NISAQKYSGDV  244 (277)
Q Consensus       166 ~DAGPNv~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~g~~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~v  244 (277)
                      |||||||++||++ ++.++|++.|++.|++.++  +++|++|.+             ++...+++++. .+..++.+++|
T Consensus       318 sdAGPnv~vl~~~-~~~~~v~~~l~~~f~~~~~--~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~  381 (414)
T 3f0n_A          318 FDAGPNAVIFTLE-DTVAEFVAAVRHSFPPAAN--GDKFLKGLQ-------------VAPVLLSDELKAALVVEPSPGGV  381 (414)
T ss_dssp             CCSSSCEEEEEEH-HHHHHHHHHHHHHSCCSCC----CCEEESC-------------CCCCCCCHHHHHHSCSSCCTTSE
T ss_pred             ECCCCCEEEEEec-ccHHHHHHHHHHhcCCCCC--cccccccCc-------------cccccCChhhhhcccccccCCce
Confidence            9999999999995 7778999999999998766  457877743             33344455665 66666789999


Q ss_pred             ceEEEcCCCCCCeecCCCCccccCCCCCCCCC
Q 023760          245 NYFICTRPGGGPVLLSDDSKALLNPKSGLPKE  276 (277)
Q Consensus       245 ~~~i~T~vG~GP~~l~~~~~~Ll~~~~g~p~~  276 (277)
                      +|||||+||+||+++.++++|||++ +|+||.
T Consensus       382 ~~~i~t~~g~gp~~~~~~~~~l~~~-~g~~~~  412 (414)
T 3f0n_A          382 QYIIATQVGPGPQVLDDTHDHLLGQ-DGLPQR  412 (414)
T ss_dssp             EEEEEEEBCCCCEEECCGGGCSBCT-TSSBC-
T ss_pred             eEEEECCCCCCCEECCchhHhcCCC-CCCcCC
Confidence            9999999999999999889999998 999985
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Back     alignment and structure
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Back     alignment and structure
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei} Back     alignment and structure
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 Back     alignment and structure
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* Back     alignment and structure
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A* Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A Back     alignment and structure
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Back     alignment and structure
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 277
d1fi4a2203 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate dec 8e-67
d1fi4a1188 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarb 3e-19
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Mevalonate 5-diphosphate decarboxylase
domain: Mevalonate 5-diphosphate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  204 bits (521), Expect = 8e-67
 Identities = 80/217 (36%), Positives = 108/217 (49%), Gaps = 15/217 (6%)

Query: 57  LVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQ 116
           +   + VVS  +K+ SST GM+ +V TS L + R + VVPKR   M +AI   DF++FA+
Sbjct: 2   MKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEHVVPKRFEVMRKAIVEKDFATFAK 61

Query: 117 LTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIA 176
            T  DSN FHA CLD+ PPIFYMNDTS RIIS+    N+  G   VAYTFDAGPNAVL  
Sbjct: 62  ETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAGPNAVLYY 121

Query: 177 RNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNIS 236
              +  ++L   +   F      D        ++             E            
Sbjct: 122 L-AENESKLFAFIYKLFGSVPGWDKKFTTEQLEAFNHQFESSNFTARELDLELQ------ 174

Query: 237 AQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGL 273
                 DV   I T+ G GP   ++   +L++ K+GL
Sbjct: 175 -----KDVARVILTQVGSGPQETNE---SLIDAKTGL 203
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query277
d1fi4a2203 Mevalonate 5-diphosphate decarboxylase {Baker's ye 100.0
d1h72c2133 Homoserine kinase {Archaeon Methanococcus jannasch 91.55
d1wuua2176 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 86.27
d1k47a2135 Phosphomevalonate kinase (PMK) {Streptococcus pneu 86.26
d1piea2183 Galactokinase {Lactococcus lactis [TaxId: 1358]} 84.93
d1s4ea2171 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 84.21
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Mevalonate 5-diphosphate decarboxylase
domain: Mevalonate 5-diphosphate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.5e-66  Score=455.90  Aligned_cols=202  Identities=40%  Similarity=0.578  Sum_probs=170.3

Q ss_pred             cceEEEEEEcCCCCCCCchHHHhhhhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCC
Q 023760           56 DLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPP  135 (277)
Q Consensus        56 ~l~~ii~vvs~~~K~vsSt~GM~~tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Pp  135 (277)
                      +||++|||||+++|+||||+|||+||+|||||++|+++++|+|+++|++||++|||++||+|+|+|||+|||+||+|+||
T Consensus         1 elr~~IlVvs~~~K~vsSt~GM~~tv~TSpl~~~r~~~~~p~r~~~m~~AI~~rDF~~f~eite~ds~~mHA~~l~s~Pp   80 (203)
T d1fi4a2           1 QMKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEHVVPKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPP   80 (203)
T ss_dssp             TEEEEEEEECCCSCCCCHHHHHHHHHHHCSHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred             CceEEEEEecCCCCCCCcHHHHHHHHHhChhHHHHHHHHhHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHHHhcCCCC
Confidence            58999999999999999999999999999999999998889999999999999999999999999999999999999999


Q ss_pred             eEeeehhHHHHHHHHHHHHHHcCCCeEEEEeccCCCeEEeeecccCHHHHHHHHHhcCCCCCCcCccccccCccchhhhc
Q 023760          136 IFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDA  215 (277)
Q Consensus       136 i~Y~n~~S~~ii~~V~~~nr~~g~~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~g~~~~l~~~  215 (277)
                      |+||||+|++||++||+||+..|..+|||||||||||||||++ ++.++|++.|++.||+..+|+  .++.+..  +...
T Consensus        81 i~Ylnd~S~~ii~~V~~~r~~~g~~~v~yT~DAGPNv~ll~~~-~~~~~v~~~l~~~f~~~~~~~--~~~~~~~--~~~~  155 (203)
T d1fi4a2          81 IFYMNDTSKRIISWCHTINQFYGETIVAYTFDAGPNAVLYYLA-ENESKLFAFIYKLFGSVPGWD--KKFTTEQ--LEAF  155 (203)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSSSCEEEEEEG-GGHHHHHHHHHHHHTTSTTST--TTCCHHH--HHHH
T ss_pred             eEEECchHHHHHHHHHHHHHhcCCccEEEEECCCCCEEEEEcc-ccHHHHHHHHHHHCCCCCCcc--ccccccc--cccc
Confidence            9999999999999999999876655699999999999999995 778899999999999988764  3333321  1110


Q ss_pred             cCCCcccccCCCCCcccccccc-ccCCCCcceEEEcCCCCCCeecCCCCccccCCCCCC
Q 023760          216 GIDGMKDIEALPLPPEINNISA-QKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGL  273 (277)
Q Consensus       216 g~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~i~T~vG~GP~~l~~~~~~Ll~~~~g~  273 (277)
                      ...    .+    +..+..... ...+++|+|||||+||+||+.+   ++||||++|||
T Consensus       156 ~~~----~~----~~~~~~~~~~~~~~~~v~~iI~T~vG~GP~~~---~~~L~~~~tgl  203 (203)
T d1fi4a2         156 NHQ----FE----SSNFTARELDLELQKDVARVILTQVGSGPQET---NESLIDAKTGL  203 (203)
T ss_dssp             HHH----HH----TSCCCSSCCCSSGGGGEEEEEEEEBCCCCEEC---SCCSSCSSSCC
T ss_pred             ccc----cc----ccccccccccccccCCccEEEEcCCCCCcccc---chhccCCCCCC
Confidence            000    00    001111111 2368999999999999999976   47999999997
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure